Query 005254
Match_columns 706
No_of_seqs 893 out of 3308
Neff 12.4
Searched_HMMs 46136
Date Thu Mar 28 20:33:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0319 WD40-repeat-containing 100.0 1.2E-92 2.6E-97 651.1 57.1 667 1-706 1-675 (775)
2 KOG0291 WD40-repeat-containing 100.0 5.4E-62 1.2E-66 449.8 63.4 581 6-656 1-618 (893)
3 KOG0306 WD40-repeat-containing 100.0 2.3E-63 5E-68 458.6 53.4 602 30-653 33-667 (888)
4 KOG0318 WD40 repeat stress pro 100.0 2.3E-60 4.9E-65 420.6 62.7 588 1-650 1-602 (603)
5 KOG0319 WD40-repeat-containing 100.0 3.5E-61 7.5E-66 443.8 44.5 528 24-609 67-620 (775)
6 KOG0291 WD40-repeat-containing 100.0 4.6E-56 1E-60 410.6 62.5 594 6-704 42-760 (893)
7 KOG0271 Notchless-like WD40 re 100.0 1.6E-58 3.6E-63 392.1 29.8 336 93-648 106-479 (480)
8 KOG0271 Notchless-like WD40 re 100.0 6.6E-58 1.4E-62 388.4 29.3 368 53-606 108-479 (480)
9 KOG0318 WD40 repeat stress pro 100.0 1.1E-51 2.4E-56 365.6 59.8 529 17-608 52-602 (603)
10 KOG0306 WD40-repeat-containing 100.0 1.9E-52 4E-57 386.6 50.3 557 22-610 68-666 (888)
11 KOG1408 WD40 repeat protein [F 100.0 2.1E-52 4.7E-57 383.9 44.0 603 21-670 39-733 (1080)
12 KOG1408 WD40 repeat protein [F 100.0 8E-47 1.7E-51 347.4 38.3 537 24-609 83-714 (1080)
13 KOG0272 U4/U6 small nuclear ri 100.0 8.9E-48 1.9E-52 331.5 23.7 284 351-648 173-458 (459)
14 KOG1539 WD repeat protein [Gen 100.0 6.9E-43 1.5E-47 327.6 55.4 585 15-651 29-649 (910)
15 KOG2106 Uncharacterized conser 100.0 6.6E-43 1.4E-47 308.4 46.3 492 9-649 89-625 (626)
16 KOG0272 U4/U6 small nuclear ri 100.0 3.4E-46 7.4E-51 321.8 24.4 285 100-564 173-458 (459)
17 KOG1539 WD repeat protein [Gen 100.0 2.9E-42 6.2E-47 323.4 51.6 535 25-608 80-648 (910)
18 KOG0286 G-protein beta subunit 100.0 4.2E-43 9.2E-48 287.7 34.6 287 53-522 48-343 (343)
19 KOG1063 RNA polymerase II elon 100.0 1.1E-41 2.4E-46 312.7 44.8 577 25-652 20-701 (764)
20 KOG0286 G-protein beta subunit 100.0 1.4E-41 2.9E-46 278.9 35.3 292 341-648 43-343 (343)
21 KOG0276 Vesicle coat complex C 100.0 3.2E-40 7E-45 299.3 45.8 469 23-655 17-495 (794)
22 KOG0279 G protein beta subunit 100.0 2E-41 4.2E-46 276.2 33.5 291 343-650 5-313 (315)
23 KOG0296 Angio-associated migra 100.0 2.4E-41 5.3E-46 286.3 34.4 332 52-566 56-398 (399)
24 KOG0315 G-protein beta subunit 100.0 4.2E-41 9.2E-46 269.3 32.2 293 157-628 9-308 (311)
25 KOG0279 G protein beta subunit 100.0 1.5E-40 3.3E-45 271.0 33.3 286 24-334 20-313 (315)
26 KOG0315 G-protein beta subunit 100.0 2.4E-40 5.2E-45 265.0 32.1 295 115-587 11-309 (311)
27 KOG0273 Beta-transducin family 100.0 9.9E-41 2.1E-45 292.3 32.3 326 141-650 175-523 (524)
28 KOG0296 Angio-associated migra 100.0 3.5E-40 7.6E-45 279.4 32.7 340 93-608 55-398 (399)
29 KOG0273 Beta-transducin family 100.0 6.3E-40 1.4E-44 287.3 32.6 324 100-608 176-523 (524)
30 KOG2106 Uncharacterized conser 100.0 1.1E-36 2.5E-41 269.2 48.3 491 15-657 55-588 (626)
31 KOG0295 WD40 repeat-containing 100.0 1.3E-39 2.9E-44 275.6 23.7 289 345-648 100-404 (406)
32 KOG0276 Vesicle coat complex C 100.0 3.8E-37 8.2E-42 279.5 38.8 412 96-657 7-459 (794)
33 KOG0295 WD40 repeat-containing 100.0 6.1E-39 1.3E-43 271.7 25.2 305 51-471 99-405 (406)
34 KOG0263 Transcription initiati 100.0 1.2E-38 2.6E-43 298.6 28.3 246 378-637 433-702 (707)
35 KOG1063 RNA polymerase II elon 100.0 3.8E-36 8.3E-41 276.5 43.0 539 24-650 59-763 (764)
36 KOG0293 WD40 repeat-containing 100.0 9.2E-39 2E-43 275.0 23.8 293 53-473 217-514 (519)
37 KOG0263 Transcription initiati 100.0 5.2E-39 1.1E-43 301.0 23.8 277 353-655 378-654 (707)
38 KOG2048 WD40 repeat protein [G 100.0 3E-34 6.5E-39 263.7 54.3 551 55-658 20-609 (691)
39 KOG0292 Vesicle coat complex C 100.0 4.4E-36 9.6E-41 283.7 42.7 360 56-474 5-399 (1202)
40 KOG0284 Polyadenylation factor 100.0 1.1E-39 2.4E-44 280.3 16.7 286 352-652 95-382 (464)
41 KOG0285 Pleiotropic regulator 100.0 6.3E-38 1.4E-42 264.8 27.0 292 52-475 143-442 (460)
42 KOG0292 Vesicle coat complex C 100.0 2.1E-34 4.5E-39 272.5 52.4 543 24-656 14-600 (1202)
43 KOG0265 U5 snRNP-specific prot 100.0 8.6E-37 1.9E-41 251.9 29.3 289 345-648 39-336 (338)
44 KOG0645 WD40 repeat protein [G 100.0 5.2E-36 1.1E-40 243.5 33.3 295 52-524 6-311 (312)
45 KOG0281 Beta-TrCP (transducin 100.0 2.6E-39 5.7E-44 272.1 12.9 277 353-655 197-482 (499)
46 KOG0284 Polyadenylation factor 100.0 1.8E-38 3.9E-43 272.9 16.6 284 60-524 96-380 (464)
47 KOG0285 Pleiotropic regulator 100.0 1.7E-36 3.6E-41 256.2 26.1 293 343-652 141-441 (460)
48 KOG0265 U5 snRNP-specific prot 100.0 8.1E-36 1.8E-40 246.2 29.0 292 94-564 39-336 (338)
49 KOG0282 mRNA splicing factor [ 100.0 6.5E-38 1.4E-42 275.9 17.5 294 51-470 205-503 (503)
50 KOG0645 WD40 repeat protein [G 100.0 5.5E-35 1.2E-39 237.6 31.7 279 24-384 19-311 (312)
51 KOG0316 Conserved WD40 repeat- 100.0 1.6E-35 3.5E-40 235.3 26.4 286 52-470 9-297 (307)
52 KOG2048 WD40 repeat protein [G 100.0 3.8E-31 8.1E-36 243.5 55.1 531 24-607 30-600 (691)
53 KOG0266 WD40 repeat-containing 100.0 9E-35 1.9E-39 283.2 33.2 293 54-472 152-454 (456)
54 KOG0275 Conserved WD40 repeat- 100.0 2E-36 4.3E-41 252.5 16.6 287 59-470 212-507 (508)
55 cd00200 WD40 WD40 domain, foun 100.0 8.5E-34 1.9E-38 268.6 36.8 286 348-648 4-289 (289)
56 cd00200 WD40 WD40 domain, foun 100.0 1.2E-33 2.6E-38 267.5 37.0 287 54-522 3-289 (289)
57 KOG0316 Conserved WD40 repeat- 100.0 2.6E-34 5.6E-39 228.5 25.8 284 347-648 11-297 (307)
58 KOG0266 WD40 repeat-containing 100.0 3.4E-34 7.4E-39 279.2 32.5 283 353-650 159-454 (456)
59 PLN00181 protein SPA1-RELATED; 100.0 2.9E-33 6.4E-38 295.3 41.1 237 399-649 535-792 (793)
60 KOG0293 WD40 repeat-containing 100.0 1.2E-34 2.7E-39 249.7 23.7 280 24-430 229-514 (519)
61 KOG0278 Serine/threonine kinas 100.0 3.2E-35 7E-40 235.8 17.9 293 347-656 8-303 (334)
62 KOG0281 Beta-TrCP (transducin 100.0 1.5E-35 3.3E-40 249.5 14.9 287 101-529 196-482 (499)
63 PLN00181 protein SPA1-RELATED; 100.0 3.6E-32 7.8E-37 287.1 41.4 308 81-565 457-792 (793)
64 KOG0278 Serine/threonine kinas 100.0 3E-34 6.6E-39 230.2 19.4 290 96-570 8-301 (334)
65 KOG0282 mRNA splicing factor [ 100.0 1.1E-34 2.4E-39 255.6 17.8 290 345-648 206-503 (503)
66 KOG1407 WD40 repeat protein [F 100.0 5.3E-32 1.1E-36 219.0 26.8 241 394-650 62-311 (313)
67 KOG0643 Translation initiation 100.0 2.9E-32 6.2E-37 221.3 24.0 296 348-652 5-319 (327)
68 KOG0310 Conserved WD40 repeat- 100.0 2E-32 4.2E-37 242.0 24.9 284 351-651 24-310 (487)
69 KOG0277 Peroxisomal targeting 100.0 2.4E-32 5.1E-37 220.1 20.7 281 357-649 12-308 (311)
70 KOG0313 Microtubule binding pr 100.0 1.6E-31 3.5E-36 228.2 27.0 291 352-650 104-418 (423)
71 KOG0275 Conserved WD40 repeat- 100.0 3.9E-33 8.5E-38 232.9 16.0 282 101-564 212-507 (508)
72 KOG1446 Histone H3 (Lys4) meth 100.0 2.8E-30 6E-35 216.1 32.5 287 347-652 8-305 (311)
73 KOG0643 Translation initiation 100.0 1.9E-31 4.1E-36 216.6 24.6 214 25-241 16-243 (327)
74 KOG0313 Microtubule binding pr 100.0 6.7E-31 1.5E-35 224.4 27.9 312 25-472 57-418 (423)
75 KOG0305 Anaphase promoting com 100.0 8.8E-31 1.9E-35 241.8 28.6 270 366-652 188-463 (484)
76 KOG0274 Cdc4 and related F-box 100.0 7.8E-31 1.7E-35 253.1 29.6 280 353-658 208-490 (537)
77 KOG1407 WD40 repeat protein [F 100.0 2.3E-30 4.9E-35 209.6 27.0 278 96-557 14-293 (313)
78 KOG0305 Anaphase promoting com 100.0 1.1E-30 2.3E-35 241.2 27.7 276 24-431 182-463 (484)
79 KOG0283 WD40 repeat-containing 100.0 4.3E-31 9.3E-36 250.5 25.1 260 52-431 258-578 (712)
80 KOG0299 U3 snoRNP-associated p 100.0 2.6E-30 5.6E-35 226.8 26.2 300 53-472 135-456 (479)
81 KOG0274 Cdc4 and related F-box 100.0 7.1E-30 1.5E-34 246.5 31.9 284 59-535 207-493 (537)
82 KOG1446 Histone H3 (Lys4) meth 100.0 7.6E-29 1.7E-33 207.5 33.3 292 52-472 6-303 (311)
83 KOG0310 Conserved WD40 repeat- 100.0 3.9E-30 8.5E-35 227.5 26.7 286 301-608 23-309 (487)
84 KOG0277 Peroxisomal targeting 100.0 1.3E-30 2.7E-35 210.2 20.9 268 323-607 35-308 (311)
85 KOG0640 mRNA cleavage stimulat 100.0 1E-30 2.2E-35 217.0 20.8 201 24-226 117-343 (430)
86 PTZ00421 coronin; Provisional 100.0 1.1E-28 2.3E-33 238.6 38.2 218 1-220 1-247 (493)
87 KOG0289 mRNA splicing factor [ 100.0 8.4E-30 1.8E-34 221.6 26.4 280 355-649 221-505 (506)
88 KOG0288 WD40 repeat protein Ti 100.0 3.7E-31 7.9E-36 228.6 17.3 285 93-563 166-458 (459)
89 KOG0288 WD40 repeat protein Ti 100.0 4.6E-31 9.9E-36 228.0 17.5 282 348-648 170-459 (459)
90 KOG0973 Histone transcription 100.0 2.5E-29 5.5E-34 245.2 29.6 218 429-657 117-362 (942)
91 KOG0973 Histone transcription 100.0 2.6E-29 5.7E-34 245.1 28.9 293 59-525 12-356 (942)
92 KOG0283 WD40 repeat-containing 100.0 1.5E-29 3.3E-34 240.0 25.7 207 387-609 360-577 (712)
93 KOG1445 Tumor-specific antigen 100.0 7.7E-28 1.7E-32 219.9 35.0 233 417-653 599-847 (1012)
94 KOG0300 WD40 repeat-containing 100.0 2.1E-29 4.5E-34 210.1 22.6 296 52-526 140-478 (481)
95 KOG0294 WD40 repeat-containing 100.0 1E-28 2.2E-33 205.9 26.5 246 53-431 36-283 (362)
96 KOG0640 mRNA cleavage stimulat 100.0 4.5E-30 9.8E-35 213.2 18.4 251 389-650 165-426 (430)
97 KOG0772 Uncharacterized conser 100.0 2.4E-29 5.1E-34 223.8 24.1 209 438-650 265-487 (641)
98 KOG0268 Sof1-like rRNA process 100.0 1.2E-30 2.6E-35 221.4 15.3 293 137-616 59-353 (433)
99 KOG0772 Uncharacterized conser 100.0 2.5E-29 5.4E-34 223.7 23.8 303 138-606 161-485 (641)
100 KOG0289 mRNA splicing factor [ 100.0 1E-28 2.2E-33 215.0 26.4 205 24-230 224-431 (506)
101 KOG0301 Phospholipase A2-activ 100.0 9.4E-29 2E-33 228.3 27.6 286 344-654 5-292 (745)
102 KOG1445 Tumor-specific antigen 100.0 5E-28 1.1E-32 221.1 31.3 176 461-642 600-786 (1012)
103 KOG0294 WD40 repeat-containing 100.0 5.2E-28 1.1E-32 201.7 28.6 289 318-628 3-305 (362)
104 KOG0308 Conserved WD40 repeat- 100.0 9.4E-30 2E-34 233.0 19.6 362 107-659 29-402 (735)
105 KOG0647 mRNA export protein (c 100.0 3.1E-28 6.7E-33 201.8 26.0 277 58-463 25-315 (347)
106 KOG1963 WD40 repeat protein [G 100.0 1.5E-26 3.3E-31 220.7 40.9 479 24-572 21-589 (792)
107 KOG0641 WD40 repeat protein [G 100.0 2E-26 4.4E-31 182.6 34.3 300 54-524 27-349 (350)
108 PTZ00421 coronin; Provisional 100.0 2.6E-27 5.7E-32 229.0 35.9 165 60-225 20-205 (493)
109 KOG0646 WD40 repeat protein [G 100.0 2E-28 4.4E-33 215.4 25.3 293 81-589 17-330 (476)
110 KOG0268 Sof1-like rRNA process 100.0 1.1E-29 2.3E-34 215.8 16.7 302 344-666 57-361 (433)
111 PTZ00420 coronin; Provisional 100.0 1.4E-27 3E-32 231.4 32.8 235 416-653 49-296 (568)
112 KOG2096 WD40 repeat protein [G 100.0 7.6E-28 1.7E-32 200.9 26.0 201 440-654 186-406 (420)
113 KOG0647 mRNA export protein (c 100.0 5E-28 1.1E-32 200.6 24.3 275 142-597 25-312 (347)
114 KOG0300 WD40 repeat-containing 100.0 2.1E-28 4.6E-33 204.1 22.2 332 135-610 139-478 (481)
115 KOG0299 U3 snoRNP-associated p 100.0 5.5E-28 1.2E-32 212.3 25.8 294 95-563 135-453 (479)
116 KOG0264 Nucleosome remodeling 100.0 2.3E-28 5E-33 214.7 23.2 256 392-652 120-406 (422)
117 KOG2096 WD40 repeat protein [G 100.0 1.1E-27 2.3E-32 200.1 25.4 315 41-564 62-400 (420)
118 KOG0308 Conserved WD40 repeat- 100.0 6.2E-29 1.3E-33 227.7 19.1 291 359-652 30-329 (735)
119 KOG0641 WD40 repeat protein [G 100.0 8.7E-26 1.9E-30 179.1 33.6 289 95-566 26-349 (350)
120 PTZ00420 coronin; Provisional 100.0 6.6E-27 1.4E-31 226.7 33.1 248 372-633 50-319 (568)
121 KOG0301 Phospholipase A2-activ 100.0 3.8E-27 8.2E-32 217.8 28.0 283 50-474 4-290 (745)
122 KOG1036 Mitotic spindle checkp 100.0 3.9E-26 8.5E-31 190.3 27.4 270 59-462 12-294 (323)
123 KOG0646 WD40 repeat protein [G 100.0 1.1E-26 2.5E-31 204.5 25.4 269 376-659 18-316 (476)
124 KOG1036 Mitotic spindle checkp 100.0 4.7E-26 1E-30 189.8 26.8 229 352-598 53-294 (323)
125 KOG1332 Vesicle coat complex C 100.0 3.6E-27 7.8E-32 189.2 17.4 249 393-652 8-288 (299)
126 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2E-24 4.3E-29 204.9 39.5 290 72-546 1-300 (300)
127 KOG0264 Nucleosome remodeling 100.0 1.9E-26 4.1E-31 202.8 22.9 252 347-608 118-404 (422)
128 KOG1538 Uncharacterized conser 100.0 3.3E-25 7.2E-30 204.1 31.3 475 24-563 17-521 (1081)
129 KOG1332 Vesicle coat complex C 99.9 3.2E-26 6.9E-31 183.9 18.7 145 55-199 6-160 (299)
130 KOG4283 Transcription-coupled 99.9 3.1E-25 6.8E-30 183.3 24.8 298 55-523 38-364 (397)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.4E-24 7.4E-29 203.3 36.0 272 367-655 2-284 (300)
132 KOG0639 Transducin-like enhanc 99.9 3E-26 6.5E-31 203.5 20.0 279 352-649 418-703 (705)
133 KOG1274 WD40 repeat protein [G 99.9 2.5E-22 5.5E-27 192.6 47.4 250 1-283 1-263 (933)
134 KOG1538 Uncharacterized conser 99.9 3.4E-24 7.5E-29 197.5 32.7 279 62-523 14-292 (1081)
135 KOG4283 Transcription-coupled 99.9 1.7E-24 3.6E-29 179.1 25.3 254 351-607 99-364 (397)
136 KOG0269 WD40 repeat-containing 99.9 7.1E-26 1.5E-30 212.2 19.2 235 406-651 95-341 (839)
137 KOG0650 WD40 repeat nucleolar 99.9 6.3E-25 1.4E-29 199.6 24.0 313 54-563 394-732 (733)
138 KOG0639 Transducin-like enhanc 99.9 2.8E-25 6.1E-30 197.4 20.8 228 365-607 476-703 (705)
139 KOG2055 WD40 repeat protein [G 99.9 9.5E-25 2.1E-29 192.1 23.8 286 60-524 213-512 (514)
140 KOG1963 WD40 repeat protein [G 99.9 1.4E-22 3.1E-27 193.8 40.5 520 106-656 20-589 (792)
141 KOG1274 WD40 repeat protein [G 99.9 1E-24 2.2E-29 208.8 26.0 243 393-651 10-263 (933)
142 KOG0267 Microtubule severing p 99.9 5.5E-27 1.2E-31 217.8 10.3 251 372-642 10-260 (825)
143 KOG0321 WD40 repeat-containing 99.9 7.3E-25 1.6E-29 200.8 22.9 291 363-656 61-397 (720)
144 KOG2055 WD40 repeat protein [G 99.9 2.6E-24 5.7E-29 189.3 25.0 285 351-650 211-512 (514)
145 KOG0650 WD40 repeat nucleolar 99.9 1.6E-24 3.4E-29 197.0 23.4 216 420-647 496-732 (733)
146 KOG1273 WD40 repeat protein [G 99.9 3.8E-24 8.2E-29 178.8 23.7 289 147-566 26-322 (405)
147 KOG2445 Nuclear pore complex c 99.9 2.9E-23 6.4E-28 173.0 26.5 256 393-653 10-321 (361)
148 COG2319 FOG: WD40 repeat [Gene 99.9 2.4E-20 5.2E-25 189.5 51.7 373 97-651 60-443 (466)
149 KOG0269 WD40 repeat-containing 99.9 1.2E-24 2.6E-29 204.0 17.8 286 310-608 45-340 (839)
150 KOG4328 WD40 protein [Function 99.9 2.6E-23 5.5E-28 183.0 24.7 306 129-608 171-495 (498)
151 KOG0321 WD40 repeat-containing 99.9 8.9E-24 1.9E-28 193.8 22.2 296 66-474 55-393 (720)
152 COG2319 FOG: WD40 repeat [Gene 99.9 4.6E-20 9.9E-25 187.4 52.3 371 55-609 60-443 (466)
153 KOG1912 WD40 repeat protein [G 99.9 4.2E-22 9E-27 187.2 33.5 541 22-648 18-739 (1062)
154 KOG2445 Nuclear pore complex c 99.9 2.3E-22 4.9E-27 167.7 27.2 272 99-524 10-318 (361)
155 KOG0267 Microtubule severing p 99.9 1.2E-25 2.5E-30 209.1 8.5 221 414-651 7-227 (825)
156 KOG1273 WD40 repeat protein [G 99.9 4.8E-23 1E-27 172.2 23.0 285 356-652 26-324 (405)
157 KOG1034 Transcriptional repres 99.9 7.8E-23 1.7E-27 172.1 23.5 316 55-472 33-383 (385)
158 KOG4328 WD40 protein [Function 99.9 8.9E-23 1.9E-27 179.6 23.2 291 347-650 180-495 (498)
159 KOG1034 Transcriptional repres 99.9 1.7E-22 3.7E-27 170.0 22.9 291 347-650 32-383 (385)
160 KOG4378 Nuclear protein COP1 [ 99.9 1.2E-22 2.6E-27 180.6 22.5 285 82-548 12-305 (673)
161 KOG1009 Chromatin assembly com 99.9 1.3E-21 2.9E-26 169.7 27.6 164 60-225 13-202 (434)
162 KOG0302 Ribosome Assembly prot 99.9 1.6E-22 3.5E-27 173.4 21.5 248 392-648 147-436 (440)
163 KOG2919 Guanine nucleotide-bin 99.9 3.8E-22 8.2E-27 167.6 22.7 235 411-652 123-369 (406)
164 KOG4378 Nuclear protein COP1 [ 99.9 2.5E-22 5.5E-27 178.6 22.3 295 32-506 4-305 (673)
165 KOG0302 Ribosome Assembly prot 99.9 5.7E-23 1.2E-27 176.1 16.9 221 438-659 148-387 (440)
166 KOG0322 G-protein beta subunit 99.9 1.4E-22 3E-27 165.1 17.8 306 93-565 5-322 (323)
167 KOG0270 WD40 repeat-containing 99.9 1.3E-21 2.9E-26 171.7 23.6 239 364-614 190-455 (463)
168 KOG0270 WD40 repeat-containing 99.9 6.3E-22 1.4E-26 173.7 21.0 235 30-284 191-451 (463)
169 KOG4497 Uncharacterized conser 99.9 2.2E-21 4.7E-26 163.5 18.3 177 25-205 14-195 (447)
170 KOG2919 Guanine nucleotide-bin 99.9 6E-20 1.3E-24 154.5 26.0 282 105-558 52-362 (406)
171 KOG0307 Vesicle coat complex C 99.9 3.2E-22 6.9E-27 197.1 14.2 246 398-653 66-330 (1049)
172 KOG0307 Vesicle coat complex C 99.9 4.6E-22 1E-26 196.0 15.2 283 24-475 11-330 (1049)
173 KOG0322 G-protein beta subunit 99.9 4.7E-21 1E-25 156.3 16.4 289 349-649 10-322 (323)
174 KOG1524 WD40 repeat-containing 99.9 1.2E-19 2.5E-24 163.5 26.0 440 31-609 76-524 (737)
175 KOG0644 Uncharacterized conser 99.9 4.9E-22 1.1E-26 188.2 11.3 283 53-474 183-470 (1113)
176 KOG1188 WD40 repeat protein [G 99.9 4.7E-20 1E-24 156.5 17.6 275 366-652 40-348 (376)
177 KOG1310 WD40 repeat protein [G 99.9 1.2E-19 2.6E-24 163.9 21.1 127 93-219 41-179 (758)
178 KOG4227 WD40 repeat protein [G 99.9 2.7E-19 5.9E-24 154.6 22.1 302 97-523 51-386 (609)
179 KOG0649 WD40 repeat protein [G 99.9 3.3E-18 7.1E-23 138.1 26.7 163 61-228 11-196 (325)
180 KOG1009 Chromatin assembly com 99.8 3.7E-19 8.1E-24 154.7 22.4 257 396-655 13-377 (434)
181 KOG0649 WD40 repeat protein [G 99.8 9.4E-19 2E-23 141.2 23.1 237 406-653 18-277 (325)
182 KOG0642 Cell-cycle nuclear pro 99.8 2.2E-20 4.8E-25 169.4 15.2 261 391-656 289-567 (577)
183 KOG1007 WD repeat protein TSSC 99.8 2.7E-19 5.8E-24 148.1 20.1 268 376-652 40-363 (370)
184 KOG0644 Uncharacterized conser 99.8 5E-21 1.1E-25 181.5 10.2 292 93-528 181-472 (1113)
185 KOG1587 Cytoplasmic dynein int 99.8 1.1E-18 2.4E-23 167.6 25.3 278 376-655 222-521 (555)
186 KOG1912 WD40 repeat protein [G 99.8 2.6E-18 5.7E-23 162.0 27.0 455 60-609 15-552 (1062)
187 KOG1188 WD40 repeat protein [G 99.8 2.3E-19 5E-24 152.4 18.0 195 32-227 41-251 (376)
188 KOG0303 Actin-binding protein 99.8 2.8E-19 6.1E-24 154.7 17.8 209 54-284 75-296 (472)
189 KOG1587 Cytoplasmic dynein int 99.8 1.6E-18 3.5E-23 166.4 25.0 279 124-525 222-517 (555)
190 KOG0974 WD-repeat protein WDR6 99.8 2.1E-16 4.6E-21 154.9 39.0 187 29-220 97-290 (967)
191 PRK11028 6-phosphogluconolacto 99.8 2.2E-17 4.7E-22 157.0 31.2 270 369-651 5-305 (330)
192 KOG4227 WD40 repeat protein [G 99.8 3E-18 6.5E-23 148.2 22.6 165 54-220 50-227 (609)
193 PF02239 Cytochrom_D1: Cytochr 99.8 1.2E-15 2.6E-20 143.4 42.0 330 73-575 6-356 (369)
194 KOG0303 Actin-binding protein 99.8 1.1E-18 2.4E-23 151.0 19.3 213 436-653 76-297 (472)
195 KOG1517 Guanine nucleotide bin 99.8 4.3E-18 9.4E-23 166.3 25.3 189 414-611 1180-1384(1387)
196 KOG0642 Cell-cycle nuclear pro 99.8 2.2E-19 4.7E-24 163.1 15.3 267 53-441 287-573 (577)
197 KOG1524 WD40 repeat-containing 99.8 2.2E-17 4.8E-22 149.0 27.7 486 24-653 19-526 (737)
198 KOG1310 WD40 repeat protein [G 99.8 1.5E-18 3.3E-23 156.9 18.6 166 52-218 42-231 (758)
199 KOG1007 WD repeat protein TSSC 99.8 2.2E-17 4.7E-22 137.0 23.5 282 122-525 38-362 (370)
200 KOG2315 Predicted translation 99.8 3.7E-16 8.1E-21 142.5 32.9 378 33-589 4-411 (566)
201 PF02239 Cytochrom_D1: Cytochr 99.8 1.5E-15 3.2E-20 142.7 38.3 320 160-617 8-356 (369)
202 KOG1240 Protein kinase contain 99.8 1.4E-17 3.1E-22 165.4 25.6 181 45-226 1034-1233(1431)
203 KOG2110 Uncharacterized conser 99.8 9.1E-17 2E-21 138.4 26.5 225 411-653 17-251 (391)
204 KOG2110 Uncharacterized conser 99.8 5.5E-16 1.2E-20 133.7 29.8 233 25-337 11-251 (391)
205 KOG2041 WD40 repeat protein [G 99.8 1.5E-16 3.1E-21 149.1 27.9 517 102-704 14-677 (1189)
206 KOG4497 Uncharacterized conser 99.8 1.4E-17 3E-22 140.8 19.1 267 365-653 60-394 (447)
207 KOG1334 WD40 repeat protein [G 99.8 1.9E-18 4.2E-23 154.0 13.8 315 52-432 134-469 (559)
208 KOG0290 Conserved WD40 repeat- 99.8 3.9E-17 8.4E-22 135.7 20.0 254 398-654 46-322 (364)
209 KOG1517 Guanine nucleotide bin 99.8 3.8E-17 8.2E-22 159.8 23.1 283 357-653 1068-1384(1387)
210 KOG0771 Prolactin regulatory e 99.8 5.5E-18 1.2E-22 148.7 15.2 196 445-652 148-356 (398)
211 KOG2394 WD40 protein DMR-N9 [G 99.8 2E-17 4.4E-22 149.4 19.1 224 408-656 183-458 (636)
212 PRK11028 6-phosphogluconolacto 99.8 1.8E-15 4E-20 143.8 34.0 244 356-608 37-304 (330)
213 KOG2111 Uncharacterized conser 99.8 3E-15 6.4E-20 126.6 30.3 277 358-652 10-324 (346)
214 KOG1334 WD40 repeat protein [G 99.8 5.2E-18 1.1E-22 151.3 13.9 300 344-652 133-468 (559)
215 COG5354 Uncharacterized protei 99.8 2.5E-15 5.3E-20 135.4 30.1 352 22-600 35-421 (561)
216 KOG0771 Prolactin regulatory e 99.8 2E-17 4.3E-22 145.3 14.9 194 23-219 148-355 (398)
217 KOG1272 WD40-repeat-containing 99.7 6.4E-18 1.4E-22 149.7 10.6 198 25-228 135-333 (545)
218 PRK01742 tolB translocation pr 99.7 4.6E-16 1E-20 152.2 24.6 238 375-631 183-426 (429)
219 KOG2139 WD40 repeat protein [G 99.7 2.7E-15 5.9E-20 128.9 25.8 302 24-383 103-430 (445)
220 KOG1523 Actin-related protein 99.7 7.8E-16 1.7E-20 130.0 21.0 196 24-221 15-239 (361)
221 COG5354 Uncharacterized protei 99.7 2.5E-14 5.5E-19 129.0 31.7 153 39-200 10-185 (561)
222 KOG0290 Conserved WD40 repeat- 99.7 4.5E-15 9.9E-20 123.6 24.8 240 394-646 94-361 (364)
223 PRK01742 tolB translocation pr 99.7 4.6E-16 1E-20 152.2 21.4 211 420-650 183-401 (429)
224 KOG0974 WD-repeat protein WDR6 99.7 4.7E-13 1E-17 132.0 41.2 154 19-177 133-289 (967)
225 COG4946 Uncharacterized protei 99.7 1.1E-11 2.4E-16 111.3 45.4 556 26-653 43-657 (668)
226 KOG1240 Protein kinase contain 99.7 4.2E-15 9E-20 148.3 25.9 294 344-648 1039-1431(1431)
227 KOG1272 WD40-repeat-containing 99.7 1.9E-17 4.1E-22 146.8 8.4 229 399-648 132-360 (545)
228 KOG2394 WD40 protein DMR-N9 [G 99.7 5.3E-16 1.1E-20 140.4 17.6 195 364-587 183-383 (636)
229 KOG1523 Actin-related protein 99.7 4.8E-15 1E-19 125.3 21.1 236 394-641 8-269 (361)
230 KOG3881 Uncharacterized conser 99.7 3.7E-15 8E-20 129.6 20.0 270 354-631 56-342 (412)
231 KOG2139 WD40 repeat protein [G 99.7 9.6E-14 2.1E-18 119.6 28.1 291 102-565 98-430 (445)
232 KOG3881 Uncharacterized conser 99.7 6.4E-15 1.4E-19 128.2 20.7 211 439-659 103-329 (412)
233 PRK03629 tolB translocation pr 99.7 4.8E-14 1E-18 137.5 28.5 236 376-630 179-427 (429)
234 PF08662 eIF2A: Eukaryotic tra 99.7 1.4E-14 3.1E-19 123.0 20.0 150 498-652 9-181 (194)
235 KOG2321 WD40 repeat protein [G 99.7 5.9E-14 1.3E-18 128.5 23.6 281 351-651 49-344 (703)
236 PF04762 IKI3: IKI3 family; I 99.7 1.4E-09 3E-14 114.6 59.3 518 23-650 25-639 (928)
237 KOG2111 Uncharacterized conser 99.7 1E-12 2.3E-17 111.4 29.2 234 25-285 11-259 (346)
238 KOG2315 Predicted translation 99.7 5.6E-13 1.2E-17 122.2 29.6 315 24-474 39-392 (566)
239 KOG2321 WD40 repeat protein [G 99.6 7.6E-14 1.6E-18 127.8 23.5 295 59-475 50-346 (703)
240 PF08662 eIF2A: Eukaryotic tra 99.6 5.3E-14 1.1E-18 119.6 21.1 152 24-184 10-186 (194)
241 KOG2314 Translation initiation 99.6 1.1E-12 2.4E-17 119.9 29.0 158 42-205 192-363 (698)
242 PRK03629 tolB translocation pr 99.6 3.8E-13 8.3E-18 131.3 28.1 215 422-652 180-408 (429)
243 PRK02889 tolB translocation pr 99.6 1.3E-13 2.7E-18 134.9 24.7 239 376-631 176-425 (427)
244 PRK04922 tolB translocation pr 99.6 1.4E-13 3E-18 135.2 24.3 236 376-630 184-432 (433)
245 PRK05137 tolB translocation pr 99.6 3.9E-13 8.4E-18 132.4 27.3 216 421-652 182-414 (435)
246 TIGR02658 TTQ_MADH_Hv methylam 99.6 4.6E-11 9.9E-16 109.3 37.3 116 82-210 27-159 (352)
247 PRK05137 tolB translocation pr 99.6 6.6E-13 1.4E-17 130.7 27.7 235 376-630 182-432 (435)
248 PF04762 IKI3: IKI3 family; I 99.6 5.5E-09 1.2E-13 110.2 57.8 507 24-657 80-691 (928)
249 PRK04922 tolB translocation pr 99.6 3.4E-13 7.3E-18 132.5 24.3 215 421-651 184-412 (433)
250 PRK02889 tolB translocation pr 99.6 2.7E-13 5.9E-18 132.6 22.8 206 421-642 176-392 (427)
251 KOG1354 Serine/threonine prote 99.6 5.9E-13 1.3E-17 114.0 21.1 237 394-647 162-431 (433)
252 COG4946 Uncharacterized protei 99.6 1.8E-10 3.9E-15 103.7 36.8 438 101-598 35-508 (668)
253 KOG1409 Uncharacterized conser 99.6 1.9E-13 4.1E-18 117.0 16.9 246 345-608 16-270 (404)
254 KOG2041 WD40 repeat protein [G 99.6 2.1E-11 4.5E-16 115.3 31.7 522 23-609 18-620 (1189)
255 PF10282 Lactonase: Lactonase, 99.6 4.6E-10 1E-14 106.6 41.4 291 326-628 13-345 (345)
256 PF10282 Lactonase: Lactonase, 99.6 3E-10 6.6E-15 107.8 39.6 221 358-586 91-345 (345)
257 KOG4547 WD40 repeat-containing 99.6 3.5E-13 7.6E-18 124.5 18.7 212 410-653 4-223 (541)
258 KOG1354 Serine/threonine prote 99.5 4.2E-13 9E-18 114.9 16.7 257 396-657 25-366 (433)
259 TIGR03300 assembly_YfgL outer 99.5 9.2E-11 2E-15 114.0 34.2 185 31-224 65-265 (377)
260 PRK01029 tolB translocation pr 99.5 6E-12 1.3E-16 122.2 25.0 199 24-226 189-411 (428)
261 KOG2314 Translation initiation 99.5 1.5E-11 3.3E-16 112.6 25.6 178 24-206 215-411 (698)
262 KOG1409 Uncharacterized conser 99.5 2.9E-12 6.3E-17 109.9 18.8 343 92-567 14-395 (404)
263 KOG4547 WD40 repeat-containing 99.5 1.1E-11 2.4E-16 114.9 23.3 188 28-219 2-221 (541)
264 PRK01029 tolB translocation pr 99.5 1.8E-11 3.9E-16 118.9 26.4 221 421-654 165-407 (428)
265 TIGR03300 assembly_YfgL outer 99.5 2.4E-10 5.1E-15 111.2 33.8 306 72-521 65-376 (377)
266 PRK04792 tolB translocation pr 99.5 2.8E-11 6.1E-16 118.7 27.3 235 377-630 199-446 (448)
267 PRK00178 tolB translocation pr 99.5 4.2E-11 9.1E-16 118.5 27.5 236 377-631 180-428 (430)
268 TIGR02658 TTQ_MADH_Hv methylam 99.5 2.1E-09 4.5E-14 98.6 35.6 259 376-657 27-337 (352)
269 TIGR02800 propeller_TolB tol-p 99.5 4.1E-11 8.9E-16 118.8 26.6 234 376-628 170-416 (417)
270 TIGR02800 propeller_TolB tol-p 99.5 6.7E-11 1.5E-15 117.3 28.1 175 41-221 171-357 (417)
271 PRK04792 tolB translocation pr 99.5 6.6E-11 1.4E-15 116.1 27.0 179 25-208 179-369 (448)
272 PRK00178 tolB translocation pr 99.4 4.2E-11 9E-16 118.5 25.5 213 422-650 180-406 (430)
273 COG2706 3-carboxymuconate cycl 99.4 4.4E-09 9.4E-14 92.2 32.5 269 375-653 15-324 (346)
274 KOG0280 Uncharacterized conser 99.4 6E-10 1.3E-14 93.9 22.2 273 324-611 44-336 (339)
275 PLN02919 haloacid dehalogenase 99.4 2E-09 4.3E-14 115.9 32.4 236 406-654 575-892 (1057)
276 KOG0280 Uncharacterized conser 99.3 6.4E-10 1.4E-14 93.7 21.2 267 376-653 46-336 (339)
277 PF15492 Nbas_N: Neuroblastoma 99.3 3.1E-09 6.7E-14 90.1 24.8 204 25-230 3-271 (282)
278 COG2706 3-carboxymuconate cycl 99.3 5.1E-08 1.1E-12 85.7 32.7 182 406-587 152-345 (346)
279 PLN02919 haloacid dehalogenase 99.3 5.6E-09 1.2E-13 112.5 33.0 253 357-612 571-892 (1057)
280 KOG4532 WD40-like repeat conta 99.3 1.7E-09 3.6E-14 90.0 21.5 228 413-651 86-332 (344)
281 KOG1064 RAVE (regulator of V-A 99.3 5.8E-11 1.3E-15 124.0 15.3 221 395-643 2207-2439(2439)
282 KOG4190 Uncharacterized conser 99.3 2.8E-11 6.2E-16 110.9 11.5 172 53-226 728-914 (1034)
283 PRK11138 outer membrane biogen 99.3 1.1E-08 2.3E-13 99.9 30.2 188 30-223 69-279 (394)
284 PRK11138 outer membrane biogen 99.3 2.4E-08 5.2E-13 97.4 31.3 136 506-649 256-393 (394)
285 KOG4532 WD40-like repeat conta 99.3 5.3E-09 1.2E-13 87.1 22.2 234 365-609 83-332 (344)
286 PRK04043 tolB translocation pr 99.2 5.5E-09 1.2E-13 100.8 24.7 189 24-219 192-401 (419)
287 KOG1064 RAVE (regulator of V-A 99.2 1.5E-10 3.2E-15 121.2 14.1 191 57-286 2205-2402(2439)
288 KOG3914 WD repeat protein WDR4 99.2 1.8E-10 3.9E-15 101.7 12.2 157 24-185 67-232 (390)
289 KOG3914 WD repeat protein WDR4 99.2 1.9E-10 4.2E-15 101.5 11.6 158 497-657 65-230 (390)
290 PRK04043 tolB translocation pr 99.2 3.9E-08 8.5E-13 95.0 28.3 213 376-609 169-401 (419)
291 KOG0309 Conserved WD40 repeat- 99.2 6.5E-10 1.4E-14 105.9 14.4 203 15-219 20-233 (1081)
292 KOG3617 WD40 and TPR repeat-co 99.2 4.4E-09 9.4E-14 102.1 19.7 497 105-658 18-593 (1416)
293 KOG0309 Conserved WD40 repeat- 99.1 7.9E-10 1.7E-14 105.3 14.1 289 356-656 27-345 (1081)
294 PF07433 DUF1513: Protein of u 99.1 1.1E-07 2.4E-12 83.9 25.2 204 22-230 7-259 (305)
295 PF00930 DPPIV_N: Dipeptidyl p 99.1 9.4E-07 2E-11 84.5 33.2 164 28-205 1-200 (353)
296 PF08450 SGL: SMP-30/Gluconola 99.1 8.8E-07 1.9E-11 80.3 31.2 216 406-638 7-243 (246)
297 KOG4190 Uncharacterized conser 99.1 7.6E-10 1.6E-14 101.8 10.5 250 389-653 728-991 (1034)
298 COG5170 CDC55 Serine/threonine 99.1 5.5E-09 1.2E-13 88.9 14.7 250 397-651 27-368 (460)
299 KOG4649 PQQ (pyrrolo-quinoline 99.1 1.8E-06 4E-11 72.2 28.8 110 114-227 23-132 (354)
300 PF08450 SGL: SMP-30/Gluconola 99.1 1.2E-06 2.7E-11 79.3 31.0 219 358-597 4-244 (246)
301 PF13360 PQQ_2: PQQ-like domai 99.1 6E-07 1.3E-11 81.4 28.5 220 375-615 2-237 (238)
302 PF13360 PQQ_2: PQQ-like domai 99.0 2.3E-07 5E-12 84.1 25.6 218 39-287 2-235 (238)
303 KOG2695 WD40 repeat protein [G 99.0 9.2E-10 2E-14 95.0 8.6 169 448-629 218-401 (425)
304 PF15492 Nbas_N: Neuroblastoma 99.0 4.5E-07 9.7E-12 77.4 23.5 201 447-655 3-264 (282)
305 KOG4649 PQQ (pyrrolo-quinoline 99.0 6.6E-06 1.4E-10 69.0 29.5 148 68-219 18-166 (354)
306 PF06433 Me-amine-dh_H: Methyl 99.0 7.2E-06 1.6E-10 73.6 31.6 174 41-221 18-216 (342)
307 KOG0882 Cyclophilin-related pe 99.0 2.3E-08 5.1E-13 89.8 16.0 281 353-647 9-369 (558)
308 PF07433 DUF1513: Protein of u 99.0 3.1E-06 6.8E-11 74.9 28.3 146 64-209 8-183 (305)
309 KOG4714 Nucleoporin [Nuclear s 98.9 7E-09 1.5E-13 86.0 10.1 165 54-219 83-255 (319)
310 PF06433 Me-amine-dh_H: Methyl 98.9 9.4E-06 2E-10 72.9 28.6 239 24-289 40-327 (342)
311 KOG2114 Vacuolar assembly/sort 98.9 5.6E-07 1.2E-11 88.3 22.6 215 406-624 31-260 (933)
312 PRK02888 nitrous-oxide reducta 98.9 4.7E-06 1E-10 81.3 28.3 182 408-609 202-405 (635)
313 COG5170 CDC55 Serine/threonine 98.9 1.1E-07 2.5E-12 81.1 15.3 78 101-178 25-119 (460)
314 PF00400 WD40: WD domain, G-be 98.9 1E-08 2.2E-13 61.3 6.4 39 50-88 1-39 (39)
315 KOG2695 WD40 repeat protein [G 98.8 1.2E-08 2.5E-13 88.4 8.1 150 35-187 229-387 (425)
316 PF00400 WD40: WD domain, G-be 98.8 1.5E-08 3.2E-13 60.5 6.3 39 610-648 1-39 (39)
317 KOG1645 RING-finger-containing 98.8 4.7E-07 1E-11 80.5 17.5 260 378-651 175-462 (463)
318 KOG3617 WD40 and TPR repeat-co 98.8 8.2E-07 1.8E-11 86.9 20.7 107 24-132 20-131 (1416)
319 KOG1275 PAB-dependent poly(A) 98.8 1.3E-07 2.8E-12 93.2 15.4 179 33-217 150-341 (1118)
320 KOG0882 Cyclophilin-related pe 98.8 3.7E-08 8E-13 88.6 10.7 212 440-661 8-242 (558)
321 KOG1645 RING-finger-containing 98.8 1.2E-06 2.5E-11 78.1 19.1 94 84-179 175-269 (463)
322 KOG4714 Nucleoporin [Nuclear s 98.8 2E-07 4.3E-12 77.7 12.4 201 264-473 47-255 (319)
323 cd00216 PQQ_DH Dehydrogenases 98.8 3.9E-05 8.5E-10 76.8 31.2 231 367-618 111-434 (488)
324 KOG3621 WD40 repeat-containing 98.7 9.8E-06 2.1E-10 78.2 24.7 291 350-659 29-362 (726)
325 cd00216 PQQ_DH Dehydrogenases 98.7 6.6E-05 1.4E-09 75.2 32.2 194 30-226 61-327 (488)
326 KOG1275 PAB-dependent poly(A) 98.7 3.1E-07 6.7E-12 90.6 14.8 178 456-648 149-340 (1118)
327 PF00930 DPPIV_N: Dipeptidyl p 98.7 4.6E-05 1E-09 73.0 29.5 67 69-137 1-76 (353)
328 KOG1897 Damage-specific DNA bi 98.7 0.0007 1.5E-08 68.7 44.6 433 39-524 469-942 (1096)
329 PRK02888 nitrous-oxide reducta 98.7 2.7E-05 5.9E-10 76.1 25.8 193 17-219 188-405 (635)
330 KOG3621 WD40 repeat-containing 98.6 4.3E-06 9.4E-11 80.6 19.4 195 26-226 40-253 (726)
331 KOG2114 Vacuolar assembly/sort 98.6 7.7E-06 1.7E-10 80.7 20.9 202 23-228 27-253 (933)
332 KOG2066 Vacuolar assembly/sort 98.6 1.4E-06 3.1E-11 85.0 15.9 181 442-650 40-233 (846)
333 PF08596 Lgl_C: Lethal giant l 98.6 0.00032 7E-09 66.9 31.0 271 104-454 3-319 (395)
334 KOG1920 IkappaB kinase complex 98.6 7.8E-05 1.7E-09 77.0 27.1 243 352-611 67-325 (1265)
335 KOG1832 HIV-1 Vpr-binding prot 98.6 3.4E-08 7.3E-13 96.7 3.2 201 389-616 1094-1299(1516)
336 PF04841 Vps16_N: Vps16, N-ter 98.5 0.00026 5.7E-09 68.7 28.6 193 25-227 34-255 (410)
337 PF04053 Coatomer_WDAD: Coatom 98.5 7.8E-05 1.7E-09 72.1 24.1 173 23-214 36-219 (443)
338 PF06977 SdiA-regulated: SdiA- 98.5 0.00019 4.2E-09 63.1 24.2 190 22-215 24-247 (248)
339 PF06977 SdiA-regulated: SdiA- 98.5 0.00044 9.6E-09 60.8 26.3 208 391-605 16-247 (248)
340 KOG2066 Vacuolar assembly/sort 98.5 8.5E-06 1.8E-10 79.8 16.9 176 24-218 44-233 (846)
341 KOG1920 IkappaB kinase complex 98.5 0.00061 1.3E-08 70.8 30.6 284 59-383 67-364 (1265)
342 KOG1832 HIV-1 Vpr-binding prot 98.5 1.4E-07 3E-12 92.6 4.9 179 53-242 1094-1279(1516)
343 PF11768 DUF3312: Protein of u 98.4 0.001 2.2E-08 63.8 28.3 78 489-568 254-331 (545)
344 COG3391 Uncharacterized conser 98.4 0.00028 6E-09 68.1 25.5 205 23-229 77-294 (381)
345 KOG1897 Damage-specific DNA bi 98.4 0.0036 7.8E-08 63.9 53.1 464 83-605 471-1001(1096)
346 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 0.0037 7.9E-08 63.1 33.3 61 558-619 441-501 (527)
347 COG3391 Uncharacterized conser 98.4 0.0028 6E-08 61.3 30.9 236 406-654 38-287 (381)
348 PF04053 Coatomer_WDAD: Coatom 98.3 0.0013 2.9E-08 63.8 26.6 224 399-658 35-270 (443)
349 COG0823 TolB Periplasmic compo 98.3 7.5E-05 1.6E-09 72.0 17.6 193 431-637 182-386 (425)
350 PF14583 Pectate_lyase22: Olig 98.2 0.0042 9.2E-08 57.6 31.5 298 25-333 41-380 (386)
351 COG0823 TolB Periplasmic compo 98.2 0.00029 6.3E-09 68.0 20.9 182 406-599 200-390 (425)
352 PF11768 DUF3312: Protein of u 98.2 6.6E-05 1.4E-09 71.6 16.0 91 42-134 238-331 (545)
353 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0091 2E-07 60.3 36.9 109 30-141 69-198 (527)
354 PF14655 RAB3GAP2_N: Rab3 GTPa 98.2 0.00034 7.4E-09 66.3 20.2 94 483-576 296-408 (415)
355 PF02897 Peptidase_S9_N: Proly 98.2 0.0051 1.1E-07 61.0 29.6 202 21-228 125-367 (414)
356 TIGR03074 PQQ_membr_DH membran 98.2 0.014 3E-07 61.2 34.8 198 30-228 194-487 (764)
357 PF08596 Lgl_C: Lethal giant l 98.2 0.0018 3.9E-08 62.0 24.6 211 443-655 3-295 (395)
358 PF14583 Pectate_lyase22: Olig 98.1 0.007 1.5E-07 56.2 29.4 275 360-650 42-381 (386)
359 PF03178 CPSF_A: CPSF A subuni 98.1 0.0034 7.3E-08 59.6 26.0 177 376-566 2-202 (321)
360 PF00780 CNH: CNH domain; Int 98.1 0.0041 8.9E-08 57.6 26.1 231 406-655 3-260 (275)
361 PF03178 CPSF_A: CPSF A subuni 98.1 0.0077 1.7E-07 57.1 27.8 219 422-649 3-264 (321)
362 PF00780 CNH: CNH domain; Int 98.1 0.0099 2.1E-07 55.1 27.3 223 28-290 4-263 (275)
363 PRK13616 lipoprotein LpqB; Pro 98.1 0.00039 8.5E-09 70.3 18.8 180 23-214 353-564 (591)
364 PF08553 VID27: VID27 cytoplas 98.0 0.0028 6.1E-08 65.2 24.5 143 71-217 492-646 (794)
365 COG3386 Gluconolactonase [Carb 98.0 0.0057 1.2E-07 56.2 24.0 221 406-638 32-273 (307)
366 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.0046 9.9E-08 58.9 23.7 348 64-438 5-407 (415)
367 PF04841 Vps16_N: Vps16, N-ter 98.0 0.019 4E-07 56.1 28.3 214 377-606 62-285 (410)
368 COG3386 Gluconolactonase [Carb 98.0 0.013 2.8E-07 54.0 25.3 210 24-239 29-264 (307)
369 TIGR03074 PQQ_membr_DH membran 98.0 0.033 7.2E-07 58.4 37.6 111 72-185 194-353 (764)
370 PF08553 VID27: VID27 cytoplas 97.9 0.0011 2.3E-08 68.2 19.1 148 411-565 494-646 (794)
371 PRK13616 lipoprotein LpqB; Pro 97.9 0.003 6.4E-08 64.1 21.0 148 60-217 349-524 (591)
372 KOG4640 Anaphase-promoting com 97.9 8.2E-05 1.8E-09 71.2 9.1 92 495-587 21-114 (665)
373 KOG1008 Uncharacterized conser 97.8 4.9E-06 1.1E-10 79.1 1.0 198 443-651 58-276 (783)
374 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0033 7.2E-08 46.2 15.1 101 497-604 2-110 (111)
375 COG3490 Uncharacterized protei 97.8 0.0027 6E-08 54.8 16.9 196 15-217 111-347 (366)
376 KOG4640 Anaphase-promoting com 97.8 0.00011 2.4E-09 70.3 9.3 94 60-154 20-115 (665)
377 PF02897 Peptidase_S9_N: Proly 97.8 0.046 1E-06 54.3 31.0 240 406-654 131-408 (414)
378 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0048 1E-07 45.4 15.1 101 444-561 2-109 (111)
379 KOG4499 Ca2+-binding protein R 97.8 0.016 3.4E-07 48.7 19.7 215 410-630 26-263 (310)
380 KOG1008 Uncharacterized conser 97.7 9E-06 2E-10 77.4 0.9 202 398-608 58-275 (783)
381 PF05096 Glu_cyclase_2: Glutam 97.7 0.032 6.9E-07 49.1 23.7 177 25-208 50-250 (264)
382 smart00320 WD40 WD40 repeats. 97.7 0.00015 3.2E-09 43.0 5.6 39 50-88 2-40 (40)
383 smart00320 WD40 WD40 repeats. 97.6 0.00018 3.9E-09 42.6 5.7 39 610-648 2-40 (40)
384 PHA02713 hypothetical protein; 97.6 0.0056 1.2E-07 62.5 18.4 146 504-653 350-536 (557)
385 PF10647 Gmad1: Lipoprotein Lp 97.6 0.035 7.6E-07 50.1 21.0 147 22-172 26-192 (253)
386 PF14727 PHTB1_N: PTHB1 N-term 97.5 0.1 2.2E-06 50.2 27.8 281 315-607 36-359 (418)
387 KOG2444 WD40 repeat protein [G 97.5 0.00016 3.4E-09 60.1 4.6 104 505-608 69-177 (238)
388 KOG2444 WD40 repeat protein [G 97.5 0.00015 3.3E-09 60.2 4.4 143 509-654 33-181 (238)
389 KOG2395 Protein involved in va 97.5 0.0072 1.6E-07 57.2 15.6 152 407-565 342-499 (644)
390 PF05694 SBP56: 56kDa selenium 97.4 0.11 2.4E-06 49.1 23.3 193 29-221 85-345 (461)
391 KOG2079 Vacuolar assembly/sort 97.4 0.0029 6.2E-08 65.2 13.3 112 62-175 89-202 (1206)
392 COG3204 Uncharacterized protei 97.4 0.053 1.2E-06 47.7 19.0 178 185-386 82-265 (316)
393 KOG2395 Protein involved in va 97.4 0.0027 5.8E-08 60.0 11.7 144 70-218 343-500 (644)
394 PF10647 Gmad1: Lipoprotein Lp 97.3 0.093 2E-06 47.4 21.0 147 443-600 25-187 (253)
395 PHA02713 hypothetical protein; 97.3 0.024 5.1E-07 58.1 19.1 197 411-620 304-545 (557)
396 COG3204 Uncharacterized protei 97.3 0.1 2.2E-06 46.0 19.5 162 56-219 81-264 (316)
397 PF14870 PSII_BNR: Photosynthe 97.3 0.13 2.9E-06 47.1 26.9 154 490-647 140-301 (302)
398 KOG4441 Proteins containing BT 97.3 0.039 8.4E-07 56.3 19.6 227 410-652 284-548 (571)
399 COG3490 Uncharacterized protei 97.1 0.12 2.5E-06 45.3 17.6 171 448-639 42-244 (366)
400 KOG2079 Vacuolar assembly/sort 97.1 0.0026 5.6E-08 65.5 8.9 101 505-607 98-202 (1206)
401 PRK10115 protease 2; Provision 97.0 0.6 1.3E-05 49.3 33.8 192 20-217 127-343 (686)
402 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0038 8.2E-08 38.0 5.5 34 60-94 11-44 (47)
403 KOG4441 Proteins containing BT 96.9 0.17 3.7E-06 51.8 20.1 228 365-611 284-549 (571)
404 PRK13684 Ycf48-like protein; P 96.8 0.44 9.6E-06 45.3 21.3 150 60-217 172-330 (334)
405 PF05694 SBP56: 56kDa selenium 96.8 0.17 3.7E-06 47.8 17.6 194 454-653 88-345 (461)
406 PF05096 Glu_cyclase_2: Glutam 96.8 0.33 7.1E-06 43.0 26.9 182 443-639 46-249 (264)
407 KOG4499 Ca2+-binding protein R 96.8 0.28 6.1E-06 41.6 19.5 104 443-546 159-263 (310)
408 PF14870 PSII_BNR: Photosynthe 96.8 0.45 9.7E-06 43.8 27.7 138 99-241 141-287 (302)
409 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0067 1.4E-07 37.0 5.1 35 535-570 10-44 (47)
410 COG3292 Predicted periplasmic 96.5 0.92 2E-05 44.4 23.7 71 101-177 163-234 (671)
411 PHA03098 kelch-like protein; P 96.5 0.18 3.9E-06 52.1 17.5 185 412-611 296-514 (534)
412 PLN00033 photosystem II stabil 96.5 0.71 1.5E-05 44.6 19.8 141 24-173 243-396 (398)
413 PHA03098 kelch-like protein; P 96.4 0.25 5.4E-06 51.0 17.9 184 29-221 293-514 (534)
414 PF14761 HPS3_N: Hermansky-Pud 96.2 0.63 1.4E-05 39.5 16.2 110 24-135 22-166 (215)
415 PF08728 CRT10: CRT10; InterP 96.2 0.32 6.9E-06 49.8 16.5 149 25-175 44-245 (717)
416 KOG3630 Nuclear pore complex, 96.2 0.097 2.1E-06 55.0 12.8 143 494-638 100-261 (1405)
417 PF15390 DUF4613: Domain of un 96.1 0.5 1.1E-05 46.4 16.5 115 61-177 57-187 (671)
418 PF10433 MMS1_N: Mono-function 96.1 2 4.3E-05 44.0 43.4 252 362-630 218-503 (504)
419 KOG1916 Nuclear protein, conta 96.1 0.0033 7.2E-08 63.4 2.3 170 438-613 129-328 (1283)
420 PF14727 PHTB1_N: PTHB1 N-term 96.1 1.6 3.4E-05 42.4 31.9 274 364-654 35-364 (418)
421 PHA02790 Kelch-like protein; P 96.0 0.74 1.6E-05 46.5 18.4 183 411-611 272-473 (480)
422 TIGR02604 Piru_Ver_Nterm putat 96.0 0.34 7.5E-06 46.9 15.5 144 495-641 14-204 (367)
423 COG5276 Uncharacterized conser 95.9 1.1 2.4E-05 39.8 27.6 266 365-649 95-368 (370)
424 TIGR02604 Piru_Ver_Nterm putat 95.9 0.55 1.2E-05 45.5 16.6 97 22-121 16-142 (367)
425 KOG2377 Uncharacterized conser 95.8 0.32 7E-06 45.7 13.3 154 24-179 27-188 (657)
426 COG3823 Glutamine cyclotransfe 95.8 0.82 1.8E-05 38.2 14.0 171 412-596 57-247 (262)
427 KOG3630 Nuclear pore complex, 95.8 0.19 4.2E-06 53.0 12.9 145 60-207 100-262 (1405)
428 PF12234 Rav1p_C: RAVE protein 95.7 0.4 8.7E-06 48.6 14.8 116 532-649 25-155 (631)
429 PF10168 Nup88: Nuclear pore c 95.6 3.6 7.8E-05 43.4 26.0 95 101-220 83-181 (717)
430 PHA02790 Kelch-like protein; P 95.5 1 2.2E-05 45.6 17.1 142 504-652 317-472 (480)
431 smart00036 CNH Domain found in 95.5 2.2 4.8E-05 39.9 28.0 238 367-618 14-280 (302)
432 PF10168 Nup88: Nuclear pore c 95.4 4.3 9.3E-05 42.9 23.6 95 60-177 84-180 (717)
433 KOG1898 Splicing factor 3b, su 95.4 4.6 9.9E-05 43.1 38.2 174 422-608 854-1048(1205)
434 PF12234 Rav1p_C: RAVE protein 95.3 1.1 2.5E-05 45.6 16.2 118 98-217 25-155 (631)
435 KOG2280 Vacuolar assembly/sort 95.3 0.92 2E-05 46.0 15.1 184 421-617 64-255 (829)
436 PF15390 DUF4613: Domain of un 95.2 1.1 2.3E-05 44.2 15.0 125 440-565 55-185 (671)
437 PRK10115 protease 2; Provision 95.2 5.4 0.00012 42.5 30.5 235 406-653 134-397 (686)
438 PF12657 TFIIIC_delta: Transcr 95.0 0.14 3.1E-06 43.0 8.1 32 103-134 86-123 (173)
439 PF07995 GSDH: Glucose / Sorbo 95.0 3.3 7.2E-05 39.4 25.2 234 400-645 5-330 (331)
440 KOG1916 Nuclear protein, conta 95.0 0.032 6.9E-07 56.7 4.6 140 41-181 154-328 (1283)
441 KOG2280 Vacuolar assembly/sort 95.0 3.1 6.8E-05 42.4 17.8 180 41-227 65-255 (829)
442 KOG2247 WD40 repeat-containing 95.0 0.019 4.1E-07 54.0 2.8 274 406-701 42-327 (615)
443 PF10313 DUF2415: Uncharacteri 94.8 0.17 3.8E-06 29.8 5.4 31 61-91 1-34 (43)
444 PF10313 DUF2415: Uncharacteri 94.8 0.14 3.1E-06 30.1 5.1 32 103-134 1-35 (43)
445 KOG1896 mRNA cleavage and poly 94.7 7.8 0.00017 42.2 47.8 187 418-608 1001-1213(1366)
446 KOG2247 WD40 repeat-containing 94.7 0.0046 9.9E-08 57.9 -1.7 137 25-167 40-179 (615)
447 PRK13684 Ycf48-like protein; P 94.6 4.2 9.2E-05 38.7 27.6 151 494-650 172-331 (334)
448 PF13449 Phytase-like: Esteras 94.6 4.1 8.8E-05 38.7 17.5 152 441-595 19-231 (326)
449 KOG3616 Selective LIM binding 94.6 2 4.3E-05 43.6 15.3 78 534-616 335-413 (1636)
450 COG4590 ABC-type uncharacteriz 94.4 0.25 5.4E-06 46.4 8.5 157 21-181 222-391 (733)
451 PF08728 CRT10: CRT10; InterP 94.4 2.5 5.4E-05 43.7 16.0 111 496-607 102-245 (717)
452 PLN00033 photosystem II stabil 94.2 5.8 0.00013 38.6 22.6 144 63-215 241-396 (398)
453 PF07569 Hira: TUP1-like enhan 94.2 0.5 1.1E-05 41.4 9.7 66 585-651 17-96 (219)
454 KOG1898 Splicing factor 3b, su 94.2 9.6 0.00021 40.9 35.0 140 515-658 911-1056(1205)
455 COG5167 VID27 Protein involved 94.1 1.5 3.2E-05 42.3 12.9 149 407-565 476-631 (776)
456 KOG1900 Nuclear pore complex, 93.7 13 0.00029 41.0 22.0 157 59-219 77-273 (1311)
457 PF12768 Rax2: Cortical protei 93.7 2.2 4.9E-05 38.8 13.0 97 81-177 15-124 (281)
458 PF07569 Hira: TUP1-like enhan 93.7 0.61 1.3E-05 40.9 9.3 67 68-135 18-98 (219)
459 COG1520 FOG: WD40-like repeat 93.7 7.5 0.00016 37.9 20.5 196 30-228 68-278 (370)
460 PF14761 HPS3_N: Hermansky-Pud 93.6 4.1 8.9E-05 34.8 14.5 110 64-178 21-165 (215)
461 KOG3616 Selective LIM binding 93.5 1.1 2.3E-05 45.3 11.3 70 60-132 14-83 (1636)
462 KOG2377 Uncharacterized conser 93.5 7.4 0.00016 37.2 18.6 139 64-207 26-172 (657)
463 PF12768 Rax2: Cortical protei 93.4 5.3 0.00011 36.5 14.8 113 41-154 17-146 (281)
464 COG5167 VID27 Protein involved 93.4 3.4 7.3E-05 40.0 13.8 144 25-175 473-631 (776)
465 PF07995 GSDH: Glucose / Sorbo 93.4 7.6 0.00016 37.0 28.8 69 493-561 251-330 (331)
466 PF03022 MRJP: Major royal jel 93.2 7 0.00015 36.2 22.7 179 25-206 6-253 (287)
467 PF13449 Phytase-like: Esteras 93.0 8.4 0.00018 36.6 21.6 135 23-158 23-228 (326)
468 COG3823 Glutamine cyclotransfe 93.0 4.9 0.00011 33.9 13.5 70 160-229 58-130 (262)
469 COG4590 ABC-type uncharacteriz 93.0 0.11 2.3E-06 48.6 3.6 169 532-701 216-397 (733)
470 KOG1900 Nuclear pore complex, 92.7 2.4 5.2E-05 46.3 13.2 146 417-567 95-273 (1311)
471 PF14781 BBS2_N: Ciliary BBSom 92.7 3.8 8.2E-05 31.9 13.0 114 66-183 4-132 (136)
472 PF14781 BBS2_N: Ciliary BBSom 92.7 3.9 8.4E-05 31.8 13.7 113 500-615 4-132 (136)
473 PF08801 Nucleoporin_N: Nup133 92.5 6.1 0.00013 39.4 15.6 168 25-219 31-220 (422)
474 TIGR02276 beta_rpt_yvtn 40-res 92.3 0.92 2E-05 26.9 6.1 39 29-68 1-41 (42)
475 TIGR02276 beta_rpt_yvtn 40-res 92.0 1.2 2.6E-05 26.4 6.4 40 70-110 1-41 (42)
476 TIGR03118 PEPCTERM_chp_1 conse 91.9 9.6 0.00021 34.6 22.5 211 3-230 19-291 (336)
477 PF10214 Rrn6: RNA polymerase 91.7 23 0.00049 38.6 26.8 169 439-609 77-277 (765)
478 PF12657 TFIIIC_delta: Transcr 91.2 1.9 4E-05 36.3 8.8 33 145-177 86-122 (173)
479 TIGR03548 mutarot_permut cycli 91.1 14 0.00031 35.1 17.3 106 30-136 72-198 (323)
480 COG3292 Predicted periplasmic 91.0 18 0.00039 36.0 26.6 71 143-219 163-234 (671)
481 PRK14131 N-acetylneuraminic ac 90.8 17 0.00037 35.5 19.7 53 587-641 277-353 (376)
482 PLN02153 epithiospecifier prot 90.5 17 0.00037 34.9 21.1 105 30-136 32-171 (341)
483 PF11715 Nup160: Nucleoporin N 90.1 6 0.00013 41.2 13.3 71 504-574 156-256 (547)
484 COG1770 PtrB Protease II [Amin 89.9 25 0.00055 36.0 26.1 200 18-223 127-353 (682)
485 TIGR03606 non_repeat_PQQ dehyd 89.8 18 0.00039 35.9 15.1 102 22-123 32-166 (454)
486 TIGR03547 muta_rot_YjhT mutatr 89.8 20 0.00043 34.6 21.6 39 601-641 291-331 (346)
487 KOG4460 Nuclear pore complex, 89.7 9.9 0.00022 37.2 12.7 102 61-185 104-207 (741)
488 PF05935 Arylsulfotrans: Aryls 89.6 26 0.00055 35.6 17.4 143 40-188 128-313 (477)
489 smart00036 CNH Domain found in 89.5 18 0.0004 33.9 27.5 61 28-90 10-73 (302)
490 PLN02193 nitrile-specifier pro 89.4 26 0.00057 35.5 19.4 193 453-653 175-413 (470)
491 PF05935 Arylsulfotrans: Aryls 89.4 26 0.00057 35.5 18.6 151 500-655 153-372 (477)
492 KOG1983 Tomosyn and related SN 89.3 42 0.0009 37.6 20.4 105 23-133 39-145 (993)
493 PF03088 Str_synth: Strictosid 88.9 6 0.00013 28.5 8.4 38 41-79 38-75 (89)
494 COG5276 Uncharacterized conser 88.9 17 0.00038 32.7 28.7 151 60-221 86-244 (370)
495 TIGR03547 muta_rot_YjhT mutatr 88.8 24 0.00051 34.1 17.7 54 28-81 61-128 (346)
496 PF07676 PD40: WD40-like Beta 88.7 2.3 5E-05 24.7 5.4 35 53-87 1-38 (39)
497 TIGR03606 non_repeat_PQQ dehyd 88.4 28 0.00061 34.6 15.7 56 101-156 28-90 (454)
498 KOG1896 mRNA cleavage and poly 88.2 47 0.001 36.8 42.8 143 507-653 1047-1216(1366)
499 PLN02153 epithiospecifier prot 87.6 28 0.0006 33.5 22.8 105 504-611 136-287 (341)
500 PRK14131 N-acetylneuraminic ac 87.1 32 0.00069 33.7 18.1 14 422-435 190-203 (376)
No 1
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-92 Score=651.11 Aligned_cols=667 Identities=47% Similarity=0.771 Sum_probs=610.3
Q ss_pred CCCcccccceeeceeeeeeeeccceEEcCCCCEEEEeeCCeEEEEEccCCeE-EEeec-CCCccEEEEEEccCCCEEEEE
Q 005254 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASI-KSTIE-GGSDTITALALSPDDKLLFSS 78 (706)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~-~~~l~-~~~~~i~~l~~s~~~~~l~s~ 78 (706)
||++.+|+.|+....+.|+|++|.+++|++|+.|++.+++.|.+.|+.+++. +.... .....|++++++||+++|+++
T Consensus 1 ma~~~~Kk~ya~ers~epiYtGG~~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a 80 (775)
T KOG0319|consen 1 MAPMTEKKSYALERSLEPIYTGGPVAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTA 80 (775)
T ss_pred CCccchhhhhhhhhcccceecCCceeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEe
Confidence 9999999999999999999999999999999999999999999999999988 33333 345689999999999999999
Q ss_pred eccCeEEEEECCCCeEEEEeec-cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCC
Q 005254 79 GHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTD 157 (706)
Q Consensus 79 ~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 157 (706)
+....+++|++++++.++.++. |.+||..++|+|.+..|++|+.|+.++|||+..+.+.+.|++|.+.|..+.|+|+..
T Consensus 81 ~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 81 SRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN 160 (775)
T ss_pred eccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc
Confidence 9999999999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCeEEEEECCCCee-EEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEE
Q 005254 158 KSLLFSGSDDATVRVWDLLAKKC-VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236 (706)
Q Consensus 158 ~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 236 (706)
..+|++|..|+++++||+++... +..+..|.+.|++++|++|+..+++++.|..+.+||+.+.+..+.++..+.+.++.
T Consensus 161 ~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv 240 (775)
T KOG0319|consen 161 RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVV 240 (775)
T ss_pred hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEE
Confidence 88999999999999999986554 78889999999999999999999999999999999999999999999999999998
Q ss_pred eeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCC
Q 005254 237 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN 316 (706)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
..+++.. .....+++.|.+|.++.|+.+++........+. ...+..+...+..
T Consensus 241 ~l~~~~~------------------~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~---------~~e~~~~~~~~~~ 293 (775)
T KOG0319|consen 241 RLREELG------------------GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD---------SEEIDHLLAIESM 293 (775)
T ss_pred EechhcC------------------CcceEEEEecCCceEEEEecccchhhhhhccCC---------chhhhcceecccc
Confidence 8777211 113489999999999999999985443332221 2227888889999
Q ss_pred CeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCc
Q 005254 317 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS 396 (706)
Q Consensus 317 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~ 396 (706)
..+++.+.++++.+|+.. ++...+.+.+++++|.+++|..++.++++++++.+.+++|+..+..+. .+.+|.
T Consensus 294 ~~~l~vtaeQnl~l~d~~-------~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~ 365 (775)
T KOG0319|consen 294 SQLLLVTAEQNLFLYDED-------ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHT 365 (775)
T ss_pred CceEEEEccceEEEEEcc-------ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCch
Confidence 999999999999999655 556778999999999999999999999999999999999999988887 999999
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc----eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEec
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 472 (706)
..+.+++ ....+ .++++|+.|.++++|.++++ .++....+|.+.|.+++++..+..++++++.|+++++|++.
T Consensus 366 e~vlSL~--~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 366 EAVLSLD--VWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred hheeeee--ecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence 9999998 55555 55999999999999977443 34556678999999999999988999999999999999998
Q ss_pred CCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEE
Q 005254 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 552 (706)
..++... +...........|...|++++++|+.+++|+|+.|++.+||+++......++.+|...|.++.|+|..+.++
T Consensus 443 ~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~la 521 (775)
T KOG0319|consen 443 KSKETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLA 521 (775)
T ss_pred Ccccccc-cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeE
Confidence 8433222 444445556678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCC
Q 005254 553 TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT 632 (706)
Q Consensus 553 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 632 (706)
+++.|++|+||.+.+..|++++.||...|..+.|-.+|+.|++++.||.+++|++++++|+.++..|.+.|++++.++.+
T Consensus 522 T~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~ 601 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLL 601 (775)
T ss_pred eccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCchhHHHHHHHHHHHHHHhcchhhhhhhccchhHhhheeeecCCcchHHHHHHhhhC
Q 005254 633 EMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706 (706)
Q Consensus 633 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (706)
.+++||+.||.|.+|.=.+....++...++++.++++++++..+.+.+|.+++.+++++.+|+.+|++++.+||
T Consensus 602 ~~~~tgg~Dg~i~~wkD~Te~~~~ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tLd~P~~~f~vi~~~~r 675 (775)
T KOG0319|consen 602 DMFVTGGGDGRIIFWKDVTEEEQNEEQEKREEAIEQEQELENLLSQKRYTKAFVLALTLDKPHLVFTVINALYR 675 (775)
T ss_pred ceeEecCCCeEEEEeecCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhccCchhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887
No 2
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-62 Score=449.81 Aligned_cols=581 Identities=22% Similarity=0.365 Sum_probs=477.1
Q ss_pred cccceeeceeeeeeeeccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEE
Q 005254 6 LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85 (706)
Q Consensus 6 l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~ 85 (706)
||+.|+.++.++.+|..++++|++||.-+++..++.+.++|+++++.....-.+...|++++.||+|.+|++..+.|...
T Consensus 1 Mk~efrfsNllGTvyr~Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~ 80 (893)
T KOG0291|consen 1 MKTEFRFSNLLGTVYRAGNLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRAL 80 (893)
T ss_pred CccccchhhcccceeecCcEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEE
Confidence 57899999999999999999999999999999999999999998876543445778999999999999999999999999
Q ss_pred EEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe--------EEEEeeCCCCcEEEEEEcCCCC
Q 005254 86 VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF--------CTHYFKGHKGVVSSILFHPDTD 157 (706)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~ 157 (706)
+-++.....++.+. .+.+|.++.|||||+++|++.. +.+.||...... ...++.+|...|.++.|+.|.+
T Consensus 81 lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr 158 (893)
T KOG0291|consen 81 LVSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR 158 (893)
T ss_pred EEecccceeeEEEe-ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc
Confidence 99999988888888 5689999999999999998864 779999875432 3355678999999999999877
Q ss_pred ceEEEEEecCCeEEEEECCCCee--EEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCc--ceeeecCcceee
Q 005254 158 KSLLFSGSDDATVRVWDLLAKKC--VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS--CKLTVPTYEMVE 233 (706)
Q Consensus 158 ~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~--~~~~~~~~~~~~ 233 (706)
. +++|+.|..+++|+++..+. ...+.+|.+.|.+.-|..+...+++.+.||.+.+|.....- ....-..
T Consensus 159 ~--l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd----- 231 (893)
T KOG0291|consen 159 L--LVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKD----- 231 (893)
T ss_pred e--EEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccc-----
Confidence 5 99999999999999987665 56788999999999999999999999999999999876431 0000000
Q ss_pred eEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCe-EEEEECCCCeEEeeccCccccccccCCCccceeEEEE
Q 005254 234 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI-VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV 312 (706)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (706)
.+|. .......-++... -.+|.... ..-..+....+++..+
T Consensus 232 -----~eg~--------------------~d~~~~~~~Eek~~~~~~~k~~-------------k~~ln~~~~kvtaa~f 273 (893)
T KOG0291|consen 232 -----EEGS--------------------DDEEMDEDGEEKTHKIFWYKTK-------------KHYLNQNSSKVTAAAF 273 (893)
T ss_pred -----cccc--------------------ccccccccchhhhcceEEEEEE-------------eeeecccccceeeeec
Confidence 0000 0000000000000 00111000 0112223356788899
Q ss_pred ccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEec-CCcEEEEeCCCceeeEe
Q 005254 313 LPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN-IEQVQVYDLSSMSCSYV 391 (706)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-~~~i~~~d~~~~~~~~~ 391 (706)
.+....++++-..|...+|.+.. ......+.-...+|..+.+.. .+.+++.++. -|++.+|+..+...+..
T Consensus 274 H~~t~~lvvgFssG~f~LyelP~-------f~lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlK 345 (893)
T KOG0291|consen 274 HKGTNLLVVGFSSGEFGLYELPD-------FNLIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLK 345 (893)
T ss_pred cCCceEEEEEecCCeeEEEecCC-------ceEEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeee
Confidence 99999999999999999998874 445566666678888888876 6777777765 48999999999999999
Q ss_pred eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEe
Q 005254 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 392 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
.++|...+.+++ ++|+++. +++|++||.|++||..++-++.++..|++.|+++.|+..++ .+++.+-||+|+.||+
T Consensus 346 QQgH~~~i~~l~--YSpDgq~-iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 346 QQGHSDRITSLA--YSPDGQL-IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDL 421 (893)
T ss_pred ccccccceeeEE--ECCCCcE-EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeee
Confidence 999999999999 9999988 99999999999999999999999999999999999999987 8999999999999999
Q ss_pred cCCCCCCCcccccceeEEE-eecCcceEEEEEcCCCCEEEEeeCCC-cEEEEeCCCccEEEEEeecCCcEEEEEEccCCC
Q 005254 472 DGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDR-TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ 549 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 549 (706)
.... ....+ ........|++..|.|.++++|+.|. .|.+|++++|+.+..+.+|.++|.+++|+|++.
T Consensus 422 kRYr----------NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~ 491 (893)
T KOG0291|consen 422 KRYR----------NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS 491 (893)
T ss_pred cccc----------eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC
Confidence 8653 22222 22334568899999999999999886 599999999999999999999999999999999
Q ss_pred EEEEecCCCcEEEEEcCCCc-eEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc----------
Q 005254 550 VVITASGDKTIKIWSISDGS-CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK---------- 618 (706)
Q Consensus 550 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------- 618 (706)
.|++++.|.+|++||+-... .+.++. +...++.++|+|||+.|++++-||.|.+||...+..+..+.+
T Consensus 492 ~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~ 570 (893)
T KOG0291|consen 492 LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKE 570 (893)
T ss_pred eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccc
Confidence 99999999999999986553 444554 778899999999999999999999999999988776655432
Q ss_pred ----------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHH
Q 005254 619 ----------HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 619 ----------~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
.....+.+++|+||.++++||....|++|++.++...+
T Consensus 571 ~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 571 TDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred cceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 23468899999999999999999999999999886544
No 3
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-63 Score=458.58 Aligned_cols=602 Identities=23% Similarity=0.392 Sum_probs=480.2
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeec--CCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEE
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIE--GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIG 107 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~--~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 107 (706)
.|++++......|.+||+++++....+. .-...|+|++-+|+..+||+|..||.|+||+..+.....++.+|+..|++
T Consensus 33 ~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~ 112 (888)
T KOG0306|consen 33 KGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTT 112 (888)
T ss_pred CCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEE
Confidence 4999999888899999999996554432 33468999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecc
Q 005254 108 MACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH 187 (706)
Q Consensus 108 ~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 187 (706)
+.|+..|.+||+|+.|+.|.+||+-...-..++++|...|+.+-|..+.+ ++++.+.|+.|++||+++..+..+.-.|
T Consensus 113 l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~ 190 (888)
T KOG0306|consen 113 LKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDH 190 (888)
T ss_pred EEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecc
Confidence 99999999999999999999999988888899999999999999987544 5999999999999999999999999999
Q ss_pred cceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEE
Q 005254 188 FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 267 (706)
Q Consensus 188 ~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (706)
.+.++++++.+ +.+++++.|+.+.+|++........ ....+.+...|. +......+.+.......+..+
T Consensus 191 r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~-----~~~~~s~~~~G~----~~rqsk~R~i~l~~d~s~r~~ 259 (888)
T KOG0306|consen 191 RGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKE-----TNRYISTKLRGT----FIRQSKGREINLVTDFSDRFL 259 (888)
T ss_pred cceEEEEEEec--ceEEEEecCCceEEEEeeccccccc-----ccccceeeccce----eeeccCCceeEEeecCcccEE
Confidence 99999999987 6899999999999999832111000 000000100010 011111112222333344577
Q ss_pred EEecCCCeEEEEECCCCeEEeeccC-----------------cc-------ccccccCCCccceeEEEEccCCCe--eEE
Q 005254 268 ITVGERGIVRMWNADSACLYEQKSS-----------------DV-------TISFEMDDSKRGFTAATVLPSNQG--LLC 321 (706)
Q Consensus 268 ~~~~~~~~i~~~~~~~~~~~~~~~~-----------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~--l~~ 321 (706)
++-+.|..+.++.+........... .. ...+..-.....+.+..+.|.+.. .++
T Consensus 260 ~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv 339 (888)
T KOG0306|consen 260 VCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLV 339 (888)
T ss_pred EEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEE
Confidence 8888888888888766511100000 00 001111122344566666665543 355
Q ss_pred EeeCCceEEEEeeeccc--cceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceE
Q 005254 322 VTADQQLLLYTTVEVPE--KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399 (706)
Q Consensus 322 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i 399 (706)
...++.+.+|.+..... +...........+|...|.+++++. ++.++.....+.+.+|+..+.+++..+... .+
T Consensus 340 ~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~--d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~ 415 (888)
T KOG0306|consen 340 LLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS--DSILLASGAGESIKIWNRDTLKCIRTITCG--YI 415 (888)
T ss_pred EeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec--CceeeeecCCCcEEEEEccCcceeEEeccc--cE
Confidence 58888888888876222 2223344456779999999999985 344555555689999999999999988765 44
Q ss_pred EEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC
Q 005254 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE 479 (706)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~ 479 (706)
.+. +|.|.++. +++|...|.+.+||+.+...+...++|.+.+.+++.+|++. .+++|+.|.+|++|++.-....+.
T Consensus 416 l~~--~Fvpgd~~-Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 416 LAS--KFVPGDRY-IVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred EEE--EecCCCce-EEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCc
Confidence 444 37777776 99999999999999999999999999999999999999988 799999999999999864332111
Q ss_pred cc---cccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC
Q 005254 480 QP---MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG 556 (706)
Q Consensus 480 ~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 556 (706)
.. ...... ........|.|+.+||||++|+++--|.++++|-+.+.+....+.+|.-||.++..|||++.++||+.
T Consensus 492 t~~k~lsl~~~-rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSA 570 (888)
T KOG0306|consen 492 TQKKVLSLKHT-RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSA 570 (888)
T ss_pred ccceeeeeccc-eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccC
Confidence 10 111111 22335677999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEE
Q 005254 557 DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 636 (706)
Q Consensus 557 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 636 (706)
|.+|++|-++-|.|.+.+-+|...|.++.|.|....+++++.|+.|+-||-..-+.++.+.+|...|++++.+|+|.+++
T Consensus 571 DKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vv 650 (888)
T KOG0306|consen 571 DKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVV 650 (888)
T ss_pred CCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCchh
Q 005254 637 TGGSDALVNLWHDSTAA 653 (706)
Q Consensus 637 ~~~~dg~i~vw~~~~~~ 653 (706)
+++.|.+|++|.-..+.
T Consensus 651 s~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 651 SSSHDKSIRLWERTDEI 667 (888)
T ss_pred eccCCceeEeeeccCcc
Confidence 99999999999987743
No 4
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-60 Score=420.64 Aligned_cols=588 Identities=17% Similarity=0.227 Sum_probs=479.0
Q ss_pred CCCcccccceeeceeeeeeeeccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec
Q 005254 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH 80 (706)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~ 80 (706)
|-.++|++.|+..|..++-.+. -+.-.|-|+.++++.+..+.+.++.+......+.+|..+++-..|||.|.|+|+|..
T Consensus 1 ms~~~lk~~~~~lPst~Rg~~~-~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~ 79 (603)
T KOG0318|consen 1 MSEYELKETFASLPSTERGVPI-IIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDV 79 (603)
T ss_pred CchhhhhhhccCCCcccCCcce-EeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCC
Confidence 7788999999999988884441 244558899999999999999999999988999999999999999999999999999
Q ss_pred cCeEEEEECCCCe--EEEEeeccCCCeEEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCC
Q 005254 81 SREIRVWDLSTLK--CLRSWKGHDGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDT 156 (706)
Q Consensus 81 d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 156 (706)
.|+|+|||....+ +..+++.-.++|..++|++|+++|++.++ ++..+++-+++|..+..+.+|...|.++.|-|.
T Consensus 80 sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps- 158 (603)
T KOG0318|consen 80 SGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS- 158 (603)
T ss_pred cCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC-
Confidence 9999999986633 34467778899999999999999998764 334555555678888999999999999999986
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec----Cccee
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP----TYEMV 232 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~----~~~~~ 232 (706)
+...+++|++|++|.+|+-...+...+++.|..-|.++.|+|||.++++++.||.+.+||-.+++.+..+. +...+
T Consensus 159 RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsI 238 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSI 238 (603)
T ss_pred CceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccE
Confidence 45579999999999999988888888899999999999999999999999999999999999999988886 45578
Q ss_pred eeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEE
Q 005254 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV 312 (706)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (706)
.++.++|++. ++++.+.|.++++||..+..+.......... ......+.+
T Consensus 239 falsWsPDs~-----------------------~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v-------~dqqvG~lW 288 (603)
T KOG0318|consen 239 FALSWSPDST-----------------------QFLTVSADKTIKIWDVSTNSLVSTWPMGSTV-------EDQQVGCLW 288 (603)
T ss_pred EEEEECCCCc-----------------------eEEEecCCceEEEEEeeccceEEEeecCCch-------hceEEEEEE
Confidence 9999999987 8999999999999999998665554333221 112223333
Q ss_pred ccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee
Q 005254 313 LPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL 392 (706)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~ 392 (706)
. ++.|+..+.+|.+.+++..... ......+|+..|.++..++ ++.++.+++.||.|.-|+..++..-...
T Consensus 289 q--kd~lItVSl~G~in~ln~~d~~-------~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~ 358 (603)
T KOG0318|consen 289 Q--KDHLITVSLSGTINYLNPSDPS-------VLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLA 358 (603)
T ss_pred e--CCeEEEEEcCcEEEEecccCCC-------hhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccc
Confidence 3 7889999999999999887543 4567889999999999988 4599999999999999999998876554
Q ss_pred -eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE-eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 393 -AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 393 -~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
.+|...|.+++ ... ... +++.+.|.++++.++.....-... -.......+++..+++. +++....++.+.+-+
T Consensus 359 g~~h~nqI~~~~--~~~-~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~-~avv~~~~~iv~l~~ 433 (603)
T KOG0318|consen 359 GKGHTNQIKGMA--ASE-SGE-LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGG-TAVVACISDIVLLQD 433 (603)
T ss_pred cccccceEEEEe--ecC-CCc-EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCC-EEEEEecCcEEEEec
Confidence 78999999986 333 233 889999999999988654322221 11223344888888876 455555444444333
Q ss_pred ecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE--EEEEeecCCcEEEEEEccCC
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVD 548 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~s~~~ 548 (706)
.... ..........+++++|++..+++|+.|+.|++|.+..... ...+..|..+|+++++|||+
T Consensus 434 ~~~~--------------~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~ 499 (603)
T KOG0318|consen 434 QTKV--------------SSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG 499 (603)
T ss_pred CCcc--------------eeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC
Confidence 3321 1112344578999999999999999999999999987543 33566799999999999999
Q ss_pred CEEEEecCCCcEEEEEcCCCceEE-EEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE-EEEeccCCCcEEEE
Q 005254 549 QVVITASGDKTIKIWSISDGSCLK-TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC-IATYDKHEDKIWAL 626 (706)
Q Consensus 549 ~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~ 626 (706)
.+||++...+.+.+||+.+.+... .+.-|...|.+++|+|+..++|+|+-|..|.||++..... +.....|...|+.+
T Consensus 500 ~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v 579 (603)
T KOG0318|consen 500 AYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSV 579 (603)
T ss_pred cEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeE
Confidence 999999999999999999887743 3445999999999999999999999999999999987644 44445899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECC
Q 005254 627 AVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 627 ~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.|- |...|++.+.|..|++|++.
T Consensus 580 ~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 580 AWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEe-cCceEEeccCcceeEEeccc
Confidence 996 56689999999999999875
No 5
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-61 Score=443.78 Aligned_cols=528 Identities=24% Similarity=0.417 Sum_probs=450.8
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecC-CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeecc
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEG-GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~-~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 101 (706)
+++++||+++|+++..+ -+++|++++++.++.++. |++||.-++|+|.+.+||+|+.|+.+++||+..+.+.+.|++|
T Consensus 67 a~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~ 146 (775)
T KOG0319|consen 67 ALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGH 146 (775)
T ss_pred eeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCC
Confidence 89999999999999988 799999999999999988 9999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCC--EEEEecCCCcEEEEECCCCeE-EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 102 DGPAIGMACHPSGG--LLATAGADRKVLVWDVDGGFC-THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 102 ~~~v~~~~~s~~~~--~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
.+.|.++.|.|+-. .|++|..|+++++||+.+... ++.+..|.+.|++++|++|+.. +++++.|..+.+||+.+.
T Consensus 147 gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~--~ls~~RDkvi~vwd~~~~ 224 (775)
T KOG0319|consen 147 GGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE--LLSVGRDKVIIVWDLVQY 224 (775)
T ss_pred CceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce--EEEeccCcEEEEeehhhh
Confidence 99999999999765 489999999999999986654 7788899999999999999877 999999999999999888
Q ss_pred eeEEEeecccceEEEEEEecC-----CCEEEEEeCCCEEEEEeCCCCcceeeecCcc--eeeeEEeeCCCCCcccccccc
Q 005254 179 KCVATLDKHFSRVTSMAITSD-----GSTLISAGRDKVVNLWDLRDYSCKLTVPTYE--MVEAVCAIPPGSAFDSFLSSY 251 (706)
Q Consensus 179 ~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 251 (706)
+....++. ...+.++.+.++ |.+++++|.+|.+++||.+++++........ .+......+.
T Consensus 225 ~~l~~lp~-ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~----------- 292 (775)
T KOG0319|consen 225 KKLKTLPL-YESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIES----------- 292 (775)
T ss_pred hhhheech-hhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccc-----------
Confidence 87777653 356777777776 6799999999999999999988765543322 1222222221
Q ss_pred cchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEE-EccCCCeeEEEeeCCceEE
Q 005254 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAAT-VLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 330 (706)
...++....+..+.++|.++..+... +-...+.+..+. +.|+.+.++++++.+.+++
T Consensus 293 ------------~~~~l~vtaeQnl~l~d~~~l~i~k~----------ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 293 ------------MSQLLLVTAEQNLFLYDEDELTIVKQ----------IVGYNDEILDMKFLGPEESHLAVATNSPELRL 350 (775)
T ss_pred ------------cCceEEEEccceEEEEEccccEEehh----------hcCCchhheeeeecCCccceEEEEeCCCceEE
Confidence 22677888888999998877644332 223334455555 4577889999999999999
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc----eeeEeeeCCcceEEEeeeee
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM----SCSYVLAGHSEIVLCLDTCA 406 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~i~~~~~~~ 406 (706)
|+...... ..+.+|.+.+.++... ..+.++++++.|..+++|.++.. .+.....+|...+.+++ .
T Consensus 351 y~~~~~~c--------~ii~GH~e~vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava--~ 419 (775)
T KOG0319|consen 351 YTLPTSYC--------QIIPGHTEAVLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVA--G 419 (775)
T ss_pred EecCCCce--------EEEeCchhheeeeeec-ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceee--e
Confidence 96655432 2778999999999943 35689999999999999987543 34556779999999998 5
Q ss_pred ecCCCEEEEEeeCCCcEEEEeCCCceEE-----E----EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCC
Q 005254 407 LSSGKILIVTGSKDNSVRLWDSESRCCV-----G----VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477 (706)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~----~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 477 (706)
+..+..+|++++.|+++++|++...+.. . ....|...|++++++|+.+ ++++|+.|.+.++|+++...
T Consensus 420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~-- 496 (775)
T KOG0319|consen 420 SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLR-- 496 (775)
T ss_pred cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccCce--
Confidence 6777778999999999999998762211 1 2347999999999999977 99999999999999998543
Q ss_pred CCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCC
Q 005254 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557 (706)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 557 (706)
....+.+|...+.++.|+|..+.+++++.|++|+||.+.++.+++++.+|...|....|-.+++.|++++.|
T Consensus 497 --------l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 497 --------LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred --------EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC
Confidence 778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 558 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
|-|++|++++++|+.++..|...|.+++-++.+.++++|+.||.|.+|.-.+
T Consensus 569 GliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999999999999999999999999999999999999999999996544
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-56 Score=410.64 Aligned_cols=594 Identities=19% Similarity=0.299 Sum_probs=472.4
Q ss_pred cccceeeceeeeeeeeccceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeE
Q 005254 6 LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREI 84 (706)
Q Consensus 6 l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i 84 (706)
|+++-.-.-++..-|+..++++||+|.++++.... ...+.++.....++.+. ...+|.|+.|||||+++|++..+ .+
T Consensus 42 LknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~gn-~l 119 (893)
T KOG0291|consen 42 LKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCGN-LL 119 (893)
T ss_pred ccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCCcEEEEEecc-ee
Confidence 44433334455666777789999999998888766 67777777777777765 46789999999999999987644 89
Q ss_pred EEEECCC--------CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeE--EEEeeCCCCcEEEEEEcC
Q 005254 85 RVWDLST--------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC--THYFKGHKGVVSSILFHP 154 (706)
Q Consensus 85 ~iwd~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~ 154 (706)
.||-... ..+.+++.+|-..|.++.|+.|.++|++|+.|.++++|.++..+. ...+.+|...|.+.-|..
T Consensus 120 qiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~ 199 (893)
T KOG0291|consen 120 QIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA 199 (893)
T ss_pred EEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc
Confidence 9998643 245667888999999999999999999999999999999987665 567789999999999999
Q ss_pred CCCceEEEEEecCCeEEEEECCC-----------------------Cee-----E------EEeecccceEEEEEEecCC
Q 005254 155 DTDKSLLFSGSDDATVRVWDLLA-----------------------KKC-----V------ATLDKHFSRVTSMAITSDG 200 (706)
Q Consensus 155 ~~~~~~l~~~~~dg~i~vwd~~~-----------------------~~~-----~------~~~~~~~~~v~~~~~~~~~ 200 (706)
+... +++.+.||.+.+|.... ++. . .-+......+++.+|++..
T Consensus 200 ~~~~--l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t 277 (893)
T KOG0291|consen 200 NSLD--LYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT 277 (893)
T ss_pred Ccce--EEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc
Confidence 8776 99999999999997651 111 0 1112233689999999999
Q ss_pred CEEEEEeCCCEEEEEeCCCCcceeeecCc-ceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecC-CCeEEE
Q 005254 201 STLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE-RGIVRM 278 (706)
Q Consensus 201 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ 278 (706)
..|+++-..|...+|.+.+...+..+... .++..+.+...|. .++.++. -|.+-+
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD-----------------------WiA~g~~klgQLlV 334 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD-----------------------WIAFGCSKLGQLLV 334 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC-----------------------EEEEcCCccceEEE
Confidence 99999999999999999998888777654 3444444444443 2222222 245555
Q ss_pred EECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeE
Q 005254 279 WNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 358 (706)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 358 (706)
|+..+. .......+|...+.+
T Consensus 335 weWqsE-----------------------------------------------------------sYVlKQQgH~~~i~~ 355 (893)
T KOG0291|consen 335 WEWQSE-----------------------------------------------------------SYVLKQQGHSDRITS 355 (893)
T ss_pred EEeecc-----------------------------------------------------------ceeeeccccccceee
Confidence 544432 122345678888999
Q ss_pred eeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe
Q 005254 359 LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT 438 (706)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 438 (706)
++|+| +++++++|+.||.|++||..++-+..++..|+..++.+. +...++. +++.+-||+|+.||+...+..+++.
T Consensus 356 l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~--f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft 431 (893)
T KOG0291|consen 356 LAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQ--FTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFT 431 (893)
T ss_pred EEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEE--EEecCCE-EEEeecCCeEEeeeecccceeeeec
Confidence 99987 889999999999999999999999999999999999998 7777777 9999999999999999999888877
Q ss_pred CC-CcCeEEEEEecCCCeEEEEecCCC-eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC
Q 005254 439 GH-MGAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 516 (706)
Q Consensus 439 ~~-~~~v~~~~~~~~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 516 (706)
.. .-...+++..|.|. ++++|+.|. .|.+|+++++. ....+.+|+++|.+++|+|++..|++++.|.
T Consensus 432 ~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGq----------llDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 432 SPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQ----------LLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred CCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCe----------eeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 54 44677889999987 777777764 69999999875 7888999999999999999999999999999
Q ss_pred cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee--------------------
Q 005254 517 TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-------------------- 576 (706)
Q Consensus 517 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------- 576 (706)
+|++||+-.......--.+...+..++|+|+|+.|+++.-||+|.+||.+.+.....+.+
T Consensus 501 TVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 501 TVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred eEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 999999866543333334778899999999999999999999999999987665543332
Q ss_pred cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc--------------------------------------
Q 005254 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-------------------------------------- 618 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------------------- 618 (706)
.....+.+++|+||.++++|+....|.+|++.++-.++.++-
T Consensus 581 ~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i 660 (893)
T KOG0291|consen 581 KGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRI 660 (893)
T ss_pred cCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccc
Confidence 235689999999999999999999999999987655544320
Q ss_pred ---------------C---CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHHHHHHHHHHHhcchhhhhhhccc
Q 005254 619 ---------------H---EDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDAD 680 (706)
Q Consensus 619 ---------------~---~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (706)
+ .=.|.++.|+|.|+.++.++..| +.||.+.+...--.. .-+...+++....++.+.+
T Consensus 661 ~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~~~~FDPf---~LD~~vTPe~v~~al~~qe 736 (893)
T KOG0291|consen 661 DIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDTTILFDPF---DLDVDVTPESVREALREQE 736 (893)
T ss_pred cccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccc-eEEEecCCceEEccc---ccccccCHHHHHHHHhcch
Confidence 0 11378899999999999999998 788998765443222 2233456666778888889
Q ss_pred hhHhhheeeecCCcchHHHHHHhh
Q 005254 681 YTKAIQVAFELRRPHKLFELFASV 704 (706)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~ 704 (706)
+.++...++++|+++-+.+.+|.+
T Consensus 737 y~~AlvmslRLNe~~lI~evlesv 760 (893)
T KOG0291|consen 737 YLKALVMSLRLNEYKLIKEVLESV 760 (893)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhC
Confidence 999999999999999888888765
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-58 Score=392.10 Aligned_cols=336 Identities=29% Similarity=0.508 Sum_probs=306.6
Q ss_pred eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
++-..+.+|.++|.|++|+|+|++||+|+.|.++++||+.+..+.++.++|...|.|++|+|||+. +++|+.||+|++
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~--iASG~~dg~I~l 183 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKK--IASGSKDGSIRL 183 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcch--hhccccCCeEEE
Confidence 445568899999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred EECCCCeeE-EEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccc
Q 005254 173 WDLLAKKCV-ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY 251 (706)
Q Consensus 173 wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (706)
||..+|+++ ..+++|...|++++|.|-.
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~h--------------------------------------------------- 212 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLH--------------------------------------------------- 212 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccc---------------------------------------------------
Confidence 999988765 5789999999999997631
Q ss_pred cchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEE
Q 005254 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (706)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (706)
T Consensus 213 -------------------------------------------------------------------------------- 212 (480)
T KOG0271|consen 213 -------------------------------------------------------------------------------- 212 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCC
Q 005254 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK 411 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 411 (706)
..|+.+
T Consensus 213 --------------------------------------------------------------------------l~p~~r 218 (480)
T KOG0271|consen 213 --------------------------------------------------------------------------LVPPCR 218 (480)
T ss_pred --------------------------------------------------------------------------cCCCcc
Confidence 112223
Q ss_pred EEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe
Q 005254 412 ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (706)
. +++++.||.++|||+..+.++..+.+|..+|+|+.|-.+| ++++++.|++|++|+...+. ....+.
T Consensus 219 ~-las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~----------~~r~lk 285 (480)
T KOG0271|consen 219 R-LASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGK----------LCRELK 285 (480)
T ss_pred c-eecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchh----------HHHhhc
Confidence 2 8888999999999999999999999999999999998775 89999999999999987654 667788
Q ss_pred ecCcceEEEEEcC-----------C-------------------------CCEEEEeeCCCcEEEEeCCCc-cEEEEEee
Q 005254 492 AHGKDINSLAVAP-----------N-------------------------DSLVCTGSQDRTACVWRLPDL-VSVVTFRG 534 (706)
Q Consensus 492 ~~~~~i~~~~~s~-----------~-------------------------~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 534 (706)
+|...|+.++.+. . +..|++|+.|.++.+|+.... +++..+.+
T Consensus 286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg 365 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG 365 (480)
T ss_pred ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence 8999999998872 2 235999999999999997644 57888999
Q ss_pred cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE
Q 005254 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614 (706)
Q Consensus 535 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 614 (706)
|...|..+.||||++++|+++-|..|++||.++|+.+.+|++|-.+|..++|+.|.++|++|+.|.++++||+++.+...
T Consensus 366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 615 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 615 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
.+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 446 DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 446 DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999995
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-58 Score=388.43 Aligned_cols=368 Identities=26% Similarity=0.442 Sum_probs=306.8
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
-..+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..++.+.++|...|.|++|+|||+.||+|+.||+|++||.+
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEE-EEeeCCCCcEEEEEEcCC---CCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC
Q 005254 133 GGFCT-HYFKGHKGVVSSILFHPD---TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 133 ~~~~~-~~~~~~~~~v~~~~~~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 208 (706)
+|+++ ..+.+|...|++++|.|- ....++++++.||.|+|||+..++++..+.+|..+|+|+.|-.+| ++++++.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~ 266 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQ 266 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCC
Confidence 98765 568899999999999762 223359999999999999999999999999999999999998665 8999999
Q ss_pred CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 209 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
|++|++|+...+.+
T Consensus 267 DrtIkvw~a~dG~~------------------------------------------------------------------ 280 (480)
T KOG0271|consen 267 DRTIKVWRALDGKL------------------------------------------------------------------ 280 (480)
T ss_pred CceEEEEEccchhH------------------------------------------------------------------
Confidence 99999998754432
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcE
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 368 (706)
T Consensus 281 -------------------------------------------------------------------------------- 280 (480)
T KOG0271|consen 281 -------------------------------------------------------------------------------- 280 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEE
Q 005254 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 448 (706)
...+.+|...|+.++ .+. .+.|-+|..|.+=+-....+ ..+. . ..... -+
T Consensus 281 --------------------~r~lkGHahwvN~la--lsT--dy~LRtgaf~~t~~~~~~~s--e~~~-~-Al~rY--~~ 330 (480)
T KOG0271|consen 281 --------------------CRELKGHAHWVNHLA--LST--DYVLRTGAFDHTGRKPKSFS--EEQK-K-ALERY--EA 330 (480)
T ss_pred --------------------HHhhcccchheeeee--ccc--hhhhhccccccccccCCChH--HHHH-H-HHHHH--HH
Confidence 225667777777775 222 22244444332211111000 0000 0 00000 01
Q ss_pred EecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 528 (706)
..+++...|++|+.|.++.+|+-...+ ++.....+|..-|+.+.||||++++|+++.|..|++||-.+|+.
T Consensus 331 ~~~~~~erlVSgsDd~tlflW~p~~~k---------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 331 VLKDSGERLVSGSDDFTLFLWNPFKSK---------KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred hhccCcceeEEecCCceEEEecccccc---------cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 122333589999999999999865432 25566788999999999999999999999999999999999999
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEE
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 606 (706)
+..|++|-.+|..++|+.|.++|++|+.|.++++||+++.++...+.+|..+|.++.|+|||..+++|+.|..+++|.
T Consensus 402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 402 LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999995
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-51 Score=365.65 Aligned_cols=529 Identities=20% Similarity=0.255 Sum_probs=418.6
Q ss_pred eeeeecc-----ceEEcCCCCEEEEeeCC-eEEEEEccCCe--EEEeecCCCccEEEEEEccCCCEEEEEec--cCeEEE
Q 005254 17 QQFYGGG-----PLVVSSDGSFIACACGE-SINIVDLSNAS--IKSTIEGGSDTITALALSPDDKLLFSSGH--SREIRV 86 (706)
Q Consensus 17 ~~~~~~~-----~~~~s~dg~~l~~~~~~-~i~i~d~~~~~--~~~~l~~~~~~i~~l~~s~~~~~l~s~~~--d~~i~i 86 (706)
..+|+.+ -.-+||.|-|+|.|... .|+|||....+ +..+++.-.++|..|+|++|+++|++.++ +...++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 3445554 34599999999988765 89999976533 23566667889999999999999987754 334444
Q ss_pred EECCCCeEEEEeeccCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe
Q 005254 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 87 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 165 (706)
+-+.+|.-+..+.+|...|++++|-|... ++++|++|++|.+|+=.--+...+++.|..-|.++.|+|||.. +++.+
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~--Fat~g 209 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSR--FATAG 209 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCe--EEEec
Confidence 55558888999999999999999999776 6899999999999997777777788889999999999999887 99999
Q ss_pred cCCeEEEEECCCCeeEEEee---cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCccee----eeEEee
Q 005254 166 DDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV----EAVCAI 238 (706)
Q Consensus 166 ~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~----~~~~~~ 238 (706)
.||.|.+||-.+++.+..+. +|.+.|.+++|+||++.+++++.|.++++||+.+.+++++++....+ ..+.+.
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq 289 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ 289 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe
Confidence 99999999999999999997 89999999999999999999999999999999999999888765542 222232
Q ss_pred CCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCe
Q 005254 239 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQG 318 (706)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (706)
+.++++.+.+|+|.+++..... .......+...++++..++++..
T Consensus 290 -------------------------kd~lItVSl~G~in~ln~~d~~----------~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 290 -------------------------KDHLITVSLSGTINYLNPSDPS----------VLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred -------------------------CCeEEEEEcCcEEEEecccCCC----------hhheecccccceeEEEEcCCCCE
Confidence 2379999999999999987763 23345678889999999999999
Q ss_pred eEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEe--eeCCc
Q 005254 319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV--LAGHS 396 (706)
Q Consensus 319 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~--~~~~~ 396 (706)
++.++.||.+.-|+......... .-.+|...|..++.. +...+.+.+.|..+++.++........ .+-..
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~------~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~ 406 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRL------AGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS 406 (603)
T ss_pred EEeeccCceEEEEecCCcccccc------ccccccceEEEEeec--CCCcEEEEecCCeEEEEecccCcccccceeecCC
Confidence 99999999999999886543211 124577778777764 335678888889999998865433222 12222
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCC
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 476 (706)
.+. +++ ..+++.. ++..+.++.+.+-|...-. .. .-.-...+++++|++. .++.|+.|+.|++|.+....
T Consensus 407 QP~-~la--v~~d~~~-avv~~~~~iv~l~~~~~~~---~~-~~~y~~s~vAv~~~~~-~vaVGG~Dgkvhvysl~g~~- 476 (603)
T KOG0318|consen 407 QPK-GLA--VLSDGGT-AVVACISDIVLLQDQTKVS---SI-PIGYESSAVAVSPDGS-EVAVGGQDGKVHVYSLSGDE- 476 (603)
T ss_pred Cce-eEE--EcCCCCE-EEEEecCcEEEEecCCcce---ee-ccccccceEEEcCCCC-EEEEecccceEEEEEecCCc-
Confidence 222 444 5566655 4444444433333332211 11 1345677899999987 89999999999999998753
Q ss_pred CCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe-ecCCcEEEEEEccCCCEEEEec
Q 005254 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQVVITAS 555 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~ 555 (706)
.........|..+|+++++|||+.+||++...+.+.+||..+.+.....- -|...|.+++|+|+..++|+|+
T Consensus 477 -------l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGS 549 (603)
T KOG0318|consen 477 -------LKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGS 549 (603)
T ss_pred -------ccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecc
Confidence 22445677899999999999999999999999999999999887744433 3999999999999999999999
Q ss_pred CCCcEEEEEcCCCce-EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 556 GDKTIKIWSISDGSC-LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 556 ~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
-|-.|.||+++.... +.....|...|+.+.|..+ ..|++.+.|..|++|++.
T Consensus 550 lDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 550 LDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcceeEEeccc
Confidence 999999999987644 4445568888999999754 689999999999999863
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-52 Score=386.65 Aligned_cols=557 Identities=22% Similarity=0.319 Sum_probs=435.9
Q ss_pred ccceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 22 GGPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
.+++.-+||.-+||+|..+ .|+||+..+......+.||..+|+++.|+..|..||+|+.|+.|.+||+-...-+..+++
T Consensus 68 vt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~G 147 (888)
T KOG0306|consen 68 VTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRG 147 (888)
T ss_pred EEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeec
Confidence 3467788999999999887 899999999999999999999999999999999999999999999999998888999999
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC---
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA--- 177 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--- 177 (706)
|+..|+.+-|..+.++|++.+.|+.|++||+++..+..+.-.|.+.++.+++.+ +. +++++.|+.+++|++..
T Consensus 148 Hkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~--lvt~~~dse~~v~~L~~~~D 223 (888)
T KOG0306|consen 148 HKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KL--LVTAGTDSELKVWELAFEDD 223 (888)
T ss_pred chHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ce--EEEEecCCceEEEEeecccc
Confidence 999999999999899999999999999999999999999999999999999987 33 89999999999999821
Q ss_pred ----Ce-----eEEEe-ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCc----ceeeeEEeeCCCCC
Q 005254 178 ----KK-----CVATL-DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY----EMVEAVCAIPPGSA 243 (706)
Q Consensus 178 ----~~-----~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 243 (706)
.. ...++ +...+....+...++++++++-+.|..+.++.+.+.+.+...... ..-.+. ...+...
T Consensus 224 ~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~-t~e~~~~ 302 (888)
T KOG0306|consen 224 EKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAE-TEENEDD 302 (888)
T ss_pred cccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcc-ccccccc
Confidence 01 11111 223344556667788889999999999999998765433221111 000000 0000000
Q ss_pred ccccccc-cc-chhhhccc----------cccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEE
Q 005254 244 FDSFLSS-YN-QQTIKKKR----------RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAAT 311 (706)
Q Consensus 244 ~~~~~~~-~~-~~~~~~~~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (706)
....... .. ...+.... ......++. -.++++.++.++.. .-...............+...+.+++
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s-~~~~p~~~~~~~i~~~GHR~dVRsl~ 380 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENS-GKTSPEADRTSNIEIGGHRSDVRSLC 380 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccC-CCCCccccccceeeeccchhheeEEE
Confidence 0000000 00 00000000 001112222 55666666666551 11113333344567778888999998
Q ss_pred EccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEe
Q 005254 312 VLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV 391 (706)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~ 391 (706)
++.+.. ++....++.+.+|+...... .+.+ ..+.+.+..|.| .+.++++|...|.+.+||+.+......
T Consensus 381 vS~d~~-~~~Sga~~SikiWn~~t~kc-------iRTi--~~~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Et 449 (888)
T KOG0306|consen 381 VSSDSI-LLASGAGESIKIWNRDTLKC-------IRTI--TCGYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVET 449 (888)
T ss_pred eecCce-eeeecCCCcEEEEEccCcce-------eEEe--ccccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhh
Confidence 887655 44555678899998875421 1111 123667777876 788999999999999999999999999
Q ss_pred eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC-----ceEEEEE-------eCCCcCeEEEEEecCCCeEEEE
Q 005254 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-----RCCVGVG-------TGHMGAVGAVAFSKKLQNFLVS 459 (706)
Q Consensus 392 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~ 459 (706)
.+.|.+.+..++ ..|++.. +++|+.|.+|++||..- +...+.+ -.-...|.++.+|||++ +|++
T Consensus 450 i~AHdgaIWsi~--~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaV 525 (888)
T KOG0306|consen 450 IRAHDGAIWSIS--LSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAV 525 (888)
T ss_pred hhccccceeeee--ecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEE
Confidence 999999999999 8888888 99999999999998642 1111111 12457899999999998 9999
Q ss_pred ecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcE
Q 005254 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI 539 (706)
Q Consensus 460 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 539 (706)
+--|.++++|-+++.+ ....+.+|.-||.|+.+|||++++++|+.|.+|++|-+.-|.+.+.+-+|.+.|
T Consensus 526 sLLdnTVkVyflDtlK----------FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSv 595 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLK----------FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSV 595 (888)
T ss_pred EeccCeEEEEEeccee----------eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCce
Confidence 9999999999998654 777889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC
Q 005254 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG 610 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 610 (706)
.++.|.|....+.+++.|+.|+-||-...++++.+.+|...|++++.+|+|.++++++.|.+|++|.-...
T Consensus 596 m~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 596 MSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred eEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999986543
No 11
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-52 Score=383.90 Aligned_cols=603 Identities=15% Similarity=0.214 Sum_probs=446.2
Q ss_pred eccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe--ccCeEEEEECCCCeEEEEe
Q 005254 21 GGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG--HSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 21 ~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~ 98 (706)
++..++.+|-..++|+..+..+.+||++...+-+.+..|..+++|+|||++|+|+|+|- ....+++|+++....+.+|
T Consensus 39 ~~~gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEf 118 (1080)
T KOG1408|consen 39 NANGLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEF 118 (1080)
T ss_pred cCCcccccccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhh
Confidence 34579999999999999999999999999988888889999999999999999999984 6788999999999999999
Q ss_pred eccCCCeEEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC
Q 005254 99 KGHDGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176 (706)
Q Consensus 99 ~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 176 (706)
..|+..|+|++|+|.++|+++.+. |-.|.+||+........- .-...|..++|+.++.+ +++.+ +..|++|.++
T Consensus 119 vdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~fsEdgSY--fvT~g-nrHvk~wyl~ 194 (1080)
T KOG1408|consen 119 VDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAFSEDGSY--FVTSG-NRHVKLWYLQ 194 (1080)
T ss_pred hhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEEccCCce--eeeee-eeeEEEEEee
Confidence 999999999999999999998775 456789998765444332 25678999999999885 66655 4669999998
Q ss_pred CCeeEEE---eecccceEEEEEE------------ecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCC
Q 005254 177 AKKCVAT---LDKHFSRVTSMAI------------TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPG 241 (706)
Q Consensus 177 ~~~~~~~---~~~~~~~v~~~~~------------~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (706)
.++.... +.+...-.-.+.+ ..+..+. .+..|.+.-|.-+..-.....-......+++.+
T Consensus 195 ~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfa--it~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--- 269 (1080)
T KOG1408|consen 195 IQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFA--ITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--- 269 (1080)
T ss_pred ccccccCCccccchhhhccccccchhhhhhhcCcccccceEE--Eecccceeeechhhhhhhhhhhhccccceeeee---
Confidence 7763221 1111111111111 1111111 223454444432211111000001112222222
Q ss_pred CCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcccc--------------ccccCCCccce
Q 005254 242 SAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI--------------SFEMDDSKRGF 307 (706)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 307 (706)
...+++++.+|.|++++..+-............ .......-...
T Consensus 270 ----------------------~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~ 327 (1080)
T KOG1408|consen 270 ----------------------SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDA 327 (1080)
T ss_pred ----------------------cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCce
Confidence 237899999999999998876433222211111 11111122345
Q ss_pred eEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC----------CCcEEEEEecCCc
Q 005254 308 TAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE----------EEQYLAVATNIEQ 377 (706)
Q Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~~l~~~~~~~~ 377 (706)
..+.|.+..+.+.++..|..+++|++.+..... ....+..|...|+++.-.|- ...-+++++.|++
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvg----k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~T 403 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVG----KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGT 403 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEecccccccc----ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCc
Confidence 677889999999999999999999998765332 22344556666666655441 1345899999999
Q ss_pred EEEEeCCCceeeEe-------------------------------------eeCCcceEEEeeeeeecCCCEEEEEeeCC
Q 005254 378 VQVYDLSSMSCSYV-------------------------------------LAGHSEIVLCLDTCALSSGKILIVTGSKD 420 (706)
Q Consensus 378 i~~~d~~~~~~~~~-------------------------------------~~~~~~~i~~~~~~~~~~~~~~l~~~~~d 420 (706)
|++|++.....-.. .......+.++. .+|++++ |++|..-
T Consensus 404 IRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~--vSp~gqh-LAsGDr~ 480 (1080)
T KOG1408|consen 404 IRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALA--VSPDGQH-LASGDRG 480 (1080)
T ss_pred EEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEE--ECCCcce-ecccCcc
Confidence 99999875211000 001233466776 8899998 9999999
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecC--CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK--LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
|.+++|++..-+....+..|...|.++.|+.. +..+|++++.|.-|.+||.... ......+.+|...|+
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn---------y~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN---------YDLVQTLDGHSSSIT 551 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc---------cchhhhhccccccee
Confidence 99999999999999999999999999999853 2348999999999999998753 336677889999999
Q ss_pred EEEEcCCC--CEEEEeeCCCcEEEEeCCCccEEEEEee-----cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceE
Q 005254 499 SLAVAPND--SLVCTGSQDRTACVWRLPDLVSVVTFRG-----HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL 571 (706)
Q Consensus 499 ~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 571 (706)
++.|.-+| ..+++++.|+.|.+--......-..+.. ....+..++..|..+++++++.|..|+|||+++++..
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 99999877 7788888898776433322111222222 2346889999999999999999999999999999999
Q ss_pred EEEee---cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 572 KTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 572 ~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+.|++ |.+....+...|.|-||++.+.|.++.++|..+|+++.+..+|...|+.+.|++|.+.|++.+.||+|+||+
T Consensus 632 k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 99986 556788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhcc
Q 005254 649 DSTAAEREEAFRKEEEAVLRGQ 670 (706)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~ 670 (706)
+...+......+.....+.+.+
T Consensus 712 lp~~mii~m~~r~~~lr~rq~~ 733 (1080)
T KOG1408|consen 712 LPLTMIIRMVNRNGRLRVRQLE 733 (1080)
T ss_pred CchhHhHHHHHHhhHHHHHhcc
Confidence 9987766655544444443333
No 12
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=8e-47 Score=347.38 Aligned_cols=537 Identities=19% Similarity=0.271 Sum_probs=386.8
Q ss_pred ceEEcCCCCEEEEeeCC---eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec--cCeEEEEECCCCeEEEEe
Q 005254 24 PLVVSSDGSFIACACGE---SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH--SREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~---~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~ 98 (706)
++|||++|+|+|+|.-+ .+++|++.....+..+..|...|+|++|+|.++|+++.+. |-.|.+||+........-
T Consensus 83 ~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asn 162 (1080)
T KOG1408|consen 83 CVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASN 162 (1080)
T ss_pred EEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccc
Confidence 89999999999999754 6999999999999999999999999999999999998765 556788998765554443
Q ss_pred eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-------------e------------------------e
Q 005254 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY-------------F------------------------K 141 (706)
Q Consensus 99 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~-------------~------------------------~ 141 (706)
+ -...|.+++|+.||.|+++.+ ...|++|.++.++.... + .
T Consensus 163 k-iss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~q 240 (1080)
T KOG1408|consen 163 K-ISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQ 240 (1080)
T ss_pred c-cceeEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecc
Confidence 3 457899999999999999987 47899999977651110 0 0
Q ss_pred C-----------------CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec-c----------------
Q 005254 142 G-----------------HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK-H---------------- 187 (706)
Q Consensus 142 ~-----------------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~---------------- 187 (706)
+ .+..-.|++.+. .++++|+.+|.|++++..+-..+.+++. |
T Consensus 241 GhLvEFSsRRLLDKWVqcRTTnAnCIcVs~----r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~ 316 (1080)
T KOG1408|consen 241 GHLVEFSSRRLLDKWVQCRTTNANCICVSS----RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKN 316 (1080)
T ss_pred cceeeechhhhhhhhhhhhccccceeeeec----ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccc
Confidence 0 011123444432 3599999999999999876554443321 1
Q ss_pred -------cceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceee----ecCcceeeeEEeeCCCCCcccccccccchhh
Q 005254 188 -------FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT----VPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI 256 (706)
Q Consensus 188 -------~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (706)
-....++.|.+....|.+...|..+++||+++...+.. +-+...+..+...|-+- ..
T Consensus 317 s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv------------~~ 384 (1080)
T KOG1408|consen 317 SESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNV------------HS 384 (1080)
T ss_pred cccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccc------------cC
Confidence 11245678999889999999999999999987554322 22223333332222100 00
Q ss_pred hccccccceEEEEecCCCeEEEEECCCCe---EEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEe
Q 005254 257 KKKRRSLEIHFITVGERGIVRMWNADSAC---LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTT 333 (706)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 333 (706)
.....-....|++++.|++|++|+++... ++....... .. +-....|+...+...
T Consensus 385 ~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~-----------~l-----------~ki~y~d~~~q~~~d 442 (1080)
T KOG1408|consen 385 PTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSA-----------NL-----------SKIPYEDSTQQIMHD 442 (1080)
T ss_pred cccccCCccceeEecCCCcEEEeecccccccceeecccchh-----------hh-----------hcCccccCchhhhhh
Confidence 00111123369999999999999998741 111000000 00 000111111111100
Q ss_pred eeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEE
Q 005254 334 VEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL 413 (706)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 413 (706)
...+ . --............+.+++.+| ++++|+.|...|.+++|++...+....+..|...|.|+.+.+-.-+..+
T Consensus 443 ~~~~--~-fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kL 518 (1080)
T KOG1408|consen 443 ASAG--I-FDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKL 518 (1080)
T ss_pred ccCC--c-ccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHh
Confidence 0000 0 0000111222334566777765 8999999999999999999999999999999999999996555556678
Q ss_pred EEEeeCCCcEEEEeCCC-ceEEEEEeCCCcCeEEEEEecCC-CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe
Q 005254 414 IVTGSKDNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (706)
|++++.|.-|.+||... -.+++.+.+|...|+++.|.-.| +..+++++.|..|.+--.+.... . .......-.
T Consensus 519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~-g----~~f~r~t~t 593 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS-G----RLFPRHTQT 593 (1080)
T ss_pred hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC-c----eeccccccc
Confidence 99999999999999865 45677889999999999998765 34688999998776543332110 0 000111111
Q ss_pred ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee---cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 492 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
.....+..+++.|..+++++++.|+.|+||++.+++..+.|++ |.+....+...|.|.+|++.+.|.++.++|..++
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 2234578899999999999999999999999999999999986 6677888999999999999999999999999999
Q ss_pred ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 569 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 569 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
+++..+.+|...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 674 EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999999999999999999999999999999864
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.9e-48 Score=331.53 Aligned_cols=284 Identities=28% Similarity=0.419 Sum_probs=268.0
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecC-CCEEEEEeeCCCcEEEEeCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLWDSE 429 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 429 (706)
+...++..+.|+. ++..+++++.+|.+.+|+..+...+..+.+|...+.++. |.|. ...-+++++.||++++|++.
T Consensus 173 gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~--fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAV--FHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEE--EccCCCccceeeeccCCceeeeccC
Confidence 4456666666665 899999999999999999999999999999999999999 8887 35459999999999999999
Q ss_pred CceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEE
Q 005254 430 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 509 (706)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 509 (706)
+..++..+.+|...|..++|+|+|+ +|.+++.|.+-++||+.+.. ......+|...|.+++|.|||.++
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~----------ElL~QEGHs~~v~~iaf~~DGSL~ 318 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKS----------ELLLQEGHSKGVFSIAFQPDGSLA 318 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccch----------hhHhhcccccccceeEecCCCcee
Confidence 9999999999999999999999999 99999999999999999764 455667899999999999999999
Q ss_pred EEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEe-
Q 005254 510 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT- 588 (706)
Q Consensus 510 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~- 588 (706)
++|+.|..-+|||++++..+..+.+|..+|.+++|+|+|..||+|+.|++++|||++..+.+.++.+|.+-|+.+.|+|
T Consensus 319 ~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 319 ATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred eccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 589 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 589 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
.|.+|++++.|++++||...++.+++.+.+|.+.|.++..++|+.+++|++.|.++++|.
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 788999999999999999999999999999999999999999999999999999999996
No 14
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=6.9e-43 Score=327.57 Aligned_cols=585 Identities=18% Similarity=0.238 Sum_probs=455.9
Q ss_pred eeeeeeeccceEEcCCCC--EEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC
Q 005254 15 VLQQFYGGGPLVVSSDGS--FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL 92 (706)
Q Consensus 15 ~~~~~~~~~~~~~s~dg~--~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~ 92 (706)
-+..+-++-+..+..-|. ++.++.++...+||.+....+..-..+...|+|++-..+- +.+|.. ..|.+|- .|
T Consensus 29 ~lG~vsn~VP~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~--vy~A~g-~~i~~~~--rg 103 (910)
T KOG1539|consen 29 ALGYVSNGVPFRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKDY--VYVASG-NKIYAYA--RG 103 (910)
T ss_pred hhceecCCCceeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCce--EEEecC-cEEEEEE--cc
Confidence 333333333455554333 3445556699999999988887777899999999877554 444432 3677775 44
Q ss_pred -eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC-eE----EEEeeCCCCcEEEEEEcCCCCceEEEEEec
Q 005254 93 -KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FC----THYFKGHKGVVSSILFHPDTDKSLLFSGSD 166 (706)
Q Consensus 93 -~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~-~~----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 166 (706)
...+.+..|.+.|.-+.. =|.+++++..++.+.||+..++ +. ....+.....|+++ ++|..-.+-++.|+.
T Consensus 104 k~i~~~~~~~~a~v~~l~~--fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~ 180 (910)
T KOG1539|consen 104 KHIRHTTLLHGAKVHLLLP--FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSS 180 (910)
T ss_pred ceEEEEeccccceEEEEee--ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeec
Confidence 456677778877776654 3788999999999999999874 21 12222222337766 477666667999999
Q ss_pred CCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCc-ceeeeEEeeCCCCCcc
Q 005254 167 DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFD 245 (706)
Q Consensus 167 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 245 (706)
+|.+.+|++++++.+++++++...|+++.=+|-=..++.|..+|.|.+++++..+.+..+... ..+..+.|..+|..
T Consensus 181 ~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p-- 258 (910)
T KOG1539|consen 181 QGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP-- 258 (910)
T ss_pred CCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe--
Confidence 999999999999999999999999999999998889999999999999999999999999886 88999999999864
Q ss_pred cccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeC
Q 005254 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (706)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (706)
.+++++..|.+.+||++...+..... ..+..++....+.|....++....|
T Consensus 259 --------------------~las~~~~G~m~~wDLe~kkl~~v~~---------nah~~sv~~~~fl~~epVl~ta~~D 309 (910)
T KOG1539|consen 259 --------------------LLASGRSNGDMAFWDLEKKKLINVTR---------NAHYGSVTGATFLPGEPVLVTAGAD 309 (910)
T ss_pred --------------------eEEeccCCceEEEEEcCCCeeeeeee---------ccccCCcccceecCCCceEeeccCC
Confidence 68888899999999999886554332 2345677888899999999999999
Q ss_pred CceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee-------------
Q 005254 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL------------- 392 (706)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~------------- 392 (706)
..+.+|-....... ....+.-.+|..+..++.|....+..+..+..|+.++.+++......+.+
T Consensus 310 nSlk~~vfD~~dg~---pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~ 386 (910)
T KOG1539|consen 310 NSLKVWVFDSGDGV---PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN 386 (910)
T ss_pred CceeEEEeeCCCCc---chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence 99999987744322 23445567899999999999999999999999999999887532211100
Q ss_pred -----eCCcceEEEeeeee--ecCCCEEEEEeeCCCcEEEEeCCCceEEEE-E-----eCCCcCeEEEEEecCCCeEEEE
Q 005254 393 -----AGHSEIVLCLDTCA--LSSGKILIVTGSKDNSVRLWDSESRCCVGV-G-----TGHMGAVGAVAFSKKLQNFLVS 459 (706)
Q Consensus 393 -----~~~~~~i~~~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~-----~~~~~~v~~~~~~~~~~~~l~~ 459 (706)
...-.++..+++.. -......++..-.+...+.|+..+...-+. + +.....+++++.++.|. +.+.
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~I 465 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFI 465 (910)
T ss_pred ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEE
Confidence 01122344443111 112233355555677899999987655222 2 22347899999999987 8999
Q ss_pred ecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcE
Q 005254 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI 539 (706)
Q Consensus 460 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 539 (706)
|...|.|.+|+++.+-.. ........|..+|+.++...-++.+++++.+|.+..||..+..++..++ -..++
T Consensus 466 G~S~G~Id~fNmQSGi~r-------~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~ 537 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHR-------KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSI 537 (910)
T ss_pred eccCCeEEEEEcccCeee-------cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCc
Confidence 999999999999887310 0111235799999999999999999999999999999999988777776 45678
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccC
Q 005254 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH 619 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 619 (706)
+++..+.....++.+..|-.|+++|..+.+.++.+.+|.+.|++++|||||++|++++.|++|++||+.++.++..+..
T Consensus 538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v- 616 (910)
T KOG1539|consen 538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV- 616 (910)
T ss_pred ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-
Confidence 8888888888999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CCcEEEEEEcCCCCEEEEEeCC-CcEEEEECCc
Q 005254 620 EDKIWALAVGKKTEMFATGGSD-ALVNLWHDST 651 (706)
Q Consensus 620 ~~~v~~~~~s~~~~~l~~~~~d-g~i~vw~~~~ 651 (706)
..+.+++.|||+|.+|||+..| .-|++|.-.+
T Consensus 617 d~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 617 DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 6688999999999999999988 6799996433
No 15
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=6.6e-43 Score=308.42 Aligned_cols=492 Identities=18% Similarity=0.269 Sum_probs=371.1
Q ss_pred ceeeceeeeeeeecc-----ceEEcCCCCEEEEeeCC---------eEEEEEccCCeEEEeecCCCccEEEEEEcc--CC
Q 005254 9 SYGCEPVLQQFYGGG-----PLVVSSDGSFIACACGE---------SINIVDLSNASIKSTIEGGSDTITALALSP--DD 72 (706)
Q Consensus 9 ~~~~~~~~~~~~~~~-----~~~~s~dg~~l~~~~~~---------~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~--~~ 72 (706)
.|......|++|.++ |++++||.-.+++|... .++|||..+...++.+......|+|++||+ .|
T Consensus 89 l~n~ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G 168 (626)
T KOG2106|consen 89 LYNWEERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGG 168 (626)
T ss_pred EEeehhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCC
Confidence 345566678899887 99999999999876432 499999988888888888888999999998 35
Q ss_pred CEEEEE--eccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE---eeCC-CCc
Q 005254 73 KLLFSS--GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY---FKGH-KGV 146 (706)
Q Consensus 73 ~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~---~~~~-~~~ 146 (706)
.+|+.. +.+..+.+||++.+......+..+..|....|.|.+.-|......+.+.+|+++.+...++ +..+ ..-
T Consensus 169 ~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~ 248 (626)
T KOG2106|consen 169 SLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKF 248 (626)
T ss_pred ceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceE
Confidence 666655 4466799999999999888888889999999999766555555579999999998876554 3332 367
Q ss_pred EEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeee
Q 005254 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 147 v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
|.|++|.++|+ +++|..+|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|..|| ...+.++..
T Consensus 249 Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~ 323 (626)
T KOG2106|consen 249 VLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRET 323 (626)
T ss_pred EEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc-ccccccccc
Confidence 99999999988 99999999999999988888888779999999999999996 55599999999999 444444433
Q ss_pred cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccc
Q 005254 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (706)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (706)
..++....+....
T Consensus 324 elPe~~G~iRtv~------------------------------------------------------------------- 336 (626)
T KOG2106|consen 324 ELPEQFGPIRTVA------------------------------------------------------------------- 336 (626)
T ss_pred cCchhcCCeeEEe-------------------------------------------------------------------
Confidence 3322211111111
Q ss_pred eeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
+.... +++++..+.|..=.++++
T Consensus 337 -------e~~~d--------------------------------------------------i~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 337 -------EGKGD--------------------------------------------------ILVGTTRNFILQGTLENG 359 (626)
T ss_pred -------cCCCc--------------------------------------------------EEEeeccceEEEeeecCC
Confidence 11111 333333233332223222
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeE
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 466 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 466 (706)
- .....+|......++ ..|..+. +++++.|+.+++|+ ..++... ..-..+..++.|+|.| .++.|...|..
T Consensus 360 f-~~~v~gh~delwgla--~hps~~q-~~T~gqdk~v~lW~--~~k~~wt-~~~~d~~~~~~fhpsg--~va~Gt~~G~w 430 (626)
T KOG2106|consen 360 F-TLTVQGHGDELWGLA--THPSKNQ-LLTCGQDKHVRLWN--DHKLEWT-KIIEDPAECADFHPSG--VVAVGTATGRW 430 (626)
T ss_pred c-eEEEEecccceeeEE--cCCChhh-eeeccCcceEEEcc--CCceeEE-EEecCceeEeeccCcc--eEEEeeccceE
Confidence 2 225567777888886 6666665 99999999999999 3333332 2345788999999998 79999999999
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEE-EE-eecCCcEEEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV-TF-RGHKRGIWSVEF 544 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~-~~~~~~v~~~~~ 544 (706)
.+.|.++. ..........++++++|+|+|.+||+|+.|+.|+||.+....... .. +.+..+|+.+.|
T Consensus 431 ~V~d~e~~-----------~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDw 499 (626)
T KOG2106|consen 431 FVLDTETQ-----------DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDW 499 (626)
T ss_pred EEEecccc-----------eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeee
Confidence 99998764 233333348899999999999999999999999999987553332 22 235589999999
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCCceEEEEe------------------ecccCEEEEEEEeCCCEEEEEeCCCCEEEEE
Q 005254 545 SPVDQVVITASGDKTIKIWSISDGSCLKTFE------------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (706)
Q Consensus 545 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 606 (706)
|+|+++|.+-+.|-.|..|.....+.+...+ .+...|..++-+.+.+.||+|.+.|.|++|.
T Consensus 500 S~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~ 579 (626)
T KOG2106|consen 500 SSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFS 579 (626)
T ss_pred cCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEc
Confidence 9999999999999999999543222221111 2445566677777888999999999999998
Q ss_pred CCCCe---EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 607 VRTGE---CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 607 ~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
..-.+ +...+.+|.+-|++++|.-+...+++.+.|.+|..|++
T Consensus 580 yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 580 YPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 75433 44566799999999999999999998889999999987
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.4e-46 Score=321.79 Aligned_cols=285 Identities=30% Similarity=0.474 Sum_probs=264.0
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 179 (706)
+.+.+|..+.||+|++.||+|+.+|.+++|+..+...+..|.+|...+.++.|+|..+..-+++++.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 45789999999999999999999999999999999999999999999999999998544559999999999999999999
Q ss_pred eEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcc
Q 005254 180 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK 259 (706)
Q Consensus 180 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (706)
++..+.+|...|..++|+|+|++|.+++.|.+-++||+.++..+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El------------------------------------ 296 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL------------------------------------ 296 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhh------------------------------------
Confidence 99999999999999999999999999999999999998764422
Q ss_pred ccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecccc
Q 005254 260 RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK 339 (706)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 339 (706)
T Consensus 297 -------------------------------------------------------------------------------- 296 (459)
T KOG0272|consen 297 -------------------------------------------------------------------------------- 296 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC
Q 005254 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 419 (706)
Q Consensus 340 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 419 (706)
....+|...|.+++ |.++|.. +++|+.
T Consensus 297 --------------------------------------------------L~QEGHs~~v~~ia--f~~DGSL-~~tGGl 323 (459)
T KOG0272|consen 297 --------------------------------------------------LLQEGHSKGVFSIA--FQPDGSL-AATGGL 323 (459)
T ss_pred --------------------------------------------------HhhcccccccceeE--ecCCCce-eeccCc
Confidence 13456788888887 7788877 999999
Q ss_pred CCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEE
Q 005254 420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (706)
Q Consensus 420 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (706)
|..-++||+++++++..+.+|..+|.+++|+|+|. .+++|+.|++++|||++... ....+.+|.+-|+.
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~----------~ly~ipAH~nlVS~ 392 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRS----------ELYTIPAHSNLVSQ 392 (459)
T ss_pred cchhheeecccCcEEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeecccc----------cceecccccchhhh
Confidence 99999999999999999999999999999999987 89999999999999998764 57778899999999
Q ss_pred EEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 500 LAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 500 ~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
+.|+| .|.+|++++.|++++||...+..+++.+.+|.+.|.++.+++|++++++++.|.++++|.
T Consensus 393 Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 393 VKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999 789999999999999999999999999999999999999999999999999999999995
No 17
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.9e-42 Score=323.44 Aligned_cols=535 Identities=19% Similarity=0.265 Sum_probs=411.5
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC-eE----EEEee
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL-KC----LRSWK 99 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~----~~~~~ 99 (706)
.|++.+..++.++.++.|.+|-. ...+.+.+.+|.+.|.-+..- |.+++++..++.+.||+..++ +. +..++
T Consensus 80 ~alas~~~~vy~A~g~~i~~~~r-gk~i~~~~~~~~a~v~~l~~f--Ge~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~ 156 (910)
T KOG1539|consen 80 TALASDKDYVYVASGNKIYAYAR-GKHIRHTTLLHGAKVHLLLPF--GEHLIAVDISNILFVWKTSSIQEELYLQSTFLK 156 (910)
T ss_pred EEEEecCceEEEecCcEEEEEEc-cceEEEEeccccceEEEEeee--cceEEEEEccCcEEEEEeccccccccccceeee
Confidence 45667888999999999999963 335668888898888876644 889999999999999999884 22 12222
Q ss_pred ccCCCeEEEEECCC--CCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC
Q 005254 100 GHDGPAIGMACHPS--GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 177 (706)
Q Consensus 100 ~~~~~v~~~~~s~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 177 (706)
.....|+++. +|. =+.++.|+.+|.+.+||+.+++.++.++++...|+++.-+|--+ +++.|..+|+|.++++..
T Consensus 157 ~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD--VVaiG~~~G~ViifNlK~ 233 (910)
T KOG1539|consen 157 VEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD--VVAIGLENGTVIIFNLKF 233 (910)
T ss_pred ccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcce--EEEEeccCceEEEEEccc
Confidence 2223376654 453 34688899999999999999999999999999999999999655 499999999999999999
Q ss_pred CeeEEEeecccceEEEEEEecCCCE-EEEEeCCCEEEEEeCCCCcceeeec--CcceeeeEEeeCCCCCcccccccccch
Q 005254 178 KKCVATLDKHFSRVTSMAITSDGST-LISAGRDKVVNLWDLRDYSCKLTVP--TYEMVEAVCAIPPGSAFDSFLSSYNQQ 254 (706)
Q Consensus 178 ~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (706)
++.+.+++...+.|+.++|..||+. +++++..|.+.+||++..+....+. +...+....+.+...
T Consensus 234 dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep------------ 301 (910)
T KOG1539|consen 234 DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP------------ 301 (910)
T ss_pred CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc------------
Confidence 9999999866799999999999985 5566667999999999887766554 224455555555443
Q ss_pred hhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEc-cCCCeeEEEeeCCceEEEEe
Q 005254 255 TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL-PSNQGLLCVTADQQLLLYTT 333 (706)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~ 333 (706)
.+++.+.|..+++|=.+++.-. ...-.....+..+..++.+. .++..++....|+.+..+.+
T Consensus 302 -----------Vl~ta~~DnSlk~~vfD~~dg~------pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~ 364 (910)
T KOG1539|consen 302 -----------VLVTAGADNSLKVWVFDSGDGV------PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSV 364 (910)
T ss_pred -----------eEeeccCCCceeEEEeeCCCCc------chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhh
Confidence 7889999999999876644111 11111223445555666665 67777888899998888877
Q ss_pred eeccccceee-----------EEeeEecccCceeeEeeEeC----CCCcEEEEEecCCcEEEEeCCCcee-eEeeeCC--
Q 005254 334 VEVPEKKMEL-----------ILSKRLVGYNEEILDLKFLG----EEEQYLAVATNIEQVQVYDLSSMSC-SYVLAGH-- 395 (706)
Q Consensus 334 ~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~-- 395 (706)
.........- .......-.-.++..+++.. .-.+.+++.-.+...+.|+..+... ...+...
T Consensus 365 ~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~ 444 (910)
T KOG1539|consen 365 ISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRF 444 (910)
T ss_pred hHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccc
Confidence 6543221110 01111122234566666643 2356777777888999999987655 2222211
Q ss_pred -cceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE---eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEe
Q 005254 396 -SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 396 -~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
...+.+.++|.++.|+. .+.|...|.|.+|++++|.....+ +.|.++|++++...-++ .+++++.+|.+.+|++
T Consensus 445 ~~~~~~~~av~vs~CGNF-~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 445 KKDDINATAVCVSFCGNF-VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDF 522 (910)
T ss_pred cccCcceEEEEEeccCce-EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEec
Confidence 13444455557888887 889999999999999999888887 58999999999998877 8999999999999999
Q ss_pred cCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEE
Q 005254 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 551 (706)
.... ....-.-...++++..+.....++++..|-.|+++|..+.+.++.+.+|.+.|++++|||||++|
T Consensus 523 ~~k~-----------l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWl 591 (910)
T KOG1539|consen 523 KKKV-----------LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWL 591 (910)
T ss_pred CCcc-----------eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEE
Confidence 8652 11122244567888888888899999999999999999999999999999999999999999999
Q ss_pred EEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC-CCEEEEECC
Q 005254 552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-GLVKLWTVR 608 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iwd~~ 608 (706)
++++.|++|++||+.++.++..+. -..+++++.|+|+|.+||+...| .-|++|.=.
T Consensus 592 isasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 592 ISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 999999999999999999998886 56789999999999999999998 579999643
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.2e-43 Score=287.74 Aligned_cols=287 Identities=29% Similarity=0.473 Sum_probs=260.8
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
.++|+||.+.|.++.|++|.++|++++.||.+.|||.-+...++.++-....|..++|+|.|+++|+|+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 47899999999999999999999999999999999999999999999899999999999999999999999999999997
Q ss_pred CC------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEec-CCCEEEE
Q 005254 133 GG------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS-DGSTLIS 205 (706)
Q Consensus 133 ~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 205 (706)
+. +....+.+|.+-+.++.|.+|+. +++++.|.+..+||+++++.+..+.+|.+.|.++.++| +++.+++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence 54 45567889999999999998754 99999999999999999999999999999999999999 8999999
Q ss_pred EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCe
Q 005254 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 285 (706)
Q Consensus 206 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 285 (706)
|+.|+..++||++.+.
T Consensus 205 g~cD~~aklWD~R~~~---------------------------------------------------------------- 220 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQ---------------------------------------------------------------- 220 (343)
T ss_pred cccccceeeeeccCcc----------------------------------------------------------------
Confidence 9999988888877543
Q ss_pred EEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCC
Q 005254 286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE 365 (706)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 365 (706)
T Consensus 221 -------------------------------------------------------------------------------- 220 (343)
T KOG0286|consen 221 -------------------------------------------------------------------------------- 220 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC--CCcC
Q 005254 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG--HMGA 443 (706)
Q Consensus 366 ~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~ 443 (706)
+.+.+.+|...|..+. |+|++.. +++|++|++.++||++..+.+..+.. ...+
T Consensus 221 ----------------------c~qtF~ghesDINsv~--ffP~G~a-fatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 221 ----------------------CVQTFEGHESDINSVR--FFPSGDA-FATGSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred ----------------------eeEeecccccccceEE--EccCCCe-eeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 3336677888888887 8888888 99999999999999999988887763 3568
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 522 (706)
|++++|+..|+ +|++|..|..+.+||.-..+ ....+.+|++.|+|+..+|||..+++|+.|..++||.
T Consensus 276 itSv~FS~SGR-lLfagy~d~~c~vWDtlk~e----------~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 276 ITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGE----------RVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ceeEEEccccc-EEEeeecCCceeEeeccccc----------eEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999998 89999999999999986554 6778889999999999999999999999999999994
No 19
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.1e-41 Score=312.71 Aligned_cols=577 Identities=17% Similarity=0.252 Sum_probs=424.7
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCC---EEEEEeccCeEEEEECCCC--eEEEEee
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDK---LLFSSGHSREIRVWDLSTL--KCLRSWK 99 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~---~l~s~~~d~~i~iwd~~~~--~~~~~~~ 99 (706)
..+.| +..+|+|.+..|.+||..+......+.||.++|+|+.+-|+.+ ++++|+.|+.|.+|.++.. ..+..+.
T Consensus 20 ~sw~~-~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~ 98 (764)
T KOG1063|consen 20 SSWGP-GGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQ 98 (764)
T ss_pred ccccc-cceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeec
Confidence 33434 4588999999999999988878899999999999999999887 8999999999999999843 3455666
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe--EEEEeeC--CCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF--CTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
+|...+ +++........+.+.|+.+.+||.+..+ +...+.- ...-..|+++.|+.+..+++.|+.+..|.++.-
T Consensus 99 g~~~~~--~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~ 176 (764)
T KOG1063|consen 99 GHCKEC--VCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSS 176 (764)
T ss_pred CcceeE--EEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEecc
Confidence 655554 4454444444444689999999996555 2222222 222346777788767778888999999999875
Q ss_pred CC--CeeEEEeecccceEEEEEEecCCC---EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccc
Q 005254 176 LA--KKCVATLDKHFSRVTSMAITSDGS---TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250 (706)
Q Consensus 176 ~~--~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (706)
.. .+.+..+.+|.+.|.+++|...+. +|++++.|..|++|.+.-........... .....++..
T Consensus 177 ~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~---~~t~~~~~~-------- 245 (764)
T KOG1063|consen 177 SADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED---SLTTLSNLP-------- 245 (764)
T ss_pred CCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc---ccccccCCc--------
Confidence 53 356778899999999999986544 88899999999999975433211100000 000000000
Q ss_pred ccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEE
Q 005254 251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (706)
.+.+.. ..........-...+..-+.++.+.|.+..|+.++.|.++.+
T Consensus 246 ---------------~f~~l~-----------------~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmii 293 (764)
T KOG1063|consen 246 ---------------VFMILE-----------------EIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMII 293 (764)
T ss_pred ---------------eeeeee-----------------eEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEE
Confidence 011100 000111112234467778899999999999999999999999
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc---eeeEeeeCCcceEEEeeeeee
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCAL 407 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~ 407 (706)
|...+....-........+.+......+..|++ +++.+++-+..|..++|..... .....+.+|.+.|..++ +.
T Consensus 294 W~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~--W~ 370 (764)
T KOG1063|consen 294 WKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVD--WD 370 (764)
T ss_pred EecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeee--ec
Confidence 998877655555555555666677788888887 6678888888899999994332 33446779999999999 88
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCC----ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC---------
Q 005254 408 SSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL--------- 474 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~--------- 474 (706)
|.++. +++.+.|.+-|+|-.-. ...+...+-|...++++++-+. +..+++|.....+++|+.+..
T Consensus 371 psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~ 448 (764)
T KOG1063|consen 371 PSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAIC 448 (764)
T ss_pred CCCCE-EEEeccccceeeecccccccceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHh
Confidence 99997 88899999999986542 2344455678899999999885 336889999999999976421
Q ss_pred ------C-----------------C-C-------------CCcc--------------------cccceeEEEeecCcce
Q 005254 475 ------S-----------------D-D-------------AEQP--------------------MNLKAKAVVAAHGKDI 497 (706)
Q Consensus 475 ------~-----------------~-~-------------~~~~--------------------~~~~~~~~~~~~~~~i 497 (706)
. . . .+.+ .-......+.+|...|
T Consensus 449 g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv 528 (764)
T KOG1063|consen 449 GKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEV 528 (764)
T ss_pred CccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeE
Confidence 0 0 0 0000 0011222345799999
Q ss_pred EEEEEcCCCCEEEEeeCCC-----cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce--
Q 005254 498 NSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC-- 570 (706)
Q Consensus 498 ~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-- 570 (706)
.+++.+|+|+++|+++... .|++|+..+......+.+|+-.|+.++|||||++|++.+.|.++.+|.......
T Consensus 529 ~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e 608 (764)
T KOG1063|consen 529 YALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE 608 (764)
T ss_pred EEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh
Confidence 9999999999999988654 499999999999999999999999999999999999999999999999754322
Q ss_pred --EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC--eEEEE--eccCCCcEEEEEEcCC-----CCEEEEEe
Q 005254 571 --LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG--ECIAT--YDKHEDKIWALAVGKK-----TEMFATGG 639 (706)
Q Consensus 571 --~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~--~~~~~~~v~~~~~s~~-----~~~l~~~~ 639 (706)
....+.|..-|.++.|+|++.+++|++.|..|++|..... +.+.. ...+...|+++++.|- +..++.|-
T Consensus 609 ~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 609 FRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred hhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEe
Confidence 2336679999999999999999999999999999999887 44433 2367889999998763 22677888
Q ss_pred CCCcEEEEECCch
Q 005254 640 SDALVNLWHDSTA 652 (706)
Q Consensus 640 ~dg~i~vw~~~~~ 652 (706)
+.|.|.+|+....
T Consensus 689 e~GeI~l~~~~~~ 701 (764)
T KOG1063|consen 689 EKGEIVLWRRKRE 701 (764)
T ss_pred cccEEEEEecccc
Confidence 9999999997643
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-41 Score=278.92 Aligned_cols=292 Identities=22% Similarity=0.371 Sum_probs=270.6
Q ss_pred eeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC
Q 005254 341 MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD 420 (706)
Q Consensus 341 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d 420 (706)
..+...+.+.+|...|.++.|.+ +.+++++++.||.+.+||.-+......++-....|...+ +.|.++. ++.|+-|
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA--~sPSg~~-VAcGGLd 118 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCA--YSPSGNF-VACGGLD 118 (343)
T ss_pred eeeeeEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEE--ECCCCCe-EEecCcC
Confidence 34556688999999999999987 889999999999999999999988888888888888777 8888887 9999999
Q ss_pred CcEEEEeCCCc------eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecC
Q 005254 421 NSVRLWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494 (706)
Q Consensus 421 g~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (706)
....||++.+. +..+.+.+|.+.+.++.|.+|+. |++++.|.+..+||++.+. ....+.+|.
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~----------~~~~f~GH~ 186 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQ----------QTQVFHGHT 186 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccce----------EEEEecCCc
Confidence 99999999865 45567889999999999999865 9999999999999999875 777889999
Q ss_pred cceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 495 KDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 495 ~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
..|.++.++| +++.+++|+-|+..++||++.+...+.|.+|...|.++.|.|+|.-+++|+.|++.++||++..+.+..
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ 266 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV 266 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred Eeec--ccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 574 FEGH--TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 574 ~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+... ..+|++++||..|++|++|..|.++.+||.-.++.+..+.+|.+.|+++..+|||..|+||+.|.+++||.
T Consensus 267 ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 267 YSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 8732 35899999999999999999999999999999999999999999999999999999999999999999994
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-40 Score=299.35 Aligned_cols=469 Identities=18% Similarity=0.251 Sum_probs=347.6
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeecc
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 101 (706)
.++.|+|...+++++--+ .+.|||.++...++.++-..-+|.+..|-+..+++++|++|..|+||+..+++.+..|..|
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH 96 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH 96 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc
Confidence 369999999998877654 9999999999999999988999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCC-eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee
Q 005254 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180 (706)
Q Consensus 102 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 180 (706)
..-|++++.+|...+++++++|-+|++||++.+ .+.+.+.+|..-|.+++|.|. +.+-+++++-|++|++|.+.+..+
T Consensus 97 ~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~ 175 (794)
T KOG0276|consen 97 SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHP 175 (794)
T ss_pred ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC-CccceeeeeccccEEEEEcCCCCC
Confidence 999999999999999999999999999999876 577889999999999999997 445699999999999999999999
Q ss_pred EEEeecccceEEEEEEecCC--CEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhc
Q 005254 181 VATLDKHFSRVTSMAITSDG--STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 258 (706)
Q Consensus 181 ~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (706)
..++.+|...|+|+.+-+.| .+|++|+.|..+++||.++..+++++..+
T Consensus 176 nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH----------------------------- 226 (794)
T KOG0276|consen 176 NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH----------------------------- 226 (794)
T ss_pred ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc-----------------------------
Confidence 99999999999999998755 69999999999999999999888776543
Q ss_pred cccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccc
Q 005254 259 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE 338 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 338 (706)
T Consensus 227 -------------------------------------------------------------------------------- 226 (794)
T KOG0276|consen 227 -------------------------------------------------------------------------------- 226 (794)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee
Q 005254 339 KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS 418 (706)
Q Consensus 339 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 418 (706)
...|..+.|.| .-.++++|+.||++++|+..+.+....+.-..+.+.|+. ....++. ++.|.
T Consensus 227 --------------t~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~--~~k~~~~-i~vG~ 288 (794)
T KOG0276|consen 227 --------------TNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIA--AHKGDGK-IAVGF 288 (794)
T ss_pred --------------cccceEEEecC-CCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEe--ecCCCCe-EEEec
Confidence 33333344433 445677777777777777777777777777778888886 5566666 88888
Q ss_pred CCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCC------CCcccccceeEEEee
Q 005254 419 KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD------AEQPMNLKAKAVVAA 492 (706)
Q Consensus 419 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~------~~~~~~~~~~~~~~~ 492 (706)
++|.+.+ .+....+ .+..++.|+ ++-+... .|.--++...... ...+...+.. -.
T Consensus 289 Deg~i~v-~lgreeP------------~vsMd~~gK-Iiwa~~~--ei~~~~~ks~~~~~ev~DgErL~LsvKeL---gs 349 (794)
T KOG0276|consen 289 DEGSVTV-KLGREEP------------AVSMDSNGK-IIWAVHS--EIQAVNLKSVGAQKEVTDGERLPLSVKEL---GS 349 (794)
T ss_pred cCCcEEE-EccCCCC------------ceeecCCcc-EEEEcCc--eeeeeeceeccCcccccCCccccchhhhc---cc
Confidence 8887754 2222222 233333333 2222211 1111111111100 0001111111 11
Q ss_pred cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEE
Q 005254 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 572 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 572 (706)
..-....++.+|+|+++++++ ||.-.||..-.. -..+.+.-....|++|.+..++--.++.|+++ ++.+..+
T Consensus 350 ~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~-----RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~k 421 (794)
T KOG0276|consen 350 VEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALAL-----RNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHK 421 (794)
T ss_pred cccchHHhccCCCCcEEEEec-CccEEEEEeeeh-----hhcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecc
Confidence 112235688899999888775 788888763211 11244556778999998888888788889999 6777777
Q ss_pred EEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 573 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 573 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
.+..... +..--.|.+|. ...++.+++||-.+++.++.+.-. ...+.|+.+|.+++.++.| ...+..++..
T Consensus 422 si~~~~~----~e~i~gg~Llg-~~ss~~~~fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~-Sfyil~~n~d 492 (794)
T KOG0276|consen 422 SIRPDMS----AEGIFGGPLLG-VRSSDFLCFYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDD-SFYILKFNAD 492 (794)
T ss_pred ccccccc----eeeecCCceEE-EEeCCeEEEEEcccceEEEEEeec---cceeEEecCCCEEEEEecC-ceeEEEecHH
Confidence 6653221 22223444444 445677999999999999999643 3467899899888877655 5778887766
Q ss_pred hHH
Q 005254 653 AER 655 (706)
Q Consensus 653 ~~~ 655 (706)
...
T Consensus 493 ~v~ 495 (794)
T KOG0276|consen 493 AVA 495 (794)
T ss_pred HHH
Confidence 543
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-41 Score=276.20 Aligned_cols=291 Identities=24% Similarity=0.371 Sum_probs=258.0
Q ss_pred eEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC-----ceeeEeeeCCcceEEEeeeeeecCCCEEEEEe
Q 005254 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 417 (706)
Q Consensus 343 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 417 (706)
+.....+.+|++.|..++..+.+.+.+..++.|..+.+|++.. +..++.+.+|...|..+. .+++++. .+++
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~--~s~dg~~-alS~ 81 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVV--LSSDGNF-ALSA 81 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceE--EccCCce-EEec
Confidence 4455678899999999999999999999999999999999864 566889999999999997 7788887 9999
Q ss_pred eCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec--Cc
Q 005254 418 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH--GK 495 (706)
Q Consensus 418 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 495 (706)
+.|+.+++||+.+++..+.+.+|...|.+++|+++.+ .+++|+.|.+|++|+.-.. +......+ ..
T Consensus 82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~-----------ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGV-----------CKYTIHEDSHRE 149 (315)
T ss_pred cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeeccc-----------EEEEEecCCCcC
Confidence 9999999999999999999999999999999999977 8999999999999998764 33333333 67
Q ss_pred ceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 496 DINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 496 ~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
.|+|+.|+|+ ..++++++.|++|++||+.+.+....+.+|.+.++.+++||||...++|+.||.+.+||++.++.+..
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence 8999999998 78999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred EeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc----C-----CCcEEEEEEcCCCCEEEEEeCCCcE
Q 005254 574 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----H-----EDKIWALAVGKKTEMFATGGSDALV 644 (706)
Q Consensus 574 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~-----~~~v~~~~~s~~~~~l~~~~~dg~i 644 (706)
+. |...|.+++|+|+.-.|+.+ .+..|+|||+.++.++..++. . .-...+++||+||..|+.|..|+.|
T Consensus 230 l~-a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 230 LE-AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI 307 (315)
T ss_pred cc-CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence 87 88999999999986555544 556699999999998877752 1 1234678999999999999999999
Q ss_pred EEEECC
Q 005254 645 NLWHDS 650 (706)
Q Consensus 645 ~vw~~~ 650 (706)
++|.+.
T Consensus 308 rv~qv~ 313 (315)
T KOG0279|consen 308 RVWQVA 313 (315)
T ss_pred EEEEee
Confidence 999875
No 23
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.4e-41 Score=286.33 Aligned_cols=332 Identities=21% Similarity=0.332 Sum_probs=273.3
Q ss_pred EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 005254 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 131 (706)
.+..|..|...|.+++.+|+.+++|+|+.|..-.+|+..++.....+.+|+..|+++.||.||.+||+|+-+|.|+||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCE
Q 005254 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV 211 (706)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 211 (706)
.++.....+...-..+.-+.|+|.+. +|+.|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|++++++..||+
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCceEEEeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 99998888887788899999999554 5999999999999999998888999999999999999999999999999999
Q ss_pred EEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeecc
Q 005254 212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 291 (706)
Q Consensus 212 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 291 (706)
|++|+..++++...+...+..
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~----------------------------------------------------------- 234 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGL----------------------------------------------------------- 234 (399)
T ss_pred EEEEecCCCceeEEecccccC-----------------------------------------------------------
Confidence 999999988765544321100
Q ss_pred CccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEE
Q 005254 292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371 (706)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 371 (706)
T Consensus 235 -------------------------------------------------------------------------------- 234 (399)
T KOG0296|consen 235 -------------------------------------------------------------------------------- 234 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe--------CCCcC
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--------GHMGA 443 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~ 443 (706)
...++. +...+.. ++.|..++.+++-+..+++.+.... .+...
T Consensus 235 --------------------------~~~~~~--~~~~~~~-~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~ 285 (399)
T KOG0296|consen 235 --------------------------ELPCIS--LNLAGST-LTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL 285 (399)
T ss_pred --------------------------cCCccc--cccccce-eEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence 000111 1111111 4444444444444444444443332 23333
Q ss_pred eEE---EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEE
Q 005254 444 VGA---VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520 (706)
Q Consensus 444 v~~---~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 520 (706)
+.+ +.++..-+ +.++|+-||+|.|||+... ..+..-.|...|+.+.|-+ ..+|++++.+|.|+.
T Consensus 286 ~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~~-----------~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 286 DESVESIPSSSKLP-LAACGSVDGTIAIYDLAAS-----------TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQ 352 (399)
T ss_pred hhhhhhcccccccc-hhhcccccceEEEEecccc-----------hhheeccCCCceEEEEEcC-cchheeeccCceEEe
Confidence 444 44444544 7889999999999999865 4445566888899999998 789999999999999
Q ss_pred EeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
||.++|++...+.+|..+|.+++++|+.+++++++.|++.+|++..
T Consensus 353 wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 353 WDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999999999999999999864
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.2e-41 Score=269.29 Aligned_cols=293 Identities=28% Similarity=0.484 Sum_probs=252.7
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEE
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 236 (706)
...+|++++.|.+|++|...+|.+.++++...+.|..+.++|+++.|++++ ...|++||+++...
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np-------------- 73 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNP-------------- 73 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCC--------------
Confidence 446799999999999999999999999998889999999999999999887 45688888765321
Q ss_pred eeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCC
Q 005254 237 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN 316 (706)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T Consensus 74 -------------------------------------------------------------------------------- 73 (311)
T KOG0315|consen 74 -------------------------------------------------------------------------------- 73 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCc
Q 005254 317 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS 396 (706)
Q Consensus 317 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~ 396 (706)
.++..+.+|.
T Consensus 74 ----------------------------------------------------------------------~Pv~t~e~h~ 83 (311)
T KOG0315|consen 74 ----------------------------------------------------------------------NPVATFEGHT 83 (311)
T ss_pred ----------------------------------------------------------------------CceeEEeccC
Confidence 1233566777
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCC
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 476 (706)
..|..+. |..+++. +++|++||+++|||++...+.+.++ +..+|+++..+|+.. -|+++.++|.|++||+.....
T Consensus 84 kNVtaVg--F~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 84 KNVTAVG--FQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred CceEEEE--EeecCeE-EEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCcc
Confidence 7888887 7788888 9999999999999999966555554 669999999999865 799999999999999986521
Q ss_pred CCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc------cEEEEEeecCCcEEEEEEccCCCE
Q 005254 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL------VSVVTFRGHKRGIWSVEFSPVDQV 550 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~~~~s~~~~~ 550 (706)
...........|.++.+.|||.+++.+...|..++|++... +++..++.|++-+..+.+|||+++
T Consensus 159 ---------~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 159 ---------THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred ---------ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE
Confidence 12223334577999999999999999999999999998654 566678889999999999999999
Q ss_pred EEEecCCCcEEEEEcCCC-ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEE
Q 005254 551 VITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV 628 (706)
Q Consensus 551 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 628 (706)
||+++.|.+++||+.++. +.-..+.+|...+..++||.||+||++++.|+.+++|++..++.++.+.+|.....|++.
T Consensus 230 lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred EEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 999999999999999887 667788899999999999999999999999999999999999999999999988888775
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-40 Score=271.05 Aligned_cols=286 Identities=20% Similarity=0.371 Sum_probs=249.3
Q ss_pred ceEEcCC-CCEEEEeeCC-eEEEEEcc-----CCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEE
Q 005254 24 PLVVSSD-GSFIACACGE-SINIVDLS-----NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR 96 (706)
Q Consensus 24 ~~~~s~d-g~~l~~~~~~-~i~i~d~~-----~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~ 96 (706)
+++..+. -+.++.++.+ .+.+|++. .|.+++.++||+..|..++.++||++.++++.|+.+++||+.+++..+
T Consensus 20 ~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~ 99 (315)
T KOG0279|consen 20 ALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR 99 (315)
T ss_pred EEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEE
Confidence 5666666 4455555555 79999874 466789999999999999999999999999999999999999999999
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeC-CCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG-HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
.|.+|...|.+++|++|++.+++|+.|.+|++||.-.+........ +...|.|++|+|+....++++++.|++|++||+
T Consensus 100 ~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl 179 (315)
T KOG0279|consen 100 RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNL 179 (315)
T ss_pred EEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEcc
Confidence 9999999999999999999999999999999999876654444433 378999999999977888999999999999999
Q ss_pred CCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchh
Q 005254 176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255 (706)
Q Consensus 176 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (706)
++.+....+.+|.+.++.++++|||.++++|+.||.+.+||++.++.+..+.....+.+++|+|+.
T Consensus 180 ~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr-------------- 245 (315)
T KOG0279|consen 180 RNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR-------------- 245 (315)
T ss_pred CCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEee
Q 005254 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 334 (706)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 334 (706)
+.++...+..|++||++++........+.... ..........+++++++|+.|+++..++.+.+|.+.
T Consensus 246 ----------ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 246 ----------YWLCAATATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ----------eeEeeccCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 56777777789999999997665554443333 233345566788899999999999999999999764
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.4e-40 Score=265.00 Aligned_cols=295 Identities=23% Similarity=0.459 Sum_probs=250.2
Q ss_pred CEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe--eEEEeecccceEE
Q 005254 115 GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVT 192 (706)
Q Consensus 115 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~ 192 (706)
-+|++++.|.+|++|...+|.+..++....+.|..+...|+++. |++++.. .|++||+++++ ++.++.+|...|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~--LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKD--LAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcch--hhhccCC-eeEEEEccCCCCCceeEEeccCCceE
Confidence 47999999999999999999999999988999999999998775 7777665 59999998876 5889999999999
Q ss_pred EEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecC
Q 005254 193 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 272 (706)
Q Consensus 193 ~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (706)
++.|..+|+.+++|++||++++||++...+.+.+.
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--------------------------------------------- 122 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--------------------------------------------- 122 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhcc---------------------------------------------
Confidence 99999999999999999999999998643332222
Q ss_pred CCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEeccc
Q 005254 273 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352 (706)
Q Consensus 273 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (706)
T Consensus 123 -------------------------------------------------------------------------------- 122 (311)
T KOG0315|consen 123 -------------------------------------------------------------------------------- 122 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 432 (706)
+..+|.++. ..|+... |++|..+|.|++||+....
T Consensus 123 ------------------------------------------~~spVn~vv--lhpnQte-Lis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 123 ------------------------------------------HNSPVNTVV--LHPNQTE-LISGDQSGNIRVWDLGENS 157 (311)
T ss_pred ------------------------------------------CCCCcceEE--ecCCcce-EEeecCCCcEEEEEccCCc
Confidence 223444443 4444444 8888888899999988776
Q ss_pred EEEEE-eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE
Q 005254 433 CVGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 433 ~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (706)
+...+ +.....|.++.+.|+|. +++.+...|..++|++.... ....+.+...+..|...+..+.+|||+++||+
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~----~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQ----TASELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCC----ccccceEhhheecccceEEEEEECCCCcEEEe
Confidence 55543 44567899999999998 89999999999999998732 23344566678899999999999999999999
Q ss_pred eeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 512 GSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 512 ~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
++.|.+++||+..+. +....+.+|...+...+||.|+++|++++.|+.+++||+..++.++.+.+|.....+++..
T Consensus 233 ~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999988 6777889999999999999999999999999999999999999999999998888777653
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.9e-41 Score=292.27 Aligned_cols=326 Identities=25% Similarity=0.406 Sum_probs=285.5
Q ss_pred eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe--eE--EEee----------cccceEEEEEEecCCCEEEEE
Q 005254 141 KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CV--ATLD----------KHFSRVTSMAITSDGSTLISA 206 (706)
Q Consensus 141 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~--~~~~----------~~~~~v~~~~~~~~~~~l~~~ 206 (706)
..|..+|.+.+|+|-.+ .++++|+.|-..++|++.... .. ..++ .....|++++|+.+|.+|++|
T Consensus 175 l~~~~~V~~~~WnP~~~-~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRD-GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred ccCCCceEEEecCchhh-hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 34999999999999754 358999999999999987511 11 1111 123579999999999999999
Q ss_pred eCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeE
Q 005254 207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286 (706)
Q Consensus 207 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 286 (706)
..||.+++|+....
T Consensus 254 ~~~G~~riw~~~G~------------------------------------------------------------------ 267 (524)
T KOG0273|consen 254 SEDGEARIWNKDGN------------------------------------------------------------------ 267 (524)
T ss_pred ecCcEEEEEecCch------------------------------------------------------------------
Confidence 99999999986421
Q ss_pred EeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCC
Q 005254 287 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 366 (706)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 366 (706)
T Consensus 268 -------------------------------------------------------------------------------- 267 (524)
T KOG0273|consen 268 -------------------------------------------------------------------------------- 267 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEE
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA 446 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 446 (706)
....+..|.++|.++. +...+.+ +++++.|+++.+||..++...+.+..|..+-..
T Consensus 268 ---------------------l~~tl~~HkgPI~slK--Wnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lD 323 (524)
T KOG0273|consen 268 ---------------------LISTLGQHKGPIFSLK--WNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEFHSAPALD 323 (524)
T ss_pred ---------------------hhhhhhccCCceEEEE--EcCCCCE-EEeccCCccEEEEeccCceEEEeeeeccCCccc
Confidence 1124556888888887 6677777 999999999999999999999999999888778
Q ss_pred EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 005254 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL 526 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 526 (706)
+.|-.+.. +++.+.|+.|+++.+.... +...+.+|.++|.++.|.|.|.+|++++.|++++||.....
T Consensus 324 VdW~~~~~--F~ts~td~~i~V~kv~~~~----------P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 324 VDWQSNDE--FATSSTDGCIHVCKVGEDR----------PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eEEecCce--EeecCCCceEEEEEecCCC----------cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 88887754 9999999999999998654 67778889999999999999999999999999999999999
Q ss_pred cEEEEEeecCCcEEEEEEccCC---------CEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEe
Q 005254 527 VSVVTFRGHKRGIWSVEFSPVD---------QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 597 (706)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 597 (706)
.....+..|...|..+.|+|+| ..+++++.|++|++||+..+.++..|..|..+|.+++|+|+|+|||+|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 9999999999999999999975 4799999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 598 ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.||.|.+|+.++++.++.+.+ .+.|..++|+.+|.+|..+-.||.+++-|+.
T Consensus 472 ~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999976 5679999999999999999999999998874
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.5e-40 Score=279.36 Aligned_cols=340 Identities=19% Similarity=0.303 Sum_probs=283.0
Q ss_pred eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
.-+..|..|+..|.+++.+|+.+++|+|+.|..-++|+..+|.....+.+|+..|+++.|+.+|.. |++|..+|.|+|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgtl--LATGdmsG~v~v 132 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTL--LATGDMSGKVLV 132 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceE--EEecCCCccEEE
Confidence 345678889999999999999999999999999999999999999999999999999999998876 999999999999
Q ss_pred EECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccccc
Q 005254 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 252 (706)
Q Consensus 173 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (706)
|...++.....+......+.-|.|+|.+..|+.|+.||.+.+|.+.++.
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~------------------------------- 181 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA------------------------------- 181 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-------------------------------
Confidence 9999999988887777889999999999999999999999999876431
Q ss_pred chhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEE
Q 005254 253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 332 (706)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (706)
T Consensus 182 -------------------------------------------------------------------------------- 181 (399)
T KOG0296|consen 182 -------------------------------------------------------------------------------- 181 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCE
Q 005254 333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412 (706)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 412 (706)
..+.+.+|..++++=. +.|++++
T Consensus 182 -------------------------------------------------------~~kv~~Gh~~~ct~G~--f~pdGKr 204 (399)
T KOG0296|consen 182 -------------------------------------------------------LCKVMSGHNSPCTCGE--FIPDGKR 204 (399)
T ss_pred -------------------------------------------------------eeeEecCCCCCccccc--ccCCCce
Confidence 1124556666666666 8899888
Q ss_pred EEEEeeCCCcEEEEeCCCceEEEEEeC-CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe
Q 005254 413 LIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (706)
++++..||+|++||+.+++++..+.. .....+++.++..+. .++.|..++.+++-+...++....... .......
T Consensus 205 -~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~-~~~~g~~e~~~~~~~~~sgKVv~~~n~--~~~~l~~ 280 (399)
T KOG0296|consen 205 -ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS-TLTKGNSEGVACGVNNGSGKVVNCNNG--TVPELKP 280 (399)
T ss_pred -EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc-eeEeccCCccEEEEccccceEEEecCC--CCccccc
Confidence 99999999999999999999887763 344567788887766 788888888888776655432111110 0111112
Q ss_pred ecCc---ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 492 AHGK---DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 492 ~~~~---~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
.+.. .|..+.++..-.+.|+|+-||+|.|||+...++...+. |..+|+.+.|-+ ..+|++++.+|.|+.||.++|
T Consensus 281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred cchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeecccc
Confidence 2333 34445555567889999999999999998877666555 889999999998 789999999999999999999
Q ss_pred ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 569 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 569 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
+++.++.+|...|.+++++|+.+++++++.|++.+||++.
T Consensus 359 ~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 359 QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999999999999874
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.3e-40 Score=287.27 Aligned_cols=324 Identities=25% Similarity=0.421 Sum_probs=277.2
Q ss_pred ccCCCeEEEEECCCCC-EEEEecCCCcEEEEECCC--Ce--EEEEee----------CCCCcEEEEEEcCCCCceEEEEE
Q 005254 100 GHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDG--GF--CTHYFK----------GHKGVVSSILFHPDTDKSLLFSG 164 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~--~~--~~~~~~----------~~~~~v~~~~~~~~~~~~~l~~~ 164 (706)
.|..+|.+.+|+|-.. .+++++.|...++|++.. .. ....++ .....|++++|+.+|.. |++|
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~--LatG 253 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL--LATG 253 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe--EEEe
Confidence 3999999999999666 899999999999999864 11 111111 13467999999998886 9999
Q ss_pred ecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCc
Q 005254 165 SDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAF 244 (706)
Q Consensus 165 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (706)
+.||.+++|+. .|..+.++..|.++|.++.|+.+|.+|++++.|+++.+||..++...+.++.
T Consensus 254 ~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~---------------- 316 (524)
T KOG0273|consen 254 SEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF---------------- 316 (524)
T ss_pred ecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee----------------
Confidence 99999999996 7888889999999999999999999999999999999999876554433221
Q ss_pred ccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEee
Q 005254 245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA 324 (706)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 324 (706)
T Consensus 317 -------------------------------------------------------------------------------- 316 (524)
T KOG0273|consen 317 -------------------------------------------------------------------------------- 316 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeee
Q 005254 325 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT 404 (706)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 404 (706)
|..+-..++
T Consensus 317 ----------------------------------------------------------------------~s~~~lDVd- 325 (524)
T KOG0273|consen 317 ----------------------------------------------------------------------HSAPALDVD- 325 (524)
T ss_pred ----------------------------------------------------------------------ccCCccceE-
Confidence 222211222
Q ss_pred eeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccc
Q 005254 405 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 405 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 484 (706)
+.. +.. +++.+.|+.|+++.+....++.++.+|.+.|.++.|.|.+. +|++++.|+++++|......
T Consensus 326 -W~~-~~~-F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~--------- 392 (524)
T KOG0273|consen 326 -WQS-NDE-FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQSN--------- 392 (524)
T ss_pred -Eec-Cce-EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCCc---------
Confidence 222 222 89999999999999999999999999999999999999988 99999999999999976543
Q ss_pred ceeEEEeecCcceEEEEEcCCC---------CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec
Q 005254 485 KAKAVVAAHGKDINSLAVAPND---------SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555 (706)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 555 (706)
....+.+|...|..+.|+|.| ..+++++.|++|++||+..+.++..|..|..+|.+++|+|+|+++|+|+
T Consensus 393 -~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 393 -SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred -chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 566778899999999999954 5899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 556 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 556 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
.||.|.+|+.++++..+.+. ..+.|..++|+.+|.+|..+-.|+.+.+.|++
T Consensus 472 ~dg~V~iws~~~~~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQ-GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCeeEeccccchheeEeec-CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999999999987 45679999999999999999999999999875
No 30
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=269.17 Aligned_cols=491 Identities=17% Similarity=0.213 Sum_probs=362.3
Q ss_pred eeeeeeecc------ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc-------
Q 005254 15 VLQQFYGGG------PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS------- 81 (706)
Q Consensus 15 ~~~~~~~~~------~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d------- 81 (706)
.++-+|+-. ++-+-|.|.++.+. .....+|+.+...+ +...||...|.|++.+||.-.+|+|-..
T Consensus 55 ~LewvygYRG~dcR~Nly~lptgE~vyfv-A~V~Vl~n~ee~~Q-r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~ 132 (626)
T KOG2106|consen 55 KLEWVYGYRGVDCRNNLYLLPTGELVYFV-AAVGVLYNWEERSQ-RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPL 132 (626)
T ss_pred eeEEEEeecceeeeceeEEccCccEEEEe-ccEEEEEeehhhhc-ccccCCCCceEEEeecCCceeeccCcccccCCCcC
Confidence 455555443 77788888766554 56778888755443 5577899999999999999888876333
Q ss_pred -CeEEEEECCCCeEEEEeeccCCCeEEEEECC--CCCEEEEe--cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCC
Q 005254 82 -REIRVWDLSTLKCLRSWKGHDGPAIGMACHP--SGGLLATA--GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDT 156 (706)
Q Consensus 82 -~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 156 (706)
..++|||..+..-+..+......|+|++||+ .|.+|+.. +.+..+.+||++.+......+..+..|....|+|.+
T Consensus 133 ~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd 212 (626)
T KOG2106|consen 133 QPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTD 212 (626)
T ss_pred CCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCC
Confidence 3699999988888888888889999999998 45566665 356779999999998888888888899999999987
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEEEe---ec-ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCccee
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVATL---DK-HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~ 232 (706)
.. ++.....|.+.+|+++.+...+.. .. ....|.|++|.++|. +++|..+|.|.+|+..+.+..+..
T Consensus 213 ~n--liit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~------ 283 (626)
T KOG2106|consen 213 PN--LIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQV------ 283 (626)
T ss_pred Cc--EEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEe------
Confidence 66 555556678999999888765543 22 236799999999986 889999999999997654433221
Q ss_pred eeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEE
Q 005254 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV 312 (706)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (706)
T Consensus 284 -------------------------------------------------------------------------------- 283 (626)
T KOG2106|consen 284 -------------------------------------------------------------------------------- 283 (626)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc-eeeEe
Q 005254 313 LPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCSYV 391 (706)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~-~~~~~ 391 (706)
..|++.|.+++... ++.+ +++..|..|..||-.-. .....
T Consensus 284 -------------------------------------~aH~ggv~~L~~lr-~Gtl-lSGgKDRki~~Wd~~y~k~r~~e 324 (626)
T KOG2106|consen 284 -------------------------------------HAHDGGVFSLCMLR-DGTL-LSGGKDRKIILWDDNYRKLRETE 324 (626)
T ss_pred -------------------------------------eecCCceEEEEEec-CccE-eecCccceEEecccccccccccc
Confidence 13444455554442 3333 33777777777772211 11224
Q ss_pred eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEe
Q 005254 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 392 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
++...+++..+. +.... ++.|...+.|..=.++++-.+ ...+|......++.+|+.. .+++++.|+.+++|+
T Consensus 325 lPe~~G~iRtv~----e~~~d-i~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~- 396 (626)
T KOG2106|consen 325 LPEQFGPIRTVA----EGKGD-ILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN- 396 (626)
T ss_pred CchhcCCeeEEe----cCCCc-EEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChh-heeeccCcceEEEcc-
Confidence 455666776664 22333 777777777766666655443 3457888999999999865 899999999999999
Q ss_pred cCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEE
Q 005254 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 551 (706)
.. ...-......+..|+.|+|.| .++.|+..|...+.|.++...+..-. ...+++++.|+|+|.+|
T Consensus 397 ~~------------k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 397 DH------------KLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFL 462 (626)
T ss_pred CC------------ceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEE
Confidence 21 222223345678999999999 99999999999999999855555444 48999999999999999
Q ss_pred EEecCCCcEEEEEcCCCce-EEEE-eecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE--------------E
Q 005254 552 ITASGDKTIKIWSISDGSC-LKTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--------------T 615 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~~~~-~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------~ 615 (706)
|.|+.|+.|+||.+..+.. .... ..+..+|+.+.||+|+++|.+-+-|-.|..|....-+.+. -
T Consensus 463 Avgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lG 542 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLG 542 (626)
T ss_pred EEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEE
Confidence 9999999999999875533 2222 2344899999999999999999999999999543222111 1
Q ss_pred e----ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHH
Q 005254 616 Y----DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREE 657 (706)
Q Consensus 616 ~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 657 (706)
+ -.|...|..++-+.+.+++++|.+.|.|++|..+-....+.
T Consensus 543 F~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~ 588 (626)
T KOG2106|consen 543 FEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAP 588 (626)
T ss_pred EEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccc
Confidence 1 13566677888888999999999999999999876665543
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-39 Score=275.63 Aligned_cols=289 Identities=28% Similarity=0.478 Sum_probs=268.2
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
....+.++..++..+.|.| ....+++++.+++|++||..+++....+++|...+..+. +...++. +++++.|-.+.
T Consensus 100 l~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~--~~a~Gk~-l~tcSsDl~~~ 175 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDIS--FDASGKY-LATCSSDLSAK 175 (406)
T ss_pred chhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEE--EecCccE-EEecCCccchh
Confidence 3345667788888888865 778889999999999999999999999999999999887 7777776 99999999999
Q ss_pred EEeCCC-ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 425 LWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 425 i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
+||..+ .++++.+.+|...|.+++|-|.|. ++++++.|.+|+.|++..+. +...+.+|...+..++.+
T Consensus 176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~----------cv~t~~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGY----------CVKTFPGHSEWVRMVRVN 244 (406)
T ss_pred heeHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccce----------eEEeccCchHhEEEEEec
Confidence 999987 567777889999999999999986 99999999999999999875 788899999999999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccC---------------CCEEEEecCCCcEEEEEcCCC
Q 005254 504 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV---------------DQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~dg~i~iwd~~~~ 568 (706)
.||.++++++.|.++++|-+.+++....++.|..+|.+++|.|. ++++.+++.|++|++||+.++
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 99999999999999999999999999999999999999999763 258999999999999999999
Q ss_pred ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 569 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 569 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
.++.++.+|.+.|..++|+|.|+||+++.+|+++++||++++++...+..|..-|+++.|..+-.+++||+-|..+++|.
T Consensus 325 ~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 325 MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-37 Score=279.54 Aligned_cols=412 Identities=19% Similarity=0.304 Sum_probs=320.8
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
+++..++..|.++.|+|...+++++-.+|.|.|||.++...+..+.-...+|.+..|.+ +.+++++|+.|..|+||+.
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia--RknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA--RKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee--ccceEEEecCCceEEEEec
Confidence 34555889999999999999999999999999999999999999999999999999998 5567999999999999999
Q ss_pred CCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchh
Q 005254 176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255 (706)
Q Consensus 176 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (706)
.+++.+..+..|...|.+++.+|.-.++++++.|-.|++||.+..
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~----------------------------------- 129 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE----------------------------------- 129 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc-----------------------------------
Confidence 999999999999999999999999999999999999999998642
Q ss_pred hhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeee
Q 005254 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 335 (706)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 335 (706)
T Consensus 130 -------------------------------------------------------------------------------- 129 (794)
T KOG0276|consen 130 -------------------------------------------------------------------------------- 129 (794)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEE
Q 005254 336 VPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 415 (706)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 415 (706)
......+.+|..-|.+++|.|.+.+.+++++-|++|++|.+.+..+..++.+|...|.|++... ..++.+++
T Consensus 130 -------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~-~gdkpylI 201 (794)
T KOG0276|consen 130 -------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYT-GGDKPYLI 201 (794)
T ss_pred -------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEecc-CCCcceEE
Confidence 2233566788899999999999999999999999999999999999999999999999999422 23345699
Q ss_pred EeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCc
Q 005254 416 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (706)
Q Consensus 416 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (706)
+|++|..+++||.++..+++++.+|...|..+.|+|.-+ ++++|+.||++++|+..+.+ ....+.-.-.
T Consensus 202 sgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~----------lE~tLn~gle 270 (794)
T KOG0276|consen 202 SGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYK----------LEKTLNYGLE 270 (794)
T ss_pred ecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCccee----------hhhhhhcCCc
Confidence 999999999999999999999999999999999999977 99999999999999977654 2333334455
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee--------c--------------------------------
Q 005254 496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--------H-------------------------------- 535 (706)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~-------------------------------- 535 (706)
.+.|++..+.++.+++|..+|.|.+ .+-..++...+.. |
T Consensus 271 RvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs 349 (794)
T KOG0276|consen 271 RVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGS 349 (794)
T ss_pred eEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccc
Confidence 6888888888888888887776554 2221111111110 0
Q ss_pred -CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE
Q 005254 536 -KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614 (706)
Q Consensus 536 -~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 614 (706)
.--...++-+|+|++++++ .||.-.||..-.. . ..+.+.-....|++|.+..++-.+++.|+++ ++.+...
T Consensus 350 ~eiyPq~L~hsPNGrfV~Vc-gdGEyiIyTala~--R---nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~k 421 (794)
T KOG0276|consen 350 VEIYPQTLAHSPNGRFVVVC-GDGEYIIYTALAL--R---NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHK 421 (794)
T ss_pred cccchHHhccCCCCcEEEEe-cCccEEEEEeeeh--h---hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecc
Confidence 0011235667888766654 5777888763111 1 1133455677888886777777778888888 6677666
Q ss_pred EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHH
Q 005254 615 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREE 657 (706)
Q Consensus 615 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 657 (706)
.+..... ...--.|. |+....++.+++||-+++.....
T Consensus 422 si~~~~~----~e~i~gg~-Llg~~ss~~~~fydW~~~~lVrr 459 (794)
T KOG0276|consen 422 SIRPDMS----AEGIFGGP-LLGVRSSDFLCFYDWESGELVRR 459 (794)
T ss_pred ccccccc----eeeecCCc-eEEEEeCCeEEEEEcccceEEEE
Confidence 6643211 11112344 44444566789999877765443
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-39 Score=271.67 Aligned_cols=305 Identities=27% Similarity=0.470 Sum_probs=271.6
Q ss_pred eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
...+.+.+|..+|+.+-|+|+-..++++++|++|++||..++++.+.+++|...+..++|+..|++||+++.|-.+.+||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 45577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 131 VDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 131 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
.++ .+++..+.+|...|.+++|-|.|+. +++++.|.+|+.|+..++.++.++++|...|..+..+.||..+++++.|
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~--ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDH--ILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCe--eeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence 987 5677788899999999999999877 9999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCcceeeecCc-ceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 210 KVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 210 g~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
.+|++|-+.++++...+..+ .++..+.+.|.......
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i------------------------------------------ 294 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI------------------------------------------ 294 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcch------------------------------------------
Confidence 99999999999877776554 45666666555431100
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcE
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 368 (706)
....-..+.+++
T Consensus 295 --------------------------------------------------------------------~~at~~~~~~~~ 306 (406)
T KOG0295|consen 295 --------------------------------------------------------------------SEATGSTNGGQV 306 (406)
T ss_pred --------------------------------------------------------------------hhccCCCCCccE
Confidence 000001125578
Q ss_pred EEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEE
Q 005254 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 448 (706)
+.+++.|+.|++||+.++.++..+.+|...|..++ +.|.|++ ++++.+|+++++||++++++...+..|..-++++.
T Consensus 307 l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a--f~p~Gky-i~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 307 LGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA--FSPGGKY-ILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD 383 (406)
T ss_pred EEeecccceEEEEeccCCeEEEEEecccceeeeeE--EcCCCeE-EEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence 99999999999999999999999999999999998 8888877 99999999999999999999999999999999999
Q ss_pred EecCCCeEEEEecCCCeEEEEEe
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
|..+.. ++++|+-|.++++|..
T Consensus 384 fh~~~p-~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAP-YVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCc-eEEeccccceeeeeec
Confidence 999876 9999999999999964
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.2e-38 Score=298.55 Aligned_cols=246 Identities=30% Similarity=0.517 Sum_probs=220.5
Q ss_pred EEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEE
Q 005254 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457 (706)
Q Consensus 378 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 457 (706)
+...|.........+.+|.++|.... |+|+.+. |+++++|+++|+|.+.+...+..+++|..+|..+.|+|.|- ++
T Consensus 433 ~~~~D~~~~~~~~~L~GH~GPVyg~s--FsPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~Gy-YF 508 (707)
T KOG0263|consen 433 VDMLDDDSSGTSRTLYGHSGPVYGCS--FSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGY-YF 508 (707)
T ss_pred hhhccccCCceeEEeecCCCceeeee--ecccccc-eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCce-EE
Confidence 34445555556667899999999998 8888887 99999999999999999999999999999999999999976 99
Q ss_pred EEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCC
Q 005254 458 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR 537 (706)
Q Consensus 458 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 537 (706)
++++.|++-++|...... +.+.+.+|-+.|.|+.|+|+..|+++|+.|.++++||+.+|..++.|.+|.+
T Consensus 509 atas~D~tArLWs~d~~~----------PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~ 578 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHNK----------PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG 578 (707)
T ss_pred EecCCCceeeeeecccCC----------chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC
Confidence 999999999999987643 7788899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe------
Q 005254 538 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE------ 611 (706)
Q Consensus 538 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------ 611 (706)
+|++++|||+|++|++|+.||.|.+||+.+++++..+.+|.+.|.++.||.||..||+|+.|.+|++||+..-.
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~ 658 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLG 658 (707)
T ss_pred ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986321
Q ss_pred ------------------EEEEeccCCCcEEEEEEcCCCCEEEE
Q 005254 612 ------------------CIATYDKHEDKIWALAVGKKTEMFAT 637 (706)
Q Consensus 612 ------------------~~~~~~~~~~~v~~~~~s~~~~~l~~ 637 (706)
++..+..-..+|..+.|....-.|++
T Consensus 659 ~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~ 702 (707)
T KOG0263|consen 659 HISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAV 702 (707)
T ss_pred ccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEe
Confidence 44555556678888888765544443
No 35
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.8e-36 Score=276.53 Aligned_cols=539 Identities=18% Similarity=0.268 Sum_probs=392.7
Q ss_pred ceEEcCCCC---EEEEeeCC-eEEEEEccCCe--EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe--EE
Q 005254 24 PLVVSSDGS---FIACACGE-SINIVDLSNAS--IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK--CL 95 (706)
Q Consensus 24 ~~~~s~dg~---~l~~~~~~-~i~i~d~~~~~--~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~ 95 (706)
|+.+-|+.+ ++++|..+ .|.+|.++... .+..+.+|... +++++...........|+.+.+||.+..+ +.
T Consensus 59 C~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~--~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~ 136 (764)
T KOG1063|consen 59 CVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKE--CVCVVARSSVMTCKAADGTVSVWDKQQDEVFLL 136 (764)
T ss_pred EEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCccee--EEEEEeeeeEEEeeccCceEEEeecCCCceeee
Confidence 777778777 56666555 89999998443 34566775554 55555444444444689999999996555 33
Q ss_pred EEeecc--CCCeEEEEECCCC-C-EEEEecCCCcEEEEECCCC--eEEEEeeCCCCcEEEEEEcCCCC-ceEEEEEecCC
Q 005254 96 RSWKGH--DGPAIGMACHPSG-G-LLATAGADRKVLVWDVDGG--FCTHYFKGHKGVVSSILFHPDTD-KSLLFSGSDDA 168 (706)
Q Consensus 96 ~~~~~~--~~~v~~~~~s~~~-~-~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg 168 (706)
..+.-. ..-..|+++.|+. . .+|.|+.+..|.++.-... +.+..+.+|...|.+++|...+. ..+|++++.|.
T Consensus 137 ~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~ 216 (764)
T KOG1063|consen 137 AVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDR 216 (764)
T ss_pred hheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCce
Confidence 333322 2233566677733 3 4555677777888775533 45677899999999999987665 78899999999
Q ss_pred eEEEEECCCCe---------------------eEEE----------eecccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 169 TVRVWDLLAKK---------------------CVAT----------LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 169 ~i~vwd~~~~~---------------------~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
.|++|.+.-+. .... +.+|...|.++.|+|.+..|++++.|.++.+|..
T Consensus 217 yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~p 296 (764)
T KOG1063|consen 217 YIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKP 296 (764)
T ss_pred EEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEec
Confidence 99999764221 1111 2489999999999999999999999999999987
Q ss_pred CCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccc
Q 005254 218 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 297 (706)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 297 (706)
.+..-+..-. +..|
T Consensus 297 d~~tGiWv~~----------------------------------------vRlG-------------------------- 310 (764)
T KOG1063|consen 297 DENTGIWVDV----------------------------------------VRLG-------------------------- 310 (764)
T ss_pred CCccceEEEE----------------------------------------EEee--------------------------
Confidence 6542221100 0000
Q ss_pred cccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCc
Q 005254 298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 377 (706)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 377 (706)
+......++....++|+++.+++-+..|..++|... ............+|-..|.++.|.| .+.++++.+.|.+
T Consensus 311 -e~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~----d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQT 384 (764)
T KOG1063|consen 311 -EVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK----DKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQT 384 (764)
T ss_pred -cccccccceeeEEEcCCCCEEEEecccCcEEEEecc----CccceeeccccccccccceeeeecC-CCCEEEEeccccc
Confidence 111334567888899999999999999999999822 2224455567789999999999998 5669999999999
Q ss_pred EEEEeCCC----ceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC-----------------------
Q 005254 378 VQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----------------------- 430 (706)
Q Consensus 378 i~~~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------------------- 430 (706)
-+++-.-. ...+...+-|...+.|++ +.+. +..+++|.+...+|+|+...
T Consensus 385 TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~--~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~g 461 (764)
T KOG1063|consen 385 TRLFARWGRQQEWHEIARPQIHGYDLTCLS--FVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDG 461 (764)
T ss_pred eeeecccccccceeeecccccccccceeee--hccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccc
Confidence 99986652 223444566888899997 5554 44489999999999996321
Q ss_pred --------------------ceE---------------------------------EEEEeCCCcCeEEEEEecCCCeEE
Q 005254 431 --------------------RCC---------------------------------VGVGTGHMGAVGAVAFSKKLQNFL 457 (706)
Q Consensus 431 --------------------~~~---------------------------------~~~~~~~~~~v~~~~~~~~~~~~l 457 (706)
|.. +..+-+|...|.+++.+|+++ ++
T Consensus 462 A~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-li 540 (764)
T KOG1063|consen 462 ANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LI 540 (764)
T ss_pred cccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EE
Confidence 000 011227889999999999987 88
Q ss_pred EEecCC-----CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc----E
Q 005254 458 VSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV----S 528 (706)
Q Consensus 458 ~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~----~ 528 (706)
++++.. ..|++|+...-. ....+..|.-.|+.++|||||++|++.+.|+++.+|...... .
T Consensus 541 ASaCKS~~~ehAvI~lw~t~~W~----------~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 541 ASACKSSLKEHAVIRLWNTANWL----------QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred eehhhhCCccceEEEEEeccchh----------hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh
Confidence 888754 458999876532 455688899999999999999999999999999999875432 2
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC--ceEEE--EeecccCEEEEEEEeC-----CCEEEEEeCC
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG--SCLKT--FEGHTSSVLRASFLTR-----GAQIVSCGAD 599 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~--~~~~~~~i~~~~~s~~-----~~~l~~~~~d 599 (706)
....+.|..-|.+..|+|++.+++|++.|.+|++|..... +.+.. ...+..+|+++++.|- +..++.|-+.
T Consensus 611 fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~ 690 (764)
T KOG1063|consen 611 FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK 690 (764)
T ss_pred hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecc
Confidence 3336779999999999999999999999999999999877 44433 2347789999999872 2367889999
Q ss_pred CCEEEEECCC-------Ce-----EEEEeccCCCcEEEEEEcCC----------CCEEEEEeCCCcEEEEECC
Q 005254 600 GLVKLWTVRT-------GE-----CIATYDKHEDKIWALAVGKK----------TEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 600 g~i~iwd~~~-------~~-----~~~~~~~~~~~v~~~~~s~~----------~~~l~~~~~dg~i~vw~~~ 650 (706)
|.|.+|.... +. .+....+|.+.|+.+.|+|. ...|++|+.|.+++++++.
T Consensus 691 GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 691 GEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 9999998651 11 11122367788999999975 2356999999999999875
No 36
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.2e-39 Score=275.01 Aligned_cols=293 Identities=23% Similarity=0.361 Sum_probs=249.5
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC---eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEE
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL---KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 129 (706)
.+.+..|...|.-+.||++|+|||+++.|.+..||++..- ++.+++.+|..+|..+.||||.+||++++.+..+.+|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 4677889999999999999999999999999999988543 5678899999999999999999999999999999999
Q ss_pred ECCCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeeccc-ceEEEEEEecCCCEEEEEe
Q 005254 130 DVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSMAITSDGSTLISAG 207 (706)
Q Consensus 130 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~ 207 (706)
|+.+|...+.+. ++...+.+++|.|||.. +++|+.|+.+..||+. |+.+...++-. ..|.+++.++||+++++.+
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~--~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFR--FVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCce--eEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 999999887765 34688999999999998 9999999999999984 45455554432 5699999999999999999
Q ss_pred CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEE
Q 005254 208 RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 208 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
.|..+++++..+......+..+.
T Consensus 374 ~d~~i~l~~~e~~~dr~lise~~--------------------------------------------------------- 396 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLISEEQ--------------------------------------------------------- 396 (519)
T ss_pred cccceeeechhhhhhhccccccC---------------------------------------------------------
Confidence 99999999987654433222222
Q ss_pred eeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCc
Q 005254 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367 (706)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 367 (706)
++.+++.+ .+++
T Consensus 397 -------------------------------------------------------------------~its~~iS-~d~k 408 (519)
T KOG0293|consen 397 -------------------------------------------------------------------PITSFSIS-KDGK 408 (519)
T ss_pred -------------------------------------------------------------------ceeEEEEc-CCCc
Confidence 22233322 2556
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
++.+.-.+..+.+||++....+..+.||...-.-+..||-..+..++++|++|+.|+||+..+++++..+.+|...|.++
T Consensus 409 ~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcV 488 (519)
T KOG0293|consen 409 LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCV 488 (519)
T ss_pred EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEE
Confidence 66666677889999999888888999999988888888888887789999999999999999999999999999999999
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecC
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
+|+|..+.++++++.||+|+||....
T Consensus 489 swNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 489 SWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999999999999999999998653
No 37
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.2e-39 Score=300.99 Aligned_cols=277 Identities=28% Similarity=0.472 Sum_probs=243.0
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 432 (706)
...+.+..|++ +..++|.|..+..|++|.+...+.. .++.... + . .+=+.+.|-.+...|.....
T Consensus 378 ~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~~-l-----------~-~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 378 YQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLK-KLKDASD-L-----------S-NIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCcceeEeecC-CcchhhccccccEEEEEecchhhhc-cccchhh-h-----------c-cccccccchhhhhccccCCc
Confidence 34555666654 7779999999999999998865322 2211110 0 0 02234445557777877777
Q ss_pred EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe
Q 005254 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (706)
Q Consensus 433 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (706)
....+.+|.++|..+.|+|+.+ +|++++.|+++++|.+.+.. ......+|..+|..+.|+|.|-++|++
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~s----------~~V~y~GH~~PVwdV~F~P~GyYFata 511 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTWS----------CLVIYKGHLAPVWDVQFAPRGYYFATA 511 (707)
T ss_pred eeEEeecCCCceeeeeeccccc-ceeeccCCcceeeeecccce----------eEEEecCCCcceeeEEecCCceEEEec
Confidence 7788999999999999999976 99999999999999998764 777788999999999999999999999
Q ss_pred eCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCE
Q 005254 513 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592 (706)
Q Consensus 513 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 592 (706)
+.|++-++|......+.+.+.+|...|.|+.|+|+..++++|+.|.++|+||+.+|..++.|.||.++|++++|||+|++
T Consensus 512 s~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred CCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 593 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
|++|+.||.|.+||+.+++++..+.+|.+.|.++.||.||..||++|.|++|++||+......
T Consensus 592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 999999999999999999999999999999999999999999999999999999998766554
No 38
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3e-34 Score=263.70 Aligned_cols=551 Identities=14% Similarity=0.127 Sum_probs=395.3
Q ss_pred eecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe-EEEEeecc-CCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 55 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CLRSWKGH-DGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 55 ~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
.+.--..+|++||||.+.+.||.+-.+|.|.||++..+= +...+.++ +..|.+++|++ +..|.+.+.+|.|.-||+.
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecc
Confidence 334456899999999999999999999999999998753 44455554 57899999995 5578888889999999999
Q ss_pred CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEE--EeecccceEEEEEEecCCCEEEEEeCCC
Q 005254 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA--TLDKHFSRVTSMAITSDGSTLISAGRDK 210 (706)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg 210 (706)
++++...+....+.|++++.+|.++. ++.|++||.+...+...++... .+....+.+.+++|.|++..+++|+.||
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~--l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg 176 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTI--LAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG 176 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccce--EEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc
Confidence 99999999999999999999998876 9999999988888887776554 3455678999999999999999999999
Q ss_pred EEEEEeCCCCcceeee-----cCc----ceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEEC
Q 005254 211 VVNLWDLRDYSCKLTV-----PTY----EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 281 (706)
Q Consensus 211 ~i~~w~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 281 (706)
.|++||...+..+... ... .-+..+.+..++ .+++|+..|+|.+||.
T Consensus 177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~------------------------tI~sgDS~G~V~FWd~ 232 (691)
T KOG2048|consen 177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS------------------------TIASGDSAGTVTFWDS 232 (691)
T ss_pred eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC------------------------cEEEecCCceEEEEcc
Confidence 9999999988776521 111 124555565555 6999999999999999
Q ss_pred CCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeE
Q 005254 282 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF 361 (706)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 361 (706)
..+.+.+.. .-+...+.+++..++++.+++++.|+.+..|...+.... .........|...+.+++.
T Consensus 233 ~~gTLiqS~----------~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---wv~~~~r~~h~hdvrs~av 299 (691)
T KOG2048|consen 233 IFGTLIQSH----------SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---WVINSRRDLHAHDVRSMAV 299 (691)
T ss_pred cCcchhhhh----------hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc---eeeeccccCCcccceeeee
Confidence 988655433 234567899999999999999999999999998876552 4455566678888899998
Q ss_pred eCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc---------e
Q 005254 362 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---------C 432 (706)
Q Consensus 362 ~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~ 432 (706)
.+. .++.++.|..+.+-.....+..........+-.+.. .....+. +..--.+..+.+|.+.+. .
T Consensus 300 ~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v--~~a~~~~-L~~~w~~h~v~lwrlGS~~~~g~~~~~~ 373 (691)
T KOG2048|consen 300 IEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRV--SVAPENR-LLVLWKAHGVDLWRLGSVILQGEYNYIH 373 (691)
T ss_pred ecc---eEEecceeeEEEEccccccCchhhhcccccccccee--ecCccce-EEEEeccccccceeccCcccccccChhh
Confidence 764 888888888888766554222111100000001111 1122222 333333455666765544 1
Q ss_pred EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe
Q 005254 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (706)
Q Consensus 433 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (706)
..+........|.+.+.+|+|+ ++ +-+.=...++|.++... ...................+.|+-|++.++.+
T Consensus 374 Llkl~~k~~~nIs~~aiSPdg~-~I-a~st~~~~~iy~L~~~~-----~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~ 446 (691)
T KOG2048|consen 374 LLKLFTKEKENISCAAISPDGN-LI-AISTVSRTKIYRLQPDP-----NVKVINVDDVPLALLDASAISFTIDKNKLFLV 446 (691)
T ss_pred heeeecCCccceeeeccCCCCC-EE-EEeeccceEEEEeccCc-----ceeEEEeccchhhhccceeeEEEecCceEEEE
Confidence 2233344567899999999998 44 44444568888887532 11111112222233456778888888888877
Q ss_pred e-CCCcEEEEeCCCc--cEEEEEe--ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 513 S-QDRTACVWRLPDL--VSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 513 ~-~dg~i~i~d~~~~--~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
+ ....+.++++.+. +.+..+. +....|..+..||+|++||+.+.+|.|.+|++++.+...........++.++|+
T Consensus 447 s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~ 526 (691)
T KOG2048|consen 447 SKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFS 526 (691)
T ss_pred ecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeecc
Confidence 7 6777888887654 2222222 245679999999999999999999999999998877655443455789999999
Q ss_pred e-CCCEEEEEeCCCCEEEEECCCCeEE-----------EEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 588 T-RGAQIVSCGADGLVKLWTVRTGECI-----------ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 588 ~-~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
| +.+.|+.+..++.+.-||++..+.- ...+.....+..+.|+|..+..+..-..+.+.+.|..-..+.
T Consensus 527 ~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~~~~lp~ 606 (691)
T KOG2048|consen 527 PFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAHWSCLIDFSLPLPS 606 (691)
T ss_pred ccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEcCcEEEEEecCCCCCc
Confidence 4 6678999999999999999432210 111223456888889887766555555667777777655544
Q ss_pred HHH
Q 005254 656 EEA 658 (706)
Q Consensus 656 ~~~ 658 (706)
.+.
T Consensus 607 ~~~ 609 (691)
T KOG2048|consen 607 DED 609 (691)
T ss_pred hhh
Confidence 443
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-36 Score=283.72 Aligned_cols=360 Identities=19% Similarity=0.345 Sum_probs=282.9
Q ss_pred ecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe
Q 005254 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF 135 (706)
Q Consensus 56 l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 135 (706)
++.-+..|..++|+|...++.++-..|.|++||..-+.++..|..|.++|+.++|+|++.++++|++|-.|+||+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEE
Q 005254 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215 (706)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 215 (706)
++.++.+|-.-|..+.|++ .+.++++++.|.+|+||++++++++..+.+|...|.|..|+|...++++++-|.+|++|
T Consensus 85 clftL~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred ehhhhccccceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 9999999999999999999 45679999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcceeeecC--cceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCc
Q 005254 216 DLRDYSCKLTVPT--YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 293 (706)
Q Consensus 216 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 293 (706)
|+...+.....+. .+....... ++ -+.++. +
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~--~~-------------------------dLfg~~--------------------D 195 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQG--NS-------------------------DLFGQT--------------------D 195 (1202)
T ss_pred eecchhccCCCCCCchhhhhcccc--ch-------------------------hhcCCc--------------------C
Confidence 9976554433222 000000000 00 000111 1
Q ss_pred cccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEe
Q 005254 294 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373 (706)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 373 (706)
....+....+.+++.-++|.|.-..++.++.|..+.+|..... .........+|.+.|.++.|.| ..+++++.+
T Consensus 196 aVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet-----KaWEvDtcrgH~nnVssvlfhp-~q~lIlSns 269 (1202)
T KOG0292|consen 196 AVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-----KAWEVDTCRGHYNNVSSVLFHP-HQDLILSNS 269 (1202)
T ss_pred eeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc-----cceeehhhhcccCCcceEEecC-ccceeEecC
Confidence 2223445677889999999999999999999999999998765 3455567889999999999987 778999999
Q ss_pred cCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce----------------EEE--
Q 005254 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC----------------CVG-- 435 (706)
Q Consensus 374 ~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------~~~-- 435 (706)
.|+.|++||+.....+..+....+...+++ ..|..+. +++|. |+-+.+|-++..+ .++
T Consensus 270 EDksirVwDm~kRt~v~tfrrendRFW~la--ahP~lNL-fAAgH-DsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~ 345 (1202)
T KOG0292|consen 270 EDKSIRVWDMTKRTSVQTFRRENDRFWILA--AHPELNL-FAAGH-DSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSY 345 (1202)
T ss_pred CCccEEEEecccccceeeeeccCCeEEEEE--ecCCcce-eeeec-CCceEEEEEcccCceEEEcCCEEEEEccceEEee
Confidence 999999999999999999988888888887 6666553 44444 4444455443211 111
Q ss_pred -----------EEeC---CCcCeEEEEEecCCCeEEEEecC-CCeEEEEEecCC
Q 005254 436 -----------VGTG---HMGAVGAVAFSKKLQNFLVSGSS-DHTIKVWSFDGL 474 (706)
Q Consensus 436 -----------~~~~---~~~~v~~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~ 474 (706)
.++. ...++.++.++|.....+++... ++.-.++.+...
T Consensus 346 d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 346 DLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred eccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCc
Confidence 1111 13567788888876655555443 455556665543
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-39 Score=280.34 Aligned_cols=286 Identities=24% Similarity=0.427 Sum_probs=258.3
Q ss_pred cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 352 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
....|..+.|.| +++.|++++..|.+.+|+..+......++.|..+|.++. +++++.. +++|+.+|.|++|+....
T Consensus 95 vkc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~--ws~~g~w-miSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 95 VKCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMK--WSHNGTW-MISGDKGGMIKYWQPNMN 170 (464)
T ss_pred cccceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEE--EccCCCE-EEEcCCCceEEecccchh
Confidence 345678888887 788999999999999999988888888999999999999 8888888 999999999999998766
Q ss_pred eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE
Q 005254 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (706)
........|...|++++|+|+.. .+++++.||+|+|||....+ ....+.+|+-.|.+++|+|...++++
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~k----------ee~vL~GHgwdVksvdWHP~kgLias 239 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPK----------EERVLRGHGWDVKSVDWHPTKGLIAS 239 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCc----------hhheeccCCCCcceeccCCccceeEE
Confidence 55444455669999999999755 89999999999999998664 55567899999999999999999999
Q ss_pred eeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeC-C
Q 005254 512 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR-G 590 (706)
Q Consensus 512 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~-~ 590 (706)
++.|..|++||.+++.++.++..|+..|..+.|+|++++|++++.|..++++|+++.+.+..+++|...++++.|+|- .
T Consensus 240 gskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNE 319 (464)
T ss_pred ccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994 4
Q ss_pred CEEEEEeCCCCEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 591 AQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 591 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
.++.+|+.||.|..|.+...+++..+. +|...|++++|+|-|.+|++|+.|.++++|.-..+
T Consensus 320 ~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 578899999999999998777776665 89999999999999999999999999999975443
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.3e-38 Score=264.77 Aligned_cols=292 Identities=26% Similarity=0.441 Sum_probs=250.5
Q ss_pred EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 005254 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 131 (706)
..+.+++|.+.|.|+++.|..+++++|+.|++|.|||+.+|++..++.+|-..|..+++|+-..||++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCE
Q 005254 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV 211 (706)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 211 (706)
+..+.+..+.+|-..|.|++.+|.-+. +++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++++.|++
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldv--l~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDV--LVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred hhhhhHHHhccccceeEEEecccccee--EEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 999999999999999999999997665 999999999999999999999999999999999999998889999999999
Q ss_pred EEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeecc
Q 005254 212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 291 (706)
Q Consensus 212 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 291 (706)
|++||++.++...++..
T Consensus 301 vrlWDl~agkt~~tlt~--------------------------------------------------------------- 317 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTH--------------------------------------------------------------- 317 (460)
T ss_pred EEEeeeccCceeEeeec---------------------------------------------------------------
Confidence 99999988775544432
Q ss_pred CccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEE
Q 005254 292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371 (706)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 371 (706)
|...+.+++..| ....+++
T Consensus 318 ------------------------------------------------------------hkksvral~lhP-~e~~fAS 336 (460)
T KOG0285|consen 318 ------------------------------------------------------------HKKSVRALCLHP-KENLFAS 336 (460)
T ss_pred ------------------------------------------------------------ccceeeEEecCC-chhhhhc
Confidence 222333333333 3444555
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe--------CCCcC
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--------GHMGA 443 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~ 443 (706)
++. ..++-|++..+.....+.+|...+.++. ...+ .. +++|+++|.+..||.+++-..+... .....
T Consensus 337 as~-dnik~w~~p~g~f~~nlsgh~~iintl~--~nsD-~v-~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEag 411 (460)
T KOG0285|consen 337 ASP-DNIKQWKLPEGEFLQNLSGHNAIINTLS--VNSD-GV-LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAG 411 (460)
T ss_pred cCC-ccceeccCCccchhhccccccceeeeee--eccC-ce-EEEcCCceEEEEEecCcCcccccccccccCCccccccc
Confidence 544 5688899999999889999999999996 4433 34 8999999999999999987665542 13456
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCC
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 475 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 475 (706)
|.+.+|...+. .|++|..|.+|++|.-+...
T Consensus 412 I~as~fDktg~-rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 412 IFASCFDKTGS-RLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred eeEEeecccCc-eEEeccCCcceEEEeccccc
Confidence 88899999887 89999999999999876543
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-34 Score=272.51 Aligned_cols=543 Identities=17% Similarity=0.224 Sum_probs=378.4
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
.++|+|..-++.++-.+ .|.+||.+=+.++..+..|.++|..++|+|++.++++||+|-.|++|+.++.+++.++.+|-
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl 93 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL 93 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc
Confidence 49999999999998776 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe---
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--- 179 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--- 179 (706)
.-|+.+.|++.-.+++++++|.+|+|||+.+++++..+.+|..-|.|..|+|..+. +++++-|.+|+|||+..-+
T Consensus 94 DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDl--IVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 94 DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDL--IVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccce--EEEecccceEEEEeecchhccC
Confidence 99999999999999999999999999999999999999999999999999997776 9999999999999984210
Q ss_pred --------------------------eEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcce---eeecCcc
Q 005254 180 --------------------------CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK---LTVPTYE 230 (706)
Q Consensus 180 --------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~---~~~~~~~ 230 (706)
..+.+.+|...|+.++|+|.-.++++|+.|..|++|.+...+.- ....+..
T Consensus 172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n 251 (1202)
T KOG0292|consen 172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN 251 (1202)
T ss_pred CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC
Confidence 22456789999999999999999999999999999998765432 2223455
Q ss_pred eeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEE
Q 005254 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAA 310 (706)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (706)
.+.++.|.|... .+++.++|++|++||+....-.... ....+.+..+
T Consensus 252 nVssvlfhp~q~-----------------------lIlSnsEDksirVwDm~kRt~v~tf----------rrendRFW~l 298 (1202)
T KOG0292|consen 252 NVSSVLFHPHQD-----------------------LILSNSEDKSIRVWDMTKRTSVQTF----------RRENDRFWIL 298 (1202)
T ss_pred CcceEEecCccc-----------------------eeEecCCCccEEEEecccccceeee----------eccCCeEEEE
Confidence 677777777554 7899999999999999877443332 1224456777
Q ss_pred EEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeE
Q 005254 311 TVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY 390 (706)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~ 390 (706)
+..|..+.++++ .|+-+.+|.+..++. ..++ .++.++.+- +..|+.+|+.+.+...
T Consensus 299 aahP~lNLfAAg-HDsGm~VFkleRErp-----------------a~~v----~~n~LfYvk--d~~i~~~d~~t~~d~~ 354 (1202)
T KOG0292|consen 299 AAHPELNLFAAG-HDSGMIVFKLERERP-----------------AYAV----NGNGLFYVK--DRFIRSYDLRTQKDTA 354 (1202)
T ss_pred EecCCcceeeee-cCCceEEEEEcccCc-----------------eEEE----cCCEEEEEc--cceEEeeeccccccce
Confidence 777877755554 555566666654321 1111 133333333 6889999998755433
Q ss_pred --eeeCC---cceEEEeeeeeecCCCEEEEEeeCC-CcEEEEeCCCceEEEE---EeCCCcCeEEEEEecCCCeEEEEec
Q 005254 391 --VLAGH---SEIVLCLDTCALSSGKILIVTGSKD-NSVRLWDSESRCCVGV---GTGHMGAVGAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 391 --~~~~~---~~~i~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~ 461 (706)
.++.. ..+..++. +.|..+..+++...+ |...++.+........ -........++-...+ + +.+---
T Consensus 355 v~~lr~~g~~~~~~~sms--YNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarN-r-favl~k 430 (1202)
T KOG0292|consen 355 VASLRRPGTLWQPPRSLS--YNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARN-R-FAVLDK 430 (1202)
T ss_pred eEeccCCCcccCCcceee--eccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEec-c-eEEEEe
Confidence 23322 35666676 778777755554433 3444444332211000 0001112222222222 1 222222
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEE
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 541 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 541 (706)
.+..+.+-++.+.. ...+. ....+..+-+...|.+|+.. ...|.+||+...+.+..++ -..|..
T Consensus 431 ~~~~v~ik~l~N~v-----------tkkl~-~~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~--~s~vky 494 (1202)
T KOG0292|consen 431 SNEQVVIKNLKNKV-----------TKKLL-LPESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIK--VSKVKY 494 (1202)
T ss_pred cCcceEEecccchh-----------hhccc-CcccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEe--cCceeE
Confidence 24445554444321 00000 11234455566667666553 4569999998888877776 467889
Q ss_pred EEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe--EEEEeccC
Q 005254 542 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--CIATYDKH 619 (706)
Q Consensus 542 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~ 619 (706)
+.||+|..+++.-+. .+|.|.+. .-+.+.++. ..-.|.+-+|..+|-+|.+...- |+ |-+.+|. .++++
T Consensus 495 vvws~dm~~vAll~K-h~i~i~~k-kL~l~~sih-Etiriksgawde~gVfiYtT~nH--ik-Yal~~GD~GIikTL--- 565 (1202)
T KOG0292|consen 495 VVWSNDMSRVALLSK-HTITIADK-KLELLCSIH-ETIRIKSGAWDEDGVFIYTTLNH--IK-YALENGDSGIIKTL--- 565 (1202)
T ss_pred EEEcCccchhhhccc-ceEEEEec-chhheecch-heeEeeeceeccCceEEEEehhh--hh-hhhccCCcceEEec---
Confidence 999999988877655 46899885 345555553 23467778898887666655431 22 2233332 33333
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHH
Q 005254 620 EDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 620 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
..++.-.+. .|+.+..-..|+.+....++..+-.-
T Consensus 566 d~~iyitkv--~gn~V~cl~rd~~~~~~~IDptEy~F 600 (1202)
T KOG0292|consen 566 DKPIYITKV--KGNKVFCLNRDGEIECLTIDPTEYRF 600 (1202)
T ss_pred ccceEEEEe--eCCEEEEEecCCCeEEEeechHHHHH
Confidence 224444444 57788888889999999998776543
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.6e-37 Score=251.90 Aligned_cols=289 Identities=22% Similarity=0.389 Sum_probs=259.5
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCC-CceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS-SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
+...+.+|.+.|..+.|.| ++..+++++.|..|.+|+.. .-+....+.+|.+.|..+. +..++.. +++++.|.++
T Consensus 39 p~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~--~~~d~s~-i~S~gtDk~v 114 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELH--GMRDGSH-ILSCGTDKTV 114 (338)
T ss_pred hhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeee--eccCCCE-EEEecCCceE
Confidence 4456778999999999999 99999999999999999955 4455667889999999999 8888888 9999999999
Q ss_pred EEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 424 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 424 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
+.||.++|+.++..+.|..-|.++.-+.-|..++.+++.|+++++||++... .........+++++.|.
T Consensus 115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-----------~~~t~~~kyqltAv~f~ 183 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-----------AIKTFENKYQLTAVGFK 183 (338)
T ss_pred EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-----------hhhccccceeEEEEEec
Confidence 9999999999999999999999999887888899999999999999998653 11222345678999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC----CceEEEEeeccc
Q 005254 504 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD----GSCLKTFEGHTS 579 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~ 579 (706)
.++..+.+|+-|+.|++||++.+.....+.+|.++|+.+..+|+|.++.+-+.|.++++||++. .+++..+.+|..
T Consensus 184 d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~h 263 (338)
T KOG0265|consen 184 DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIH 263 (338)
T ss_pred ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchh
Confidence 9999999999999999999999999999999999999999999999999999999999999864 356788877643
Q ss_pred ----CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 580 ----SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 580 ----~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
....++|+|+++++.+|+.|..+++||......+..+.+|.+.|.+++|+|...+|.+++.|.+|++=.
T Consensus 264 nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 264 NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 456789999999999999999999999999899999999999999999999999999999999998743
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.2e-36 Score=243.54 Aligned_cols=295 Identities=24% Similarity=0.452 Sum_probs=244.3
Q ss_pred EEEeecCCCccEEEEEEccC-CCEEEEEeccCeEEEEECCC---CeEEEEe-eccCCCeEEEEECCCCCEEEEecCCCcE
Q 005254 52 IKSTIEGGSDTITALALSPD-DKLLFSSGHSREIRVWDLST---LKCLRSW-KGHDGPAIGMACHPSGGLLATAGADRKV 126 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~-~~~l~s~~~d~~i~iwd~~~---~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i 126 (706)
.++.+++|.+.+..++|+|- |..||+++.|..|+||+... ..+...+ .+|+..|++++|+|.|++||+++.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45788999999999999998 89999999999999999984 3444444 3699999999999999999999999999
Q ss_pred EEEECCCC--eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC---eeEEEeecccceEEEEEEecCCC
Q 005254 127 LVWDVDGG--FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRVTSMAITSDGS 201 (706)
Q Consensus 127 ~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~ 201 (706)
.||.-..+ +++..+.+|...|.+++|+++|.. ||+++.|..|-||.+..+ ++...++.|...|..+.|+|...
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~--LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNY--LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCE--EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 99997654 678899999999999999998887 999999999999998744 57788999999999999999999
Q ss_pred EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEEC
Q 005254 202 TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 281 (706)
Q Consensus 202 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 281 (706)
+|++++.|++|++|+-...
T Consensus 164 lL~S~SYDnTIk~~~~~~d------------------------------------------------------------- 182 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDD------------------------------------------------------------- 182 (312)
T ss_pred eeEEeccCCeEEEEeecCC-------------------------------------------------------------
Confidence 9999999999999974310
Q ss_pred CCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeE
Q 005254 282 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF 361 (706)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 361 (706)
T Consensus 183 -------------------------------------------------------------------------------- 182 (312)
T KOG0645|consen 183 -------------------------------------------------------------------------------- 182 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCC
Q 005254 362 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM 441 (706)
Q Consensus 362 ~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 441 (706)
....+...+.+|...+.+++ |.+.+.. +++++.|++++||...+. ....|.
T Consensus 183 ----------------------ddW~c~~tl~g~~~TVW~~~--F~~~G~r-l~s~sdD~tv~Iw~~~~~----~~~~~s 233 (312)
T KOG0645|consen 183 ----------------------DDWECVQTLDGHENTVWSLA--FDNIGSR-LVSCSDDGTVSIWRLYTD----LSGMHS 233 (312)
T ss_pred ----------------------CCeeEEEEecCccceEEEEE--ecCCCce-EEEecCCcceEeeeeccC----cchhcc
Confidence 01233446777888888888 8888888 999999999999986532 123477
Q ss_pred cCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC-CCEEEEeeCCCcEEE
Q 005254 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACV 520 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i 520 (706)
..+..++|. ++ .+++++.|+.|++|.-......+. -.........|...|+++++.|. .++|++|+.||.|++
T Consensus 234 r~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~---~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 234 RALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPS---WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred cceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCch---HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence 889999999 43 799999999999998764322111 11122244568889999999994 789999999999999
Q ss_pred EeCC
Q 005254 521 WRLP 524 (706)
Q Consensus 521 ~d~~ 524 (706)
|.+.
T Consensus 308 W~l~ 311 (312)
T KOG0645|consen 308 WELE 311 (312)
T ss_pred EEec
Confidence 9864
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.6e-39 Score=272.06 Aligned_cols=277 Identities=28% Similarity=0.555 Sum_probs=249.3
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 432 (706)
...++++.| ++..+++|..|++|.+||..+..+...+.+|.+.+.|+. +. . .++++|+.|.+|++||.++++
T Consensus 197 skgVYClQY---DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLq--yd--~-rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQ--YD--E-RVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CCceEEEEe---cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeee--cc--c-eEEEecCCCceEEEEeccCCc
Confidence 455677776 778899999999999999999999999999999999997 32 2 359999999999999999999
Q ss_pred EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe
Q 005254 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (706)
Q Consensus 433 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (706)
++.++-.|...|..+.|+.. ++++++.|.++.+||+.... .......+.+|...|+.+.|+ .++++++
T Consensus 269 ~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps-------~it~rrVLvGHrAaVNvVdfd--~kyIVsA 336 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPT-------DITLRRVLVGHRAAVNVVDFD--DKYIVSA 336 (499)
T ss_pred hhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCch-------HHHHHHHHhhhhhheeeeccc--cceEEEe
Confidence 99999999999999999976 89999999999999998653 333566788999999999986 4599999
Q ss_pred eCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCE
Q 005254 513 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592 (706)
Q Consensus 513 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 592 (706)
+.|.+|++|++.+++.+.++.+|...|-|+.+. ++++++|+.|.+|++||+..|.+++.++||..-|.++.| |.+.
T Consensus 337 SgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~kr 412 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKR 412 (499)
T ss_pred cCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCce
Confidence 999999999999999999999999999988875 899999999999999999999999999999999999999 5679
Q ss_pred EEEEeCCCCEEEEECCCCe---------EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 593 IVSCGADGLVKLWTVRTGE---------CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
+++|+.||.|+|||+.++. ++..+..|.+.|..+.| |...+++++.|.+|.+||+..+...
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 9999999999999998764 44556689999999999 7778999999999999999888765
No 46
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.8e-38 Score=272.92 Aligned_cols=284 Identities=25% Similarity=0.423 Sum_probs=247.7
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY 139 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 139 (706)
..+|..+.|.|+|+.|++|+..|.+.+|+..+......+..|..+|+++.|++++.++++|+.+|.|++|+..-.. ++.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHH
Confidence 4589999999999999999999999999986655555667899999999999999999999999999999986544 444
Q ss_pred eeC-CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCC
Q 005254 140 FKG-HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 218 (706)
Q Consensus 140 ~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 218 (706)
+.. |...|.+++|+|+... +++++.||+|+|||....+.-..+.+|.-.|.++.|+|.-.++++++.|..|++||.+
T Consensus 175 ~~ahh~eaIRdlafSpnDsk--F~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSK--FLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred hhHhhhhhhheeccCCCCce--eEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 444 5599999999997766 9999999999999999988888899999999999999999999999999999999887
Q ss_pred CCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcccccc
Q 005254 219 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 298 (706)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 298 (706)
+++++.
T Consensus 253 Sg~cl~-------------------------------------------------------------------------- 258 (464)
T KOG0284|consen 253 SGSCLA-------------------------------------------------------------------------- 258 (464)
T ss_pred Ccchhh--------------------------------------------------------------------------
Confidence 665443
Q ss_pred ccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcE
Q 005254 299 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 378 (706)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 378 (706)
T Consensus 259 -------------------------------------------------------------------------------- 258 (464)
T KOG0284|consen 259 -------------------------------------------------------------------------------- 258 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEE
Q 005254 379 QVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 458 (706)
Q Consensus 379 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 458 (706)
.+.+|...|..+. |.++++. |++++.|..++++|+++.+.+..+++|...+++++|+|-...++.
T Consensus 259 ------------tlh~HKntVl~~~--f~~n~N~-Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 259 ------------TLHGHKNTVLAVK--FNPNGNW-LLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred ------------hhhhccceEEEEE--EcCCCCe-eEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccccee
Confidence 3445666677776 7788855 999999999999999999999999999999999999999888999
Q ss_pred EecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 459 SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 459 ~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
+|+.||.|..|.+....+ ......+|...|.+++++|-|.+|++|+.|.+++.|.-.
T Consensus 324 sgg~Dgsvvh~~v~~~~p---------~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGLEEP---------LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eccCCCceEEEecccccc---------ccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999999999873221 334456799999999999999999999999999999743
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-36 Score=256.20 Aligned_cols=293 Identities=24% Similarity=0.429 Sum_probs=267.5
Q ss_pred eEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 343 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
....+.+.+|.+.|.++++.| .++++++++.|+++.+||+.+++....+.+|...+..++ +++...+ +++++.|+.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~va--vS~rHpY-lFs~gedk~ 216 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVA--VSKRHPY-LFSAGEDKQ 216 (460)
T ss_pred ceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeee--ecccCce-EEEecCCCe
Confidence 345567789999999999988 589999999999999999999999999999999999997 6666665 999999999
Q ss_pred EEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEE
Q 005254 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 502 (706)
|+.||++..+.++.+.+|-+.|.+++..|.-. .|++++.|.++++||++... ....+.+|..+|..+.+
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~----------~V~~l~GH~~~V~~V~~ 285 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRA----------SVHVLSGHTNPVASVMC 285 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccc----------eEEEecCCCCcceeEEe
Confidence 99999999999999999999999999999866 89999999999999998764 77888999999999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEE
Q 005254 503 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL 582 (706)
Q Consensus 503 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 582 (706)
.|-...+++|+.|++|++||+..++-...+..|...|.+++.+|....+|+++.|. |+-|++..+..+..+.+|..-|+
T Consensus 286 ~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iin 364 (460)
T KOG0285|consen 286 QPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIIN 364 (460)
T ss_pred ecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceee
Confidence 99888999999999999999999999999999999999999999999999999987 99999999999999999999999
Q ss_pred EEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec--------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 583 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD--------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
+++...|| ++++|+++|.+..||.++|-..+..+ .....|.+.+|...|..|+||..|.+|.+|+-+..
T Consensus 365 tl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 365 TLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred eeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 99998876 89999999999999999987655542 12457899999999999999999999999986543
No 48
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.1e-36 Score=246.16 Aligned_cols=292 Identities=25% Similarity=0.442 Sum_probs=245.5
Q ss_pred EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC-CCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 94 CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV-DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 94 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
++..+.+|.+.|..+.|+|+|.++|+|+.|..|.+|++ ..-+....+++|.+.|..+.|.+|+.. +++++.|.+|+.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~--i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSH--ILSCGTDKTVRG 116 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCE--EEEecCCceEEE
Confidence 44557889999999999999999999999999999996 445566778899999999999999887 999999999999
Q ss_pred EECCCCeeEEEeecccceEEEEEEecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccc
Q 005254 173 WDLLAKKCVATLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY 251 (706)
Q Consensus 173 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (706)
||+++|+.++.+++|..-+.++.-+.-|. ++.+++.|+++++||+++.+.+++++...+
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyq-------------------- 176 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQ-------------------- 176 (338)
T ss_pred EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccccee--------------------
Confidence 99999999999999999999998665555 555777899999999987665554332111
Q ss_pred cchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEE
Q 005254 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (706)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (706)
T Consensus 177 -------------------------------------------------------------------------------- 176 (338)
T KOG0265|consen 177 -------------------------------------------------------------------------------- 176 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCC
Q 005254 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK 411 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 411 (706)
++++. +...+.
T Consensus 177 -------------------------------------------------------------------ltAv~--f~d~s~ 187 (338)
T KOG0265|consen 177 -------------------------------------------------------------------LTAVG--FKDTSD 187 (338)
T ss_pred -------------------------------------------------------------------EEEEE--eccccc
Confidence 12222 333444
Q ss_pred EEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe
Q 005254 412 ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (706)
. +.+|+-|+.|++||+..+.....+.+|...|+.+..+++|. ++.+-+.|.++++||++..... ..+...+.
T Consensus 188 q-v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~------~R~v~if~ 259 (338)
T KOG0265|consen 188 Q-VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPS------QRCVKIFQ 259 (338)
T ss_pred c-eeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC-ccccccccceEEEEEecccCCC------CceEEEee
Confidence 4 88999999999999999999999999999999999999998 8999999999999999865321 11344444
Q ss_pred ecC----cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 492 AHG----KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 492 ~~~----~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
+|. ......+|+|++..+.+|+.|+.+++||......+..+++|.+.|.+++|+|...+|.+++.|.+|++=.
T Consensus 260 g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 260 GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 332 3456678999999999999999999999999999999999999999999999999999999999988743
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.5e-38 Score=275.86 Aligned_cols=294 Identities=22% Similarity=0.432 Sum_probs=248.6
Q ss_pred eEEEeecCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCC-CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEE
Q 005254 51 SIKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLST-LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV 128 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 128 (706)
+.++.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|..++|+++|..+.+++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45688999999999999999 889999999999999999976 8999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC
Q 005254 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 129 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 208 (706)
||+++|+++..+. ....+.|+.|+|++ .+.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+++++.+.
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 9999999999887 66788999999997 567999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 209 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
|+.+++|+.+....+..+....
T Consensus 363 dks~riWe~~~~v~ik~i~~~~---------------------------------------------------------- 384 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPE---------------------------------------------------------- 384 (503)
T ss_pred CccEEEEEcCCCccchhhcchh----------------------------------------------------------
Confidence 9999999987655443322111
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcE
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 368 (706)
.....++...| ++.+
T Consensus 385 ---------------~hsmP~~~~~P--------------------------------------------------~~~~ 399 (503)
T KOG0282|consen 385 ---------------MHTMPCLTLHP--------------------------------------------------NGKW 399 (503)
T ss_pred ---------------hccCcceecCC--------------------------------------------------CCCe
Confidence 01112222333 4445
Q ss_pred EEEEecCCcEEEEeCCCc---eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeE
Q 005254 369 LAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG 445 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 445 (706)
++.-+.++.+.++.+... .....+.+|...=.++.+.|+|++.. |++|..||.+.+||.++-+.+..++.|...+.
T Consensus 400 ~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci 478 (503)
T KOG0282|consen 400 FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI 478 (503)
T ss_pred ehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechhhhhhhccccCCcceE
Confidence 555555555555554322 22345677776666666669999998 99999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEecCCCeEEEEE
Q 005254 446 AVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
.+.|+|.....+++++.||.|++|+
T Consensus 479 ~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 479 GVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEecCCCcceeEecccCceeEecC
Confidence 9999999888999999999999996
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.5e-35 Score=237.59 Aligned_cols=279 Identities=24% Similarity=0.395 Sum_probs=219.8
Q ss_pred ceEEcCC-CCEEEEeeCC-eEEEEEccCC---eEEEee-cCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC--eEE
Q 005254 24 PLVVSSD-GSFIACACGE-SINIVDLSNA---SIKSTI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL--KCL 95 (706)
Q Consensus 24 ~~~~s~d-g~~l~~~~~~-~i~i~d~~~~---~~~~~l-~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~ 95 (706)
.+|++|- |..||+++.+ .|+||+...+ .....+ .+|...|.++||+|.|++||+|+-|.++.||.-..+ +++
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv 98 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECV 98 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEE
Confidence 5999999 8989988887 8999998743 344444 479999999999999999999999999999987644 789
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC---eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG---FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
..+.||...|.+++||++|.|||+++.|.+|.||.+..+ ++...+..|...|..+.|+|..+. |++++.|++|++
T Consensus 99 ~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl--L~S~SYDnTIk~ 176 (312)
T KOG0645|consen 99 ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL--LFSCSYDNTIKV 176 (312)
T ss_pred eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce--eEEeccCCeEEE
Confidence 999999999999999999999999999999999999754 567788999999999999997664 999999999999
Q ss_pred EECC---CCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccc
Q 005254 173 WDLL---AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLS 249 (706)
Q Consensus 173 wd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (706)
|+-. .-.+++++.+|...|.+++|.+.|..|++++.|+++++|.....- .......+..+.+. ++
T Consensus 177 ~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~-~~-------- 244 (312)
T KOG0645|consen 177 YRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALYDVPWD-NG-------- 244 (312)
T ss_pred EeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---chhcccceEeeeec-cc--------
Confidence 9765 346889999999999999999999999999999999999864211 00111122222222 11
Q ss_pred cccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceE
Q 005254 250 SYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLL 329 (706)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 329 (706)
.+++++.|+.|+++.
T Consensus 245 ----------------~IaS~ggD~~i~lf~------------------------------------------------- 259 (312)
T KOG0645|consen 245 ----------------VIASGGGDDAIRLFK------------------------------------------------- 259 (312)
T ss_pred ----------------ceEeccCCCEEEEEE-------------------------------------------------
Confidence 355555555555543
Q ss_pred EEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCC
Q 005254 330 LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 384 (706)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~ 384 (706)
....+....-....+....|...|.++.|.|...++|++++.||.+++|.+.
T Consensus 260 ---~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 260 ---ESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ---ecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 3322222211222234456777999999999889999999999999999864
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-35 Score=235.33 Aligned_cols=286 Identities=21% Similarity=0.379 Sum_probs=247.5
Q ss_pred EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 005254 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 131 (706)
..+.+++|+++|.++.|+-||+|.++++.|.+|++|+...|.+++++.+|...|..++.+.|+..+++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC--CeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA--KKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
.+|+....+.+|.+.|+.++|+.+.. ++++|+.|..+++||-++ .++++.+......|.++..+ +..++.|+.|
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~D 164 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVD 164 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccC
Confidence 99999999999999999999998655 599999999999999875 46788887778889888875 4579999999
Q ss_pred CEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEee
Q 005254 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 289 (706)
Q Consensus 210 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 289 (706)
|+++.||++.+.....
T Consensus 165 GtvRtydiR~G~l~sD---------------------------------------------------------------- 180 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSD---------------------------------------------------------------- 180 (307)
T ss_pred CcEEEEEeecceeehh----------------------------------------------------------------
Confidence 9999999886653211
Q ss_pred ccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEE
Q 005254 290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 369 (706)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 369 (706)
....+|.+++|++ +++..
T Consensus 181 -------------------------------------------------------------y~g~pit~vs~s~-d~nc~ 198 (307)
T KOG0316|consen 181 -------------------------------------------------------------YFGHPITSVSFSK-DGNCS 198 (307)
T ss_pred -------------------------------------------------------------hcCCcceeEEecC-CCCEE
Confidence 1234566666665 66777
Q ss_pred EEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcC-eEEEE
Q 005254 370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA-VGAVA 448 (706)
Q Consensus 370 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~ 448 (706)
.+++.++.+++.|-.+++.+..+.+|...-.-+++|+...... +++|++||.+.+||+.....+..+..+... +..++
T Consensus 199 La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth-V~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~ 277 (307)
T KOG0316|consen 199 LASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH-VFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLS 277 (307)
T ss_pred EEeeccceeeecccchhHHHHHhcccccceeeeeeeeccccee-EEeccCCceEEEEEeccceeeeeeccCCceeEEeee
Confidence 7888889999999999999999999999999999888877777 999999999999999999999999888877 89999
Q ss_pred EecCCCeEEEEecCCCeEEEEE
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
++|.-..++.+++ +.+.+|.
T Consensus 278 ~hp~~~~f~~A~~--~~~~~~~ 297 (307)
T KOG0316|consen 278 CHPTMDDFITATG--HGDLFWY 297 (307)
T ss_pred cccCccceeEecC--Cceecee
Confidence 9998764444332 3345554
No 52
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.8e-31 Score=243.49 Aligned_cols=531 Identities=18% Similarity=0.202 Sum_probs=371.5
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCe-EEEeecCC-CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNAS-IKSTIEGG-SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~-~~~~l~~~-~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
+||+|.+.+.||.+-.+ .|.||++..+- +...+.|+ ...|.+++|++ +..|.+.+.+|.|.-||+.+++++..+..
T Consensus 30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~ 108 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDS 108 (691)
T ss_pred EEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecC
Confidence 89999999999988765 99999998765 34566666 45899999995 45678888999999999999999999999
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE--eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY--FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
..+.|.+++.+|.+..++.|++||.+..++...++.... +...+++|.++.|+|++.. +++|+.||.|++||..++
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~--i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK--IAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE--EEecccCceEEEEEcCCC
Confidence 999999999999999999999999888888887776543 4446789999999999887 999999999999999998
Q ss_pred eeEEEee--------cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC-cceeeeEEeeCCCCCcccccc
Q 005254 179 KCVATLD--------KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT-YEMVEAVCAIPPGSAFDSFLS 249 (706)
Q Consensus 179 ~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 249 (706)
..+.... ....-|+++.|..++ .|++|...|.|.+||...+..++.... ...+.+++..+++.
T Consensus 187 ~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d------- 258 (691)
T KOG2048|consen 187 QTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED------- 258 (691)
T ss_pred ceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC-------
Confidence 8776221 134468888888665 799999999999999999988877765 44577777776655
Q ss_pred cccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceE
Q 005254 250 SYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLL 329 (706)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 329 (706)
.++++|.|+.+..+...+..-. .......+.+...+.+++..++ .++.+..|..+.
T Consensus 259 ----------------~vfsaGvd~~ii~~~~~~~~~~------wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~ 314 (691)
T KOG2048|consen 259 ----------------RVFSAGVDPKIIQYSLTTNKSE------WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLA 314 (691)
T ss_pred ----------------eEEEccCCCceEEEEecCCccc------eeeeccccCCcccceeeeeecc--eEEecceeeEEE
Confidence 7899999999998887766321 1122334556777888888777 777788888877
Q ss_pred EEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCcee---------eEeeeCCcceEE
Q 005254 330 LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC---------SYVLAGHSEIVL 400 (706)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~---------~~~~~~~~~~i~ 400 (706)
+-.....+..... . +...+..........+++..--....+.+|.+.+... .+........+.
T Consensus 315 i~~s~~~~~~~h~---~-----~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs 386 (691)
T KOG2048|consen 315 ICSSREFKNMDHR---Q-----KNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENIS 386 (691)
T ss_pred EccccccCchhhh---c-----cccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCcccee
Confidence 7655542211110 0 0000001111111333444444445666676655411 122223344566
Q ss_pred EeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE-----EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCC
Q 005254 401 CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-----GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 475 (706)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 475 (706)
|.+ .+|+++. ++.+. =..+++|.+.....+.. .....-....+.|+-++..++++.-....+..+++....
T Consensus 387 ~~a--iSPdg~~-Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps 462 (691)
T KOG2048|consen 387 CAA--ISPDGNL-IAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPS 462 (691)
T ss_pred eec--cCCCCCE-EEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcc
Confidence 666 7888887 44443 23466666554222221 223344667788888877444444477788888877653
Q ss_pred CCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEcc-CCCEEEEe
Q 005254 476 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITA 554 (706)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~ 554 (706)
...... .........|..+..+|+|+++|+.+..|.|.+|++++.+...........|++++|+| +.+.|+.+
T Consensus 463 ~kel~~------~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvva 536 (691)
T KOG2048|consen 463 FKELKS------IQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVA 536 (691)
T ss_pred hhhhhc------cccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEE
Confidence 221111 11114567799999999999999999999999999998876665545568899999995 66789999
Q ss_pred cCCCcEEEEEcCCCce-----------EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 555 SGDKTIKIWSISDGSC-----------LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 555 ~~dg~i~iwd~~~~~~-----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
..++++.-||++..+. -.....-...+..+.|.|.....+..-..+-+.+.|.
T Consensus 537 ts~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~ 600 (691)
T KOG2048|consen 537 TSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAHWSCLIDF 600 (691)
T ss_pred ecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEcCcEEEEEec
Confidence 9999999999943321 1111223356777888876554444444455666654
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9e-35 Score=283.23 Aligned_cols=293 Identities=32% Similarity=0.569 Sum_probs=249.8
Q ss_pred EeecCC-CccEEEEEEccCCCEEEEEeccCeEEEEECCCCe--EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 54 STIEGG-SDTITALALSPDDKLLFSSGHSREIRVWDLSTLK--CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 54 ~~l~~~-~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
..+.+| ...|+++.|+++|+++++++.++.+++|+..+++ ..+.+.+|...|..++|+||++++++++.|++|++||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 444444 7899999999999999999999999999998888 7888889999999999999999999999999999999
Q ss_pred C-CCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 131 V-DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 131 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
+ +.+..++.+.+|...|++++|+|+++ ++++|+.|++|++||+++++++..+.+|.+.|.+++|++++++|++++.|
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9 66689999999999999999999985 49999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCcce--eeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEE
Q 005254 210 KVVNLWDLRDYSCK--LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 210 g~i~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
+.|++||+.++... ..+....
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~--------------------------------------------------------- 332 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAE--------------------------------------------------------- 332 (456)
T ss_pred ccEEEEECCCCceeeeecccCCC---------------------------------------------------------
Confidence 99999999887632 2211100
Q ss_pred eeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCc
Q 005254 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367 (706)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 367 (706)
... .+..+.|.| ++.
T Consensus 333 ---------------------------------------------------------------~~~-~~~~~~fsp-~~~ 347 (456)
T KOG0266|consen 333 ---------------------------------------------------------------NSA-PVTSVQFSP-NGK 347 (456)
T ss_pred ---------------------------------------------------------------CCC-ceeEEEECC-CCc
Confidence 011 345555554 777
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeee-ecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC-CcCeE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA-LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVG 445 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~ 445 (706)
+++++..++.+++||+..+.....+.+|...+.|+.... .+.+.. +++|+.|+.|.+||..++..+..+.+| ...+.
T Consensus 348 ~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~ 426 (456)
T KOG0266|consen 348 YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL-IYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVS 426 (456)
T ss_pred EEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe-EEEEeCCceEEEEeCCccchhhhhcCCCCCcee
Confidence 888888888888899888888888888887655553323 344554 999999999999999999999999999 89999
Q ss_pred EEEEecCCCeEEEEec--CCCeEEEEEec
Q 005254 446 AVAFSKKLQNFLVSGS--SDHTIKVWSFD 472 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~--~d~~i~i~~~~ 472 (706)
.+.+++... ++++++ .|+.+++|..+
T Consensus 427 ~~~~~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 427 DLSSHPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccccCCCcC-eeeecCcCCCceEEEecCC
Confidence 999999976 788887 78999999754
No 54
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-36 Score=252.45 Aligned_cols=287 Identities=23% Similarity=0.331 Sum_probs=240.2
Q ss_pred CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee--------ccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK--------GHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
...-+.|..|||||+||++|+.||.|.+||..+|++...++ -+..+|.|+.||.|...||+|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 45567899999999999999999999999999998766543 3778999999999999999999999999999
Q ss_pred CCCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 131 VDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 131 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
+.+|.++..|. .|...|+|+.|+.|+.. +++++.|.++++.-+.+|++++.+++|.+.|+...|++||.++++++.|
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~Sq--iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQ--ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcch--hhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 99999999987 89999999999999888 9999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEee
Q 005254 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 289 (706)
Q Consensus 210 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 289 (706)
|+|++|+.++.+++.++....
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~----------------------------------------------------------- 390 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLG----------------------------------------------------------- 390 (508)
T ss_pred ccEEEecCcchhhhhhccCCC-----------------------------------------------------------
Confidence 999999999988877654321
Q ss_pred ccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEE
Q 005254 290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 369 (706)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 369 (706)
..-++..+...|.+...+
T Consensus 391 --------------------------------------------------------------~d~~vnsv~~~PKnpeh~ 408 (508)
T KOG0275|consen 391 --------------------------------------------------------------TDYPVNSVILLPKNPEHF 408 (508)
T ss_pred --------------------------------------------------------------CcccceeEEEcCCCCceE
Confidence 112333444455566677
Q ss_pred EEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEE
Q 005254 370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 449 (706)
Q Consensus 370 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 449 (706)
+++...+++++.++...-....-.+....-.-+..+.+|.+.+ +.+.+.|+.++.|...+|+....+.-|...+-.++-
T Consensus 409 iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~H 487 (508)
T KOG0275|consen 409 IVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTH 487 (508)
T ss_pred EEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCceeeeeeccccccccccc
Confidence 7777777777777654333222222222212222338899998 899999999999999999999999999999999999
Q ss_pred ecCCCeEEEEecCCCeEEEEE
Q 005254 450 SKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 450 ~~~~~~~l~~~~~d~~i~i~~ 470 (706)
+|.. +++++-+.||.+++|.
T Consensus 488 HPHq-NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 488 HPHQ-NLLASYSEDGLLKLWK 507 (508)
T ss_pred Cccc-chhhhhcccchhhhcC
Confidence 9984 4999999999999994
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.5e-34 Score=268.56 Aligned_cols=286 Identities=33% Similarity=0.569 Sum_probs=258.0
Q ss_pred EecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
.+.+|..++.++++.+ +++++++++.+|.+.+|++.+......+..|...+..+. +.++++. +++++.+|.+++|+
T Consensus 4 ~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~-l~~~~~~~~i~i~~ 79 (289)
T cd00200 4 TLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA--ASADGTY-LASGSSDKTIRLWD 79 (289)
T ss_pred HhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEE--ECCCCCE-EEEEcCCCeEEEEE
Confidence 3457888999999987 578899999999999999999888888888988887777 7777766 88999999999999
Q ss_pred CCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCC
Q 005254 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 507 (706)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 507 (706)
..+++.+..+..|...+.++.|++++. ++++++.++.+.+|++.... ....+..|...+.+++++|++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGK----------CLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcE----------EEEEeccCCCcEEEEEEcCcCC
Confidence 999888888888999999999999965 78888889999999997432 4444557888999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 508 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 508 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
++++++.++.|++||+.+++....+..|...+.+++|+|+++.+++++.|+.|++||+.+++.+..+..|...+.++.|+
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228 (289)
T ss_pred EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc
Confidence 99998889999999999999999999999999999999999999999999999999999999999887899999999999
Q ss_pred eCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 588 TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 588 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
|++.++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.+++|+
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9988888888899999999999999999999999999999999999999999999999996
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.2e-33 Score=267.50 Aligned_cols=287 Identities=36% Similarity=0.660 Sum_probs=246.9
Q ss_pred EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 005254 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG 133 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 133 (706)
..+++|..+|++++|+|++++|++++.+|.|.+|++.+++....+..|...+..+.|+|+++++++++.++.|++|++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46778999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEE
Q 005254 134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213 (706)
Q Consensus 134 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 213 (706)
++.+..+..|...+.++.|+|++. ++++++.+|.|.+||+.+++....+..|...+.+++|+|++.++++++.++.|+
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 888888899999999999999854 477777799999999999999988988999999999999988888888799999
Q ss_pred EEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCc
Q 005254 214 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 293 (706)
Q Consensus 214 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 293 (706)
+||+++++...
T Consensus 161 i~d~~~~~~~~--------------------------------------------------------------------- 171 (289)
T cd00200 161 LWDLRTGKCVA--------------------------------------------------------------------- 171 (289)
T ss_pred EEEccccccce---------------------------------------------------------------------
Confidence 99976432211
Q ss_pred cccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEe
Q 005254 294 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373 (706)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 373 (706)
T Consensus 172 -------------------------------------------------------------------------------- 171 (289)
T cd00200 172 -------------------------------------------------------------------------------- 171 (289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC
Q 005254 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 374 ~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (706)
.+..|...+.++. +.++++. +++++.++.+++||..+++.+..+..|...+.++.|+|++
T Consensus 172 -----------------~~~~~~~~i~~~~--~~~~~~~-l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 231 (289)
T cd00200 172 -----------------TLTGHTGEVNSVA--FSPDGEK-LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231 (289)
T ss_pred -----------------eEecCccccceEE--ECCCcCE-EEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC
Confidence 1122334455555 6677666 7777779999999999988888887888999999999995
Q ss_pred CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 005254 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522 (706)
Q Consensus 454 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 522 (706)
. ++++++.++.+++|++.... ....+..|...+.+++|+|+++++++++.||.+++|+
T Consensus 232 ~-~~~~~~~~~~i~i~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 232 Y-LLASGSEDGTIRVWDLRTGE----------CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred c-EEEEEcCCCcEEEEEcCCce----------eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 4 77788789999999987542 4444557888999999999999999999999999996
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-34 Score=228.53 Aligned_cols=284 Identities=19% Similarity=0.275 Sum_probs=249.3
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEE
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~ 426 (706)
+.+..+.+.|..+.|.. ++++.++++.+.++++|+...+.+++.+.+|...|..++ ...++.. +++++.|..+.+|
T Consensus 11 ~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~--~s~Dnsk-f~s~GgDk~v~vw 86 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAA--LSSDNSK-FASCGGDKAVQVW 86 (307)
T ss_pred eeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeecc--ccccccc-cccCCCCceEEEE
Confidence 45567788899999876 889999999999999999999999999999999999988 6677777 9999999999999
Q ss_pred eCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 427 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 427 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
|.++|+.++.+.+|.+.|..+.|+.+.. .+++|+.|.++++||.+.... ++...+......|.++.++ +
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~--------ePiQildea~D~V~Si~v~--~ 155 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSF--------EPIQILDEAKDGVSSIDVA--E 155 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCC--------CccchhhhhcCceeEEEec--c
Confidence 9999999999999999999999999976 999999999999999987643 3455566666778888875 6
Q ss_pred CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCE--EEE
Q 005254 507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV--LRA 584 (706)
Q Consensus 507 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i--~~~ 584 (706)
..+++|+.||+++.||++.+......- ..+|+++.|++|++..+.++-|+++++.|-.+|++++.+.+|...- ..+
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 689999999999999999998876655 4579999999999999999999999999999999999999998643 445
Q ss_pred EEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCc-EEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK-IWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 585 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+++.....+++|++||.|++||+.+...+..+..|... |.++.+.|....+++++.. .+..|.
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceecee
Confidence 77777889999999999999999999999999988887 8999999998888877644 455664
No 58
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.4e-34 Score=279.19 Aligned_cols=283 Identities=27% Similarity=0.480 Sum_probs=257.1
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce--eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeC-C
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS-E 429 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~-~ 429 (706)
...+.++.|++ ++..++.++.++.+++|+..... ....+.+|...|..+. +++++.. +++++.|+++++||+ .
T Consensus 159 ~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~--fs~d~~~-l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 159 CPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVA--FSPDGSY-LLSGSDDKTLRIWDLKD 234 (456)
T ss_pred cCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeE--ECCCCcE-EEEecCCceEEEeeccC
Confidence 56777788887 66669999999999999998777 6777789999999998 8899886 999999999999999 5
Q ss_pred CceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEE
Q 005254 430 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 509 (706)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 509 (706)
.+..++.+.+|...|++++|+|++ +++++|+.|++|++||++.++ ....+.+|...|++++|++++++|
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~----------~~~~l~~hs~~is~~~f~~d~~~l 303 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGE----------CVRKLKGHSDGISGLAFSPDGNLL 303 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCe----------EEEeeeccCCceEEEEECCCCCEE
Confidence 668999999999999999999999 599999999999999999754 888899999999999999999999
Q ss_pred EEeeCCCcEEEEeCCCcc--EEEEEeecCCc--EEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccC---EE
Q 005254 510 CTGSQDRTACVWRLPDLV--SVVTFRGHKRG--IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS---VL 582 (706)
Q Consensus 510 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---i~ 582 (706)
++++.|+.|++||+.++. ....+..+... ++++.|+|++.+++++..|+.+++||+..+.+...+.+|... +.
T Consensus 304 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 304 VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIF 383 (456)
T ss_pred EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEe
Confidence 999999999999999998 55677766655 999999999999999999999999999999999999998875 44
Q ss_pred EEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccC-CCcEEEEEEcCCCCEEEEEe--CCCcEEEEECC
Q 005254 583 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-EDKIWALAVGKKTEMFATGG--SDALVNLWHDS 650 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~--~dg~i~vw~~~ 650 (706)
+..+++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+.++|..+++++++ .|+.+++|..+
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 4455788999999999999999999999999999999 89999999999999999988 79999999864
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.9e-33 Score=295.34 Aligned_cols=237 Identities=19% Similarity=0.257 Sum_probs=199.9
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCC
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 478 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 478 (706)
+.++. +.+....++++++.||.|++||+.+++.+..+..|...|.+++|+|....+|++++.|+.|++||+....
T Consensus 535 v~~l~--~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--- 609 (793)
T PLN00181 535 LSGIC--WNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--- 609 (793)
T ss_pred eeeEE--eccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc---
Confidence 44444 5554444599999999999999999999999999999999999997544489999999999999997643
Q ss_pred CcccccceeEEEeecCcceEEEEEc-CCCCEEEEeeCCCcEEEEeCCCcc-EEEEEeecCCcEEEEEEccCCCEEEEecC
Q 005254 479 EQPMNLKAKAVVAAHGKDINSLAVA-PNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSVEFSPVDQVVITASG 556 (706)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 556 (706)
....+. +...+.++.|+ +++.++++|+.||.|++||+.+.. .+..+.+|...|.++.|. ++.+|++++.
T Consensus 610 -------~~~~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~ 680 (793)
T PLN00181 610 -------SIGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST 680 (793)
T ss_pred -------EEEEEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC
Confidence 223333 34578899995 579999999999999999998765 567788999999999997 6889999999
Q ss_pred CCcEEEEEcCC------CceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEe-------------c
Q 005254 557 DKTIKIWSISD------GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-------------D 617 (706)
Q Consensus 557 dg~i~iwd~~~------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~ 617 (706)
|++|++||+.. ..++..+.+|...+..+.|++++.+|++|+.|+.|++|+.....++..+ .
T Consensus 681 D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~ 760 (793)
T PLN00181 681 DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVD 760 (793)
T ss_pred CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccC
Confidence 99999999974 3578889999999999999999999999999999999998766544322 2
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 618 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
.|...|.+++|+|++..|++|+.||.|++|++
T Consensus 761 ~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 761 DASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 34567999999999999999999999999986
No 60
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=249.72 Aligned_cols=280 Identities=22% Similarity=0.371 Sum_probs=235.7
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCC---eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNA---SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK 99 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~---~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 99 (706)
-+.||++|++||+++.+ +..||.+..- +..+++.+|..+|..+.||||.++|++|+.+..+.+||+.+|.+.+.+.
T Consensus 229 fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~ 308 (519)
T KOG0293|consen 229 FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP 308 (519)
T ss_pred EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc
Confidence 68999999999999998 6777876433 4578999999999999999999999999999999999999999988876
Q ss_pred c-cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeC-CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC
Q 005254 100 G-HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG-HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 177 (706)
Q Consensus 100 ~-~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 177 (706)
. |...+.+++|.|||..+++|+.|+++..||++... +...++ ....|.+++.++||+. +++.+.|..|++++.++
T Consensus 309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~--vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKY--VLLVTVDKKIRLYNREA 385 (519)
T ss_pred cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcE--EEEEecccceeeechhh
Confidence 3 46889999999999999999999999999987543 444444 3467999999999987 77778999999999987
Q ss_pred CeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhh
Q 005254 178 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK 257 (706)
Q Consensus 178 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (706)
........ ...+|++++.|.+++++++.-.+..+.+||++....++....+..
T Consensus 386 ~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq-------------------------- 438 (519)
T KOG0293|consen 386 RVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ-------------------------- 438 (519)
T ss_pred hhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc--------------------------
Confidence 76655443 447899999999999999999999999999987665554432211
Q ss_pred ccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecc
Q 005254 258 KKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337 (706)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 337 (706)
T Consensus 439 -------------------------------------------------------------------------------- 438 (519)
T KOG0293|consen 439 -------------------------------------------------------------------------------- 438 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEe
Q 005254 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 417 (706)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 417 (706)
..-+..-+|-..+..++++|+.|+.|++|+..+++.+..+.||...+.|++ +.|.+..++|++
T Consensus 439 ---------------~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs--wNP~~p~m~ASa 501 (519)
T KOG0293|consen 439 ---------------GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS--WNPADPEMFASA 501 (519)
T ss_pred ---------------cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe--cCCCCHHHhhcc
Confidence 011223344445778999999999999999999999999999999999999 889999999999
Q ss_pred eCCCcEEEEeCCC
Q 005254 418 SKDNSVRLWDSES 430 (706)
Q Consensus 418 ~~dg~i~i~d~~~ 430 (706)
++||+|+||-...
T Consensus 502 sDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 502 SDDGTIRIWGPSD 514 (519)
T ss_pred CCCCeEEEecCCc
Confidence 9999999997653
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.2e-35 Score=235.82 Aligned_cols=293 Identities=19% Similarity=0.306 Sum_probs=259.8
Q ss_pred eEecccCceeeEeeEeC--CCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 347 KRLVGYNEEILDLKFLG--EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~--~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
....+|..+|.+++|+| +++-+|++++.|+.-.+-+-+++.-+-.+.+|.+.|.... ...+ ....++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~--l~~n-a~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSAT--LNKN-ATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeee--cCch-hhhhhhhcccchhh
Confidence 45668999999999987 7888999999999999999999999999999999998774 3333 33378899999999
Q ss_pred EEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 425 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
+||.-+|..+..+. |..-|.+++|+.|.. +|++|+.+.-+++||++..+. +...+.+|...|..+.|..
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~A---------pp~E~~ghtg~Ir~v~wc~ 153 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKA---------PPKEISGHTGGIRTVLWCH 153 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEecccch-hhhccchHHHhhhhhccCCCC---------CchhhcCCCCcceeEEEec
Confidence 99999998888765 888999999999976 899999999999999987543 3445678999999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEE
Q 005254 505 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 584 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 584 (706)
..+.+++.+.|++|++||.+++..+..+. .+.+|+++..+++|++|.++. .+.|.+||..+..+++.+. -...|.+.
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV~SA 230 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNVESA 230 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-Cccccccc
Confidence 99999999999999999999999999988 577899999999999877764 4569999999999998887 45678999
Q ss_pred EEEeCCCEEEEEeCCCCEEEEECCCCeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHH
Q 005254 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 585 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
.++|+...+++|++|..++.||..+|+.+..+ ++|.++|.|+.|+|||..-++|++||+|++|....++.-.
T Consensus 231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred cccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchh
Confidence 99999999999999999999999999999986 7999999999999999999999999999999998877553
No 62
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.5e-35 Score=249.47 Aligned_cols=287 Identities=25% Similarity=0.479 Sum_probs=242.3
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 180 (706)
....|.|+.+. ...+++|..|++|+|||..+..++..+.+|++.|.|+.|.. .++++|+.|.+|++||++++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~----rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE----RVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc----eEEEecCCCceEEEEeccCCch
Confidence 45688998886 55699999999999999999999999999999999999953 3699999999999999999999
Q ss_pred EEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccc
Q 005254 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 260 (706)
Q Consensus 181 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (706)
+.++-+|...|..+.|+. .++++++.|.++.+||+.....+.
T Consensus 270 l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it------------------------------------ 311 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDIT------------------------------------ 311 (499)
T ss_pred hhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHH------------------------------------
Confidence 999999999999999974 489999999999999987543111
Q ss_pred cccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccc
Q 005254 261 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK 340 (706)
Q Consensus 261 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 340 (706)
T Consensus 312 -------------------------------------------------------------------------------- 311 (499)
T KOG0281|consen 312 -------------------------------------------------------------------------------- 311 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC
Q 005254 341 MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD 420 (706)
Q Consensus 341 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d 420 (706)
..+.+.+|...+..+.| +++++++++.|.++++|++.+.+.+..+.+|...|.|+. . ...++++|+.|
T Consensus 312 ----~rrVLvGHrAaVNvVdf---d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ----Y-r~rlvVSGSSD 379 (499)
T KOG0281|consen 312 ----LRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ----Y-RDRLVVSGSSD 379 (499)
T ss_pred ----HHHHHhhhhhheeeecc---ccceEEEecCCceEEEEeccceeeehhhhcccccceehh----c-cCeEEEecCCC
Confidence 11334556666666666 556999999999999999999999999999999999876 2 34459999999
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEE
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 500 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 500 (706)
.+|++||+..|.+++.+++|..-|.++.|... .+++|+.||+|++||+....... .+....+......|.+.|..+
T Consensus 380 ntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpr-a~~~~~Cl~~lv~hsgRVFrL 455 (499)
T KOG0281|consen 380 NTIRLWDIECGACLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPR-APASTLCLRTLVEHSGRVFRL 455 (499)
T ss_pred ceEEEEeccccHHHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCCc-ccccchHHHhhhhccceeEEE
Confidence 99999999999999999999999999999876 69999999999999998764322 222333455566788899999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCccEE
Q 005254 501 AVAPNDSLVCTGSQDRTACVWRLPDLVSV 529 (706)
Q Consensus 501 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 529 (706)
.|. ...+++++.|.+|.|||+.++.+-
T Consensus 456 QFD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 456 QFD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 984 668999999999999999877554
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.6e-32 Score=287.10 Aligned_cols=308 Identities=22% Similarity=0.293 Sum_probs=240.8
Q ss_pred cCeEEEEECCCCeEEEEe-----eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC----e----EEEEeeCCCCcE
Q 005254 81 SREIRVWDLSTLKCLRSW-----KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG----F----CTHYFKGHKGVV 147 (706)
Q Consensus 81 d~~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~----~----~~~~~~~~~~~v 147 (706)
+|.+++|+..+.+....+ ..|...|.+++|+|++++||+|+.|+.|++|+.... . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 677889998876655443 348899999999999999999999999999997542 1 122233 45689
Q ss_pred EEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEec-CCCEEEEEeCCCEEEEEeCCCCcceeee
Q 005254 148 SSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
.+++|+|.. ..++++++.||+|++||+.+++.+..+.+|.+.|++++|+| ++.+|++++.||.|++||++++..+..+
T Consensus 536 ~~l~~~~~~-~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYI-KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCC-CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 999998853 23599999999999999999999999999999999999996 7889999999999999998754322111
Q ss_pred cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccc
Q 005254 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (706)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (706)
.
T Consensus 615 ~------------------------------------------------------------------------------- 615 (793)
T PLN00181 615 K------------------------------------------------------------------------------- 615 (793)
T ss_pred e-------------------------------------------------------------------------------
Confidence 0
Q ss_pred eeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
T Consensus 616 -------------------------------------------------------------------------------- 615 (793)
T PLN00181 616 -------------------------------------------------------------------------------- 615 (793)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce-EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCe
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT 465 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 465 (706)
.+ ..+.++. +.+++..++++|+.||.|++||+.+.+ .+..+.+|...|.++.|. ++. .+++++.|+.
T Consensus 616 -------~~-~~v~~v~--~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ 683 (793)
T PLN00181 616 -------TK-ANICCVQ--FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNT 683 (793)
T ss_pred -------cC-CCeEEEE--EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCE
Confidence 00 1233333 434334448889999999999988765 456677899999999997 444 7999999999
Q ss_pred EEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEE-------------
Q 005254 466 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF------------- 532 (706)
Q Consensus 466 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------- 532 (706)
|++||+..... .........+.+|...+.+++++|++.+|++|+.|+.|++|+.....++..+
T Consensus 684 ikiWd~~~~~~----~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~ 759 (793)
T PLN00181 684 LKLWDLSMSIS----GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEV 759 (793)
T ss_pred EEEEeCCCCcc----ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccccc
Confidence 99999875321 0112245567788999999999999999999999999999998765444322
Q ss_pred eecCCcEEEEEEccCCCEEEEecCCCcEEEEEc
Q 005254 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (706)
Q Consensus 533 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 565 (706)
..+...|.+++|+|++..|++|+.||.|+||++
T Consensus 760 ~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 760 DDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 234567999999999999999999999999996
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3e-34 Score=230.25 Aligned_cols=290 Identities=22% Similarity=0.394 Sum_probs=247.2
Q ss_pred EEeeccCCCeEEEEECC---CCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 96 RSWKGHDGPAIGMACHP---SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
.+-.+|+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+.+|.+|.+.|+..+...+... .++++.|-+-++
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~--aasaaadftakv 85 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATR--AASAAADFTAKV 85 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhh--hhhhcccchhhh
Confidence 34578999999999987 8889999999999999999999999999999999999999887655 889999999999
Q ss_pred EECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccccc
Q 005254 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 252 (706)
Q Consensus 173 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (706)
||.-+|..+..+. |..-|.+++|+.|.++|++|+.+..+++||++..+.
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A------------------------------ 134 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA------------------------------ 134 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCC------------------------------
Confidence 9999999998884 888999999999999999999999999998764221
Q ss_pred chhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEE
Q 005254 253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 332 (706)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (706)
T Consensus 135 -------------------------------------------------------------------------------- 134 (334)
T KOG0278|consen 135 -------------------------------------------------------------------------------- 134 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCE
Q 005254 333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412 (706)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 412 (706)
+...+.+|.+.|..+. +...++.
T Consensus 135 -------------------------------------------------------pp~E~~ghtg~Ir~v~--wc~eD~~ 157 (334)
T KOG0278|consen 135 -------------------------------------------------------PPKEISGHTGGIRTVL--WCHEDKC 157 (334)
T ss_pred -------------------------------------------------------CchhhcCCCCcceeEE--EeccCce
Confidence 1114455666666666 4455666
Q ss_pred EEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee
Q 005254 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 492 (706)
+++...|++||+||..++..++.+. ...+|+++.++++|+ +++....+.|.+||..... ......
T Consensus 158 -iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~-----------~lKs~k 222 (334)
T KOG0278|consen 158 -ILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFG-----------LLKSYK 222 (334)
T ss_pred -EEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCC--EEEEecCceeEEecccccc-----------ceeecc
Confidence 7777999999999999999998876 557899999999997 6777788899999987653 111223
Q ss_pred cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEE-eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce
Q 005254 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 570 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 570 (706)
....|.+..++|+...+++|++|..++.||..+++.+..+ ++|.++|.|+.|+|+|...++|++||+|++|....++.
T Consensus 223 ~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 223 MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 4456889999999999999999999999999999999986 89999999999999999999999999999999866543
No 65
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-34 Score=255.63 Aligned_cols=290 Identities=20% Similarity=0.307 Sum_probs=255.8
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC-ceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
......+|...|.++.|.|....++++++.|+.|++|++.. +.+++.+.+|..+|..+. ++.++.. +.+++.|+.+
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~--~s~~g~~-fLS~sfD~~l 282 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDAS--FNNCGTS-FLSASFDRFL 282 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhh--ccccCCe-eeeeecceee
Confidence 44667789999999999999999999999999999999987 889999999999999998 8888888 9999999999
Q ss_pred EEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 424 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 424 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
++||+++|+++..+. ....++++.|.|++++.+++|+.|+.|+.||++.++ .......|-+.|..+.|-
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k----------vvqeYd~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK----------VVQEYDRHLGAILDITFV 351 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH----------HHHHHHhhhhheeeeEEc
Confidence 999999999998876 456789999999998899999999999999999774 444455677889999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCccEEEEEee-cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC---ceEEEEeeccc
Q 005254 504 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG---SCLKTFEGHTS 579 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~ 579 (706)
++|+.+++.++|++++||+...+-++..... +.....++..+|++++++.-+.|..|.++.+... ...+.+++|..
T Consensus 352 ~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 352 DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec
Confidence 9999999999999999999988876655433 3445678999999999999999999999997543 23456777763
Q ss_pred --CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 005254 580 --SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE-MFATGGSDALVNLWH 648 (706)
Q Consensus 580 --~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~ 648 (706)
--..+.|||||++|++|+.||.+.+||.++-+.+..++.|.+++..+.|+|... .+||++.||.|++|+
T Consensus 432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 456789999999999999999999999999999999999999999999999754 789999999999996
No 66
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.3e-32 Score=219.03 Aligned_cols=241 Identities=20% Similarity=0.284 Sum_probs=204.5
Q ss_pred CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
+|.+.+..+. +.|....++++++.|.+|++||...+++........+.+ -+.|+|+|. ++++++.|..|.+.|.+.
T Consensus 62 gh~~svdql~--w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~-~~~~~~kdD~it~id~r~ 137 (313)
T KOG1407|consen 62 GHTDSVDQLC--WDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGE-YIAVGNKDDRITFIDART 137 (313)
T ss_pred CCCcchhhhe--eCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCC-EEEEecCcccEEEEEecc
Confidence 4444444444 666666779999999999999999999988876554444 578999988 899999999999999886
Q ss_pred CCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEE
Q 005254 474 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT 553 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 553 (706)
.. ..........+..++|+.++.+++.....|.|.|......+++..++.|.....|+.|+|+|+++|+
T Consensus 138 ~~-----------~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~ 206 (313)
T KOG1407|consen 138 YK-----------IVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFAT 206 (313)
T ss_pred cc-----------eeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEee
Confidence 53 2222334455778889888888887777899999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCC
Q 005254 554 ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE 633 (706)
Q Consensus 554 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 633 (706)
|+.|..+.+||++..-|.+.+..+.-+|..+.||.||++||++++|..|-|=++++|..+..++ +.++...++|+|...
T Consensus 207 GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~ 285 (313)
T KOG1407|consen 207 GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRP 285 (313)
T ss_pred ccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999998884 578899999999999
Q ss_pred EEEEEeCC---------CcEEEEECC
Q 005254 634 MFATGGSD---------ALVNLWHDS 650 (706)
Q Consensus 634 ~l~~~~~d---------g~i~vw~~~ 650 (706)
+|+-++.| |.++++-++
T Consensus 286 LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 286 LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeeEEecCCCCccccccceeEEecCC
Confidence 99977654 566776554
No 67
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-32 Score=221.32 Aligned_cols=296 Identities=21% Similarity=0.230 Sum_probs=247.7
Q ss_pred EecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
.+.+|..++..+.|.. ++.+|.+++.|....+|-..+++.+-.+.+|.+.|.|++ ...+.+. +++|+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~D--id~~s~~-liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCD--IDWDSKH-LITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEE--ecCCcce-eeeccccceeEEEE
Confidence 4567889999999975 889999999999999999999999999999999999998 6666666 99999999999999
Q ss_pred CCCceEEEEEeCCCcCeEEEEEecCCCeEEEEe----cCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG----SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
.++|+++..++ ...+|..+.|+++|...+++. +..+.|.++|++..... .....+......+...++.+-|.
T Consensus 81 v~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~---~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 81 VETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD---IDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred cCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh---hcccCceEEecCCccceeeeeec
Confidence 99999999876 457899999999988444443 34578999999865321 11222455566677889999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCccEE-EEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEE
Q 005254 504 PNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL 582 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 582 (706)
|-+++|++|..||.|.+||+++++.. ..-+.|...|+.+++++|..++++++.|.+-++||..+.++++++. -..+++
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN 235 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVN 235 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccccc
Confidence 99999999999999999999998554 4456799999999999999999999999999999999999999998 567999
Q ss_pred EEEEEeCCCEEEEEeCCCC--E------------EEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 583 RASFLTRGAQIVSCGADGL--V------------KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~dg~--i------------~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+.+++|-...++.|+.... | ++|++...+.+..+++|-++|++++|+|+|+..++|++||.|++..
T Consensus 236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence 9999998777777654321 2 2333333456777889999999999999999999999999999987
Q ss_pred CCch
Q 005254 649 DSTA 652 (706)
Q Consensus 649 ~~~~ 652 (706)
++..
T Consensus 316 Fd~~ 319 (327)
T KOG0643|consen 316 FDSN 319 (327)
T ss_pred eccc
Confidence 6543
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-32 Score=241.99 Aligned_cols=284 Identities=23% Similarity=0.388 Sum_probs=248.4
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
.....|.+++|+|....-+++++. -.+.+|+..+......+......+.+++ |-.+|+. +++|...|.|++||..+
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~--fR~DG~L-laaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVD--FRSDGRL-LAAGDESGHVKVFDMKS 99 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEE--eecCCeE-EEccCCcCcEEEecccc
Confidence 346789999999988888888776 6899999998888887888888888887 7777776 99999999999999888
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC-CCEE
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLV 509 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l 509 (706)
...++.+.+|..++..+.|+|++...+++|+.|+.+++||+.+.. ....+.+|...|.|.+++|. +.++
T Consensus 100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----------v~~~l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----------VQAELSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE----------EEEEecCCcceeEeeccccCCCeEE
Confidence 778888999999999999999999899999999999999998752 34567889999999999995 5689
Q ss_pred EEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC-ceEEEEeecccCEEEEEEE
Q 005254 510 CTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 510 ~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s 587 (706)
++|+.||.|++||++.. ..+..+. |..+|..+.+-|.|..+++++.. .|+|||+.+| +.+..+..|...|+|+.+.
T Consensus 170 vtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLA 247 (487)
T ss_pred EecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEee
Confidence 99999999999999987 5555555 99999999999999999998765 5999999865 4455555599999999999
Q ss_pred eCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 588 TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 588 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
.++..|++++-|+.+++||+.+.+.+..+.- .++|.+++.+||++.++.|..||.+.+=+...
T Consensus 248 s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 248 SDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred cCCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 9999999999999999999999999888854 78999999999999999999999988874433
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-32 Score=220.11 Aligned_cols=281 Identities=21% Similarity=0.285 Sum_probs=235.1
Q ss_pred eEeeEeCCCCcEEEEEec-------CCcEEEEeCCCceeeEeee--CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 357 LDLKFLGEEEQYLAVATN-------IEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~-------~~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
.++.|+|--++.|++++. .|.+.+.++...+.+.... .-.+.+..++ +++.....+++++.||++++||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~--Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVA--WSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEee--ecCCCcceEEEEecCceEEEec
Confidence 467777766666666543 5789999987544444433 3455667776 6677777799999999999999
Q ss_pred CCC-ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-C
Q 005254 428 SES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-N 505 (706)
Q Consensus 428 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~ 505 (706)
+.. ..++..++.|...|.++.|++..+..+++++.|++|++|+..... ...++.+|...|...+|+| .
T Consensus 90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~----------Sv~Tf~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN----------SVQTFNGHNSCIYQAAFSPHI 159 (311)
T ss_pred cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc----------ceEeecCCccEEEEEecCCCC
Confidence 653 357788899999999999999888889999999999999987653 6677899999999999999 6
Q ss_pred CCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEcc-CCCEEEEecCCCcEEEEEcCCC-ceEEEEeecccCEEE
Q 005254 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLR 583 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~ 583 (706)
.+++++++.|+.+++||++.......+..|..++.++.|+. +...|++|+.|+.|++||+++. .++.++.+|.-.|..
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk 239 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK 239 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE
Confidence 78999999999999999987655566999999999999997 5678999999999999999875 458899999999999
Q ss_pred EEEEeCC-CEEEEEeCCCCEEEEECCCCe-EEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 005254 584 ASFLTRG-AQIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLWHD 649 (706)
Q Consensus 584 ~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~ 649 (706)
+.|||.. ..|++++.|-+++|||...+. .+.+...|..-+..+.||+- +.++++++.|+.++||+.
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999954 478999999999999998554 56677789999999999874 668999999999999984
No 70
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.6e-31 Score=228.17 Aligned_cols=291 Identities=21% Similarity=0.358 Sum_probs=243.4
Q ss_pred cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 352 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
|...|.++.. .+..+++++.||.+++||.. ++....+.+|.+++..+++....+....|++++.|.++++|..+.+
T Consensus 104 hdDWVSsv~~---~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 104 HDDWVSSVKG---ASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred chhhhhhhcc---cCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 4455555554 37899999999999999975 5667789999999998886665555567999999999999988876
Q ss_pred eEE----EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC---------------cccccceeEEEee
Q 005254 432 CCV----GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE---------------QPMNLKAKAVVAA 492 (706)
Q Consensus 432 ~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~---------------~~~~~~~~~~~~~ 492 (706)
... ....+|...|.++...+++. .+++|+.|..|.+|+......... ......+...+.+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 533 33458999999999999987 899999999999999432211110 1112335567889
Q ss_pred cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc---
Q 005254 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS--- 569 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--- 569 (706)
|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.+ .....++..+|..++|++|+.|..|++||.+++.
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 999999999998 66899999999999999999999888774 5678999999999999999999999999998763
Q ss_pred eEEEEeecccCEEEEEEEeCCC-EEEEEeCCCCEEEEECCCCe-EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005254 570 CLKTFEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647 (706)
Q Consensus 570 ~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 647 (706)
..+++.+|.+.|.++.|+|... .|++++.|+++++||+++.+ ++..+.+|.+.|.++.|. ++.++++||.|..|+++
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 4678899999999999999665 57899999999999999988 999999999999999996 56689999999999998
Q ss_pred ECC
Q 005254 648 HDS 650 (706)
Q Consensus 648 ~~~ 650 (706)
.-.
T Consensus 416 ~~~ 418 (423)
T KOG0313|consen 416 KGS 418 (423)
T ss_pred ccc
Confidence 754
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.9e-33 Score=232.86 Aligned_cols=282 Identities=21% Similarity=0.351 Sum_probs=242.6
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe--------eCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF--------KGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
....+.|..|||||+||++|+.||.|-+||..+|+..+.+ .-+...|.|+.|+.|... +++|+.||.|++
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM--lAsGsqDGkIKv 289 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM--LASGSQDGKIKV 289 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHH--hhccCcCCcEEE
Confidence 4567889999999999999999999999999999865443 347889999999998776 999999999999
Q ss_pred EECCCCeeEEEee-cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccc
Q 005254 173 WDLLAKKCVATLD-KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY 251 (706)
Q Consensus 173 wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (706)
|.+++|.+++.+. .|...|+|+.|+.|+..+++++.|.++++.-++++++
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~----------------------------- 340 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC----------------------------- 340 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-----------------------------
Confidence 9999999999986 8999999999999999999999998888776655443
Q ss_pred cchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEE
Q 005254 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (706)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (706)
T Consensus 341 -------------------------------------------------------------------------------- 340 (508)
T KOG0275|consen 341 -------------------------------------------------------------------------------- 340 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCC
Q 005254 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK 411 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 411 (706)
+..+.+|...++... +.+++.
T Consensus 341 ---------------------------------------------------------LKEfrGHsSyvn~a~--ft~dG~ 361 (508)
T KOG0275|consen 341 ---------------------------------------------------------LKEFRGHSSYVNEAT--FTDDGH 361 (508)
T ss_pred ---------------------------------------------------------HHHhcCccccccceE--EcCCCC
Confidence 335566766666665 778888
Q ss_pred EEEEEeeCCCcEEEEeCCCceEEEEEeC--CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE
Q 005254 412 ILIVTGSKDNSVRLWDSESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 489 (706)
. +++++.||+|++|+..+.+++.+++. ...+|.++-.-|.+...++++...+++.+.++... ....
T Consensus 362 ~-iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-----------vVrs 429 (508)
T KOG0275|consen 362 H-IISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-----------VVRS 429 (508)
T ss_pred e-EEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-----------EEee
Confidence 8 99999999999999999999988764 45678888888888888999999999999998753 2222
Q ss_pred E---eecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 490 V---AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 490 ~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
+ ...++...+.++||.|.++.+.++|+.++.|...+|+....+.-|...|..++-+|..+.||+-++||.+++|.
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 2 22345677788999999999999999999999999999999999999999999999999999999999999995
No 72
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-30 Score=216.08 Aligned_cols=287 Identities=18% Similarity=0.273 Sum_probs=239.1
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC--CCcEE
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVR 424 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~--dg~i~ 424 (706)
+.+......+.++.|.. ++..+++++.|..+++||..+++....+..+.-.+..+. |...... ++.++. |.+|+
T Consensus 8 k~f~~~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~--Fth~~~~-~i~sStk~d~tIr 83 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLAC--FTHHSNT-VIHSSTKEDDTIR 83 (311)
T ss_pred cccccCCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEE--EecCCce-EEEccCCCCCceE
Confidence 44445678899999986 788888899999999999999999999998877777666 6666666 444444 88999
Q ss_pred EEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 425 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
..++.+.+.++.+.+|...|.+++.+|-+. .+++++.|++|++||++... +...+.. ..-..++|.|
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~----------cqg~l~~--~~~pi~AfDp 150 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKK----------CQGLLNL--SGRPIAAFDP 150 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCC----------CceEEec--CCCcceeECC
Confidence 999999999999999999999999999885 89999999999999998543 2222222 2234578999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCc--cEEEEEe---ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc
Q 005254 505 NDSLVCTGSQDRTACVWRLPDL--VSVVTFR---GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 579 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 579 (706)
+|-++|++...+.|++||++.. .+...+. +...+.+.+.|||||++|+.+...+.+++.|.-+|..+.++..+..
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~ 230 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN 230 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC
Confidence 9999999998889999999854 3444433 3467889999999999999999999999999999999999887765
Q ss_pred CE---EEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 580 SV---LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 580 ~i---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
.- ....|+||++++++|+.||+|.+|++++|..+..+++ +.+++.++.|+|.-.+++++ +..+.+|-....
T Consensus 231 ~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 231 AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDED 305 (311)
T ss_pred CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecccc
Confidence 33 6789999999999999999999999999999999998 78999999998887777766 456888866543
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-31 Score=216.58 Aligned_cols=214 Identities=19% Similarity=0.303 Sum_probs=194.0
Q ss_pred eEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCC
Q 005254 25 LVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG 103 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 103 (706)
+-++.+|.+|.+++.+ ...+|-..+|+.+.++.||++.|.|+..+.+.+++++|+.|.++++||+++|+++..++ ...
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~ 94 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNS 94 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCC
Confidence 7788999999999888 78999988999999999999999999999999999999999999999999999999999 568
Q ss_pred CeEEEEECCCCCEEEEecC-----CCcEEEEECC-------CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 104 PAIGMACHPSGGLLATAGA-----DRKVLVWDVD-------GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~~~~~-----d~~i~vw~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
+|..+.|+++|.+++...+ .+.|.++|++ +.++...+..+...++.+-|.|-++. +++|.+||.|.
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~--ii~Ghe~G~is 172 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET--IIAGHEDGSIS 172 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE--EEEecCCCcEE
Confidence 9999999999998887653 4679999997 45667788889999999999998887 99999999999
Q ss_pred EEECCCCe-eEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCC
Q 005254 172 VWDLLAKK-CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPG 241 (706)
Q Consensus 172 vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (706)
.||+++++ .+...+.|...|+.|++++|..++++++.|.+-++||..+.+.++++....+++..+.+|..
T Consensus 173 ~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 173 IYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLL 243 (327)
T ss_pred EEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceeccccc
Confidence 99999985 45556789999999999999999999999999999999999999999888888777776654
No 74
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=6.7e-31 Score=224.42 Aligned_cols=312 Identities=22% Similarity=0.372 Sum_probs=244.6
Q ss_pred eEEcCCCCEEEEeeCCeEEEEE--------------ccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECC
Q 005254 25 LVVSSDGSFIACACGESINIVD--------------LSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS 90 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d--------------~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~ 90 (706)
..|--+|++|-+.-...|.-.. +...+.+..+. |...|.++... +++|++|+.||.+++||.
T Consensus 57 FDFLi~gelLRtsL~e~l~~kgiSsE~~leIEYv~~~~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~- 132 (423)
T KOG0313|consen 57 FDFLIKGELLRTSLDEHLEEKGISSEEILEIEYVEAITAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDL- 132 (423)
T ss_pred ceEEEcceeeeccHHHHHHHcCcChhheeEEEEEEecCCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEec-
Confidence 5555567776555433222222 22233334443 78889999888 889999999999999995
Q ss_pred CCeEEEEeeccCCCeEEEEECCCC---CEEEEecCCCcEEEEECCCCeE----EEEeeCCCCcEEEEEEcCCCCceEEEE
Q 005254 91 TLKCLRSWKGHDGPAIGMACHPSG---GLLATAGADRKVLVWDVDGGFC----THYFKGHKGVVSSILFHPDTDKSLLFS 163 (706)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~~ 163 (706)
.|+....+.+|.++|.+++|.-.+ ..+++++.|.++++|.++.++. +....||...|.+++..+++.. +++
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr--~~S 210 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTR--FCS 210 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCe--EEe
Confidence 678899999999999988875433 3699999999999999987753 3344599999999999998887 999
Q ss_pred EecCCeEEEEECCC-------------------------CeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCC
Q 005254 164 GSDDATVRVWDLLA-------------------------KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 218 (706)
Q Consensus 164 ~~~dg~i~vwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 218 (706)
|+.|.+|.+|+.+. +.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.
T Consensus 211 gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 211 GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence 99999999999321 235667889999999999998 5689999999999999999
Q ss_pred CCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcccccc
Q 005254 219 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 298 (706)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 298 (706)
++..+..+.......++...+
T Consensus 290 tg~~~~~~~~~ksl~~i~~~~----------------------------------------------------------- 310 (423)
T KOG0313|consen 290 TGGLKSTLTTNKSLNCISYSP----------------------------------------------------------- 310 (423)
T ss_pred cccceeeeecCcceeEeeccc-----------------------------------------------------------
Confidence 988877765554444443333
Q ss_pred ccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcE
Q 005254 299 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 378 (706)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 378 (706)
...++++++.+..+
T Consensus 311 ------------------------------------------------------------------~~~Ll~~gssdr~i 324 (423)
T KOG0313|consen 311 ------------------------------------------------------------------LSKLLASGSSDRHI 324 (423)
T ss_pred ------------------------------------------------------------------ccceeeecCCCCce
Confidence 34455555555666
Q ss_pred EEEeCCCce---eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce-EEEEEeCCCcCeEEEEEecCCC
Q 005254 379 QVYDLSSMS---CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 379 ~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~ 454 (706)
++||..++. ....+.+|...|.++. ++|.+..+|++++.|+++++||+++.+ ++..+.+|...|.++.|+..+
T Consensus 325 rl~DPR~~~gs~v~~s~~gH~nwVssvk--wsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~- 401 (423)
T KOG0313|consen 325 RLWDPRTGDGSVVSQSLIGHKNWVSSVK--WSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG- 401 (423)
T ss_pred eecCCCCCCCceeEEeeecchhhhhhee--cCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc-
Confidence 666655432 3457788999999998 889999999999999999999999887 899999999999999999874
Q ss_pred eEEEEecCCCeEEEEEec
Q 005254 455 NFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 455 ~~l~~~~~d~~i~i~~~~ 472 (706)
.+++|+.|.+|+++.-.
T Consensus 402 -~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 402 -LIVSGGADNKLRIFKGS 418 (423)
T ss_pred -eEEeccCcceEEEeccc
Confidence 69999999999998654
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-31 Score=241.85 Aligned_cols=270 Identities=21% Similarity=0.363 Sum_probs=240.4
Q ss_pred CcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-CCcCe
Q 005254 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAV 444 (706)
Q Consensus 366 ~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v 444 (706)
.+.++++.. ..+++|+..++........+...++++. +.+++.. |++|..+|.|.|||..+.+.+..+.. |...|
T Consensus 188 ~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~--ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rv 263 (484)
T KOG0305|consen 188 ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVK--WSPDGSH-LAVGTSDGTVQIWDVKEQKKTRTLRGSHASRV 263 (484)
T ss_pred CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEE--ECCCCCE-EEEeecCCeEEEEehhhccccccccCCcCcee
Confidence 445666654 7899999999997777777788999998 8888888 99999999999999999999999988 99999
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
.+++|... .+.+|+.++.|..+|++..... .....+|...|..+.|++|++++|+|+.|+.+.|||..
T Consensus 264 g~laW~~~---~lssGsr~~~I~~~dvR~~~~~---------~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 264 GSLAWNSS---VLSSGSRDGKILNHDVRISQHV---------VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred EEEeccCc---eEEEecCCCcEEEEEEecchhh---------hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence 99999944 7999999999999999875421 11377899999999999999999999999999999998
Q ss_pred CccEEEEEeecCCcEEEEEEcc-CCCEEEEec--CCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEE--EeCC
Q 005254 525 DLVSVVTFRGHKRGIWSVEFSP-VDQVVITAS--GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS--CGAD 599 (706)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~d 599 (706)
..++...+..|...|.+++|+| ....||+|+ .|+.|++||..+++.+..+. -.+.|..+.|++..+-|++ |..+
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCC
Confidence 8899999999999999999999 567888875 59999999999999998887 5678999999999876665 4456
Q ss_pred CCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 600 GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
+.|.||+..+.+.+..+.+|...|..+++||||..+++|+.|.++++|++-+.
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 78999999999999999999999999999999999999999999999999876
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=7.8e-31 Score=253.14 Aligned_cols=280 Identities=29% Similarity=0.490 Sum_probs=250.1
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEe-eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
...+.+..+. ...+++++.++.+.+|+..++..+.. +.+|.+.+.++. +.. +..++++|+.|.++++||..++
T Consensus 208 ~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~--~~~-~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 208 DHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLA--FPS-GGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cchhhhheee---cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEE--Eec-CCCEEEEEecCCcEEeEecCCC
Confidence 3444444443 67899999999999999999999888 999999999996 444 5555999999999999999999
Q ss_pred eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE
Q 005254 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (706)
++...+.+|.+.+.++...+. .+++|+.|.+|++|+++++. ....+.+|..+|.++..+ +.++++
T Consensus 282 ~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~----------~l~l~~~h~~~V~~v~~~--~~~lvs 346 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGA----------CLNLLRGHTGPVNCVQLD--EPLLVS 346 (537)
T ss_pred cEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcc----------eEEEeccccccEEEEEec--CCEEEE
Confidence 999999999999999998876 78889999999999999664 667777799999999998 789999
Q ss_pred eeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC-ceEEEEeecccCEEEEEEEeCC
Q 005254 512 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG 590 (706)
Q Consensus 512 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~ 590 (706)
|+.|++|++||+.+++.+..+.+|...|.++.+.+. ..+++|+.|+.|++||+.+. +++.++.+|.+-+..+.+ .+
T Consensus 347 gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~ 423 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RD 423 (537)
T ss_pred EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--cc
Confidence 999999999999999999999999999999988765 89999999999999999999 999999999988865555 56
Q ss_pred CEEEEEeCCCCEEEEECCCCeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHH
Q 005254 591 AQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEA 658 (706)
Q Consensus 591 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 658 (706)
++|++++.|+.|++||..+++++..+.+ |...|.++++. ...+++++.||.+.+||+.++......
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 7999999999999999999999999998 77899999886 567888999999999999999887655
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-30 Score=209.63 Aligned_cols=278 Identities=19% Similarity=0.313 Sum_probs=232.3
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE--eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEE
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY--FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 173 (706)
+.+.+|...+.+++|+.+|..|++|+.|+++.+|+++..+.... .++|.+.|..++|+|.. ..++++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceEEEE
Confidence 45678999999999999999999999999999999988765543 46799999999999863 3469999999999999
Q ss_pred ECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccc
Q 005254 174 DLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQ 253 (706)
Q Consensus 174 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (706)
|.+.+++........+.+ -+.|+|+|.+++.++.|..|.+.|.++.+.....+....
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e---------------------- 149 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE---------------------- 149 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce----------------------
Confidence 999999998886554444 467999999999999999999999876554433221110
Q ss_pred hhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEe
Q 005254 254 QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTT 333 (706)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 333 (706)
T Consensus 150 -------------------------------------------------------------------------------- 149 (313)
T KOG1407|consen 150 -------------------------------------------------------------------------------- 149 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEE
Q 005254 334 VEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL 413 (706)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 413 (706)
+..+. +..++..
T Consensus 150 -----------------------------------------------------------------~ne~~--w~~~nd~- 161 (313)
T KOG1407|consen 150 -----------------------------------------------------------------VNEIS--WNNSNDL- 161 (313)
T ss_pred -----------------------------------------------------------------eeeee--ecCCCCE-
Confidence 11111 3333333
Q ss_pred EEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec
Q 005254 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (706)
++.....|+|.|.....-+++..+++|.....++.|+|+|+ ++++|+.|..+.+||++.. .+...+..+
T Consensus 162 Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~EL----------iC~R~isRl 230 (313)
T KOG1407|consen 162 FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDEL----------ICERCISRL 230 (313)
T ss_pred EEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHh----------hhheeeccc
Confidence 45555568999999999999999999999999999999998 9999999999999999753 377788889
Q ss_pred CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCC
Q 005254 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 557 (706)
.-+|..+.||.||++||++++|..|-|=++++|..+..++ +.++...++|+|...+||.++.|
T Consensus 231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 9999999999999999999999999999999999999988 78899999999999999988765
No 78
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-30 Score=241.25 Aligned_cols=276 Identities=25% Similarity=0.398 Sum_probs=238.3
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec-cC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~ 102 (706)
-+.+| ..+.||++.+..+++|+..+++.....+.+...|+++.|+++|.+||+|..+|.|.|||.++.+.+..+.+ |.
T Consensus 182 lldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred Hhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 46777 66799999999999999999997777776689999999999999999999999999999999999999999 99
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeE
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY-FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 181 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 181 (706)
..|-+++|. +..+.+|+.++.|..+|+...+.... +.+|...|..+.|++|+.. +++|+.|+.+.|||.....+.
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--LASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe--eccCCCccceEeccCCCcccc
Confidence 999999999 67799999999999999988766555 8889999999999999887 999999999999999888999
Q ss_pred EEeecccceEEEEEEec-CCCEEEEEe--CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhc
Q 005254 182 ATLDKHFSRVTSMAITS-DGSTLISAG--RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 258 (706)
Q Consensus 182 ~~~~~~~~~v~~~~~~~-~~~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (706)
..+..|.+.|.+++|+| ...+|++|+ .|+.|++||..++..+..+.....
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ--------------------------- 389 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ--------------------------- 389 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc---------------------------
Confidence 99999999999999999 455788875 588999999987776655544333
Q ss_pred cccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccc
Q 005254 259 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE 338 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 338 (706)
T Consensus 390 -------------------------------------------------------------------------------- 389 (484)
T KOG0305|consen 390 -------------------------------------------------------------------------------- 389 (484)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeEEeeEecccCceeeEeeEeCCCCcEEEE-EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEe
Q 005254 339 KKMELILSKRLVGYNEEILDLKFLGEEEQYLAV-ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 417 (706)
Q Consensus 339 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 417 (706)
|..+.|++...+++.+ |..++.|.+|+..+.+....+.+|...|..++ .+|++.. +++|
T Consensus 390 -----------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la--~SPdg~~-i~t~ 449 (484)
T KOG0305|consen 390 -----------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLA--LSPDGET-IVTG 449 (484)
T ss_pred -----------------eeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEE--ECCCCCE-EEEe
Confidence 4444444434333333 45567899999999999999999999999998 8899888 9999
Q ss_pred eCCCcEEEEeCCCc
Q 005254 418 SKDNSVRLWDSESR 431 (706)
Q Consensus 418 ~~dg~i~i~d~~~~ 431 (706)
+.|.++++|++-..
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999998764
No 79
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-31 Score=250.53 Aligned_cols=260 Identities=23% Similarity=0.373 Sum_probs=213.3
Q ss_pred EEEeec-CCCccEEEEEEccCCCEEEEEeccCeEEEEECCC---------------------------------------
Q 005254 52 IKSTIE-GGSDTITALALSPDDKLLFSSGHSREIRVWDLST--------------------------------------- 91 (706)
Q Consensus 52 ~~~~l~-~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~--------------------------------------- 91 (706)
..+.+. .|.+.|.++.||+||+|||+||.|+.|+||.+..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 445666 8999999999999999999999999999998753
Q ss_pred ---------------------CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEE
Q 005254 92 ---------------------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSI 150 (706)
Q Consensus 92 ---------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~ 150 (706)
.++++.+.||.+.|..+.||.++ +|++++.|.+|++|++...++++.|. |..-|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 12344567999999999999875 89999999999999999999999998 99999999
Q ss_pred EEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcc
Q 005254 151 LFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 151 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 230 (706)
+|+|-.+ +++++|+-||.|+||++...+.+.-.. -..-|++++|+|||+..++|+.+|..++|+....+.........
T Consensus 416 aFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 416 AFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EecccCC-CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 9999744 579999999999999998777665444 34789999999999999999999999999988765443322100
Q ss_pred eeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEE
Q 005254 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAA 310 (706)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (706)
T Consensus 494 -------------------------------------------------------------------------------- 493 (712)
T KOG0283|consen 494 -------------------------------------------------------------------------------- 493 (712)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeE
Q 005254 311 TVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY 390 (706)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~ 390 (706)
...-......|+++.|.|.+...+++.+.|..|++||......+.
T Consensus 494 -----------------------------------~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~ 538 (712)
T KOG0283|consen 494 -----------------------------------HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH 538 (712)
T ss_pred -----------------------------------ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh
Confidence 000011123788999998888899999999999999999888888
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
.+++....-..+...+..++++ ++++++|..|++|+....
T Consensus 539 KfKG~~n~~SQ~~Asfs~Dgk~-IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 539 KFKGFRNTSSQISASFSSDGKH-IVSASEDSWVYIWKNDSF 578 (712)
T ss_pred hhcccccCCcceeeeEccCCCE-EEEeecCceEEEEeCCCC
Confidence 8887665544444448888888 999999999999998643
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=2.6e-30 Score=226.77 Aligned_cols=300 Identities=28% Similarity=0.400 Sum_probs=232.5
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEE----E-------------e-eccCCCeEEEEECCCC
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR----S-------------W-KGHDGPAIGMACHPSG 114 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~----~-------------~-~~~~~~v~~~~~s~~~ 114 (706)
...+..|.-+|+|++++||.++..+++.+++|.=|++.+++... . - +.|...+.+++.|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45667899999999999999999999999999999998876331 1 0 2678899999999999
Q ss_pred CEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEE
Q 005254 115 GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 194 (706)
Q Consensus 115 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 194 (706)
+|||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-..... +++++.|+.|++|+++....+.++.+|++.|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~--lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSE--LYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccc--eeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 99999999999999999999999999999999999999876666 9999999999999999999999999999999999
Q ss_pred EEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCC
Q 005254 195 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 274 (706)
Q Consensus 195 ~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (706)
....-++.+.+|+.|+++++|++.....+.-......+.++++..+. +|++|+.+|
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~------------------------HfvsGSdnG 348 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE------------------------HFVSGSDNG 348 (479)
T ss_pred chhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc------------------------ceeeccCCc
Confidence 99988888888889999999999766555555555566666666555 677777778
Q ss_pred eEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCc
Q 005254 275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354 (706)
Q Consensus 275 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (706)
.|.+|++.....+.......
T Consensus 349 ~IaLWs~~KKkplf~~~~AH------------------------------------------------------------ 368 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAH------------------------------------------------------------ 368 (479)
T ss_pred eEEEeeecccCceeEeeccc------------------------------------------------------------
Confidence 77777766542211100000
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc---
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR--- 431 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--- 431 (706)
|.+-.. ....+...|++++ ..+..+ ++++|+.+|.|++|-+..+
T Consensus 369 ---------------------gv~~~~---------~~~~~~~Witsla--~i~~sd-L~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 369 ---------------------GVIPEL---------DPVNGNFWITSLA--VIPGSD-LLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred ---------------------cccCCc---------cccccccceeeeE--ecccCc-eEEecCCCCceEEEEecCCccc
Confidence 000000 0001123566775 445444 4999999999999998877
Q ss_pred -eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEec
Q 005254 432 -CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 432 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 472 (706)
.++..+. -.+.|++++|+++|+.+++..+....+--|-..
T Consensus 416 i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 416 INLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred cceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 3334444 678999999999999677776777666666543
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=7.1e-30 Score=246.52 Aligned_cols=284 Identities=29% Similarity=0.513 Sum_probs=245.9
Q ss_pred CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEE-eeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Q 005254 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRS-WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT 137 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~ 137 (706)
+...+.+..|. ..++++++.+++|++||..++..+.. +.+|.+.|.+++|..-+.+|++|+.|.++++||..+|++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56788999999 56789999999999999999999888 9999999999999988889999999999999999999999
Q ss_pred EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 138 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
+.+.+|...|.++...+. ++++|+.|.+|++|+++++..+..+.+|.++|.++... +.++++|+.|+.|++|++
T Consensus 285 ~~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEh
Confidence 999999999999998653 38889999999999999999999999999999999997 779999999999999987
Q ss_pred CCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccc
Q 005254 218 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 297 (706)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 297 (706)
.+++
T Consensus 359 ~~~~---------------------------------------------------------------------------- 362 (537)
T KOG0274|consen 359 RTGK---------------------------------------------------------------------------- 362 (537)
T ss_pred hhce----------------------------------------------------------------------------
Confidence 5433
Q ss_pred cccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCc
Q 005254 298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 377 (706)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 377 (706)
T Consensus 363 -------------------------------------------------------------------------------- 362 (537)
T KOG0274|consen 363 -------------------------------------------------------------------------------- 362 (537)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc-eEEEEEeCCCcCeEEEEEecCCCeE
Q 005254 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQNF 456 (706)
Q Consensus 378 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~ 456 (706)
++..+.+|...|.++. +.+. .. +++|+.|++|++||+.+. +++..+..|...+..+.+... +
T Consensus 363 ----------cl~sl~gH~~~V~sl~--~~~~-~~-~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~---~ 425 (537)
T KOG0274|consen 363 ----------CLKSLSGHTGRVYSLI--VDSE-NR-LLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDN---F 425 (537)
T ss_pred ----------eeeeecCCcceEEEEE--ecCc-ce-EEeeeeccceEeecCCchhhhhhhhcCCcccccccccccc---e
Confidence 3345667778888774 4333 44 999999999999999999 999999999999977777655 8
Q ss_pred EEEecCCCeEEEEEecCCCCCCCcccccceeEEEee-cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeec
Q 005254 457 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH 535 (706)
Q Consensus 457 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 535 (706)
|++++.|++|++||...+. ......+ |...|..+++. ...+++++.||.+.+||+++++....+-.+
T Consensus 426 Lvs~~aD~~Ik~WD~~~~~----------~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 426 LVSSSADGTIKLWDAEEGE----------CLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred eEeccccccEEEeecccCc----------eeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 9999999999999998764 5555555 56778888876 567888999999999999999888876433
No 82
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=7.6e-29 Score=207.51 Aligned_cols=292 Identities=23% Similarity=0.335 Sum_probs=235.9
Q ss_pred EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecC--CCcEEEE
Q 005254 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA--DRKVLVW 129 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~vw 129 (706)
+.+.+......|+++.|+++|.+|++++.|..|+|||..+++.++++..++..+..+.|......++.++. |.+|+.-
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 33455556788999999999999999999999999999999999999999999999999887777777765 8899999
Q ss_pred ECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 130 DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 130 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
++.+.+.+..|.||...|..++.+|-++. +++++.|++|++||++..++...+... .-...+|.|+|-.++++...
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~--FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDT--FLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCe--EEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCC
Confidence 99999999999999999999999998876 999999999999999988887766443 33457899999988888887
Q ss_pred CEEEEEeCCCCcc--eeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEE
Q 005254 210 KVVNLWDLRDYSC--KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 210 g~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
..|++||++.... ...+..
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i----------------------------------------------------------- 182 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSI----------------------------------------------------------- 182 (311)
T ss_pred CeEEEEEecccCCCCceeEcc-----------------------------------------------------------
Confidence 7999999875321 110000
Q ss_pred eeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCc
Q 005254 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367 (706)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 367 (706)
......+...+.|+| +++
T Consensus 183 -------------------------------------------------------------~~~~~~ew~~l~FS~-dGK 200 (311)
T KOG1446|consen 183 -------------------------------------------------------------TDNDEAEWTDLEFSP-DGK 200 (311)
T ss_pred -------------------------------------------------------------CCCCccceeeeEEcC-CCC
Confidence 001233455666665 777
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceE-EEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-CCcCeE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV-LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVG 445 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~ 445 (706)
.++.++..+.+++.|.-+|.....+.++...- ..+..++.|+++. +++|+.||+|.+|+++++..+..+.+ +.+++.
T Consensus 201 ~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~ 279 (311)
T KOG1446|consen 201 SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVS 279 (311)
T ss_pred EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCCcEeeEecCCCCCCcc
Confidence 88888888999999999988887777665432 2245558899988 99999999999999999999999888 689999
Q ss_pred EEEEecCCCeEEEEecCCCeEEEEEec
Q 005254 446 AVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~i~i~~~~ 472 (706)
++.|+|.. ....+.+..+.+|-..
T Consensus 280 ~~~fnP~~---~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 280 CVRFNPRY---AMFVSASSNLVFWLPD 303 (311)
T ss_pred ccccCCce---eeeeecCceEEEEecc
Confidence 99999983 4444555667888654
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.9e-30 Score=227.51 Aligned_cols=286 Identities=19% Similarity=0.337 Sum_probs=250.6
Q ss_pred CCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEE
Q 005254 301 DDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV 380 (706)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~ 380 (706)
......+.+++++|...+=++.+..-.+.+|+..... ..+.+..+...+.++.|-. ++.++++|...|.|++
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~-------~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS-------VRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKV 94 (487)
T ss_pred ccccCcceeEecCCCCCCceEEecccEEEEEecchhh-------hhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEE
Confidence 4456778999999999999999999999999877543 2234556677888888876 8999999999999999
Q ss_pred EeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEe
Q 005254 381 YDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG 460 (706)
Q Consensus 381 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 460 (706)
||..+...+..+..|..++.... |.|.++..+++|++|+.+++||+.+......+.+|...|.+.+++|....++++|
T Consensus 95 fD~k~r~iLR~~~ah~apv~~~~--f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 95 FDMKSRVILRQLYAHQAPVHVTK--FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred eccccHHHHHHHhhccCceeEEE--ecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEec
Confidence 99888778889999999999998 8899999999999999999999999998778999999999999999988899999
Q ss_pred cCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc-EEEEEeecCCcE
Q 005254 461 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGI 539 (706)
Q Consensus 461 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v 539 (706)
+.||.|++||.+... .......|+.+|..+.+-|.|..+++++. ..|++||+.+|. .+..+..|...|
T Consensus 173 sYDg~vrl~DtR~~~----------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtV 241 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLT----------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTV 241 (487)
T ss_pred CCCceEEEEEeccCC----------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceE
Confidence 999999999998653 34445679999999999999999999874 579999999664 444555599999
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
+|+++..++..|++++-|+.+++||+.+.+.+..+. -.++|.+++.+|+++.++.|..||.+.+-+..
T Consensus 242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred EEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhh
Confidence 999999999999999999999999999999999887 67899999999999999999999988877443
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.3e-30 Score=210.19 Aligned_cols=268 Identities=22% Similarity=0.383 Sum_probs=227.4
Q ss_pred eeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC-ceeeEeeeCCcceEEE
Q 005254 323 TADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSEIVLC 401 (706)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~i~~ 401 (706)
..+|++.+.+....+. ............+.+++|++..++.+++++.||.+++||+.. ..++..++.|...|.+
T Consensus 35 ~G~G~L~ile~~~~~g-----i~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~S 109 (311)
T KOG0277|consen 35 AGNGRLFILEVTDPKG-----IQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYS 109 (311)
T ss_pred ccCceEEEEecCCCCC-----eEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEE
Confidence 3467777777652211 111222345678899999999999999999999999999653 4567788999999999
Q ss_pred eeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcc
Q 005254 402 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481 (706)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 481 (706)
++ +.+..+..+++++.|++|++|+...++.+.++.+|...|...+|+|..++++++++.|+.+++||++...
T Consensus 110 vd--wn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g------ 181 (311)
T KOG0277|consen 110 VD--WNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG------ 181 (311)
T ss_pred ec--cccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC------
Confidence 99 7777777789999999999999999999999999999999999999999999999999999999998653
Q ss_pred cccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCC-CEEEEecCCC
Q 005254 482 MNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDK 558 (706)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg 558 (706)
....+..|...|.++.|+. +.+.|++|+.|+.|+.||++.. .++..+.+|.-.|..+.|||.. ..|++++.|-
T Consensus 182 ----k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 182 ----KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred ----ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence 3444788889999999998 6678999999999999999875 5678889999999999999964 6789999999
Q ss_pred cEEEEEcCCC-ceEEEEeecccCEEEEEEEe-CCCEEEEEeCCCCEEEEEC
Q 005254 559 TIKIWSISDG-SCLKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 559 ~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~ 607 (706)
+++|||...+ .++.+...|..-+..+.||+ +..++|+++-|+.++||+.
T Consensus 258 T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 258 TVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999998755 45666777888899999987 5679999999999999984
No 85
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=1e-30 Score=217.04 Aligned_cols=201 Identities=24% Similarity=0.484 Sum_probs=174.7
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccC------------------CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeE
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSN------------------ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREI 84 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~------------------~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i 84 (706)
+-+|||||.++|+|+.+ .|.|+|++. ...+++|-.|..+|+++.|+|....|++++.|++|
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tv 196 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTV 196 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeE
Confidence 78899999999999998 899999861 12567888899999999999999999999999999
Q ss_pred EEEECCCCeEEEEeec--cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---eCCCCcEEEEEEcCCCCce
Q 005254 85 RVWDLSTLKCLRSWKG--HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF---KGHKGVVSSILFHPDTDKS 159 (706)
Q Consensus 85 ~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~ 159 (706)
+++|+......+.++. ...+|.++.|+|.|.+|++|.+-.++++||+.+-++.... .+|.+.|+++.+++.++.
T Consensus 197 KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~l- 275 (430)
T KOG0640|consen 197 KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSL- 275 (430)
T ss_pred EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccE-
Confidence 9999976544433332 4578999999999999999999999999999998876543 369999999999998765
Q ss_pred EEEEEecCCeEEEEECCCCeeEEEee-ccc-ceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeee
Q 005254 160 LLFSGSDDATVRVWDLLAKKCVATLD-KHF-SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 160 ~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
.++++.||.|++||--+++++.++. .|. ..|.+..|+.+|+++++.+.|..+++|.+.+++.+...
T Consensus 276 -YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 276 -YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred -EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 9999999999999999999998874 454 47999999999999999999999999999988877654
No 86
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=1.1e-28 Score=238.61 Aligned_cols=218 Identities=22% Similarity=0.322 Sum_probs=174.3
Q ss_pred CCCcccccceeeceeeeeeeec-cceEEcCCCCEEEEeeCC-eEEEEEccCCeEE-------------EeecCCCccEEE
Q 005254 1 MASLPLKKSYGCEPVLQQFYGG-GPLVVSSDGSFIACACGE-SINIVDLSNASIK-------------STIEGGSDTITA 65 (706)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~-------------~~l~~~~~~i~~ 65 (706)
|.....+-+|.....-...|.. .....++|+..++.+... ....|+...+..+ ..+.+|.+.|++
T Consensus 1 ~~~sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~ 80 (493)
T PTZ00421 1 MSVSRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIID 80 (493)
T ss_pred CCcccccccccccCCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEE
Confidence 5556666666666555555543 345566775555554444 4455654333221 247789999999
Q ss_pred EEEcc-CCCEEEEEeccCeEEEEECCCC-------eEEEEeeccCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCeE
Q 005254 66 LALSP-DDKLLFSSGHSREIRVWDLSTL-------KCLRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDVDGGFC 136 (706)
Q Consensus 66 l~~s~-~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~vw~~~~~~~ 136 (706)
++|+| ++++||+|+.|++|++||+.++ +++..+.+|...|.+++|+|++ .+|++++.|++|++||+++++.
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~ 160 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA 160 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE
Confidence 99999 8899999999999999999765 3567889999999999999985 6999999999999999999999
Q ss_pred EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccce-EEEEEEecCCCEEEEEe----CCCE
Q 005254 137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR-VTSMAITSDGSTLISAG----RDKV 211 (706)
Q Consensus 137 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~dg~ 211 (706)
+..+.+|...|.+++|+|++.. +++++.|+.|++||+++++.+..+.+|.+. ...+.|.+++..+++++ .|+.
T Consensus 161 ~~~l~~h~~~V~sla~spdG~l--Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 161 VEVIKCHSDQITSLEWNLDGSL--LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred EEEEcCCCCceEEEEEECCCCE--EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence 9999999999999999998876 999999999999999999999999888764 45677888888887765 4788
Q ss_pred EEEEeCCCC
Q 005254 212 VNLWDLRDY 220 (706)
Q Consensus 212 i~~w~~~~~ 220 (706)
|++||+++.
T Consensus 239 VklWDlr~~ 247 (493)
T PTZ00421 239 IMLWDTRKM 247 (493)
T ss_pred EEEEeCCCC
Confidence 999998754
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=8.4e-30 Score=221.62 Aligned_cols=280 Identities=20% Similarity=0.284 Sum_probs=244.5
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEE
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 434 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 434 (706)
.+..+...+. ...+.+++.|..+.++|..+++.+..++||...+..+. +.++... +++++.|..|++|........
T Consensus 221 gi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~--~~~~~~~-v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 221 GITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVK--FHKDLDT-VITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEE--eccchhh-eeecCCcceEEeeccccccCc
Confidence 3445555554 67899999999999999999999999999999999997 7776666 999999999999999988888
Q ss_pred EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe--ecCcceEEEEEcCCCCEEEEe
Q 005254 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLAVAPNDSLVCTG 512 (706)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~ 512 (706)
.....|..+|+.+..+|.|. ++++++.|++..+.|++.+. ...... ...-.+++.+|+|||.++.+|
T Consensus 297 ~~~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~----------~lt~vs~~~s~v~~ts~~fHpDgLifgtg 365 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGS----------QLTVVSDETSDVEYTSAAFHPDGLIFGTG 365 (506)
T ss_pred cccccccccceeeeeccCCc-EEEEecCCceEEEEEccCCc----------EEEEEeeccccceeEEeeEcCCceEEecc
Confidence 88899999999999999998 99999999999999998763 222222 233458999999999999999
Q ss_pred eCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-cCEEEEEEEeCCC
Q 005254 513 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTRGA 591 (706)
Q Consensus 513 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~ 591 (706)
..||.++|||+.++.....|.+|.++|..++|+.+|-+|+++++|+.|++||++..+..+++.-.. .++.++.|.+.|.
T Consensus 366 t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT 445 (506)
T ss_pred CCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCC
Confidence 999999999999999999999999999999999999999999999999999999888777776432 3699999999999
Q ss_pred EEEEEeCCCCEEEEECC--CCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 592 QIVSCGADGLVKLWTVR--TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 592 ~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
+|+.++.|=.|++++-. +..++..+..|.+..+.+.|..+.+++++++.|..++++.+
T Consensus 446 ~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 446 YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999888677776633 56678888899999999999999999999999999999865
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.7e-31 Score=228.56 Aligned_cols=285 Identities=24% Similarity=0.374 Sum_probs=237.1
Q ss_pred eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe--EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeE
Q 005254 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF--CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 170 (706)
+....+..|.+.+..+.|-++...|++|+.|..|++|++..++ .+..+.+..+.|+.+.|.+++.. +++.+.|+.+
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~--~iAas~d~~~ 243 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKH--VIAASNDKNL 243 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCce--EEeecCCCce
Confidence 3445677899999999999999999999999999999998776 67778888999999999998777 9999999999
Q ss_pred EEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccc
Q 005254 171 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250 (706)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (706)
++|++.+.+...++.+|.+.|+++.|......+++++.|.+|+.||+....+.+++...+...
T Consensus 244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cn----------------- 306 (459)
T KOG0288|consen 244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCN----------------- 306 (459)
T ss_pred eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccccc-----------------
Confidence 999999999999999999999999998877779999999999999998755544321111000
Q ss_pred ccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEE
Q 005254 251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (706)
T Consensus 307 -------------------------------------------------------------------------------- 306 (459)
T KOG0288|consen 307 -------------------------------------------------------------------------------- 306 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCC
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG 410 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 410 (706)
.|. ..
T Consensus 307 -------------------------------------------------------------------DI~-----~~--- 311 (459)
T KOG0288|consen 307 -------------------------------------------------------------------DIV-----CS--- 311 (459)
T ss_pred -------------------------------------------------------------------ceE-----ec---
Confidence 000 10
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 490 (706)
...+++|..|++|++||..+.........+. .|+++..++++. -+++++.|.++.+.|++... ....+
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~e----------I~~~~ 379 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKE----------IRQTF 379 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe-EEeeecCCCceeeeeccccc----------EEEEe
Confidence 1127888899999999999999888887665 999999999987 56677999999999998753 22222
Q ss_pred ee----cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCC--cEEEEEEccCCCEEEEecCCCcEEEE
Q 005254 491 AA----HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR--GIWSVEFSPVDQVVITASGDKTIKIW 563 (706)
Q Consensus 491 ~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iw 563 (706)
.+ .....+.+.|||++.|+++|+.||.|+||++.+++....+..... .|++++|+|.|..|++++.++.+.+|
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 11 234488999999999999999999999999999999888876444 59999999999999999999999999
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.6e-31 Score=227.98 Aligned_cols=282 Identities=23% Similarity=0.328 Sum_probs=241.0
Q ss_pred EecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce--eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEE
Q 005254 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (706)
.+..|.+.+..+.|.+ +...|++++.|..|.+|+....+ ....+.+..++++.++ +.++++. +++++.|+.+++
T Consensus 170 ~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d--~d~~~~~-~iAas~d~~~r~ 245 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSID--FDSDNKH-VIAASNDKNLRL 245 (459)
T ss_pred hhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceee--ecCCCce-EEeecCCCceee
Confidence 4455777888888876 66789999999999999998776 5667888899999999 9999998 888899999999
Q ss_pred EeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 426 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 426 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
|+....+...++.+|...|+++.|..... .+++|+.|.+|++||+.... +... .-....+..+..+
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~----------C~kt-~l~~S~cnDI~~~-- 311 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAY----------CSKT-VLPGSQCNDIVCS-- 311 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhh----------eecc-ccccccccceEec--
Confidence 99999999999999999999999988755 49999999999999998642 1111 1122334445554
Q ss_pred CCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeec----ccCE
Q 005254 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH----TSSV 581 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i 581 (706)
...+++|-.|+.|++||.++..+......+. .|+++..++++..|.+++.|.++.+.|+++.+....+... ....
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence 5568888899999999999999999988765 9999999999999999999999999999998888777642 2358
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED--KIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+.+.|||++.|+++|+.||.|+||++.++++...+..... .|+++.|+|.|..|++++.++.+.+|.
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 8999999999999999999999999999999888875443 599999999999999999999999994
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.5e-29 Score=245.19 Aligned_cols=218 Identities=19% Similarity=0.198 Sum_probs=185.7
Q ss_pred CCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCE
Q 005254 429 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 508 (706)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 508 (706)
+..+.+..+.+|...|..++|+|++. ++++++.|++|.+|+..+.. ....+.+|...|..+.|.|-|+|
T Consensus 117 E~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~----------~~~vl~~H~s~VKGvs~DP~Gky 185 (942)
T KOG0973|consen 117 ESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFE----------LLKVLRGHQSLVKGVSWDPIGKY 185 (942)
T ss_pred ceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccce----------eeeeeecccccccceEECCccCe
Confidence 34456667788999999999999987 99999999999999987653 78889999999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCccEEEEEeecC------CcEEEEEEccCCCEEEEecC----CCcEEEEEcCCCceEEEEeecc
Q 005254 509 VCTGSQDRTACVWRLPDLVSVVTFRGHK------RGIWSVEFSPVDQVVITASG----DKTIKIWSISDGSCLKTFEGHT 578 (706)
Q Consensus 509 l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~ 578 (706)
+|+-+.|++|++|++.+......+..+. .-...+.|||||++|++... -.++.|.+-.+.+.-..+-||.
T Consensus 186 ~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~ 265 (942)
T KOG0973|consen 186 FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHS 265 (942)
T ss_pred eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCC
Confidence 9999999999999988776666665543 24678999999999998643 3468999988888889999999
Q ss_pred cCEEEEEEEeC-----CC------------EEEEEeCCCCEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeC
Q 005254 579 SSVLRASFLTR-----GA------------QIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 579 ~~i~~~~~s~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~ 640 (706)
.++.++.|+|. .+ .+|+|+.|++|.||.....+++..+. -....|..++|+|||..|+.++.
T Consensus 266 ~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 266 APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEec
Confidence 99999999872 11 57899999999999998888876654 45678999999999999999999
Q ss_pred CCcEEEEECCchhHHHH
Q 005254 641 DALVNLWHDSTAAEREE 657 (706)
Q Consensus 641 dg~i~vw~~~~~~~~~~ 657 (706)
||+|.+..++..+.-..
T Consensus 346 DGtV~~i~Fee~ElG~~ 362 (942)
T KOG0973|consen 346 DGTVALIHFEEKELGVA 362 (942)
T ss_pred CCeEEEEEcchHHhCcc
Confidence 99999999987765443
No 91
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.6e-29 Score=245.10 Aligned_cols=293 Identities=20% Similarity=0.298 Sum_probs=228.6
Q ss_pred CCccEEEEEEccCCCEEEEEe--ccCeEEEEECCC------------CeEEEEeeccCCCeEEEEECCCCCEEEEecCCC
Q 005254 59 GSDTITALALSPDDKLLFSSG--HSREIRVWDLST------------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADR 124 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~s~~--~d~~i~iwd~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 124 (706)
+...|.++..+|||..+|+|+ .|+.++||+.+. .+.+.....|.+.|+|+.|+|||+|||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456799999999999999999 799999998752 345666778999999999999999999999999
Q ss_pred cEEEEECCC------------------CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec
Q 005254 125 KVLVWDVDG------------------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK 186 (706)
Q Consensus 125 ~i~vw~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 186 (706)
.|.||.... -+....+.+|...|..++|+|++.. +++++.|++|.+||..+.+.+..+.+
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~--lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL--LVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE--EEEecccceEEEEccccceeeeeeec
Confidence 999999872 1367788999999999999998765 99999999999999999999999999
Q ss_pred ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceE
Q 005254 187 HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 266 (706)
Q Consensus 187 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (706)
|.+.|..+.|.|-|+++++-+.|++|++|++.+....+.+..+..
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~----------------------------------- 214 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE----------------------------------- 214 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh-----------------------------------
Confidence 999999999999999999999999999999766444433321110
Q ss_pred EEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEe
Q 005254 267 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS 346 (706)
Q Consensus 267 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (706)
.......+..+.
T Consensus 215 ---------------------------------~~~~~T~f~RlS----------------------------------- 226 (942)
T KOG0973|consen 215 ---------------------------------ESPLTTFFLRLS----------------------------------- 226 (942)
T ss_pred ---------------------------------hCCCcceeeecc-----------------------------------
Confidence 000000011111
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEe----eCCCc
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG----SKDNS 422 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~----~~dg~ 422 (706)
++|++.+ |++. +.-.+
T Consensus 227 -----------------------------------------------------------WSPDG~~-las~nA~n~~~~~ 246 (942)
T KOG0973|consen 227 -----------------------------------------------------------WSPDGHH-LASPNAVNGGKST 246 (942)
T ss_pred -----------------------------------------------------------cCCCcCe-ecchhhccCCcce
Confidence 4455544 3322 11235
Q ss_pred EEEEeCCCceEEEEEeCCCcCeEEEEEecC--------CC--------eEEEEecCCCeEEEEEecCCCCCCCcccccce
Q 005254 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKK--------LQ--------NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA 486 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--------~~--------~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 486 (706)
+.|.+-.+.+.-..+-+|..++.+++|+|. |. ..+++|+.|++|.||......+ .
T Consensus 247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP---------l 317 (942)
T KOG0973|consen 247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP---------L 317 (942)
T ss_pred eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc---------h
Confidence 667777777777778899999999999872 11 2789999999999999754321 2
Q ss_pred eEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 005254 487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 525 (706)
.....-....|..++|+|||..|.+++.||+|.++.++.
T Consensus 318 ~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 318 FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 222333567899999999999999999999999998753
No 92
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=240.04 Aligned_cols=207 Identities=26% Similarity=0.413 Sum_probs=173.3
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeE
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 466 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 466 (706)
++...+.+|.+.|..+. + ..++. |++++.|.+|++|++....++..+. |...|+|++|+|...+++++|+-||.+
T Consensus 360 kP~~ef~GHt~DILDlS--W-SKn~f-LLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~Kv 434 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLS--W-SKNNF-LLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKV 434 (712)
T ss_pred cchhhhhccchhheecc--c-ccCCe-eEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccce
Confidence 45667889999999986 3 44444 9999999999999999999999886 999999999999888899999999999
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee--c------CCc
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--H------KRG 538 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~------~~~ 538 (706)
+||++... ..........-|++++|+|||++.++|+.+|.+++|+....+......- | ...
T Consensus 435 RiWsI~d~-----------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~r 503 (712)
T KOG0283|consen 435 RLWSISDK-----------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKR 503 (712)
T ss_pred EEeecCcC-----------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCce
Confidence 99999865 3333344457799999999999999999999999999988776655432 1 237
Q ss_pred EEEEEEccCC-CEEEEecCCCcEEEEEcCCCceEEEEeeccc--CEEEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 539 IWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 539 v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
|+.+.|.|.. ..+++.+.|..|||||.++..++..|+++.. .-....|+.||++|+++++|..|++|+...
T Consensus 504 ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 504 ITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred eeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 9999999844 3577778999999999988888888887543 345679999999999999999999999854
No 93
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=7.7e-28 Score=219.90 Aligned_cols=233 Identities=17% Similarity=0.254 Sum_probs=173.3
Q ss_pred eeCCCcEEEEeCCCceEEE--EE--eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee
Q 005254 417 GSKDNSVRLWDSESRCCVG--VG--TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~~~~~--~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 492 (706)
.+..|.|.||+++..-.+- .+ -.....|+.+.|.|-....|++++.||.|++|.+..+.... ........+..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e---~~~tPe~~lt~ 675 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE---NEMTPEKILTI 675 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc---ccCCcceeeec
Confidence 4667899999987532221 11 12456789999999777789999999999999998765322 12235567788
Q ss_pred cCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc-e
Q 005254 493 HGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS-C 570 (706)
Q Consensus 493 ~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~ 570 (706)
|...|+++.|+| -.+.|++++.|-+|++||+.+++....+.+|.+.|..++|||+|+.+|+.+.||+|++|+.++++ .
T Consensus 676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 999999999999 45789999999999999999999999999999999999999999999999999999999987764 3
Q ss_pred EEEEeecc-cCEEEEEEEeCCCEEEEEeCCC----CEEEEECCCC--eEEEEec--cCCCcEEEEEEcCCCC-EEEEEeC
Q 005254 571 LKTFEGHT-SSVLRASFLTRGAQIVSCGADG----LVKLWTVRTG--ECIATYD--KHEDKIWALAVGKKTE-MFATGGS 640 (706)
Q Consensus 571 ~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~--~~~~~~~--~~~~~v~~~~~s~~~~-~l~~~~~ 640 (706)
+.+-.+.. ..-..+.|..||+++++.+.|. .|.+||.++- .++.+.. .... +.--.+.+|.. ++++|-.
T Consensus 756 v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-~LvP~YD~Ds~~lfltGKG 834 (1012)
T KOG1445|consen 756 VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS-PLVPHYDYDSNVLFLTGKG 834 (1012)
T ss_pred cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc-cccccccCCCceEEEecCC
Confidence 44433322 2345678999999999888764 6788887643 2332221 1111 00112234444 5678888
Q ss_pred CCcEEEEECCchh
Q 005254 641 DALVNLWHDSTAA 653 (706)
Q Consensus 641 dg~i~vw~~~~~~ 653 (706)
|..|..|.+..+.
T Consensus 835 D~~v~~yEv~~es 847 (1012)
T KOG1445|consen 835 DRFVNMYEVIYES 847 (1012)
T ss_pred CceEEEEEecCCC
Confidence 9999999987654
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-29 Score=210.07 Aligned_cols=296 Identities=22% Similarity=0.373 Sum_probs=245.9
Q ss_pred EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 005254 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 131 (706)
+++.+.||...|..++.......+.+++.|.+.+||.+++|+++.++.+|.+.|++++|++.+.++++++.|++-.||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 45778899999999999988889999999999999999999999999999999999999999999999999999999972
Q ss_pred ------CC-----C-----------------------------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 132 ------DG-----G-----------------------------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 132 ------~~-----~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
.. + .++..+.+|.+.|.+..|...++. +++++.|.+-.
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q--~vTaSWDRTAn 297 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ--MVTASWDRTAN 297 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce--eeeeeccccce
Confidence 11 0 245678899999999999998888 99999999999
Q ss_pred EEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccc
Q 005254 172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY 251 (706)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (706)
+||+++++.+..+.+|....+.++-+|..+++++.+.|.+.++||++..-
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI------------------------------ 347 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI------------------------------ 347 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc------------------------------
Confidence 99999999999999999999999999999999999999999999986210
Q ss_pred cchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEE
Q 005254 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (706)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (706)
T Consensus 348 -------------------------------------------------------------------------------- 347 (481)
T KOG0300|consen 348 -------------------------------------------------------------------------------- 347 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCC
Q 005254 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK 411 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 411 (706)
..+..+++|...+++.. |.. +.
T Consensus 348 -------------------------------------------------------~sV~VFQGHtdtVTS~v--F~~-dd 369 (481)
T KOG0300|consen 348 -------------------------------------------------------QSVAVFQGHTDTVTSVV--FNT-DD 369 (481)
T ss_pred -------------------------------------------------------ceeeeecccccceeEEE--Eec-CC
Confidence 01125677888888775 444 34
Q ss_pred EEEEEeeCCCcEEEEeCCCce-EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE
Q 005254 412 ILIVTGSKDNSVRLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 490 (706)
. +++|++|.+|++||+.+.+ ++..+. ..+++..++++..++ +++.--.+..|++||++..... ..+....
T Consensus 370 ~-vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~Rla------RlPrtsR 440 (481)
T KOG0300|consen 370 R-VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRLA------RLPRTSR 440 (481)
T ss_pred c-eeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCc-eEEeccCCceEEEEecCCCccc------cCCcccc
Confidence 4 8999999999999998764 344433 567888899988766 7888888999999999875321 1133345
Q ss_pred eecCcceEEEEEcCCC--CEEEEeeCCCcEEEEeCCCc
Q 005254 491 AAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPDL 526 (706)
Q Consensus 491 ~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~ 526 (706)
.+|...|+|.+|..+- .-|++++.|..+.-|.+...
T Consensus 441 qgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 441 QGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 6788899999998643 35678888999999988654
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-28 Score=205.92 Aligned_cols=246 Identities=22% Similarity=0.347 Sum_probs=204.4
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCC--EEEEecCCCcEEEEE
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG--LLATAGADRKVLVWD 130 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~vw~ 130 (706)
+..+..|..+|+++|.+ +.|+|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|++||.|.+|+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 45667899999999998 99999999999999999999999999999999999999999775 899999999999999
Q ss_pred CCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC
Q 005254 131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK 210 (706)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 210 (706)
...-+++..+++|.+.|+.++.+|.++. .++.+.|+.++.||+-.|+.-..++-. ..-+.+.|+|.|.+++.++.++
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KL--ALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGKL--ALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCce--EEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEeccE
Confidence 9999999999999999999999998775 788899999999999988866555322 2334489999999888887655
Q ss_pred EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeec
Q 005254 211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290 (706)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 290 (706)
|-+|.+.+......+..+.
T Consensus 191 -i~i~q~d~A~v~~~i~~~~------------------------------------------------------------ 209 (362)
T KOG0294|consen 191 -IDIYQLDNASVFREIENPK------------------------------------------------------------ 209 (362)
T ss_pred -EEEEecccHhHhhhhhccc------------------------------------------------------------
Confidence 8888887655443332211
Q ss_pred cCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEE
Q 005254 291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA 370 (706)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 370 (706)
.+.++.| .++..++
T Consensus 210 ----------------------------------------------------------------r~l~~~~--l~~~~L~ 223 (362)
T KOG0294|consen 210 ----------------------------------------------------------------RILCATF--LDGSELL 223 (362)
T ss_pred ----------------------------------------------------------------cceeeee--cCCceEE
Confidence 1122222 3677888
Q ss_pred EEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 371 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 371 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
+|..++.+.+||..+..+...+.+|...|..+.....+++ .++++++.||.|++||++..
T Consensus 224 vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 224 VGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEcccc
Confidence 8888999999999998999999999999999875445555 45999999999999998865
No 96
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=4.5e-30 Score=213.25 Aligned_cols=251 Identities=21% Similarity=0.312 Sum_probs=207.2
Q ss_pred eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE--eCCCcCeEEEEEecCCCeEEEEecCCCeE
Q 005254 389 SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG--TGHMGAVGAVAFSKKLQNFLVSGSSDHTI 466 (706)
Q Consensus 389 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 466 (706)
++.+..|..+|.++. |.|.... |++|+.|++|++||+......+.+ -....+|.++.|+|.|. +|+.|.....+
T Consensus 165 IRTlYDH~devn~l~--FHPre~I-LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~ 240 (430)
T KOG0640|consen 165 IRTLYDHVDEVNDLD--FHPRETI-LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTL 240 (430)
T ss_pred EeehhhccCccccee--ecchhhe-EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCce
Confidence 446778999999998 8887776 999999999999999865433222 23567899999999998 89999999999
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee-cC-CcEEEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HK-RGIWSVEF 544 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~-~~v~~~~~ 544 (706)
++||+++..... .......|...|+++.+++.|++.++++.||.|++||--+++++.++.. |. ..|.+..|
T Consensus 241 rlYdv~T~Qcfv-------sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 241 RLYDVNTYQCFV-------SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF 313 (430)
T ss_pred eEEeccceeEee-------ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEE
Confidence 999998653111 1123456888999999999999999999999999999988888887754 54 46899999
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-----cCEEEEEEEeCCCEEEEEeC-CCCEEEEECCCCeEEEEec-
Q 005254 545 SPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYD- 617 (706)
Q Consensus 545 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~- 617 (706)
..+++++++.+.|..+++|.+.+++++.++.+.. .--+...|.....|++.-.+ .+.+.-||.+++..+..+.
T Consensus 314 tkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl 393 (430)
T KOG0640|consen 314 TKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL 393 (430)
T ss_pred ccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc
Confidence 9999999999999999999999999999987642 12345577777778776554 3679999999998776665
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 618 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
+|++.+..+.-||.+.-++|++.|-.+++|--.
T Consensus 394 gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 394 GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 999999999999999999999999999999643
No 97
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.4e-29 Score=223.80 Aligned_cols=209 Identities=15% Similarity=0.230 Sum_probs=169.6
Q ss_pred eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCc
Q 005254 438 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT 517 (706)
Q Consensus 438 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 517 (706)
++|...+++.+|+|..+..+++++.||++++|++...+.... ........+..-+++.++|++||+++|+|+.||.
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q----Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS 340 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ----VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS 340 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee----EEeeccCCCcccCceeeecCCCcchhhhcccCCc
Confidence 579999999999999999999999999999999987642111 0011112234457899999999999999999999
Q ss_pred EEEEeCCCcc---EEEEEeecCC--cEEEEEEccCCCEEEEecCCCcEEEEEcCCC-ceEEEEeec--ccCEEEEEEEeC
Q 005254 518 ACVWRLPDLV---SVVTFRGHKR--GIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGH--TSSVLRASFLTR 589 (706)
Q Consensus 518 i~i~d~~~~~---~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~--~~~i~~~~~s~~ 589 (706)
|.+|+..... ....-..|.. .|+++.||+||++|++-+.|+++++||++.. +++....+- ..+-+.++|||+
T Consensus 341 IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd 420 (641)
T KOG0772|consen 341 IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPD 420 (641)
T ss_pred eeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCC
Confidence 9999975442 2333445776 8999999999999999999999999999865 445554442 335678999999
Q ss_pred CCEEEEEeC------CCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 590 GAQIVSCGA------DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 590 ~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.++|++|+. .|.+.+||..+-+.+..+.-....|..+.|+|.-+.|+.++.||.+++|=-.
T Consensus 421 ~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 421 DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 999999864 4689999999999999998878889999999998889999999999987433
No 98
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.2e-30 Score=221.41 Aligned_cols=293 Identities=22% Similarity=0.405 Sum_probs=232.0
Q ss_pred EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEe
Q 005254 137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216 (706)
Q Consensus 137 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 216 (706)
+..+.+|...|.+++=+|.. ...+++|+.||.|++||+.+..+..++..|.+.|..+++.. ..+++++.|.+|+.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~-ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNK-LSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhhccccccccchhhcCcch-hhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 34567899999999999973 34599999999999999999999999999999999999987 5688888999999998
Q ss_pred CCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcccc
Q 005254 217 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 296 (706)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 296 (706)
+... ...++.
T Consensus 136 ~~~~-p~~til--------------------------------------------------------------------- 145 (433)
T KOG0268|consen 136 IDGP-PLHTIL--------------------------------------------------------------------- 145 (433)
T ss_pred ccCC-cceeee---------------------------------------------------------------------
Confidence 6531 000000
Q ss_pred ccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCC
Q 005254 297 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 376 (706)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 376 (706)
T Consensus 146 -------------------------------------------------------------------------------- 145 (433)
T KOG0268|consen 146 -------------------------------------------------------------------------------- 145 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeE
Q 005254 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 456 (706)
Q Consensus 377 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 456 (706)
....+..++ ....+.. +++++. .|.|||.....++..+.-....+.++.|+|....+
T Consensus 146 ------------------g~s~~~gId--h~~~~~~-FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsI 202 (433)
T KOG0268|consen 146 ------------------GKSVYLGID--HHRKNSV-FATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSI 202 (433)
T ss_pred ------------------ccccccccc--ccccccc-ccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchh
Confidence 000111111 1122222 677765 48999999999999999889999999999998889
Q ss_pred EEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc-cEEEEEeec
Q 005254 457 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGH 535 (706)
Q Consensus 457 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~ 535 (706)
|++++.|+.|.+||++...+.. ... ....-+.++|+|++-.+++|++|..++.||++.. .++....+|
T Consensus 203 Las~~sDrsIvLyD~R~~~Pl~---------KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh 271 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASPLK---------KVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH 271 (433)
T ss_pred eeeeccCCceEEEecccCCccc---------eee--eeccccceecCccccceeeccccccceehhhhhhcccchhhccc
Confidence 9999999999999998764211 111 1233478999998889999999999999999875 567788899
Q ss_pred CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee-cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE
Q 005254 536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614 (706)
Q Consensus 536 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 614 (706)
.+.|.+++|||.|+-+++|+.|.+|+||....+.....+.. ....|.++.||.|.+|+++|+.|+.|++|.....+.+.
T Consensus 272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 99999999999999999999999999999987765444321 23478999999999999999999999999987666554
Q ss_pred Ee
Q 005254 615 TY 616 (706)
Q Consensus 615 ~~ 616 (706)
.+
T Consensus 352 v~ 353 (433)
T KOG0268|consen 352 VI 353 (433)
T ss_pred CC
Confidence 43
No 99
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=223.67 Aligned_cols=303 Identities=20% Similarity=0.281 Sum_probs=233.3
Q ss_pred EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe----eEEEe-ecccceEEEEEEecCCCEEEEEeCCCEE
Q 005254 138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK----CVATL-DKHFSRVTSMAITSDGSTLISAGRDKVV 212 (706)
Q Consensus 138 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i 212 (706)
..+++|+..|.++++-|.|.+ +++|+.|.+|++||++... ..+.+ +.....|.++.|++.|..|++.+.....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR--~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGAR--FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred EeccCCceEEEEeeecCCCce--eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 456788999999999999988 9999999999999997542 22222 2344589999999999999988888888
Q ss_pred EEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccC
Q 005254 213 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292 (706)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 292 (706)
+++|-+..+.....
T Consensus 239 kl~DRdG~~~~e~~------------------------------------------------------------------ 252 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFS------------------------------------------------------------------ 252 (641)
T ss_pred eEEccCCceeeeee------------------------------------------------------------------
Confidence 88885432211110
Q ss_pred ccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEE
Q 005254 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372 (706)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 372 (706)
T Consensus 253 -------------------------------------------------------------------------------- 252 (641)
T KOG0772|consen 253 -------------------------------------------------------------------------------- 252 (641)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce-EEEEEe-----CCCcCeEE
Q 005254 373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-CVGVGT-----GHMGAVGA 446 (706)
Q Consensus 373 ~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-----~~~~~v~~ 446 (706)
.|.-+|-|+. ..++|...++|-. +.|..+..+++++.||++|+||+.+.+ .+..+. +..-+++.
T Consensus 253 --KGDQYI~Dm~------nTKGHia~lt~g~--whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 253 --KGDQYIRDMY------NTKGHIAELTCGC--WHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred --ccchhhhhhh------ccCCceeeeeccc--cccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence 0222222222 3356777777776 888888889999999999999987643 222222 34457889
Q ss_pred EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCc--ceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK--DINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
++|+++++ ++++|..||.|.+|+....... .......+|.. .|+|+.||+||++|++-+.|+++++||++
T Consensus 323 C~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~-------p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 323 CAWNRDGK-LIAAGCLDGSIQIWDKGSRTVR-------PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred eecCCCcc-hhhhcccCCceeeeecCCcccc-------cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 99999998 7999999999999998654321 13445566766 89999999999999999999999999998
Q ss_pred CccE-EEEEee--cCCcEEEEEEccCCCEEEEecC------CCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEE
Q 005254 525 DLVS-VVTFRG--HKRGIWSVEFSPVDQVVITASG------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS 595 (706)
Q Consensus 525 ~~~~-~~~~~~--~~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 595 (706)
..+. +....+ ...+-+.++|||+.++|++|.. .|.+.+||..+.+.+..+.-....|..+.|+|.-+.|+.
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~ 474 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFA 474 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheee
Confidence 7643 333333 2345678999999999999864 578999999999999998888889999999999999999
Q ss_pred EeCCCCEEEEE
Q 005254 596 CGADGLVKLWT 606 (706)
Q Consensus 596 ~~~dg~i~iwd 606 (706)
|+.||.++||=
T Consensus 475 gsgdG~~~vyY 485 (641)
T KOG0772|consen 475 GSGDGTAHVYY 485 (641)
T ss_pred ecCCCceEEEE
Confidence 99999999873
No 100
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1e-28 Score=214.97 Aligned_cols=205 Identities=26% Similarity=0.400 Sum_probs=186.9
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
++...|....+.+|+.+ .+.++|.++++.+..++||...|+.+.|+|+...+++++.|-.|+||.............|.
T Consensus 224 ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~ 303 (506)
T KOG0289|consen 224 ALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHE 303 (506)
T ss_pred EEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccc
Confidence 45666666888888888 89999999999999999999999999999999999999999999999999888888889999
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeC--CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 180 (706)
.+|+.+..+|.|.||++++.|+...+.|++++..+..... ..-.+++.+|+|||- ++.+|..||.|++||+.++..
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL--ifgtgt~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL--IFGTGTPDGVVKIWDLKSQTN 381 (506)
T ss_pred ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce--EEeccCCCceEEEEEcCCccc
Confidence 9999999999999999999999999999999998877653 234589999999875 499999999999999999999
Q ss_pred EEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcc
Q 005254 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 181 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 230 (706)
+..|.+|.++|..++|+.+|.+|++++.|+.|++||++..+..++++..+
T Consensus 382 ~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 382 VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence 99999999999999999999999999999999999999888777666544
No 101
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=9.4e-29 Score=228.34 Aligned_cols=286 Identities=23% Similarity=0.372 Sum_probs=245.1
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceee--EeeeCCcceEEEeeeeeecCCCEEEEEeeCCC
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--YVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 421 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg 421 (706)
.....+.+|...+..++.. ++..++.++.||++++|+-...+.. ..+.+|.+.+.+- .|+.+..+..+++|+.|.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~--~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~-i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVT--DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANS-ICYAESDKGRLVVGGMDT 81 (745)
T ss_pred eeEEEeccCccchheeEec--CCeEEeecCCCCceeeeeccCcccccceecccCcceeecc-ceeccccCcceEeecccc
Confidence 4557788899999888865 4457899999999999998765544 3466677766652 225544444599999999
Q ss_pred cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEE
Q 005254 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (706)
++.+|...+..++..+.+|...|.++....++. +++|+.|.++++|.... ......+|...|.+++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~------------l~~~l~gH~asVWAv~ 147 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE------------LVYSLQGHTASVWAVA 147 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCc--eEecccccceEEecchh------------hhcccCCcchheeeee
Confidence 999999999999999999999999999888865 99999999999998764 4455889999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCE
Q 005254 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581 (706)
Q Consensus 502 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 581 (706)
.-|++ .+++|+.|.+|++|.- ++.++++.+|.+.|..+++-+++ .+++++.||.|+.|++ +++++.++.+|..-+
T Consensus 148 ~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~v 222 (745)
T KOG0301|consen 148 SLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFV 222 (745)
T ss_pred ecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEE
Confidence 99988 8899999999999984 78899999999999999999865 4788999999999999 899999999999999
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhH
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 654 (706)
.++....++..++++++|++++||+.. ++.+.+......|+++.+-++|. +++|+.||.|+||.......
T Consensus 223 Ysis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 223 YSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 999988888999999999999999875 88888877777999999988886 67789999999999885543
No 102
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=5e-28 Score=221.13 Aligned_cols=176 Identities=19% Similarity=0.296 Sum_probs=136.8
Q ss_pred cCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCc-------cEEEEE
Q 005254 461 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-------VSVVTF 532 (706)
Q Consensus 461 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~ 532 (706)
+..|.|-||+++.....+... .....++..|+.+.|.| |...|+++++||.|++|.+..+ .+...+
T Consensus 600 g~gG~iai~el~~PGrLPDgv------~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l 673 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGV------MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL 673 (1012)
T ss_pred CCCceEEEEEcCCCCCCCccc------ccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee
Confidence 345667777776543221111 11122456789999999 7889999999999999998654 456678
Q ss_pred eecCCcEEEEEEccC-CCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe
Q 005254 533 RGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611 (706)
Q Consensus 533 ~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 611 (706)
..|...|+++.|+|- ...|++++.|-+|++||+.+++....+.+|.+.|..++|||||+.+++.+.||+|++|+.++++
T Consensus 674 t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 674 TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 889999999999994 5678999999999999999999999999999999999999999999999999999999998775
Q ss_pred -EEEEeccCC-CcEEEEEEcCCCCEEEEEeCCC
Q 005254 612 -CIATYDKHE-DKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 612 -~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg 642 (706)
++..-++.. ..--.+.|.-||+++++.|.|.
T Consensus 754 ~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 754 QPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred CccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 344333221 1223466777899888777663
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.2e-28 Score=201.71 Aligned_cols=289 Identities=15% Similarity=0.234 Sum_probs=233.6
Q ss_pred eeEEEeeCCceEEEEeeecc-----ccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee
Q 005254 318 GLLCVTADQQLLLYTTVEVP-----EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL 392 (706)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~ 392 (706)
.+++++....++-+.+...+ .....+.+.-....|.+.+.+++. ++.++++|+.|.+|++||+........+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcce
Confidence 46778888888888777665 223344455566788899999998 6789999999999999999999999999
Q ss_pred eCCcceEEEeeeeeecCCC--EEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 393 AGHSEIVLCLDTCALSSGK--ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
-.|.+.++++. |.++.. + |++|+.||.|.+|+.....++..+++|.+.|+.++++|.++ +.++.+.|+.+++|+
T Consensus 80 l~HagsitaL~--F~~~~S~sh-LlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WN 155 (362)
T KOG0294|consen 80 LSHAGSITALK--FYPPLSKSH-LLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWN 155 (362)
T ss_pred eccccceEEEE--ecCCcchhh-eeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeeh
Confidence 99999999998 666553 5 89999999999999999999999999999999999999998 889999999999999
Q ss_pred ecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCE
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV 550 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 550 (706)
+-.+.... ...-....+.+.|+|.|.+++.+..+ .|-+|.+.+......+... ..+.++.|. ++..
T Consensus 156 LV~Gr~a~-----------v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~ 221 (362)
T KOG0294|consen 156 LVRGRVAF-----------VLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSE 221 (362)
T ss_pred hhcCccce-----------eeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCce
Confidence 98774221 11222334559999999999888875 4999998877666655532 456777776 4778
Q ss_pred EEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEE--EeCCCEEEEEeCCCCEEEEECCCC-----eEEEEeccCCCcE
Q 005254 551 VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF--LTRGAQIVSCGADGLVKLWTVRTG-----ECIATYDKHEDKI 623 (706)
Q Consensus 551 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v 623 (706)
|++|+.|+.|.+||..+..+...+.+|..+|..+.+ .|++.+|++++.||.|+|||++.. +++..+.. ...+
T Consensus 222 L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~Rl 300 (362)
T KOG0294|consen 222 LLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRL 300 (362)
T ss_pred EEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCcc
Confidence 999999999999999999999999999999999985 356789999999999999999865 34444433 3444
Q ss_pred EEEEE
Q 005254 624 WALAV 628 (706)
Q Consensus 624 ~~~~~ 628 (706)
+|+..
T Consensus 301 tCl~~ 305 (362)
T KOG0294|consen 301 TCLRV 305 (362)
T ss_pred ceeee
Confidence 55443
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.4e-30 Score=232.99 Aligned_cols=362 Identities=21% Similarity=0.316 Sum_probs=276.7
Q ss_pred EEEEC-CCCCEEEEecCCCcEEEEECCCCe------EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC-
Q 005254 107 GMACH-PSGGLLATAGADRKVLVWDVDGGF------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK- 178 (706)
Q Consensus 107 ~~~~s-~~~~~l~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~- 178 (706)
.+..+ |.++||.+||.||.|++|++..-. .+..+..|...|..++...+++. +++++.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~t--lIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKT--LISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCc--eEEecCCceEEEeecccCc
Confidence 34444 366789999999999999985432 35677889999999999988877 999999999999999887
Q ss_pred -eeEEEeecccceEEEEEE-ecCCCEEEEEeCCCEEEEEeCCCCcc--eeeecCcceeeeEEeeCCCCCcccccccccch
Q 005254 179 -KCVATLDKHFSRVTSMAI-TSDGSTLISAGRDKVVNLWDLRDYSC--KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQ 254 (706)
Q Consensus 179 -~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (706)
-+..++..|...|.|+++ .++...+++||-|+.|.+||+.++.. +...
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~---------------------------- 158 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASF---------------------------- 158 (735)
T ss_pred chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhc----------------------------
Confidence 577888999999999999 78888999999999999999986532 0000
Q ss_pred hhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEee
Q 005254 255 TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 334 (706)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 334 (706)
T Consensus 159 -------------------------------------------------------------------------------- 158 (735)
T KOG0308|consen 159 -------------------------------------------------------------------------------- 158 (735)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEE
Q 005254 335 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI 414 (706)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 414 (706)
..+..-+ ...++...+++++ ..+.+ .++
T Consensus 159 -----------------------------------------n~~t~~s--------l~sG~k~siYSLA--~N~t~-t~i 186 (735)
T KOG0308|consen 159 -----------------------------------------NNVTVNS--------LGSGPKDSIYSLA--MNQTG-TII 186 (735)
T ss_pred -----------------------------------------ccccccc--------CCCCCccceeeee--cCCcc-eEE
Confidence 0000000 1115666777776 54555 459
Q ss_pred EEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecC
Q 005254 415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494 (706)
Q Consensus 415 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (706)
++|+.++.+++||..+++.+..+.+|...|..+..+++|. .+++++.||+|++||+.... +...+..|.
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgqQr----------Cl~T~~vH~ 255 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQQR----------CLATYIVHK 255 (735)
T ss_pred EecCcccceEEeccccccceeeeeccccceEEEEEcCCCC-eEeecCCCceEEeeeccccc----------eeeeEEecc
Confidence 9999999999999999999999999999999999999998 89999999999999998654 777888999
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEE
Q 005254 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574 (706)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 574 (706)
..+.++..+|+-..+++|+.||.|..=|+.+......+-....+|..+..+.+.+-+-+++.|+.|+-|..+-.
T Consensus 256 e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~------ 329 (735)
T KOG0308|consen 256 EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD------ 329 (735)
T ss_pred CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc------
Confidence 99999999999999999999999999999986444444446677888888766665677788999999976421
Q ss_pred eecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhH
Q 005254 575 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 575 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 654 (706)
..+++.+++.. -+.|....+.+... .+-..+.| .-+|..-+.-.|.++++|-...|.+.+||+-....
T Consensus 330 ---------~~l~~s~~~~~-~~T~~~~~~~~~~~-tp~~vi~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~ 397 (735)
T KOG0308|consen 330 ---------IALSVSGDLDF-FSTDSNNHSCDLTN-TPDSVIPG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVK 397 (735)
T ss_pred ---------cccccCCCCCc-ccccCCCccccccC-CCceeccC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeee
Confidence 14445555544 33444445554321 22233333 22455555667899999999999999999988766
Q ss_pred HHHHH
Q 005254 655 REEAF 659 (706)
Q Consensus 655 ~~~~~ 659 (706)
.+..-
T Consensus 398 ~~d~g 402 (735)
T KOG0308|consen 398 VEDFG 402 (735)
T ss_pred hhhcc
Confidence 55443
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.1e-28 Score=201.78 Aligned_cols=277 Identities=19% Similarity=0.344 Sum_probs=206.5
Q ss_pred CCCccEEEEEEccC-CCEEEEEeccCeEEEEECCC-CeEE-EEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC
Q 005254 58 GGSDTITALALSPD-DKLLFSSGHSREIRVWDLST-LKCL-RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG 134 (706)
Q Consensus 58 ~~~~~i~~l~~s~~-~~~l~s~~~d~~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 134 (706)
...+.|.+|+|||. ..++++++-||+|++|+++. |..+ .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 45679999999994 45556778899999999987 3433 334558999999999999999999999999999999999
Q ss_pred eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEE
Q 005254 135 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 214 (706)
Q Consensus 135 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 214 (706)
+ +..+..|.++|.++.|.+......|++|+.|.+|++||.+...++.++. -...+.++..- ...++++..++.|.+
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEE
Confidence 5 5566779999999999988777789999999999999999999888875 34566666553 347888889999999
Q ss_pred EeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcc
Q 005254 215 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 294 (706)
Q Consensus 215 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 294 (706)
|+++.+........
T Consensus 181 ynL~n~~te~k~~~------------------------------------------------------------------ 194 (347)
T KOG0647|consen 181 YNLENPPTEFKRIE------------------------------------------------------------------ 194 (347)
T ss_pred EEcCCCcchhhhhc------------------------------------------------------------------
Confidence 99975432111000
Q ss_pred ccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEec
Q 005254 295 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN 374 (706)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 374 (706)
....-.+.+++...+. +..+.|+-
T Consensus 195 -------------------------------------------------------SpLk~Q~R~va~f~d~-~~~alGsi 218 (347)
T KOG0647|consen 195 -------------------------------------------------------SPLKWQTRCVACFQDK-DGFALGSI 218 (347)
T ss_pred -------------------------------------------------------CcccceeeEEEEEecC-CceEeeee
Confidence 0001122233333322 22356666
Q ss_pred CCcEEEEeCCCc--eeeEeeeCCcc---------eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcC
Q 005254 375 IEQVQVYDLSSM--SCSYVLAGHSE---------IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 443 (706)
Q Consensus 375 ~~~i~~~d~~~~--~~~~~~~~~~~---------~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 443 (706)
+|.+.+..+..+ +.-..++.|.. .|..++ |.|..+. |++++.||++.+||-.....+...+.|..+
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~--FhP~hgt-lvTaGsDGtf~FWDkdar~kLk~s~~~~qp 295 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA--FHPVHGT-LVTAGSDGTFSFWDKDARTKLKTSETHPQP 295 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE--eecccce-EEEecCCceEEEecchhhhhhhccCcCCCc
Confidence 666666666554 33344554442 345555 7887777 999999999999999998888888999999
Q ss_pred eEEEEEecCCCeEEEEecCC
Q 005254 444 VGAVAFSKKLQNFLVSGSSD 463 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d 463 (706)
|++.+|+.+|..+..+.+.|
T Consensus 296 Itcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 296 ITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred cceeEecCCCCEEEEEeecc
Confidence 99999999999655555544
No 106
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.5e-26 Score=220.66 Aligned_cols=479 Identities=18% Similarity=0.254 Sum_probs=312.4
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCC---CEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDD---KLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
.-+||+|++++....++.|.||...++.++..+.+|..+++.+.+.|.. .++.+++.+|.|++||...+.++.++..
T Consensus 21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred ccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 6789999999999999999999999999999999999999999999865 4677999999999999999888877653
Q ss_pred cCCCeE-----------------------------------------------------------EEEECCCCCEEEEec
Q 005254 101 HDGPAI-----------------------------------------------------------GMACHPSGGLLATAG 121 (706)
Q Consensus 101 ~~~~v~-----------------------------------------------------------~~~~s~~~~~l~~~~ 121 (706)
+ .++. ++.+++.|.+.+..-
T Consensus 101 ~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~ 179 (792)
T KOG1963|consen 101 N-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH 179 (792)
T ss_pred C-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE
Confidence 2 1121 222222222222221
Q ss_pred CCCcEEEEECCCCeEEEE----eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC----CeeEEEeecccceEEE
Q 005254 122 ADRKVLVWDVDGGFCTHY----FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA----KKCVATLDKHFSRVTS 193 (706)
Q Consensus 122 ~d~~i~vw~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~ 193 (706)
+..+.+|+...+..... -..|...+++.++||+++. +++|..||.|.+|.--. ....+.+..|...|.+
T Consensus 180 -~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~--~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 180 -MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERY--LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred -eeeEEEEEecccceeeccchhhhhhcccceeEEeccccce--EEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence 23466666665431110 1247777999999998876 99999999999996422 2234567889999999
Q ss_pred EEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCC
Q 005254 194 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 273 (706)
Q Consensus 194 ~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (706)
++|+++|.+|++||.+|.+.+|.+.+++...-.....++..+.+++++. ......+|
T Consensus 257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~-----------------------~~sl~~~D 313 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSD-----------------------LYSLVLED 313 (792)
T ss_pred eEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCC-----------------------eEEEEecC
Confidence 9999999999999999999999999999555555677888999998886 55566678
Q ss_pred CeEEEEECCCCeEEeeccCccccccc-cCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEeccc
Q 005254 274 GIVRMWNADSACLYEQKSSDVTISFE-MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352 (706)
Q Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (706)
..|.+....+..+....+........ ......-.+.+.+.|..+.++..+..+.+.+|++...... .++...
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i-~~~~v~------ 386 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI-YKLQVC------ 386 (792)
T ss_pred ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee-eeEEEE------
Confidence 88888877555332222211111011 1222334456667776667777777777777776654321 000000
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee--------C--CCc
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--------K--DNS 422 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~--------~--dg~ 422 (706)
.-.+.+ +. + .+...++.+. ..-.+.+ ++|.. . .-.
T Consensus 387 -----~~n~~~--~~--------~-----------------n~~v~itav~--~~~~gs~-maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 387 -----DENYSD--GD--------V-----------------NIQVGITAVA--RSRFGSW-MATLEARIDKFNFFDGEVS 431 (792)
T ss_pred -----eecccC--Cc--------c-----------------eeEEeeeeeh--hhccceE-EEEeeeeehhhhccCceEE
Confidence 000000 00 0 0011112221 2222222 33321 2 235
Q ss_pred EEEEeCCCceEE-----EEEeCCCcCeEEEEEecCCCe-EEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcc
Q 005254 423 VRLWDSESRCCV-----GVGTGHMGAVGAVAFSKKLQN-FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496 (706)
Q Consensus 423 i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (706)
+++|-......- ....+|...+.+.++.+..+. ..++++.||.+++|-+...+........+.+...-.-|..+
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~ 511 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP 511 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc
Confidence 677865543221 223467777777666654443 79999999999999997776655555566666666668999
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEeCCC-ccEEEEEeecCCcEEEEEEccCC--CEEEEecCCCcEEEEEcCCCceEE
Q 005254 497 INSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVD--QVVITASGDKTIKIWSISDGSCLK 572 (706)
Q Consensus 497 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~ 572 (706)
+++++|+.||..|+++ .++.|.+||..+ .+..........++..+.+.... ...+.......+.+|++.+.....
T Consensus 512 i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 512 ITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhheec
Confidence 9999999999776665 578999999988 44433333333344444443211 123334456779999987776654
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2e-26 Score=182.63 Aligned_cols=300 Identities=25% Similarity=0.363 Sum_probs=232.5
Q ss_pred EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC---------------eEEEEeeccCCCeEEEEECCCCCEEE
Q 005254 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL---------------KCLRSWKGHDGPAIGMACHPSGGLLA 118 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~v~~~~~s~~~~~l~ 118 (706)
..|+ .+..|.+++|+|.|.+.|+|+...+++|--...- .....-+.|.+.|.|.+|||+|++||
T Consensus 27 ~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 27 NILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIA 105 (350)
T ss_pred EEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEE
Confidence 3443 5778999999999999999999999988754321 11123356899999999999999999
Q ss_pred EecCCCcEEEEECCCCeEE-----EEeeCCCCcEEEEEEcCC--CCceEEEEEe-cCCeEEEEECCCCeeEEEeecccce
Q 005254 119 TAGADRKVLVWDVDGGFCT-----HYFKGHKGVVSSILFHPD--TDKSLLFSGS-DDATVRVWDLLAKKCVATLDKHFSR 190 (706)
Q Consensus 119 ~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~v~~~~~~~~--~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~ 190 (706)
+|+.|.+|++.-.....+. ..+.-|.+.|..++|..+ ....+|++++ .|..|++-|-..|+..+.+.+|.+.
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh 185 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH 185 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence 9999999998776543221 345669999999999643 3445666654 5778888899999999999999999
Q ss_pred EEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEe
Q 005254 191 VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV 270 (706)
Q Consensus 191 v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (706)
|.++ ++=+|-.+++|+.|.+|++||++-..++..+.....
T Consensus 186 ilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~--------------------------------------- 225 (350)
T KOG0641|consen 186 ILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH--------------------------------------- 225 (350)
T ss_pred EEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCccc---------------------------------------
Confidence 9887 444677899999999999999875444333211000
Q ss_pred cCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEec
Q 005254 271 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV 350 (706)
Q Consensus 271 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (706)
T Consensus 226 -------------------------------------------------------------------------------- 225 (350)
T KOG0641|consen 226 -------------------------------------------------------------------------------- 225 (350)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
+ + --....+.++. ..|.++. +++|..|....+||++.
T Consensus 226 --------------~----------~----------------glessavaav~--vdpsgrl-l~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 226 --------------D----------G----------------GLESSAVAAVA--VDPSGRL-LASGHADSSCMLYDIRG 262 (350)
T ss_pred --------------C----------C----------------CcccceeEEEE--ECCCcce-eeeccCCCceEEEEeeC
Confidence 0 0 00112344443 6676766 99999999999999999
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
++.++.+..|...|.++.|+|... ++++++.|..|++-|++..- ...........|...+..+.|.|..--++
T Consensus 263 ~r~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdl------a~el~~~vv~ehkdk~i~~rwh~~d~sfi 335 (350)
T KOG0641|consen 263 GRMIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDL------AHELPIMVVAEHKDKAIQCRWHPQDFSFI 335 (350)
T ss_pred CceeeeeCCCccceeEEEeCCCce-EEEEecccceEEEeecccch------hhcCceEEEEeccCceEEEEecCccceee
Confidence 999999999999999999999865 99999999999999997642 12224556777888899999999998899
Q ss_pred EeeCCCcEEEEeCC
Q 005254 511 TGSQDRTACVWRLP 524 (706)
Q Consensus 511 ~~~~dg~i~i~d~~ 524 (706)
+.+.|.++.+|-+.
T Consensus 336 sssadkt~tlwa~~ 349 (350)
T KOG0641|consen 336 SSSADKTATLWALN 349 (350)
T ss_pred eccCcceEEEeccC
Confidence 99999999999764
No 108
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.6e-27 Score=229.00 Aligned_cols=165 Identities=25% Similarity=0.335 Sum_probs=138.2
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEE-------------EEeeccCCCeEEEEECC-CCCEEEEecCCCc
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL-------------RSWKGHDGPAIGMACHP-SGGLLATAGADRK 125 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~ 125 (706)
-..|.....++|+..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 345666667777766777777777777776544322 14678999999999999 8899999999999
Q ss_pred EEEEECCCC-------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEec
Q 005254 126 VLVWDVDGG-------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS 198 (706)
Q Consensus 126 i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 198 (706)
|++||+.++ +.+..+.+|...|.+++|+|++. .+|++++.|+.|++||+++++.+..+..|...|.+++|+|
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 999999765 35677889999999999999753 3599999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCEEEEEeCCCCcceee
Q 005254 199 DGSTLISAGRDKVVNLWDLRDYSCKLT 225 (706)
Q Consensus 199 ~~~~l~~~~~dg~i~~w~~~~~~~~~~ 225 (706)
+|.+|++++.|+.|++||+++++.+..
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEE
Confidence 999999999999999999988765443
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2e-28 Score=215.44 Aligned_cols=293 Identities=20% Similarity=0.315 Sum_probs=224.9
Q ss_pred cCeEEEEECCCCeEEEEeeccCC-CeEEEEECCCCCEEEEec-CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCc
Q 005254 81 SREIRVWDLSTLKCLRSWKGHDG-PAIGMACHPSGGLLATAG-ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK 158 (706)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 158 (706)
..++.+||+.+|....++++... .-.++..- .+.|++++. ....|.+|.+..........--.++|.+++-+|+|..
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~ 95 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYF 95 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceE
Confidence 34599999999999999886522 11122111 235666664 4567999999776655533446788999999998765
Q ss_pred eEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEee
Q 005254 159 SLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 238 (706)
Q Consensus 159 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 238 (706)
++.|+..|.|++|.+.+|..+..+..|...|+|+.|+.||.++++++.||.|.+|.+.+
T Consensus 96 --l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------------------- 154 (476)
T KOG0646|consen 96 --LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------------------- 154 (476)
T ss_pred --EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe-------------------
Confidence 88888999999999999999999999999999999999999999999999999998631
Q ss_pred CCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCe
Q 005254 239 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQG 318 (706)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (706)
T Consensus 155 -------------------------------------------------------------------------------- 154 (476)
T KOG0646|consen 155 -------------------------------------------------------------------------------- 154 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcce
Q 005254 319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI 398 (706)
Q Consensus 319 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 398 (706)
T Consensus 155 -------------------------------------------------------------------------------- 154 (476)
T KOG0646|consen 155 -------------------------------------------------------------------------------- 154 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC-CeEEEEecCCCeEEEEEecCCCCC
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDD 477 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~ 477 (706)
++.+..++ +.+++..+..|.-+|+.+...+.+ ..++++++.|.++++||+..+
T Consensus 155 ---------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g--- 208 (476)
T KOG0646|consen 155 ---------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG--- 208 (476)
T ss_pred ---------------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---
Confidence 00000010 111222233444444444444331 237999999999999999876
Q ss_pred CCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC----------------ccEEEEEeecCC--cE
Q 005254 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD----------------LVSVVTFRGHKR--GI 539 (706)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------------~~~~~~~~~~~~--~v 539 (706)
...........+.+++++|-++.+.+|+.+|.|.+.++.. +..+..+.+|.+ +|
T Consensus 209 --------~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 209 --------VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI 280 (476)
T ss_pred --------eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence 3333445677899999999999999999999999987643 234566778888 99
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeC
Q 005254 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 589 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 589 (706)
+|++.+-||..|++|+.||.++|||+.+.++++++....++|+.+.+.|-
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 99999999999999999999999999999999998867889999999664
No 110
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=215.76 Aligned_cols=302 Identities=15% Similarity=0.259 Sum_probs=237.7
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
+....+.+|.+.|.+++-.|..-..+++|+.||.|++||+.+..+...+..|.+.|.++. +.. .. +++++.|.+|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~--v~~--~~-~~tvgdDKtv 131 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGIC--VTQ--TS-FFTVGDDKTV 131 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEE--ecc--cc-eEEecCCcce
Confidence 445566889999999999887778999999999999999999999999999999999997 333 33 8999999999
Q ss_pred EEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 424 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 424 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
+.|-+... .+.++. ..+.+..+.-+..+. .+++++. .|.|||..... +...+.-....|.++.|+
T Consensus 132 K~wk~~~~-p~~til-g~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R~~----------Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 132 KQWKIDGP-PLHTIL-GKSVYLGIDHHRKNS-VFATCGE--QIDIWDEQRDN----------PVSSMSWGADSISSVKFN 196 (433)
T ss_pred eeeeccCC-cceeee-ccccccccccccccc-cccccCc--eeeecccccCC----------ccceeecCCCceeEEecC
Confidence 99987763 333333 233444555444433 5777765 48999987653 444455555678999999
Q ss_pred CCC-CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC-ceEEEEeecccCE
Q 005254 504 PND-SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSV 581 (706)
Q Consensus 504 ~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i 581 (706)
|.. ..|+++..|+.|.+||++++.++..+. -...-..++|+|.+-.+.++++|..++.||++.. .++....+|.+.|
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV 275 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV 275 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeE
Confidence 965 567777799999999999998877655 2344577999998778899999999999999765 5678888999999
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHHHH
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFR 660 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 660 (706)
..+.|||.|+-+++|+.|.+|+||....+..-..+. ..-..|.++.||.|.+++++|+.|+.|++|+....+.......
T Consensus 276 ~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~ 355 (433)
T KOG0268|consen 276 MDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVITP 355 (433)
T ss_pred EEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCCh
Confidence 999999999999999999999999998776543332 2234689999999999999999999999999776554443333
Q ss_pred HHHHHH
Q 005254 661 KEEEAV 666 (706)
Q Consensus 661 ~~~~~~ 666 (706)
.+....
T Consensus 356 rEk~~~ 361 (433)
T KOG0268|consen 356 REKNKL 361 (433)
T ss_pred hHHHHH
Confidence 333333
No 111
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.4e-27 Score=231.41 Aligned_cols=235 Identities=16% Similarity=0.258 Sum_probs=190.6
Q ss_pred EeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCc
Q 005254 416 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (706)
Q Consensus 416 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (706)
.|+.++.+++|+......+..+.+|.+.|.+++|+|+...+|++|+.|+.|++|++......... .......+.+|..
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~--i~~p~~~L~gH~~ 126 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE--IKDPQCILKGHKK 126 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc--cccceEEeecCCC
Confidence 35668899999988888888899999999999999985559999999999999999754211100 0113345678999
Q ss_pred ceEEEEEcCCCCE-EEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEE
Q 005254 496 DINSLAVAPNDSL-VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574 (706)
Q Consensus 496 ~i~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 574 (706)
.|.+++|+|++.. |++++.|+.|++||+.+++....+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+.++
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 9999999999875 5789999999999999998877776 6678999999999999999999999999999999999999
Q ss_pred eecccCEEEE-----EEEeCCCEEEEEeCCC----CEEEEECCC-CeEEEEec--cCCCcEEEEEEcCCCCEEEEEeCCC
Q 005254 575 EGHTSSVLRA-----SFLTRGAQIVSCGADG----LVKLWTVRT-GECIATYD--KHEDKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 575 ~~~~~~i~~~-----~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg 642 (706)
.+|.+.+... .|++++.+|++++.|+ .|++||+++ ++++..+. .+.+.+......+++.++++|+.|+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 9998765433 3458889999988774 799999985 56665543 3444444555566788999999999
Q ss_pred cEEEEECCchh
Q 005254 643 LVNLWHDSTAA 653 (706)
Q Consensus 643 ~i~vw~~~~~~ 653 (706)
.|++|++..+.
T Consensus 286 tIr~~e~~~~~ 296 (568)
T PTZ00420 286 NCRYYQHSLGS 296 (568)
T ss_pred eEEEEEccCCc
Confidence 99999997663
No 112
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.6e-28 Score=200.91 Aligned_cols=201 Identities=18% Similarity=0.310 Sum_probs=158.8
Q ss_pred CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEE
Q 005254 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519 (706)
Q Consensus 440 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 519 (706)
|...+-.+-....+. ++++++.|..|.+|++... ...........-...++||+|+++++++..-.|+
T Consensus 186 h~v~~i~iGiA~~~k-~imsas~dt~i~lw~lkGq-----------~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVk 253 (420)
T KOG2096|consen 186 HQVDIINIGIAGNAK-YIMSASLDTKICLWDLKGQ-----------LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVK 253 (420)
T ss_pred cccceEEEeecCCce-EEEEecCCCcEEEEecCCc-----------eeeeeccccccccceeeCCCCcEEEEecCCCCce
Confidence 455565666666655 9999999999999999843 4444444555567789999999999999999999
Q ss_pred EEeCC--------CccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC-------CceEEEEe----ecccC
Q 005254 520 VWRLP--------DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD-------GSCLKTFE----GHTSS 580 (706)
Q Consensus 520 i~d~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~----~~~~~ 580 (706)
+|.+- .-.....+++|...|..++|+++...+++.+.||+++|||++- .+.+++.. ...+.
T Consensus 254 VwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~ 333 (420)
T KOG2096|consen 254 VWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE 333 (420)
T ss_pred EEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence 99863 2244567899999999999999999999999999999999742 22233321 12334
Q ss_pred EEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhH
Q 005254 581 VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 581 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 654 (706)
...+.++|+|+.||... ...++++..++|+....++ .|...|.+|+|+++|++++|+| |..+++..-.++-.
T Consensus 334 p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg~~ 406 (420)
T KOG2096|consen 334 PVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPGWH 406 (420)
T ss_pred ceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCchh
Confidence 55899999999888754 4679999999999887776 7999999999999999999987 77889887555543
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5e-28 Score=200.57 Aligned_cols=275 Identities=25% Similarity=0.345 Sum_probs=214.0
Q ss_pred CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC-CeeE-EEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-KKCV-ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 142 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
.....|.+++|||. ...++++++.||+||+|+++. +... +....|.++|.+++|+.||..+++++.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~-~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQ-ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccc-cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 46778999999994 445677999999999999986 3332 34567899999999999999999999999999999976
Q ss_pred CcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccc
Q 005254 220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 299 (706)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 299 (706)
++..
T Consensus 104 ~Q~~---------------------------------------------------------------------------- 107 (347)
T KOG0647|consen 104 GQVS---------------------------------------------------------------------------- 107 (347)
T ss_pred CCee----------------------------------------------------------------------------
Confidence 5422
Q ss_pred cCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEE
Q 005254 300 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379 (706)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 379 (706)
T Consensus 108 -------------------------------------------------------------------------------- 107 (347)
T KOG0647|consen 108 -------------------------------------------------------------------------------- 107 (347)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEE
Q 005254 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459 (706)
Q Consensus 380 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 459 (706)
.+..|.+++.++.+..... ...|++|+.|.+|+.||.+...++..+.. .+.+.++..-.. +++.
T Consensus 108 -----------~v~~Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~p---m~vV 171 (347)
T KOG0647|consen 108 -----------QVAAHDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLYP---MAVV 171 (347)
T ss_pred -----------eeeecccceeEEEEecCCC-cceeEecccccceeecccCCCCeeeeeec-cceeeehhccCc---eeEE
Confidence 2223444454444222122 23499999999999999998888877653 356666665544 7899
Q ss_pred ecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc--cEEEEEeecCC
Q 005254 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKR 537 (706)
Q Consensus 460 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~ 537 (706)
+..+..|.+|++++...+ .........-.++|++..+|....+.|+-+|.+.|..+..+ +.-..|+.|..
T Consensus 172 ata~r~i~vynL~n~~te--------~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~ 243 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTE--------FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS 243 (347)
T ss_pred EecCCcEEEEEcCCCcch--------hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc
Confidence 999999999999765321 11222224456889999999888899999999999998876 44455666652
Q ss_pred ---------cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEe
Q 005254 538 ---------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 597 (706)
Q Consensus 538 ---------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 597 (706)
.|.+++|+|....|++++.||++..||-.....+++.+.|..+|++..|+.+|.++|.+.
T Consensus 244 ~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 244 TNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred CCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 578899999999999999999999999888888888888999999999999999887653
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-28 Score=204.11 Aligned_cols=332 Identities=23% Similarity=0.384 Sum_probs=251.1
Q ss_pred eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEE
Q 005254 135 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 214 (706)
Q Consensus 135 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 214 (706)
+++..+.+|...|+.++-... ..++.+++.|.+-+||.+++++++.++.+|.+.|+++.|++.+.++++++.|++-.+
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~t--qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADST--QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eehhhhcccccceeeehhhcC--CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 345667899999999987653 446899999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcc
Q 005254 215 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 294 (706)
Q Consensus 215 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 294 (706)
|...-.-.+.....+... +...
T Consensus 217 W~~av~~~vP~~~a~~~h-----SsEe----------------------------------------------------- 238 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDH-----SSEE----------------------------------------------------- 238 (481)
T ss_pred HHHhhcCcCCCCCCCCCC-----Cchh-----------------------------------------------------
Confidence 984321100000000000 0000
Q ss_pred ccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEec
Q 005254 295 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN 374 (706)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 374 (706)
....+.+..... ++. ..+.
T Consensus 239 -----------------------------------------------------E~e~sDe~~~d~-----d~~---~~sD 257 (481)
T KOG0300|consen 239 -----------------------------------------------------EEEHSDEHNRDT-----DSS---EKSD 257 (481)
T ss_pred -----------------------------------------------------hhhccccccccc-----ccc---cccC
Confidence 000000000000 000 0000
Q ss_pred CCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCC
Q 005254 375 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 375 ~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (706)
...|+ .++..+.+|...+.+.+ +...++. +++++.|.+-.+||.++++.+..+.+|....+.++-+|..+
T Consensus 258 ~~tiR-------vPl~~ltgH~~vV~a~d--WL~gg~Q-~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr 327 (481)
T KOG0300|consen 258 GHTIR-------VPLMRLTGHRAVVSACD--WLAGGQQ-MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQR 327 (481)
T ss_pred Cceee-------eeeeeeeccccceEehh--hhcCcce-eeeeeccccceeeeeccCceeccccCcchhccccccCCcce
Confidence 01111 23447788999998888 6666666 99999999999999999999999999999999999999965
Q ss_pred eEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc-EEEEEe
Q 005254 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFR 533 (706)
Q Consensus 455 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~ 533 (706)
++++.+.|.+.++||++.. ......+.+|...|++..|..+. .+++|+.|.+|++||+++.. ++.+++
T Consensus 328 -LVvTsSrDtTFRLWDFRea---------I~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR 396 (481)
T KOG0300|consen 328 -LVVTSSRDTTFRLWDFREA---------IQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR 396 (481)
T ss_pred -EEEEeccCceeEeccchhh---------cceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee
Confidence 9999999999999999842 33678899999999999998765 68899999999999999874 455555
Q ss_pred ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE-----EeecccCEEEEEEEeCC--CEEEEEeCCCCEEEEE
Q 005254 534 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-----FEGHTSSVLRASFLTRG--AQIVSCGADGLVKLWT 606 (706)
Q Consensus 534 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~iwd 606 (706)
...++..++.+..+..++.--.+..|++||++ |..+.. -.+|..-|++++|..+- .-|++++.|..+.-|+
T Consensus 397 -tdS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 397 -TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred -cCCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence 56789999999988899999999999999996 443333 34788899999998653 3589999999999999
Q ss_pred CCCC
Q 005254 607 VRTG 610 (706)
Q Consensus 607 ~~~~ 610 (706)
+...
T Consensus 475 in~p 478 (481)
T KOG0300|consen 475 INTP 478 (481)
T ss_pred eccc
Confidence 8653
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.5e-28 Score=212.28 Aligned_cols=294 Identities=26% Similarity=0.377 Sum_probs=229.7
Q ss_pred EEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE----E------------e--eCCCCcEEEEEEcCCC
Q 005254 95 LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH----Y------------F--KGHKGVVSSILFHPDT 156 (706)
Q Consensus 95 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~----~------------~--~~~~~~v~~~~~~~~~ 156 (706)
...+..|.-++.+++++||+++.++++.+++|.=|++.+++... . . +.|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 55667799999999999999999999999999999998876331 1 0 2688889999999998
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEE
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 236 (706)
++ +++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....|++++.|+.+++|+++....+
T Consensus 215 ky--latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v------------- 279 (479)
T KOG0299|consen 215 KY--LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV------------- 279 (479)
T ss_pred cE--EEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH-------------
Confidence 87 999999999999999999999999999999999999988889999999999999997643322
Q ss_pred eeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCC
Q 005254 237 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN 316 (706)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T Consensus 280 -------------------------------------------------------------------------------- 279 (479)
T KOG0299|consen 280 -------------------------------------------------------------------------------- 279 (479)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCc
Q 005254 317 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS 396 (706)
Q Consensus 317 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~ 396 (706)
..+.+|.
T Consensus 280 -------------------------------------------------------------------------etlyGHq 286 (479)
T KOG0299|consen 280 -------------------------------------------------------------------------ETLYGHQ 286 (479)
T ss_pred -------------------------------------------------------------------------HHHhCCc
Confidence 1455677
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCC
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 476 (706)
..|..++ .....+. +.+|+.|+++++|++... ....+.++.+.+-+++|-.+. .+++|+.+|.|.+|++...++
T Consensus 287 d~v~~Id--aL~reR~-vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 287 DGVLGID--ALSRERC-VTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred cceeeec--hhcccce-EEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCc
Confidence 7777776 5555554 777789999999999543 333567788899999998875 599999999999999987653
Q ss_pred CCCcccccceeE--EEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc----cEEEEEeecCCcEEEEEEccCCCE
Q 005254 477 DAEQPMNLKAKA--VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----VSVVTFRGHKRGIWSVEFSPVDQV 550 (706)
Q Consensus 477 ~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~s~~~~~ 550 (706)
............ ....++..|++++..|..+++++|+.+|.|++|-+.++ .++..+. -.+-|++++|+++|++
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKR 439 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCE
Confidence 222111111111 11123358999999999999999999999999999877 3444444 5678999999999997
Q ss_pred EEEe-cCCCcEEEE
Q 005254 551 VITA-SGDKTIKIW 563 (706)
Q Consensus 551 l~~~-~~dg~i~iw 563 (706)
+++| +....+--|
T Consensus 440 ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 440 IVAGIGKEHRLGRW 453 (479)
T ss_pred EEEeccccccccee
Confidence 6665 334333333
No 116
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.3e-28 Score=214.75 Aligned_cols=256 Identities=20% Similarity=0.360 Sum_probs=215.9
Q ss_pred eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE----------EEEEeCCCcCeEEEEEecCCCeEEEEec
Q 005254 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC----------VGVGTGHMGAVGAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 392 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 461 (706)
.-.|.+.|..+. ..|.+..++++++..+.+.|||..+... -..+.+|...-.+++|++.....|++++
T Consensus 120 ~i~h~gEVnRaR--ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~ 197 (422)
T KOG0264|consen 120 KINHDGEVNRAR--YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS 197 (422)
T ss_pred eccCCccchhhh--hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence 345788888887 8899999899999999999999865321 1256788887888999999888999999
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCC--CccEEEEEeecCCc
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLP--DLVSVVTFRGHKRG 538 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~ 538 (706)
.|++|.+||+...... .........+.+|...|..++|++ +..++++++.|+.+.|||++ +.++.....+|..+
T Consensus 198 ~d~~i~lwdi~~~~~~---~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 198 DDHTICLWDINAESKE---DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred CCCcEEEEeccccccC---CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence 9999999999876543 223446778899999999999999 55788899999999999999 56777778899999
Q ss_pred EEEEEEcc-CCCEEEEecCCCcEEEEEcCCC-ceEEEEeecccCEEEEEEEeCC-CEEEEEeCCCCEEEEECCC------
Q 005254 539 IWSVEFSP-VDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRT------ 609 (706)
Q Consensus 539 v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~------ 609 (706)
|.+++|+| ++..||+|+.|++|++||+++. +++.++.+|...|.++.|||+. ..||+++.|+.+.|||+..
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 99999999 4567899999999999999876 4688999999999999999965 4789999999999999963
Q ss_pred --------CeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCcEEEEECCch
Q 005254 610 --------GECIATYDKHEDKIWALAVGKKTEM-FATGGSDALVNLWHDSTA 652 (706)
Q Consensus 610 --------~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~ 652 (706)
.+++..-.||...|..+.|+|+..+ |+++++|+.+.||+....
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 1245566699999999999999886 568899999999998743
No 117
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.1e-27 Score=200.05 Aligned_cols=315 Identities=21% Similarity=0.288 Sum_probs=227.0
Q ss_pred eEEEEEccCCeEE-----EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEE--EEe--eccCCCeEEEEEC
Q 005254 41 SINIVDLSNASIK-----STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL--RSW--KGHDGPAIGMACH 111 (706)
Q Consensus 41 ~i~i~d~~~~~~~-----~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~--~~~~~~v~~~~~s 111 (706)
.+.-|+.+..... ..|++|.+.|++++||.||++||+++.|+.|+||++...... +.+ .-.-+..+.++|+
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFA 141 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEEC
Confidence 3666776665543 467899999999999999999999999999999999864321 111 1122356789999
Q ss_pred CCCCEEEEe-cCCCcEEEEECCC---CeEEE---------EeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 112 PSGGLLATA-GADRKVLVWDVDG---GFCTH---------YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 112 ~~~~~l~~~-~~d~~i~vw~~~~---~~~~~---------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
||.+-+++. -...++++|.+.. |.... .-+.|+-.+..+-... ...++++++.|..|.+|++. |
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~--~~k~imsas~dt~i~lw~lk-G 218 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG--NAKYIMSASLDTKICLWDLK-G 218 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC--CceEEEEecCCCcEEEEecC-C
Confidence 998866554 4556799998743 22111 1123555666665554 44569999999999999997 9
Q ss_pred eeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhc
Q 005254 179 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 258 (706)
Q Consensus 179 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (706)
+.+..+......-+..+.+|+|+++++++..-.|++|.+-
T Consensus 219 q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~---------------------------------------- 258 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPI---------------------------------------- 258 (420)
T ss_pred ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEE----------------------------------------
Confidence 9998887777777888999999999999988888888631
Q ss_pred cccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccc
Q 005254 259 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE 338 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 338 (706)
T Consensus 259 -------------------------------------------------------------------------------- 258 (420)
T KOG2096|consen 259 -------------------------------------------------------------------------------- 258 (420)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee
Q 005254 339 KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS 418 (706)
Q Consensus 339 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 418 (706)
|..++
T Consensus 259 -------------------------------------------------------------------f~kdG-------- 263 (420)
T KOG2096|consen 259 -------------------------------------------------------------------FTKDG-------- 263 (420)
T ss_pred -------------------------------------------------------------------eccCc--------
Confidence 00001
Q ss_pred CCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccccee-EEEeecCcce
Q 005254 419 KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK-AVVAAHGKDI 497 (706)
Q Consensus 419 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i 497 (706)
++ ..-..+..+++|...|...+|+++.. .+++.+.||++++||.+-.....+.+..++.. ..+....+..
T Consensus 264 ---~f-----qev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p 334 (420)
T KOG2096|consen 264 ---TF-----QEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEP 334 (420)
T ss_pred ---ch-----hhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCc
Confidence 00 00111234568889999999999976 89999999999999987543333333332222 2223334445
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee-cCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 498 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 498 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
..+.++|+|+.|+.+. ...+++|..++++....+.. |...|.+++|+++|+++++++ |..+++..
T Consensus 335 ~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 335 VRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred eEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 5899999999998765 45799999999877766654 999999999999999999986 55677765
No 118
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.2e-29 Score=227.69 Aligned_cols=291 Identities=18% Similarity=0.318 Sum_probs=236.7
Q ss_pred eeEeCCCCcEEEEEecCCcEEEEeCCCce------eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc-
Q 005254 359 LKFLGEEEQYLAVATNIEQVQVYDLSSMS------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR- 431 (706)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~- 431 (706)
+....+++++|.+++.||.|++|+..... ....++.|...+..+. ...+++. +++++.|-+|.+|+...+
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDii--L~~~~~t-lIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDII--LCGNGKT-LISASSDTTVKVWNAHKDN 106 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHH--hhcCCCc-eEEecCCceEEEeecccCc
Confidence 33445678899999999999999987533 3556788999988887 4455555 999999999999999877
Q ss_pred -eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE-eecCcceEEEEEcCCCCEE
Q 005254 432 -CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLV 509 (706)
Q Consensus 432 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l 509 (706)
-+...+..|...|.++++-.....++++|+-|+.|.+||++.+........+......+ .++..+|.+++.++.|..+
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i 186 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII 186 (735)
T ss_pred chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence 56777889999999999944445599999999999999999774311111111122222 2788899999999999999
Q ss_pred EEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeC
Q 005254 510 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 589 (706)
Q Consensus 510 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 589 (706)
++|+..+.+++||.++.+.+..+++|...|..+..++||..+++++.||+|++||+.-.+|+.++..|...+.++..+|+
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~s 266 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPS 266 (735)
T ss_pred EecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 590 GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 590 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
-..+.+|+.||.|..=|+.+......+-....+|..+..+.+.+-+-++..|+.|+-|.....
T Consensus 267 f~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 267 FTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred cceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 999999999999999999985433333233456666666644444466677888888876543
No 119
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.7e-26 Score=179.08 Aligned_cols=289 Identities=24% Similarity=0.382 Sum_probs=223.6
Q ss_pred EEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC------CCe---------EEEEeeCCCCcEEEEEEcCCCCce
Q 005254 95 LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD------GGF---------CTHYFKGHKGVVSSILFHPDTDKS 159 (706)
Q Consensus 95 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~------~~~---------~~~~~~~~~~~v~~~~~~~~~~~~ 159 (706)
+..+. .+..|.+++|.|.|.+.|+|+...+++|--.. .+. ..+.-+.|.+.|.|.+|+|+|+.
T Consensus 26 i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel- 103 (350)
T KOG0641|consen 26 INILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL- 103 (350)
T ss_pred EEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe-
Confidence 33344 56789999999999999999998888876542 111 11233568999999999999886
Q ss_pred EEEEEecCCeEEEEECCCCeeE-----EEeecccceEEEEEEecC----CCEEEEEeCCCEEEEEeCCCCcceeeecCcc
Q 005254 160 LLFSGSDDATVRVWDLLAKKCV-----ATLDKHFSRVTSMAITSD----GSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 160 ~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 230 (706)
+++|+.|.+|++.-.+...+. ..+.-|.+.|..++|..+ +..|++++.
T Consensus 104 -iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga---------------------- 160 (350)
T KOG0641|consen 104 -IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA---------------------- 160 (350)
T ss_pred -EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC----------------------
Confidence 999999999999765443321 234557777777777543 223333321
Q ss_pred eeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEE
Q 005254 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAA 310 (706)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (706)
T Consensus 161 -------------------------------------------------------------------------------- 160 (350)
T KOG0641|consen 161 -------------------------------------------------------------------------------- 160 (350)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeE
Q 005254 311 TVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY 390 (706)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~ 390 (706)
.|..|++-|...++...
T Consensus 161 ---------------------------------------------------------------gdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 161 ---------------------------------------------------------------GDCKIYITDCGRGQGFH 177 (350)
T ss_pred ---------------------------------------------------------------CcceEEEeecCCCCcce
Confidence 22344455555566666
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-------CCcCeEEEEEecCCCeEEEEecCC
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-------HMGAVGAVAFSKKLQNFLVSGSSD 463 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~d 463 (706)
.+.+|.+.|.++ ++-++-. +++|+.|.+|++||++-..++..+.. ..+.|.++++.|.|+ +|++|-.|
T Consensus 178 a~sghtghilal---yswn~~m-~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~d 252 (350)
T KOG0641|consen 178 ALSGHTGHILAL---YSWNGAM-FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHAD 252 (350)
T ss_pred eecCCcccEEEE---EEecCcE-EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCC
Confidence 778888888777 4444544 99999999999999998888876542 246799999999998 99999999
Q ss_pred CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc----cEEEEEeecCCcE
Q 005254 464 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----VSVVTFRGHKRGI 539 (706)
Q Consensus 464 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v 539 (706)
....+||++.+. ....+..|...|.|+.|+|...++++++.|..|++-|+... -++.....|...+
T Consensus 253 ssc~lydirg~r----------~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 253 SSCMLYDIRGGR----------MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKA 322 (350)
T ss_pred CceEEEEeeCCc----------eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCce
Confidence 999999999875 67788899999999999999999999999999999998642 3445566799999
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 540 WSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 323 i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 323 IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecCccceeeeccCcceEEEeccC
Confidence 999999999889999999999999764
No 120
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=6.6e-27 Score=226.74 Aligned_cols=248 Identities=15% Similarity=0.196 Sum_probs=195.6
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce--------EEEEEeCCCcC
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC--------CVGVGTGHMGA 443 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~ 443 (706)
|+..+.+.+|+.........+.+|...|.+++ ++|....+|++|+.|+.|++||+.++. .+..+.+|...
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~la--fsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQ--FNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEE--EcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 34457899999888888888999999999998 888755559999999999999997642 34467789999
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 523 (706)
|.+++|+|++..++++++.|++|++||+.... ....+ .+...|.+++|+|+|.+|++++.|+.|++||+
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~----------~~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK----------RAFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCc----------EEEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEEC
Confidence 99999999988778899999999999998653 22222 25578999999999999999999999999999
Q ss_pred CCccEEEEEeecCCcEEE-----EEEccCCCEEEEecCCC----cEEEEEcCC-CceEEEEee--cccCEEEEEEEeCCC
Q 005254 524 PDLVSVVTFRGHKRGIWS-----VEFSPVDQVVITASGDK----TIKIWSISD-GSCLKTFEG--HTSSVLRASFLTRGA 591 (706)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~--~~~~i~~~~~s~~~~ 591 (706)
++++.+..+.+|.+.+.. ..|++++.+|++++.|+ +|+|||+++ .+++..+.. +.+.+......++|.
T Consensus 197 Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 197 RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL 276 (568)
T ss_pred CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence 999999999999876543 33568889999988764 799999985 556655442 223333344455688
Q ss_pred EEEEEeCCCCEEEEECCCCeEEEEec--cCCCcEEEEEEcCCCC
Q 005254 592 QIVSCGADGLVKLWTVRTGECIATYD--KHEDKIWALAVGKKTE 633 (706)
Q Consensus 592 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~ 633 (706)
++++|+.|+.|++|++..+.. ..+. .+..++.+++|.|...
T Consensus 277 l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 277 IYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccccc
Confidence 999999999999999987753 2222 3567788899988643
No 121
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=3.8e-27 Score=217.83 Aligned_cols=283 Identities=23% Similarity=0.392 Sum_probs=239.7
Q ss_pred CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEE--EEeeccCCCeEE-EEECC-CCCEEEEecCCCc
Q 005254 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL--RSWKGHDGPAIG-MACHP-SGGLLATAGADRK 125 (706)
Q Consensus 50 ~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~-~~~s~-~~~~l~~~~~d~~ 125 (706)
-++.+.+.||...|..+++.+.. .+++++.||++++|+-...+.+ +.+.+|.+.|.. +++-+ ++.+|++|+.|..
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 45678899999999999977665 7889999999999997665543 456778887777 88886 5557999999999
Q ss_pred EEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEE
Q 005254 126 VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLIS 205 (706)
Q Consensus 126 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 205 (706)
|.+|...+..++..+++|+..|.+++...++. +++|+.|.++++|.. +++...+++|...|+++...|++ .+++
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vT 156 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVT 156 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc---eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEe
Confidence 99999999999999999999999999776654 899999999999974 66667799999999999999988 7999
Q ss_pred EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCe
Q 005254 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 285 (706)
Q Consensus 206 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 285 (706)
|+.|..|++|.-.+ .
T Consensus 157 gsaDKtIklWk~~~--~--------------------------------------------------------------- 171 (745)
T KOG0301|consen 157 GSADKTIKLWKGGT--L--------------------------------------------------------------- 171 (745)
T ss_pred ccCcceeeeccCCc--h---------------------------------------------------------------
Confidence 99999999997532 1
Q ss_pred EEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCC
Q 005254 286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE 365 (706)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 365 (706)
.+.+.+|...|..+++.+
T Consensus 172 ------------------------------------------------------------l~tf~gHtD~VRgL~vl~-- 189 (745)
T KOG0301|consen 172 ------------------------------------------------------------LKTFSGHTDCVRGLAVLD-- 189 (745)
T ss_pred ------------------------------------------------------------hhhhccchhheeeeEEec--
Confidence 134456777777787774
Q ss_pred CcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeE
Q 005254 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG 445 (706)
Q Consensus 366 ~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 445 (706)
+..++++++||.|+.|++ +++++..+.+|...+.+++ ..++++. ++++++|+++++|+.. .+.+.+....-.+.
T Consensus 190 ~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis--~~~~~~~-Ivs~gEDrtlriW~~~--e~~q~I~lPttsiW 263 (745)
T KOG0301|consen 190 DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS--MALSDGL-IVSTGEDRTLRIWKKD--ECVQVITLPTTSIW 263 (745)
T ss_pred CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEE--ecCCCCe-EEEecCCceEEEeecC--ceEEEEecCccceE
Confidence 446888999999999999 7888889999999999998 6677776 9999999999999977 77777777777999
Q ss_pred EEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
++.+-++|. +++|+.||.|++|.....
T Consensus 264 sa~~L~NgD--Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 264 SAKVLLNGD--IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEEEeeCCC--EEEeccCceEEEEEeccc
Confidence 999999987 999999999999988754
No 122
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=3.9e-26 Score=190.28 Aligned_cols=270 Identities=22% Similarity=0.323 Sum_probs=201.9
Q ss_pred CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Q 005254 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH 138 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~ 138 (706)
....|+++.|+|.+..|++++-||.+++||+....+...++ |..++.+++|.++ ..+++|+.||.|+.+|+.++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCccee
Confidence 36789999999999999999999999999999987777777 8999999999984 578899999999999999887544
Q ss_pred EeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCC
Q 005254 139 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 218 (706)
Q Consensus 139 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 218 (706)
+..|...|.++.+++.... +++|+.|++|++||.+.......+.. ...|.++.. .|..|++|+.+..+.+||++
T Consensus 90 -igth~~~i~ci~~~~~~~~--vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYEVGC--VISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred -eccCCCceEEEEeeccCCe--EEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcc
Confidence 4569999999999986665 99999999999999987655555543 347887766 46689999999999999998
Q ss_pred CCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcccccc
Q 005254 219 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 298 (706)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 298 (706)
+.....+....
T Consensus 164 n~~~~~q~reS--------------------------------------------------------------------- 174 (323)
T KOG1036|consen 164 NLDEPFQRRES--------------------------------------------------------------------- 174 (323)
T ss_pred cccchhhhccc---------------------------------------------------------------------
Confidence 76533211000
Q ss_pred ccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcE
Q 005254 299 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 378 (706)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 378 (706)
.-.-.+.+++..|++..+++++-+|++
T Consensus 175 ---~lkyqtR~v~~~pn~eGy~~sSieGRV-------------------------------------------------- 201 (323)
T KOG1036|consen 175 ---SLKYQTRCVALVPNGEGYVVSSIEGRV-------------------------------------------------- 201 (323)
T ss_pred ---cceeEEEEEEEecCCCceEEEeecceE--------------------------------------------------
Confidence 001112333344444444444444444
Q ss_pred EEEeCCCc----eeeEeeeCCc---------ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeE
Q 005254 379 QVYDLSSM----SCSYVLAGHS---------EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG 445 (706)
Q Consensus 379 ~~~d~~~~----~~~~~~~~~~---------~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 445 (706)
.+=.++.. +....++.|. -+|.+++ |+|-.+. |++|+.||.|.+||+.+.+.+..+......|.
T Consensus 202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~--Fhp~~~t-faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~ 278 (323)
T KOG1036|consen 202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA--FHPIHGT-FATGGSDGIVNIWDLFNRKRLKQLAKYETSIS 278 (323)
T ss_pred EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE--eccccce-EEecCCCceEEEccCcchhhhhhccCCCCceE
Confidence 33322222 2222333332 2567777 7777666 99999999999999999999999888888899
Q ss_pred EEEEecCCCeEEEEecC
Q 005254 446 AVAFSKKLQNFLVSGSS 462 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~ 462 (706)
+++|+.+|. .|+.++.
T Consensus 279 slsfs~dG~-~LAia~s 294 (323)
T KOG1036|consen 279 SLSFSMDGS-LLAIASS 294 (323)
T ss_pred EEEeccCCC-eEEEEec
Confidence 999999998 6776653
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.1e-26 Score=204.52 Aligned_cols=269 Identities=22% Similarity=0.269 Sum_probs=222.7
Q ss_pred CcEEEEeCCCceeeEeeeCC-cceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCC
Q 005254 376 EQVQVYDLSSMSCSYVLAGH-SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (706)
..+.+||+.++.....+++. ...-.++. .-...+++++-.....+.+|.+..........--.+++.+++-+|.|.
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~---~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~ 94 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLT---ALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGY 94 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhh---hhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCce
Confidence 45899999999988888776 22222221 122345455555666899999887665554444568899999999987
Q ss_pred eEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC---------C
Q 005254 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP---------D 525 (706)
Q Consensus 455 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~---------~ 525 (706)
+|+.|+..|.|++|.+.++. ....+.+|-..|+|+.|+.||.++++|+.||.|.+|.+. +
T Consensus 95 -~l~ag~i~g~lYlWelssG~----------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 95 -FLLAGTISGNLYLWELSSGI----------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred -EEEeecccCcEEEEEecccc----------HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence 78888899999999999875 556668899999999999999999999999999999863 3
Q ss_pred ccEEEEEeecCCcEEEEEEccC--CCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEE
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPV--DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK 603 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 603 (706)
.+++..+..|.-+|+++...+. ..+|++++.|.++++||+..+.++.++. ....+.+++.+|-++.+.+|+++|.|.
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIF 242 (476)
T ss_pred ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEE
Confidence 4678889999999999998875 4689999999999999999999998887 567899999999999999999999999
Q ss_pred EEECCC----------------CeEEEEeccCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHHH
Q 005254 604 LWTVRT----------------GECIATYDKHED--KIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAF 659 (706)
Q Consensus 604 iwd~~~----------------~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 659 (706)
+.++.. +..+..+.+|.+ .|+|++++-||..|++|+.||.++|||+.+-+......
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 887743 335666778988 99999999999999999999999999999887766554
No 124
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.7e-26 Score=189.84 Aligned_cols=229 Identities=21% Similarity=0.333 Sum_probs=181.9
Q ss_pred cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 352 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
+..++.+++|. +...+++++.||.|+.+|+.++... .+..|..++.|+. ..+..+. +++|+.|++|++||....
T Consensus 53 ~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~--~~~~~~~-vIsgsWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 53 HGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIE--YSYEVGC-VISGSWDKTIKFWDPRNK 126 (323)
T ss_pred cCCceeeeecc--CCceEEEeccCceEEEEEecCCcce-eeccCCCceEEEE--eeccCCe-EEEcccCccEEEEecccc
Confidence 34556666665 3567777888888888888776654 5677999999998 6666666 999999999999999875
Q ss_pred eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE
Q 005254 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (706)
.....+. ....|.++....+ .|++|+.+..+.+||++...... .......+-.+.|+++-|++.-.++
T Consensus 127 ~~~~~~d-~~kkVy~~~v~g~---~LvVg~~~r~v~iyDLRn~~~~~--------q~reS~lkyqtR~v~~~pn~eGy~~ 194 (323)
T KOG1036|consen 127 VVVGTFD-QGKKVYCMDVSGN---RLVVGTSDRKVLIYDLRNLDEPF--------QRRESSLKYQTRCVALVPNGEGYVV 194 (323)
T ss_pred ccccccc-cCceEEEEeccCC---EEEEeecCceEEEEEcccccchh--------hhccccceeEEEEEEEecCCCceEE
Confidence 5554444 3347888887765 79999999999999998764322 1112233456899999999888999
Q ss_pred eeCCCcEEEEeCCCc----cEEEEEeecC---------CcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc
Q 005254 512 GSQDRTACVWRLPDL----VSVVTFRGHK---------RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578 (706)
Q Consensus 512 ~~~dg~i~i~d~~~~----~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 578 (706)
++-||.|.+=.+... +....|+.|. .+|.+++|+|-.+.|+||+.||.|.+||+.+.+.+..+....
T Consensus 195 sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~ 274 (323)
T KOG1036|consen 195 SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE 274 (323)
T ss_pred EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC
Confidence 999999998777665 4555677665 379999999999999999999999999999999999998777
Q ss_pred cCEEEEEEEeCCCEEEEEeC
Q 005254 579 SSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 579 ~~i~~~~~s~~~~~l~~~~~ 598 (706)
..|..++|+.+|..||+++.
T Consensus 275 ~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 275 TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CceEEEEeccCCCeEEEEec
Confidence 78999999999999999875
No 125
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.6e-27 Score=189.25 Aligned_cols=249 Identities=25% Similarity=0.414 Sum_probs=200.2
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc---eEEEEEeCCCcCeEEEEEec-CCCeEEEEecCCCeEEE
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKV 468 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~i 468 (706)
..|.+.|.... ..--+++ |++++.|++|+|+..++. +.+..+.+|.++|..++|.. .-..+|++++.||.|.|
T Consensus 8 t~H~D~IHda~--lDyygkr-lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQ--LDYYGKR-LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhh--hhhhcce-eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 34666555554 3444666 999999999999998764 56778999999999999965 33349999999999999
Q ss_pred EEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCc---cEEEEEeecCCcEEEEE
Q 005254 469 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDL---VSVVTFRGHKRGIWSVE 543 (706)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~ 543 (706)
|.-.++ ..........|...|++++|.|. |-.|++++.||.|.|.++++. ........|.-.|++++
T Consensus 85 Wke~~g--------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 85 WKEENG--------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred EecCCC--------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 997765 23345556779999999999994 679999999999999988754 23344567999999999
Q ss_pred EccC---C-----------CEEEEecCCCcEEEEEcCCC--ceEEEEeecccCEEEEEEEeCC----CEEEEEeCCCCEE
Q 005254 544 FSPV---D-----------QVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRG----AQIVSCGADGLVK 603 (706)
Q Consensus 544 ~s~~---~-----------~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~ 603 (706)
|.|. | +.|++|+.|..|+||+..++ +.-+++.+|.+.|+.++|.|.- .+||+++.||++.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 9985 4 57999999999999998775 3445689999999999999964 4799999999999
Q ss_pred EEECCCC-e--EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 604 LWTVRTG-E--CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 604 iwd~~~~-~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
||..... + ....+......+..+.||..|+.|+.++.|+.+.+|+-+..
T Consensus 237 Iwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 9986521 1 12233456788999999999999999999999999986543
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=2e-24 Score=204.89 Aligned_cols=290 Identities=19% Similarity=0.236 Sum_probs=212.7
Q ss_pred CCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEE-EEecCCCcEEEEECCCCeEEEEeeCCCCcEEEE
Q 005254 72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL-ATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSI 150 (706)
Q Consensus 72 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~ 150 (706)
+..+++++.|+.|.+||..+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 3568889999999999999999999888654 46789999999977 5667789999999999988877765443 5678
Q ss_pred EEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCc
Q 005254 151 LFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTY 229 (706)
Q Consensus 151 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~ 229 (706)
+|+|+++. ++++++.++.|++||+.+++.+..+.. ...+.+++|+|+|++++++..++ .+.+||..+++......
T Consensus 79 ~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-- 154 (300)
T TIGR03866 79 ALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-- 154 (300)
T ss_pred EECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--
Confidence 99998764 344556789999999998887777653 23468899999999999887664 45556654332111000
Q ss_pred ceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeE
Q 005254 230 EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTA 309 (706)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (706)
T Consensus 155 -------------------------------------------------------------------------------- 154 (300)
T TIGR03866 155 -------------------------------------------------------------------------------- 154 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceee
Q 005254 310 ATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS 389 (706)
Q Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~ 389 (706)
T Consensus 155 -------------------------------------------------------------------------------- 154 (300)
T TIGR03866 155 -------------------------------------------------------------------------------- 154 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCC-------cCeEEEEEecCCCeEEEEecC
Q 005254 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM-------GAVGAVAFSKKLQNFLVSGSS 462 (706)
Q Consensus 390 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~~~ 462 (706)
.. ....++. +.++++.+++++..++.+.+||+.+++.+..+..+. .....++|+|+++..+++.+.
T Consensus 155 ----~~-~~~~~~~--~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 155 ----VD-QRPRFAE--FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred ----cC-CCccEEE--ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence 00 0011223 677787755666679999999999988776654221 123468899999855566666
Q ss_pred CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe-eCCCcEEEEeCCCccEEEEEeecCCcEEE
Q 005254 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLPDLVSVVTFRGHKRGIWS 541 (706)
Q Consensus 463 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 541 (706)
++.+.+||....+ ..... .+...+.+++|+|+|++|+++ ..+|.|.+||+.+++.+..++.. ...+.
T Consensus 228 ~~~i~v~d~~~~~----------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~ 295 (300)
T TIGR03866 228 ANRVAVVDAKTYE----------VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWG 295 (300)
T ss_pred CCeEEEEECCCCc----------EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccce
Confidence 7789999987542 22212 244578899999999999886 46899999999999999988754 55688
Q ss_pred EEEcc
Q 005254 542 VEFSP 546 (706)
Q Consensus 542 ~~~s~ 546 (706)
++++|
T Consensus 296 ~~~~~ 300 (300)
T TIGR03866 296 VVVRP 300 (300)
T ss_pred eEeCC
Confidence 88875
No 127
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=1.9e-26 Score=202.75 Aligned_cols=252 Identities=25% Similarity=0.444 Sum_probs=212.0
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce----------eeEeeeCCcceEEEeeeeeecCCCEEEEE
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS----------CSYVLAGHSEIVLCLDTCALSSGKILIVT 416 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 416 (706)
.....|.+.|..+.+.|.+..++++.+..+.++|||..... +...+.+|...-.++. +.+.....+++
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~gls--Wn~~~~g~Lls 195 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLS--WNRQQEGTLLS 195 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccc--cccccceeEee
Confidence 34456889999999999999999999999999999986432 2236778888666666 77777777999
Q ss_pred eeCCCcEEEEeCCCce-------EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE
Q 005254 417 GSKDNSVRLWDSESRC-------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 489 (706)
++.|+.|++||+.... ....+.+|...|..++|++....++.+++.|+.+.|||++.. ..+....
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--------~~~~~~~ 267 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--------TSKPSHS 267 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--------CCCCccc
Confidence 9999999999987543 345678999999999999988889999999999999999863 1125566
Q ss_pred EeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCC-CEEEEecCCCcEEEEEcC
Q 005254 490 VAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSIS 566 (706)
Q Consensus 490 ~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~ 566 (706)
..+|..++.|++|+| ++..||+|+.|++|++||+++. +++..+.+|...|..+.|||.. ..||+++.|+.+.|||+.
T Consensus 268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 778999999999999 6778899999999999999876 5677899999999999999964 678999999999999995
Q ss_pred CC--------------ceEEEEeecccCEEEEEEEeCCCE-EEEEeCCCCEEEEECC
Q 005254 567 DG--------------SCLKTFEGHTSSVLRASFLTRGAQ-IVSCGADGLVKLWTVR 608 (706)
Q Consensus 567 ~~--------------~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~iwd~~ 608 (706)
.- +++..-.||...|..+.|.|+..+ ++++++|+.+.||...
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 42 345666789999999999998876 6788999999999875
No 128
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.95 E-value=3.3e-25 Score=204.08 Aligned_cols=475 Identities=13% Similarity=0.153 Sum_probs=312.4
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG 103 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 103 (706)
.++|.|||.-|+.+.++.+.+||+..|.++.++++|...|.|++|+.||+.+|+|+.|..|.+|+-+-.. +..+. |..
T Consensus 17 d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkYS-H~D 94 (1081)
T KOG1538|consen 17 DIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKYS-HND 94 (1081)
T ss_pred eeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeeec-cCC
Confidence 4999999999999999999999999999999999999999999999999999999999999999864322 22233 899
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEE
Q 005254 104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 183 (706)
.|.|+.|+|-...|++++- ...-+|+.+.....+ . ....++.+++|..||+. ++.|-.+|+|.+-+- +++....
T Consensus 95 ~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqy--lalG~~nGTIsiRNk-~gEek~~ 168 (1081)
T KOG1538|consen 95 AIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQY--LALGMFNGTISIRNK-NGEEKVK 168 (1081)
T ss_pred eeeEeecCchHHHhhhcch-hhccccChhhhhHHh-h-hhheeEEEeeecCCCcE--EEEeccCceEEeecC-CCCcceE
Confidence 9999999999999999875 446789876544332 1 24567889999998886 999999999999875 3443333
Q ss_pred e---ecccceEEEEEEecCC-----CEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchh
Q 005254 184 L---DKHFSRVTSMAITSDG-----STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255 (706)
Q Consensus 184 ~---~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (706)
+ .+...+|.+++|+|.. ..+++..-..++.++.+.....-+.........++...++|.
T Consensus 169 I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGE------------- 235 (1081)
T KOG1538|consen 169 IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGE------------- 235 (1081)
T ss_pred EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCc-------------
Confidence 3 3467899999999863 367788888888888887655554555555667777777776
Q ss_pred hhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeee
Q 005254 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 335 (706)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 335 (706)
+++.||.++.+.++..+.-.+-.. .+...-+..+...|+++.+++++.||++..|++..
T Consensus 236 ----------y~LiGGsdk~L~~fTR~GvrLGTv-----------g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 236 ----------YILLGGSDKQLSLFTRDGVRLGTV-----------GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ----------EEEEccCCCceEEEeecCeEEeec-----------cccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 789999999999998665433221 22345678889999999999999999999998765
Q ss_pred cccccee------------eEEeeEecccCce------eeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcc
Q 005254 336 VPEKKME------------LILSKRLVGYNEE------ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397 (706)
Q Consensus 336 ~~~~~~~------------~~~~~~~~~~~~~------v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 397 (706)
....... ........+.... |..++. -.+.+++--. ..|.+|.+.+++....-..-..
T Consensus 295 STVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiai---YrnrLAVQLp-eki~iYel~se~~~~mhY~v~e 370 (1081)
T KOG1538|consen 295 STVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAI---YRNRLAVQLP-EKILIYELYSEDLSDMHYRVKE 370 (1081)
T ss_pred hHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHh---hhhhheeccc-ceEEEEeccccccccchhHHHH
Confidence 4311000 0000000000000 111111 1223443333 4677777765543321111000
Q ss_pred e-EEEeeee-eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEE--ecCCCeEEEEecCCCeEEEEEecC
Q 005254 398 I-VLCLDTC-ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF--SKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 398 ~-i~~~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
. ...+++. ..-.++. ++ -+.+..+..+|...-+...- .-.+-|.-+.+ .|-++.-|+.|..+|.|.-.-+++
T Consensus 371 kI~kkf~cSLlVVc~~H-iV-lCqekrLqClDF~Gvk~ReW--~M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN 446 (1081)
T KOG1538|consen 371 KIIKKFECSLLVVCANH-IV-LCQEKRLQCLDFSGVKEREW--QMESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDN 446 (1081)
T ss_pred HHHhhccceEEEEEcCe-EE-EEcccceeeecccchhhhhh--hHHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecC
Confidence 0 0000000 0011222 22 23456677777653211000 00111111111 245566788888888765444443
Q ss_pred CCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEE
Q 005254 474 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT 553 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 553 (706)
. ....+......|.|+.++.+.+.||+..+.++..++|+.+++.+.+- ..+.+++|+....-+++
T Consensus 447 ~-----------~PiLl~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QE----pg~nSV~wNT~~E~Mlc 511 (1081)
T KOG1538|consen 447 L-----------FPILLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQE----PGANSVAWNTQCEDMLC 511 (1081)
T ss_pred C-----------chhheecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeec----CCCceEEeeccccceEE
Confidence 3 22233445567999999999999999999999999999999887653 44678899875443333
Q ss_pred ecCCCcEEEE
Q 005254 554 ASGDKTIKIW 563 (706)
Q Consensus 554 ~~~dg~i~iw 563 (706)
-+..|.+.|-
T Consensus 512 fT~~g~L~VR 521 (1081)
T KOG1538|consen 512 FTGGGYLNVR 521 (1081)
T ss_pred EecCCceEEE
Confidence 3333555543
No 129
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.2e-26 Score=183.85 Aligned_cols=145 Identities=23% Similarity=0.292 Sum_probs=126.3
Q ss_pred eecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC---eEEEEeeccCCCeEEEEECC--CCCEEEEecCCCcEEEE
Q 005254 55 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL---KCLRSWKGHDGPAIGMACHP--SGGLLATAGADRKVLVW 129 (706)
Q Consensus 55 ~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~vw 129 (706)
.-..|...|..+...-.|++||+++.|++|+|+.+.+. .++.++.+|.++|..++|.. -|..||+++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34578999999999999999999999999999999754 57889999999999999977 89999999999999999
Q ss_pred ECCCCeE--EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC---eeEEEeecccceEEEEEEecC
Q 005254 130 DVDGGFC--THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRVTSMAITSD 199 (706)
Q Consensus 130 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~ 199 (706)
.-++|+- ......|...|++++|.|.+-..+|++++.||.|.|.+.++. ........|.-.|++++|.|.
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 9988853 345567999999999999999999999999999999987654 223345679999999999986
No 130
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=3.1e-25 Score=183.30 Aligned_cols=298 Identities=22% Similarity=0.300 Sum_probs=224.9
Q ss_pred eecCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCCCe------EE----E-----EeeccCCCeEEEEECC-CCCEE
Q 005254 55 TIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTLK------CL----R-----SWKGHDGPAIGMACHP-SGGLL 117 (706)
Q Consensus 55 ~l~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~------~~----~-----~~~~~~~~v~~~~~s~-~~~~l 117 (706)
....|.+.|+++.+.+ .|+|+++|+.||.|.+||+++.. ++ . .-.+|...|..+.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3456889999999998 68999999999999999997543 11 1 1235888999999999 66788
Q ss_pred EEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCC-ceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEE
Q 005254 118 ATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTD-KSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI 196 (706)
Q Consensus 118 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 196 (706)
.+++-|.+++|||..+.+....|+ ..+.|..-+++|-.. ..++++|..+-.|++-|+.+|...+++.+|.+.|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 888999999999999988887776 678888889988654 667888999999999999999999999999999999999
Q ss_pred ecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCe
Q 005254 197 TSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 275 (706)
Q Consensus 197 ~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (706)
+|... .|++|+.||.|++||++...
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRras------------------------------------------------------ 222 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRAS------------------------------------------------------ 222 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeeccc------------------------------------------------------
Confidence 99877 46788999999999986421
Q ss_pred EEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCce
Q 005254 276 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 355 (706)
Q Consensus 276 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (706)
T Consensus 223 -------------------------------------------------------------------------------- 222 (397)
T KOG4283|consen 223 -------------------------------------------------------------------------------- 222 (397)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeeEeCCCCcEEEEEecCCcEEEEeCCCcee---eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce
Q 005254 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC---SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (706)
Q Consensus 356 v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 432 (706)
|.+++.|..+.+. .+.-..|.+.+..++ +.+++.. +++.+.|..+++|+..+|+
T Consensus 223 --------------------gcf~~lD~hn~k~~p~~~~n~ah~gkvngla--~tSd~~~-l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 223 --------------------GCFRVLDQHNTKRPPILKTNTAHYGKVNGLA--WTSDARY-LASCGTDDRIRVWNMESGR 279 (397)
T ss_pred --------------------ceeEEeecccCccCccccccccccceeeeee--ecccchh-hhhccCccceEEeecccCc
Confidence 1111222211111 112335777888887 7788887 8899999999999998875
Q ss_pred EEEEEeC---CCc----CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 433 CVGVGTG---HMG----AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 433 ~~~~~~~---~~~----~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
......+ |.. .+. +. +-+.. .++---.++.+.++.+-.+. ....+..|...+.|.++.|+
T Consensus 280 ntl~~~g~~~~n~~~~~~~~-~~-~~~s~-vfv~~p~~~~lall~~~sgs----------~ir~l~~h~k~i~c~~~~~~ 346 (397)
T KOG4283|consen 280 NTLREFGPIIHNQTTSFAVH-IQ-SMDSD-VFVLFPNDGSLALLNLLEGS----------FVRRLSTHLKRINCAAYRPD 346 (397)
T ss_pred ccccccccccccccccceEE-Ee-ecccc-eEEEEecCCeEEEEEccCce----------EEEeeecccceeeEEeecCc
Confidence 4322110 111 111 22 22222 34444455778888776554 66777788888999999999
Q ss_pred CCEEEEeeCCCcEEEEeC
Q 005254 506 DSLVCTGSQDRTACVWRL 523 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~ 523 (706)
-+...+|..|+.|..|-.
T Consensus 347 fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 347 FEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred hhhhhccccCCccccccc
Confidence 999999999999999975
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=3.4e-24 Score=203.29 Aligned_cols=272 Identities=13% Similarity=0.151 Sum_probs=208.7
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEE
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA 446 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 446 (706)
..+++++.++.+.+||+.+++....+..+.. +.++. +.++++.++++++.++.+++||..+++....+..+. .+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~--~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~ 77 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGIT--LSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPEL 77 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceE--ECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccE
Confidence 4678888899999999999988888876654 44565 788888866788889999999999988877665543 3567
Q ss_pred EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC-cEEEEeCCC
Q 005254 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-TACVWRLPD 525 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~ 525 (706)
++++|+++.+++++..++.+++||+.... ....+ .....+.+++++|+|++++++..++ .+.+||..+
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~----------~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRK----------VLAEI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCe----------EEeEe-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence 89999988555666778999999997542 12222 2234468899999999999988765 467789988
Q ss_pred ccEEEEEeecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcCCCceEEEEeeccc-------CEEEEEEEeCCCEEEE-E
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTS-------SVLRASFLTRGAQIVS-C 596 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~-------~i~~~~~s~~~~~l~~-~ 596 (706)
++...... ....+..++|+|++++|+++ ..++.|++||+.+++.+..+..+.. ....++|+|+++++++ .
T Consensus 147 ~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~ 225 (300)
T TIGR03866 147 YEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL 225 (300)
T ss_pred CeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence 87765544 23456789999999988654 4689999999999988776653211 2346889999998655 3
Q ss_pred eCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEECCchhHH
Q 005254 597 GADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG-GSDALVNLWHDSTAAER 655 (706)
Q Consensus 597 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vw~~~~~~~~ 655 (706)
+.++.+.+||+.+++.+..+. +...+.+++|+|++++|+++ +.+|.|.+||+.+++..
T Consensus 226 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 456789999999998876653 34578999999999999876 46899999999987643
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=3e-26 Score=203.49 Aligned_cols=279 Identities=18% Similarity=0.275 Sum_probs=227.2
Q ss_pred cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce---eeEeeeC--CcceEEEeeeeeecCCCEEEEEeeCCCcEEEE
Q 005254 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (706)
Q Consensus 352 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~---~~~~~~~--~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~ 426 (706)
|.+-|..+.. +...+++.+++. |.|++||+.... .+..+.. ....+.... ..++++. |++|+.-.++.||
T Consensus 418 HGEvVcAvtI-S~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSck--L~pdgrt-LivGGeastlsiW 492 (705)
T KOG0639|consen 418 HGEVVCAVTI-SNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCK--LLPDGRT-LIVGGEASTLSIW 492 (705)
T ss_pred cCcEEEEEEe-cCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeE--ecCCCce-EEeccccceeeee
Confidence 4444444444 446677777766 899999997542 2222322 334455554 7788888 8889999999999
Q ss_pred eCCCceEEE--EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 427 DSESRCCVG--VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 427 d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
|+....... .+........+++.+||.+ +.+++..||.|.|||+.+.. ....+.+|...+.||.+++
T Consensus 493 DLAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~----------~VrqfqGhtDGascIdis~ 561 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQT----------LVRQFQGHTDGASCIDISK 561 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccce----------eeecccCCCCCceeEEecC
Confidence 998765433 3334445677899999977 89999999999999998654 7778899999999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEE
Q 005254 505 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 584 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 584 (706)
||..|.+|+-|++|+-||+++++.+.... ....|.++..+|++.+|+.|-.++.+.|.... +.....+.-|.+.|.++
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSl 639 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSL 639 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEE
Confidence 99999999999999999999988776544 56789999999999999999999999998864 44455666699999999
Q ss_pred EEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 585 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
.|++.|+++++.+.|..+..|...-|..+...+. .+.|.++.+|.|+++++||+.|....||.+
T Consensus 640 KFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999999999999998988877654 678999999999999999999999999876
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.5e-22 Score=192.58 Aligned_cols=250 Identities=19% Similarity=0.279 Sum_probs=212.6
Q ss_pred CCCcccccceeeceeeeeeeeccceEEcCCCCEEEEeeCC-eEEEEEccCC-eEEEeecCCCccEEEEEEccCCCEEEEE
Q 005254 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGE-SINIVDLSNA-SIKSTIEGGSDTITALALSPDDKLLFSS 78 (706)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~i~i~d~~~~-~~~~~l~~~~~~i~~l~~s~~~~~l~s~ 78 (706)
|....++.+|.....++. |++.|+|.+|.+++.+ .|++|+..+. +...++..+...|.+++.. +.+++++
T Consensus 1 M~~~r~klRyaht~G~t~------i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~ 72 (933)
T KOG1274|consen 1 MSSTRLKLRYAHTGGLTL------ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTG 72 (933)
T ss_pred CCcccccchhhccCceEE------EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEe
Confidence 677778888877766555 9999999999888776 8999997666 4445555577888888766 4489999
Q ss_pred eccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCc
Q 005254 79 GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK 158 (706)
Q Consensus 79 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 158 (706)
+.+++|.+|...+++.-..+....-++++++|+.+|+++|.|+.|-.|++-+..+......+++|.++|.++.|+|.++.
T Consensus 73 s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f 152 (933)
T KOG1274|consen 73 SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF 152 (933)
T ss_pred eccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCE
Confidence 99999999999988766666666689999999999999999999999999999999999999999999999999997765
Q ss_pred eEEEEEecCCeEEEEECCCCeeEEEeec--------ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCc-
Q 005254 159 SLLFSGSDDATVRVWDLLAKKCVATLDK--------HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY- 229 (706)
Q Consensus 159 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~- 229 (706)
||+.+-||.|++||++++.+..++.+ ....+..++|+|+|..++..+.|+.|++|+..+.+....+...
T Consensus 153 --LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~ 230 (933)
T KOG1274|consen 153 --LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL 230 (933)
T ss_pred --EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc
Confidence 99999999999999999987776643 1456788999999888998999999999999998877766543
Q ss_pred --ceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCC
Q 005254 230 --EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (706)
Q Consensus 230 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 283 (706)
..+..+.|+|.|. ++++++.+|.|.+||.++
T Consensus 231 ~ss~~~~~~wsPnG~-----------------------YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 231 SSSKFSDLQWSPNGK-----------------------YIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccceEEEEEcCCCc-----------------------EEeeeccCCcEEEEeccc
Confidence 3477888999987 899999999999999985
No 134
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.95 E-value=3.4e-24 Score=197.48 Aligned_cols=279 Identities=20% Similarity=0.298 Sum_probs=208.2
Q ss_pred cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee
Q 005254 62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK 141 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 141 (706)
.|..++|-|||..|+.+..+ .+.+||...|.++.++++|...|.+++|+.||+++|+|+.|..|.+|+..-.-.++ +
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-Y- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-Y- 90 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee-e-
Confidence 89999999999888877644 79999999999999999999999999999999999999999999999975433332 2
Q ss_pred CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCc
Q 005254 142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS 221 (706)
Q Consensus 142 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 221 (706)
.|...|.|+.|+|-... +++++-+. .-+|..+.....+ . .....+.+++|..||++++.|-.+|+|.+=+-.. +
T Consensus 91 SH~D~IQCMsFNP~~h~--LasCsLsd-FglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-E 164 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQ--LASCSLSD-FGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-E 164 (1081)
T ss_pred ccCCeeeEeecCchHHH--hhhcchhh-ccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCCC-C
Confidence 49999999999998766 77776543 7789875544322 1 2345788999999999999999999988764221 1
Q ss_pred ceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccC
Q 005254 222 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMD 301 (706)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (706)
...
T Consensus 165 ek~----------------------------------------------------------------------------- 167 (1081)
T KOG1538|consen 165 EKV----------------------------------------------------------------------------- 167 (1081)
T ss_pred cce-----------------------------------------------------------------------------
Confidence 110
Q ss_pred CCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEE
Q 005254 302 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 381 (706)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~ 381 (706)
...+..+.+++|.+++|+|..+
T Consensus 168 -------------------------------------------~I~Rpgg~Nspiwsi~~~p~sg--------------- 189 (1081)
T KOG1538|consen 168 -------------------------------------------KIERPGGSNSPIWSICWNPSSG--------------- 189 (1081)
T ss_pred -------------------------------------------EEeCCCCCCCCceEEEecCCCC---------------
Confidence 1122234456677777766322
Q ss_pred eCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec
Q 005254 382 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 382 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 461 (706)
+.....+++.....++.++.+. |+.+..-+.-.-...++.+.++|. +++.|+
T Consensus 190 --------------------------~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGE-y~LiGG 241 (1081)
T KOG1538|consen 190 --------------------------EGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGE-YILLGG 241 (1081)
T ss_pred --------------------------CCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCc-EEEEcc
Confidence 0011125555556666666554 344443344455667899999988 899999
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 523 (706)
.|+.+.+|.-... ...+.......|..++..|++++++.|+.||+|..|++
T Consensus 242 sdk~L~~fTR~Gv-----------rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 242 SDKQLSLFTRDGV-----------RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CCCceEEEeecCe-----------EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 9999999976543 44455557788999999999999999999999999986
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=1.7e-24 Score=179.06 Aligned_cols=254 Identities=19% Similarity=0.280 Sum_probs=197.2
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
+|.-.|.++.|.|-+...+.+++-|..+++||.++.+....+.- .+.|..-++....-...++++|..+-.|++-|+.+
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S 177 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS 177 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence 45566778888888999999999999999999998877665543 23344433223334455689999999999999999
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCC-----CCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD-----DAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
|..-..+.+|...|.++.|+|.....|++|+.||.|++||++.... ........+....-..|.+.+..++|+.+
T Consensus 178 Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd 257 (397)
T KOG4283|consen 178 GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD 257 (397)
T ss_pred CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc
Confidence 9999999999999999999999998999999999999999986521 11111111122345578889999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCccEEEEEee---cCC----cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc
Q 005254 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKR----GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~----~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 578 (706)
+.++++.+.|..+++|+..+|+....-.+ |+. .+. +. +-+...++---.++.+.++++-++..++.+..|.
T Consensus 258 ~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~ 335 (397)
T KOG4283|consen 258 ARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL 335 (397)
T ss_pred chhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc
Confidence 99999999999999999988754332111 211 111 22 3334444444566889999999999999999999
Q ss_pred cCEEEEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 579 SSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 579 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
..+.+..+-|+-+.+.+|..|+.|..|-.
T Consensus 336 k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 336 KRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ceeeEEeecCchhhhhccccCCccccccc
Confidence 99999999999999999999999999976
No 136
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.1e-26 Score=212.21 Aligned_cols=235 Identities=20% Similarity=0.311 Sum_probs=196.2
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCC---ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSES---RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 482 (706)
+......++++++..|.|.+||+.. .+.+..+..|...+.++.|++...++|++|++||.|++||++..+
T Consensus 95 W~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~------- 167 (839)
T KOG0269|consen 95 WGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK------- 167 (839)
T ss_pred cccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-------
Confidence 4555666799999999999999987 566678889999999999999999999999999999999998765
Q ss_pred ccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCCCEEEEecCCCcE
Q 005254 483 NLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 560 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 560 (706)
....+.+....|..++|+| .+..++++.+.|.+++||++.. +....+..|.++|.++.|+|++.+||+|+.|++|
T Consensus 168 ---S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 168 ---SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred ---ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence 4555666788899999999 6789999999999999999865 5566788999999999999999999999999999
Q ss_pred EEEEcCCCce--EEEEeecccCEEEEEEEeCCCE-EEEEe--CCCCEEEEECCCC-eEEEEeccCCCcEEEEEEcC-CCC
Q 005254 561 KIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQ-IVSCG--ADGLVKLWTVRTG-ECIATYDKHEDKIWALAVGK-KTE 633 (706)
Q Consensus 561 ~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~-l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~ 633 (706)
+|||+.+++. +.++. -..++.++.|-|..++ |++++ .|..|+|||++.. -+..++..|...++.++|.. |..
T Consensus 245 kiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~ 323 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRI 323 (839)
T ss_pred EEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCce
Confidence 9999976654 33333 3468999999998776 45544 4779999999765 46788889999999999955 445
Q ss_pred EEEEEeCCCcEEEEECCc
Q 005254 634 MFATGGSDALVNLWHDST 651 (706)
Q Consensus 634 ~l~~~~~dg~i~vw~~~~ 651 (706)
.+.+++.||++..-.+..
T Consensus 324 ~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 324 NLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eeEeecCccHHHHhhhhc
Confidence 788999999886544443
No 137
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.3e-25 Score=199.61 Aligned_cols=313 Identities=21% Similarity=0.283 Sum_probs=231.8
Q ss_pred EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCC--EEEEecCCCcEEEEEC
Q 005254 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG--LLATAGADRKVLVWDV 131 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~vw~~ 131 (706)
..+.||++.|.||...|.|.+||+|+.||+|+||.+.+|++++++. ..+.|.|++|+|.+. .||++-. ..+.|-+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEEeCc
Confidence 4568999999999999999999999999999999999999999988 567999999999765 4555544 33777666
Q ss_pred CCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE----ecCCeEEEEECCCCe----eEEEeecccceEEEEEEecCCCEE
Q 005254 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG----SDDATVRVWDLLAKK----CVATLDKHFSRVTSMAITSDGSTL 203 (706)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~----~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l 203 (706)
.-|..+.... . . . +++++ ..++.+..|.-.... -++..-.|...|..+.|+..|.+|
T Consensus 472 ~~G~~~e~~~--t---~--------e--ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 472 IFGDRLEVGP--T---K--------E--LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL 536 (733)
T ss_pred cccchhhhcc--h---h--------h--hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence 5453221110 0 0 0 01111 235577888654211 133445688999999999999999
Q ss_pred EEEeCCC---EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEE
Q 005254 204 ISAGRDK---VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 280 (706)
Q Consensus 204 ~~~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 280 (706)
++...++ .|.+.++..
T Consensus 537 atV~~~~~~~~VliHQLSK------------------------------------------------------------- 555 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSK------------------------------------------------------------- 555 (733)
T ss_pred EEeccCCCcceEEEEeccc-------------------------------------------------------------
Confidence 9987543 344444322
Q ss_pred CCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEee
Q 005254 281 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK 360 (706)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 360 (706)
T Consensus 556 -------------------------------------------------------------------------------- 555 (733)
T KOG0650|consen 556 -------------------------------------------------------------------------------- 555 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC
Q 005254 361 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH 440 (706)
Q Consensus 361 ~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 440 (706)
......+....+.+.++. |.|.... +++++ ...|++||+.....+..+...
T Consensus 556 -------------------------~~sQ~PF~kskG~vq~v~--FHPs~p~-lfVaT-q~~vRiYdL~kqelvKkL~tg 606 (733)
T KOG0650|consen 556 -------------------------RKSQSPFRKSKGLVQRVK--FHPSKPY-LFVAT-QRSVRIYDLSKQELVKKLLTG 606 (733)
T ss_pred -------------------------ccccCchhhcCCceeEEE--ecCCCce-EEEEe-ccceEEEehhHHHHHHHHhcC
Confidence 222222333334444454 6666666 44443 468999999998888888778
Q ss_pred CcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEE
Q 005254 441 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520 (706)
Q Consensus 441 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 520 (706)
...|..++++|.|. -|+.++.|+.+..+|++-.. +....+..|...+++++|++.-.++++|+.||++.|
T Consensus 607 ~kwiS~msihp~GD-nli~gs~d~k~~WfDldlss---------kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V 676 (733)
T KOG0650|consen 607 SKWISSMSIHPNGD-NLILGSYDKKMCWFDLDLSS---------KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV 676 (733)
T ss_pred CeeeeeeeecCCCC-eEEEecCCCeeEEEEcccCc---------chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence 88999999999988 68889999999999998543 255567779999999999999999999999999999
Q ss_pred EeC------CCc---cEEEEEeecCCc----EEEEEEccCCCEEEEecCCCcEEEE
Q 005254 521 WRL------PDL---VSVVTFRGHKRG----IWSVEFSPVDQVVITASGDKTIKIW 563 (706)
Q Consensus 521 ~d~------~~~---~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~iw 563 (706)
|.- ... -++..+++|... |....|+|...+|++++.||+|++|
T Consensus 677 fhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 677 FHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 842 221 345677788765 8999999999999999999999998
No 138
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=2.8e-25 Score=197.40 Aligned_cols=228 Identities=18% Similarity=0.276 Sum_probs=190.0
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 444 (706)
+++.|++|+...++.+||+.................|.+...+|+.+. .++++.||.|.|||+.+...++.+++|...+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakv-cFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKV-CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccce-eeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 667777777778888899876655444333343333433337788877 8888999999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
.||.++++|. .|-+|+-|++|+.||++.+.. .........|.++..+|++.+|++|-.++.+.+....
T Consensus 555 scIdis~dGt-klWTGGlDntvRcWDlregrq-----------lqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 555 SCIDISKDGT-KLWTGGLDNTVRCWDLREGRQ-----------LQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eeEEecCCCc-eeecCCCccceeehhhhhhhh-----------hhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 9999999988 799999999999999987632 1122345679999999999999999999999988864
Q ss_pred CccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEE
Q 005254 525 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 604 (706)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 604 (706)
+.....+.-|...|.++.|.+.|+++++.+.|..+..|...-|..+...+ ..+.|.++.+|.|++|+++|+.|....|
T Consensus 623 -kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 623 -KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred -CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEE
Confidence 44555667799999999999999999999999999999998888887776 5679999999999999999999988888
Q ss_pred EEC
Q 005254 605 WTV 607 (706)
Q Consensus 605 wd~ 607 (706)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 864
No 139
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.5e-25 Score=192.07 Aligned_cols=286 Identities=17% Similarity=0.290 Sum_probs=218.6
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECC--CCeEEEEeeccCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCeE
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLS--TLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFC 136 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~~~~ 136 (706)
.++|+++.|+|....|.+|+.|++++||.+. +...++.+.-...+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999874 4457777777789999999999999 899999999999999998875
Q ss_pred EE--EeeCCC-CcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEE
Q 005254 137 TH--YFKGHK-GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213 (706)
Q Consensus 137 ~~--~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 213 (706)
.+ ...++. ..+.....+|+++. ++..+..|.|.+....+++.+.+++ -.+.|..++|+.+++.|++++.+|.|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~f--ia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNF--IAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCe--EEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence 43 233343 34677888998875 9999999999999999999998886 458899999999999999999999999
Q ss_pred EEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCc
Q 005254 214 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 293 (706)
Q Consensus 214 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 293 (706)
+||++...++.......
T Consensus 370 v~nl~~~~~~~rf~D~G--------------------------------------------------------------- 386 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDG--------------------------------------------------------------- 386 (514)
T ss_pred EEecCCcceEEEEeecC---------------------------------------------------------------
Confidence 99998765443322111
Q ss_pred cccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEe
Q 005254 294 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373 (706)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 373 (706)
T Consensus 387 -------------------------------------------------------------------------------- 386 (514)
T KOG2055|consen 387 -------------------------------------------------------------------------------- 386 (514)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC------ceEEEEEeCCCcCeEEE
Q 005254 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES------RCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 374 ~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~v~~~ 447 (706)
.+.....|.+.++.+ +|+|+..|.|.|||.++ .+++..+..-...|+++
T Consensus 387 ------------------------~v~gts~~~S~ng~y-lA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl 441 (514)
T KOG2055|consen 387 ------------------------SVHGTSLCISLNGSY-LATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL 441 (514)
T ss_pred ------------------------ccceeeeeecCCCce-EEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence 011111123444443 77777777777777543 34555556667789999
Q ss_pred EEecCCCeEEEEecC--CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 448 AFSKKLQNFLVSGSS--DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
.|+++.+ +|+.++. +..+++-.+...+....-| .....-+.++|++|||.+.++|.|..+|.+.+|.+.
T Consensus 442 ~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP-------~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 442 QFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFP-------TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeCcchh-hhhhhhhccccceEEEeccceeeeccCC-------CCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999988 7766654 6788988887643211111 112233568999999999999999999999999874
No 140
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-22 Score=193.77 Aligned_cols=520 Identities=15% Similarity=0.157 Sum_probs=329.3
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCc-eEEEEEecCCeEEEEECCCCeeEEEe
Q 005254 106 IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK-SLLFSGSDDATVRVWDLLAKKCVATL 184 (706)
Q Consensus 106 ~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~ 184 (706)
..-.||+|+++++... +..|.||...++.++..+..|..++..+.+.|.... .++++.+.+|.|++||...+..++++
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 3457899999888765 578999999999999999999999999999987654 67889999999999999999999888
Q ss_pred ecccceEEEEEEec----CCCEEEEEeCCCEEE-EEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcc
Q 005254 185 DKHFSRVTSMAITS----DGSTLISAGRDKVVN-LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK 259 (706)
Q Consensus 185 ~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (706)
..+ .++..+.+.| ....+.....+..+. ....+........... -.....+. +.... ..-...
T Consensus 99 ~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~-----t~~~~~~d----~~~~~--~~~~~I 166 (792)
T KOG1963|consen 99 DNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLA-----TFDSAKGD----FLKEH--QEPKSI 166 (792)
T ss_pred ecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEee-----eccccchh----hhhhh--cCCccE
Confidence 644 3444444432 111121222221111 1111110000000000 00000000 00000 000000
Q ss_pred ccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecccc
Q 005254 260 RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK 339 (706)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 339 (706)
.......+.....+..+.+|+...+. ....... ....+...++...++|.++.++++..+|++.+|.......
T Consensus 167 ~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~-----~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~- 239 (792)
T KOG1963|consen 167 VDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRD-----ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD- 239 (792)
T ss_pred EEcCCceEEEEEEeeeEEEEEecccc-eeeccch-----hhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-
Confidence 11122245555566677788777653 1111111 1112223378899999999999999999999998876422
Q ss_pred ceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC
Q 005254 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 419 (706)
Q Consensus 340 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 419 (706)
.......+.-|..+|.++.|++ ++.+|.+|+..+.+.+|.+.+++ .+.++.-.++|..+. ++|++.. .+....
T Consensus 240 --~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~--vS~ds~~-~sl~~~ 312 (792)
T KOG1963|consen 240 --DSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIV--VSPDSDL-YSLVLE 312 (792)
T ss_pred --ccccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEE--EcCCCCe-EEEEec
Confidence 2223355667889999999997 88999999999999999999999 667777888888887 7788877 777788
Q ss_pred CCcEEEEeCCCceEEEEEeC-----------CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeE
Q 005254 420 DNSVRLWDSESRCCVGVGTG-----------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488 (706)
Q Consensus 420 dg~i~i~d~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 488 (706)
|..|.+....+......+.+ ..+-.+.++++|.-+ .++-.+..|.|++||+.+......-........
T Consensus 313 DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~ 391 (792)
T KOG1963|consen 313 DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYS 391 (792)
T ss_pred CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeeccc
Confidence 99999988765544333222 244567788888433 688888999999999976643211000000000
Q ss_pred EEe-ecCcceEEEEEcCCCCEEEEee--------CCC--cEEEEeCCCccEEEE-----EeecCCcEEEEEEccC--CCE
Q 005254 489 VVA-AHGKDINSLAVAPNDSLVCTGS--------QDR--TACVWRLPDLVSVVT-----FRGHKRGIWSVEFSPV--DQV 550 (706)
Q Consensus 489 ~~~-~~~~~i~~~~~s~~~~~l~~~~--------~dg--~i~i~d~~~~~~~~~-----~~~~~~~v~~~~~s~~--~~~ 550 (706)
.-. .+.-.++.++.+..|.++++.- .|| .+++|-......-.. ..+|...+...++.+. ...
T Consensus 392 ~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~ 471 (792)
T KOG1963|consen 392 DGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVR 471 (792)
T ss_pred CCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccce
Confidence 000 2233577888888899999864 233 467787654433222 2357777777666553 237
Q ss_pred EEEecCCCcEEEEEcCCC----------ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC-CeEEEEeccC
Q 005254 551 VITASGDKTIKIWSISDG----------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-GECIATYDKH 619 (706)
Q Consensus 551 l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~ 619 (706)
.++++.||.++||-+... .|...-..|..++++++|+.||..|+ .+.|+.|.+||..+ .+.......-
T Consensus 472 ~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~~~ 550 (792)
T KOG1963|consen 472 CVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEGSR 550 (792)
T ss_pred eEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhcccccc
Confidence 999999999999998322 23222223788999999999996555 55778999999988 4433333322
Q ss_pred CCcEEEEEEcC----CCCEEEEEeCCCcEEEEECCchhHHH
Q 005254 620 EDKIWALAVGK----KTEMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 620 ~~~v~~~~~s~----~~~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
..++..+.+.. ++ .+.....+.+.+|++-+.....
T Consensus 551 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 551 NWPIAELLFTAQTQNDG--ALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ccchHhHhhhccccccc--ceeeccCceEehHhhhhhheec
Confidence 33333333322 23 2334456789999988776544
No 141
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-24 Score=208.75 Aligned_cols=243 Identities=20% Similarity=0.302 Sum_probs=207.4
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc-eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEe
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
..|....+.+. +.++++. +++++.||.|++|+.... +.-..+..+...|.+++.... .+++++.+++|.+|.+
T Consensus 10 yaht~G~t~i~--~d~~gef-i~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLIC--YDPDGEF-ICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEE--EcCCCCE-EEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeC
Confidence 35666666665 8888986 999999999999987765 333333336777777776655 7999999999999999
Q ss_pred cCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEE
Q 005254 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 551 (706)
..+. ....+.....++++++++.+|+++|.|+.|-.|++.+..+......+++|..+|.++.|+|.+++|
T Consensus 84 ps~~----------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fL 153 (933)
T KOG1274|consen 84 PSGE----------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFL 153 (933)
T ss_pred CCCC----------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEE
Confidence 8764 333445566789999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcEEEEEcCCCceEEEEeec--------ccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec--cCCC
Q 005254 552 ITASGDKTIKIWSISDGSCLKTFEGH--------TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD--KHED 621 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~ 621 (706)
|+.+.||.|++||+.++.+..++.+- ...+..++|+|+|..++..+.|+.|++|+..+++....+. .+..
T Consensus 154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss 233 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS 233 (933)
T ss_pred EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc
Confidence 99999999999999998877666531 3457789999998899999999999999999999888876 3455
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 622 KIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 622 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
.+..++|||+|+|||+++.||.|.|||+++
T Consensus 234 ~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 234 KFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 699999999999999999999999999997
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=5.5e-27 Score=217.77 Aligned_cols=251 Identities=24% Similarity=0.432 Sum_probs=220.9
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEec
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 451 (706)
......+++|+.. .+..|...+.++. . -.....+++|+.|..+-+|.......+..+.+|..+|.++.|++
T Consensus 10 ~~~~t~Lr~~~~~------~~~~hsaav~~lk--~-~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~ 80 (825)
T KOG0267|consen 10 TKRATKLRVWDTR------EFVAHSAAVGCLK--I-RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT 80 (825)
T ss_pred eeeeeccccccch------hhhhhhhhhceee--e-eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc
Confidence 3333455566654 3345666666665 3 23334499999999999999988888888999999999999999
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEE
Q 005254 452 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 531 (706)
Q Consensus 452 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 531 (706)
... +|++|+.+|+|++||+.... ....+.+|...+.++.|+|-+.+.+.|+.|..+.+||.+...+...
T Consensus 81 ~E~-LlaagsasgtiK~wDleeAk----------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 81 SER-LLAAGSASGTIKVWDLEEAK----------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred chh-hhcccccCCceeeeehhhhh----------hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee
Confidence 865 89999999999999998654 5567888999999999999999999999999999999998889999
Q ss_pred EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe
Q 005254 532 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611 (706)
Q Consensus 532 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 611 (706)
+.+|...|..+.|+|+|++++.+++|..++|||+..|+...+|..|...+..+.|+|..-.|++|+.|+++++||+++-+
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 005254 612 CIATYDKHEDKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 612 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 642 (706)
.+........+|.+++|+|+++.+.+|..+.
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred EeeccCCccCCceeeeecCCceeeecCchhh
Confidence 9999988899999999999999988876654
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=7.3e-25 Score=200.79 Aligned_cols=291 Identities=22% Similarity=0.300 Sum_probs=222.6
Q ss_pred CCCCcEEEEEecCCcEEEEeCCCceee------EeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE
Q 005254 363 GEEEQYLAVATNIEQVQVYDLSSMSCS------YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 436 (706)
Q Consensus 363 ~~~~~~l~~~~~~~~i~~~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 436 (706)
+....+|+++..+|.|.++|....... .....|...|..+. +.| ++.+|++++.|.++++||++..+++..
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~--wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~ 137 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLK--WAP-GESLLVSASGDSTIRPWDVKTSRLVGG 137 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeec--cCC-CceeEEEccCCceeeeeeeccceeecc
Confidence 457789999999999999998765443 56678999999998 666 777799999999999999999988877
Q ss_pred --EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC---------------ccc--ccceeEEEeecCcce
Q 005254 437 --GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE---------------QPM--NLKAKAVVAAHGKDI 497 (706)
Q Consensus 437 --~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~---------------~~~--~~~~~~~~~~~~~~i 497 (706)
+.+|.+.|.+++|.+..+..+++|+.||.|.|||++....... .+. ..+.......+...|
T Consensus 138 ~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti 217 (720)
T KOG0321|consen 138 RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTI 217 (720)
T ss_pred eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCce
Confidence 8899999999999999999999999999999999975531110 000 011111223344445
Q ss_pred EE---EEEcCCCCEEEEeeC-CCcEEEEeCCCccEEEE--------Eeec---CCcEEEEEEccCCCEEEEecCCCcEEE
Q 005254 498 NS---LAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVT--------FRGH---KRGIWSVEFSPVDQVVITASGDKTIKI 562 (706)
Q Consensus 498 ~~---~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~--------~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i 562 (706)
.+ +.+..|...||+++. |+.|++||++....... +..| ...++++.....|.+|++.+.|+.|+.
T Consensus 218 ~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ 297 (720)
T KOG0321|consen 218 FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF 297 (720)
T ss_pred eeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE
Confidence 55 555568888998887 99999999987643322 2223 346788888888999988889999999
Q ss_pred EEcCCCc--eEEEEeecccC--EEEEEEEeCCCEEEEEeCCCCEEEEECCCCe-EEEEeccCCCcEEEEEEcCCC-CEEE
Q 005254 563 WSISDGS--CLKTFEGHTSS--VLRASFLTRGAQIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKKT-EMFA 636 (706)
Q Consensus 563 wd~~~~~--~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~ 636 (706)
|++.+.. ++..+.++... -..-..+||+.+|++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|.. .-++
T Consensus 298 ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~ 377 (720)
T KOG0321|consen 298 YNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVA 377 (720)
T ss_pred EeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCce
Confidence 9997643 34444443221 1233668999999999999999999998875 455667999999999998753 3578
Q ss_pred EEeCCCcEEEEECCchhHHH
Q 005254 637 TGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 637 ~~~~dg~i~vw~~~~~~~~~ 656 (706)
|++.|..+++|++..+.+..
T Consensus 378 TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 378 TCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred eeccCcceEEEeccCchhhc
Confidence 88999999999998777655
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.6e-24 Score=189.33 Aligned_cols=285 Identities=12% Similarity=0.132 Sum_probs=231.3
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC--ceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS--MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 428 (706)
...+.|.++.|.| ....+++++.++.+++|.+.. ...+..+.-...++.+.. +.|++...+++++....++.||+
T Consensus 211 ps~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~--f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 211 PSHGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAE--FAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCcCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceee--ecCCCceEEEecccceEEEEeec
Confidence 4567899999987 778999999999999998764 344555666677787777 88999966999999999999999
Q ss_pred CCceEEEEEe--CC-CcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 429 ESRCCVGVGT--GH-MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 429 ~~~~~~~~~~--~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
.+.+....-. ++ ...+....++++++ +++..+..|.|.+....+.. ........+.|..++|+.|
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~e-----------li~s~KieG~v~~~~fsSd 355 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKE-----------LITSFKIEGVVSDFTFSSD 355 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhh-----------hhheeeeccEEeeEEEecC
Confidence 9887655432 22 33566788899987 99999999999998876652 2222334567899999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCccEEEEEeecCC-cEEEEEEccCCCEEEEecCCCcEEEEEcCC------CceEEEEeecc
Q 005254 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR-GIWSVEFSPVDQVVITASGDKTIKIWSISD------GSCLKTFEGHT 578 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~ 578 (706)
++.|++.+.+|.|.+||++....+..+....+ .-++++.|+++.+||+|+..|.|.|||.++ .+++..+..-.
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt 435 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT 435 (514)
T ss_pred CcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh
Confidence 99999999999999999999988888774222 236788889999999999999999999653 46677777777
Q ss_pred cCEEEEEEEeCCCEEEEEeC--CCCEEEEECCCCeEEEEeccC---CCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 579 SSVLRASFLTRGAQIVSCGA--DGLVKLWTVRTGECIATYDKH---EDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 579 ~~i~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
..|+++.|++|.+.||.++. +..+++-.+.+......++.. -+.|+||+|||.+.+|+.|..+|.+.+|++.
T Consensus 436 t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 436 TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 89999999999999988775 568999998887777666643 3568999999999999999999999999874
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.6e-24 Score=197.04 Aligned_cols=216 Identities=17% Similarity=0.222 Sum_probs=174.0
Q ss_pred CCcEEEEeCCCce----EEEEEeCCCcCeEEEEEecCCCeEEEEecC---CCeEEEEEecCCCCCCCcccccceeEEEee
Q 005254 420 DNSVRLWDSESRC----CVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (706)
Q Consensus 420 dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 492 (706)
++.+..|.-.... -+...-.|...|..+.|+..|. +|++... ...|.|+++.... ....+..
T Consensus 496 ~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~----------sQ~PF~k 564 (733)
T KOG0650|consen 496 DAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRK----------SQSPFRK 564 (733)
T ss_pred cccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEeccccc----------ccCchhh
Confidence 3455666544211 1334456889999999999998 6666644 4578888887543 2223334
Q ss_pred cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC-ceE
Q 005254 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCL 571 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~ 571 (706)
..+.+.++.|+|...+|++++. ..|+|||+...+.+..+......|..++.+|.|..|+.++.|+.+..+|+.-. ++.
T Consensus 565 skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy 643 (733)
T KOG0650|consen 565 SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY 643 (733)
T ss_pred cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh
Confidence 5677899999999999998875 67999999998888888878888999999999999999999999999999754 567
Q ss_pred EEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC------CC---eEEEEeccCCCc----EEEEEEcCCCCEEEEE
Q 005254 572 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR------TG---ECIATYDKHEDK----IWALAVGKKTEMFATG 638 (706)
Q Consensus 572 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~------~~---~~~~~~~~~~~~----v~~~~~s~~~~~l~~~ 638 (706)
+++..|...+++++|++.-.++++|+.||++.||.-. .. -++..+++|... |....|+|...+|+++
T Consensus 644 k~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsA 723 (733)
T KOG0650|consen 644 KTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSA 723 (733)
T ss_pred HHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEec
Confidence 8888899999999999999999999999999998532 11 256777888765 8899999999999999
Q ss_pred eCCCcEEEE
Q 005254 639 GSDALVNLW 647 (706)
Q Consensus 639 ~~dg~i~vw 647 (706)
|.||+|++|
T Consensus 724 GAd~tirlf 732 (733)
T KOG0650|consen 724 GADGTIRLF 732 (733)
T ss_pred CCCceEEee
Confidence 999999998
No 146
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.8e-24 Score=178.75 Aligned_cols=289 Identities=21% Similarity=0.292 Sum_probs=209.2
Q ss_pred EEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeee
Q 005254 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 147 v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
-.|+.|++.|.. |+.|+.||.|.|||+.+...-+.+.+|..+|++++||+||+.|++++.|..+.+||+..+.++..+
T Consensus 26 a~~~~Fs~~G~~--lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDY--LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcce--eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 789999999887 999999999999999999988899999999999999999999999999999999999999988887
Q ss_pred cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccc
Q 005254 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (706)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (706)
....++....+.|...
T Consensus 104 rf~spv~~~q~hp~k~---------------------------------------------------------------- 119 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKR---------------------------------------------------------------- 119 (405)
T ss_pred EccCccceeeeccccC----------------------------------------------------------------
Confidence 7766666555554432
Q ss_pred eeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
+..++.--+..-.+.++..+
T Consensus 120 ------------------------------------------------------------n~~va~~~~~sp~vi~~s~~ 139 (405)
T KOG1273|consen 120 ------------------------------------------------------------NKCVATIMEESPVVIDFSDP 139 (405)
T ss_pred ------------------------------------------------------------CeEEEEEecCCcEEEEecCC
Confidence 11111111111111111111
Q ss_pred eeeEeeeCCcceEEEee--eeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCC-cCeEEEEEecCCCeEEEEecCC
Q 005254 387 SCSYVLAGHSEIVLCLD--TCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM-GAVGAVAFSKKLQNFLVSGSSD 463 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d 463 (706)
..........+.....+ ..+.+.++. +++|...|.+.+++..+.+++..++... ..|..+.++..|+ +++.-+.|
T Consensus 140 ~h~~Lp~d~d~dln~sas~~~fdr~g~y-IitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsD 217 (405)
T KOG1273|consen 140 KHSVLPKDDDGDLNSSASHGVFDRRGKY-IITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSD 217 (405)
T ss_pred ceeeccCCCccccccccccccccCCCCE-EEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCC
Confidence 11100000000000000 015666776 9999999999999999999998887666 7899999999988 89999999
Q ss_pred CeEEEEEecCCCCC---CCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCccEEEEEeecC-Cc
Q 005254 464 HTIKVWSFDGLSDD---AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVTFRGHK-RG 538 (706)
Q Consensus 464 ~~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~~ 538 (706)
..|+.|++...... .+.....+... .-+...-.+++|+.+|.|++.++. ...++||.-..|.+++.+.+.. ..
T Consensus 218 RvIR~ye~~di~~~~r~~e~e~~~K~qD--vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~ 295 (405)
T KOG1273|consen 218 RVIRTYEISDIDDEGRDGEVEPEHKLQD--VVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEE 295 (405)
T ss_pred ceEEEEehhhhcccCccCCcChhHHHHH--HHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhh
Confidence 99999998743211 00000000000 012233467899999999988774 3469999999999999999877 56
Q ss_pred EEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 539 IWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 539 v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
...+.|+|-...+++. ..|.+++|...
T Consensus 296 l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 296 LLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred eeecccccceeeeeec-cCCceEEEEee
Confidence 7889999988888887 77899999864
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.9e-23 Score=172.96 Aligned_cols=256 Identities=19% Similarity=0.397 Sum_probs=200.6
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC----ceEEEEEeCCCcCeEEEEEec-CCCeEEEEecCCCeEE
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIK 467 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~ 467 (706)
.+|.+-+.++. +..-|++ +++++.|+++.|||... ..+....+.|.+.|..+.|.+ .-...+++++.|+++.
T Consensus 10 s~h~DlihdVs--~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVS--FDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeee--ecccCce-eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 46778888888 8888888 99999999999999643 345666789999999999964 3334899999999999
Q ss_pred EEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC--CCCEEEEeeCCCcEEEEeCCCccEEE------EEe------
Q 005254 468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP--NDSLVCTGSQDRTACVWRLPDLVSVV------TFR------ 533 (706)
Q Consensus 468 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~------ 533 (706)
||.-..... ............+......|+.+.|.| -|-.||+++.||.++||+..+...+. .++
T Consensus 87 iWEE~~~~~-~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 87 IWEEQEKSE-EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeccccc-ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 998652221 112234556667778889999999999 47899999999999999876543222 222
Q ss_pred -ecCCcEEEEEEccC---CCEEEEecCC-----CcEEEEEcCCC----ceEEEEeecccCEEEEEEEeCC----CEEEEE
Q 005254 534 -GHKRGIWSVEFSPV---DQVVITASGD-----KTIKIWSISDG----SCLKTFEGHTSSVLRASFLTRG----AQIVSC 596 (706)
Q Consensus 534 -~~~~~v~~~~~s~~---~~~l~~~~~d-----g~i~iwd~~~~----~~~~~~~~~~~~i~~~~~s~~~----~~l~~~ 596 (706)
.+..+..|+.|+|. ..+||.|+.+ +.++||....+ ..+.++.+|..+|+.++|.|+- ..||++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 35667889999974 4678888766 47899987544 3456788899999999999963 368999
Q ss_pred eCCCCEEEEECCC--------------------CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 597 GADGLVKLWTVRT--------------------GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 597 ~~dg~i~iwd~~~--------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+.|| |+||.+.. -+.+..+..|+++|+.+.|.-.|..|.+.|.||++++|+..-..
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 9999 99999873 12455677999999999999999999999999999999765433
No 148
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.93 E-value=2.4e-20 Score=189.51 Aligned_cols=373 Identities=34% Similarity=0.599 Sum_probs=291.9
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe-EEEEeeCCCC-cEEEEEE-cCCCCceEEEE-EecCCeEEE
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF-CTHYFKGHKG-VVSSILF-HPDTDKSLLFS-GSDDATVRV 172 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~~~~l~~-~~~dg~i~v 172 (706)
.+..|...+..+.|.+.+..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ .+++.. .++. +..|+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcce-EEeccCCCCccEEE
Confidence 456789999999999999999999999999999999886 6666666443 7777777 676663 3444 455999999
Q ss_pred EECCC-CeeEEEeecccceEEEEEEecCCCEEEEEeC-CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccc
Q 005254 173 WDLLA-KKCVATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250 (706)
Q Consensus 173 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (706)
|+... ......+..|...|..++|+|++..+++++. ++.+++|+.....
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 189 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK----------------------------- 189 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-----------------------------
Confidence 99988 7888888999999999999999998888875 8888888875411
Q ss_pred ccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEE
Q 005254 251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (706)
T Consensus 190 -------------------------------------------------------------------------------- 189 (466)
T COG2319 190 -------------------------------------------------------------------------------- 189 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCC
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG 410 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 410 (706)
....+.+|...+.+++ +.+++
T Consensus 190 ---------------------------------------------------------~~~~~~~~~~~v~~~~--~~~~~ 210 (466)
T COG2319 190 ---------------------------------------------------------PLSTLAGHTDPVSSLA--FSPDG 210 (466)
T ss_pred ---------------------------------------------------------eEEeeccCCCceEEEE--EcCCc
Confidence 1112233566666666 55666
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEEE-EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCVG-VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 489 (706)
..++++++.|+.+++||...+..+. .+..|.... ...|++++. ++++++.|+.+++|+...... ....
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~---------~~~~ 279 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSS---------LLRT 279 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCc---------EEEE
Confidence 6446666899999999988887777 677787775 448999984 788999999999999986532 1222
Q ss_pred EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe--ecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcC
Q 005254 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSIS 566 (706)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~ 566 (706)
...|...+.++.+.|++..+++++.|+.+.+|+..+........ .|...+..+.|.+++..++.+ ..|+.+.+|++.
T Consensus 280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence 25678899999999988888889999889999998887777766 788889999994332556555 688999999998
Q ss_pred CCceEEEEeecccCEEEEEEEeCCCEEEE-EeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 005254 567 DGSCLKTFEGHTSSVLRASFLTRGAQIVS-CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVN 645 (706)
Q Consensus 567 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 645 (706)
........... ..+..+.+++ ...... +..++.+.+|+............+...+....+++++..+++++.++.+.
T Consensus 360 ~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (466)
T COG2319 360 TGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437 (466)
T ss_pred CCceeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEE
Confidence 77733333222 2278888888 544444 68899999999999888877766547899999999999999999999999
Q ss_pred EEECCc
Q 005254 646 LWHDST 651 (706)
Q Consensus 646 vw~~~~ 651 (706)
+|+...
T Consensus 438 ~~~~~~ 443 (466)
T COG2319 438 LWDLKT 443 (466)
T ss_pred EEeccC
Confidence 999987
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-24 Score=204.04 Aligned_cols=286 Identities=20% Similarity=0.258 Sum_probs=222.1
Q ss_pred EEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC---c
Q 005254 310 ATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS---M 386 (706)
Q Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~---~ 386 (706)
+...++...+++++ ...+.+|..........-....+.-....-...++.|..-..+++++++..|.|.+||+.. .
T Consensus 45 Is~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn 123 (839)
T KOG0269|consen 45 ISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN 123 (839)
T ss_pred EeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccc
Confidence 33444444444443 3445555555443222211111222223334556777777889999999999999999987 5
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeE
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 466 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 466 (706)
+.+..+..|...+.+++ |++....+|++|+.||.|++||++..+....+......|+.+.|+|...+.++++...|.+
T Consensus 124 k~l~~f~EH~Rs~~~ld--fh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~l 201 (839)
T KOG0269|consen 124 KLLTVFNEHERSANKLD--FHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYL 201 (839)
T ss_pred hhhhHhhhhccceeeee--eccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceE
Confidence 66668899999999999 8888888999999999999999999999999999999999999999888899999999999
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEE--EEEeecCCcEEEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV--VTFRGHKRGIWSVEF 544 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~~~~ 544 (706)
++||++... .....+.+|.++|.|+.|+|++.+||+|+.|+.|+|||..+.+.. .++. ...+|..+.|
T Consensus 202 qlWDlRqp~---------r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkW 271 (839)
T KOG0269|consen 202 QLWDLRQPD---------RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKW 271 (839)
T ss_pred EEeeccCch---------hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeee
Confidence 999998653 255667889999999999999999999999999999999865443 3333 4578999999
Q ss_pred ccCCCE-EEEec--CCCcEEEEEcCCC-ceEEEEeecccCEEEEEEEe-CCCEEEEEeCCCCEEEEECC
Q 005254 545 SPVDQV-VITAS--GDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 545 s~~~~~-l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~ 608 (706)
-|...+ ||+++ .|-.|+|||+... -+..++..|...++.++|.. |-..|.+++.||.|..-..+
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 997664 66654 4788999999755 45678888999999999965 44578899999987654443
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=2.6e-23 Score=183.01 Aligned_cols=306 Identities=17% Similarity=0.257 Sum_probs=224.8
Q ss_pred EECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC----eeEEEeecccceEEEEEEecCC-CEE
Q 005254 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLDKHFSRVTSMAITSDG-STL 203 (706)
Q Consensus 129 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l 203 (706)
.|+.+-......+.+.++|++++|+|..+..++++|...|+|-+||+.+. ..+..+..|.++|.+|.|+|.. ..+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 44555555666777999999999999988889999999999999999522 2455678899999999999954 578
Q ss_pred EEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCC
Q 005254 204 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (706)
Q Consensus 204 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 283 (706)
++.+.||+|+.-|++.......+..
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~------------------------------------------------------- 275 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSL------------------------------------------------------- 275 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhc-------------------------------------------------------
Confidence 8999999999988765321110000
Q ss_pred CeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeC
Q 005254 284 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 363 (706)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 363 (706)
T Consensus 276 -------------------------------------------------------------------------------- 275 (498)
T KOG4328|consen 276 -------------------------------------------------------------------------------- 275 (498)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE-EEEEeCCCc
Q 005254 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMG 442 (706)
Q Consensus 364 ~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~ 442 (706)
++ .......++ +..+... ++.+..=|.+.+||.+++.. ...+..|..
T Consensus 276 ~~-----------------------------d~~~fs~~d--~~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 276 DT-----------------------------DNIWFSSLD--FSAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred Cc-----------------------------cceeeeecc--ccCCCcc-EEEeecccceEEEEeecCCccchhhhhhhc
Confidence 00 000111222 4444555 56666666888999887654 666777888
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 522 (706)
.|++++++|..+.++++++.|++.+|||++....... +......|...|.+..|||.+-.|++.+.|..|+|||
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCCCC------cceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 9999999999999999999999999999987643222 2344567899999999999888899999999999999
Q ss_pred CC----CccEEEEEeecCC------cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc-CEEE-EEEEeCC
Q 005254 523 LP----DLVSVVTFRGHKR------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLR-ASFLTRG 590 (706)
Q Consensus 523 ~~----~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~-~~~s~~~ 590 (706)
.. ...+...+. |+. ......|.|+..++++|-.-..|-|+|-..++.+..+..... .|.+ ..|+|-+
T Consensus 398 ss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred cccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence 83 344444444 332 234568999999999999988999999988887877654332 4444 4889987
Q ss_pred CEEEE-EeCCCCEEEEECC
Q 005254 591 AQIVS-CGADGLVKLWTVR 608 (706)
Q Consensus 591 ~~l~~-~~~dg~i~iwd~~ 608 (706)
..+++ ++..|.|+||.-+
T Consensus 477 ~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 477 DTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cceeccCCccceEEEEecC
Confidence 74555 4556788888643
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=8.9e-24 Score=193.78 Aligned_cols=296 Identities=20% Similarity=0.295 Sum_probs=203.5
Q ss_pred EEEcc---CCCEEEEEeccCeEEEEECCCCeE------EEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeE
Q 005254 66 LALSP---DDKLLFSSGHSREIRVWDLSTLKC------LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC 136 (706)
Q Consensus 66 l~~s~---~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~ 136 (706)
..|++ ....||.+.++|.|.++|.+.... +..+..|...|..+.|-|....|++++.|.++++||+.++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55665 346789999999999999875432 355667999999999999777899999999999999999988
Q ss_pred EEE--eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe--------------------e-------EEEeecc
Q 005254 137 THY--FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--------------------C-------VATLDKH 187 (706)
Q Consensus 137 ~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------------------~-------~~~~~~~ 187 (706)
... +.+|.+.|.++||.|+ +..++++|+.||.|.|||++-.. . +.....+
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred ecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 776 8899999999999998 45689999999999999985322 0 0011123
Q ss_pred cceEEE---EEEecCCCEEEEEeC-CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcccccc
Q 005254 188 FSRVTS---MAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 263 (706)
Q Consensus 188 ~~~v~~---~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (706)
...|.+ +.+..|...|++++. |+.|+|||++............
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~--------------------------------- 260 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG--------------------------------- 260 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc---------------------------------
Confidence 333333 445556777888776 8888888887654332221100
Q ss_pred ceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceee
Q 005254 264 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL 343 (706)
Q Consensus 264 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (706)
............+++.++....|.++++.+.|+.|+.|++....
T Consensus 261 ------------------------------~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s------ 304 (720)
T KOG0321|consen 261 ------------------------------SDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS------ 304 (720)
T ss_pred ------------------------------ccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC------
Confidence 00000001112344555555555555555555555555544321
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
......+.++...-..+..+.+|++.. +++|+.|...
T Consensus 305 ------------------------------------------~sP~~~~sg~~~~sf~vks~lSpd~~~-l~SgSsd~~a 341 (720)
T KOG0321|consen 305 ------------------------------------------ISPVAEFSGKLNSSFYVKSELSPDDCS-LLSGSSDEQA 341 (720)
T ss_pred ------------------------------------------cCchhhccCcccceeeeeeecCCCCce-EeccCCCcce
Confidence 111223333333333344447788887 9999999999
Q ss_pred EEEeCCCce-EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 424 RLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 424 ~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
++|.+.+.+ ....+.+|.-.|++++|.|..-.-+++++.|..+++|++..+
T Consensus 342 yiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 342 YIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999998764 344577899999999998876556889999999999999655
No 152
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.92 E-value=4.6e-20 Score=187.43 Aligned_cols=371 Identities=34% Similarity=0.609 Sum_probs=283.3
Q ss_pred eecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe-EEEEeeccCC-CeEEEEE-CCCCC-EEEEecC-CCcEEEE
Q 005254 55 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CLRSWKGHDG-PAIGMAC-HPSGG-LLATAGA-DRKVLVW 129 (706)
Q Consensus 55 ~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~-s~~~~-~l~~~~~-d~~i~vw 129 (706)
.+..|...|.++.+.+.+..++.++.++.+.+|+...+. .+..+..+.. .+..+.+ ++++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 466789999999999999999999999999999999887 7777776443 7888887 88888 5555444 8999999
Q ss_pred ECCC-CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec-CCeEEEEECCCCeeEEEeecccceEEEEEEecCCC-EEEEE
Q 005254 130 DVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD-DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS-TLISA 206 (706)
Q Consensus 130 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 206 (706)
+... ......+..|...|..++|+|++.. +++++. ++.+++|+...+..+..+.+|...+.+++|+|++. .++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKL--LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCE--EEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 9998 7888889999999999999999874 777775 99999999999889999999999999999999998 55555
Q ss_pred eCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeE
Q 005254 207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286 (706)
Q Consensus 207 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 286 (706)
+.|+.+++||...+.....
T Consensus 218 ~~d~~i~~wd~~~~~~~~~------------------------------------------------------------- 236 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRS------------------------------------------------------------- 236 (466)
T ss_pred cCCCcEEEEECCCCcEEee-------------------------------------------------------------
Confidence 8899999997653221110
Q ss_pred EeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCC
Q 005254 287 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 366 (706)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 366 (706)
T Consensus 237 -------------------------------------------------------------------------------- 236 (466)
T COG2319 237 -------------------------------------------------------------------------------- 236 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE-EEEEeCCCcCeE
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMGAVG 445 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~ 445 (706)
.+.+|.... ... +.+++.. +++++.|+.+++|+...... +.....|...+.
T Consensus 237 ------------------------~~~~~~~~~-~~~--~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 288 (466)
T COG2319 237 ------------------------TLSGHSDSV-VSS--FSPDGSL-LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288 (466)
T ss_pred ------------------------ecCCCCcce-eEe--ECCCCCE-EEEecCCCcEEEeeecCCCcEEEEEecCCccEE
Confidence 011111111 001 5555544 66888999999999886654 444467789999
Q ss_pred EEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE--EeecCcceEEEEEcCCCCEEEEe-eCCCcEEEEe
Q 005254 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV--VAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWR 522 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d 522 (706)
++.|.|++. .+++++.|+.+.+|+..... .... ...|...+..+.+.+++..++.+ ..|+.+.+|+
T Consensus 289 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 289 SVAFSPDGK-LLASGSSDGTVRLWDLETGK----------LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred EEEECCCCC-EEEEeeCCCcEEEEEcCCCc----------eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 999999766 55558888889999876543 1222 23566678889884343556555 6788999999
Q ss_pred CCCccEEEEEeecCCcEEEEEEccCCCEEEE-ecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCC
Q 005254 523 LPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 601 (706)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 601 (706)
........... ....+..+.+++ ...... +..++.+.+|+............+...+....+++++..+++++.++.
T Consensus 358 ~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (466)
T COG2319 358 LRTGKPLKTLE-GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435 (466)
T ss_pred cCCCceeEEec-CCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCc
Confidence 98877333222 222288999998 544444 688999999999888877776644378899999999999999999999
Q ss_pred EEEEECCC
Q 005254 602 VKLWTVRT 609 (706)
Q Consensus 602 i~iwd~~~ 609 (706)
+++|+..+
T Consensus 436 ~~~~~~~~ 443 (466)
T COG2319 436 IRLWDLKT 443 (466)
T ss_pred EEEEeccC
Confidence 99999988
No 153
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.2e-22 Score=187.18 Aligned_cols=541 Identities=14% Similarity=0.163 Sum_probs=336.5
Q ss_pred ccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccC------------CCEEEEEeccCeEEEEEC
Q 005254 22 GGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPD------------DKLLFSSGHSREIRVWDL 89 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~------------~~~l~s~~~d~~i~iwd~ 89 (706)
.+++.++|.| ++|+|+++.|.+.|..+.+.++.++-|...|+.+.|.|- .-+||++...|.|.+||.
T Consensus 18 ~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 3478888888 999999999999999999999999999999999999872 236778888999999999
Q ss_pred CCCeEEEEeeccCCCeEEEEECC---CC-CEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe
Q 005254 90 STLKCLRSWKGHDGPAIGMACHP---SG-GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 165 (706)
..+..+..+..|..++..++|-+ +. ..|++......|.+||..+|+.............|+.+.|-...++.+.|+
T Consensus 97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s 176 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGS 176 (1062)
T ss_pred hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEcc
Confidence 99999999999999999999977 33 467777777899999999999998887777778889999976666666655
Q ss_pred cCCeEEEEECC-------CCeeEEEeecccc-------------------------eEEEEEEecCCCEEEEEeCCCEEE
Q 005254 166 DDATVRVWDLL-------AKKCVATLDKHFS-------------------------RVTSMAITSDGSTLISAGRDKVVN 213 (706)
Q Consensus 166 ~dg~i~vwd~~-------~~~~~~~~~~~~~-------------------------~v~~~~~~~~~~~l~~~~~dg~i~ 213 (706)
. |.+.+-+.- .++..+.-..|.. ....++|+|.-+.++.......+.
T Consensus 177 ~-g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prell 255 (1062)
T KOG1912|consen 177 K-GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELL 255 (1062)
T ss_pred C-ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceE
Confidence 4 445544431 1233333222221 012356677766666666778888
Q ss_pred EEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCc
Q 005254 214 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 293 (706)
Q Consensus 214 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 293 (706)
++|++-..++..++.+..
T Consensus 256 v~dle~~~~l~vvpier~-------------------------------------------------------------- 273 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVPIERG-------------------------------------------------------------- 273 (1062)
T ss_pred EEcchhhceeEEEEeccC--------------------------------------------------------------
Confidence 888876666655554332
Q ss_pred cccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceee---------EEeeEecc-cCceeeEeeEeC
Q 005254 294 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL---------ILSKRLVG-YNEEILDLKFLG 363 (706)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~v~~~~~~~ 363 (706)
...+......|..+.+++.-.||.+.+|.....++..... .....+.. ..-.+......|
T Consensus 274 ----------~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cP 343 (1062)
T KOG1912|consen 274 ----------GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCP 343 (1062)
T ss_pred ----------CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCC
Confidence 1112222233344456666666666666555433221110 00000000 011122233345
Q ss_pred CCCcEEEEEecCCcEEEEeCCCceeeEe-------------------------------eeCCcceEEEeeee-------
Q 005254 364 EEEQYLAVATNIEQVQVYDLSSMSCSYV-------------------------------LAGHSEIVLCLDTC------- 405 (706)
Q Consensus 364 ~~~~~l~~~~~~~~i~~~d~~~~~~~~~-------------------------------~~~~~~~i~~~~~~------- 405 (706)
.+...+++-..+|...+|.+.+++.... -.+|.....+..+-
T Consensus 344 s~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~ 423 (1062)
T KOG1912|consen 344 STPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTK 423 (1062)
T ss_pred CChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccce
Confidence 5566666666777777777764321110 01233333332210
Q ss_pred -ee-cCC------CEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec----------CCCeEE
Q 005254 406 -AL-SSG------KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS----------SDHTIK 467 (706)
Q Consensus 406 -~~-~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~d~~i~ 467 (706)
.. |.+ ..+++.|...|+|.++|+.++.....+..|.+.|.++.|..... +++.+ .-+.+.
T Consensus 424 ~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss--lvSfsys~~n~~sg~vrN~l~ 501 (1062)
T KOG1912|consen 424 VENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS--LVSFSYSHVNSASGGVRNDLV 501 (1062)
T ss_pred eecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee--EEEeeeccccccccceeeeEE
Confidence 11 111 23688999999999999999999999999999999999987754 44332 234567
Q ss_pred EEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEE----------EE----e
Q 005254 468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV----------TF----R 533 (706)
Q Consensus 468 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~----~ 533 (706)
+-|++++-... ..........+|+.+..|..|+||+....+.-+.+||+++...++ .+ .
T Consensus 502 vtdLrtGlsk~-------fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~ 574 (1062)
T KOG1912|consen 502 VTDLRTGLSKR-------FRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP 574 (1062)
T ss_pred EEEcccccccc-------cccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc
Confidence 77777763211 111223456789999999999999999999999999985432111 00 0
Q ss_pred ec------------------------CCcEE---------------------------EEEEccCCCEEEEecCCCcEEE
Q 005254 534 GH------------------------KRGIW---------------------------SVEFSPVDQVVITASGDKTIKI 562 (706)
Q Consensus 534 ~~------------------------~~~v~---------------------------~~~~s~~~~~l~~~~~dg~i~i 562 (706)
.| ...+. .++| .+..|+.|..+|.+.+
T Consensus 575 ~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~ 652 (1062)
T KOG1912|consen 575 KHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVV 652 (1062)
T ss_pred CCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeE
Confidence 00 01111 1222 2567999999999999
Q ss_pred EEcCCCceEEEE--eecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 005254 563 WSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 563 wd~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 640 (706)
||+...+..... ..|........+.|....++.--.|+ +-+||.+.-..+..+.+-...-..+...-++..=.....
T Consensus 653 WDlg~R~SRg~~d~p~~ra~~l~~~~ipG~~~~lvl~~d~-~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l~~ 731 (1062)
T KOG1912|consen 653 WDLGRRQSRGVRDSPDPRAHSLTFPQIPGDHTTLVLELDW-LPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVLPN 731 (1062)
T ss_pred EecccccccCccCCCCchhhheecccCCCCceEEEEecCc-ceecccccceeeeeeccCCcceEEEEEEecccCceecCC
Confidence 998543222211 11222233333344333344444444 778888777777777554444444443333332222233
Q ss_pred CCcEEEEE
Q 005254 641 DALVNLWH 648 (706)
Q Consensus 641 dg~i~vw~ 648 (706)
|.++++-.
T Consensus 732 d~~~Rf~~ 739 (1062)
T KOG1912|consen 732 DNKERFRV 739 (1062)
T ss_pred CCceeEEe
Confidence 44555543
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.3e-22 Score=167.74 Aligned_cols=272 Identities=16% Similarity=0.283 Sum_probs=196.5
Q ss_pred eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC----eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEE
Q 005254 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG----FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174 (706)
Q Consensus 99 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 174 (706)
.+|..-|.++.|.+.|+++|+|+.|++|+|||.++. .+....+.|.+.|..+.|.+..=+.++++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 458888999999999999999999999999996443 4566788999999999998766667899999999999996
Q ss_pred CCC---------CeeEEEeecccceEEEEEEecC--CCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCC
Q 005254 175 LLA---------KKCVATLDKHFSRVTSMAITSD--GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA 243 (706)
Q Consensus 175 ~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (706)
-.. -....++....+.|+.+.|.|. |-.|++++.||.+++|+..+...+...+....+..+..
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~------ 163 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID------ 163 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC------
Confidence 421 1234556677789999999985 66899999999999998754322221111110000000
Q ss_pred cccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEe
Q 005254 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 323 (706)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 323 (706)
T Consensus 164 -------------------------------------------------------------------------------- 163 (361)
T KOG2445|consen 164 -------------------------------------------------------------------------------- 163 (361)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEee
Q 005254 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD 403 (706)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~ 403 (706)
....+..+..|+.
T Consensus 164 -------------------------------------------------------------------pp~~~~~~~~Cvs 176 (361)
T KOG2445|consen 164 -------------------------------------------------------------------PPGKNKQPCFCVS 176 (361)
T ss_pred -------------------------------------------------------------------CcccccCcceEEe
Confidence 0111223344555
Q ss_pred eeeecCCCEEEEEeeCC-----CcEEEEeCCCc----eEEEEEeCCCcCeEEEEEecCCC---eEEEEecCCCeEEEEEe
Q 005254 404 TCALSSGKILIVTGSKD-----NSVRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQ---NFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 404 ~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~d~~i~i~~~ 471 (706)
|+.+.-...++++|+.+ +.+.||....+ ..+..+..|..+|+.++|.|+-. .+|++++.|| |+||++
T Consensus 177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 44444444456666655 46777765443 24456778999999999999643 4799999999 999999
Q ss_pred cCCC----------CCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 472 DGLS----------DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 472 ~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
.... .......+......+..|+..|..+.|+-.|..|++.+.||.|++|...
T Consensus 256 ~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 256 KVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 8421 1222234455566678899999999999999999999999999999764
No 155
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.2e-25 Score=209.06 Aligned_cols=221 Identities=29% Similarity=0.524 Sum_probs=197.7
Q ss_pred EEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec
Q 005254 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (706)
++.+...-.+++||.+. +..|...+.++..-..++ .+++|+.|..+-+|.+.... ....+.+|
T Consensus 7 ~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~----------~i~S~~~h 69 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPN----------AITSLTGH 69 (825)
T ss_pred cceeeeeeccccccchh------hhhhhhhhceeeeeccce-eeccCCCceeeccccccCCc----------hhheeecc
Confidence 34444455677887653 345777777777744444 89999999999999987542 33447899
Q ss_pred CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
..+|.++.|+++..+|++|+.+|+|++||+..++.+.++.+|...+.++.|+|-+.+.+.|+.|+.+++||++...|...
T Consensus 70 espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 70 ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred EeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 574 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 574 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
+.+|...+..+.|+|+|++++.+++|..++|||+..|+.+..|..|.+.+.++.|+|..-++++|+.|+++++||+++
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999984
No 156
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.8e-23 Score=172.22 Aligned_cols=285 Identities=17% Similarity=0.232 Sum_probs=223.7
Q ss_pred eeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEE
Q 005254 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 435 (706)
Q Consensus 356 v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 435 (706)
..++.|++ .+.++|+|+.+|.+.+||+.+......+.+|..+|.++. ++++++. |++++.|..+.+||+..|.++.
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~--WS~dgr~-LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLC--WSRDGRK-LLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEE--ecCCCCE-eeeecCCceeEEEeccCCCcee
Confidence 45666665 899999999999999999999999999999999999998 8888888 9999999999999999999888
Q ss_pred EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC
Q 005254 436 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD 515 (706)
Q Consensus 436 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 515 (706)
.+. ..++|....|+|..++..++.-.+..-.+-++....... . +...-...+....+..|.+.|+++++|...
T Consensus 102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~---L---p~d~d~dln~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV---L---PKDDDGDLNSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee---c---cCCCccccccccccccccCCCCEEEEecCc
Confidence 776 568999999999887777766666555666655321100 0 000000011112234688899999999999
Q ss_pred CcEEEEeCCCccEEEEEeecC-CcEEEEEEccCCCEEEEecCCCcEEEEEcCCC-------ce--EEEEee--cccCEEE
Q 005254 516 RTACVWRLPDLVSVVTFRGHK-RGIWSVEFSPVDQVVITASGDKTIKIWSISDG-------SC--LKTFEG--HTSSVLR 583 (706)
Q Consensus 516 g~i~i~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~--~~~~~~--~~~~i~~ 583 (706)
|.+.++|..+.+.+..++-.. ..|..+.++..|+.|+..+.|..||.|+++.- ++ .+++.. ....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999999999999998888766 78999999999999999999999999998621 11 111110 1234567
Q ss_pred EEEEeCCCEEEEEeC-CCCEEEEECCCCeEEEEeccCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 584 ASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHE-DKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 584 ~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
++||.+|.|++.++. ...++||.-..|.+++.+.|.. .....+.|+|-...+++. ..|.+++|.....
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 899999999987764 3589999999999999999877 567789999999888877 6889999987554
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=7.8e-23 Score=172.05 Aligned_cols=316 Identities=20% Similarity=0.301 Sum_probs=228.1
Q ss_pred eecCCCccEEEEEEcc-----CCCEEEEEeccCeEEEEECCCCe---EEEEee--ccCCCeEEEEECCC----CCEEEEe
Q 005254 55 TIEGGSDTITALALSP-----DDKLLFSSGHSREIRVWDLSTLK---CLRSWK--GHDGPAIGMACHPS----GGLLATA 120 (706)
Q Consensus 55 ~l~~~~~~i~~l~~s~-----~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~--~~~~~v~~~~~s~~----~~~l~~~ 120 (706)
..+.|..+|..++|.+ .-+.+|+++.+ .+.+|.....- .++... .|......++|+-| ..+||++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 4457889999999985 23566666655 78999876433 333332 26677888888764 4589999
Q ss_pred cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe---ecccceEEEEEEe
Q 005254 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVTSMAIT 197 (706)
Q Consensus 121 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~ 197 (706)
+.-|.|+|.|+.+++....+.+|...|..+.|+|+ +.+++++++.|..|++|++++..++..+ .+|.+.|.++.|+
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~-~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD-RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCC-CCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 99999999999999999999999999999999998 5568999999999999999999999887 5799999999999
Q ss_pred cCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEE
Q 005254 198 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR 277 (706)
Q Consensus 198 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 277 (706)
++|.+++++|.|..+++|++...+....+... ..+.+++....
T Consensus 191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s-----~~~~~~~t~~p-------------------------------- 233 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELS-----ITYSPNKTTRP-------------------------------- 233 (385)
T ss_pred CCCCeeeccCCcceEEEEecChhHHhhhhhhh-----cccCCCCccCc--------------------------------
Confidence 99999999999999999999865543332211 11112211000
Q ss_pred EEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceee
Q 005254 278 MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL 357 (706)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 357 (706)
.|.....+.......-|...|-
T Consensus 234 ----------------------------------------------------------fpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 234 ----------------------------------------------------------FPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ----------------------------------------------------------CCccccccccccccccccchHH
Confidence 0000000111112233556666
Q ss_pred EeeEeCCCCcEEEEEecCCcEEEEeCCC-ce-------------eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 358 DLKFLGEEEQYLAVATNIEQVQVYDLSS-MS-------------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~~i~~~d~~~-~~-------------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
++.|.. +++++-+.++.|..|.... .+ ....+.-....+.-+.+.+.+-.+. |+.|...|.+
T Consensus 256 Cvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~-la~gnq~g~v 331 (385)
T KOG1034|consen 256 CVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM-LALGNQSGKV 331 (385)
T ss_pred HHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH-HhhccCCCcE
Confidence 777754 6777777888999998721 11 1223334455666677667777777 9999999999
Q ss_pred EEEeCCCceEEE----EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEec
Q 005254 424 RLWDSESRCCVG----VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 424 ~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 472 (706)
.+||++...+.. .-......|...+|+.++. +|+....|++|.-||.-
T Consensus 332 ~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 332 YVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEee
Confidence 999998765521 1123456788999999988 88889999999988853
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=8.9e-23 Score=179.63 Aligned_cols=291 Identities=21% Similarity=0.254 Sum_probs=225.4
Q ss_pred eEecccCceeeEeeEeCCCC-cEEEEEecCCcEEEEeCCC----ceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCC
Q 005254 347 KRLVGYNEEILDLKFLGEEE-QYLAVATNIEQVQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 421 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~-~~l~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg 421 (706)
.....+.+.|.+++|.|... .++++|...|+|-+||+.+ ......+..|..+|.++. |+|.+...+++.+.||
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~--F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLK--FSPANTSQIYSSSYDG 257 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceE--ecCCChhheeeeccCc
Confidence 44456788999999999877 8899999999999999953 234567888999999999 8888888899999999
Q ss_pred cEEEEeCCCceEEEEEeC--CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEE
Q 005254 422 SVRLWDSESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (706)
+|++-|+++...-..+.. ....+..+.|+.+.+ .++.+..=|...+||++.... ......-|...|++
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s---------~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGS---------EYENLRLHKKKITS 327 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCc---------cchhhhhhhcccce
Confidence 999999988754433333 455677788888776 566666666999999987643 23334457778999
Q ss_pred EEEcCC-CCEEEEeeCCCcEEEEeCCCcc----EEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC----CCce
Q 005254 500 LAVAPN-DSLVCTGSQDRTACVWRLPDLV----SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS----DGSC 570 (706)
Q Consensus 500 ~~~s~~-~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~----~~~~ 570 (706)
++++|. ..+|++++.|++.+|||++... ++.....|...|.+..|||++..|++.+.|..|+|||.. ...+
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence 999995 4688999999999999997542 234445699999999999998889999999999999983 3334
Q ss_pred EEEEeeccc------CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCC-cEEE-EEEcCCCCEEE-EEeCC
Q 005254 571 LKTFEGHTS------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED-KIWA-LAVGKKTEMFA-TGGSD 641 (706)
Q Consensus 571 ~~~~~~~~~------~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~-~~~s~~~~~l~-~~~~d 641 (706)
..++. |.. ......|.|+..++++|-.-..|-|+|-..++.+..+..... .|.+ ..|+|-+.-++ -++..
T Consensus 408 ~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 408 LGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS 486 (498)
T ss_pred cceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence 44444 432 234568999999999999999999999998888888654333 5555 47899887444 45567
Q ss_pred CcEEEEECC
Q 005254 642 ALVNLWHDS 650 (706)
Q Consensus 642 g~i~vw~~~ 650 (706)
|.|.||.-+
T Consensus 487 Gki~vft~k 495 (498)
T KOG4328|consen 487 GKIYVFTNK 495 (498)
T ss_pred ceEEEEecC
Confidence 888888644
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=1.7e-22 Score=170.03 Aligned_cols=291 Identities=19% Similarity=0.273 Sum_probs=219.2
Q ss_pred eEecccCceeeEeeEeC----CCCcEEEEEecCCcEEEEeCCCceeeEeee-----CCcceEEEeeeeeecC-CCEEEEE
Q 005254 347 KRLVGYNEEILDLKFLG----EEEQYLAVATNIEQVQVYDLSSMSCSYVLA-----GHSEIVLCLDTCALSS-GKILIVT 416 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~----~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~-~~~~l~~ 416 (706)
+....++.++.+++|.+ +..+.+++.+ ...+.+|.....--+..++ .+.......+|++... ++.++++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34445677888888863 2334444444 4778888876544333322 2455566677666655 5778999
Q ss_pred eeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE---Eeec
Q 005254 417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV---VAAH 493 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~---~~~~ 493 (706)
++.-|.|++.|+.+++....+.+|...|..+.+.|+..+++++++.|..|++|++++.. +... ..+|
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~----------Cv~VfGG~egH 180 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV----------CVAVFGGVEGH 180 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe----------EEEEecccccc
Confidence 99999999999999999999999999999999999998999999999999999998753 4433 4679
Q ss_pred CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE------E----------------E------EEeecCCcEEEEEEc
Q 005254 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS------V----------------V------TFRGHKRGIWSVEFS 545 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~------~----------------~------~~~~~~~~v~~~~~s 545 (706)
...|.++.|+++|.++++++.|.++++|++...+. . . +-.-|...|-|+.|-
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 99999999999999999999999999999873211 0 0 112356666666665
Q ss_pred cCCCEEEEecCCCcEEEEEcC-CC-------------ceEEEEeecccCEEEEEEE--eCCCEEEEEeCCCCEEEEECCC
Q 005254 546 PVDQVVITASGDKTIKIWSIS-DG-------------SCLKTFEGHTSSVLRASFL--TRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 546 ~~~~~l~~~~~dg~i~iwd~~-~~-------------~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
|.++++-+-++.|..|... -. ..+.++......|.-+.|+ |-++.||.|...|.|++||++.
T Consensus 261 --gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 261 --GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN 338 (385)
T ss_pred --hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCC
Confidence 6789998999999999861 11 1234444455566666655 5578899999999999999998
Q ss_pred CeEEE--Eec--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 610 GECIA--TYD--KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 610 ~~~~~--~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.++.. ++. .....|...+||.|+..|+....|++|.-||.-
T Consensus 339 ~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 339 NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 77631 121 224578999999999999999999999999853
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-22 Score=180.57 Aligned_cols=285 Identities=17% Similarity=0.243 Sum_probs=214.1
Q ss_pred CeEEEEECCCCeEEEEeeccC--CCeEEEEECCCCCE-EEEecCCCcEEEEECCCC--eE--EEEeeCCCCcEEEEEEcC
Q 005254 82 REIRVWDLSTLKCLRSWKGHD--GPAIGMACHPSGGL-LATAGADRKVLVWDVDGG--FC--THYFKGHKGVVSSILFHP 154 (706)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~-l~~~~~d~~i~vw~~~~~--~~--~~~~~~~~~~v~~~~~~~ 154 (706)
..+++||....+....+..|. ..+.++.|+....+ +++.+.|..+++|.-... +. +....+. .-.|++...
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s 89 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACAS 89 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhh
Confidence 369999998776655554433 35889999887642 233456888999975433 11 1112221 223333333
Q ss_pred CCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeee
Q 005254 155 DTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEA 234 (706)
Q Consensus 155 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 234 (706)
. ..++++|+..+.|+|||++...+.+.+++|...|+++.+.....+|++++..|.|.+..+.++.....+...
T Consensus 90 ~--S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~----- 162 (673)
T KOG4378|consen 90 Q--SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID----- 162 (673)
T ss_pred c--ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC-----
Confidence 2 245999999999999999988888899999999999999999999999999999999887765432221110
Q ss_pred EEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEcc
Q 005254 235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLP 314 (706)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (706)
T Consensus 163 -------------------------------------------------------------------------------- 162 (673)
T KOG4378|consen 163 -------------------------------------------------------------------------------- 162 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeC
Q 005254 315 SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG 394 (706)
Q Consensus 315 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~ 394 (706)
T Consensus 163 -------------------------------------------------------------------------------- 162 (673)
T KOG4378|consen 163 -------------------------------------------------------------------------------- 162 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE-EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 395 ~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
....+.-+. +++..+.+|.+++.+|.|.+||.....++.. ...|..+...++|+|....++++.+.|..|.+||...
T Consensus 163 sgqsvRll~--ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 163 SGQSVRLLR--YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred CCCeEEEee--cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 000112233 6677777899999999999999998777655 4579999999999999998999999999999999975
Q ss_pred CCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC-ccEEEEEeecCCcEEEEEEccCC
Q 005254 474 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVD 548 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~ 548 (706)
.. .........+.+.++|+++|.+|++|...|.|..||++. ..++..+..|...|++++|-|..
T Consensus 241 ~~-----------s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 241 QA-----------STDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cc-----------ccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 42 222233456789999999999999999999999999985 46788888999999999998753
No 161
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=1.3e-21 Score=169.70 Aligned_cols=164 Identities=23% Similarity=0.404 Sum_probs=141.9
Q ss_pred CccEEEEEEccCCC-EEEEEeccCeEEEEECCCC---------eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEE
Q 005254 60 SDTITALALSPDDK-LLFSSGHSREIRVWDLSTL---------KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129 (706)
Q Consensus 60 ~~~i~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 129 (706)
..+|..+.|.++.. .||+|+.|..|+||-+..+ +.+..+..|...|+++.|+|+|..||+|+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46889999999887 9999999999999988543 2445677899999999999999999999999999999
Q ss_pred ECC--------C--------CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEE
Q 005254 130 DVD--------G--------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTS 193 (706)
Q Consensus 130 ~~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 193 (706)
... + -.....+.+|...|..++|+|++.. +++++.|..+++||+..|.....+..|...+..
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~--l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF--LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce--eeeeeccceEEEEEeccceeEeeccccccccce
Confidence 876 2 1234567789999999999998776 999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEeCCCEEEEEeCCCCcceee
Q 005254 194 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLT 225 (706)
Q Consensus 194 ~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 225 (706)
++|.|-++++++-+.|...+.+.+...+.+..
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~ 202 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR 202 (434)
T ss_pred eecchhhhhhhhhccCcccceeeeeeeeeeee
Confidence 99999999999999998777777665544433
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=173.42 Aligned_cols=248 Identities=17% Similarity=0.309 Sum_probs=189.0
Q ss_pred eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC----------------ceEEEEEeCCCcCeEEEEEecCCCe
Q 005254 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----------------RCCVGVGTGHMGAVGAVAFSKKLQN 455 (706)
Q Consensus 392 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~ 455 (706)
...|.+.+..+...... +..+.++-+..|.|.||++.. .+++.++.+|...=.+++|||-...
T Consensus 147 ~i~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred ccccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 34455555555522222 445578888999999999652 3456677889999999999995444
Q ss_pred EEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC-CCEEEEeeCCCcEEEEeCCCcc--EEEEE
Q 005254 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPDLV--SVVTF 532 (706)
Q Consensus 456 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~--~~~~~ 532 (706)
.|++|.--+.|++|....+.-.. ....+.+|...|..++|||. ...+++|+-||+|+|||++.+. .....
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~v-------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~ 298 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKV-------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST 298 (440)
T ss_pred ccccCccccceEeeeeccCceee-------cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe
Confidence 68999989999999987653111 12334569999999999995 4688999999999999999872 22334
Q ss_pred eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC---CceEEEEeecccCEEEEEEEeC-CCEEEEEeCCCCEEEEECC
Q 005254 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD---GSCLKTFEGHTSSVLRASFLTR-GAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 533 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~ 608 (706)
+.|.+.|+.+.|+....+||+|+.||+++|||++. ++++..++.|..+|+++.|+|. ...+++++.|..|.+||+.
T Consensus 299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 78999999999999988999999999999999864 5778999999999999999985 4578889999999999996
Q ss_pred CCeE-----------EE-----EeccC--CCcEEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 005254 609 TGEC-----------IA-----TYDKH--EDKIWALAVGKKT-EMFATGGSDALVNLWH 648 (706)
Q Consensus 609 ~~~~-----------~~-----~~~~~--~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~ 648 (706)
.-.- +. -+--| ...+..+.|++.- .+|++.+.|| +.||.
T Consensus 379 vE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 379 VEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred ccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 2110 10 11123 3467788998864 4788888898 66665
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=3.8e-22 Score=167.56 Aligned_cols=235 Identities=17% Similarity=0.284 Sum_probs=181.1
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEEEEEeC--CCc---CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCVGVGTG--HMG---AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
..++++.+.+.-|.+||.-+|+....+.. |.. ...+++|+|||. .|+ ++....|++||+............
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlf-aGykrcirvFdt~RpGr~c~vy~t-- 198 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLF-AGYKRCIRVFDTSRPGRDCPVYTT-- 198 (406)
T ss_pred cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEe-ecccceEEEeeccCCCCCCcchhh--
Confidence 33488888899999999999988776653 323 345799999998 444 556789999999543221111000
Q ss_pred eeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CCcEEEE
Q 005254 486 AKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIW 563 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw 563 (706)
...-..+..+-+.+++|+| +...+++|+....+-||.-..+.++..+-+|.+.|+.++|.++|+.|++|.. |-.|..|
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW 278 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence 0011233456789999999 4569999999999999999999999999999999999999999999999876 6789999
Q ss_pred EcCCC-ceEEEEeeccc-CEEEE--EEEeCCCEEEEEeCCCCEEEEECCC-CeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 005254 564 SISDG-SCLKTFEGHTS-SVLRA--SFLTRGAQIVSCGADGLVKLWTVRT-GECIATYDKHEDKIWALAVGKKTEMFATG 638 (706)
Q Consensus 564 d~~~~-~~~~~~~~~~~-~i~~~--~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 638 (706)
|++.. .++..+..|.+ .-..+ ...|++++|++|+.||.|++||+++ |+.+..+..|...++.++++|--.+++|+
T Consensus 279 DiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 279 DIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred eehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeec
Confidence 99754 45666666665 22334 4468899999999999999999998 78888888999999999999998888888
Q ss_pred eCCCcEEEEECCch
Q 005254 639 GSDALVNLWHDSTA 652 (706)
Q Consensus 639 ~~dg~i~vw~~~~~ 652 (706)
+.. ++|...+.
T Consensus 359 sGq---r~f~~~~d 369 (406)
T KOG2919|consen 359 SGQ---RIFKYPKD 369 (406)
T ss_pred cCc---eeecCCCc
Confidence 755 55555544
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=2.5e-22 Score=178.57 Aligned_cols=295 Identities=19% Similarity=0.244 Sum_probs=216.3
Q ss_pred CEEEEeeCCeEEEEEccCCeEEEeecCC--CccEEEEEEccCCCE-EEEEeccCeEEEEECCC--CeEEEEeeccCCCeE
Q 005254 32 SFIACACGESINIVDLSNASIKSTIEGG--SDTITALALSPDDKL-LFSSGHSREIRVWDLST--LKCLRSWKGHDGPAI 106 (706)
Q Consensus 32 ~~l~~~~~~~i~i~d~~~~~~~~~l~~~--~~~i~~l~~s~~~~~-l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~ 106 (706)
++.++.+++.+.+||+...+....+-.| .-.+.++.|+....+ +|+.+.|..|++|.-.. ++....-+.....-.
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~ 83 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAF 83 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHH
Confidence 4677777889999999876655444433 235899999987742 23445688899996422 222221111222344
Q ss_pred EEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec
Q 005254 107 GMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK 186 (706)
Q Consensus 107 ~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 186 (706)
|++......|+++|+..+.|+|||++...+.+.+++|...|+++.+.....+ +++++..|.|.|..+.++.....+..
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~Dey--iAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEY--IASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcce--eEEeccCCcEEEEecccCccccceec
Confidence 5555555589999999999999999987778888999999999999887665 99999999999999999888877765
Q ss_pred c-cceEEEEEEecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccc
Q 005254 187 H-FSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264 (706)
Q Consensus 187 ~-~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
. ...|.-+.|++..+ +|.+++.+|.|.+||+........
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~--------------------------------------- 202 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH--------------------------------------- 202 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc---------------------------------------
Confidence 4 34566889998766 455678889999999865432211
Q ss_pred eEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeE
Q 005254 265 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 344 (706)
Q Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (706)
T Consensus 203 -------------------------------------------------------------------------------- 202 (673)
T KOG4378|consen 203 -------------------------------------------------------------------------------- 202 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
....|..+...+. |+|.+..++++.+.|..|.
T Consensus 203 ----------------------------------------------~~~~HsAP~~gic--fspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 203 ----------------------------------------------ASEAHSAPCRGIC--FSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred ----------------------------------------------hhhhccCCcCcce--ecCCccceEEEecccceEE
Confidence 1122333333333 6677777788888888888
Q ss_pred EEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 425 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
+||....+....+. ...+.++++|.++|. +|++|...|.|..||++..+. +......|...|++++|-|
T Consensus 235 ~yD~~s~~s~~~l~-y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~k~---------Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 235 IYDIRSQASTDRLT-YSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRSTKA---------PVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred Eeecccccccceee-ecCCcceeeecCCce-EEEeecCCceEEEEecccCCC---------CceEeeecccceeEEEeee
Confidence 88887665554443 456889999999987 999999999999999987542 6677888999999999987
Q ss_pred CC
Q 005254 505 ND 506 (706)
Q Consensus 505 ~~ 506 (706)
..
T Consensus 304 s~ 305 (673)
T KOG4378|consen 304 SP 305 (673)
T ss_pred cc
Confidence 64
No 165
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=5.7e-23 Score=176.13 Aligned_cols=221 Identities=23% Similarity=0.399 Sum_probs=174.3
Q ss_pred eCCCcCeEEEEEecCCC-eEEEEecCCCeEEEEEecCCCCC------CCcccccceeEEEeecCcceEEEEEcCC-CCEE
Q 005254 438 TGHMGAVGAVAFSKKLQ-NFLVSGSSDHTIKVWSFDGLSDD------AEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLV 509 (706)
Q Consensus 438 ~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l 509 (706)
..|.+.+..+..++-++ .+.++-+..|.|+||++...-.. ........+...+.+|...-..++|||- ...|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 35666777776666543 35666678899999998643111 1112344466778889999999999993 2357
Q ss_pred EEeeCCCcEEEEeCCCccEE---EEEeecCCcEEEEEEccCC-CEEEEecCCCcEEEEEcCCC---ceEEEEeecccCEE
Q 005254 510 CTGSQDRTACVWRLPDLVSV---VTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDG---SCLKTFEGHTSSVL 582 (706)
Q Consensus 510 ~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~ 582 (706)
++|.--+.|++|...++.-. ..+.+|...|..++|||.. ..|++|+.||+|+|||++++ .++.+ +.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 78887889999998886432 3456799999999999964 57899999999999999988 33444 77999999
Q ss_pred EEEEEeCCCEEEEEeCCCCEEEEECCC---CeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCchhHHHHH
Q 005254 583 RASFLTRGAQIVSCGADGLVKLWTVRT---GECIATYDKHEDKIWALAVGKKT-EMFATGGSDALVNLWHDSTAAEREEA 658 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~ 658 (706)
.+.|+.+-.+||+|+.||+++|||++. ++++..++.|..+|+++.|+|.. ..|+++|.|..|.+||+.-+...+++
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999888999999999999999974 67899999999999999999865 46778899999999999877765444
Q ss_pred H
Q 005254 659 F 659 (706)
Q Consensus 659 ~ 659 (706)
.
T Consensus 387 ~ 387 (440)
T KOG0302|consen 387 D 387 (440)
T ss_pred c
Confidence 3
No 166
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.90 E-value=1.4e-22 Score=165.12 Aligned_cols=306 Identities=16% Similarity=0.265 Sum_probs=211.4
Q ss_pred eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
.+...+++|.+.|+++.|-.+++ |.+|...|.|++|++++.+....++ .+...|+.+.-.|++. +.+-+.|+.+.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~ 80 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS---LDTQGRDPLLI 80 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc---hhhcCCCceEE
Confidence 35566779999999999998875 8889999999999999999888888 6788899999999744 89999999999
Q ss_pred EEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccc
Q 005254 172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250 (706)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (706)
+|++..+..+. .|.-.++++.|.+-. +...+... .+..++-+.....
T Consensus 81 lw~ia~s~~i~---i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~--------------------------- 128 (323)
T KOG0322|consen 81 LWTIAYSAFIS---IHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDET--------------------------- 128 (323)
T ss_pred EEEccCcceEE---Eeeeeccccccccce--eccCCCcchhheecCCcccchh---------------------------
Confidence 99987654432 344455666665432 22211111 0011110000000
Q ss_pred ccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEE
Q 005254 251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (706)
+..-++..
T Consensus 129 ---------------h~~D~g~~--------------------------------------------------------- 136 (323)
T KOG0322|consen 129 ---------------HKQDGGDT--------------------------------------------------------- 136 (323)
T ss_pred ---------------hhhccCcc---------------------------------------------------------
Confidence 00000000
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCC
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG 410 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 410 (706)
-++++-|- .-.+..+.+.|..+.+.-..
T Consensus 137 ---------------------------------------------tqv~i~dd-------~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 137 ---------------------------------------------TQVQIADD-------SERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred ---------------------------------------------ceeEccCc-------hhccccCceeeeeccccccc
Confidence 00000000 00112223333332233344
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEE----------EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCc
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCV----------GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ 480 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 480 (706)
..++++|.++|.+.+||+.++..+ .....|..+|.++.+.+.-. .=++|+.+..+..|.++......
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gsl-- 241 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSL-- 241 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCcc--
Confidence 456888899999999999987333 33446889999999987533 56788888899999987653221
Q ss_pred ccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcE
Q 005254 481 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 560 (706)
Q Consensus 481 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 560 (706)
.......-.+..+..+.+-||++.+|+++.|+.|++|..++..++..++-|...|.+++|+|+...+|.++.|++|
T Consensus 242 ----q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 242 ----QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred ----cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence 1222233344568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEc
Q 005254 561 KIWSI 565 (706)
Q Consensus 561 ~iwd~ 565 (706)
.+|++
T Consensus 318 SLWkL 322 (323)
T KOG0322|consen 318 SLWKL 322 (323)
T ss_pred Eeeec
Confidence 99986
No 167
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.3e-21 Score=171.72 Aligned_cols=239 Identities=21% Similarity=0.294 Sum_probs=187.8
Q ss_pred CCCcEEEEEecCCcEEEEeCCCcee---------------------eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 364 EEEQYLAVATNIEQVQVYDLSSMSC---------------------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 364 ~~~~~l~~~~~~~~i~~~d~~~~~~---------------------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
..++++|+|+-+..|.+||+.-... .....+|+..+..+. +....+.+|++|+.|.+
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls--~n~~~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS--WNRNFRNVLASGSADKT 267 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH--hccccceeEEecCCCce
Confidence 4578999999999999999862111 011235777777777 55666778999999999
Q ss_pred EEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEE
Q 005254 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 502 (706)
|.+||+.++++...+..|...|.++.|+|....+|++|+.|+++.+.|++... .....-...+.|..++|
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~----------~s~~~wk~~g~VEkv~w 337 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS----------NSGKEWKFDGEVEKVAW 337 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc----------ccCceEEeccceEEEEe
Confidence 99999999999999999999999999999998899999999999999998532 11111223466888999
Q ss_pred cCCC-CEEEEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCC-CEEEEecCCCcEEEEEcCCCce--EEEEeec
Q 005254 503 APND-SLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSC--LKTFEGH 577 (706)
Q Consensus 503 s~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~ 577 (706)
.|.. ..++++..||+++-+|++.. +++.+++.|.++|.++++++.- .+|++++.|+.+++|++..... +..-...
T Consensus 338 ~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~ 417 (463)
T KOG0270|consen 338 DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK 417 (463)
T ss_pred cCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc
Confidence 8854 56778889999999999876 8999999999999999999854 5789999999999999865433 2221112
Q ss_pred ccCEEEEEEEeCCC-EEEEEeCCCCEEEEECCCCeEEE
Q 005254 578 TSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGECIA 614 (706)
Q Consensus 578 ~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 614 (706)
.+...|.++.|+-. .|+.|+..+.++|||+.+...+.
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 23456667777654 57888888899999998876553
No 168
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.3e-22 Score=173.75 Aligned_cols=235 Identities=23% Similarity=0.320 Sum_probs=181.6
Q ss_pred CCCEEEEeeCC-eEEEEEccCCe---EEEe------------------ecCCCccEEEEEEccCC-CEEEEEeccCeEEE
Q 005254 30 DGSFIACACGE-SINIVDLSNAS---IKST------------------IEGGSDTITALALSPDD-KLLFSSGHSREIRV 86 (706)
Q Consensus 30 dg~~l~~~~~~-~i~i~d~~~~~---~~~~------------------l~~~~~~i~~l~~s~~~-~~l~s~~~d~~i~i 86 (706)
-|+++|.|+-+ .|.|||+.=.. +... -++|+..|.+|+|..+- ..||+|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 57899999988 89999984211 1111 23688899999998865 67899999999999
Q ss_pred EECCCCeEEEEeeccCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe
Q 005254 87 WDLSTLKCLRSWKGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 87 wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 165 (706)
||+.++++..++..|.+.|.+++|+|. ..+|++|+.|++|.+.|.+........-...+.|..++|.|... ..++++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se-~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE-NSFFVST 349 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc-eeEEEec
Confidence 999999999999999999999999994 67899999999999999985333322223678899999999744 5678889
Q ss_pred cCCeEEEEECCCC-eeEEEeecccceEEEEEEecCC-CEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCC
Q 005254 166 DDATVRVWDLLAK-KCVATLDKHFSRVTSMAITSDG-STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA 243 (706)
Q Consensus 166 ~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (706)
.||+|+-+|++.. +++.+++.|.++|.++++++.- .++++++.++.|++|++......................
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~---- 425 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFA---- 425 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecc----
Confidence 9999999999875 8999999999999999998754 478889999999999997655433322222111111111
Q ss_pred cccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
........++.||..+.+++||+.+.
T Consensus 426 ---------------~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 426 ---------------LDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ---------------cCCCcceEEEecCccceEEEeecccC
Confidence 11122347889999999999998765
No 169
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.88 E-value=2.2e-21 Score=163.48 Aligned_cols=177 Identities=18% Similarity=0.189 Sum_probs=133.1
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEE-EeccCeEEEEECCCCeEEEEeeccCC
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFS-SGHSREIRVWDLSTLKCLRSWKGHDG 103 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~ 103 (706)
..|||+|+++|+...-.+.|.|..+-+..+.+.. -+.|.-+.|+.|..+++. +..++.|.+|++...+-...+.....
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a 92 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA 92 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence 6799999999999999999999998887655443 467888999999877765 46799999999999998899998889
Q ss_pred CeEEEEECCCCCEEE-EecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCe---EEEEECCCCe
Q 005254 104 PAIGMACHPSGGLLA-TAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT---VRVWDLLAKK 179 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~---i~vwd~~~~~ 179 (706)
++.++.|||||+.+. +..-+-.|.+|.+.+.+.... +..+..+..++|+|||+. .+..+.-.. +.+..-..-.
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f--~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQF--CAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCce--eeeeecccHHHHHHHHhhHHHH
Confidence 999999999996554 555688999999988775543 334566799999999986 444443211 1111111223
Q ss_pred eEEEeecccceEEEEEEecCCCEEEE
Q 005254 180 CVATLDKHFSRVTSMAITSDGSTLIS 205 (706)
Q Consensus 180 ~~~~~~~~~~~v~~~~~~~~~~~l~~ 205 (706)
.++.+....-..+.+.|+|||..|++
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laV 195 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAV 195 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEE
Confidence 44445555567788999999876654
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=6e-20 Score=154.48 Aligned_cols=282 Identities=18% Similarity=0.290 Sum_probs=205.3
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEECCCC--------e----EEEEee-CCCCcEEEEEEcC-----CCCceEEEEEec
Q 005254 105 AIGMACHPSGGLLATAGADRKVLVWDVDGG--------F----CTHYFK-GHKGVVSSILFHP-----DTDKSLLFSGSD 166 (706)
Q Consensus 105 v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~--------~----~~~~~~-~~~~~v~~~~~~~-----~~~~~~l~~~~~ 166 (706)
...+.|||||.-|++-+.|..+.+|++... . ....++ .....|...+|-+ +-+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 346789999999999999999999998421 0 011111 1345577777742 224456899999
Q ss_pred CCeEEEEECCCCeeEEEeec--ccc---eEEEEEEecCCCEEEEEeCCCEEEEEeCC-CCcceeeecCcceeeeEEeeCC
Q 005254 167 DATVRVWDLLAKKCVATLDK--HFS---RVTSMAITSDGSTLISAGRDKVVNLWDLR-DYSCKLTVPTYEMVEAVCAIPP 240 (706)
Q Consensus 167 dg~i~vwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~dg~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~~ 240 (706)
+.-|++||.-+|+....++. |.. ...+++|+|||..|++|. ...|+++|+. .++.....+...
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~---------- 200 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT---------- 200 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh----------
Confidence 99999999999998877653 333 456899999999988775 6789999983 322111100000
Q ss_pred CCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeE
Q 005254 241 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLL 320 (706)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 320 (706)
T Consensus 201 -------------------------------------------------------------------------------- 200 (406)
T KOG2919|consen 201 -------------------------------------------------------------------------------- 200 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEE
Q 005254 321 CVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVL 400 (706)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~ 400 (706)
.--.+..+.+.
T Consensus 201 ---------------------------------------------------------------------~~k~gq~giis 211 (406)
T KOG2919|consen 201 ---------------------------------------------------------------------KGKFGQKGIIS 211 (406)
T ss_pred ---------------------------------------------------------------------cccccccceee
Confidence 00112334455
Q ss_pred EeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec-CCCeEEEEEecCCCCCCC
Q 005254 401 CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAE 479 (706)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~ 479 (706)
|++ ++|-....++.|+...++-|+.-..+.++..+.+|.+.|+.+.|.++|. .|++|+ .+-.|..||++.....
T Consensus 212 c~a--~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~~p-- 286 (406)
T KOG2919|consen 212 CFA--FSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSRDP-- 286 (406)
T ss_pred eee--ccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhccch--
Confidence 666 7777776689999999999999999999999999999999999999998 566665 4789999999875321
Q ss_pred cccccceeEEEeecCc---ceEEEEEcCCCCEEEEeeCCCcEEEEeCCC-ccEEEEEeecCCcEEEEEEccCCCEEEEec
Q 005254 480 QPMNLKAKAVVAAHGK---DINSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555 (706)
Q Consensus 480 ~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 555 (706)
...+..|.. .-.-....|++++|++|+.||.|++||+++ +..+..+..+...+..++++|--.++++++
T Consensus 287 -------v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 287 -------VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred -------hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 111222211 122356678999999999999999999998 677888888999999999999988888877
Q ss_pred CCC
Q 005254 556 GDK 558 (706)
Q Consensus 556 ~dg 558 (706)
...
T Consensus 360 Gqr 362 (406)
T KOG2919|consen 360 GQR 362 (406)
T ss_pred Cce
Confidence 653
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.2e-22 Score=197.10 Aligned_cols=246 Identities=22% Similarity=0.360 Sum_probs=200.7
Q ss_pred eEEEeeeeeecCCCE---EEEEeeCCCcEEEEeCCCc------eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEE
Q 005254 398 IVLCLDTCALSSGKI---LIVTGSKDNSVRLWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV 468 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 468 (706)
....++|+ +.+.. +++.|.+||.|.+||...- ..+.....|.+.|..+.|++...++|++|+.||.|.|
T Consensus 66 rF~kL~W~--~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 66 RFNKLAWG--SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cceeeeec--ccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 44556633 33333 5899999999999997652 3445667899999999999999999999999999999
Q ss_pred EEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC-CCEEEEeeCCCcEEEEeCCCccEEEEEeecCC--cEEEEEEc
Q 005254 469 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR--GIWSVEFS 545 (706)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~s 545 (706)
||+.......... .......|.+++|+.. ...|++++.+|.+.|||++..+++..+..+.. .+..++|+
T Consensus 144 WDlnn~~tP~~~~--------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~Wh 215 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG--------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWH 215 (1049)
T ss_pred eccCCcCCCCCCC--------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeC
Confidence 9998754322111 2234567999999874 56788999999999999999988888876655 47789999
Q ss_pred cCCC-EEEEecCCC---cEEEEEcCCC-ceEEEEeecccCEEEEEEEeCC-CEEEEEeCCCCEEEEECCCCeEEEEeccC
Q 005254 546 PVDQ-VVITASGDK---TIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKH 619 (706)
Q Consensus 546 ~~~~-~l~~~~~dg---~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 619 (706)
|+.. .|++++.|. .|.+||++.. ..++++++|...|.++.|++.+ ++|++++.|+.|.+|+..+++.+..+...
T Consensus 216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~ 295 (1049)
T KOG0307|consen 216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ 295 (1049)
T ss_pred CCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC
Confidence 9863 566666554 5999998754 5678889999999999999966 88999999999999999999999999988
Q ss_pred CCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCchh
Q 005254 620 EDKIWALAVGKKTE-MFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 620 ~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~ 653 (706)
.+.+..+.|.|... .++.++-||.|.||.+....
T Consensus 296 ~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 296 GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 89999999999877 67788999999999987765
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.6e-22 Score=196.00 Aligned_cols=283 Identities=23% Similarity=0.379 Sum_probs=218.3
Q ss_pred ceEEcCCCC-EEEEeeC-----------CeEEEE--EccCCe----EEEeecCCCccEEEEEEccCCCE----EEEEecc
Q 005254 24 PLVVSSDGS-FIACACG-----------ESINIV--DLSNAS----IKSTIEGGSDTITALALSPDDKL----LFSSGHS 81 (706)
Q Consensus 24 ~~~~s~dg~-~l~~~~~-----------~~i~i~--d~~~~~----~~~~l~~~~~~i~~l~~s~~~~~----l~s~~~d 81 (706)
.+|+||++. ++|+|.. ..+.|| |..+.+ .+..+. -...-+.|+|++.|.. ||.|.+|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 589999997 5555421 234444 444443 223333 2456789999998866 8888999
Q ss_pred CeEEEEECCCC------eEEEEeeccCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCeEEEEee--CCCCcEEEEEE
Q 005254 82 REIRVWDLSTL------KCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFK--GHKGVVSSILF 152 (706)
Q Consensus 82 ~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~ 152 (706)
|.|.+||...- ..+.+...|.+.|..+.|++... +||+|+.||.|.|||+.+.+.-.... .....|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998652 35667788999999999999765 99999999999999998755444332 25678999999
Q ss_pred cCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccc--eEEEEEEecCCC-EEEEEeCCC---EEEEEeCCCCcceeee
Q 005254 153 HPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS--RVTSMAITSDGS-TLISAGRDK---VVNLWDLRDYSCKLTV 226 (706)
Q Consensus 153 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~-~l~~~~~dg---~i~~w~~~~~~~~~~~ 226 (706)
+.. -..+|++++.+|.+.|||++..+.+-.+..+.+ .+..++|+|+.. .|++++.|. .|.+||++.
T Consensus 170 Nrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~------- 241 (1049)
T KOG0307|consen 170 NRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF------- 241 (1049)
T ss_pred chh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc-------
Confidence 876 345799999999999999999888877765544 477899999864 455555443 344555431
Q ss_pred cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccc
Q 005254 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (706)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (706)
T Consensus 242 -------------------------------------------------------------------------------- 241 (1049)
T KOG0307|consen 242 -------------------------------------------------------------------------------- 241 (1049)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
..
T Consensus 242 ------------------------------------------------------------------------------as 243 (1049)
T KOG0307|consen 242 ------------------------------------------------------------------------------AS 243 (1049)
T ss_pred ------------------------------------------------------------------------------cC
Confidence 11
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeE
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 466 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 466 (706)
...+.+.+|...+.+++ +.+.+..++++++.|+.|.+|+.++++.+..+......+..+.|.|....++++++-||.|
T Consensus 244 sP~k~~~~H~~Gilsls--Wc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI 321 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSLS--WCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKI 321 (1049)
T ss_pred Cchhhhcccccceeeec--cCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccce
Confidence 23346678999999999 6677877799999999999999999999999999899999999999988899999999999
Q ss_pred EEEEecCCC
Q 005254 467 KVWSFDGLS 475 (706)
Q Consensus 467 ~i~~~~~~~ 475 (706)
.||.+....
T Consensus 322 ~I~sl~~~~ 330 (1049)
T KOG0307|consen 322 SIYSLQGTD 330 (1049)
T ss_pred eeeeeecCC
Confidence 999998765
No 173
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.87 E-value=4.7e-21 Score=156.31 Aligned_cols=289 Identities=16% Similarity=0.238 Sum_probs=201.6
Q ss_pred ecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee-CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 349 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 349 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
+.++...+.++.|-. +.+|..+...|.+.+|++.+......+. .+...++.+. ..|+ .. +.+-+.|+.+.+|+
T Consensus 10 LRp~~~~v~s~~fqa--~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq--~~p~-d~-l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQA--NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQ--SIPN-DS-LDTQGRDPLLILWT 83 (323)
T ss_pred eccccchheehhhcc--chhhhcccccceEEEEEeecCccchhhhhhccceeecee--ecCC-cc-hhhcCCCceEEEEE
Confidence 336777888888853 4459999999999999999999888888 5667788876 4554 44 88999999999999
Q ss_pred CCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC-eEEEEEecCCCC----CCCcccc-cceeEEEeecCcceEEEE
Q 005254 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGLSD----DAEQPMN-LKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~i~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~i~~~~ 501 (706)
+.-+..+.. |.-.+.++-|.+. -+...+... ..-.++-+.... +...... ...........+.+.+..
T Consensus 84 ia~s~~i~i---~Si~~nslgFCrf---Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 84 IAYSAFISI---HSIVVNSLGFCRF---SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred ccCcceEEE---eeeeccccccccc---eeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 987654433 3334444444432 111111111 111111111100 0000000 000011112334456665
Q ss_pred EcC-CC--CEEEEeeCCCcEEEEeCCCccEEEE----------EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 502 VAP-ND--SLVCTGSQDRTACVWRLPDLVSVVT----------FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 502 ~s~-~~--~~l~~~~~dg~i~i~d~~~~~~~~~----------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
+.. ++ -+|++|.++|.+.+||+.++..+.. ...|..+|.++.+.+.-..=++|+.+..+..|++...
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 433 22 3667888999999999999844443 3458999999999987777788888888999988643
Q ss_pred --ce--EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 005254 569 --SC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALV 644 (706)
Q Consensus 569 --~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 644 (706)
.+ ..++.-..-.+..+.+-||++.+|+++.|+.|+||..++.+++..+..|.+.|++++|+|+...+++++.|+.|
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence 22 22333334568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEC
Q 005254 645 NLWHD 649 (706)
Q Consensus 645 ~vw~~ 649 (706)
.+|++
T Consensus 318 SLWkL 322 (323)
T KOG0322|consen 318 SLWKL 322 (323)
T ss_pred Eeeec
Confidence 99986
No 174
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.87 E-value=1.2e-19 Score=163.48 Aligned_cols=440 Identities=13% Similarity=0.161 Sum_probs=270.8
Q ss_pred CCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEE
Q 005254 31 GSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMAC 110 (706)
Q Consensus 31 g~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 110 (706)
..++++.+++.+.|.+ +.++..+.++.|.+.|.|-.|+|||.-|+++++||.|++|. .+|-+..++.....+|.|++|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 3456666667888887 67888889999999999999999999999999999999998 566666666667889999999
Q ss_pred CCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccce
Q 005254 111 HPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR 190 (706)
Q Consensus 111 s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 190 (706)
.|+..-++.+. .+.+.|=.+.-...+-..+.|.+-|.++.|++..+. +++|++|-..++||. .|..+..-..|..+
T Consensus 154 ~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~l--I~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 154 APNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNI--IASGGEDFRFKIWDA-QGANLFTSAAEEYA 229 (737)
T ss_pred CCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccc--eeecCCceeEEeecc-cCcccccCChhccc
Confidence 99988777654 467888888777777888999999999999997765 999999999999996 67777777889999
Q ss_pred EEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEe
Q 005254 191 VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV 270 (706)
Q Consensus 191 v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (706)
|++++|.|+ +.++.++ -+++++=..
T Consensus 230 ITSva~npd-~~~~v~S-~nt~R~~~p----------------------------------------------------- 254 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWS-YNTARFSSP----------------------------------------------------- 254 (737)
T ss_pred eeeeeeccc-cceeeee-eeeeeecCC-----------------------------------------------------
Confidence 999999999 5455544 344442111
Q ss_pred cCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEec
Q 005254 271 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV 350 (706)
Q Consensus 271 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (706)
..+.+..+.++++|..+.+++..|.+.+-...+..-.
T Consensus 255 --------------------------------~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~----------- 291 (737)
T KOG1524|consen 255 --------------------------------RVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLV----------- 291 (737)
T ss_pred --------------------------------CccceEEEEEcCCCceeeccccCceEEEeeeehhhhh-----------
Confidence 1234677788899999999999988876554432110
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
.+..=++......|.+-|+.++.+ ..+.... .+.... -....++++. ...+++|.-..
T Consensus 292 --------------~~n~~~t~~~r~~I~vrdV~~~v~-d~LE~p~-rv~k~s----L~Y~hLvvaT--s~qvyiys~kn 349 (737)
T KOG1524|consen 292 --------------SGNLKATSKSRKSITVRDVATGVQ-DILEFPQ-RVVKFS----LGYGHLVVAT--SLQVYIYSEKN 349 (737)
T ss_pred --------------hccceeEeeccceEEeehhhhhHH-HHhhCcc-ceeeee----eceeEEEEEe--ccEEEEEecCC
Confidence 112223333445566666655443 1222222 222221 1222322222 23566665444
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
......+.+....+.-+.-.. +.+++ ....++.+|..+......... +......+ +. ..+.+. ...|+
T Consensus 350 wntpiiidgre~tr~lieq~e--k~fli--~dgsSi~lytyegR~~~np~~-Pg~~~dlL--~~---rtlsLa--ndtLa 417 (737)
T KOG1524|consen 350 WNTPIIIDGREDTRNLIEQGE--KYFLI--LDGSSIWLYTYEGRLHLNPRY-PGSQIDLL--TW---RTLSLA--NDTLA 417 (737)
T ss_pred ccCcEEEeccccchhHhhhhh--hheEE--ecCcEEEEEEecCceecCCCC-CCcccccc--cc---eeeecc--cceEE
Confidence 322222222222221111111 11222 223355666554331100000 00000000 00 122222 22444
Q ss_pred Eee--CCCcEEEEeC-CCccEEEE--EeecCCcEEEEEEcc----CCCEEEEecCCCcEEEEEcCCCceEEEEeecccCE
Q 005254 511 TGS--QDRTACVWRL-PDLVSVVT--FRGHKRGIWSVEFSP----VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581 (706)
Q Consensus 511 ~~~--~dg~i~i~d~-~~~~~~~~--~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 581 (706)
.-. ....+.+||. .+++.... +-.|...|..++... +.+.++.-...+.+.|=.+++...-..+..-..-+
T Consensus 418 ird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGTmV 497 (737)
T KOG1524|consen 418 IRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGTMV 497 (737)
T ss_pred eecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhhhh
Confidence 432 3345788888 66665442 223677777676654 44566666677777776655432222222233467
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
..++|+.. .-+++|-.|+.+.||-..+
T Consensus 498 htLawndt-tNiLcglqDt~fsVWy~pn 524 (737)
T KOG1524|consen 498 HTLAWNDT-TNILCGLQDTCFSVWYYPN 524 (737)
T ss_pred hhhhhccc-cceeeeeccceEEEEEcCC
Confidence 77888754 4577788999999998754
No 175
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.87 E-value=4.9e-22 Score=188.23 Aligned_cols=283 Identities=20% Similarity=0.328 Sum_probs=224.1
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
+..|.||..+|.|..|...|.++++|++|..++||.++++.++....||.+.|+.++.+.++-++|+++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe-----ecccceEEEEEEecCCCEEEEEe
Q 005254 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-----DKHFSRVTSMAITSDGSTLISAG 207 (706)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~ 207 (706)
++.++..+.+|++.|++++|+| ..+.+.||++++||.+ ....... .....-+.++.|...+...++++
T Consensus 263 ~~~pvsvLrghtgavtaiafsP------~~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSP------RASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred CCchHHHHhccccceeeeccCc------cccCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccccccccc
Confidence 9999999999999999999999 4588899999999987 1111111 01224566666777777788888
Q ss_pred CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEE
Q 005254 208 RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 208 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
.|+.-..|.+........ ...+++.
T Consensus 336 ~d~ea~n~e~~~l~~~~~--------------------------------------~lif~t~----------------- 360 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRSN--------------------------------------LLIFVTR----------------- 360 (1113)
T ss_pred CCcccccchhhHhhhhcc--------------------------------------ceEEEec-----------------
Confidence 887766665432110000 0000000
Q ss_pred eeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCc
Q 005254 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367 (706)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 367 (706)
..+...
T Consensus 361 --------------------------------------------------------------------------ssd~~~ 366 (1113)
T KOG0644|consen 361 --------------------------------------------------------------------------SSDLSS 366 (1113)
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 001123
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
+.+++-.+-.+.+|++.++.....+.+|...+..++ +.|.+..+..+++.||...|||+-.+..++.+....+.+...
T Consensus 367 ~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd--~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~ 444 (1113)
T KOG0644|consen 367 IVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLD--VHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDG 444 (1113)
T ss_pred cceeeeeeeEeeeeecccchhhhhhcccccceeeee--ecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeecc
Confidence 445555567788999999999999999999999999 899999888899999999999999998888776667788888
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
+|+++|. .++....-|.++|.....+
T Consensus 445 kFSqdgt-s~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 445 KFSQDGT-SIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred ccCCCCc-eEecCCCCCceEEeccCCC
Confidence 9999988 5666666788888766544
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.7e-20 Score=156.48 Aligned_cols=275 Identities=18% Similarity=0.270 Sum_probs=198.1
Q ss_pred CcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecC-CCEEEEEeeCCCcEEEEeCCCceEEEEEe--CCC-
Q 005254 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVGVGT--GHM- 441 (706)
Q Consensus 366 ~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~- 441 (706)
+..++++...|.+++||..+++.+..+.++...+..+. +... ....+.+++.||+|++||++.......+. .+.
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vr--f~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVR--FISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecCCCCcccceE--EecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 36788999999999999999999999999998888887 4442 55569999999999999999876554433 333
Q ss_pred cCeEEEEEecCCCeEEEEec----CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCC
Q 005254 442 GAVGAVAFSKKLQNFLVSGS----SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDR 516 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~----~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg 516 (706)
.+..+++..-.++ ++++|. .+-.+.+||++..... .......|...|+++.|+| +.++|++|+.||
T Consensus 118 ~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~--------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 118 TPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQL--------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred CcceEeeccCcCC-eEEeccccccCceEEEEEEeccccch--------hhhhhhhccCcceeEEecCCCCCeEEeecccc
Confidence 3555666554444 666664 4678999999875321 3344567999999999999 558999999999
Q ss_pred cEEEEeCCCccE---EEEEeecCCcEEEEEEccCC-CEEEEecCCCcEEEEEcCCCceEEEEeecc------------cC
Q 005254 517 TACVWRLPDLVS---VVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGHT------------SS 580 (706)
Q Consensus 517 ~i~i~d~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~ 580 (706)
-|.+||++.... +...-.|...|..+.|..++ +.+.+-+......+|+++.+.+...+.... .-
T Consensus 189 LvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY 268 (376)
T KOG1188|consen 189 LVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDY 268 (376)
T ss_pred eEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhh
Confidence 999999976522 22223477889999999876 458888889999999999887655443221 01
Q ss_pred EEEEEEEe-CCCEEEEEeC-CCCEEEEECC---C---CeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 581 VLRASFLT-RGAQIVSCGA-DGLVKLWTVR---T---GECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 581 i~~~~~s~-~~~~l~~~~~-dg~i~iwd~~---~---~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
+.. ..+| ++...+.++. -+...++-+. + .+.+..+.+ |...|.++.|...+.++.|||+||.+.+|..+.
T Consensus 269 ~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 269 VIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred eee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 111 1122 3344444444 4555555443 2 334556665 777889999988899999999999999999744
Q ss_pred h
Q 005254 652 A 652 (706)
Q Consensus 652 ~ 652 (706)
.
T Consensus 348 a 348 (376)
T KOG1188|consen 348 A 348 (376)
T ss_pred c
Confidence 3
No 177
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=163.91 Aligned_cols=127 Identities=27% Similarity=0.454 Sum_probs=108.9
Q ss_pred eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
.+...+.||.+.|+++.|+.+|.+|++|++|-.+.|||.-..++++.+. +|...|.++.|.|.....++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3455789999999999999999999999999999999999888887764 799999999999998888999999999999
Q ss_pred EEECCCC----------eeEEEeecccceEEEEEEecCC-CEEEEEeCCCEEEEEeCCC
Q 005254 172 VWDLLAK----------KCVATLDKHFSRVTSMAITSDG-STLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 172 vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~~ 219 (706)
++|+... +....+..|...|..++-.|++ ..+.++++||+++-+|++.
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 9999742 2334456688888888888887 6778888888888888764
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.7e-19 Score=154.63 Aligned_cols=302 Identities=18% Similarity=0.256 Sum_probs=216.3
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC------CeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCe
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG------GFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 169 (706)
.+.+|.+.|.++.||.++++||+|+.|..+++|+++. .+++.... .|...|.|++|...... +++|..+++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~--~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRF--LYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCee--EecCCCcce
Confidence 3567999999999999999999999999999999853 34554433 36689999999875444 999999999
Q ss_pred EEEEECCCCeeEEEeec--ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccc
Q 005254 170 VRVWDLLAKKCVATLDK--HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSF 247 (706)
Q Consensus 170 i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (706)
|...|+++.+.+..+.. ..+.|..|..+|..+.+++.+.++.|.+||.+.......+ +
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~--------~------------ 188 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL--------V------------ 188 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce--------e------------
Confidence 99999999998877642 3358999999999999999999999999998754311000 0
Q ss_pred cccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCc
Q 005254 248 LSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQ 327 (706)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 327 (706)
T Consensus 189 -------------------------------------------------------------------------------- 188 (609)
T KOG4227|consen 189 -------------------------------------------------------------------------------- 188 (609)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeC-C---cc-eEEEe
Q 005254 328 LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-H---SE-IVLCL 402 (706)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~---~~-~i~~~ 402 (706)
.+.........+.|.|....++++....+.+.+||.........-.+ . .. ...-+
T Consensus 189 --------------------~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M 248 (609)
T KOG4227|consen 189 --------------------LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWM 248 (609)
T ss_pred --------------------eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhh
Confidence 00011223455667778888999999999999999875543211111 1 11 10012
Q ss_pred eeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC-------CcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCC
Q 005254 403 DTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-------MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 475 (706)
Q Consensus 403 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 475 (706)
...++|.+.. +++--....-.+||+.+.++......| ...+.+++|..+. -+++|+.+-.|++|.+....
T Consensus 249 ~~~~~~~G~Q-~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 249 GSLWSPSGNQ-FMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred heeeCCCCCe-ehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCCCc
Confidence 2227888887 555444555667787764433322222 2356678888774 49999999999999997643
Q ss_pred CCCC-------------cccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 005254 476 DDAE-------------QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (706)
Q Consensus 476 ~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 523 (706)
...- ...-......+.+|..-+..+.|+|-..+|++.+..+.++||.-
T Consensus 326 ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 326 DSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 2111 11223456678999999999999999999999999999999964
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.3e-18 Score=138.10 Aligned_cols=163 Identities=20% Similarity=0.298 Sum_probs=130.8
Q ss_pred ccEEEEEEccCCCEEEEEeccCeEEEEECCC----------CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 61 DTITALALSPDDKLLFSSGHSREIRVWDLST----------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 61 ~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
..|.+-+++|.+++|++|..+|.|.+..+++ ..++...++|.++|..++|. ..+|++++ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3456668999999999999999999998863 23455568899999999999 45677776 59999999
Q ss_pred CCCCeE------EEEe--eC-----CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEe
Q 005254 131 VDGGFC------THYF--KG-----HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT 197 (706)
Q Consensus 131 ~~~~~~------~~~~--~~-----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 197 (706)
+..... +... .- .-..|+++...|..+. ++.++.|+.++-||+++|+..+.+++|.+.+.++.--
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS--i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS--ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc--EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence 864321 1111 11 2246899999987766 7777799999999999999999999999999999886
Q ss_pred cCCCEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 198 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 198 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
.....+++|++||++++||.++++.+..+..
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~ 196 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEP 196 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEecc
Confidence 6666799999999999999999887776654
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=3.7e-19 Score=154.68 Aligned_cols=257 Identities=21% Similarity=0.282 Sum_probs=191.3
Q ss_pred cceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc---------eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeE
Q 005254 396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 466 (706)
Q Consensus 396 ~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 466 (706)
..++..++ +..+....+++|+.|..|++|-+..+ +.+..+..|...|+.+.|+|+|. +|++|+.+|.+
T Consensus 13 ~~pv~s~d--fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVD--FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEV 89 (434)
T ss_pred CCceEEEE--eccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceE
Confidence 34566666 65666545999999999999976542 23345678999999999999998 99999999999
Q ss_pred EEEEecCCCC------CCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEE
Q 005254 467 KVWSFDGLSD------DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW 540 (706)
Q Consensus 467 ~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 540 (706)
.+|....... ....+..+.......+|...|..++|+|++.++++++.|..+++||+..|.....+..|..-+.
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 9998773211 1112334556677888999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEe-------------------eccc----CEEEEEEEeCCCEEEE--
Q 005254 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-------------------GHTS----SVLRASFLTRGAQIVS-- 595 (706)
Q Consensus 541 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~----~i~~~~~s~~~~~l~~-- 595 (706)
.++|.|-++++++-+.|...+++.+...+.+.... .|.. -...++|+|||.+|++
T Consensus 170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 99999999999988888877776664332221111 0110 1122344444433322
Q ss_pred -------------------------------------------------------------------EeCCCCEEEEECC
Q 005254 596 -------------------------------------------------------------------CGADGLVKLWTVR 608 (706)
Q Consensus 596 -------------------------------------------------------------------~~~dg~i~iwd~~ 608 (706)
......|++||.+
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq 329 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQ 329 (434)
T ss_pred ceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccc
Confidence 1223456777776
Q ss_pred CCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 609 TGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 609 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
+-+++.... -|-..|+.++|++||..|+..+.||-..+-.+++.+.-
T Consensus 330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 666666554 58889999999999999999999999888877766554
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=9.4e-19 Score=141.18 Aligned_cols=237 Identities=16% Similarity=0.247 Sum_probs=177.5
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCC----------ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCC
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSES----------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 475 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 475 (706)
.+|.++. +++|..+|.|.++.+++ ...+...++|.+++..++|..+ +|++++. |.|+-|..+...
T Consensus 18 ~sp~~~~-l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 18 ISPSKQY-LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred hCCcceE-EEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeeccC-ceEEEeeehhhh
Confidence 5566666 99999999999998653 2234445899999999999955 6777665 999999887543
Q ss_pred CCCCccccc--ce-eEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEE
Q 005254 476 DDAEQPMNL--KA-KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 476 ~~~~~~~~~--~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 552 (706)
........+ +. ...-...-..|+++-+.|..+-++.++.|+.++-||+++|+....+++|.+-|.++.--.....++
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL 172 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee
Confidence 211111000 00 011112234689999999887777777999999999999999999999999999999866666799
Q ss_pred EecCCCcEEEEEcCCCceEEEEeecc----------cCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCc
Q 005254 553 TASGDKTIKIWSISDGSCLKTFEGHT----------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 622 (706)
Q Consensus 553 ~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 622 (706)
+|++||++|+||.++++++..+.... ..|-+++- +..+|++|+. -.+.+|++++.++...+.- ...
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpi-pa~ 248 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPI-PAR 248 (325)
T ss_pred ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEec-ccc
Confidence 99999999999999999988776422 23444444 5558888764 5799999999998887753 557
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 623 IWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 623 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+..+.| +...++++++.+.+.-|.+....
T Consensus 249 v~~v~F--~~d~vl~~G~g~~v~~~~l~Gvl 277 (325)
T KOG0649|consen 249 VHLVDF--VDDCVLIGGEGNHVQSYTLNGVL 277 (325)
T ss_pred eeEeee--ecceEEEeccccceeeeeeccEE
Confidence 788888 45568889988899999886543
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.2e-20 Score=169.44 Aligned_cols=261 Identities=19% Similarity=0.233 Sum_probs=197.3
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC--------ceEEEEEeCCCcCeEEEEEecCCCeEEEEecC
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS 462 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 462 (706)
.+..|...+..+. +.+-... +++++.||.+.+|+++. -+++..+.+|.++|.|+++.+++. .+++|+.
T Consensus 289 tl~s~~d~ir~l~--~~~sep~-lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg~ 364 (577)
T KOG0642|consen 289 TLRSHDDCIRALA--FHPSEPV-LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGGI 364 (577)
T ss_pred eeecchhhhhhhh--cCCCCCe-EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-EEEeecc
Confidence 5566777777775 5555555 99999999999999932 256778999999999999999988 8999999
Q ss_pred CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecC--CcEE
Q 005254 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK--RGIW 540 (706)
Q Consensus 463 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~v~ 540 (706)
||+|+.|++..................+.+|...+..+++|+....|++++.||+++.|+.....+ ..+.... +-.+
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999999998844332222223335567889999999999999999999999999999999877666 3333322 2234
Q ss_pred EEEEccCC-CEEEEecCCCcEEEEEcCCCceEEEEeec-------ccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE
Q 005254 541 SVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGH-------TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC 612 (706)
Q Consensus 541 ~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 612 (706)
++.+-... ...++...-+.-.++++.....+..+... ...+..+.+.|.+.+.+++.+|+.|+++|..++++
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 45554322 22223233333334444444444444321 23567788899999999999999999999999999
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHH
Q 005254 613 IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 613 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
+.....|...++++++.|+|.+|++++.||.+++|++.......
T Consensus 524 l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 524 LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred chheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 99999999999999999999999999999999999997655443
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=2.7e-19 Score=148.13 Aligned_cols=268 Identities=25% Similarity=0.349 Sum_probs=198.7
Q ss_pred CcEEEEeCCCcee---eEeeeCCcceEEEeeeeeecCCCEEEEEeeCC-------CcEEEEeCCCc---------eEEEE
Q 005254 376 EQVQVYDLSSMSC---SYVLAGHSEIVLCLDTCALSSGKILIVTGSKD-------NSVRLWDSESR---------CCVGV 436 (706)
Q Consensus 376 ~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~---------~~~~~ 436 (706)
++|.+.++..... ...+..+.+.|..++ .+|.+..+|+++..+ -...+|.+... +++..
T Consensus 40 NqVhll~~d~e~s~l~skvf~h~agEvw~la--s~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 40 NQVHLLRLDSEGSELLSKVFFHHAGEVWDLA--SSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred ceeEEEEecCccchhhhhhhhcCCcceehhh--cCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 5566655544322 235666788899998 888888878887653 24678987543 22333
Q ss_pred Ee-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC--CCCEEEEee
Q 005254 437 GT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP--NDSLVCTGS 513 (706)
Q Consensus 437 ~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~ 513 (706)
+. .+-+.+.++.|.|++. .+++-. |..|.+|++.......... .......+....++-+|+| ||+.+++.+
T Consensus 118 Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev----~ss~s~e~~~~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEV----LSSESAEMRHSFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred CCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheee----cccccccccceecccccCCCCccceEEEeC
Confidence 33 4567899999999877 455444 8899999998775421111 1111122455678889998 888888764
Q ss_pred CCCcEEEEeCCCccEEEEEe-ecCCcEEEEEEccCCC-EEEEecCCCcEEEEEcCCC-ceEEEEeecccCEEEEEEEeC-
Q 005254 514 QDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQ-VVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTR- 589 (706)
Q Consensus 514 ~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~- 589 (706)
|+++..||+++.+....+. .|...|..+.|+|+.+ +|++++.||.|++||.+.. .++.++.+|...+.++.|.|.
T Consensus 192 -d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 192 -DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred -CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc
Confidence 7899999999988777665 4889999999999865 5889999999999999765 568999999999999999984
Q ss_pred CCEEEEEeCCCCEEEEECCC-----------------------------CeEEEEeccCCCcEEEEEEcCCCCE-EEEEe
Q 005254 590 GAQIVSCGADGLVKLWTVRT-----------------------------GECIATYDKHEDKIWALAVGKKTEM-FATGG 639 (706)
Q Consensus 590 ~~~l~~~~~dg~i~iwd~~~-----------------------------~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~ 639 (706)
.+++++|+.|..|.+|...+ ...+.++..|.+.|.+++||.-+.+ +++.+
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 46789999999999997631 0134466789999999999987775 56789
Q ss_pred CCCcEEEEECCch
Q 005254 640 SDALVNLWHDSTA 652 (706)
Q Consensus 640 ~dg~i~vw~~~~~ 652 (706)
.||.+.|=++...
T Consensus 351 YDGRviIs~V~r~ 363 (370)
T KOG1007|consen 351 YDGRVIISSVPRF 363 (370)
T ss_pred cCceEEeecCChh
Confidence 9999998777543
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=5e-21 Score=181.47 Aligned_cols=292 Identities=16% Similarity=0.254 Sum_probs=212.7
Q ss_pred eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
+.+..+.+|...|.|+.|...|.++++|+.|..++||..+++.++..+.||.+.|+.++.+.+.- ++++++.|..|++
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~--~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNT--MIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhh--hhhhcccCceEEE
Confidence 34455678999999999999999999999999999999999999999999999999999987544 4999999999999
Q ss_pred EECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccccc
Q 005254 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 252 (706)
Q Consensus 173 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (706)
|.+..+.++..+.+|.+.|++++|+|-. +.+.||++++||.+ .......+.+... ++
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~-------~~----------- 315 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKF-------TE----------- 315 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCc-------cc-----------
Confidence 9999999999999999999999999964 67789999999987 1111111100000 00
Q ss_pred chhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEE
Q 005254 253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 332 (706)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (706)
..-+.++.+.
T Consensus 316 ---------------------------------------------------~~~~~s~~~~------------------- 325 (1113)
T KOG0644|consen 316 ---------------------------------------------------KDLVDSILFE------------------- 325 (1113)
T ss_pred ---------------------------------------------------ccceeeeecc-------------------
Confidence 0000011111
Q ss_pred eeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCE
Q 005254 333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412 (706)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 412 (706)
.+...+++++.++.-..|...... .+...+.-+. ...+-..
T Consensus 326 -------------------------------~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t--~ssd~~~ 366 (1113)
T KOG0644|consen 326 -------------------------------NNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVT--RSSDLSS 366 (1113)
T ss_pred -------------------------------ccccccccccCCcccccchhhHhh------hhccceEEEe--ccccccc
Confidence 133344455555544444433211 1111111111 2222223
Q ss_pred EEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee
Q 005254 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 492 (706)
+.+++-.+-.+.+|++.++.....+.+|...+..+.++|-+..+..+++.||...|||+-.+.. ......+
T Consensus 367 ~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p---------ik~y~~g 437 (1113)
T KOG0644|consen 367 IVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP---------IKHYFIG 437 (1113)
T ss_pred cceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc---------ceeeecc
Confidence 4667777888999999999999999999999999999999888889999999999999987642 1122233
Q ss_pred cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE
Q 005254 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 528 (706)
...+..-+||+||..++....-|.++|.....++.
T Consensus 438 -h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 438 -HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred -cceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 45567789999999999998899999988655543
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=1.1e-18 Score=167.63 Aligned_cols=278 Identities=18% Similarity=0.229 Sum_probs=207.8
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE--EE----EEeCCCcCeEEEEE
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC--VG----VGTGHMGAVGAVAF 449 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~----~~~~~~~~v~~~~~ 449 (706)
+.+.+|++...............+.++. +.|....+++.|..+|.|.+||+..+.. .. ....|..++..+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~--f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLK--FCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEE--eccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 3789999998855555555667888888 8888888899999999999999987765 22 23468889999999
Q ss_pred ecCCC-eEEEEecCCCeEEEEEecCCCCCCCccccccee--EEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCC
Q 005254 450 SKKLQ-NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK--AVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 450 ~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~ 525 (706)
..+-. .-+++++.||.|..|+++......+........ .........+++++|.+ +-..+++|+++|.|.--+-..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 76433 247888889999999887654322211111111 11112345688999988 456788999999988733222
Q ss_pred ---c-----cEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC-CCceEEEEeecccCEEEEEEEeCCC-EEEE
Q 005254 526 ---L-----VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS-DGSCLKTFEGHTSSVLRASFLTRGA-QIVS 595 (706)
Q Consensus 526 ---~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~ 595 (706)
. +....+..|.++|.++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||-.. .+++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 2 2233556689999999999987766655569999999987 6777888887888899999999754 5677
Q ss_pred EeCCCCEEEEECCCC--eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 596 CGADGLVKLWTVRTG--ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 596 ~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
+..||.|.+||+... +++.....+....+.+.|+++|+.|++|...|.+.+|++......
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~ 521 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLAV 521 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchhhc
Confidence 888999999999643 456666666667778889999999999999999999999765543
No 186
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.6e-18 Score=162.03 Aligned_cols=455 Identities=13% Similarity=0.115 Sum_probs=289.3
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCC------------CEEEEecCCCcEE
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSG------------GLLATAGADRKVL 127 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~~~~d~~i~ 127 (706)
...-.++.|+|.| ++|-|+ ...|.+-|..+.+.+..+..|...|+.+.|.|-. -+||++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3345788999998 455555 4489999999999999999999999999998721 2577888889999
Q ss_pred EEECCCCeEEEEeeCCCCcEEEEEEcCCC--CceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEec-CCCEEE
Q 005254 128 VWDVDGGFCTHYFKGHKGVVSSILFHPDT--DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS-DGSTLI 204 (706)
Q Consensus 128 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 204 (706)
+||...+..+..+..|..++..++|-+.. .+.+|+.-....++.+|+..+|+.+...........|+.+.| |.+.+.
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 99999999999999999999999997642 334677777788999999999999887766666777888888 556777
Q ss_pred EEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 205 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
..+..|.+.+-+.-..... ..+...+....+.+....
T Consensus 173 ~l~s~g~vl~~~~l~~sep-----~~pgk~~qI~sd~Sdl~~-------------------------------------- 209 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEP-----DVPGKEFQITSDHSDLAH-------------------------------------- 209 (1062)
T ss_pred EEccCceEEEEeccCCCCC-----CCCceeEEEecCccchhh--------------------------------------
Confidence 7777887776654221100 000000000000000000
Q ss_pred eEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC
Q 005254 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 364 (706)
....+++. +... ....... +..-...++|+|.
T Consensus 210 --------------------------------lere~at~-------ns~t------s~~~sa~---fity~a~faf~p~ 241 (1062)
T KOG1912|consen 210 --------------------------------LERETATG-------NSTT------STPASAY---FITYCAQFAFSPH 241 (1062)
T ss_pred --------------------------------hhhhhhcc-------cccc------CCCcchh---HHHHHHhhhcChh
Confidence 00000000 0000 0000000 0001223455665
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc-------------
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR------------- 431 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------------- 431 (706)
-.+.+..... ..+.++|++-..++....-..+.+.-+++...+.... +++...||.+.+|-.+..
T Consensus 242 ~rn~lfi~~p-rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~-LfclH~nG~ltirvrk~~~~~f~~~~~~l~~ 319 (1062)
T KOG1912|consen 242 WRNILFITFP-RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA-LFCLHSNGRLTIRVRKEEPTEFKKPNASLSM 319 (1062)
T ss_pred hhceEEEEec-cceEEEcchhhceeEEEEeccCCcceeEeccCCCcce-EEEEecCCeEEEEEeeccCccccccchhhcc
Confidence 5555554444 7899999998888887777777666666545555555 888999999999965431
Q ss_pred ---eEEEEEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC---------cccc------------cce
Q 005254 432 ---CCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE---------QPMN------------LKA 486 (706)
Q Consensus 432 ---~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~---------~~~~------------~~~ 486 (706)
+....+. .....+...+..|..+..++.--.+|.+.+|.+.++..... .+.. ...
T Consensus 320 dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~ 399 (1062)
T KOG1912|consen 320 DLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLIS 399 (1062)
T ss_pred ccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccc
Confidence 1111111 11112222333344343455556678888898875421110 0000 000
Q ss_pred eEEEeecCcceEEEEEcC-----------CC-------CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCC
Q 005254 487 KAVVAAHGKDINSLAVAP-----------ND-------SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548 (706)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~-----------~~-------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 548 (706)
.....+|....++....| .+ .++|.|...|+|.++|+.++.....+..|...|.++.|-...
T Consensus 400 LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s 479 (1062)
T KOG1912|consen 400 LSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS 479 (1062)
T ss_pred hhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccce
Confidence 011123444444443332 12 378899999999999999999999999999999999998765
Q ss_pred CEEEEec---------CCCcEEEEEcCCCceE--EEEee-cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 549 QVVITAS---------GDKTIKIWSISDGSCL--KTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 549 ~~l~~~~---------~dg~i~iwd~~~~~~~--~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
.++-.+. .-+.+.+-|+++|... +.+++ ...+|+.+..|..|+||+..-.|.-+.+||+++
T Consensus 480 slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 480 SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred eEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 5443222 2245778888888443 32232 456899999999999999999999999999964
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.3e-19 Score=152.37 Aligned_cols=195 Identities=19% Similarity=0.299 Sum_probs=155.6
Q ss_pred CEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEcc--CCCEEEEEeccCeEEEEECCCCeEEEEe--eccC-CCe
Q 005254 32 SFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSP--DDKLLFSSGHSREIRVWDLSTLKCLRSW--KGHD-GPA 105 (706)
Q Consensus 32 ~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~-~~v 105 (706)
..+|++..+ .|++||..+++.+..+++++..++.++|.. ....+.+|+.||+|++||+.+......+ ..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 456666554 999999999999999999999999999987 4577889999999999999887665544 4444 567
Q ss_pred EEEEECCCCCEEEEec----CCCcEEEEECCCCeE-EEE-eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe
Q 005254 106 IGMACHPSGGLLATAG----ADRKVLVWDVDGGFC-THY-FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (706)
Q Consensus 106 ~~~~~s~~~~~l~~~~----~d~~i~vw~~~~~~~-~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 179 (706)
.+++..-.++.+++|. .+-.|.+||++..+. +.. ...|...|++++|+|. +.++|++|+.||.|.++|+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CCCeEEeecccceEEeeecCCCc
Confidence 7788777888888885 467899999987765 433 4579999999999997 56789999999999999986543
Q ss_pred e---EEEeecccceEEEEEEecCC-CEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 180 C---VATLDKHFSRVTSMAITSDG-STLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 180 ~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
. +...-.|...|.++.|..++ +.+.+.+......+|+++.+.....++
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 1 22223467789999999876 468888999999999999887554443
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=2.8e-19 Score=154.74 Aligned_cols=209 Identities=18% Similarity=0.312 Sum_probs=164.4
Q ss_pred EeecCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCCC-------eEEEEeeccCCCeEEEEECCCC-CEEEEecCCC
Q 005254 54 STIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTL-------KCLRSWKGHDGPAIGMACHPSG-GLLATAGADR 124 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~ 124 (706)
-.+.||.++|..++|+| +...||+|++|-+|.||++..+ +++..+.+|...|..++|+|.. +.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 35678999999999999 5578999999999999999654 4677889999999999999964 5788999999
Q ss_pred cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccc-eEEEEEEecCCCEE
Q 005254 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS-RVTSMAITSDGSTL 203 (706)
Q Consensus 125 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l 203 (706)
+|.+||+.+|+.+..+. |...|.+++|+.+|.. +++.+.|..|+|||.++++.+..-.+|.+ .-....|..+|..+
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~--l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSL--LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCce--eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 99999999999988888 9999999999999887 99999999999999999999988878876 34556688888844
Q ss_pred EEEe---CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEE
Q 005254 204 ISAG---RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 280 (706)
Q Consensus 204 ~~~~---~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 280 (706)
.+|- .+..+-+||....+.-..+..-.....+. ......+.+...++|-.|+.||.|.
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl-------------------~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVL-------------------LPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccCCceE-------------------EeeecCCCCEEEEEecCCcceEEEE
Confidence 4442 46789999987655332221111111111 1112233456788999999999999
Q ss_pred CCCC
Q 005254 281 ADSA 284 (706)
Q Consensus 281 ~~~~ 284 (706)
+...
T Consensus 293 it~d 296 (472)
T KOG0303|consen 293 ITNE 296 (472)
T ss_pred ecCC
Confidence 8766
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.83 E-value=1.6e-18 Score=166.45 Aligned_cols=279 Identities=17% Similarity=0.189 Sum_probs=203.3
Q ss_pred CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee--EE----EeecccceEEEEEEe
Q 005254 124 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC--VA----TLDKHFSRVTSMAIT 197 (706)
Q Consensus 124 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~----~~~~~~~~v~~~~~~ 197 (706)
+.+.+|++.........-.....|+++.|+|. +..+++.|..+|.|.+||++.+.. .. ....|..++..+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999876333333336789999999997 456799999999999999987654 22 224588899999997
Q ss_pred cCCC--EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCe
Q 005254 198 SDGS--TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 275 (706)
Q Consensus 198 ~~~~--~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (706)
.+.. -+++++.||.|..|+++...........+...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~------------------------------------------ 338 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK------------------------------------------ 338 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhccccccc------------------------------------------
Confidence 6544 48888899999999776433211110000000
Q ss_pred EEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCce
Q 005254 276 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 355 (706)
Q Consensus 276 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (706)
...........
T Consensus 339 ---------------------------------------------------------------------~~~~~~~~~~~ 349 (555)
T KOG1587|consen 339 ---------------------------------------------------------------------HKGQQSSKAVG 349 (555)
T ss_pred ---------------------------------------------------------------------ccccccccccc
Confidence 00001112345
Q ss_pred eeEeeEeCCCCcEEEEEecCCcEEEEeCCCce--------eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 356 v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
+..+.|.+.+...+++|+..|.|..-+-.... ....+..|.+++.++. ++|-...++.+++ |.++++|.
T Consensus 350 ~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~--~nPF~~k~fls~g-DW~vriWs 426 (555)
T KOG1587|consen 350 ATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVS--RNPFYPKNFLSVG-DWTVRIWS 426 (555)
T ss_pred eeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeee--cCCCccceeeeec-cceeEecc
Confidence 67788888888999999999998884433222 2335567888999998 8888888666666 99999999
Q ss_pred CC-CceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 428 SE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 428 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
.. ...++..+..+...+++++|||....+++++..||.+.+||+......+. ..........+.+.++++|
T Consensus 427 ~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv--------~s~~~~~~~l~~~~~s~~g 498 (555)
T KOG1587|consen 427 EDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV--------LSQKVCSPALTRVRWSPNG 498 (555)
T ss_pred ccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc--------ccccccccccceeecCCCC
Confidence 88 66777777778888999999999988999999999999999987643332 1122225567788899999
Q ss_pred CEEEEeeCCCcEEEEeCCC
Q 005254 507 SLVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 507 ~~l~~~~~dg~i~i~d~~~ 525 (706)
+.|++|+..|.+.+|++..
T Consensus 499 ~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 499 KLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cEEEEecCCCcEEEEEcCc
Confidence 9999999999999999864
No 190
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.83 E-value=2.1e-16 Score=154.93 Aligned_cols=187 Identities=24% Similarity=0.366 Sum_probs=152.8
Q ss_pred CCCCEEEEe-eCCeEEEEEccCCeEEEeecCCCcc----EEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCC
Q 005254 29 SDGSFIACA-CGESINIVDLSNASIKSTIEGGSDT----ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG 103 (706)
Q Consensus 29 ~dg~~l~~~-~~~~i~i~d~~~~~~~~~l~~~~~~----i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 103 (706)
-+.+.++.+ +.+.+.+||...+.....+...... ..-+.++++.-++++|+.-+.|.+|+...-..-..+.+|.+
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG 176 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG 176 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence 344455544 4558999999888777666544332 22344677788999999999999999974443346899999
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE-EeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEE
Q 005254 104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH-YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 182 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 182 (706)
.|..+.++.||.++++.++|+++++|++++.+... ..-+|+.+|+.++|.|+ . ++++++|.+.++|+. .++.+.
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~--i~t~gedctcrvW~~-~~~~l~ 251 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--R--IITVGEDCTCRVWGV-NGTQLE 251 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--e--eEEeccceEEEEEec-ccceeh
Confidence 99999999999999999999999999999988766 56689999999999997 3 999999999999976 556666
Q ss_pred Eeecccc-eEEEEEEecCCCEEEEEeCCCEEEEEeCCCC
Q 005254 183 TLDKHFS-RVTSMAITSDGSTLISAGRDKVVNLWDLRDY 220 (706)
Q Consensus 183 ~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 220 (706)
.+.+|.+ .+..++..++...+++++.|+.+++|++...
T Consensus 252 ~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 252 VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 7777764 7899999999999999999999999998654
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=2.2e-17 Score=157.02 Aligned_cols=270 Identities=12% Similarity=0.192 Sum_probs=178.8
Q ss_pred EEEEecCCcEEEEeCCC-ce--eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC-CceE--EEEEeCCCc
Q 005254 369 LAVATNIEQVQVYDLSS-MS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-SRCC--VGVGTGHMG 442 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~-~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~--~~~~~~~~~ 442 (706)
+++...++.|.+|++.+ ++ ....+.. .+....+. ++|+++.+.+++..++.|.+|++. +++. +.... ..+
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~--~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~ 80 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMV--ISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG 80 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEE--ECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence 34446679999999964 32 3334432 23444555 788888855666678899999986 3332 22222 334
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CCCcEEEE
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVW 521 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~ 521 (706)
....++++|+++.++++...++.|.+|+++....... ..... .+.....+++++|+++++++++ .++.|.+|
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~------~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA------PIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC------ceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEE
Confidence 5678999999985555555689999999964321110 11111 1223467788999999886555 56899999
Q ss_pred eCCCccEEE-------EEeecCCcEEEEEEccCCCEEEEecC-CCcEEEEEcCC--Cc--eEEEEeecc------cCEEE
Q 005254 522 RLPDLVSVV-------TFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISD--GS--CLKTFEGHT------SSVLR 583 (706)
Q Consensus 522 d~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~~~------~~i~~ 583 (706)
|+.+...+. ... .......++|+|++++++++.. +++|.+|++.. ++ .+..+..+. .....
T Consensus 154 d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (330)
T PRK11028 154 TLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD 232 (330)
T ss_pred EECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence 997633221 111 2344678999999999988876 89999999973 32 333333211 12335
Q ss_pred EEEEeCCCEEEEEeC-CCCEEEEECCCCe----EEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEECCc
Q 005254 584 ASFLTRGAQIVSCGA-DGLVKLWTVRTGE----CIATYDKHEDKIWALAVGKKTEMFATGGS-DALVNLWHDST 651 (706)
Q Consensus 584 ~~~s~~~~~l~~~~~-dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~ 651 (706)
+.++|++++|+++.. ++.|.+|++.... .+..+.. ......+.++|||++|+++.. +++|.+|+++.
T Consensus 233 i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 233 IHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 889999999998864 6899999986433 2333222 124457899999999998775 89999998853
No 192
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3e-18 Score=148.25 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=132.6
Q ss_pred EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECC------CCeEEEEee-ccCCCeEEEEECCCCCEEEEecCCCcE
Q 005254 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS------TLKCLRSWK-GHDGPAIGMACHPSGGLLATAGADRKV 126 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~------~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i 126 (706)
+.+.+|.+.|.++.||.++++||+|+.|..+++|+++ +.+++.... .|...|.|++|...+..|.+|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 4567899999999999999999999999999999985 345555443 366899999999999999999999999
Q ss_pred EEEECCCCeEEEEeeC--CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe-eE--EEeecccceEEEEEEecCC-
Q 005254 127 LVWDVDGGFCTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-CV--ATLDKHFSRVTSMAITSDG- 200 (706)
Q Consensus 127 ~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~--~~~~~~~~~v~~~~~~~~~- 200 (706)
...|+++.+.+..+.. ..+.|..+..+|..+. +++.+.++.|.+||.+... .. ..+.........+.|.|..
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~--~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNT--LIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCce--EEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999999988877652 2358999999998554 9999999999999987654 21 1122234567778898865
Q ss_pred CEEEEEeCCCEEEEEeCCCC
Q 005254 201 STLISAGRDKVVNLWDLRDY 220 (706)
Q Consensus 201 ~~l~~~~~dg~i~~w~~~~~ 220 (706)
.+|++.+..+-+-+||.+..
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred eeEEeccccCCCCceeeccc
Confidence 46677777788999998753
No 193
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.83 E-value=1.2e-15 Score=143.37 Aligned_cols=330 Identities=18% Similarity=0.165 Sum_probs=200.4
Q ss_pred CEE-EEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEE
Q 005254 73 KLL-FSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSIL 151 (706)
Q Consensus 73 ~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~ 151 (706)
+++ ++-..++.|.+.|..+.+.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.+++. ......++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEE
Confidence 344 3455689999999999999999986655445678999999999999999999999999999999874 44568899
Q ss_pred EcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecc-------cceEEEEEEecCCCEEEEEeC-CCEEEEEeCCCCcce
Q 005254 152 FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH-------FSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCK 223 (706)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~ 223 (706)
+++||+. ++++...++.+.++|.++.+.++.+... ...+.++..++....++..-. .+.|.+.|..+....
T Consensus 85 ~s~DG~~-~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 85 VSPDGKY-VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp E--TTTE-EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EcCCCCE-EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 9999886 3445567899999999999999887543 235667777777774544443 466666665443211
Q ss_pred eeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCC
Q 005254 224 LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDS 303 (706)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (706)
...
T Consensus 164 ~~~----------------------------------------------------------------------------- 166 (369)
T PF02239_consen 164 KVT----------------------------------------------------------------------------- 166 (369)
T ss_dssp EEE-----------------------------------------------------------------------------
T ss_pred cee-----------------------------------------------------------------------------
Confidence 000
Q ss_pred ccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeC
Q 005254 304 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383 (706)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~ 383 (706)
T Consensus 167 -------------------------------------------------------------------------------- 166 (369)
T PF02239_consen 167 -------------------------------------------------------------------------------- 166 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe----CCCcCeEEEEEecCCCeEEEE
Q 005254 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT----GHMGAVGAVAFSKKLQNFLVS 459 (706)
Q Consensus 384 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~ 459 (706)
.+.. ........ +.|++++++++...+..+.++|..+++.+..+. .|..+...+ .+|.......+
T Consensus 167 -------~i~~-g~~~~D~~--~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~ 235 (369)
T PF02239_consen 167 -------TIKV-GRFPHDGG--FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWAT 235 (369)
T ss_dssp -------EEE---TTEEEEE--E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEE
T ss_pred -------eecc-cccccccc--cCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEee
Confidence 0000 00011111 667777766666677788888888887776543 233333333 23332212222
Q ss_pred ec-CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe----eCCCcEEEEeCCCccEEEEEee
Q 005254 460 GS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG----SQDRTACVWRLPDLVSVVTFRG 534 (706)
Q Consensus 460 ~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~ 534 (706)
.. ....+-....... .......++..........+ .-+..+|+++++.+. ...+.|.++|.++.+....+..
T Consensus 236 ~~~~~~~~~~ig~~~v--~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~ 312 (369)
T PF02239_consen 236 SGLGYFAIPLIGTDPV--SVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP 312 (369)
T ss_dssp EBSSSSEEEEEE--TT--T-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH
T ss_pred ccccceecccccCCcc--ccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec
Confidence 21 1222222222111 11122344466666666666 778889999999988 4558899999999988777754
Q ss_pred cC-CcEEEEEEccCCCEEEEecCC--CcEEEEEcCCCceEEEEe
Q 005254 535 HK-RGIWSVEFSPVDQVVITASGD--KTIKIWSISDGSCLKTFE 575 (706)
Q Consensus 535 ~~-~~v~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~ 575 (706)
.. ..+..+.|+++|+.+..+..+ +.|.+||..+.+.+..+.
T Consensus 313 ~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 313 GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 32 358999999999977665543 369999999999998886
No 194
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.1e-18 Score=151.05 Aligned_cols=213 Identities=16% Similarity=0.290 Sum_probs=173.9
Q ss_pred EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC-CCEEEEeeC
Q 005254 436 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQ 514 (706)
Q Consensus 436 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~ 514 (706)
...+|.++|..++|+|-+.+.+++|+.|.+|.+|++........ .......+.+|...|--++|+|- .+.|++++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~---ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD---LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC---cccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 35689999999999999888999999999999999987643221 22456778999999999999995 478899999
Q ss_pred CCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc-CEEEEEEEeCCCEE
Q 005254 515 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLRASFLTRGAQI 593 (706)
Q Consensus 515 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l 593 (706)
|..|.+|++.+++.+..+. |...|.++.|+.||.+|++.+.|..|+|||.++++.+.+-.+|.+ .-..+.|..+|..+
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 9999999999999999988 999999999999999999999999999999999999998888875 45567888888844
Q ss_pred EEEe---CCCCEEEEECCCCe---EEEEeccCCCcEEEEEEcCCCCEEEE-EeCCCcEEEEECCchh
Q 005254 594 VSCG---ADGLVKLWTVRTGE---CIATYDKHEDKIWALAVGKKTEMFAT-GGSDALVNLWHDSTAA 653 (706)
Q Consensus 594 ~~~~---~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~vw~~~~~~ 653 (706)
-+|- .+..+-+||..+-+ .+..+.. .+.|.---+.+|.+++.. |-.|+.|+-|.+..+.
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4443 36789999876543 3344444 445555557888887654 5569999999998776
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=4.3e-18 Score=166.26 Aligned_cols=189 Identities=20% Similarity=0.259 Sum_probs=138.3
Q ss_pred EEEeeCCCcEEEEeCCCceEEEEEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee
Q 005254 414 IVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 492 (706)
|++++.-..|+|||....+.+..+. +....++++.-+....+++++|..||.|++||.+..... ........
T Consensus 1180 Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-------s~v~~~R~ 1252 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-------SLVCVYRE 1252 (1387)
T ss_pred EEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-------ccceeecc
Confidence 3333445567777776665555443 234456666655555569999999999999998865432 24555667
Q ss_pred cCcc--eEEEEEcCCCC-EEEEeeCCCcEEEEeCCCccEE--EEEeecC--C-cEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 493 HGKD--INSLAVAPNDS-LVCTGSQDRTACVWRLPDLVSV--VTFRGHK--R-GIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 493 ~~~~--i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~--~-~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
|... |..+.+.+.|- .|++|+.+|.|++||++..... ..+..|. + ..+++..+++...+|+|+. +.|+||+
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 7776 99999998775 4999999999999999874222 2222332 3 5999999999999999998 8999999
Q ss_pred cCCCceEEEEee-------cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe
Q 005254 565 ISDGSCLKTFEG-------HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611 (706)
Q Consensus 565 ~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 611 (706)
+. |+.+..++. ..+.+.+++|+|..-.||+|+.|.+|.||....++
T Consensus 1332 ~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1332 LS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 84 665554442 23568999999998899999999999999876543
No 196
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.2e-19 Score=163.11 Aligned_cols=267 Identities=21% Similarity=0.341 Sum_probs=192.3
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECC--------CCeEEEEeeccCCCeEEEEECCCCCEEEEecCCC
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS--------TLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR 124 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 124 (706)
..++..|...|++++|.|....|++++.||.|.+|+++ .-+++.+|++|.++|.|++.+++++.+.+|+.||
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 34677899999999999999999999999999999993 2368889999999999999999999999999999
Q ss_pred cEEEEECCCC----------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec--ccceEE
Q 005254 125 KVLVWDVDGG----------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK--HFSRVT 192 (706)
Q Consensus 125 ~i~vw~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~ 192 (706)
+|+.|++... .....+.||...|+.+++|+..+. |++++.||+++.|+...... .++.. ..+.-.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~--Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR--LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc--eeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 9999966321 234567899999999999998776 99999999999999866555 33322 223344
Q ss_pred EEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecC
Q 005254 193 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 272 (706)
Q Consensus 193 ~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (706)
++.+.... ++....+.....+++.+.+....+.... .+.
T Consensus 444 svd~~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~---------------------------------------s~~ 482 (577)
T KOG0642|consen 444 SVDRTSSR--PAHSLASFRFGYTSIDDMEVVSDLLIFE---------------------------------------SSA 482 (577)
T ss_pred eEeeccch--hHhhhhhcccccccchhhhhhhheeecc---------------------------------------ccC
Confidence 45554322 2222223444444444333222211100 000
Q ss_pred CCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEeccc
Q 005254 273 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352 (706)
Q Consensus 273 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (706)
....+.
T Consensus 483 ~~~~~~-------------------------------------------------------------------------- 488 (577)
T KOG0642|consen 483 SPGPRR-------------------------------------------------------------------------- 488 (577)
T ss_pred CCcccc--------------------------------------------------------------------------
Confidence 000000
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 432 (706)
...+..+.. .++..+.+++..++.|+++|..++..+.....|...+++++ +.+++.. |++++.|+.+++|.+....
T Consensus 489 ~~~in~vVs-~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsla--i~~ng~~-l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 489 YPQINKVVS-HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLA--IDPNGPY-LMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cCccceEEe-cCCCCeeEecccCCceecccccccccchheeeccceeccee--ecCCCce-EEeecCCceeehhhccchh
Confidence 001111111 23557888888899999999999999999999999999998 8888887 9999999999999998877
Q ss_pred EEEEEeCCC
Q 005254 433 CVGVGTGHM 441 (706)
Q Consensus 433 ~~~~~~~~~ 441 (706)
++.....|.
T Consensus 565 ~~~es~~~r 573 (577)
T KOG0642|consen 565 CVLESTAHR 573 (577)
T ss_pred eeecccccc
Confidence 776655543
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=2.2e-17 Score=149.04 Aligned_cols=486 Identities=13% Similarity=0.139 Sum_probs=277.9
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccE-EEEEEcc-------CCCEEEEEeccCeEEEEECCCCeEE
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTI-TALALSP-------DDKLLFSSGHSREIRVWDLSTLKCL 95 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i-~~l~~s~-------~~~~l~s~~~d~~i~iwd~~~~~~~ 95 (706)
++.++.....+.++.++.+.+|+-.+...+..+.-...-| +.+-.-+ ....++.++.||.+.|-+ +.++..
T Consensus 19 ~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~rVE 97 (737)
T KOG1524|consen 19 CVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSARVE 97 (737)
T ss_pred eecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-ccchhh
Confidence 5777888877877777777777654444332222211111 1111111 235788889999999987 677888
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
+.+..|.+.+.+-.|+|||.-|+++++||.|++|.-. |-+...+.....+|.|++|.|+++. ++++ ..+.+.+=.+
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~-vl~c--~g~h~~IKpL 173 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNS-IVFC--QGGHISIKPL 173 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCc-eEEe--cCCeEEEeec
Confidence 8899999999999999999999999999999999954 4444444557789999999999765 3333 3456777777
Q ss_pred CCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchh
Q 005254 176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255 (706)
Q Consensus 176 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (706)
.....+-..+.|.+-|.++.|++....+++|++|-..++||.........
T Consensus 174 ~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S------------------------------ 223 (737)
T KOG1524|consen 174 AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS------------------------------ 223 (737)
T ss_pred ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC------------------------------
Confidence 77777777889999999999999999999999999999999654322222
Q ss_pred hhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeee
Q 005254 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 335 (706)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 335 (706)
..+..+++++++.|+ ..+++++. +.++
T Consensus 224 ---------------------------------------------~~~ey~ITSva~npd-~~~~v~S~-nt~R------ 250 (737)
T KOG1524|consen 224 ---------------------------------------------AAEEYAITSVAFNPE-KDYLLWSY-NTAR------ 250 (737)
T ss_pred ---------------------------------------------Chhccceeeeeeccc-cceeeeee-eeee------
Confidence 223445666666666 22222222 1121
Q ss_pred ccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEE
Q 005254 336 VPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 415 (706)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 415 (706)
......+.|..++|++ ++..+++++..|.+.+--.-..+.. ...+=+
T Consensus 251 ------------~~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A~~ieq~l~--------------------~~n~~~ 297 (737)
T KOG1524|consen 251 ------------FSSPRVGSIFNLSWSA-DGTQATCGTSTGQLIVAYAIEQQLV--------------------SGNLKA 297 (737)
T ss_pred ------------ecCCCccceEEEEEcC-CCceeeccccCceEEEeeeehhhhh--------------------hcccee
Confidence 1122356788888887 7778888888777655322111100 000012
Q ss_pred EeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCc
Q 005254 416 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (706)
Q Consensus 416 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (706)
+......|.+-|+.++.. ..-.....+...+..-. .|+++.. ..+++|.-.... ....+.+...
T Consensus 298 t~~~r~~I~vrdV~~~v~--d~LE~p~rv~k~sL~Y~---hLvvaTs-~qvyiys~knwn----------tpiiidgre~ 361 (737)
T KOG1524|consen 298 TSKSRKSITVRDVATGVQ--DILEFPQRVVKFSLGYG---HLVVATS-LQVYIYSEKNWN----------TPIIIDGRED 361 (737)
T ss_pred EeeccceEEeehhhhhHH--HHhhCccceeeeeecee---EEEEEec-cEEEEEecCCcc----------CcEEEecccc
Confidence 223334455555554432 11122344444443221 2333322 345665533221 1111111111
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcE-----EEEEEccCCCEEEEe--cCCCcEEEEEc-CC
Q 005254 496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI-----WSVEFSPVDQVVITA--SGDKTIKIWSI-SD 567 (706)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~--~~dg~i~iwd~-~~ 567 (706)
.+.-+.-+ ...+++. ..-+|.+|..+ ++.....+.....+ ..+... ...|+.- .....+.++|. .+
T Consensus 362 tr~lieq~-ek~fli~--dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa--ndtLaird~ad~kvlhlFd~ist 435 (737)
T KOG1524|consen 362 TRNLIEQG-EKYFLIL--DGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA--NDTLAIRDNADPKVLHLFDLIST 435 (737)
T ss_pred chhHhhhh-hhheEEe--cCcEEEEEEec-CceecCCCCCCcccccccceeeecc--cceEEeecCCCCeeEEeccCCCC
Confidence 11111111 1112222 22345555442 22221111111100 112222 2233332 23345778887 66
Q ss_pred CceEEE--EeecccCEEEEEEE----eCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 568 GSCLKT--FEGHTSSVLRASFL----TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 568 ~~~~~~--~~~~~~~i~~~~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
|+.... +-.|...|..++.. ++++.++.-..++.++|=.+++-..-..+-.-...|..++|+...+ +++|-.|
T Consensus 436 gk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGTmVhtLawndttN-iLcglqD 514 (737)
T KOG1524|consen 436 GKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDTTN-ILCGLQD 514 (737)
T ss_pred CcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhhhhhhhhhccccc-eeeeecc
Confidence 665421 12266666666654 3556778888888888777654322222223345688899975554 5668889
Q ss_pred CcEEEEECCchh
Q 005254 642 ALVNLWHDSTAA 653 (706)
Q Consensus 642 g~i~vw~~~~~~ 653 (706)
+.+.||-.+...
T Consensus 515 t~fsVWy~pn~v 526 (737)
T KOG1524|consen 515 TCFSVWYYPNEV 526 (737)
T ss_pred ceEEEEEcCCcc
Confidence 999999876643
No 198
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.5e-18 Score=156.90 Aligned_cols=166 Identities=22% Similarity=0.407 Sum_probs=136.8
Q ss_pred EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe-eccCCCeEEEEECC--CCCEEEEecCCCcEEE
Q 005254 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHP--SGGLLATAGADRKVLV 128 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~v 128 (706)
+.+.|.||++.|+|++|+.+|.+|++|++|-.+.|||.-..++++.+ .+|...|.++.|-| +.+.+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 45788999999999999999999999999999999999988888877 57999999999999 5678899999999999
Q ss_pred EECCCC----------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeE----------EEeeccc
Q 005254 129 WDVDGG----------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV----------ATLDKHF 188 (706)
Q Consensus 129 w~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----------~~~~~~~ 188 (706)
+|+.+. +....+..|...|..++-.|++. +.+.++++||+|+-+|+++...- ..+...-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999752 34556678999999999999863 46899999999999999763211 1111222
Q ss_pred ceEEEEEEecCC-CEEEEEeCCCEEEEEeCC
Q 005254 189 SRVTSMAITSDG-STLISAGRDKVVNLWDLR 218 (706)
Q Consensus 189 ~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~ 218 (706)
-...++.++|.. .+|++|+.|-..++||.+
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 356788999864 578899999999999953
No 199
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=2.2e-17 Score=136.98 Aligned_cols=282 Identities=22% Similarity=0.326 Sum_probs=200.3
Q ss_pred CCCcEEEEECCCCe--E-EEEeeCCCCcEEEEEEcCCCCceEEEEEecC-------CeEEEEECCCC---------eeEE
Q 005254 122 ADRKVLVWDVDGGF--C-THYFKGHKGVVSSILFHPDTDKSLLFSGSDD-------ATVRVWDLLAK---------KCVA 182 (706)
Q Consensus 122 ~d~~i~vw~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~---------~~~~ 182 (706)
.|+.|.+.+++.+. . ...|..|.+.|+.++-+|.... +|+++..+ -.+.||.+... +++.
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~-ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQR-ILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCc-eEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 46778777775542 2 2446678999999999997544 56665442 24779987543 2334
Q ss_pred Eee-cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcc-eeeecCcceeeeEEeeCCCCCcccccccccchhhhccc
Q 005254 183 TLD-KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC-KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 260 (706)
Q Consensus 183 ~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (706)
.+. .+-+.+.|+.|.|++..+++.. |..|.+|+++.... ...+.....
T Consensus 117 ~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s----------------------------- 166 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSES----------------------------- 166 (370)
T ss_pred cCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccc-----------------------------
Confidence 443 4567999999999999999887 88899999986553 222111100
Q ss_pred cccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccc
Q 005254 261 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK 340 (706)
Q Consensus 261 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 340 (706)
T Consensus 167 -------------------------------------------------------------------------------- 166 (370)
T KOG1007|consen 167 -------------------------------------------------------------------------------- 166 (370)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee-eCCcceEEEeeeeeecCCCEEEEEeeC
Q 005254 341 MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSK 419 (706)
Q Consensus 341 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~~~ 419 (706)
.++.....+-+|+|......+....++++..||+.+......+ ..|...+..++ +.|+.+.+|++++.
T Consensus 167 ---------~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD--fNpnkq~~lvt~gD 235 (370)
T KOG1007|consen 167 ---------AEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLD--FNPNKQHILVTCGD 235 (370)
T ss_pred ---------ccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeecc--CCCCceEEEEEcCC
Confidence 0012223344455533333344455689999999988776554 46888899999 99999999999999
Q ss_pred CCcEEEEeCCC-ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC-------------------
Q 005254 420 DNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE------------------- 479 (706)
Q Consensus 420 dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~------------------- 479 (706)
||.|++||.+. ..++..+.+|..-|.++.|+|....++++++.|..|.+|.......+..
T Consensus 236 dgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~ 315 (370)
T KOG1007|consen 236 DGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV 315 (370)
T ss_pred CccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence 99999999975 4578889999999999999998888999999999999998754431110
Q ss_pred cccccceeEEEeecCcceEEEEEcCCCC-EEEEeeCCCcEEEEeCCC
Q 005254 480 QPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 480 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~ 525 (706)
.+...........|...|.+++||.-.. .+|+-+.||.+.|=.+..
T Consensus 316 kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 316 KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 1122223446778999999999998554 567889999998876543
No 200
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=3.7e-16 Score=142.49 Aligned_cols=378 Identities=18% Similarity=0.229 Sum_probs=238.4
Q ss_pred EEEEeeCCeEEEEEccCCeEEEeecCC---CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEE
Q 005254 33 FIACACGESINIVDLSNASIKSTIEGG---SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA 109 (706)
Q Consensus 33 ~l~~~~~~~i~i~d~~~~~~~~~l~~~---~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 109 (706)
.+++-+...+.+|+............+ ..+.+..++|++|+++|.+. +..+.|++..++..+.+.... .+.++.
T Consensus 4 ~~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~ 80 (566)
T KOG2315|consen 4 VYAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLL 80 (566)
T ss_pred eEEEEccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeee
Confidence 345555568899987654433333333 44578889999999998775 448999999998655444433 889999
Q ss_pred ECCCCCEEEEec-----C-----CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe
Q 005254 110 CHPSGGLLATAG-----A-----DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (706)
Q Consensus 110 ~s~~~~~l~~~~-----~-----d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 179 (706)
|||-+.+|.+-- . .-.+.+|+++++.....+......-++..|++|.. +++--..+.+.+|+..+.+
T Consensus 81 fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~ 157 (566)
T KOG2315|consen 81 FSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFK 157 (566)
T ss_pred ecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchh---hhhhhhcceEEEEecCCcc
Confidence 999999998731 1 24578999999766555554433337999999865 5555566789999987644
Q ss_pred eEEEeecccceEEEEEEecCCC--EEEE-----EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccccc
Q 005254 180 CVATLDKHFSRVTSMAITSDGS--TLIS-----AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 252 (706)
Q Consensus 180 ~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (706)
... -+-|...|..+.++|.+. .+++ .|.-+.|++|..........+.... |+.
T Consensus 158 ~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ks------FFk------------- 217 (566)
T KOG2315|consen 158 TIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKS------FFK------------- 217 (566)
T ss_pred cee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcc------ccc-------------
Confidence 332 234677888999988743 3332 2344566666554211111000000 000
Q ss_pred chhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEE
Q 005254 253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 332 (706)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (706)
.|.
T Consensus 218 -------------------adk---------------------------------------------------------- 220 (566)
T KOG2315|consen 218 -------------------ADK---------------------------------------------------------- 220 (566)
T ss_pred -------------------cce----------------------------------------------------------
Confidence 000
Q ss_pred eeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCE
Q 005254 333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412 (706)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 412 (706)
..+.|......+|+.++.+ +...+.
T Consensus 221 ------------------------vqm~WN~~gt~LLvLastd------------------------------VDktn~- 245 (566)
T KOG2315|consen 221 ------------------------VQMKWNKLGTALLVLASTD------------------------------VDKTNA- 245 (566)
T ss_pred ------------------------eEEEeccCCceEEEEEEEe------------------------------ecCCCc-
Confidence 0111111111111111110 111110
Q ss_pred EEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEE-ecCCCeEEEEEecCCCCCCCcccccceeEEEe
Q 005254 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS-GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (706)
+-..+.++++++++ +.....--...++|.++.|+++++.+.++ |-.-.++.+||++ ....+.
T Consensus 246 ---SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-------------~~~v~d 308 (566)
T KOG2315|consen 246 ---SYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-------------GKPVFD 308 (566)
T ss_pred ---cccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-------------CCEeEe
Confidence 11123356666666 33333333457999999999999866554 4556789999987 444555
Q ss_pred ecCcceEEEEEcCCCCEEEEeeCC---CcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC------CCcEEE
Q 005254 492 AHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG------DKTIKI 562 (706)
Q Consensus 492 ~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~i 562 (706)
-..++-+++-|+|.|++++.++-+ |.+.+||+.+.+++..+..... +-+.|+|||++++++.. |+.++|
T Consensus 309 f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Ki 386 (566)
T KOG2315|consen 309 FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKI 386 (566)
T ss_pred CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEE
Confidence 566777899999999999987754 7899999999988888876443 55899999999999875 677999
Q ss_pred EEcCCCceEEEEeecccCEEEEEEEeC
Q 005254 563 WSISDGSCLKTFEGHTSSVLRASFLTR 589 (706)
Q Consensus 563 wd~~~~~~~~~~~~~~~~i~~~~~s~~ 589 (706)
|+. +|..+....-.. +...+.|-|-
T Consensus 387 why-tG~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 387 WHY-TGSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred EEe-cCceeehhhhhH-hHhheeeeec
Confidence 998 577665443222 5677777763
No 201
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.81 E-value=1.5e-15 Score=142.71 Aligned_cols=320 Identities=16% Similarity=0.112 Sum_probs=203.0
Q ss_pred EEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeC
Q 005254 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 239 (706)
Q Consensus 160 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 239 (706)
++++-..+|.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+.+.+++.......+.+++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 44566678999999999999999997655544557899999999999999999999999999887776655444444443
Q ss_pred CCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCee
Q 005254 240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319 (706)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (706)
+|
T Consensus 88 DG------------------------------------------------------------------------------ 89 (369)
T PF02239_consen 88 DG------------------------------------------------------------------------------ 89 (369)
T ss_dssp TT------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 33
Q ss_pred EEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEE-EEecCCcEEEEeCCCceeeEeeeCC---
Q 005254 320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA-VATNIEQVQVYDLSSMSCSYVLAGH--- 395 (706)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~--- 395 (706)
++++ +....+.+.++|..+.+.+..+...
T Consensus 90 -----------------------------------------------~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~ 122 (369)
T PF02239_consen 90 -----------------------------------------------KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP 122 (369)
T ss_dssp -----------------------------------------------TEEEEEEEETTEEEEEETTT--EEEEEE--EE-
T ss_pred -----------------------------------------------CEEEEEecCCCceeEeccccccceeeccccccc
Confidence 2333 3345577777777777776665533
Q ss_pred ----cceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEE-EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 396 ----SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG-VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 396 ----~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
...+..+. .++....+++.--+.+.|.+.|+...+.+. .............|+|+++.++++...++.|-++|
T Consensus 123 ~~~~~~Rv~aIv--~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 123 VDGPESRVAAIV--ASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp TTTS---EEEEE--E-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred ccccCCCceeEE--ecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence 23344553 566666645555666889888987754333 22234456778899999997777777888999999
Q ss_pred ecCCCCCCCcccccceeEEE----eecCcceEEE---------EEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCC
Q 005254 471 FDGLSDDAEQPMNLKAKAVV----AAHGKDINSL---------AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR 537 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~---------~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 537 (706)
....+. .... ..|..+...+ +....+...++.-....+.+||..+.+.+..+.....
T Consensus 201 ~~~~k~----------v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~ 270 (369)
T PF02239_consen 201 TKTGKL----------VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG 270 (369)
T ss_dssp TTTTEE----------EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS
T ss_pred eccceE----------EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC
Confidence 876531 1111 1112222211 1122333333333334677899999999999998777
Q ss_pred cEEEEEEccCCCEEEEe----cCCCcEEEEEcCCCceEEEEeecc-cCEEEEEEEeCCCEEEEEeCC--CCEEEEECCCC
Q 005254 538 GIWSVEFSPVDQVVITA----SGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTRGAQIVSCGAD--GLVKLWTVRTG 610 (706)
Q Consensus 538 ~v~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~ 610 (706)
+ ..+..+|+++++.+. ...++|.++|.++.+.+..+.... ..+..+.|++||+++..+..+ +.|.+||..+.
T Consensus 271 g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 271 G-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp S---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred c-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 7 788889999999987 455889999999998887775332 358999999999977554443 36999999999
Q ss_pred eEEEEec
Q 005254 611 ECIATYD 617 (706)
Q Consensus 611 ~~~~~~~ 617 (706)
+.+..+.
T Consensus 350 ~~~~~i~ 356 (369)
T PF02239_consen 350 KEKKRIP 356 (369)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9998886
No 202
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.81 E-value=1.4e-17 Score=165.38 Aligned_cols=181 Identities=20% Similarity=0.228 Sum_probs=138.1
Q ss_pred EEccCCeEEEeecCCCccEEEEEEccCC-CEEEEEeccCeEEEEECCCC-------eEEEEeeccCCCeEEEEECCCCCE
Q 005254 45 VDLSNASIKSTIEGGSDTITALALSPDD-KLLFSSGHSREIRVWDLSTL-------KCLRSWKGHDGPAIGMACHPSGGL 116 (706)
Q Consensus 45 ~d~~~~~~~~~l~~~~~~i~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~ 116 (706)
|++ .|..+..|..|...|..++.++.. .++++|+.||+|++||...- +...++......+.++.+.+.+..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 653 577888899999999999988765 99999999999999998532 233344445788999999999999
Q ss_pred EEEecCCCcEEEEECCCC--e-----EEEEe--eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEee--
Q 005254 117 LATAGADRKVLVWDVDGG--F-----CTHYF--KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-- 185 (706)
Q Consensus 117 l~~~~~d~~i~vw~~~~~--~-----~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-- 185 (706)
+|+++.||.|.+.+++.. + +.... +.....|..-+|........++.+...+.|..||++.......++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999999762 1 11111 122233445555554444478888888999999998776554442
Q ss_pred cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeee
Q 005254 186 KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 186 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
...+.|++++.+|.+.++++|+..|.+.+||++-+..+...
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc
Confidence 34578999999999999999999999999999877665544
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=9.1e-17 Score=138.43 Aligned_cols=225 Identities=12% Similarity=0.218 Sum_probs=167.7
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC--CeEEEEEecCCCCCCCcccccceeE
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKA 488 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~~~~~~ 488 (706)
..++..|+.|| .++|+.+..............|-.+-|+.. +++..+.+ ..++++++... ...
T Consensus 17 ~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~-----------~~I 81 (391)
T KOG2110|consen 17 STLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKK-----------TTI 81 (391)
T ss_pred eeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccC-----------ceE
Confidence 33366677666 456666544333333334445666667765 55555444 45888887654 222
Q ss_pred EEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee---cCCcEEEEEEccCCCEEEEec--CCCcEEEE
Q 005254 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVITAS--GDKTIKIW 563 (706)
Q Consensus 489 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw 563 (706)
.......+|.++.++.+ .|+++-.+ .|+|||+++.+.+.++.. +...+.++.+++.+.+||.-+ ..|.|.+|
T Consensus 82 Ce~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 82 CEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 22334566888887644 56666554 499999999999887764 445566666666777888643 46889999
Q ss_pred EcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCC-EEEEECCCCeEEEEeccC--CCcEEEEEEcCCCCEEEEEeC
Q 005254 564 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL-VKLWTVRTGECIATYDKH--EDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 564 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~ 640 (706)
|+.+-+.+..+..|.+++.+++|+++|.+||++++.|+ |||+.+.+|+.+..++.- ...|.+++|+||+++|++.+.
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 99999999999999999999999999999999999996 689999999999999832 446789999999999999999
Q ss_pred CCcEEEEECCchh
Q 005254 641 DALVNLWHDSTAA 653 (706)
Q Consensus 641 dg~i~vw~~~~~~ 653 (706)
.++|.+++++...
T Consensus 239 TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 239 TETVHIFKLEKVS 251 (391)
T ss_pred CCeEEEEEecccc
Confidence 9999999998765
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=5.5e-16 Score=133.67 Aligned_cols=233 Identities=11% Similarity=0.155 Sum_probs=174.4
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe--ccCeEEEEECCCCeEEEEeeccC
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG--HSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
+.|..|...|..|+.+...+|+................|..+-||.. ++|..+ +...+++.+.+.+..+..+. ..
T Consensus 11 ~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fp 87 (391)
T KOG2110|consen 11 IGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIF-FP 87 (391)
T ss_pred eeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEe-cC
Confidence 45889999999999999999987765543333333456777778854 455443 34569999999988888877 45
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCC---CCcEEEEEEcCCCCceEEEE--EecCCeEEEEECCC
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH---KGVVSSILFHPDTDKSLLFS--GSDDATVRVWDLLA 177 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~--~~~dg~i~vwd~~~ 177 (706)
.+|.++.++. ++|+++-.+. |+|||+.+.++++++..- ...+.++++++.+.+ ++- ....|.|.+||..+
T Consensus 88 t~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~y--lAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCY--LAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred CceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCce--EEecCCCCCceEEEEEccc
Confidence 7899999884 5677765544 999999999999887643 334555555544333 443 34579999999999
Q ss_pred CeeEEEeecccceEEEEEEecCCCEEEEEeCCCE-EEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhh
Q 005254 178 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV-VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI 256 (706)
Q Consensus 178 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (706)
-+.+..+..|.+.+.+++|+++|.+|+++++.|+ |||+.+.+++.+.++.....
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~------------------------- 217 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY------------------------- 217 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-------------------------
Confidence 9999999999999999999999999999999885 68999888776665432211
Q ss_pred hccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeec
Q 005254 257 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 336 (706)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 336 (706)
.-.+.+++|+|+.+.|.+.+..+++.++.+...
T Consensus 218 -----------------------------------------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 218 -----------------------------------------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred -----------------------------------------------eeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 223567778888888888888888888887765
Q ss_pred c
Q 005254 337 P 337 (706)
Q Consensus 337 ~ 337 (706)
.
T Consensus 251 ~ 251 (391)
T KOG2110|consen 251 S 251 (391)
T ss_pred c
Confidence 4
No 205
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.5e-16 Score=149.14 Aligned_cols=517 Identities=14% Similarity=0.199 Sum_probs=335.4
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe---------------EEEEeeCCCCcEEEEEEcCCCCceEEEEEec
Q 005254 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF---------------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166 (706)
Q Consensus 102 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 166 (706)
.....|++|+....|+|+|+.||.+++-.+.+.. .-+.+.+|.+.|..+.|+.+.+. |-+...
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK--LTtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK--LTTSDT 91 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc--ccccCC
Confidence 4567899999999999999999999999886531 22457799999999999987666 899999
Q ss_pred CCeEEEEECCCCeeEEEe--ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCc
Q 005254 167 DATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAF 244 (706)
Q Consensus 167 dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (706)
+|.|.+|-+-.+.-.... ....+-|.+|+|..||..+.....||.|.+=.++..
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN------------------------ 147 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN------------------------ 147 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc------------------------
Confidence 999999998776543322 234567899999999999999999997766444322
Q ss_pred ccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEee
Q 005254 245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA 324 (706)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 324 (706)
++|.-+-. ......+.++++.+.++..-.
T Consensus 148 --------------------------------RIwgKeLk-------------------g~~l~hv~ws~D~~~~Lf~~a 176 (1189)
T KOG2041|consen 148 --------------------------------RIWGKELK-------------------GQLLAHVLWSEDLEQALFKKA 176 (1189)
T ss_pred --------------------------------eecchhcc-------------------hheccceeecccHHHHHhhhc
Confidence 22321111 112245667788888888888
Q ss_pred CCceEEEEeeeccccceeeEE----eeEecccCceeeEeeE-------eCCCCcEEEEEecCCcEEEEeCCCceeeEeee
Q 005254 325 DQQLLLYTTVEVPEKKMELIL----SKRLVGYNEEILDLKF-------LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA 393 (706)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~-------~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~ 393 (706)
+|...+|+...+-..+..... ..........+..+.+ .+++...++++..+|.+.+..-.+......+.
T Consensus 177 nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d 256 (1189)
T KOG2041|consen 177 NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD 256 (1189)
T ss_pred CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe
Confidence 888888888776554443332 2223333344555555 45788899999999999988766544443333
Q ss_pred CCcceEEEeeeeeecCCCEEEEEeeCCC---------cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec---
Q 005254 394 GHSEIVLCLDTCALSSGKILIVTGSKDN---------SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--- 461 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--- 461 (706)
.. -.+.... +.+++.. +++++.+. .|.++. .-|..+..++.....|++++|-..|-.+.++..
T Consensus 257 tg-m~~vgak--Wnh~G~v-LAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfi 331 (1189)
T KOG2041|consen 257 TG-MKIVGAK--WNHNGAV-LAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFI 331 (1189)
T ss_pred cc-cEeecce--ecCCCcE-EEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEecceE
Confidence 33 3444555 7788887 55554332 344443 346677778888888999888766532111110
Q ss_pred ---------------------------CCCeEEEEEecCCCCCCCcccccceeEEEe-----------ec---------C
Q 005254 462 ---------------------------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVA-----------AH---------G 494 (706)
Q Consensus 462 ---------------------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~-----------~~---------~ 494 (706)
..-.|.+||..+.................. ++ .
T Consensus 332 yfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~ 411 (1189)
T KOG2041|consen 332 YFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENR 411 (1189)
T ss_pred EEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhcc
Confidence 112355666544321110000000000000 00 0
Q ss_pred --------------------cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE--------------------------
Q 005254 495 --------------------KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS-------------------------- 528 (706)
Q Consensus 495 --------------------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-------------------------- 528 (706)
..|...-..-++..++.++.+ .+.+|.....+.
T Consensus 412 ~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d 490 (1189)
T KOG2041|consen 412 SRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQD 490 (1189)
T ss_pred cceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhh
Confidence 011111222256667777765 477886432111
Q ss_pred ------EEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCE
Q 005254 529 ------VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602 (706)
Q Consensus 529 ------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 602 (706)
..++.+..++|-+++.+ .++|..+-..|.|.-|.+.+........ -...+..+.+..+..+++...--|.+
T Consensus 491 ~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~ 567 (1189)
T KOG2041|consen 491 RTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVV 567 (1189)
T ss_pred ceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhcee
Confidence 12344566788888876 6889999999999999998887776665 45678899999888999999888999
Q ss_pred EEEECC---CCeEEE-EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHH---HHHHHHHHHhcchhhhh
Q 005254 603 KLWTVR---TGECIA-TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEA---FRKEEEAVLRGQELENA 675 (706)
Q Consensus 603 ~iwd~~---~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 675 (706)
.+.|+. +|..+. .+......|+.+.|..|+..|+.-.+...+.|++-.++.+.... +...++..+....+++.
T Consensus 568 tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgndpeEp~s~sGyIc~FedLeitsVlld~I 647 (1189)
T KOG2041|consen 568 TFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPEEPSSVSGYICLFEDLEITSVLLDKI 647 (1189)
T ss_pred eeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCcCccccccccceEEEeeceEEEEEEHhhH
Confidence 998886 455544 45566778999999999888887777777888876655433221 23344444555555555
Q ss_pred hhccch-hHhhheeeecCCcchHHHHHHhh
Q 005254 676 VLDADY-TKAIQVAFELRRPHKLFELFASV 704 (706)
Q Consensus 676 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 704 (706)
+..++- .+.-.+.++.+.+++.-+++|.+
T Consensus 648 l~~pE~pnk~~ii~~~ikslrD~~~Lve~v 677 (1189)
T KOG2041|consen 648 LLTPENPNKTCIIEVMIKSLRDVMNLVEAV 677 (1189)
T ss_pred hcCcCCCCcceEEEEEehhhhhHHHHHHHh
Confidence 555544 46667777777777777777654
No 206
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=1.4e-17 Score=140.83 Aligned_cols=267 Identities=14% Similarity=0.132 Sum_probs=183.2
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 444 (706)
....+.+...++.|.+|++...+-...+.....++..+. ++|+++.++.+..-+-+|.+|.+.+.+.... +-....+
T Consensus 60 s~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~--WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~ 136 (447)
T KOG4497|consen 60 SCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSIS--WSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNV 136 (447)
T ss_pred ceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeee--ECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCc
Confidence 344566667778999999999988888888888888887 9999999899999999999999998776544 3344556
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
..++|+|+|+ +.+..+.......+++... ........+....-..+.+.|+|||..|++-..--.-++
T Consensus 137 kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c-------~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv---- 204 (447)
T KOG4497|consen 137 KGYAFHPDGQ-FCAILSRRDCKDYVQISSC-------KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV---- 204 (447)
T ss_pred eeEEECCCCc-eeeeeecccHHHHHHHHhh-------HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee----
Confidence 8999999998 5554443211111111100 011122223334455788999999988876432111111
Q ss_pred CccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEe-----------------------------
Q 005254 525 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE----------------------------- 575 (706)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------------- 575 (706)
.... ..-.+..++|+|.+++|++|+.|+.+||.+--+.+...++-
T Consensus 205 -----~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 205 -----YAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred -----eeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 1111 23467889999999999999999999886543322211110
Q ss_pred -------------------------------------ecccCEEEEEEEeCCCEEEEEeCC--CCEEEEECCCCeEEEEe
Q 005254 576 -------------------------------------GHTSSVLRASFLTRGAQIVSCGAD--GLVKLWTVRTGECIATY 616 (706)
Q Consensus 576 -------------------------------------~~~~~i~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~ 616 (706)
...-.+--++|++|..|+++-... +.+-+||++.-+....+
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 011235668999999998886543 57899999877755444
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 617 DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 617 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
....+|.+..|.|....|+.+.....+.+|...-..
T Consensus 359 -iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 359 -IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred -hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence 346789999999999999888888889999876643
No 207
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.9e-18 Score=153.95 Aligned_cols=315 Identities=16% Similarity=0.294 Sum_probs=236.9
Q ss_pred EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee-ccCCCeEEEEECC--CCCEEEEecCCCcEEE
Q 005254 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK-GHDGPAIGMACHP--SGGLLATAGADRKVLV 128 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~d~~i~v 128 (706)
....|.+|.+.|..|.|...|..|++++.|..|.+||+.+++....+. +|...|..-.|-| +...+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 346788999999999999999999999999999999999998877764 6989999989988 4568999999999998
Q ss_pred EECCC-CeE--EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe---ecccc---eEEEEEEecC
Q 005254 129 WDVDG-GFC--THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFS---RVTSMAITSD 199 (706)
Q Consensus 129 w~~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~---~v~~~~~~~~ 199 (706)
=.+.. +.+ ...+..|.++|..++.-|+.. .-+.+++.|+.+.-.|++.+.....+ ..+.. ....++..|.
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 87743 322 345567999999999999754 46889999999999999877654333 22333 5677888886
Q ss_pred CC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEE
Q 005254 200 GS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278 (706)
Q Consensus 200 ~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 278 (706)
.. .+++++.|..+++||.+.......-. .+. .+.|.
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~---~~~--~f~p~-------------------------------------- 329 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNG---VLD--KFCPH-------------------------------------- 329 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccc---hhh--hcCCc--------------------------------------
Confidence 55 78899999999999976532211000 000 00000
Q ss_pred EECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccc------eeeEEeeEeccc
Q 005254 279 WNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK------MELILSKRLVGY 352 (706)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 352 (706)
.......-.|+++.++.++..+++...|-.+++++........ ..........+|
T Consensus 330 -------------------hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGH 390 (559)
T KOG1334|consen 330 -------------------HLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGH 390 (559)
T ss_pred -------------------cccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccc
Confidence 0111334568899999999999999999999999554332211 011111224444
Q ss_pred --CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 353 --NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 353 --~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
...|..+-|..+...++++|+.-|.|.+|+-.+++.+..+.+...-|.|+. ..|--.. |++.+-|..|+||-..+
T Consensus 391 rN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLE--pHP~~Pv-LAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 391 RNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLE--PHPHLPV-LASSGIDHDVKIWTPLT 467 (559)
T ss_pred ccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccC--CCCCCch-hhccCCccceeeecCCc
Confidence 345888999999999999999999999999999999999999888999997 6666665 99999999999998754
Q ss_pred ce
Q 005254 431 RC 432 (706)
Q Consensus 431 ~~ 432 (706)
.+
T Consensus 468 ~e 469 (559)
T KOG1334|consen 468 AE 469 (559)
T ss_pred cc
Confidence 43
No 208
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=3.9e-17 Score=135.67 Aligned_cols=254 Identities=15% Similarity=0.259 Sum_probs=181.9
Q ss_pred eEEEeeeeeecCCCEEEEEeeC----CCcEEEE--eCCCceEEEEE-eCCCcCeEEEEEecCCC----eEEEEecCCCeE
Q 005254 398 IVLCLDTCALSSGKILIVTGSK----DNSVRLW--DSESRCCVGVG-TGHMGAVGAVAFSKKLQ----NFLVSGSSDHTI 466 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~----dg~i~i~--d~~~~~~~~~~-~~~~~~v~~~~~~~~~~----~~l~~~~~d~~i 466 (706)
++.+++|..-++.+..++.|+- .+.|.+. |..+++.+... ..|.-+++.+.|.|+.. .+|++. +..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeE
Confidence 3455554444555656777753 3445554 33344444332 35788999999999863 244443 3579
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCcc---EEEEEeecCCcEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLV---SVVTFRGHKRGIWSV 542 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~ 542 (706)
++|.+.......... ..........+..++++..|+. +-+++.+.+-|-+..|||++++. ...++-.|..+|..+
T Consensus 124 RlWri~~ee~~~~~~-~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQ-SVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEeccCcCCceehh-hhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 999987532211111 1111122345677899999987 66899999999999999999863 366778899999999
Q ss_pred EEccCC-CEEEEecCCCcEEEEEcCCCceEEEEe---ecccCEEEEEEEeC-CCEEEEEeCC-CCEEEEECCCC-eEEEE
Q 005254 543 EFSPVD-QVVITASGDKTIKIWSISDGSCLKTFE---GHTSSVLRASFLTR-GAQIVSCGAD-GLVKLWTVRTG-ECIAT 615 (706)
Q Consensus 543 ~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~~-~~~l~~~~~d-g~i~iwd~~~~-~~~~~ 615 (706)
+|...+ +.+|+.+.||.+|++|++..+.-..+. ....+...++|++. -+++|+-..| ..|.|.|++.. .++..
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 999865 578999999999999998765433322 22457888999874 4577776665 47999999864 68899
Q ss_pred eccCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCchhH
Q 005254 616 YDKHEDKIWALAVGKKT-EMFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 616 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~ 654 (706)
+++|.+.|+.++|.|.. ..|.|+|.|..+.+||+.....
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 99999999999999975 5799999999999999976554
No 209
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=3.8e-17 Score=159.82 Aligned_cols=283 Identities=18% Similarity=0.233 Sum_probs=202.8
Q ss_pred eEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCc---ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC-C--
Q 005254 357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS---EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-S-- 430 (706)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~-- 430 (706)
..+.|.| -...++++.....|++||.+.++....+..+. ..|+.+.. ....+..++++++.||.|+||+-. +
T Consensus 1068 k~~~~hp-f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~l-iNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1068 KTLKFHP-FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLEL-INEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred ceeeecC-CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeee-ecccchhheeeeccCceEEEeccccccc
Confidence 3344444 55678888888999999999998877776544 34555542 334455569999999999999643 2
Q ss_pred --ceEEEEEeC-------CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEE
Q 005254 431 --RCCVGVGTG-------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 431 --~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (706)
.+.+....+ ..+.-.-+.|..... .|++++.-..|+|||...... ......+.+..++++.
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~---------~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQV---------VADIPYGSSTLVTALS 1215 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEeccccee---------EeecccCCCccceeec
Confidence 223322221 112223356666655 566777789999999975421 2222333455567665
Q ss_pred EcC-CCCEEEEeeCCCcEEEEeCCCc---cEEEEEeecCCc--EEEEEEccCCC-EEEEecCCCcEEEEEcCCCceE--E
Q 005254 502 VAP-NDSLVCTGSQDRTACVWRLPDL---VSVVTFRGHKRG--IWSVEFSPVDQ-VVITASGDKTIKIWSISDGSCL--K 572 (706)
Q Consensus 502 ~s~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~--v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~--~ 572 (706)
-+- .|+.+++|..||.|++||.+.. ..+...+.|+.. |..+.+.+.|- .|++|+.||.|++||++..... .
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence 543 5799999999999999998754 356777888887 99999988665 4999999999999999874222 2
Q ss_pred EEeecc--c-CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccC-------CCcEEEEEEcCCCCEEEEEeCCC
Q 005254 573 TFEGHT--S-SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-------EDKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 573 ~~~~~~--~-~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg 642 (706)
.+..|. + ..+++..+++...+|+|+. +.|+||++ .|+.+..++.+ .+.+.|++|+|-.-++++|+.|.
T Consensus 1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCc
Confidence 233333 3 5899999999999999998 99999998 46655555432 34679999999999999999999
Q ss_pred cEEEEECCchh
Q 005254 643 LVNLWHDSTAA 653 (706)
Q Consensus 643 ~i~vw~~~~~~ 653 (706)
.|.||...++.
T Consensus 1374 ~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1374 TVSIYSCEKPR 1384 (1387)
T ss_pred eEEEeecCCcC
Confidence 99999887654
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5.5e-18 Score=148.72 Aligned_cols=196 Identities=17% Similarity=0.220 Sum_probs=157.5
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
..++|+.+|. .+++++.||++++|+.+... .......|...|.++.|+|||++|++-+.| ..+||+..
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~----------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSML----------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcch----------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec
Confidence 7889999987 89999999999999977543 344456788999999999999999999999 89999999
Q ss_pred CccEEEEEee--cCCcEEEEEEccCC-----CEEEEecCCCcEEEEEcCCCce-----EEEEeecccCEEEEEEEeCCCE
Q 005254 525 DLVSVVTFRG--HKRGIWSVEFSPVD-----QVVITASGDKTIKIWSISDGSC-----LKTFEGHTSSVLRASFLTRGAQ 592 (706)
Q Consensus 525 ~~~~~~~~~~--~~~~v~~~~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~i~~~~~s~~~~~ 592 (706)
++..+..... .+.....+.|+.|+ ..++....-+.|+.||+..... .++.......|.+++.++||++
T Consensus 216 ~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 216 TGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF 295 (398)
T ss_pred cCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence 9966665542 23345677888776 3344445566788877653322 1112223458999999999999
Q ss_pred EEEEeCCCCEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 593 IVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
++.|+.||.|.|++..+-+.+...+ .|...|+.+.|+||.+++++.+.|....+-.+.-.
T Consensus 296 ~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 9999999999999999998887776 89999999999999999999999999999888653
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.78 E-value=2e-17 Score=149.44 Aligned_cols=224 Identities=15% Similarity=0.200 Sum_probs=169.6
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCCceEEEEE----eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccc
Q 005254 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVG----TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN 483 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 483 (706)
+.+-. +..|-.-|.+.+.|....+..+.+ ......++++.|-|.+...++++-.+|.+++||.......
T Consensus 183 ~~g~d-llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~------ 255 (636)
T KOG2394|consen 183 PKGLD-LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA------ 255 (636)
T ss_pred CCCcc-eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC------
Confidence 34444 778888899998887653222211 1234789999999988889999999999999987422100
Q ss_pred cceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEE
Q 005254 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW 563 (706)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 563 (706)
.-.+-...+++..++....-+ -.+..++..+.--.+.|...+|+|||++||+.+.||.+||+
T Consensus 256 ------------t~p~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF 317 (636)
T KOG2394|consen 256 ------------TAPSYQALKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIF 317 (636)
T ss_pred ------------CCCcccccCCCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEe
Confidence 001112223555554432211 11224444555456689999999999999999999999999
Q ss_pred EcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcC-------------
Q 005254 564 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK------------- 630 (706)
Q Consensus 564 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~------------- 630 (706)
|..+.+++..++..-+...|++|||||+||++|++|-.|.||.+..++.++.-++|.+.|+.++|.|
T Consensus 318 ~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~ 397 (636)
T KOG2394|consen 318 DFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSG 397 (636)
T ss_pred eccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccccccccccc
Confidence 9999998888887778999999999999999999999999999999999999999999999999982
Q ss_pred ----------------------CC-------------CEEEEEeCCCcEEEEECCchhHHH
Q 005254 631 ----------------------KT-------------EMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 631 ----------------------~~-------------~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
++ -.+.+.+.|..+++||+.......
T Consensus 398 ~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 398 MDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 01 146788999999999998777655
No 212
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=1.8e-15 Score=143.82 Aligned_cols=244 Identities=13% Similarity=0.199 Sum_probs=155.1
Q ss_pred eeEeeEeCCCCcEEEE-EecCCcEEEEeCCC-cee--eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC-
Q 005254 356 ILDLKFLGEEEQYLAV-ATNIEQVQVYDLSS-MSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES- 430 (706)
Q Consensus 356 v~~~~~~~~~~~~l~~-~~~~~~i~~~d~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~- 430 (706)
...+.+.| ++++|++ +..++.|.+|++.. +.. ..... .......+. ++|+++.++++...++.+.+|++.+
T Consensus 37 ~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~--~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 37 VQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS--TDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE--ECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 34455555 4444444 34567888888763 322 11221 122334455 8899998666666789999999864
Q ss_pred ce---EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCC
Q 005254 431 RC---CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 507 (706)
Q Consensus 431 ~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 507 (706)
+. .+.... +......++++|+++.++++...++.|.+||+.......... ..............++|+|+|+
T Consensus 113 g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~----~~~~~~~~g~~p~~~~~~pdg~ 187 (330)
T PRK11028 113 GIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE----PAEVTTVEGAGPRHMVFHPNQQ 187 (330)
T ss_pred CCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC----CCceecCCCCCCceEEECCCCC
Confidence 22 222222 234567789999998666777788999999997532110000 0000111234467899999999
Q ss_pred EEEEeeC-CCcEEEEeCCC--c--cEEEEEeecC------CcEEEEEEccCCCEEEEecC-CCcEEEEEcCCCceEEEEe
Q 005254 508 LVCTGSQ-DRTACVWRLPD--L--VSVVTFRGHK------RGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCLKTFE 575 (706)
Q Consensus 508 ~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~ 575 (706)
+++++.. ++.|.+|++.. + +.+..+..+. .....+.++|++++|+++.. ++.|.+|++.......++.
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~ 267 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE 267 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence 9988876 89999999973 2 2333332211 12346889999999998854 7899999996543222222
Q ss_pred ecc---cCEEEEEEEeCCCEEEEEeC-CCCEEEEECC
Q 005254 576 GHT---SSVLRASFLTRGAQIVSCGA-DGLVKLWTVR 608 (706)
Q Consensus 576 ~~~---~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~ 608 (706)
++. .....+.|+|||++|+++.. +++|.+|++.
T Consensus 268 ~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 268 GHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 221 24557899999999998775 8899999874
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=3e-15 Score=126.57 Aligned_cols=277 Identities=19% Similarity=0.257 Sum_probs=188.2
Q ss_pred EeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC------CcEEEEeCCCc
Q 005254 358 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD------NSVRLWDSESR 431 (706)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~ 431 (706)
+++|.. +..-++++.. ...++|+.+..+.....+.+.+.+.-+. ..-..+.+.++|+.+ ..+.|||-...
T Consensus 10 svs~NQ-D~ScFava~~-~Gfriyn~~P~ke~~~r~~~~~G~~~ve--MLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 10 SVSFNQ-DHSCFAVATD-TGFRIYNCDPFKESASRQFIDGGFKIVE--MLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred EEEEcc-CCceEEEEec-CceEEEecCchhhhhhhccccCchhhhh--HhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 355543 5566677666 4588898887554333333333332222 122334444555443 46999997777
Q ss_pred eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe--ecCcceEEEEEcCCCCEE
Q 005254 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLAVAPNDSLV 509 (706)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l 509 (706)
+++.++. ...+|.++.+.++ .+++. .++.|.+|.+..... ....+. .......+++-..+..+|
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k---------~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPK---------LLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChh---------heeeeecccCCCceEeecCCCCceEE
Confidence 7777765 5689999999988 34444 456899999875321 222221 222333344433344555
Q ss_pred EE-eeCCCcEEEEeCCCccE--EEEEeecCCcEEEEEEccCCCEEEEecCCCc-EEEEEcCCCceEEEEee--cccCEEE
Q 005254 510 CT-GSQDRTACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDKT-IKIWSISDGSCLKTFEG--HTSSVLR 583 (706)
Q Consensus 510 ~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~--~~~~i~~ 583 (706)
|. |-.-|.|+|-|+...+. ...+.+|...|.+++.+-+|..+|+++..|+ |||||..+|+.+.+++. ....|.+
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC 231 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence 54 44568999999986655 5778899999999999999999999999997 89999999999999874 3357999
Q ss_pred EEEEeCCCEEEEEeCCCCEEEEECCCCe---E---------------------EEEeccCCCcEEEEEEcCCCCEEEEEe
Q 005254 584 ASFLTRGAQIVSCGADGLVKLWTVRTGE---C---------------------IATYDKHEDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 584 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~---------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~ 639 (706)
++|||+..+|+++++.|+++||.+.... . +..++-..+...-++|-.+.+-++..+
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~ 311 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAIC 311 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEE
Confidence 9999999999999999999999886422 1 111222344555677877756677778
Q ss_pred CCCcEEEEECCch
Q 005254 640 SDALVNLWHDSTA 652 (706)
Q Consensus 640 ~dg~i~vw~~~~~ 652 (706)
.||+..-+.+...
T Consensus 312 ~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 312 ADGSYYKFKFDPK 324 (346)
T ss_pred eCCcEEEEEeccc
Confidence 8898776655443
No 214
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.2e-18 Score=151.26 Aligned_cols=300 Identities=22% Similarity=0.269 Sum_probs=229.8
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee-eCCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
.....+..|.+.+..+.|.. .+..+++++.+..+.+||...+.....+ .+|...+....+........ +++++.||.
T Consensus 133 ~l~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~t-i~~~s~dgq 210 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRT-IVTSSRDGQ 210 (559)
T ss_pred hhhhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcC-ceeccccCc
Confidence 34567778999999999976 7889999999999999999988776655 46877777766444455556 899999999
Q ss_pred EEEEeCCCce-E--EEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCc---c
Q 005254 423 VRLWDSESRC-C--VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK---D 496 (706)
Q Consensus 423 i~i~d~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 496 (706)
+++-.+.... + ...+..|.++|..++.-|+...-+.+++.|+.+.-+|++...... .......+.. .
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~-------~~~cr~~~~~~~v~ 283 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE-------KFVCREADEKERVG 283 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc-------eeeeeccCCcccee
Confidence 9987654332 2 234567999999999999999899999999999999988653211 1112222333 5
Q ss_pred eEEEEEcCCC-CEEEEeeCCCcEEEEeCCCccE------EEEEe------ecCCcEEEEEEccCCCEEEEecCCCcEEEE
Q 005254 497 INSLAVAPND-SLVCTGSQDRTACVWRLPDLVS------VVTFR------GHKRGIWSVEFSPVDQVVITASGDKTIKIW 563 (706)
Q Consensus 497 i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~------~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 563 (706)
...++..|.. ..+++++.|..+++||.+.-.. +..+- ...-.|++++|+.++.-|+++..|-.|+++
T Consensus 284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 284 LYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF 363 (559)
T ss_pred eeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence 6788888855 4899999999999999764322 12222 223468999999887777777788889999
Q ss_pred EcCC--C----------ceEE-EEeeccc--CEEEEEE-EeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEE
Q 005254 564 SISD--G----------SCLK-TFEGHTS--SVLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 627 (706)
Q Consensus 564 d~~~--~----------~~~~-~~~~~~~--~i~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 627 (706)
.-.- | .... .+++|.. .|..+-| -|...|+++|+.-|.|.||+-.+++.+..+.+....|+||.
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLE 443 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLE 443 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccC
Confidence 5322 2 1222 3777865 4666654 57788999999999999999999999999988777999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCch
Q 005254 628 VGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 628 ~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
-+|--..||+.|.|..|+||...+.
T Consensus 444 pHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 444 PHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred CCCCCchhhccCCccceeeecCCcc
Confidence 9999999999999999999987443
No 215
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.77 E-value=2.5e-15 Score=135.42 Aligned_cols=352 Identities=14% Similarity=0.201 Sum_probs=226.5
Q ss_pred ccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc---------------CeEEE
Q 005254 22 GGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS---------------REIRV 86 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d---------------~~i~i 86 (706)
...+.+||.|++|++.....|.+|+-+....+..+. | ..|..+.|||+++||.+=+.. +.+.+
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~v 112 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFV 112 (561)
T ss_pred hhheeecCcchheehhhccceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeE
Confidence 447899999999999999999999988776555554 3 568999999999999985432 35999
Q ss_pred EECCCCeEEEEeeccCCC--eE-EEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCC-CCcEEEEEEcCCCCceEEE
Q 005254 87 WDLSTLKCLRSWKGHDGP--AI-GMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH-KGVVSSILFHPDTDKSLLF 162 (706)
Q Consensus 87 wd~~~~~~~~~~~~~~~~--v~-~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~ 162 (706)
||..+|..+..+.....+ .. -+.|+-+.+|+|-. ....++|+++...-....+..- ...|...+|+|.+++..++
T Consensus 113 wd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la 191 (561)
T COG5354 113 WDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELA 191 (561)
T ss_pred EeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEE
Confidence 999999999999886665 44 68899999988766 3467999997322212222221 3568888999986654433
Q ss_pred E-----EecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEe
Q 005254 163 S-----GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCA 237 (706)
Q Consensus 163 ~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 237 (706)
. .+..+++++|.+..++.+.+-.--...=..+.|.+.|++|++-....
T Consensus 192 ~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~--------------------------- 244 (561)
T COG5354 192 YWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH--------------------------- 244 (561)
T ss_pred EEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEe---------------------------
Confidence 3 34456666666654444433222222223344444444443321100
Q ss_pred eCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCC
Q 005254 238 IPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQ 317 (706)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T Consensus 245 -------------------------------------------------------------------------------- 244 (561)
T COG5354 245 -------------------------------------------------------------------------------- 244 (561)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcc
Q 005254 318 GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397 (706)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 397 (706)
T Consensus 245 -------------------------------------------------------------------------------- 244 (561)
T COG5354 245 -------------------------------------------------------------------------------- 244 (561)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEE-ecCCCeEEEEEecCCCC
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS-GSSDHTIKVWSFDGLSD 476 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~i~~~~~~~~ 476 (706)
+.. ++.++ ....++++++.... +.......++|...+|.|.++.+.+. |-.+..+.++|++..
T Consensus 245 --------~ks-nKsyf----gesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-- 308 (561)
T COG5354 245 --------TKS-NKSYF----GESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-- 308 (561)
T ss_pred --------eec-cccee----ccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc--
Confidence 000 00000 01223333333211 12222456889999999988766444 467888889988753
Q ss_pred CCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC---CcEEEEeCCCccEEE-EEeecCCcEEEEEEccCCCEEE
Q 005254 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVV-TFRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~ 552 (706)
.........=..+.|+|.++++++++-| |.+-+||........ .+.+.+ ..-+.|+||++++.
T Consensus 309 -----------l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~ 375 (561)
T COG5354 309 -----------LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYD 375 (561)
T ss_pred -----------eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEE
Confidence 2233344445678899999999987765 679999987665544 565543 34578999999988
Q ss_pred EecC------CCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC
Q 005254 553 TASG------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 600 (706)
Q Consensus 553 ~~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 600 (706)
+... |..|.|||+...... ..+.+.|.|.|++.-+.+.+.
T Consensus 376 ~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 376 TDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 7643 778999998543322 445677777777766655543
No 216
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2e-17 Score=145.28 Aligned_cols=194 Identities=20% Similarity=0.184 Sum_probs=156.0
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec-
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG- 100 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~- 100 (706)
.+++|+.||..|++++.+ .++||+.++...+.....|.+.|.+|.|||||++|++.+.| ..+||+..+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 379999999999999766 99999988888888888899999999999999999999999 899999999977776653
Q ss_pred -cCCCeEEEEECCCC---CEE--EEecCCCcEEEEECCCCe-----EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCe
Q 005254 101 -HDGPAIGMACHPSG---GLL--ATAGADRKVLVWDVDGGF-----CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (706)
Q Consensus 101 -~~~~v~~~~~s~~~---~~l--~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 169 (706)
.+.....+.|+.|+ .+. +.....+.|..|++...+ ...........|++++.+++|+. ++.|+.||.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf--~AlGT~dGs 304 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF--LALGTMDGS 304 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE--EEEeccCCc
Confidence 34566778898887 332 333344566666653221 11222234567999999999886 999999999
Q ss_pred EEEEECCCCeeEEEe-ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 170 VRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 170 i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
|.+++..+.+.++.. +.|..-|+.+.|+|+.+++++.+.+....+..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999988887765 56999999999999999999999999888877653
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=6.4e-18 Score=149.70 Aligned_cols=198 Identities=19% Similarity=0.275 Sum_probs=175.6
Q ss_pred eEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCC
Q 005254 25 LVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG 103 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 103 (706)
+-++.+|+.|+.++.. .+..+|..++++...+.. ...|..+.|-.+.+++|++- ...++||| ..|..++.++.| .
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~-~ 210 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRH-I 210 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhc-C
Confidence 8899999999988775 899999999998877763 56789999999999999885 44899999 567778888866 7
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEE
Q 005254 104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 183 (706)
.|..+.|-|..-+|++++..|.+..-|+.+|+.+..+....+.+..++-+|-.. ++-.|...|+|.+|.....+++..
T Consensus 211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLWSPNSKEPLVK 288 (545)
T ss_pred chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc--eEEEcCCCceEEecCCCCcchHHH
Confidence 899999999999999999999999999999999999998899999999998543 477889999999999999999988
Q ss_pred eecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 184 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 184 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
+..|.++|.++++.++|+++++.+.|..++|||++....+.++..
T Consensus 289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 889999999999999999999999999999999998776555544
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=4.6e-16 Score=152.19 Aligned_cols=238 Identities=16% Similarity=0.188 Sum_probs=165.6
Q ss_pred CCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC--CcEEEEeCCCceEEEEEeCCCcCeEEEEEecC
Q 005254 375 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 452 (706)
Q Consensus 375 ~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (706)
+..+.+||..... ...+..+...+.... ++|+++.++.+...+ ..|++||+.+++.... ....+....++|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~--wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPA--WSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccce--EcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCC
Confidence 3689999987655 345666777777777 899999844443332 4699999988754332 222233457899999
Q ss_pred CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CCCcEEEEeCCCc-cEEE
Q 005254 453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDL-VSVV 530 (706)
Q Consensus 453 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~-~~~~ 530 (706)
|+.++++.+.+|.+.+|.++.... ....+..+...+....|+|||+.|+..+ .+|...||++... ....
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGG---------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCC---------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 985555556788777775542211 2223344556678899999999877655 5778888876432 2222
Q ss_pred EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEEC--C
Q 005254 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV--R 608 (706)
Q Consensus 531 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~--~ 608 (706)
.+ .+.. ....|+|||++|+..+.++ +.+||+.+++.......+ ....+.|+|||++|+.++.++...+|++ .
T Consensus 330 ~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~ 403 (429)
T PRK01742 330 LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA 403 (429)
T ss_pred Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 22 3433 4578999999998887765 667999888764332222 2356789999999999999998888875 3
Q ss_pred CCeEEEEeccCCCcEEEEEEcCC
Q 005254 609 TGECIATYDKHEDKIWALAVGKK 631 (706)
Q Consensus 609 ~~~~~~~~~~~~~~v~~~~~s~~ 631 (706)
+|+.+..+..|.+.+...+|+|-
T Consensus 404 ~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 404 DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCceEEccCCCCCCCCcccCCC
Confidence 68888889888888999999984
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.7e-15 Score=128.93 Aligned_cols=302 Identities=21% Similarity=0.239 Sum_probs=186.5
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecC-CCccEEEEEEccCC-CEEEEEeccCeEEEEECCCC----eE--
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEG-GSDTITALALSPDD-KLLFSSGHSREIRVWDLSTL----KC-- 94 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~-~~~~i~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~----~~-- 94 (706)
-+++++.-.-+|++..+ .|++||-.+ .....++. ....|+|++|-|.+ +-|++|... -|.||..... +.
T Consensus 103 ~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~ 180 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIR 180 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccc
Confidence 37787755555555554 899999766 44444543 35689999999976 566666655 5999987531 11
Q ss_pred --------EEEeeccCCCeEEEEECCCCCEEEEec-CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe
Q 005254 95 --------LRSWKGHDGPAIGMACHPSGGLLATAG-ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 95 --------~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 165 (706)
+..-++| .+|++|.|.+||..+++++ .|..|.|||++++..+.......+.+.-+.||||++. ++++.
T Consensus 181 ~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~--lfaAt 257 (445)
T KOG2139|consen 181 MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV--LFAAT 257 (445)
T ss_pred cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE--EEEec
Confidence 1122344 7899999999999999987 4678999999999877666556788999999999987 99999
Q ss_pred cCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcc
Q 005254 166 DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD 245 (706)
Q Consensus 166 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (706)
-|+..++|+...........--.+.|...+|+|+|++|+.+.. |.=++|.+.-.+.............+
T Consensus 258 ~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~---------- 326 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRV---------- 326 (445)
T ss_pred ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceee----------
Confidence 9999999964433222222233458999999999998776653 33445544321111111000000111
Q ss_pred cccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeC
Q 005254 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (706)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (706)
+-+-|+.. ........--.++..++++.|.|.++++....
T Consensus 327 ------------------------------lliaDL~e----------~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 327 ------------------------------LLIADLQE----------VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred ------------------------------eeeccchh----------hhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 11111100 00000111224567888999999999988776
Q ss_pred Cc--------eEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeC
Q 005254 326 QQ--------LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383 (706)
Q Consensus 326 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~ 383 (706)
+. +..|+....+ ..+...-....+......+..+...++.+|.++=+.|.+.-|++
T Consensus 367 ~~~v~~~k~~i~~fdtr~sp--~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 367 QSFVLLCKLHISRFDTRKSP--PVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CchhhhhhhhhhhhcccccC--ceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 55 3344443322 12222223333333444444445567777777777787777765
No 220
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=7.8e-16 Score=130.02 Aligned_cols=196 Identities=21% Similarity=0.232 Sum_probs=161.9
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCe---EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEEC-CCC--eEEE
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNAS---IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL-STL--KCLR 96 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~---~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~-~~~--~~~~ 96 (706)
|.|+++|++.+|.+..+ .|.||...... ..++++.|...|+++.|+|..+.|++++.|..-++|.. +.+ ++..
T Consensus 15 chAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl 94 (361)
T KOG1523|consen 15 CHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL 94 (361)
T ss_pred eeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce
Confidence 49999999999999888 89999876554 66899999999999999999999999999999999998 433 3555
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE----EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT----HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
.+..++...+++.|+|.++.+|+|+..+.|.||=.+...-- +.-+.+...|.++.|+|+.- ++++|+.|+..++
T Consensus 95 vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV--LlaaGs~D~k~rV 172 (361)
T KOG1523|consen 95 VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV--LLAAGSTDGKCRV 172 (361)
T ss_pred eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc--eecccccCcceeE
Confidence 56668899999999999999999999999999988654321 22345788899999999654 5999999999999
Q ss_pred EEC-----CC-------------CeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCc
Q 005254 173 WDL-----LA-------------KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS 221 (706)
Q Consensus 173 wd~-----~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 221 (706)
+.. ++ |+++..+....+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 173 fSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 173 FSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred EEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 864 11 12233333456889999999999999999999999999987664
No 221
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.74 E-value=2.5e-14 Score=129.05 Aligned_cols=153 Identities=17% Similarity=0.269 Sum_probs=108.4
Q ss_pred CCeEE-EEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEE
Q 005254 39 GESIN-IVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL 117 (706)
Q Consensus 39 ~~~i~-i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 117 (706)
+..|. .|+.++...-..+.....++..+.+||.|.+|++.... .|.+|+-..+..+..+. | ..|..+.|||.++||
T Consensus 10 s~~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL 86 (561)
T COG5354 10 SAVISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYL 86 (561)
T ss_pred cceEEEeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCccccee
Confidence 33444 45555555545555467799999999999999987666 59999998888777666 4 678999999999999
Q ss_pred EEecC---------------CCcEEEEECCCCeEEEEeeCCCCc--EE-EEEEcCCCCceEEEEEecCCeEEEEECCCCe
Q 005254 118 ATAGA---------------DRKVLVWDVDGGFCTHYFKGHKGV--VS-SILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (706)
Q Consensus 118 ~~~~~---------------d~~i~vw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 179 (706)
.+-+. +..+.+||..+|..+..+.....+ .+ -+.|+.+... ++-- ....++|+++ ++.
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y--~ARv-v~~sl~i~e~-t~n 162 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKY--VARV-VGSSLYIHEI-TDN 162 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchh--hhhh-ccCeEEEEec-CCc
Confidence 99653 235999999999999998877666 55 7788887664 3222 3345888986 333
Q ss_pred eE----EEeecccceEEEEEEecCC
Q 005254 180 CV----ATLDKHFSRVTSMAITSDG 200 (706)
Q Consensus 180 ~~----~~~~~~~~~v~~~~~~~~~ 200 (706)
.. +.++ ...+....|+|.+
T Consensus 163 ~~~~p~~~lr--~~gi~dFsisP~~ 185 (561)
T COG5354 163 IEEHPFKNLR--PVGILDFSISPEG 185 (561)
T ss_pred cccCchhhcc--ccceeeEEecCCC
Confidence 21 1111 2456666677765
No 222
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=4.5e-15 Score=123.59 Aligned_cols=240 Identities=15% Similarity=0.220 Sum_probs=175.5
Q ss_pred CCcceEEEeeeeeecCCC----EEEEEeeCCCcEEEEeCCCc--eEE--E-----EEeCCCcCeEEEEEecCCCeEEEEe
Q 005254 394 GHSEIVLCLDTCALSSGK----ILIVTGSKDNSVRLWDSESR--CCV--G-----VGTGHMGAVGAVAFSKKLQNFLVSG 460 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~--~~~--~-----~~~~~~~~v~~~~~~~~~~~~l~~~ 460 (706)
.|.-+++.+. +.|+.. .+|++. +..+|+|.+... +.. . .-..+..++++..|+.-..+++.+.
T Consensus 94 d~~YP~tK~~--wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS 169 (364)
T KOG0290|consen 94 DHPYPVTKLM--WIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS 169 (364)
T ss_pred CCCCCccceE--ecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEee
Confidence 4556677666 444432 335544 457999987732 111 1 1234567899999998888899999
Q ss_pred cCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCccEEEEEe---ecC
Q 005254 461 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSVVTFR---GHK 536 (706)
Q Consensus 461 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~ 536 (706)
+-|-+..+||++.+. .......+.+|.++|..++|...+ +.+|+.+.||.+++||++..+.-..+. ...
T Consensus 170 SiDTTCTiWdie~~~-------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~ 242 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGV-------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS 242 (364)
T ss_pred cccCeEEEEEEeecc-------ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC
Confidence 999999999998752 112466788999999999999865 588999999999999998765433332 235
Q ss_pred CcEEEEEEccC-CCEEEEecCC-CcEEEEEcCCC-ceEEEEeecccCEEEEEEEeC-CCEEEEEeCCCCEEEEECCCCe-
Q 005254 537 RGIWSVEFSPV-DQVVITASGD-KTIKIWSISDG-SCLKTFEGHTSSVLRASFLTR-GAQIVSCGADGLVKLWTVRTGE- 611 (706)
Q Consensus 537 ~~v~~~~~s~~-~~~l~~~~~d-g~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~- 611 (706)
.+...++|+++ -+++|+-..| ..|.|.|++.. ..+..+++|.+.|+.++|.|. ...|.+++.|..+.+||+...-
T Consensus 243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred CcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 67888999885 4567765554 46999999865 568899999999999999995 4589999999999999997532
Q ss_pred -----EEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCcEEE
Q 005254 612 -----CIATYDKHEDKIWALAVGKK-TEMFATGGSDALVNL 646 (706)
Q Consensus 612 -----~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v 646 (706)
++..+. -.+.|+.+.|++. +.+++.+. ++.+.+
T Consensus 323 ~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 323 ENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred cCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 233333 4678999999964 56777665 444444
No 223
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=4.6e-16 Score=152.19 Aligned_cols=211 Identities=14% Similarity=0.095 Sum_probs=147.6
Q ss_pred CCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecC---CCeEEEEEecCCCCCCCcccccceeEEEeecCcc
Q 005254 420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496 (706)
Q Consensus 420 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (706)
+..|.+||..... ...+..+...+...+|+|+|+. |+..+. +..|++||+..+. ...+......
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~-----------~~~l~~~~g~ 249 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGA-----------RKVVASFRGH 249 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCc-----------eEEEecCCCc
Confidence 4689999987654 4456667788999999999984 454443 2479999987642 1111222223
Q ss_pred eEEEEEcCCCCEEEEee-CCCcEEEE--eCCCccEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcCCC-ceE
Q 005254 497 INSLAVAPNDSLVCTGS-QDRTACVW--RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDG-SCL 571 (706)
Q Consensus 497 i~~~~~s~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~-~~~ 571 (706)
...++|+|||+.|+.+. .+|.+.|| |+.++. ...+..+...+....|+|||+.|+.++ .+|...||++... ...
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 45689999999888764 67765555 665554 345556777788999999999877554 5788888876532 222
Q ss_pred EEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 572 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 572 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
..+ .+.. ....|+|||++|+..+.++ +.+||+.+++.......+ ....+.|+|||++|+.++.+|...+|.+.
T Consensus 329 ~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 329 SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 223 3433 4578999999998887765 666999988765333222 23567899999999999999999888764
No 224
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.72 E-value=4.7e-13 Score=132.00 Aligned_cols=154 Identities=22% Similarity=0.362 Sum_probs=127.5
Q ss_pred eeeccceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEE-
Q 005254 19 FYGGGPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR- 96 (706)
Q Consensus 19 ~~~~~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~- 96 (706)
.|..--+.++++.-+++++.-- .|.+|++.-.+.-..+.||.+.|.++.++.||.++++.++|..+++|++++++...
T Consensus 133 l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 133 LYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc
Confidence 3443345677888788877664 89999987444334689999999999999999999999999999999999998776
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCC-cEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG-VVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
..-+|+..|..+.|.|+ ++++++.|-+.++|+.. ++.+..+.+|.. .|..++..++.. ..++++.|+.+++|++
T Consensus 213 ~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~--~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 213 TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVI--IKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCce--EEEeeccCcchhhhhh
Confidence 66679999999999999 89999999999999875 444557777754 588899887544 5999999999999998
Q ss_pred CC
Q 005254 176 LA 177 (706)
Q Consensus 176 ~~ 177 (706)
..
T Consensus 288 ~~ 289 (967)
T KOG0974|consen 288 NG 289 (967)
T ss_pred hc
Confidence 54
No 225
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.72 E-value=1.1e-11 Score=111.28 Aligned_cols=556 Identities=14% Similarity=0.146 Sum_probs=295.1
Q ss_pred EEcCC--CCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEE-------eccCeEEEEECCCCeEEE
Q 005254 26 VVSSD--GSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-------GHSREIRVWDLSTLKCLR 96 (706)
Q Consensus 26 ~~s~d--g~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~-------~~d~~i~iwd~~~~~~~~ 96 (706)
-+.|| |..+.+.+.+.+..+++.+++.++ +..|-+-|+.-.|+|||+.+|.. ...+.+.+.+.++|+..+
T Consensus 43 ~l~PDI~GD~IiFt~~DdlWe~slk~g~~~r-itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kR 121 (668)
T COG4946 43 YLNPDIYGDRIIFTCCDDLWEYSLKDGKPLR-ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKR 121 (668)
T ss_pred hcCCcccCcEEEEEechHHHHhhhccCCeeE-EecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEE
Confidence 34564 788888888889999999998865 55577889999999999998862 234568888889988655
Q ss_pred EeeccCCCeEE-EEECCCCCEEEEecCCCcE----EEEECCC-CeEEEEeeCCCCcEEEEEEcCCCCceEEEEE------
Q 005254 97 SWKGHDGPAIG-MACHPSGGLLATAGADRKV----LVWDVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSG------ 164 (706)
Q Consensus 97 ~~~~~~~~v~~-~~~s~~~~~l~~~~~d~~i----~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~------ 164 (706)
.--- ....+. .-|+|||+.+++...-.-. .+|.+.. |-.... -.-++.+.+.+- || . ++.|
T Consensus 122 iTyf-Gr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~--LnlGpathiv~~-dg-~--ivigRntydL 194 (668)
T COG4946 122 ITYF-GRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEP--LNLGPATHIVIK-DG-I--IVIGRNTYDL 194 (668)
T ss_pred EEEe-ccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeee--ccCCceeeEEEe-CC-E--EEEccCcccC
Confidence 3221 233333 4599999988886532211 2233221 110111 123344444442 22 1 2222
Q ss_pred --------ecCCeEEEEEC-CCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEE--eCCCCcceeeecCcceee
Q 005254 165 --------SDDATVRVWDL-LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW--DLRDYSCKLTVPTYEMVE 233 (706)
Q Consensus 165 --------~~dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w--~~~~~~~~~~~~~~~~~~ 233 (706)
+..| .+|-- ..++....+-.-.+.|.+--+.. ++..+....+|.=.+| |++... ++.......-.
T Consensus 195 P~WK~YkGGtrG--klWis~d~g~tFeK~vdl~~~vS~PmIV~-~RvYFlsD~eG~GnlYSvdldGkD-lrrHTnFtdYY 270 (668)
T COG4946 195 PHWKGYKGGTRG--KLWISSDGGKTFEKFVDLDGNVSSPMIVG-ERVYFLSDHEGVGNLYSVDLDGKD-LRRHTNFTDYY 270 (668)
T ss_pred cccccccCCccc--eEEEEecCCcceeeeeecCCCcCCceEEc-ceEEEEecccCccceEEeccCCch-hhhcCCchhcc
Confidence 2222 23422 22222222222222233322221 2222333344433333 333222 22211111111
Q ss_pred eEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccC-ccccccccCCCccceeEEE-
Q 005254 234 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS-DVTISFEMDDSKRGFTAAT- 311 (706)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 311 (706)
.-....+| .-+.-...|.|.++|.++..+....-. +............+..-+.
T Consensus 271 ~R~~nsDG------------------------krIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyled 326 (668)
T COG4946 271 PRNANSDG------------------------KRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLED 326 (668)
T ss_pred ccccCCCC------------------------cEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhh
Confidence 11222222 345556778899999888744322111 1110001111111111111
Q ss_pred EccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCC-cEEEEeCCCceeeE
Q 005254 312 VLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE-QVQVYDLSSMSCSY 390 (706)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-~i~~~d~~~~~~~~ 390 (706)
+++....+++.-+.|...+.+..... ....++.+.|.-..+.. +.+-++.++.+| .+.++|..+++..
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~~~~---------~iqv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~k- 395 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPWDGY---------SIQVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVK- 395 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCCCCe---------eEEcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEE-
Confidence 33444445555555665555444332 11223344444444444 444788888888 8999999988755
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC----eE
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH----TI 466 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~i 466 (706)
.+...-+.|.++. .+++++. ++++.....+.+.|+.++.....-+...+-|+..+|+|+++ +++-+-.+| .|
T Consensus 396 r~e~~lg~I~av~--vs~dGK~-~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~I 471 (668)
T COG4946 396 RIEKDLGNIEAVK--VSPDGKK-VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSI 471 (668)
T ss_pred EeeCCccceEEEE--EcCCCcE-EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce-eEEEecCcceeeeeE
Confidence 4555667788887 8888888 88888889999999999988877777888999999999987 777776654 68
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEE--EeecCCcEEEEE-
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT--FRGHKRGIWSVE- 543 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~- 543 (706)
+++|+...+ ..........=.+-+|.||+++|..-+.. -.|......+.. +..+..+-..+-
T Consensus 472 klydm~~~K-----------iy~vTT~ta~DfsPaFD~d~ryLYfLs~R----sLdPs~Drv~fnf~f~~vskPylv~L~ 536 (668)
T COG4946 472 KLYDMDGGK-----------IYDVTTPTAYDFSPAFDPDGRYLYFLSAR----SLDPSNDRVIFNFSFQRVSKPYLVVLG 536 (668)
T ss_pred EEEecCCCe-----------EEEecCCcccccCcccCCCCcEEEEEecc----ccCCCCCeeEEEEEEeeeccceEEEec
Confidence 899988753 11122222223456888999988765532 112222221111 111222211110
Q ss_pred ---EccCCCEEE-EecCCCcEEEEEcCC---------CceEEEEee-cccCEEEEEEEeCCC---EEEEEeCCCCEEEEE
Q 005254 544 ---FSPVDQVVI-TASGDKTIKIWSISD---------GSCLKTFEG-HTSSVLRASFLTRGA---QIVSCGADGLVKLWT 606 (706)
Q Consensus 544 ---~s~~~~~l~-~~~~dg~i~iwd~~~---------~~~~~~~~~-~~~~i~~~~~s~~~~---~l~~~~~dg~i~iwd 606 (706)
.||-.+..- .-+.+|.+-+=+++. +.- ..+.+ ..+.|.-...--.|. ++-.+-.-|.+.+||
T Consensus 537 ~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY-~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~yd 615 (668)
T COG4946 537 RGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDY-RSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYD 615 (668)
T ss_pred CCCCChhhcCchhcCccccceehhhhcccccccccCccce-eEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEe
Confidence 122111110 112233332222211 111 11111 112232222211222 222234567888888
Q ss_pred CCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 607 VRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 607 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+++.+.- .-...+.++..|+|++.++. -.||.+++++++...
T Consensus 616 letkk~~----e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~vekkP 657 (668)
T COG4946 616 LETKKVE----EYKDNVSSFRLSSDGSKILV-KLDGKLRLFDVEKKP 657 (668)
T ss_pred cchhhHH----HHhcccceEEEcCCCCEEEE-EeCCeEEEEecccCc
Confidence 8765432 22467899999999999887 789999999998733
No 226
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=4.2e-15 Score=148.29 Aligned_cols=294 Identities=17% Similarity=0.275 Sum_probs=204.3
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc-------eeeEeeeCCcceEEEeeeeeecCCCEEEEE
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-------SCSYVLAGHSEIVLCLDTCALSSGKILIVT 416 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 416 (706)
.....+..|...+..++.++++..++++++.||+|++|+.... +....+......+.++. ....+.. +|.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt--~~~~~~~-~Av 1115 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVT--MCGNGDQ-FAV 1115 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEE--eccCCCe-EEE
Confidence 3445666788888899999989899999999999999998632 23334444566777887 4455666 889
Q ss_pred eeCCCcEEEEeCCCc--e-----EEEEEeC-CCcCeEE-EEEecCCCe-EEEEecCCCeEEEEEecCCCCCCCcccccce
Q 005254 417 GSKDNSVRLWDSESR--C-----CVGVGTG-HMGAVGA-VAFSKKLQN-FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA 486 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~--~-----~~~~~~~-~~~~v~~-~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 486 (706)
++.||.|++.++... + ..+.... ..+.+.. -++....+. .++.+...+.|..||....... .
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~--------w 1187 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA--------W 1187 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH--------H
Confidence 999999999987752 1 1111111 1223333 344433333 7888888999999998754211 1
Q ss_pred eEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe-ecCCcEEEEEEccCC---CEEEEe-c-CCCcE
Q 005254 487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVD---QVVITA-S-GDKTI 560 (706)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~---~~l~~~-~-~dg~i 560 (706)
........+.|++++.+|.+.++++|+..|.+.+||++-+.++.... ++..++..+..+|-. ...+++ + ..+.|
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 11223345679999999999999999999999999999888887765 355778888877643 344444 3 47789
Q ss_pred EEEEcCCCceEEEEeecc-------------------cCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEE--------
Q 005254 561 KIWSISDGSCLKTFEGHT-------------------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI-------- 613 (706)
Q Consensus 561 ~iwd~~~~~~~~~~~~~~-------------------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-------- 613 (706)
.+|++.+|.+...+.... -......+...+.++.+|+.|..|+.||....+..
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s 1347 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPS 1347 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcc
Confidence 999999997766665331 11223344444568999999999999998532211
Q ss_pred ----------------------------------------EEe--------ccCCCcEEEEEEcCCC-CEEEEEeCCCcE
Q 005254 614 ----------------------------------------ATY--------DKHEDKIWALAVGKKT-EMFATGGSDALV 644 (706)
Q Consensus 614 ----------------------------------------~~~--------~~~~~~v~~~~~s~~~-~~l~~~~~dg~i 644 (706)
... ..|.++|++|++-... .+|++++.||.|
T Consensus 1348 ~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~I 1427 (1431)
T KOG1240|consen 1348 TSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVI 1427 (1431)
T ss_pred ccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCee
Confidence 000 1377788888876544 588899999999
Q ss_pred EEEE
Q 005254 645 NLWH 648 (706)
Q Consensus 645 ~vw~ 648 (706)
.+|+
T Consensus 1428 kiWk 1431 (1431)
T KOG1240|consen 1428 KIWK 1431 (1431)
T ss_pred eecC
Confidence 9995
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=1.9e-17 Score=146.81 Aligned_cols=229 Identities=17% Similarity=0.209 Sum_probs=191.7
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCC
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 478 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 478 (706)
...++ +..++.. ++.|+..|.+..+|..+++....+. -...|..+.|-.+.+ +++..+...+++||-...
T Consensus 132 PY~~~--ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq--~~AVAQK~y~yvYD~~Gt---- 201 (545)
T KOG1272|consen 132 PYHLD--YTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQ--FFAVAQKKYVYVYDNNGT---- 201 (545)
T ss_pred Ceeee--ecCCccE-EEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchH--HHHhhhhceEEEecCCCc----
Confidence 34455 7777877 8889999999999999998887765 346788888887755 555667788999986543
Q ss_pred CcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCC
Q 005254 479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK 558 (706)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 558 (706)
....+. ....+..+.|-|.--+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|...|
T Consensus 202 -------ElHClk-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnG 273 (545)
T KOG1272|consen 202 -------ELHCLK-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNG 273 (545)
T ss_pred -------EEeehh-hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCc
Confidence 223232 235688899999999999999999999999999999999999899999999999999999999999
Q ss_pred cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 005254 559 TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG 638 (706)
Q Consensus 559 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 638 (706)
+|.+|...+.+++..+..|.++|.++++.++|+|++|.+.|..++|||++.-..+.++.. .-+...+++|..| ++++
T Consensus 274 tVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~ 350 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLAL 350 (545)
T ss_pred eEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceee
Confidence 999999999999988889999999999999999999999999999999999887777765 4567788888766 4445
Q ss_pred eCCCcEEEEE
Q 005254 639 GSDALVNLWH 648 (706)
Q Consensus 639 ~~dg~i~vw~ 648 (706)
+....+.+|.
T Consensus 351 ~~G~~v~iw~ 360 (545)
T KOG1272|consen 351 SYGDHVQIWK 360 (545)
T ss_pred ecCCeeeeeh
Confidence 5556799996
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=5.3e-16 Score=140.42 Aligned_cols=195 Identities=18% Similarity=0.222 Sum_probs=142.8
Q ss_pred CCCcEEEEEecCCcEEEEeCCCceeeEeee----CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC
Q 005254 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLA----GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG 439 (706)
Q Consensus 364 ~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 439 (706)
+++--+.++-..|.+.++|....+..+.+. -....++|+. +.|.+..+++++..+|.++++|...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ik--Wvpg~~~~Fl~a~~sGnlyly~~~~--------- 251 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIK--WVPGSDSLFLVAHASGNLYLYDKEI--------- 251 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEE--EEeCCCceEEEEEecCceEEeeccc---------
Confidence 355567788888999999987633322221 2346789998 6777777788899999999998621
Q ss_pred CCcCeEEEEE--ecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCc
Q 005254 440 HMGAVGAVAF--SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT 517 (706)
Q Consensus 440 ~~~~v~~~~~--~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 517 (706)
....+...+ .+++. .+... .|.-.... .+.....-....|...+|+|||++||+.+.||.
T Consensus 252 -~~~~t~p~~~~~k~~~-~f~i~-------t~ksk~~r---------NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf 313 (636)
T KOG2394|consen 252 -VCGATAPSYQALKDGD-QFAIL-------TSKSKKTR---------NPVARWHIGEGSINEFAFSPDGKYLATVSQDGF 313 (636)
T ss_pred -cccCCCCcccccCCCC-eeEEe-------eeeccccC---------CccceeEeccccccceeEcCCCceEEEEecCce
Confidence 111111111 12222 11111 11110000 022222223447899999999999999999999
Q ss_pred EEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 518 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 518 i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
++|||+.+.+++..++..-+...|++|||||++|++|++|.-|.||.+...+.+..-.+|.+.|..++|.
T Consensus 314 LRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 314 LRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 9999999999999999888999999999999999999999999999999999999999999999999998
No 229
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=4.8e-15 Score=125.32 Aligned_cols=236 Identities=15% Similarity=0.157 Sum_probs=182.5
Q ss_pred CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce---EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC---CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
.-..+|+|.+ +.++... ++++.....+.||.....+ ...++..|...|+.+.|+|... .|++++.|..-++|.
T Consensus 8 ~~~~pitchA--wn~drt~-iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 8 RLLEPITCHA--WNSDRTQ-IAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWT 83 (361)
T ss_pred eccCceeeee--ecCCCce-EEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccccc
Confidence 3456788887 7777777 8999999999999876654 6678889999999999999976 799999999999999
Q ss_pred ecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEE----EEeecCCcEEEEEEcc
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV----TFRGHKRGIWSVEFSP 546 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~v~~~~~s~ 546 (706)
...+. ..+....+..++...+++.|+|.++.+|+|+....|.||-++....-- .-+.+...|+++.|+|
T Consensus 84 ~~~~~-------~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp 156 (361)
T KOG1523|consen 84 QPSGG-------TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP 156 (361)
T ss_pred cCCCC-------eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC
Confidence 85432 444666777788999999999999999999999999999876543321 2234677899999999
Q ss_pred CCCEEEEecCCCcEEEEEcC------------------CCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 547 VDQVVITASGDKTIKIWSIS------------------DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 547 ~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
++-+|++|+.|+..+|+..- -|+++.++....+.+..+.|+|+|..|+-.+.|..+.+-|..
T Consensus 157 nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 157 NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 99999999999999998741 123344554566789999999999999999999999999987
Q ss_pred CCe-EEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 609 TGE-CIATYDKHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 609 ~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
... .+.......-+..++.|-.+. .++.++.|
T Consensus 237 ~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 237 GPSERVQSVATAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred CCchhccchhhccCCceeeEeecCC-ceeecCCC
Confidence 664 344443333566677665433 23334444
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=3.7e-15 Score=129.64 Aligned_cols=270 Identities=12% Similarity=0.143 Sum_probs=190.4
Q ss_pred ceeeEeeEeCCCCcEEEEEe-cCCcEEEEeCCCceeeEe------eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEE
Q 005254 354 EEILDLKFLGEEEQYLAVAT-NIEQVQVYDLSSMSCSYV------LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~-~~~~i~~~d~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~ 426 (706)
..+..++|..+++.-+..+. .+..+..+.......... ......+|..+. ..+.. |++|-.+|.+.+|
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~----~~dg~-Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLK----LADGT-LITCVSSGNLQVR 130 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchh----hcCCE-EEEEecCCcEEEE
Confidence 34455555544443444443 445555555554433322 233445555553 22334 8888999999999
Q ss_pred eCCCce----EEEEEeCCCcCeEEEEEecCCCeEEEEecCC--CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEE
Q 005254 427 DSESRC----CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 500 (706)
Q Consensus 427 d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 500 (706)
..+.+. .+..+. ....+..+.-++..+.++++|+.. ..+.+||+......- ...+.+....-..-.-.++.+
T Consensus 131 ~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw-~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW-SAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred eccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeee-eccCCCCccccceeeeeeccc
Confidence 988432 222222 235666677777777788889999 899999998763111 111111111111123457788
Q ss_pred EEcCC--CCEEEEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE-Eee
Q 005254 501 AVAPN--DSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-FEG 576 (706)
Q Consensus 501 ~~s~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~ 576 (706)
.|-+. ...+++++.-+.+++||.+.+ +++..+.-...+++++...|+++++++|..-|.+..+|++.++.+.. +.+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 89887 889999999999999999865 67788888889999999999999999999999999999999988776 888
Q ss_pred cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCC
Q 005254 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK 631 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 631 (706)
-.+.|+++..+|.+++|++++-|..|+|+|+++.+++..... ...+++|.+.++
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence 889999999999999999999999999999999777655432 345566666544
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=9.6e-14 Score=119.62 Aligned_cols=291 Identities=18% Similarity=0.194 Sum_probs=185.9
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC--
Q 005254 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-- 178 (706)
Q Consensus 102 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-- 178 (706)
...+..++|++.-.-+|++..|-.|++||-.+ +....++ .....|++++|-|.+.. .++.|+..| |.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsas-elavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSAS-ELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcc-eeeeeecce-eEEEEcCcccc
Confidence 45678899999777788999999999999877 4444444 34677999999998654 577788777 999976421
Q ss_pred --ee----------EEEeecccceEEEEEEecCCCEEEEEeC-CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcc
Q 005254 179 --KC----------VATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD 245 (706)
Q Consensus 179 --~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (706)
+. +..-++| .+|++|.|.+||..+++++. +..|.+||.+++..+...
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~------------------- 234 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI------------------- 234 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-------------------
Confidence 11 1122344 68999999999999988874 567888887765433211
Q ss_pred cccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeC
Q 005254 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (706)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (706)
T Consensus 235 -------------------------------------------------------------------------------- 234 (445)
T KOG2139|consen 235 -------------------------------------------------------------------------------- 234 (445)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeee
Q 005254 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC 405 (706)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 405 (706)
...-+.+.-+.
T Consensus 235 -------------------------------------------------------------------~~glgg~slLk-- 245 (445)
T KOG2139|consen 235 -------------------------------------------------------------------PKGLGGFSLLK-- 245 (445)
T ss_pred -------------------------------------------------------------------ccCCCceeeEE--
Confidence 01111222333
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
++|++.. ++++.-|+..++|+..............+.|...+|+|.|+.+|++.+..-.++-..+.........+...+
T Consensus 246 wSPdgd~-lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 246 WSPDGDV-LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred EcCCCCE-EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccce
Confidence 7888888 777888999999965443322222334459999999999998888887666555444433322111111111
Q ss_pred eeEE---------E---eecCcceEEEEEcCCCCEEEEeeCCCc--------EEEEeCCCccEEEEEe-e--cCCcEEEE
Q 005254 486 AKAV---------V---AAHGKDINSLAVAPNDSLVCTGSQDRT--------ACVWRLPDLVSVVTFR-G--HKRGIWSV 542 (706)
Q Consensus 486 ~~~~---------~---~~~~~~i~~~~~s~~~~~l~~~~~dg~--------i~i~d~~~~~~~~~~~-~--~~~~v~~~ 542 (706)
.... . .--.+++.+++|.|.|.+||+....+. |.+||....-.+.... + .......+
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~I 404 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYI 404 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceE
Confidence 1110 0 112567899999999999999765543 6667765443332221 1 11124456
Q ss_pred EEcc---CCCEEEEecCCCcEEEEEc
Q 005254 543 EFSP---VDQVVITASGDKTIKIWSI 565 (706)
Q Consensus 543 ~~s~---~~~~l~~~~~dg~i~iwd~ 565 (706)
.|+| ++.+|..+=..|.+.-|++
T Consensus 405 sF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 405 SFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EeeecccCCcEEEEEeccCceEeeee
Confidence 6666 4566666666777777765
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=6.4e-15 Score=128.19 Aligned_cols=211 Identities=13% Similarity=0.185 Sum_probs=165.8
Q ss_pred CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC-CEEEEeeCC--
Q 005254 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQD-- 515 (706)
Q Consensus 439 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d-- 515 (706)
....+|..++.... .|++|-.+|.+.+|....+.... ...........+..+.-++.. .++++|+..
T Consensus 103 l~~~~I~gl~~~dg---~Litc~~sG~l~~~~~k~~d~hs-------s~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~ 172 (412)
T KOG3881|consen 103 LGTKSIKGLKLADG---TLITCVSSGNLQVRHDKSGDLHS-------SKLIKLATGPGLYDVRQTDTDPYIVATGGKENI 172 (412)
T ss_pred cccccccchhhcCC---EEEEEecCCcEEEEeccCCcccc-------ccceeeecCCceeeeccCCCCCceEecCchhcc
Confidence 34556666665544 79999999999999988653221 111112223455566666644 455668888
Q ss_pred CcEEEEeCCCccEEEEEeecC---------CcEEEEEEccC--CCEEEEecCCCcEEEEEcCCC-ceEEEEeecccCEEE
Q 005254 516 RTACVWRLPDLVSVVTFRGHK---------RGIWSVEFSPV--DQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLR 583 (706)
Q Consensus 516 g~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~ 583 (706)
..+.+||+...+++..-+... -.++++.|-+. ...||+++.-+++++||.+.+ +++..+.....++++
T Consensus 173 n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~ 252 (412)
T KOG3881|consen 173 NELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISS 252 (412)
T ss_pred cceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCccee
Confidence 789999999886665544321 23678889887 789999999999999999876 567888878889999
Q ss_pred EEEEeCCCEEEEEeCCCCEEEEECCCCeEEEE-eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHHH
Q 005254 584 ASFLTRGAQIVSCGADGLVKLWTVRTGECIAT-YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAF 659 (706)
Q Consensus 584 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 659 (706)
+...|+|+++++|..-|.+..||++.++.+.. +.+..+.|+++..+|..++|+++|-|..++|+|+.+.+......
T Consensus 253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred eeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 99999999999999999999999999998877 88999999999999999999999999999999999976665544
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=4.8e-14 Score=137.50 Aligned_cols=236 Identities=11% Similarity=0.067 Sum_probs=160.2
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee--CCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (706)
..+.++|........ +..+...+.... ++|+++.++++.. .+..+.+|++.+++.... ....+.+...+|+|+|
T Consensus 179 ~~l~~~d~dg~~~~~-lt~~~~~~~~p~--wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 179 YELRVSDYDGYNQFV-VHRSPQPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDG 254 (429)
T ss_pred eeEEEEcCCCCCCEE-eecCCCceeeeE--EcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCC
Confidence 368888887655443 334555666666 8999998554433 235799999988764432 2233445578999999
Q ss_pred CeEEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-Cc--EEEEeCCCccE
Q 005254 454 QNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-RT--ACVWRLPDLVS 528 (706)
Q Consensus 454 ~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~--i~i~d~~~~~~ 528 (706)
+.++++.+.+| .|.+||+..+. ...+..+...+....|+|||+.|+..+.+ +. |+++|+.+++.
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~-----------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQ-----------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCC-----------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 96666655555 48888886542 22223334457889999999988877654 44 55557766644
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCC---CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCC---E
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL---V 602 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---i 602 (706)
. .+..+........|+|||++|+..+.+ ..|.+||+.+++.. .+.. ........|+|||++|+..+.++. +
T Consensus 324 ~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 Q-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred E-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEE
Confidence 3 333344456678999999998876543 35889999887644 3332 122346789999999999988864 6
Q ss_pred EEEECCCCeEEEEeccCCCcEEEEEEcC
Q 005254 603 KLWTVRTGECIATYDKHEDKIWALAVGK 630 (706)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 630 (706)
.++++ +|+....+..|.+.+...+|+|
T Consensus 401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 401 NLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 77777 5666677888888899999987
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.67 E-value=1.4e-14 Score=123.05 Aligned_cols=150 Identities=18% Similarity=0.266 Sum_probs=113.2
Q ss_pred EEEEEcCCCCEEEEeeC----------CCcEEEEeCCC-ccEEEEEee-cCCcEEEEEEccCCCEEEEe--cCCCcEEEE
Q 005254 498 NSLAVAPNDSLVCTGSQ----------DRTACVWRLPD-LVSVVTFRG-HKRGIWSVEFSPVDQVVITA--SGDKTIKIW 563 (706)
Q Consensus 498 ~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~-~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~--~~dg~i~iw 563 (706)
..+.|+|+|.+|++-.. -+...+|.++. ......+.- ..++|.+++|+|+|+.+++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45789999988876443 13355555522 233444433 34579999999999987654 456799999
Q ss_pred EcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC---CCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 005254 564 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 564 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 640 (706)
|++ ++.+..+. ...++.+.|+|+|++|++++.+ |.|.+||.++.+.+..... . .++.++|||||++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-~-~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-S-DATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-C-cEEEEEEcCCCCEEEEEEe
Confidence 996 77777764 5678899999999999998754 5699999999998877643 3 4789999999999998764
Q ss_pred ------CCcEEEEECCch
Q 005254 641 ------DALVNLWHDSTA 652 (706)
Q Consensus 641 ------dg~i~vw~~~~~ 652 (706)
|+.++||++...
T Consensus 164 ~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ccceeccccEEEEEecCe
Confidence 889999999644
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=5.9e-14 Score=128.50 Aligned_cols=281 Identities=15% Similarity=0.171 Sum_probs=195.2
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
.+......+..+++..-.+++|.....|++||+.+......-......|.-.- .+.+-.. ++.-..|.+|.+-.-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~fei--LsDD~SK-~v~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEI--LSDDYSK-SVFLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEE--eccchhh-heEeecCceeeehhhc-
Confidence 34556667788887777788899999999999998776554433333443321 2222222 4444455555543221
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
|.....- -...-..++++.-... |+.++....|+-+++..+. ....+......++++.+++...+|+
T Consensus 125 G~hy~~R--IP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGr----------fL~P~~~~~~~lN~v~in~~hgLla 191 (703)
T KOG2321|consen 125 GRHYRTR--IPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGR----------FLNPFETDSGELNVVSINEEHGLLA 191 (703)
T ss_pred Ceeeeee--cCcCCccccccCCCcc-EEEeecCcceEEEEccccc----------cccccccccccceeeeecCccceEE
Confidence 1111110 0112233444433332 4555555567777887664 3444455567899999999999999
Q ss_pred EeeCCCcEEEEeCCCccEEEEEee------cCC-----cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-
Q 005254 511 TGSQDRTACVWRLPDLVSVVTFRG------HKR-----GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT- 578 (706)
Q Consensus 511 ~~~~dg~i~i~d~~~~~~~~~~~~------~~~-----~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 578 (706)
+|+.+|.|..||.+.......+.. |.+ .|+++.|+.+|-.+++|..+|.+.|||+++.+++..-. |.
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-h~~ 270 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-HGY 270 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-cCC
Confidence 999999999999988766665542 333 49999999999999999999999999999988876544 43
Q ss_pred -cCEEEEEEEeC--CCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 579 -SSVLRASFLTR--GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 579 -~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
-+|..+.|.+. +..+++. ....++|||-.+|+....+.. ...++.+++-|++.+++++-+++.+..|=++.
T Consensus 271 e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 47888899775 3455554 346899999999999988876 44599999999999999999998888776654
No 236
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.65 E-value=1.4e-09 Score=114.58 Aligned_cols=518 Identities=15% Similarity=0.128 Sum_probs=292.6
Q ss_pred cceEEcCCCCEEEEeeCC-e----EEEEEccCCe---EEEeec-----CCCccEEEEEEccCCCEEEEEeccCeEEEE--
Q 005254 23 GPLVVSSDGSFIACACGE-S----INIVDLSNAS---IKSTIE-----GGSDTITALALSPDDKLLFSSGHSREIRVW-- 87 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~----i~i~d~~~~~---~~~~l~-----~~~~~i~~l~~s~~~~~l~s~~~d~~i~iw-- 87 (706)
.+.+|.++.+.+.++.+. . |.+-...... .+..+. .....|.++.+-++..-++.+..+|.|.+.
T Consensus 25 ~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~ 104 (928)
T PF04762_consen 25 TATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILVRE 104 (928)
T ss_pred ceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEEEc
Confidence 356777777666666554 2 2333322221 233332 235689999999999999999999999999
Q ss_pred --ECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC---------------C--------CeEEEEeeC
Q 005254 88 --DLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD---------------G--------GFCTHYFKG 142 (706)
Q Consensus 88 --d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~---------------~--------~~~~~~~~~ 142 (706)
+..+... .....-...|.+++||||+..||..+.++++.+-+-+ . |+.-..|+|
T Consensus 105 ~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~G 183 (928)
T PF04762_consen 105 DPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHG 183 (928)
T ss_pred cCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCc
Confidence 5444322 2222245899999999999999999988888776421 0 011111111
Q ss_pred ------------------------CCCcEEEEEEcCCCCceEEEEEec------CCeEEEEECCCCeeEEEeecccceEE
Q 005254 143 ------------------------HKGVVSSILFHPDTDKSLLFSGSD------DATVRVWDLLAKKCVATLDKHFSRVT 192 (706)
Q Consensus 143 ------------------------~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~ 192 (706)
+...-..++|-.||.. +|+.+. -..++||+- +|....+...-.+--.
T Consensus 184 s~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y--FAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~ 260 (928)
T PF04762_consen 184 SAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY--FAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEG 260 (928)
T ss_pred chhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE--EEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccC
Confidence 1223466888888776 666553 268999995 4765555444445556
Q ss_pred EEEEecCCCEEEEEeC---CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEE
Q 005254 193 SMAITSDGSTLISAGR---DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 269 (706)
Q Consensus 193 ~~~~~~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (706)
+++|-|.|+++++... ...|.+|.-...+ ...+.
T Consensus 261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr-hgeF~------------------------------------------ 297 (928)
T PF04762_consen 261 ALSWRPSGNLIASSQRLPDRHDVVFFERNGLR-HGEFT------------------------------------------ 297 (928)
T ss_pred CccCCCCCCEEEEEEEcCCCcEEEEEecCCcE-eeeEe------------------------------------------
Confidence 7899999999888764 2344444422111 10000
Q ss_pred ecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEe
Q 005254 270 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL 349 (706)
Q Consensus 270 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (706)
.........+..+.+++++..|++...+. +.+|....- .......+
T Consensus 298 ----------------------------l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY-----HWYLKqei 343 (928)
T PF04762_consen 298 ----------------------------LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY-----HWYLKQEI 343 (928)
T ss_pred ----------------------------cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC-----EEEEEEEE
Confidence 01112234457788888888888877555 888876643 11122222
Q ss_pred c-ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeC
Q 005254 350 V-GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428 (706)
Q Consensus 350 ~-~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 428 (706)
. .....+..+.|.+.+...|.+.+.+|.+..++..-.... +.. ..|.+.- .+..-+..++.+-.+
T Consensus 344 ~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~----s~~---------~~~~D~g-~vaVIDG~~lllTpf 409 (928)
T PF04762_consen 344 RFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR----SPG---------SSPNDNG-TVAVIDGNKLLLTPF 409 (928)
T ss_pred EccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe----cCC---------CCccCce-EEEEEeCCeEEEecc
Confidence 2 222334458999998888999888888877664311110 000 1111111 111111123333333
Q ss_pred CCc-----eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCC-Cccccccee-------EEEeecCc
Q 005254 429 ESR-----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA-EQPMNLKAK-------AVVAAHGK 495 (706)
Q Consensus 429 ~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~ 495 (706)
... -....+. ....|.+++|++++. .+++...||.+.+|......... ..+...... ........
T Consensus 410 ~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (928)
T PF04762_consen 410 RRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLG 487 (928)
T ss_pred cccCCCchHhceEEc-CCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccc
Confidence 321 1112222 357899999999976 58889999999999976543221 011000000 01122345
Q ss_pred ceEEEEEcCCCCEEEEeeCC---CcEEEEeCCCcc---EEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc
Q 005254 496 DINSLAVAPNDSLVCTGSQD---RTACVWRLPDLV---SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 569 (706)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 569 (706)
.+..++|..+..+++....+ ..+.++++...+ .......-...+..+...++...++.-..+|.+...+.....
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 488 SLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred cEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 57888888888777766654 568888874332 233333344556566666655556666778988866654332
Q ss_pred e-EEEEeecccCEEEEEEEeCCC---EEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 005254 570 C-LKTFEGHTSSVLRASFLTRGA---QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVN 645 (706)
Q Consensus 570 ~-~~~~~~~~~~i~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 645 (706)
. +..+......+ .+....+.. .++.-+..|.+++ +++.+. ..+++..+ .+.+|+.......++
T Consensus 568 ~~~~~fp~~c~~~-~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la------~~~tSF~v--~~~~Ll~TT~~h~l~ 634 (928)
T PF04762_consen 568 SQIVKFPQPCPWM-EVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA------SNCTSFAV--TDSFLLFTTTQHTLK 634 (928)
T ss_pred cccccCCCCCcEE-EEEEECCccceeEEEEECCCCEEEE----CCEEEe------cCCceEEE--EcCEEEEEecCceEE
Confidence 2 22232211222 222222322 3444444555553 344432 45677776 455666666677788
Q ss_pred EEECC
Q 005254 646 LWHDS 650 (706)
Q Consensus 646 vw~~~ 650 (706)
+.++.
T Consensus 635 fv~L~ 639 (928)
T PF04762_consen 635 FVHLN 639 (928)
T ss_pred EEECc
Confidence 88888
No 237
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=1e-12 Score=111.45 Aligned_cols=234 Identities=14% Similarity=0.207 Sum_probs=172.4
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEE-Eec------cCeEEEEECCCCeEEEE
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFS-SGH------SREIRVWDLSTLKCLRS 97 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s-~~~------d~~i~iwd~~~~~~~~~ 97 (706)
++|..|..-++++.+...+||+.+.-+.....+.+...+.-+..--..++||- ||. .+.|.|||=...+++.+
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~e 90 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIE 90 (346)
T ss_pred EEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEE
Confidence 89999999999999999999998654432222222222222222223456653 332 35799999777788888
Q ss_pred eeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC-CCeEEEEeeCCCCcEEEEEEcCCCCceEEEE-EecCCeEEEEEC
Q 005254 98 WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD-GGFCTHYFKGHKGVVSSILFHPDTDKSLLFS-GSDDATVRVWDL 175 (706)
Q Consensus 98 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~vwd~ 175 (706)
+. ...+|.++.++++. |++.- .+.|.||... +.+.++.+.....+=--++..|.....+|+. |-.-|.|.|-|+
T Consensus 91 l~-f~~~I~~V~l~r~r--iVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 91 LS-FNSEIKAVKLRRDR--IVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred EE-eccceeeEEEcCCe--EEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence 87 66899999999764 55554 5789999997 5666666654332322344455544444544 556799999999
Q ss_pred CCCee--EEEeecccceEEEEEEecCCCEEEEEeCCCE-EEEEeCCCCcceeeecC---cceeeeEEeeCCCCCcccccc
Q 005254 176 LAKKC--VATLDKHFSRVTSMAITSDGSTLISAGRDKV-VNLWDLRDYSCKLTVPT---YEMVEAVCAIPPGSAFDSFLS 249 (706)
Q Consensus 176 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 249 (706)
...+. ...+..|.+.|.|++.+.+|..+++++..|+ |++||..++..+.++.. ...+.+++++++.+
T Consensus 167 ~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s------- 239 (346)
T KOG2111|consen 167 ASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS------- 239 (346)
T ss_pred hhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc-------
Confidence 76655 4678899999999999999999999999885 79999999999888754 45688899999987
Q ss_pred cccchhhhccccccceEEEEecCCCeEEEEECCCCe
Q 005254 250 SYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 285 (706)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 285 (706)
.++++++.|++.++.+....
T Consensus 240 ----------------~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 240 ----------------WLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ----------------EEEEEcCCCeEEEEEeecCC
Confidence 78999999999999987753
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=5.6e-13 Score=122.15 Aligned_cols=315 Identities=13% Similarity=0.183 Sum_probs=196.6
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEE-----e-----ccCeEEEEECCCCe
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-----G-----HSREIRVWDLSTLK 93 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~-----~-----~d~~i~iwd~~~~~ 93 (706)
..++|++|+++|+..+..+.|++..++..+.+...- .+.++.|||-|.+|.+= . ....+.+|+++++.
T Consensus 39 v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~ 116 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGV 116 (566)
T ss_pred eEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeeccce
Confidence 588999999999999999999999988655544432 78999999999999762 1 13468899999976
Q ss_pred EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEE-----EecCC
Q 005254 94 CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS-----GSDDA 168 (706)
Q Consensus 94 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg 168 (706)
....+......-.+..|++|..+.|-. ..+.+.+|+..+.+.+.. +-|...|..+.++|......+++ .+.-+
T Consensus 117 ~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa 194 (566)
T KOG2315|consen 117 QRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPA 194 (566)
T ss_pred ehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCc
Confidence 666665433333689999998654432 357799999987443322 23788899999999766555654 34557
Q ss_pred eEEEEECCCCeeEEEe---ecccceEEEEEEecCCCEEE-EEeC--C---------CEEEEEeCCCCcceeeecCcceee
Q 005254 169 TVRVWDLLAKKCVATL---DKHFSRVTSMAITSDGSTLI-SAGR--D---------KVVNLWDLRDYSCKLTVPTYEMVE 233 (706)
Q Consensus 169 ~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~-~~~~--d---------g~i~~w~~~~~~~~~~~~~~~~~~ 233 (706)
.|++|..........+ .-....=..+.|++-|.-|+ .++. | ..+++.+++..+..-.+...
T Consensus 195 ~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~---- 270 (566)
T KOG2315|consen 195 SVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE---- 270 (566)
T ss_pred EEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC----
Confidence 8999987532211111 00112233567777665332 2221 2 23444444422333333333
Q ss_pred eEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEc
Q 005254 234 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL 313 (706)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (706)
T Consensus 271 -------------------------------------------------------------------------------- 270 (566)
T KOG2315|consen 271 -------------------------------------------------------------------------------- 270 (566)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEE-EecCCcEEEEeCCCceeeEee
Q 005254 314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV-ATNIEQVQVYDLSSMSCSYVL 392 (706)
Q Consensus 314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~~~~i~~~d~~~~~~~~~~ 392 (706)
++|.++.|++....+.++ |..--.+.++|+...-..
T Consensus 271 ----------------------------------------GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~--- 307 (566)
T KOG2315|consen 271 ----------------------------------------GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF--- 307 (566)
T ss_pred ----------------------------------------CCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeE---
Confidence 344444444433222222 233345555655433222
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEee--CCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec-C-----CC
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-S-----DH 464 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~-----d~ 464 (706)
.-..++-.++- ++|.++.++++|- -.|.+.+||..+.+++..+... .-+-+.|+|+|+ +++++. . |+
T Consensus 308 df~egpRN~~~--fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe-~flTATTaPRlrvdN 382 (566)
T KOG2315|consen 308 DFPEGPRNTAF--FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGE-YFLTATTAPRLRVDN 382 (566)
T ss_pred eCCCCCccceE--ECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCc-EEEEEeccccEEecC
Confidence 22223333333 7888888666654 3589999999998888776543 345689999999 455443 3 78
Q ss_pred eEEEEEecCC
Q 005254 465 TIKVWSFDGL 474 (706)
Q Consensus 465 ~i~i~~~~~~ 474 (706)
.++||++...
T Consensus 383 g~KiwhytG~ 392 (566)
T KOG2315|consen 383 GIKIWHYTGS 392 (566)
T ss_pred CeEEEEecCc
Confidence 8999998764
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=7.6e-14 Score=127.81 Aligned_cols=295 Identities=16% Similarity=0.155 Sum_probs=206.0
Q ss_pred CCccEEEEEEccCCCEEE-EEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Q 005254 59 GSDTITALALSPDDKLLF-SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT 137 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~ 137 (706)
|+..-+.|..+|||+|+. +|.....|++||+.+..+...-.-....|.-.-.+.|-..++.-..|.+|-+..-. |.-.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~hy 128 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRHY 128 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Ceee
Confidence 566778999999999965 56678999999998866544333334566666677777777777788888765432 2211
Q ss_pred EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 138 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
. ++ -...-..++++.-.-. |+.++....|+-.+++.|+.+..+....+.++++..++-..+|++|+.+|.|.+||.
T Consensus 129 ~-~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 129 R-TR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred e-ee-cCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence 1 11 1122234555433223 666667777999999999999999888899999999999899999999999999999
Q ss_pred CCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccc
Q 005254 218 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 297 (706)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 297 (706)
++.+.+..+.....+....
T Consensus 205 R~ksrv~~l~~~~~v~s~p------------------------------------------------------------- 223 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHP------------------------------------------------------------- 223 (703)
T ss_pred hhhhhheeeecccccCCCc-------------------------------------------------------------
Confidence 9877666554332211100
Q ss_pred cccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCc
Q 005254 298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 377 (706)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 377 (706)
.......|.++.|.. ++-.+++|+..|.
T Consensus 224 ---------------------------------------------------g~~~~~svTal~F~d-~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 224 ---------------------------------------------------GGDAAPSVTALKFRD-DGLHVAVGTSTGS 251 (703)
T ss_pred ---------------------------------------------------cccccCcceEEEecC-CceeEEeeccCCc
Confidence 001123456666654 4778889999999
Q ss_pred EEEEeCCCceeeEee-eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeE
Q 005254 378 VQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 456 (706)
Q Consensus 378 i~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 456 (706)
+.+||+.+.+++..- .+..-+|..++|.-. ++.. .+.......++|||-.+|+....+... ..+..+++-|++. +
T Consensus 252 v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~-~~q~-~v~S~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sG-m 327 (703)
T KOG2321|consen 252 VLIYDLRASKPLLVKDHGYELPIKKLDWQDT-DQQN-KVVSMDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSG-M 327 (703)
T ss_pred EEEEEcccCCceeecccCCccceeeeccccc-CCCc-eEEecchHHhhhcccccCCceeecccc-CCcCceeeecCCc-e
Confidence 999999887766432 234456777774333 2333 444556778999999999988876644 4599999999987 8
Q ss_pred EEEecCCCeEEEEEecCCC
Q 005254 457 LVSGSSDHTIKVWSFDGLS 475 (706)
Q Consensus 457 l~~~~~d~~i~i~~~~~~~ 475 (706)
++++-.+..+..|-++...
T Consensus 328 ~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 328 FFTANESSKMHTYYIPSLG 346 (703)
T ss_pred EEEecCCCcceeEEccccC
Confidence 8899888888888776554
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=5.3e-14 Score=119.59 Aligned_cols=152 Identities=18% Similarity=0.306 Sum_probs=112.8
Q ss_pred ceEEcCCCCEEEEeeCC-------------eEEEEEccCCeEEEeecC-CCccEEEEEEccCCCEEEEE--eccCeEEEE
Q 005254 24 PLVVSSDGSFIACACGE-------------SINIVDLSNASIKSTIEG-GSDTITALALSPDDKLLFSS--GHSREIRVW 87 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-------------~i~i~d~~~~~~~~~l~~-~~~~i~~l~~s~~~~~l~s~--~~d~~i~iw 87 (706)
.+.++|+|++|++-... .|..++.... ....+.- ..++|.+++|+|+|+.+|+. ..++.|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 58899999998876551 2444444433 3343432 34579999999999987655 346799999
Q ss_pred ECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecC---CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE
Q 005254 88 DLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA---DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG 164 (706)
Q Consensus 88 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 164 (706)
|++ ++.+..+. ...+..+.|||+|++|++++. .|.|.+||.++.+.+.... | ..++.++|+|+|+. ++++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~--~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRY--LATA 161 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCE--EEEE
Confidence 996 67766665 567889999999999999874 4679999999988887765 3 34789999999987 5555
Q ss_pred e------cCCeEEEEECCCCeeEEEe
Q 005254 165 S------DDATVRVWDLLAKKCVATL 184 (706)
Q Consensus 165 ~------~dg~i~vwd~~~~~~~~~~ 184 (706)
. .|+.++||+. .|+.+...
T Consensus 162 ~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EeccceeccccEEEEEe-cCeEeEec
Confidence 4 3788999998 46655443
No 241
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.1e-12 Score=119.91 Aligned_cols=158 Identities=13% Similarity=0.170 Sum_probs=113.9
Q ss_pred EEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEec
Q 005254 42 INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG 121 (706)
Q Consensus 42 i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 121 (706)
...|+...+.....-.-..-.-+-+.|||-|.||++--..| |.+|--++...++.|. | ..|.-+.|||+.+||++-+
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s 268 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYS 268 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEec
Confidence 56677655433222222334568899999999999987665 8999888888888777 5 5688999999999999975
Q ss_pred C-----------CCcEEEEECCCCeEEEEeeCCCC--c-EEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecc
Q 005254 122 A-----------DRKVLVWDVDGGFCTHYFKGHKG--V-VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH 187 (706)
Q Consensus 122 ~-----------d~~i~vw~~~~~~~~~~~~~~~~--~-v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 187 (706)
. ...++|||+.+|.....|....+ . -.-..||.|+++ +|.-.. ..|.||+..+..++..-.-.
T Consensus 269 ~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy--~Arm~~-~sisIyEtpsf~lld~Kslk 345 (698)
T KOG2314|consen 269 PEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY--FARMTG-NSISIYETPSFMLLDKKSLK 345 (698)
T ss_pred CCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCce--eEEecc-ceEEEEecCceeeecccccC
Confidence 2 25799999999998888775322 2 345679998876 665555 45999998765544333334
Q ss_pred cceEEEEEEecCCCEEEE
Q 005254 188 FSRVTSMAITSDGSTLIS 205 (706)
Q Consensus 188 ~~~v~~~~~~~~~~~l~~ 205 (706)
-..|....|+|.+..|+-
T Consensus 346 i~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 346 ISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred CccccCcccCCCcceEEE
Confidence 567888999998665553
No 242
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3.8e-13 Score=131.26 Aligned_cols=215 Identities=13% Similarity=0.047 Sum_probs=145.0
Q ss_pred cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec--CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEE
Q 005254 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (706)
.|.++|........ +..+...+...+|+|+|+.++++.. .+..+.+|++..+. ...+.........
T Consensus 180 ~l~~~d~dg~~~~~-lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-----------~~~l~~~~~~~~~ 247 (429)
T PRK03629 180 ELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-----------VRQVASFPRHNGA 247 (429)
T ss_pred eEEEEcCCCCCCEE-eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-----------eEEccCCCCCcCC
Confidence 68888887654433 3446678999999999985544432 24578889887642 1111222333456
Q ss_pred EEEcCCCCEEEEe-eCCC--cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCC-C--cEEEEEcCCCceEEE
Q 005254 500 LAVAPNDSLVCTG-SQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKT 573 (706)
Q Consensus 500 ~~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~ 573 (706)
..|+|||+.|+.. +.+| .|++||+.+++.... ..+...+....|+|||+.|+..+.+ + .|+++|+.+++. ..
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EE
Confidence 8999999988865 4444 588999988765443 3344567889999999988776654 4 455557766544 33
Q ss_pred EeecccCEEEEEEEeCCCEEEEEeCC---CCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc---EEEE
Q 005254 574 FEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL---VNLW 647 (706)
Q Consensus 574 ~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~vw 647 (706)
+..+........|+|||++|+..+.+ ..|.+||+.+++.. .+... .......|+|||++|+.++.++. +.++
T Consensus 326 lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 326 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 33344455678999999999876654 35889999888754 33321 22346789999999998887765 6677
Q ss_pred ECCch
Q 005254 648 HDSTA 652 (706)
Q Consensus 648 ~~~~~ 652 (706)
+++..
T Consensus 404 ~~~G~ 408 (429)
T PRK03629 404 STDGR 408 (429)
T ss_pred ECCCC
Confidence 77533
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.3e-13 Score=134.89 Aligned_cols=239 Identities=13% Similarity=0.088 Sum_probs=156.3
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC--CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (706)
..+.++|.... ....+..+...+.... ++|+++.++++...+ ..|.+||+.+++.... ....+.....+|+|+|
T Consensus 176 ~~L~~~D~dG~-~~~~l~~~~~~v~~p~--wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDADGQ-NAQSALSSPEPIISPA--WSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECCCCC-CceEeccCCCCcccce--EcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCC
Confidence 45777776433 3334445566676666 889998844444333 3599999998876543 3344566789999999
Q ss_pred CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CCcEEEEeC--CCccEEE
Q 005254 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRL--PDLVSVV 530 (706)
Q Consensus 454 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~--~~~~~~~ 530 (706)
+.++++.+.+|...+|.++.... ....+..+........|+|||+.|+..+. +|...+|.+ .++....
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGS---------GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCC---------CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence 86667788888878877653211 11222223344567889999998886654 455566644 4444322
Q ss_pred EEeecCCcEEEEEEccCCCEEEEecCCC---cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC---CEEE
Q 005254 531 TFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---LVKL 604 (706)
Q Consensus 531 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i 604 (706)
+..+.......+|+|||++|+..+.++ .|.+||+.+++...... ........|+|||++|+..+.++ .+.+
T Consensus 323 -lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 323 -VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred -EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEE
Confidence 222223344678999999998776654 69999998876543322 22346789999999998877654 3556
Q ss_pred EECCCCeEEEEeccCCCcEEEEEEcCC
Q 005254 605 WTVRTGECIATYDKHEDKIWALAVGKK 631 (706)
Q Consensus 605 wd~~~~~~~~~~~~~~~~v~~~~~s~~ 631 (706)
.++ +|+....+..+.+.+...+|+|-
T Consensus 400 ~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 400 VSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEC-CCCceEEeecCCCCCCCCccCCC
Confidence 666 56666666667777888888873
No 244
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.4e-13 Score=135.20 Aligned_cols=236 Identities=16% Similarity=0.098 Sum_probs=157.0
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC--CCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (706)
..+.+||...... ..+..+...+.... ++|+++.++.+... +..|++||+.+++.... ....+...+.+|+|+|
T Consensus 184 ~~l~i~D~~g~~~-~~lt~~~~~v~~p~--wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 184 YALQVADSDGYNP-QTILRSAEPILSPA--WSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEEECCCCCCc-eEeecCCCcccccc--CCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCC
Confidence 3578888764433 34455566666666 88999884444332 34699999988765433 3334455678999999
Q ss_pred CeEEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CCc--EEEEeCCCccE
Q 005254 454 QNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRT--ACVWRLPDLVS 528 (706)
Q Consensus 454 ~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~--i~i~d~~~~~~ 528 (706)
+.++++.+.+| .|++||+..+. ...+..+.......+|+|||+.|+..+. +|. |+++|+.+++.
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 86666666665 58888886542 2222333344567899999998887764 444 77777766654
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCCC---cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC---CCE
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLV 602 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i 602 (706)
.. +..+.......+|+|||++|+..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|
T Consensus 329 ~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 329 ER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred EE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEE
Confidence 33 222333445689999999998765433 6999999877655 333 32344567999999998877664 368
Q ss_pred EEEECCCCeEEEEeccCCCcEEEEEEcC
Q 005254 603 KLWTVRTGECIATYDKHEDKIWALAVGK 630 (706)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 630 (706)
.++++. +.....+..+.+.+...+|+|
T Consensus 406 ~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 406 AAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEECC-CCceEEcccCCCCCCCCccCC
Confidence 888884 555566666667777778876
No 245
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=3.9e-13 Score=132.36 Aligned_cols=216 Identities=9% Similarity=-0.023 Sum_probs=148.5
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec--CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
..|.++|.... ....+..+...+...+|+|+|+.++++.. .+..|.+|++..+. ...+..+...+.
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-----------~~~l~~~~g~~~ 249 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-----------RELVGNFPGMTF 249 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-----------EEEeecCCCccc
Confidence 36888887544 44455677889999999999984444432 34689999987652 223334455677
Q ss_pred EEEEcCCCCEEE-EeeCCCc--EEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CC--cEEEEEcCCCceEE
Q 005254 499 SLAVAPNDSLVC-TGSQDRT--ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DK--TIKIWSISDGSCLK 572 (706)
Q Consensus 499 ~~~~s~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~ 572 (706)
..+|+|||+.|+ +.+.++. |++||+.++.. ..+..+........|+|||+.|+..+. +| .|+++|+.+++..
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~- 327 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR- 327 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-
Confidence 889999998876 4455554 77789887755 445556666778999999998887664 33 6888898765543
Q ss_pred EEeecccCEEEEEEEeCCCEEEEEeCC---CCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC------Cc
Q 005254 573 TFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD------AL 643 (706)
Q Consensus 573 ~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~ 643 (706)
.+..+...+....|+|||++|+....+ ..|.+||+.++.. ..+.. ...+....|+|||++|+..+.+ ..
T Consensus 328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~ 405 (435)
T PRK05137 328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPK 405 (435)
T ss_pred EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcce
Confidence 343344556678999999999887654 3688889865543 33322 2346788999999988765543 25
Q ss_pred EEEEECCch
Q 005254 644 VNLWHDSTA 652 (706)
Q Consensus 644 i~vw~~~~~ 652 (706)
+.++++..+
T Consensus 406 L~~~dl~g~ 414 (435)
T PRK05137 406 LYTVDLTGR 414 (435)
T ss_pred EEEEECCCC
Confidence 777777654
No 246
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.61 E-value=4.6e-11 Score=109.34 Aligned_cols=116 Identities=20% Similarity=0.158 Sum_probs=86.6
Q ss_pred CeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecC----------CCcEEEEECCCCeEEEEeeCCC-------
Q 005254 82 REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA----------DRKVLVWDVDGGFCTHYFKGHK------- 144 (706)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------d~~i~vw~~~~~~~~~~~~~~~------- 144 (706)
+.|.+.|..+++.+.++..-..+- .+ +|||++.|+++.. +..|.+||..+++.+..+.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999999988644443 34 9999999888754 6889999999999998876322
Q ss_pred CcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC
Q 005254 145 GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK 210 (706)
Q Consensus 145 ~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 210 (706)
.....++++|||+..+++--+.+..|.+.|+.+++.+..+.- |++..++..++++
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~ 159 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----------PDCYHIFPTANDT 159 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----------CCCcEEEEecCCc
Confidence 233578999998873333334488999999999998887753 5555555554443
No 247
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=6.6e-13 Score=130.73 Aligned_cols=235 Identities=12% Similarity=0.010 Sum_probs=157.8
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee--CCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (706)
..|.++|..... ...+..+...+.... ++|+++.++.+.. .+..|.+||+.+++.. .+..+.+.+...+|+|+|
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~--wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPR--FSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeE--ECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCC
Confidence 378888875443 345566777787777 8899998544443 2468999999888654 344556677889999999
Q ss_pred CeEEEEecCCCe--EEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CC--cEEEEeCCCccE
Q 005254 454 QNFLVSGSSDHT--IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVS 528 (706)
Q Consensus 454 ~~~l~~~~~d~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~ 528 (706)
+.++++.+.++. |.+||+..+. ...+..+........|+|||+.++..+. +| .|+++|+.+++.
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~-----------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGT-----------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCc-----------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 876677777666 5556665442 2223334445667899999999887764 33 588888876654
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCC---CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC------
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD------ 599 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------ 599 (706)
.. +..+...+....|+|||+.|+....+ ..|.+||+..+.. ..+. ....+....|+|||++|+..+.+
T Consensus 327 ~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~ 403 (435)
T PRK05137 327 RR-ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGA 403 (435)
T ss_pred EE-eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence 33 33345556778999999999876543 3688889865443 3333 22346678999999998776543
Q ss_pred CCEEEEECCCCeEEEEeccCCCcEEEEEEcC
Q 005254 600 GLVKLWTVRTGECIATYDKHEDKIWALAVGK 630 (706)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 630 (706)
..++++|+..+.. ..+.. .+.+...+|+|
T Consensus 404 ~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 404 PKLYTVDLTGRNE-REVPT-PGDASDPAWSP 432 (435)
T ss_pred ceEEEEECCCCce-EEccC-CCCccCcccCC
Confidence 2578888866554 34432 44566667766
No 248
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.61 E-value=5.5e-09 Score=110.18 Aligned_cols=507 Identities=14% Similarity=0.133 Sum_probs=273.5
Q ss_pred ceEEcCCCCEEEEee-CCeEEEE----EccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECC--------
Q 005254 24 PLVVSSDGSFIACAC-GESINIV----DLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS-------- 90 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~-~~~i~i~----d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~-------- 90 (706)
++.+-+|..-++++. ++.|.++ +..+... .....-...|.|++||||+..||.++.++++.+-+-.
T Consensus 80 s~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~ 158 (928)
T PF04762_consen 80 SFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVP 158 (928)
T ss_pred EEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEee
Confidence 466777776555554 4577777 5444332 2222234689999999999999999989888876432
Q ss_pred -------C--------CeEEEEeec------------------------cCCCeEEEEECCCCCEEEEecC------CCc
Q 005254 91 -------T--------LKCLRSWKG------------------------HDGPAIGMACHPSGGLLATAGA------DRK 125 (706)
Q Consensus 91 -------~--------~~~~~~~~~------------------------~~~~v~~~~~s~~~~~l~~~~~------d~~ 125 (706)
. |+.-..|+| +...-..++|-.||+|+|+.+. -+.
T Consensus 159 l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~ 238 (928)
T PF04762_consen 159 LDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRV 238 (928)
T ss_pred cCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeE
Confidence 0 111111211 2224457899999999999763 257
Q ss_pred EEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec---CCeEEEEECCCCeeEEEe----ecccceEEEEEEec
Q 005254 126 VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD---DATVRVWDLLAKKCVATL----DKHFSRVTSMAITS 198 (706)
Q Consensus 126 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~----~~~~~~v~~~~~~~ 198 (706)
++||+-+ |.+...-..-.+--.+++|-|.|+. +++... ...|.+|.- +|-.-..+ ......|..+.|++
T Consensus 239 iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~l--IA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 239 IRVYSRE-GELQSTSEPVDGLEGALSWRPSGNL--IASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNS 314 (928)
T ss_pred EEEECCC-ceEEeccccCCCccCCccCCCCCCE--EEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECC
Confidence 9999976 6655544444555578999998873 555543 356777764 44333333 23456899999999
Q ss_pred CCCEEEEEeCCCEEEEEeCCCCcce--eeecC--cceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCC
Q 005254 199 DGSTLISAGRDKVVNLWDLRDYSCK--LTVPT--YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 274 (706)
Q Consensus 199 ~~~~l~~~~~dg~i~~w~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (706)
|+..|+....|. |.+|-..+..-- +.+.. ......
T Consensus 315 ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~---------------------------------------- 353 (928)
T PF04762_consen 315 DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNF---------------------------------------- 353 (928)
T ss_pred CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCc----------------------------------------
Confidence 999999987666 999987765421 11111 111111
Q ss_pred eEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCC-CeeEEEeeCCceEEEEeeeccccceeeEEeeEecccC
Q 005254 275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN-QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 353 (706)
Q Consensus 275 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (706)
+.+.|.. ..+.+.+.++.+..++..-.....
T Consensus 354 -----------------------------------~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s------------- 385 (928)
T PF04762_consen 354 -----------------------------------VKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS------------- 385 (928)
T ss_pred -----------------------------------eEECCCCCCEEEEEecCCcEEEEEEEEEEEec-------------
Confidence 2233322 224444444555444332210000
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC-----ceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeC
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 428 (706)
-...+.+...+++... ..+.+-.+.. +.....+.. ..++..++ +.+.+.. +++-..||.+.+|..
T Consensus 386 -----~~~~~~D~g~vaVIDG-~~lllTpf~~a~VPPPMs~~~l~~-~~~v~~va--f~~~~~~-~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 386 -----PGSSPNDNGTVAVIDG-NKLLLTPFRRAVVPPPMSSYELEL-PSPVNDVA--FSPSNSR-FAVLTSDGSLSIYEW 455 (928)
T ss_pred -----CCCCccCceEEEEEeC-CeEEEecccccCCCchHhceEEcC-CCCcEEEE--EeCCCCe-EEEEECCCCEEEEEe
Confidence 0000111112222221 3334333322 112222222 34677776 7777777 888889999999885
Q ss_pred CCceEE--------EEE----------eCCCcCeEEEEEecCCCeEEEEecC---CCeEEEEEecCCCCCCCccccccee
Q 005254 429 ESRCCV--------GVG----------TGHMGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFDGLSDDAEQPMNLKAK 487 (706)
Q Consensus 429 ~~~~~~--------~~~----------~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~ 487 (706)
...... ..+ ......+..++|..+.. +++.... ...+.++++..... ....
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~ 527 (928)
T PF04762_consen 456 DLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDT-LLVLSDSDSNQSKIVLVDIDDSEN-------SASV 527 (928)
T ss_pred cCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCE-EEEEEecCcccceEEEEEeccCCC-------ceeE
Confidence 432211 111 12344577788887765 4443333 36778887743321 1122
Q ss_pred EEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE-EEEEeecCCcEEEEEEccCC--CEEEEecCCCcEEEEE
Q 005254 488 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS-VVTFRGHKRGIWSVEFSPVD--QVVITASGDKTIKIWS 564 (706)
Q Consensus 488 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd 564 (706)
.........+..+...++...++.-..+|.+...+...... +..+......+....+.... ..++.-+..|.+++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~-- 605 (928)
T PF04762_consen 528 ESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA-- 605 (928)
T ss_pred EEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE--
Confidence 22333344455555555555577777789888666544322 22233222222222222222 13333344444433
Q ss_pred cCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC-CCeEEEEecc-----CCCcEEEEEEcCCCCEEEEE
Q 005254 565 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR-TGECIATYDK-----HEDKIWALAVGKKTEMFATG 638 (706)
Q Consensus 565 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~ 638 (706)
++..+ ...++++.+. +.+|+.......+++.++. .-+.+..... +...+..+ ..|..|+++
T Consensus 606 --n~~~l------a~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~V---ERGsriVt~ 672 (928)
T PF04762_consen 606 --NSRLL------ASNCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRV---ERGSRIVTA 672 (928)
T ss_pred --CCEEE------ecCCceEEEE--cCEEEEEecCceEEEEECcCchhhcccccCccccccccccccC---ccCCEEEEE
Confidence 22222 2456666664 4588888888889999987 2222221111 11122332 357778877
Q ss_pred eCCCcEEEEECCchhHHHH
Q 005254 639 GSDALVNLWHDSTAAEREE 657 (706)
Q Consensus 639 ~~dg~i~vw~~~~~~~~~~ 657 (706)
-....=.|-.++.|..+..
T Consensus 673 vp~~~~vVLQmPRGNLEtI 691 (928)
T PF04762_consen 673 VPSDTSVVLQMPRGNLETI 691 (928)
T ss_pred eCCCceEEEEcCCCchhhh
Confidence 6555555667776665543
No 249
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3.4e-13 Score=132.51 Aligned_cols=215 Identities=14% Similarity=0.064 Sum_probs=144.2
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecC--CCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS--DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
..|.+||..... ...+..+...+.+.+|+|+++.++++... +..|.+|++..+. ...+........
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-----------~~~l~~~~g~~~ 251 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-----------RELVASFRGING 251 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC-----------EEEeccCCCCcc
Confidence 358889986443 34455667789999999999844444322 3468999987652 122222333455
Q ss_pred EEEEcCCCCEEEE-eeCCC--cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CCc--EEEEEcCCCceEE
Q 005254 499 SLAVAPNDSLVCT-GSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKT--IKIWSISDGSCLK 572 (706)
Q Consensus 499 ~~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~--i~iwd~~~~~~~~ 572 (706)
+.+|+|||+.++. .+.+| .|++||+.+++.. .+..+.......+|+|||+.|+..+. +|. |+++|+.+++...
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER 330 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 7899999987764 45555 5999999887643 44445555677899999998887654 444 7777776665433
Q ss_pred EEeecccCEEEEEEEeCCCEEEEEeCCC---CEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CcEEE
Q 005254 573 TFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD---ALVNL 646 (706)
Q Consensus 573 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~v 646 (706)
+..+.......+|+|||++|+..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.+
T Consensus 331 -lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~ 407 (433)
T PRK04922 331 -LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAA 407 (433)
T ss_pred -eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 222333445689999999998765443 6999999888765 332 22234567899999988866653 45777
Q ss_pred EECCc
Q 005254 647 WHDST 651 (706)
Q Consensus 647 w~~~~ 651 (706)
+++..
T Consensus 408 ~~~~g 412 (433)
T PRK04922 408 VSTDG 412 (433)
T ss_pred EECCC
Confidence 77754
No 250
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.7e-13 Score=132.56 Aligned_cols=206 Identities=12% Similarity=0.062 Sum_probs=135.1
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC--CeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
..+.++|.. +.....+..+...+.+.+|+|+|+.++++...+ ..|.+||+..+. ...+........
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-----------~~~l~~~~g~~~ 243 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-----------RRVVANFKGSNS 243 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-----------EEEeecCCCCcc
Confidence 357777764 333344456777899999999998444443333 469999987652 122222334567
Q ss_pred EEEEcCCCCEEEE-eeCCCcEEEEe--CCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CCcEEEEEc--CCCceEE
Q 005254 499 SLAVAPNDSLVCT-GSQDRTACVWR--LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSI--SDGSCLK 572 (706)
Q Consensus 499 ~~~~s~~~~~l~~-~~~dg~i~i~d--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~--~~~~~~~ 572 (706)
..+|+|||+.|+. .+.+|...||. +..+. ...+..+........|+|||+.|+..+. +|...+|.+ .+++..
T Consensus 244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~- 321 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ- 321 (427)
T ss_pred ceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-
Confidence 8999999998874 56777766654 44443 4445545555677899999998876554 455666654 444432
Q ss_pred EEeecccCEEEEEEEeCCCEEEEEeCCC---CEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 005254 573 TFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 573 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 642 (706)
.+..+........|+|||++|+..+.++ .|.+||+.+++....... .......|+|||++|+.++.++
T Consensus 322 ~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 322 RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecC
Confidence 2222223344678999999998877654 599999988875433322 2346789999999988766544
No 251
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.58 E-value=5.9e-13 Score=114.02 Aligned_cols=237 Identities=16% Similarity=0.213 Sum_probs=148.0
Q ss_pred CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce-E--EEEEeC-----CCcCeEEEEEecCCCeEEEEecCCCe
Q 005254 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-C--VGVGTG-----HMGAVGAVAFSKKLQNFLVSGSSDHT 465 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~--~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d~~ 465 (706)
.|.-.+.++. +.++... ++ ..+|-+|.+|+++-.. . +..+++ -..-|++..|+|...++++-.+..|+
T Consensus 162 aHtyhiNSIS--~NsD~Et-~l-SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt 237 (433)
T KOG1354|consen 162 AHTYHINSIS--VNSDKET-FL-SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT 237 (433)
T ss_pred cceeEeeeee--ecCccce-Ee-eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence 4666677776 6666665 33 3457788899876322 1 111222 24568889999988889999999999
Q ss_pred EEEEEecCCCC------CCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeC-CCccEEEEEeecCC-
Q 005254 466 IKVWSFDGLSD------DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL-PDLVSVVTFRGHKR- 537 (706)
Q Consensus 466 i~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~- 537 (706)
|++.|++.... ..+.+........+...-..|..+.|+++|+++++-+. -+|++||+ ...+++.+++-|..
T Consensus 238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~l 316 (433)
T KOG1354|consen 238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYL 316 (433)
T ss_pred EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhH
Confidence 99999984321 11111111222233344467889999999999998754 57999999 56677777766532
Q ss_pred -----------cE---EEEEEccCCCEEEEecCCCcEEEEEcCCCceE-EEEeecccC--EEEEEEEeCCCEEEEEeCCC
Q 005254 538 -----------GI---WSVEFSPVDQVVITASGDKTIKIWSISDGSCL-KTFEGHTSS--VLRASFLTRGAQIVSCGADG 600 (706)
Q Consensus 538 -----------~v---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~--i~~~~~s~~~~~l~~~~~dg 600 (706)
.| ..++|+.++.++++|+....++++++..|... .++...... ...+ ..-+.+.+++...
T Consensus 317 r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~ 393 (433)
T KOG1354|consen 317 RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRK 393 (433)
T ss_pred HHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCcc
Confidence 22 45789999999999999999999997666432 233322221 1111 1112344444443
Q ss_pred CEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005254 601 LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647 (706)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 647 (706)
...+| +..+ .....+...+|+|..+.++.+...+ +.++
T Consensus 394 ~~~~~-------vd~l-df~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 394 RDEIS-------VDAL-DFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred ccccc-------cchh-hhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 32221 1111 2234567788999999888777554 5554
No 252
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.58 E-value=1.8e-10 Score=103.69 Aligned_cols=438 Identities=14% Similarity=0.124 Sum_probs=240.8
Q ss_pred cCCCeEEEEECCC--CCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEE-------EecCCeEE
Q 005254 101 HDGPAIGMACHPS--GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS-------GSDDATVR 171 (706)
Q Consensus 101 ~~~~v~~~~~s~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-------~~~dg~i~ 171 (706)
|.-.....-..|| |..+...+.|- +..+++.+|+... +..|-+.|+...|+|+|.. ++. +..-+.+.
T Consensus 35 h~~cM~n~~l~PDI~GD~IiFt~~Dd-lWe~slk~g~~~r-itS~lGVvnn~kf~pdGrk--vaf~rv~~~ss~~taDly 110 (668)
T COG4946 35 HEFCMKNYYLNPDIYGDRIIFTCCDD-LWEYSLKDGKPLR-ITSGLGVVNNPKFSPDGRK--VAFSRVMLGSSLQTADLY 110 (668)
T ss_pred hhhhhhhhhcCCcccCcEEEEEechH-HHHhhhccCCeeE-EecccceeccccCCCCCcE--EEEEEEEecCCCccccEE
Confidence 3333334445664 44444444333 5556677787554 4558899999999999886 333 23345688
Q ss_pred EEECCCCeeEEEeecccceEEE-EEEecCCCEEEEEeCCCEEE----EEeCCCCcc-eeeecCcceeeeEEeeCCCCCcc
Q 005254 172 VWDLLAKKCVATLDKHFSRVTS-MAITSDGSTLISAGRDKVVN----LWDLRDYSC-KLTVPTYEMVEAVCAIPPGSAFD 245 (706)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~----~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 245 (706)
+.+.+.|+..+..-- ....+. .-|.|||+.+++...-.-.. +|.+..... ...++... ...+ ...++ ...
T Consensus 111 ~v~~e~Ge~kRiTyf-Gr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGp-athi-v~~dg-~iv 186 (668)
T COG4946 111 VVPSEDGEAKRITYF-GRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGP-ATHI-VIKDG-IIV 186 (668)
T ss_pred EEeCCCCcEEEEEEe-ccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCc-eeeE-EEeCC-EEE
Confidence 888888876543222 233333 45899999888765433222 222221111 11111111 1111 11122 111
Q ss_pred cccccccchhhhccccccceEEEEecCCC--eEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEe
Q 005254 246 SFLSSYNQQTIKKKRRSLEIHFITVGERG--IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 323 (706)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 323 (706)
.....+....+...+......+..+...| .-++.|+++. +++-.+ -.++..+...
T Consensus 187 igRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~----------------------vS~PmI-V~~RvYFlsD 243 (668)
T COG4946 187 IGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGN----------------------VSSPMI-VGERVYFLSD 243 (668)
T ss_pred EccCcccCcccccccCCccceEEEEecCCcceeeeeecCCC----------------------cCCceE-EcceEEEEec
Confidence 11112222223333333333333322222 2233333322 111111 1111122222
Q ss_pred eCC--ceEEEEeeeccccceeeEEeeEecccCcee-eEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeC---C--
Q 005254 324 ADQ--QLLLYTTVEVPEKKMELILSKRLVGYNEEI-LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG---H-- 395 (706)
Q Consensus 324 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~---~-- 395 (706)
-+| +++--++.... +..|..-- .-..-.+.+++.++.. ..|.|++||..+......--+ .
T Consensus 244 ~eG~GnlYSvdldGkD-----------lrrHTnFtdYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk 311 (668)
T COG4946 244 HEGVGNLYSVDLDGKD-----------LRRHTNFTDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRK 311 (668)
T ss_pred ccCccceEEeccCCch-----------hhhcCCchhccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccc
Confidence 233 33333332221 11111000 0001112355555443 448999999987655432111 0
Q ss_pred -cc-----eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC-eEEE
Q 005254 396 -SE-----IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIKV 468 (706)
Q Consensus 396 -~~-----~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~i 468 (706)
.. +..-+.-....++.. ++..+ .|...+.+...+-.++. ++.+.|.-..+..++. -++.|..|| .+-+
T Consensus 312 ~k~~k~~~pskyledfa~~~Gd~-ia~VS-RGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e-~~vigt~dgD~l~i 386 (668)
T COG4946 312 KKQPKFVNPSKYLEDFAVVNGDY-IALVS-RGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPE-GDVIGTNDGDKLGI 386 (668)
T ss_pred cccccccCHHHhhhhhccCCCcE-EEEEe-cCcEEEECCCCCeeEEc--CCCCceEEEEEccCCc-ceEEeccCCceEEE
Confidence 00 111111001123333 44444 56677777666655543 4566688877777766 688888888 9999
Q ss_pred EEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCC
Q 005254 469 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548 (706)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 548 (706)
+|...+ ........-+.|.++..+++|++++++.....+.+.|+.++.....-+...+-|+.++|+|++
T Consensus 387 yd~~~~-----------e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~ns 455 (668)
T COG4946 387 YDKDGG-----------EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNS 455 (668)
T ss_pred EecCCc-----------eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCc
Confidence 999876 455566667889999999999999999999999999999998877777778889999999999
Q ss_pred CEEEEecCCC----cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeC
Q 005254 549 QVVITASGDK----TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 549 ~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 598 (706)
+++|-+.-+| .|+++|+..++....-. ..+-=.+-+|.||+++|..-+.
T Consensus 456 r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 456 RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 9999987766 59999998777654432 2233345588999998866553
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.57 E-value=1.9e-13 Score=117.03 Aligned_cols=246 Identities=15% Similarity=0.266 Sum_probs=171.0
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC-ceeeEeee-CCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
....+.++.+.+.+....| .+.-++..+.|..+++|--.. ++.-..+. .-..+++++. +.++... |++|-..|+
T Consensus 16 ll~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~--y~~e~~~-L~vg~~ngt 91 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAME--YVSESRR-LYVGQDNGT 91 (404)
T ss_pred hhhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEee--eeccceE-EEEEEecce
Confidence 3455566666666666665 556678888899999996443 33222221 1233455555 6666666 899999999
Q ss_pred EEEEeC----CCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 423 VRLWDS----ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 423 i~i~d~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
+.-+.+ +.....+....|...+..+-|+.... .+++.+.|..+.---.+.+... ....+. ...+
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~l--------g~Y~~~---~~~t 159 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRL--------GGYNFE---TPAS 159 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcc--------cceEee---ccCC
Confidence 988854 44556666778999999999988755 7888888876653333322100 000010 0111
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeC--CCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce-EEEEe
Q 005254 499 SLAVAPNDSLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC-LKTFE 575 (706)
Q Consensus 499 ~~~~s~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~ 575 (706)
++.+.-. +...|...|.|..-.+ ....++.++.+|.+++++++|.|....|.+|..|..+.+||+.-.+- ..++.
T Consensus 160 ~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~ 237 (404)
T KOG1409|consen 160 ALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ 237 (404)
T ss_pred CCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeec
Confidence 1111111 5566767777666554 34578889999999999999999999999999999999999965433 45777
Q ss_pred ecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 576 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 576 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
+|...|..+...+--+.|++++.||.|.+|+.+
T Consensus 238 gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 238 GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred cchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 899999999988888999999999999999985
No 254
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.1e-11 Score=115.34 Aligned_cols=522 Identities=13% Similarity=0.155 Sum_probs=296.4
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCC---------------eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEE
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNA---------------SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~---------------~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~i 86 (706)
.+++|.....++|+|+.+ .+.+..+.+. ..-++|+||.+.|.-+.|..+.+.|-+...+|.|.+
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV 97 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence 379999999999999876 5666655432 123678999999999999999999999999999999
Q ss_pred EECCCCeEEEEee--ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE-EeeCCCCcEEEEEEcCCCCceEEEE
Q 005254 87 WDLSTLKCLRSWK--GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH-YFKGHKGVVSSILFHPDTDKSLLFS 163 (706)
Q Consensus 87 wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~ 163 (706)
|-+-.|.-...+. ..+..|.+++|+.||..++..-.||.|.+=.++..+.-. .++ ......+.|++|.+. ++.
T Consensus 98 WmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~--~Lf 173 (1189)
T KOG2041|consen 98 WMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQ--ALF 173 (1189)
T ss_pred EeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHH--HHh
Confidence 9998776443332 245788999999999999999999999998887654321 122 223457889998776 777
Q ss_pred EecCCeEEEEECCCCe-------eEE----EeecccceEEEEEEe--------cCCCEEEEEeCCCEEEEEeCCCCccee
Q 005254 164 GSDDATVRVWDLLAKK-------CVA----TLDKHFSRVTSMAIT--------SDGSTLISAGRDKVVNLWDLRDYSCKL 224 (706)
Q Consensus 164 ~~~dg~i~vwd~~~~~-------~~~----~~~~~~~~v~~~~~~--------~~~~~l~~~~~dg~i~~w~~~~~~~~~ 224 (706)
+-.+|.+.++|.+..- +.- .+......+..+.|. |+...|+++...|.+.+-.-.+.....
T Consensus 174 ~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv 253 (1189)
T KOG2041|consen 174 KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV 253 (1189)
T ss_pred hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence 7788999999975321 111 111112235556663 477889999999998887665555444
Q ss_pred eecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCC---------CeEEEEECCCCeEEeeccCccc
Q 005254 225 TVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER---------GIVRMWNADSACLYEQKSSDVT 295 (706)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~~~~~~~~ 295 (706)
.+.....+....+.++|.. ++.+|.+ +.|.++..-..
T Consensus 254 v~dtgm~~vgakWnh~G~v-----------------------LAvcG~~~da~~~~d~n~v~Fysp~G~----------- 299 (1189)
T KOG2041|consen 254 VVDTGMKIVGAKWNHNGAV-----------------------LAVCGNDSDADEPTDSNKVHFYSPYGH----------- 299 (1189)
T ss_pred EEecccEeecceecCCCcE-----------------------EEEccCcccccCccccceEEEeccchh-----------
Confidence 4555566777778888763 2222221 12222221111
Q ss_pred cccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecc-------------------ccceeeEEeeE---ecccC
Q 005254 296 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP-------------------EKKMELILSKR---LVGYN 353 (706)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~---~~~~~ 353 (706)
..-....+...++++++-..+-.++ ...++.+++-++.+.- ........... ....-
T Consensus 300 i~gtlkvpg~~It~lsWEg~gLriA-~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V 378 (1189)
T KOG2041|consen 300 IVGTLKVPGSCITGLSWEGTGLRIA-IAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTV 378 (1189)
T ss_pred heEEEecCCceeeeeEEcCCceEEE-EEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhh
Confidence 1111223344455555544443332 3334444443333211 00000000000 00000
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeC-CCceeeEeeeC-------CcceEEEeeeeeecCCCEEEEEeeCCCcEEE
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLAG-------HSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~-~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (706)
....++++.. +.-.++.-..++.+.-++. ++......+.- -....+.+.-+|..-++..++.++. ..+.+
T Consensus 379 ~~~~~~a~~~-ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~-e~~~i 456 (1189)
T KOG2041|consen 379 THFENMAFYR-EHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASE-ERYFI 456 (1189)
T ss_pred cceeehheec-ccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEecc-ccEEE
Confidence 1111222221 1122333333333333311 11111111110 0011111211122222332444443 35666
Q ss_pred EeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 426 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 426 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
|.....+....+.+-..... -.|+-| ...+|+.|+.+.- ......+...+|.+++.+
T Consensus 457 Why~~pK~~s~l~~~k~rke-gr~h~D---dtp~ga~d~~l~y-----------------s~kt~~G~~DpICAl~~s-- 513 (1189)
T KOG2041|consen 457 WHYVLPKFNSVLAGVKIRKE-GRFHGD---DTPEGAQDRTLEY-----------------STKTLLGSKDPICALCIS-- 513 (1189)
T ss_pred EEEeccchhhhhhhhhhccc-ccccCC---CCccchhhceeec-----------------cceeeccCCCcceeeeec--
Confidence 76554433222211000000 002211 1222333332211 223455667788888876
Q ss_pred CCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC---CCceEE-EEeecccCE
Q 005254 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS---DGSCLK-TFEGHTSSV 581 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~---~~~~~~-~~~~~~~~i 581 (706)
.++|.++-..|.|.-|.+.+........ -+..+..++.+-+...+|.-.--|.+.+.|+. ++..+. .+......|
T Consensus 514 dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDV 592 (1189)
T KOG2041|consen 514 DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDV 592 (1189)
T ss_pred ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhh
Confidence 5689999999999999998876665544 45678899998888889998888999998886 344444 334455679
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
..+.|..|+..|+.--+...++|++-.+
T Consensus 593 Wd~~Wa~dNp~llAlmeKtrmyifrgnd 620 (1189)
T KOG2041|consen 593 WDYEWAQDNPNLLALMEKTRMYIFRGND 620 (1189)
T ss_pred hhhhhccCCchHHhhhhhceEEEecCcC
Confidence 9999999888777766667778876543
No 255
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.56 E-value=4.6e-10 Score=106.61 Aligned_cols=291 Identities=14% Similarity=0.149 Sum_probs=178.6
Q ss_pred CceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEec----CCcEEEEeCCCc--ee--eEeeeCCcc
Q 005254 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN----IEQVQVYDLSSM--SC--SYVLAGHSE 397 (706)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----~~~i~~~d~~~~--~~--~~~~~~~~~ 397 (706)
+.|+.|.+...... +..... ........-+++.+ ++++|.+... .+.|..|++... .. +........
T Consensus 13 ~gI~~~~~d~~~g~---l~~~~~-~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 13 GGIYVFRFDEETGT---LTLVQT-VAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp TEEEEEEEETTTTE---EEEEEE-EEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred CcEEEEEEcCCCCC---ceEeee-ecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 57777777433321 211122 22334445566666 5555555554 578888887754 32 223332233
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC-ceEEEE---Ee----------CCCcCeEEEEEecCCCeEEEEecCC
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGV---GT----------GHMGAVGAVAFSKKLQNFLVSGSSD 463 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~l~~~~~d 463 (706)
....+. ..++++.++++...+|.+.++++.. +..... .. .......++.++|+++.++++.-..
T Consensus 88 ~p~~i~--~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 88 SPCHIA--VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp CEEEEE--ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CcEEEE--EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 333444 7899999777777899999999986 433322 11 2345678899999999666666667
Q ss_pred CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CCCcEEEEeCC--Ccc--EEEEEeec---
Q 005254 464 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLP--DLV--SVVTFRGH--- 535 (706)
Q Consensus 464 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~~--- 535 (706)
..|.+|+++....... . ..............++|+|+++++++.. .++.|.++++. ++. .+..+...
T Consensus 166 D~v~~~~~~~~~~~l~----~-~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLT----P-VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp TEEEEEEE-TTS-TEE----E-EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred CEEEEEEEeCCCceEE----E-eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 7899999976532110 0 1222334566789999999999887665 46779999987 332 22222211
Q ss_pred ---CCcEEEEEEccCCCEEEEec-CCCcEEEEEcC--CCce--EEEEeecccCEEEEEEEeCCCEEEEEeC-CCCEEEEE
Q 005254 536 ---KRGIWSVEFSPVDQVVITAS-GDKTIKIWSIS--DGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWT 606 (706)
Q Consensus 536 ---~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd 606 (706)
......++++|||++|+++. .++.|.+|++. ++++ +..+.......+.+.++|+|++|+++.. ++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 12578899999999987765 46789999993 2333 3444434455899999999999988874 56899886
Q ss_pred C--CCCeEEEEec-cCCCcEEEEEE
Q 005254 607 V--RTGECIATYD-KHEDKIWALAV 628 (706)
Q Consensus 607 ~--~~~~~~~~~~-~~~~~v~~~~~ 628 (706)
+ .+|.+...-. ..-....||.|
T Consensus 321 ~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 321 IDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EeCCCCcEEEecccccCCCCEEEeC
Confidence 6 5777544432 22344556655
No 256
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.56 E-value=3e-10 Score=107.83 Aligned_cols=221 Identities=14% Similarity=0.142 Sum_probs=136.5
Q ss_pred EeeEeCCCCcEEEEEecCCcEEEEeCCC-ceeeEe---ee----------CCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 358 DLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYV---LA----------GHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~~i~~~d~~~-~~~~~~---~~----------~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
.+++.++...++++...+|.+.++++.. +..... +. .......++. +.|+++.++++.-....|
T Consensus 91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~--~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV--FSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE--E-TTSSEEEEEETTTTEE
T ss_pred EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEE--ECCCCCEEEEEecCCCEE
Confidence 3444443333444444678888888876 332221 11 1122344555 889999877766666789
Q ss_pred EEEeCCCce--EE--EEE-eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee------
Q 005254 424 RLWDSESRC--CV--GVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA------ 492 (706)
Q Consensus 424 ~i~d~~~~~--~~--~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~------ 492 (706)
.+|++.... .. ..+ .......+.++|+|+++.+.++...++.|.++++..... ..........
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g------~~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG------SLTEIQTISTLPEGFT 242 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT------EEEEEEEEESCETTSC
T ss_pred EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC------ceeEEEEeeecccccc
Confidence 999987654 21 122 245567889999999997777888899999999983321 1111111111
Q ss_pred cCcceEEEEEcCCCCEEEEee-CCCcEEEEeCC--Cc--cEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEc-
Q 005254 493 HGKDINSLAVAPNDSLVCTGS-QDRTACVWRLP--DL--VSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSI- 565 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~--~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~- 565 (706)
.......++++|||++|+++. ..+.|.+|++. ++ +.+..+.........++++|+|++|+++. .++.|.+|++
T Consensus 243 ~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 112578899999999988766 45679999983 23 33444444455589999999999998876 5678999976
Q ss_pred -CCCceEEEEe-ecccCEEEEEE
Q 005254 566 -SDGSCLKTFE-GHTSSVLRASF 586 (706)
Q Consensus 566 -~~~~~~~~~~-~~~~~i~~~~~ 586 (706)
.+|.+...-. ..-....|+.|
T Consensus 323 ~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 323 PDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCCcEEEecccccCCCCEEEeC
Confidence 4665544332 23345566665
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.56 E-value=3.5e-13 Score=124.48 Aligned_cols=212 Identities=11% Similarity=0.171 Sum_probs=164.2
Q ss_pred CCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE
Q 005254 410 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (706)
Q Consensus 410 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 489 (706)
...+++....||.+++|+..+++....+.+. +..+..++-..|.+..... +.......
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~-----------------~~~s~t~~~~~w~L~~~~s----~~k~~~~~- 61 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPI-----------------ASLSGTCTYTKWGLSADYS----PMKWLSLE- 61 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccc-----------------hhccCcceeEEEEEEeccc----hHHHHhHH-
Confidence 3345888999999999999998877665421 1222233344454432210 00100000
Q ss_pred EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe--ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC
Q 005254 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 567 (706)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 567 (706)
.....+.|-..++-|...|.|.+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+...
T Consensus 62 --------~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~ 133 (541)
T KOG4547|consen 62 --------KAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE 133 (541)
T ss_pred --------HHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence 011223456688889999999999999999988877 4999999999999999999999999999999999
Q ss_pred CceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCC-----CCEEEE-EeCC
Q 005254 568 GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK-----TEMFAT-GGSD 641 (706)
Q Consensus 568 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~-~~~d 641 (706)
.+.++.+......+.+++.+|||..|++++ +.|++||+.+++.+..+.+|.++|.+++|.-+ |.++++ ...+
T Consensus 134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 134 KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccc
Confidence 999999999889999999999999999886 67999999999999999999999999999877 666664 4556
Q ss_pred CcEEEEECCchh
Q 005254 642 ALVNLWHDSTAA 653 (706)
Q Consensus 642 g~i~vw~~~~~~ 653 (706)
.-+.+|-+....
T Consensus 212 r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 212 RGITVWVVEKED 223 (541)
T ss_pred cceeEEEEEccc
Confidence 778999887643
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.54 E-value=4.2e-13 Score=114.94 Aligned_cols=257 Identities=21% Similarity=0.316 Sum_probs=178.1
Q ss_pred cceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce-----EEEEEeCCC------------cCeEEEEEecCCC-eEE
Q 005254 396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-----CVGVGTGHM------------GAVGAVAFSKKLQ-NFL 457 (706)
Q Consensus 396 ~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~-~~l 457 (706)
...+.++. +...|.. |++|..+|+|.++.-.... ....++.|. ..|..+.|.+++. ..+
T Consensus 25 adiis~ve--f~~~Ge~-LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVE--FDHYGER-LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEE--eecccce-EeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 34566777 8888888 9999999999999654322 222333332 3577788877654 356
Q ss_pred EEecCCCeEEEEEecCCCCCCC--------ccc---c---------------cceeEEEeecCcceEEEEEcCCCCEEEE
Q 005254 458 VSGSSDHTIKVWSFDGLSDDAE--------QPM---N---------------LKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 458 ~~~~~d~~i~i~~~~~~~~~~~--------~~~---~---------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (706)
+..+.|.+|++|.+........ .+. . ........+|...|.++.++.|+..+++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 7778899999999875432210 000 0 0011122457778999999999999988
Q ss_pred eeCCCcEEEEeCCCcc---EEEEEeecC-----CcEEEEEEccC-CCEEEEecCCCcEEEEEcCCCceE----EEEe---
Q 005254 512 GSQDRTACVWRLPDLV---SVVTFRGHK-----RGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCL----KTFE--- 575 (706)
Q Consensus 512 ~~~dg~i~i~d~~~~~---~~~~~~~~~-----~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~----~~~~--- 575 (706)
+. |-.|.+|++.--. .+..++++. .-|++..|+|. .+.++-.+..|+|++-|++...+- +.+.
T Consensus 182 AD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 AD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred cc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 75 6789999986432 233344443 34889999995 567888889999999999743221 1111
Q ss_pred ---------ecccCEEEEEEEeCCCEEEEEeCCCCEEEEEC-CCCeEEEEeccCC------------Cc---EEEEEEcC
Q 005254 576 ---------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTV-RTGECIATYDKHE------------DK---IWALAVGK 630 (706)
Q Consensus 576 ---------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~------------~~---v~~~~~s~ 630 (706)
.--..|..+.|+++|+|+++-+. -+|++||+ ...+++.+++.|. +. -..++|+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 11246888999999999998644 68999999 5667777776553 22 24688999
Q ss_pred CCCEEEEEeCCCcEEEEECCchhHHHH
Q 005254 631 KTEMFATGGSDALVNLWHDSTAAEREE 657 (706)
Q Consensus 631 ~~~~l~~~~~dg~i~vw~~~~~~~~~~ 657 (706)
++.+++||+....++++++..+..+..
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gsk~d~ 366 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGSKEDF 366 (433)
T ss_pred CcceEecccccceEEEecCCCCcceee
Confidence 999999999999999999877765443
No 259
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.53 E-value=9.2e-11 Score=114.02 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=115.7
Q ss_pred CCEEEEee-CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEE-E
Q 005254 31 GSFIACAC-GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIG-M 108 (706)
Q Consensus 31 g~~l~~~~-~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-~ 108 (706)
+..+++++ ++.++-+|..+|+.+-..+.........+. ++..++.++.++.+..+|.++|+.+...... ..+.+ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 34455554 458999999999987655443322222222 4677888888999999999999998876643 22221 1
Q ss_pred EECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEE-----EEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEE
Q 005254 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVS-----SILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183 (706)
Q Consensus 109 ~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 183 (706)
.. .+..++.++.++.|..||.++|+.+..+........ ..... + + .++.+..+|.+..+|.++|+.+..
T Consensus 142 ~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~--~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 142 LV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-G--GVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-C--EEEEECCCCEEEEEEccCCCEeee
Confidence 12 345677777899999999999998877654332211 11111 2 2 377788889999999999987654
Q ss_pred eecccc----eE---EEEEEec--CCCEEEEEeCCCEEEEEeCCCCccee
Q 005254 184 LDKHFS----RV---TSMAITS--DGSTLISAGRDKVVNLWDLRDYSCKL 224 (706)
Q Consensus 184 ~~~~~~----~v---~~~~~~~--~~~~l~~~~~dg~i~~w~~~~~~~~~ 224 (706)
...... .+ ..+.-+| .+..+++++.+|.++.||.++++.+.
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW 265 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE
Confidence 321100 00 0000011 24467777778888888877665443
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=6e-12 Score=122.21 Aligned_cols=199 Identities=20% Similarity=0.121 Sum_probs=129.2
Q ss_pred ceEEcCCCCE--EEEeeC----CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec-----cCeEEEEECCCC
Q 005254 24 PLVVSSDGSF--IACACG----ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH-----SREIRVWDLSTL 92 (706)
Q Consensus 24 ~~~~s~dg~~--l~~~~~----~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~-----d~~i~iwd~~~~ 92 (706)
.-+|||||+. +++.+. ..|++.++.+++... +....+.....+|||||+.||..+. +-.+.+|++.++
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g 267 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETG 267 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccC
Confidence 4589999986 333332 269999998887543 3334445567899999999886543 223455777653
Q ss_pred ---eEEEEeeccCCCeEEEEECCCCCEEEEec-CCCc--EEEEECCC-CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe
Q 005254 93 ---KCLRSWKGHDGPAIGMACHPSGGLLATAG-ADRK--VLVWDVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 93 ---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~--i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 165 (706)
+.......+.......+|||||+.|+..+ .++. |.++++.. +.....+..+...+....|+|||+. ++..+
T Consensus 268 ~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~--Laf~~ 345 (428)
T PRK01029 268 AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK--IAFCS 345 (428)
T ss_pred CCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE--EEEEE
Confidence 33333333334456789999999888765 3554 44445542 3334445555567788999999886 44433
Q ss_pred c---CCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC---CCEEEEEeCCCCcceeee
Q 005254 166 D---DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR---DKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 166 ~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~ 226 (706)
. ...|.+||+.+++... +......+....|+|||+.|+.... ...|.++++..++.....
T Consensus 346 ~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 346 VIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred cCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 2 2479999998887644 3333345678899999998876543 357888998877654433
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.5e-11 Score=112.59 Aligned_cols=178 Identities=12% Similarity=0.120 Sum_probs=129.9
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec-----------cCeEEEEECCCC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH-----------SREIRVWDLSTL 92 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~-----------d~~i~iwd~~~~ 92 (706)
-+.|||-|.||++-....|.+|--++-..++.+. |. .|.-+.|||+.+||++-+. ...++|||+.+|
T Consensus 215 yv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eEEecCCceEEEEEeccceeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 5889999999999999999999876666666664 53 5789999999999998642 257999999999
Q ss_pred eEEEEeeccCC--Ce-EEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec---
Q 005254 93 KCLRSWKGHDG--PA-IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD--- 166 (706)
Q Consensus 93 ~~~~~~~~~~~--~v-~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--- 166 (706)
.+.+.|..... .+ .-+.||.|++|+|-... .+|.||+..+-.++..-.-.-..|....|+|.+.. ||--..
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~l--lAYwtpe~~ 369 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNL--LAYWTPETN 369 (698)
T ss_pred chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcce--EEEEccccc
Confidence 99998876322 22 34689999999998776 55999998775444333334567889999998653 332211
Q ss_pred --CCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEE
Q 005254 167 --DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA 206 (706)
Q Consensus 167 --dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 206 (706)
-..+.+-.+.+++.+++-.-+.-.=..|.|-.+|.+|+.-
T Consensus 370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred CCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEE
Confidence 2346666777777777666555445567777888887754
No 262
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.51 E-value=2.9e-12 Score=109.94 Aligned_cols=343 Identities=19% Similarity=0.236 Sum_probs=216.1
Q ss_pred CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC-CCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCe
Q 005254 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV-DGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (706)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 169 (706)
..+++.++||...++....-|-..-+.+.+.|.+++||-- ++++--..+. ....+++++.+.++... |+.|-..|+
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~--L~vg~~ngt 91 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRR--LYVGQDNGT 91 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceE--EEEEEecce
Confidence 3456778899999999999998888999999999999964 3444322222 24567889999887665 999999999
Q ss_pred EEEEECC----CCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcc
Q 005254 170 VRVWDLL----AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD 245 (706)
Q Consensus 170 i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (706)
+.-+.+. .....+....|...+..+-|+.....+++.+.|..+.---.+.+..+........
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~-------------- 157 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP-------------- 157 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc--------------
Confidence 9988653 4455666678999999999998888999999887554333332221111100000
Q ss_pred cccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeC
Q 005254 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (706)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (706)
..
T Consensus 158 -------------------------~t----------------------------------------------------- 159 (404)
T KOG1409|consen 158 -------------------------AS----------------------------------------------------- 159 (404)
T ss_pred -------------------------CC-----------------------------------------------------
Confidence 00
Q ss_pred CceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeC--CCceeeEeeeCCcceEEEee
Q 005254 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL--SSMSCSYVLAGHSEIVLCLD 403 (706)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~--~~~~~~~~~~~~~~~i~~~~ 403 (706)
++.+ +-.+..++...|.+....+ .....+..+.+|.+.+.++.
T Consensus 160 --------------------------------~~~~---d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~ 204 (404)
T KOG1409|consen 160 --------------------------------ALQF---DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLK 204 (404)
T ss_pred --------------------------------CCce---eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEE
Confidence 0000 0002222333343333332 33455668889999999997
Q ss_pred eeeecCCCEEEEEeeCCCcEEEEeCCCceEE-EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccc
Q 005254 404 TCALSSGKILIVTGSKDNSVRLWDSESRCCV-GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482 (706)
Q Consensus 404 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 482 (706)
+.+.... +++|..|..+.+||+..++-+ ..+.+|...|..+...+--+ .+++++.||.|.+|+.+....+..+..
T Consensus 205 --Wd~~~~~-LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r~etpewl 280 (404)
T KOG1409|consen 205 --WDPGQRL-LFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKRVETPEWL 280 (404)
T ss_pred --EcCCCcE-EEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccceeecCcccc
Confidence 6666665 999999999999999866544 45778999999988877655 799999999999999876532221111
Q ss_pred ccceeE--------------------EEee---cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC-------CccEEEEE
Q 005254 483 NLKAKA--------------------VVAA---HGKDINSLAVAPNDSLVCTGSQDRTACVWRLP-------DLVSVVTF 532 (706)
Q Consensus 483 ~~~~~~--------------------~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~-------~~~~~~~~ 532 (706)
...... .... +-+...+..-+.+.....+-+..-.+++-|.- +..++..+
T Consensus 281 ~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~p 360 (404)
T KOG1409|consen 281 DSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIP 360 (404)
T ss_pred ccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccc
Confidence 000000 0000 00111111111121122222222334443321 12334444
Q ss_pred eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC
Q 005254 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 567 (706)
Q Consensus 533 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 567 (706)
..-...|+++.+..+-.+|++++.|..|+|||+++
T Consensus 361 hei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 361 HEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 44456799999998889999999999999999853
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1.1e-11 Score=114.85 Aligned_cols=188 Identities=21% Similarity=0.291 Sum_probs=153.9
Q ss_pred cCCCCEEEEeeCC-eEEEEEccCCeEEEeecCC---CccEEEEEEc------c--------------CCCEEEEEeccCe
Q 005254 28 SSDGSFIACACGE-SINIVDLSNASIKSTIEGG---SDTITALALS------P--------------DDKLLFSSGHSRE 83 (706)
Q Consensus 28 s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~---~~~i~~l~~s------~--------------~~~~l~s~~~d~~ 83 (706)
.|-+.++|...++ .++|||..++++...+..- ++.-++..|. | |-..+|-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3556777877766 8999999999877666432 2333444442 2 3346677788999
Q ss_pred EEEEECCCCeEEEEee--ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEE
Q 005254 84 IRVWDLSTLKCLRSWK--GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLL 161 (706)
Q Consensus 84 i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 161 (706)
|.++++..|+.-..+. .|.+.|.++.++.+-..|.+++.|..+..|+...++.+..+.+....+.+++.+||+.. +
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~--l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKI--L 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCE--E
Confidence 9999999999988886 49999999999999999999999999999999999999999999999999999999775 6
Q ss_pred EEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecC-----CCEEEEE-eCCCEEEEEeCCC
Q 005254 162 FSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD-----GSTLISA-GRDKVVNLWDLRD 219 (706)
Q Consensus 162 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~dg~i~~w~~~~ 219 (706)
++++ ++|++||+++++.+..+.+|.++|.++.|..+ |.+++++ ..+..+.+|-.+.
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6554 68999999999999999999999999999877 6666654 4456677887654
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.8e-11 Score=118.89 Aligned_cols=221 Identities=11% Similarity=0.026 Sum_probs=138.7
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCe--EEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcc
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN--FLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (706)
..|.+.|...+.... +.........-+|+|||+. ++++...+| .|.+.++..+. ...+......
T Consensus 165 ~~l~~~d~dG~~~~~-lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-----------~~~lt~~~g~ 232 (428)
T PRK01029 165 GELWSVDYDGQNLRP-LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-----------GKKILALQGN 232 (428)
T ss_pred ceEEEEcCCCCCceE-cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC-----------ceEeecCCCC
Confidence 357777776554433 3444556677899999875 333454444 46666666542 1222223344
Q ss_pred eEEEEEcCCCCEEEEeeC-CC----cEEEEeCCCc---cEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEE--Ec
Q 005254 497 INSLAVAPNDSLVCTGSQ-DR----TACVWRLPDL---VSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIW--SI 565 (706)
Q Consensus 497 i~~~~~s~~~~~l~~~~~-dg----~i~i~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw--d~ 565 (706)
....+|||||+.|+..+. +| .+.+|++..+ +.......+.......+|+|||+.|+..+ .+|...+| ++
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 556899999998887553 23 3444676642 33333333333446789999999877665 46655555 44
Q ss_pred CC-CceEEEEeecccCEEEEEEEeCCCEEEEEeCC---CCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-
Q 005254 566 SD-GSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS- 640 (706)
Q Consensus 566 ~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 640 (706)
.. +.....+..+...+....|||||++|+..+.+ ..|.+||+.+++..... .....+....|+|||++|+..+.
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECC
Confidence 32 23344444444566788999999999876553 36999999988765433 22345678999999998875433
Q ss_pred --CCcEEEEECCchhH
Q 005254 641 --DALVNLWHDSTAAE 654 (706)
Q Consensus 641 --dg~i~vw~~~~~~~ 654 (706)
...|.+|++..++.
T Consensus 392 ~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 392 SNESELYLISLITKKT 407 (428)
T ss_pred CCCceEEEEECCCCCE
Confidence 35688888876653
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.49 E-value=2.4e-10 Score=111.19 Aligned_cols=306 Identities=16% Similarity=0.091 Sum_probs=180.1
Q ss_pred CCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEE
Q 005254 72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSIL 151 (706)
Q Consensus 72 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~ 151 (706)
+..+++++.++.|.-+|..+|+.+.............+. ++..+++++.++.+..+|.++|+.+...... ..+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 667888888999999999999998877654332222322 4677888888999999999999988765532 2222211
Q ss_pred EcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEE-----EEEEecCCCEEEEEeCCCEEEEEeCCCCcceeee
Q 005254 152 FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVT-----SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
.. .++. ++.++.+|.|..||.++|+.+.........+. +.... + ..++.+..+|.+..+|.++++.+...
T Consensus 142 ~v-~~~~--v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 142 LV-ANGL--VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred EE-ECCE--EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee
Confidence 11 1233 67778899999999999998876644322111 11121 2 46778888899999998887654432
Q ss_pred cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccc
Q 005254 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (706)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (706)
..... .+... .-++.+.
T Consensus 217 ~~~~~--------~g~~~------------------------------~~~~~~~------------------------- 233 (377)
T TIGR03300 217 RVALP--------KGRTE------------------------------LERLVDV------------------------- 233 (377)
T ss_pred ccccC--------CCCCc------------------------------hhhhhcc-------------------------
Confidence 21100 00000 0000000
Q ss_pred eeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
...++ + .+..+.+++.+|.++.+|..++
T Consensus 234 ---------------------------------------------~~~p~----~---~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 234 ---------------------------------------------DGDPV----V---DGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred ---------------------------------------------CCccE----E---ECCEEEEEEcCCEEEEEECCCC
Confidence 00000 0 1234555555677777777777
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC-CcCeEEEEEecCCCeEEEEecCCCe
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAFSKKLQNFLVSGSSDHT 465 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~ 465 (706)
+......... ... ....++. ++.++.+|.+..+|..+++.+...... .....+.... +. .+++++.+|.
T Consensus 262 ~~~W~~~~~~--~~~----p~~~~~~-vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~--g~-~l~~~~~~G~ 331 (377)
T TIGR03300 262 RVLWKRDASS--YQG----PAVDDNR-LYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV--GG-YLVVGDFEGY 331 (377)
T ss_pred cEEEeeccCC--ccC----ceEeCCE-EEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE--CC-EEEEEeCCCE
Confidence 6554443111 111 1223455 677788999999999999877655322 2222222332 23 6888999999
Q ss_pred EEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEE
Q 005254 466 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521 (706)
Q Consensus 466 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 521 (706)
+.++|..+++ .......+...+..--...++ .|++++.||.|+.|
T Consensus 332 l~~~d~~tG~----------~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 332 LHWLSREDGS----------FVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEECCCCC----------EEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 9999987653 333333333222222112233 57788899998876
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.8e-11 Score=118.70 Aligned_cols=235 Identities=14% Similarity=0.078 Sum_probs=148.2
Q ss_pred cEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCC--cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCC
Q 005254 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 377 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (706)
.+.++|....... .+......+.... ++|+++.++++...++ .|++||+.+++.... ....+.....+|+|+|+
T Consensus 199 ~l~i~d~dG~~~~-~l~~~~~~~~~p~--wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYNEQ-MLLRSPEPLMSPA--WSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCCce-EeecCCCcccCce--ECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCC
Confidence 5666676554332 3334455555555 8899998555554444 588889988765433 22233445789999999
Q ss_pred eEEEEecCCCe--EEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CC--cEEEEeCCCccEE
Q 005254 455 NFLVSGSSDHT--IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSV 529 (706)
Q Consensus 455 ~~l~~~~~d~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~ 529 (706)
.++++.+.++. |.++|+..+. ...+..+.......+|+|||+.++..+. ++ .|+++|+.+++..
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 77667777776 5556665432 1222233445577899999998876654 33 4677788777644
Q ss_pred EEEeecCCcEEEEEEccCCCEEEEecCC-C--cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC-C--CEE
Q 005254 530 VTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-G--LVK 603 (706)
Q Consensus 530 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~ 603 (706)
... .........+|+|||++|+..+.+ + .|.++|+.+++... +... .......|+|||++|+..+.+ | .++
T Consensus 344 ~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 344 RLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred EEe-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence 322 122223457899999998776553 3 46667887776532 3222 122245899999998776654 3 377
Q ss_pred EEECCCCeEEEEeccCCCcEEEEEEcC
Q 005254 604 LWTVRTGECIATYDKHEDKIWALAVGK 630 (706)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~v~~~~~s~ 630 (706)
+++. +|+....+..+.+.+...+|+|
T Consensus 421 ~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 421 AVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEC-CCCceEECcCCCCCcCCCccCC
Confidence 7786 6766677766667777888887
No 267
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=4.2e-11 Score=118.51 Aligned_cols=236 Identities=13% Similarity=0.046 Sum_probs=151.0
Q ss_pred cEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC--CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCC
Q 005254 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 377 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (706)
.+.++|...... ..+..+...+.... ++|+++.++++...+ ..|.+||+.+++.... ....+.....+|+|+|+
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~--wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPR--WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeee--ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCC
Confidence 477777765543 34445555666666 889999855555443 3688999988865443 33334556789999998
Q ss_pred eEEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CC--cEEEEeCCCccEE
Q 005254 455 NFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSV 529 (706)
Q Consensus 455 ~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~ 529 (706)
.++++...+| .|.++|+..+. ...+..+........|+|||+.++..+. +| .|+++++.+++..
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~-----------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQ-----------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCC-----------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 6666666665 57777776542 1222233344567789999998876654 33 5777888777643
Q ss_pred EEEeecCCcEEEEEEccCCCEEEEecCC-C--cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC---CCEE
Q 005254 530 VTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLVK 603 (706)
Q Consensus 530 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~ 603 (706)
.... .........|+|+|+.|+....+ + .|.+||+.+++... +. +........|+|||++++..+.+ ..+.
T Consensus 325 ~lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 325 RVTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred Eeec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 3221 22233457899999999877643 2 58889998876533 22 22222356899999998876654 3477
Q ss_pred EEECCCCeEEEEeccCCCcEEEEEEcCC
Q 005254 604 LWTVRTGECIATYDKHEDKIWALAVGKK 631 (706)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 631 (706)
++++. |.....+..+.+.+...+|+|-
T Consensus 402 ~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 402 LVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEECC-CCceEECcCCCCCcCCCccCCC
Confidence 77774 4444455555566777777763
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.47 E-value=2.1e-09 Score=98.61 Aligned_cols=259 Identities=12% Similarity=0.095 Sum_probs=166.6
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee---------CCCcEEEEeCCCceEEEEEeCCC-----
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS---------KDNSVRLWDSESRCCVGVGTGHM----- 441 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~----- 441 (706)
+.+.+.|..+.+.+..+.....+-. + .+++++.+.++.+ .+..|.+||..+.+.+..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~---~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V---VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e---ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 8999999999998888776554443 2 6788998666666 78899999999999998876432
Q ss_pred --cCeEEEEEecCCCeEEEEecC-CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcE
Q 005254 442 --GAVGAVAFSKKLQNFLVSGSS-DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTA 518 (706)
Q Consensus 442 --~~v~~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 518 (706)
.....++++|+|+.++++--. +..|.+.|+...+. .....- .....-...+++..++ -+.||..
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv----------v~ei~v-p~~~~vy~t~e~~~~~--~~~Dg~~ 169 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF----------VRMMDV-PDCYHIFPTANDTFFM--HCRDGSL 169 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE----------EEEEeC-CCCcEEEEecCCccEE--EeecCce
Confidence 233478999999954444434 89999999987642 111111 1111111111111111 1233433
Q ss_pred EEEeCCC-ccEE-E---EEeec-----CCcEEEEEEcc-CCCEEEEecCCCcEEEEEcCCC-----ceEEEEee------
Q 005254 519 CVWRLPD-LVSV-V---TFRGH-----KRGIWSVEFSP-VDQVVITASGDKTIKIWSISDG-----SCLKTFEG------ 576 (706)
Q Consensus 519 ~i~d~~~-~~~~-~---~~~~~-----~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~------ 576 (706)
....+.+ ++.. . .+... ..+ .|++ +++++....+ |+|.+.|+... +....+..
T Consensus 170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred EEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccc
Confidence 3322221 1111 1 11110 112 4455 8888877766 99999996443 22222211
Q ss_pred -cccCEEEEEEEeCCCEEEEEe----------CCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCC-EEEEEe-CCCc
Q 005254 577 -HTSSVLRASFLTRGAQIVSCG----------ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE-MFATGG-SDAL 643 (706)
Q Consensus 577 -~~~~i~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~ 643 (706)
..+.+.-+++++++++|++.. ..+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCc
Confidence 223344599999999988743 225799999999999998874 45789999999999 777665 5788
Q ss_pred EEEEECCchhHHHH
Q 005254 644 VNLWHDSTAAEREE 657 (706)
Q Consensus 644 i~vw~~~~~~~~~~ 657 (706)
|.+.|..+++....
T Consensus 324 VsViD~~t~k~i~~ 337 (352)
T TIGR02658 324 LYIFDAETGKELSS 337 (352)
T ss_pred EEEEECcCCeEEee
Confidence 99999988876543
No 269
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=4.1e-11 Score=118.83 Aligned_cols=234 Identities=17% Similarity=0.109 Sum_probs=151.0
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC--CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (706)
..|.++|...... ..+..+...+.... ++|+++.++++...+ ..|++||+.+++.... ..+.+.+.+++|+|++
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~--~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSREPILSPA--WSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDG 245 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCCceeccc--CCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCC
Confidence 3577777754433 34444555566666 889999844443333 4799999998765443 3345566779999999
Q ss_pred CeEEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-C--cEEEEeCCCccE
Q 005254 454 QNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-R--TACVWRLPDLVS 528 (706)
Q Consensus 454 ~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~ 528 (706)
+.++++.+.++ .|++|++.... ...+..+........|+|||+.|+..+.. + .|+++|+.+++.
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQ-----------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCC-----------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 86666666555 47777776542 11222233334567899999988766543 3 588888877654
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCCC---cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC---CE
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---LV 602 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i 602 (706)
. .+..+...+....|+|++++++.++.++ .|.+||+.++... .+... .......|+|||++|+..+.++ .+
T Consensus 315 ~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 315 R-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred E-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 3 3444556677889999999999888776 7999998876443 33222 2334568999999998877764 35
Q ss_pred EEEECCCCeEEEEeccCCCcEEEEEE
Q 005254 603 KLWTVRTGECIATYDKHEDKIWALAV 628 (706)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~v~~~~~ 628 (706)
++.+. +++....+..+.+.+..+.|
T Consensus 392 ~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 392 GLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEEEC-CCceeeECCCCCCCcCCCCC
Confidence 55554 45555555544444544444
No 270
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=6.7e-11 Score=117.28 Aligned_cols=175 Identities=23% Similarity=0.247 Sum_probs=126.8
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc---CeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEE
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS---REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL 117 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 117 (706)
.|.++|...... +.+..+...+...+|||||++||.+... ..|++||+.+++... +..+.+.+.+++|+||++.|
T Consensus 171 ~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 588999865544 4455566788999999999999987543 579999999886543 33355667789999999988
Q ss_pred EEe-cCC--CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec-CC--eEEEEECCCCeeEEEeecccceE
Q 005254 118 ATA-GAD--RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD-DA--TVRVWDLLAKKCVATLDKHFSRV 191 (706)
Q Consensus 118 ~~~-~~d--~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v 191 (706)
+.. +.+ ..|++||+.++... .+..+........|+|+++. ++..+. ++ .|.++|+.+++.. .+..+....
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~ 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 754 333 46999999887643 34445555567799999876 544433 33 6888888776643 344455667
Q ss_pred EEEEEecCCCEEEEEeCCC---EEEEEeCCCCc
Q 005254 192 TSMAITSDGSTLISAGRDK---VVNLWDLRDYS 221 (706)
Q Consensus 192 ~~~~~~~~~~~l~~~~~dg---~i~~w~~~~~~ 221 (706)
....|+|+|++++.++.++ .|.+||+.++.
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 7889999999999888776 89999988754
No 271
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=6.6e-11 Score=116.11 Aligned_cols=179 Identities=20% Similarity=0.227 Sum_probs=115.7
Q ss_pred eEEcCCCCEEEEeeCC----eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec---cCeEEEEECCCCeEEEE
Q 005254 25 LVVSSDGSFIACACGE----SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH---SREIRVWDLSTLKCLRS 97 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~----~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~ 97 (706)
-+|+....++....++ .|.++|...... +.+..+...+.+.+|||||+.|+..+. ...|.+||+.+++...
T Consensus 179 g~f~~riayv~~~~~~~~~~~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~- 256 (448)
T PRK04792 179 GAFLTRIAYVVVNDKDKYPYQLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK- 256 (448)
T ss_pred ccccCEEEEEEeeCCCCCceEEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 3444444444433332 578888765544 445556778999999999999987643 2368999998876533
Q ss_pred eeccCCCeEEEEECCCCCEEEEe-cCCC--cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCC--eEEE
Q 005254 98 WKGHDGPAIGMACHPSGGLLATA-GADR--KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA--TVRV 172 (706)
Q Consensus 98 ~~~~~~~v~~~~~s~~~~~l~~~-~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~v 172 (706)
+....+.....+|+|||+.|+.. +.++ .|+++|+++++.. .+..+.......+|+||++. ++++...++ .|.+
T Consensus 257 lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~ 334 (448)
T PRK04792 257 VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYR 334 (448)
T ss_pred ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCE-EEEEECCCCCceEEE
Confidence 22223344578999999988764 4455 4888898887644 34445566778899999876 233333333 5666
Q ss_pred EECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC
Q 005254 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 173 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 208 (706)
+|+.+++... +..+.......+|+|||++|+..+.
T Consensus 335 ~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 335 VNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred EECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEe
Confidence 7877776443 2222223345689999998877654
No 272
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=4.2e-11 Score=118.53 Aligned_cols=213 Identities=12% Similarity=0.011 Sum_probs=138.2
Q ss_pred cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC--CeEEEEEecCCCCCCCcccccceeEEEeecCcceEE
Q 005254 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (706)
.|.++|...+.. ..+..+...+....|+|+|+.++++...+ ..|.+|++..+. ...+.........
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-----------~~~l~~~~g~~~~ 247 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-----------REQITNFEGLNGA 247 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-----------EEEccCCCCCcCC
Confidence 477777765543 34445667889999999998554544333 368888887652 1112222334456
Q ss_pred EEEcCCCCEEEE-eeCCC--cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CC--cEEEEEcCCCceEEE
Q 005254 500 LAVAPNDSLVCT-GSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DK--TIKIWSISDGSCLKT 573 (706)
Q Consensus 500 ~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~ 573 (706)
..|+|||+.|+. .+.+| .|+++|+.+++.. .+..+........|+|||+.|+..+. +| .|+++|+.+++....
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 899999998874 44444 5888899887654 34445555677899999998776554 33 577888877764332
Q ss_pred EeecccCEEEEEEEeCCCEEEEEeCC-C--CEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-C--cEEEE
Q 005254 574 FEGHTSSVLRASFLTRGAQIVSCGAD-G--LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD-A--LVNLW 647 (706)
Q Consensus 574 ~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~vw 647 (706)
. ..........|+|||++|+..+.+ + .|.+||+.+++....... .......|+|||++++..+.+ | .+.++
T Consensus 327 t-~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 327 T-FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLV 403 (430)
T ss_pred e-cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 2 122233457899999999877654 3 588899988865332222 122356899999988866543 3 45666
Q ss_pred ECC
Q 005254 648 HDS 650 (706)
Q Consensus 648 ~~~ 650 (706)
++.
T Consensus 404 ~~~ 406 (430)
T PRK00178 404 SIN 406 (430)
T ss_pred ECC
Confidence 664
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=4.4e-09 Score=92.21 Aligned_cols=269 Identities=9% Similarity=0.096 Sum_probs=174.6
Q ss_pred CCcEEEEeCCCceeeE---eeeCCcceEEEeeeeeecCCCEEEEEee-C--CCcEEEEeCCC--ceEEE--EEeCCCcCe
Q 005254 375 IEQVQVYDLSSMSCSY---VLAGHSEIVLCLDTCALSSGKILIVTGS-K--DNSVRLWDSES--RCCVG--VGTGHMGAV 444 (706)
Q Consensus 375 ~~~i~~~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~l~~~~-~--dg~i~i~d~~~--~~~~~--~~~~~~~~v 444 (706)
+..|++|++.+..-.. .+-...+.++-++ +.++.+. |.++. . +|.|..|.+.. |+... .......+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~--~~~~~~~-LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLA--VNPDQRH-LYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEE--ECCCCCE-EEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 4779999887432211 2223445556666 7788877 44443 3 57777776654 44332 233344455
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCc----------ceEEEEEcCCCCEEEEeeC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK----------DINSLAVAPNDSLVCTGSQ 514 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~~~s~~~~~l~~~~~ 514 (706)
+.++++++++.++.+.-..|.|.++.++...... .......|.. .+....+.|++++|++.+-
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~-------~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ-------PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccc-------cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 8899999998544455567899999987642111 1111111222 2778899999999998763
Q ss_pred -CCcEEEEeCCCccEEEEEe---ecCCcEEEEEEccCCCEEEEecC-CCcEEEEEcCCC-ceEEEEeec---------cc
Q 005254 515 -DRTACVWRLPDLVSVVTFR---GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDG-SCLKTFEGH---------TS 579 (706)
Q Consensus 515 -dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~~---------~~ 579 (706)
--.|.+|++..+.+...-. ........|.|+|++++.....+ +++|.+|..+.. ..+..++.+ ..
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 2359999999776543322 24556789999999999877665 889999998774 233333321 24
Q ss_pred CEEEEEEEeCCCEEEEEeCC-CCEEEEECCC--CeE--EEEeccCCCcEEEEEEcCCCCEEEEEeCC-CcEEEEECCchh
Q 005254 580 SVLRASFLTRGAQIVSCGAD-GLVKLWTVRT--GEC--IATYDKHEDKIWALAVGKKTEMFATGGSD-ALVNLWHDSTAA 653 (706)
Q Consensus 580 ~i~~~~~s~~~~~l~~~~~d-g~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vw~~~~~~ 653 (706)
....+.+++||++|.++... ..|.+|.+.. +++ +.....+...-....|++++++|++++.+ ..|.+|..+...
T Consensus 245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 56788999999999876542 3677777653 332 22233444446789999999999988764 568888876543
No 274
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.36 E-value=6e-10 Score=93.90 Aligned_cols=273 Identities=19% Similarity=0.239 Sum_probs=174.1
Q ss_pred eCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEe--CCCCc-EEEEEecCCcEEEEeCCCceeeEeeeCCcc---
Q 005254 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL--GEEEQ-YLAVATNIEQVQVYDLSSMSCSYVLAGHSE--- 397 (706)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~--- 397 (706)
..|.+.+|++........... .......+..+.|. +.++. .++.+...|.|.+|..........+.+-..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~----q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki 119 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTL----QCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI 119 (339)
T ss_pred eccceEEEeecccccCcccee----eeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh
Confidence 456777777765543221111 11112233334332 23333 567777789999998776555444443221
Q ss_pred eEE-EeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEE--EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 398 IVL-CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG--VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 398 ~i~-~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
.+. ++..-+.+.+.. ++++..+|.+.+-+........ ..+.|.-......|+...++++.+|+.|+.+..||++..
T Consensus 120 ~~~~~lslD~~~~~~~-i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 120 SVVEALSLDISTSGTK-IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred hheeeeEEEeeccCce-EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence 122 232226666666 8888999999866655544433 678899999999999888889999999999999999832
Q ss_pred CCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccC--CCE
Q 005254 475 SDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPV--DQV 550 (706)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~--~~~ 550 (706)
.. ........|...|.++.-+| .+.++++|+.|-.|++||.++. +++..- .-.+.|..+.++|. +..
T Consensus 199 ~~--------~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~l 269 (339)
T KOG0280|consen 199 KT--------FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRL 269 (339)
T ss_pred cc--------eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHH
Confidence 10 01222456778899998876 5789999999999999999854 444332 24588999999994 345
Q ss_pred EEEecCCCcEEEEEcCCCc-----eEEEEeecccCEEEEEEEeCCCEEEEEe-CCCCEE-EEECCCCe
Q 005254 551 VITASGDKTIKIWSISDGS-----CLKTFEGHTSSVLRASFLTRGAQIVSCG-ADGLVK-LWTVRTGE 611 (706)
Q Consensus 551 l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~-iwd~~~~~ 611 (706)
|+++-..| .+|-+.+.+. .....+.|.+-+..-.|.....+|++++ .|+.++ +|-..+++
T Consensus 270 L~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 270 LAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred HHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 66666666 7887776542 2334445666555556644445677754 455544 66544443
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.36 E-value=2e-09 Score=115.88 Aligned_cols=236 Identities=14% Similarity=0.151 Sum_probs=158.9
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC--------------CCcCeEEEEEecCCCeEEEEecCCCeEEEEEe
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG--------------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
..+.++.++++-..++.|+++|..... +..+.. .-.....+++++++..+.++-..++.|+.+|+
T Consensus 575 vd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~ 653 (1057)
T PLN02919 575 IDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDF 653 (1057)
T ss_pred EECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEec
Confidence 555566657777788899999976543 333221 11245789999887645555566788999987
Q ss_pred cCCCCCCCcccccceeEEEee-----------------cCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEe
Q 005254 472 DGLSDDAEQPMNLKAKAVVAA-----------------HGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFR 533 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 533 (706)
.+.. ...+.+ .-.....++++| ++.++++.+.++.|++||..++... .+.
T Consensus 654 ~~~~-----------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~ 721 (1057)
T PLN02919 654 VNET-----------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS 721 (1057)
T ss_pred CCCE-----------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe
Confidence 6541 111100 012346799999 5666677777889999998776432 221
Q ss_pred e---------------cCCcEEEEEEccCCCEE-EEecCCCcEEEEEcCCCceEEEEee---------------------
Q 005254 534 G---------------HKRGIWSVEFSPVDQVV-ITASGDKTIKIWSISDGSCLKTFEG--------------------- 576 (706)
Q Consensus 534 ~---------------~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~--------------------- 576 (706)
+ .-.....++++|+++.| ++-+.++.|++||+.++.......+
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 1 11235679999999855 4555678999999987653211100
Q ss_pred cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec-------------cCCCcEEEEEEcCCCCEEEEEeCCCc
Q 005254 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-------------KHEDKIWALAVGKKTEMFATGGSDAL 643 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~~~~~dg~ 643 (706)
.-.....++++++|+.+++-..++.|++||..++....... +.......++++++|+.+++-+.++.
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 01124578999999988888889999999998877653321 11235678999999998888889999
Q ss_pred EEEEECCchhH
Q 005254 644 VNLWHDSTAAE 654 (706)
Q Consensus 644 i~vw~~~~~~~ 654 (706)
|++|++.++..
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999988654
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.34 E-value=6.4e-10 Score=93.73 Aligned_cols=267 Identities=16% Similarity=0.171 Sum_probs=176.2
Q ss_pred CcEEEEeCCCceeeE---eeeCCcceEEEeeeeeecCCCE-EEEEeeCCCcEEEEeCCCceEEEEEeCCCc------CeE
Q 005254 376 EQVQVYDLSSMSCSY---VLAGHSEIVLCLDTCALSSGKI-LIVTGSKDNSVRLWDSESRCCVGVGTGHMG------AVG 445 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~v~ 445 (706)
|.+.+|++...+... ........+..+.|+.-+.+.. .++-+...|.|.++..........+.+-.. ...
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 677888877654432 1122333444455444443333 567778889999997665544444433211 234
Q ss_pred EEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCC
Q 005254 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~ 524 (706)
++.|++.+. -++++..+|.+.+-+.... ..+.......|..+.....|+. +.+++.+|+.|+.+..||++
T Consensus 126 slD~~~~~~-~i~vs~s~G~~~~v~~t~~--------~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 126 SLDISTSGT-KIFVSDSRGSISGVYETEM--------VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred EEEeeccCc-eEEEEcCCCcEEEEeccee--------eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence 567888776 5888888888885544322 2234445677888888888876 34688999999999999998
Q ss_pred -CccEEEE-EeecCCcEEEEEEcc-CCCEEEEecCCCcEEEEEcCC-CceEEEEeecccCEEEEEEEeCC--CEEEEEeC
Q 005254 525 -DLVSVVT-FRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRG--AQIVSCGA 598 (706)
Q Consensus 525 -~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~ 598 (706)
.++.+.. .+-|...|.++.-+| .+.++++|+.|-.|++||.++ ++++..-. -.+.|..+.++|.- +.|+++-.
T Consensus 197 ~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 197 IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred CCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHh
Confidence 3334433 456889999999887 467999999999999999984 56665443 34789999998853 34566666
Q ss_pred CCCEEEEECCCC--e---EEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCcEE-EEECCchh
Q 005254 599 DGLVKLWTVRTG--E---CIATYDKHEDKIWALAVGKKTEMFATGG-SDALVN-LWHDSTAA 653 (706)
Q Consensus 599 dg~i~iwd~~~~--~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~-vw~~~~~~ 653 (706)
+| .+|-+...+ + .....+.|.+-+..-.|......|+|++ .|..++ +|-.-++.
T Consensus 276 ~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 276 NG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 55 666666544 2 3344456777666667755556788865 477755 88665543
No 277
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.33 E-value=3.1e-09 Score=90.13 Aligned_cols=204 Identities=21% Similarity=0.270 Sum_probs=138.5
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCe--EEEeec---CCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNAS--IKSTIE---GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK 99 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~--~~~~l~---~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 99 (706)
++.++||++||+..+..|.|...++.- .+...+ ...-+=+-++||||+.+||.+...|+|+++|+.... +..+.
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIP 81 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcC
Confidence 788999999999999999999876541 222222 222355889999999999999999999999997643 33333
Q ss_pred c-------cCCCeEEEEECCCC---C---EEEEecCCCcEEEEECCC-----CeEEEEee---CCCCcEEEEEEcCCCCc
Q 005254 100 G-------HDGPAIGMACHPSG---G---LLATAGADRKVLVWDVDG-----GFCTHYFK---GHKGVVSSILFHPDTDK 158 (706)
Q Consensus 100 ~-------~~~~v~~~~~s~~~---~---~l~~~~~d~~i~vw~~~~-----~~~~~~~~---~~~~~v~~~~~~~~~~~ 158 (706)
+ -...|..|.|-+.. + -|++...+|.++-|-+.. .+..+.+. .+...|.++.++|.. +
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~ 160 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-R 160 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-C
Confidence 2 23567777776532 1 355556677777776532 22333332 247789999999964 3
Q ss_pred eEEEEEecCC----------eEEEEECCCCeeEE-----------------------E---e---ecccceEEEEEEecC
Q 005254 159 SLLFSGSDDA----------TVRVWDLLAKKCVA-----------------------T---L---DKHFSRVTSMAITSD 199 (706)
Q Consensus 159 ~~l~~~~~dg----------~i~vwd~~~~~~~~-----------------------~---~---~~~~~~v~~~~~~~~ 199 (706)
.+++.|.... -+..|.+-++.+-. . + ......|..|..|||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 3444444322 26677653321100 0 0 113467899999999
Q ss_pred CCEEEEEeCCCEEEEEeCCCCcceeeecCcc
Q 005254 200 GSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 200 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 230 (706)
|+.|++...+|.|.+|++...+........+
T Consensus 241 g~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred CCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 9999999999999999999888776665544
No 278
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=5.1e-08 Score=85.67 Aligned_cols=182 Identities=10% Similarity=0.122 Sum_probs=116.7
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEE---eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 482 (706)
+.|+++.++++.-.--+|.+|++..++....- -......+.|.|+|+++..-+..--+++|.+|..+......+...
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 78889886666555668999999977654321 145567789999999996566667799999999987522221111
Q ss_pred ccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-CcEEEEeCCCc--cE--EEEEeecCCcEEEEEEccCCCEEEEecCC
Q 005254 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-RTACVWRLPDL--VS--VVTFRGHKRGIWSVEFSPVDQVVITASGD 557 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~i~d~~~~--~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 557 (706)
.......-.........+.+++||++|.++... ..|.+|.+... ++ ......+........|++++++|+++..+
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred eeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence 111111112234567889999999999987542 36778876543 22 22223344557889999999999988875
Q ss_pred -CcEEEEEcC--CCceEEEEe-ecccCEEEEEEE
Q 005254 558 -KTIKIWSIS--DGSCLKTFE-GHTSSVLRASFL 587 (706)
Q Consensus 558 -g~i~iwd~~--~~~~~~~~~-~~~~~i~~~~~s 587 (706)
..|.+|.++ +|++-.... .......|+.|.
T Consensus 312 sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 312 SDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 458888764 444433222 133345566653
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.32 E-value=5.6e-09 Score=112.50 Aligned_cols=253 Identities=13% Similarity=0.082 Sum_probs=162.3
Q ss_pred eEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeC--C------------cceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--H------------SEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~--~------------~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
..+++.+.++.++++-+.++.|+++|...... ..+.+ . -.....+. +.++++.+.++-..++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i-~~ig~~g~~G~~dG~~~~a~f~~P~GIa--vd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI-VQIGSTGEEGLRDGSFEDATFNRPQGLA--YNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEE-EEEccCCCcCCCCCchhccccCCCcEEE--EeCCCCEEEEEeCCCce
Confidence 35666666777888888889999999865433 22222 1 11234454 66777764555556678
Q ss_pred EEEEeCCCceEEEEEeC----------------CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCc----cc
Q 005254 423 VRLWDSESRCCVGVGTG----------------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ----PM 482 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~----~~ 482 (706)
|+.+|..++........ .-.....++++|++..++++...++.|++|+...+...... ..
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99999887654322110 01234579999965657788888999999998654210000 00
Q ss_pred ccceeEEEeecCcceEEEEEcCCCCEE-EEeeCCCcEEEEeCCCccEEEEEee---------------------cCCcEE
Q 005254 483 NLKAKAVVAAHGKDINSLAVAPNDSLV-CTGSQDRTACVWRLPDLVSVVTFRG---------------------HKRGIW 540 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~---------------------~~~~v~ 540 (706)
...........-.....++++|+++.| ++.+.++.|++||+.++.......+ .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000000000111345679999999855 4555678999999987653221100 011246
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEe-------------ecccCEEEEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 541 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
.++++++|+.+++-..++.|++||..++....... +.-.....++++++|+.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 88999999988888899999999998776543221 11235678999999998888888999999999
Q ss_pred CCCeE
Q 005254 608 RTGEC 612 (706)
Q Consensus 608 ~~~~~ 612 (706)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 98864
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.30 E-value=1.7e-09 Score=90.01 Aligned_cols=228 Identities=16% Similarity=0.052 Sum_probs=154.5
Q ss_pred EEEEeeCCCcEEEEeCCCceEE-EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe
Q 005254 413 LIVTGSKDNSVRLWDSESRCCV-GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (706)
.|+.|+..|...+|...+.+.. .....+...|+-+.-.-+...-+..++.|.++++.++..... .....
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~----------~~~~h 155 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN----------KFAVH 155 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc----------cceee
Confidence 3899999999999999865433 333334444433322222233577888999999999876531 11111
Q ss_pred ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc-EEE--EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVV--TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 492 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
...-.+.++++++|++++++.+....|..|.+.... .+. ......+.-.+..|+.....+|++..||++.|||++..
T Consensus 156 ~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 156 NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 111237889999999999999999999999887542 222 22334455567899999999999999999999999865
Q ss_pred ceE-----EEEeecccCEEEEEEEeCCC--EEEEEeCCCCEEEEECCCCeEEEEecc-------CCCc-EEEEEEcCCCC
Q 005254 569 SCL-----KTFEGHTSSVLRASFLTRGA--QIVSCGADGLVKLWTVRTGECIATYDK-------HEDK-IWALAVGKKTE 633 (706)
Q Consensus 569 ~~~-----~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~-v~~~~~s~~~~ 633 (706)
... .+-..|.+.+..+.|++-|. +|+..-.-+.+.+-|+++++..+.+.. |... |..-.|+.++.
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 332 22234889999999998654 455555557899999999876655532 3333 77777887777
Q ss_pred EEEEEeCCCcEEEEECCc
Q 005254 634 MFATGGSDALVNLWHDST 651 (706)
Q Consensus 634 ~l~~~~~dg~i~vw~~~~ 651 (706)
.+.+..++. +.-|++.+
T Consensus 316 s~~v~~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 316 SNDVKNELQ-GAEYNILS 332 (344)
T ss_pred ccccccchh-hheeeccc
Confidence 666655543 44555543
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=5.8e-11 Score=124.04 Aligned_cols=221 Identities=18% Similarity=0.280 Sum_probs=161.8
Q ss_pred CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 395 ~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
+-..+.++. ..|.... -++|+.||.+++|....++.+..++ .....|+.+.|+.+|. ....+..||.+.+|....
T Consensus 2207 ~v~~v~r~~--sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMT--SHPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred ccCceeeec--CCCCCce-EEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-ceeeeccCCceeecccCC
Confidence 344556664 4455554 8899999999999999888776654 3348899999999987 678888899999999873
Q ss_pred CCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee---CCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCCC
Q 005254 474 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS---QDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQ 549 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~ 549 (706)
. .......|......+.|-. ..+++++ .++.+.+||..-. ..-..-..|.+.++++++.|..+
T Consensus 2283 k-----------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2283 K-----------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred c-----------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce
Confidence 2 4444556777777777765 4566554 5678999996432 22222377999999999999999
Q ss_pred EEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc---CCCc--E-
Q 005254 550 VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK---HEDK--I- 623 (706)
Q Consensus 550 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~--v- 623 (706)
.|++|+.+|.|++||++..++++.++. +. ...++++|+..|.++||++..-..+..+.. |.+- .
T Consensus 2350 llisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~ 2419 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNI 2419 (2439)
T ss_pred EEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhc
Confidence 999999999999999988777776653 33 456899999999999999988777766652 2111 0
Q ss_pred -EEEEEcCCCCEEEEEeCCCc
Q 005254 624 -WALAVGKKTEMFATGGSDAL 643 (706)
Q Consensus 624 -~~~~~s~~~~~l~~~~~dg~ 643 (706)
..+-.. .++.|.+++.||+
T Consensus 2420 g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2420 GMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred Cceeeec-cCceEEEecCCCC
Confidence 222222 2446777777774
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=2.8e-11 Score=110.88 Aligned_cols=172 Identities=17% Similarity=0.304 Sum_probs=135.0
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC-------CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCc
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST-------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRK 125 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 125 (706)
+..+.||...|.+++--.+.+-+++++.|.+|++|.++. ..+..++..|+.+|..+.|-.+.++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 466789999999998877888899999999999999863 34677888999999999999999999876 688
Q ss_pred EEEEECCCCeEEEEee--CCCCcEEEEEEcCCCCceEEEE-EecCCeEEEEECCCCeeEEEee-----cccceEEEEEEe
Q 005254 126 VLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFS-GSDDATVRVWDLLAKKCVATLD-----KHFSRVTSMAIT 197 (706)
Q Consensus 126 i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~ 197 (706)
|.+||.--++++.... ...+.+..+...++-+..+++. ++...+|+++|.+.++-...++ +..+-+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999998777665322 2233444444455533334444 4788999999999887666654 344668899999
Q ss_pred cCCCEEEEEeCCCEEEEEeCCCCcceeee
Q 005254 198 SDGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 198 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
+.|+.++.+-.+|.|.+.|.++++.+...
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 99999999999999999999998866543
No 283
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.28 E-value=1.1e-08 Score=99.90 Aligned_cols=188 Identities=9% Similarity=0.031 Sum_probs=110.5
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCCc----------cE-EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGSD----------TI-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~----------~i-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
+++.++....+.+.-+|..+|+.+-..+.... .+ ..++. ++..++.++.++.+.-+|.++|+.+.+.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 44444444445889999999998754432210 00 01111 3556777888999999999999998877
Q ss_pred eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEE-EEEcC--CCCceEEEEEecCCeEEEEEC
Q 005254 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSS-ILFHP--DTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 99 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~-~~~~~--~~~~~~l~~~~~dg~i~vwd~ 175 (706)
+.......+... .+..++++..++.+..+|.++|+.+..+......... ..-+| .++. ++.++.+|.+...|.
T Consensus 147 ~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~--v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 147 KVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGG--AIVGGDNGRVSAVLM 222 (394)
T ss_pred cCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCE--EEEEcCCCEEEEEEc
Confidence 644321111112 2446777778899999999999988776532111100 00011 1123 677788899999999
Q ss_pred CCCeeEEEeecccc-------eEEEEEEec--CCCEEEEEeCCCEEEEEeCCCCcce
Q 005254 176 LAKKCVATLDKHFS-------RVTSMAITS--DGSTLISAGRDKVVNLWDLRDYSCK 223 (706)
Q Consensus 176 ~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~dg~i~~w~~~~~~~~ 223 (706)
.+|+.+...+.... ....+.-+| .+..++.++.+|.+..+|..+++.+
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~ 279 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV 279 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence 99887655421100 000011111 2345666667777777777766544
No 284
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.26 E-value=2.4e-08 Score=97.40 Aligned_cols=136 Identities=9% Similarity=0.018 Sum_probs=92.3
Q ss_pred CCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc-CEEEE
Q 005254 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLRA 584 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~ 584 (706)
+..+++++.+|.+..+|..+++.+...... ....+. ..+..++.++.+|.+..+|..+++.+-....... .....
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp 331 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP 331 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence 456777778999999999999877654321 111222 2466788888999999999999987654331111 11112
Q ss_pred EEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEE-EEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA-LAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 585 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
.. .+.+|+.++.||.+++.|..+|+.+...+.....+.+ ..+ .+..|+.++.||.|..+++
T Consensus 332 ~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 332 VL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 22 2458888999999999999999998887654333332 222 2446888899999988775
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.26 E-value=5.3e-09 Score=87.06 Aligned_cols=234 Identities=10% Similarity=0.026 Sum_probs=154.9
Q ss_pred CCcEEEEEecCCcEEEEeCCCcee-eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcC
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSC-SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 443 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 443 (706)
...+++.++..|.+.+|...+.+. ......+...|.-.. -.-+...-+..++.|.++++.+++.+..........-.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~--r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK--RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhh--hhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence 566889999999999999986554 334444555444333 11122222666778888888877655433333222234
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 523 (706)
+.+++++++++ ++++.+....|..|.++...... ...........-.+..|+.....+|+++.||++.|||+
T Consensus 161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~-------~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYI-------ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDV 232 (344)
T ss_pred eeeeEEcCCCc-eEEEecCCCcceEEEeCCcccee-------eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEe
Confidence 88899999988 88999999999999998653211 11122333344567889999999999999999999999
Q ss_pred CCccEE-----EEEeecCCcEEEEEEccCCC--EEEEecCCCcEEEEEcCCCceEEEEee-------ccc-CEEEEEEEe
Q 005254 524 PDLVSV-----VTFRGHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEG-------HTS-SVLRASFLT 588 (706)
Q Consensus 524 ~~~~~~-----~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~-~i~~~~~s~ 588 (706)
+..... .+-+.|.+.+..+.|++.|. +|+..-.-+.+.+-|+++++..+.+.. |.. .|....|+.
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence 865322 22335899999999998653 455555567799999998866554432 222 266677777
Q ss_pred CCCEEEEEeCCCCEEEEECCC
Q 005254 589 RGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 589 ~~~~l~~~~~dg~i~iwd~~~ 609 (706)
++.-+.+.+++. +.-|++.+
T Consensus 313 ~n~s~~v~~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 313 ENESNDVKNELQ-GAEYNILS 332 (344)
T ss_pred CCcccccccchh-hheeeccc
Confidence 766665555432 45555543
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=5.5e-09 Score=100.85 Aligned_cols=189 Identities=8% Similarity=0.018 Sum_probs=123.6
Q ss_pred ceEEcCCCCE-EEEeeC----CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEE-ec--cCeEEEEECCCCeEE
Q 005254 24 PLVVSSDGSF-IACACG----ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-GH--SREIRVWDLSTLKCL 95 (706)
Q Consensus 24 ~~~~s~dg~~-l~~~~~----~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~-~~--d~~i~iwd~~~~~~~ 95 (706)
...|||||+. +++... ..|+++|+.+++...... ..+...+..|||||+.|+.. +. +..|.++|+.+++.
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~- 269 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL- 269 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-
Confidence 4789999985 665432 269999999988655443 45566778899999887754 32 45788889888764
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecCC---CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec------
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGAD---RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD------ 166 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------ 166 (706)
..+..+........|+|||+.|+..+.. ..|.+.|+.+++....... .. ....|+|+|+..++.....
T Consensus 270 ~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~ 346 (419)
T PRK04043 270 TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGK 346 (419)
T ss_pred EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCC
Confidence 3444444434456899999988887632 2688889988876443321 11 1248999998733332221
Q ss_pred C-CeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC---EEEEEeCCC
Q 005254 167 D-ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK---VVNLWDLRD 219 (706)
Q Consensus 167 d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~w~~~~ 219 (706)
. ..|.+.|+.++... .+... +......|+|||+.++....++ .+.+.+++.
T Consensus 347 ~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 347 NTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 1 36888898877643 34332 2334588999999887765432 455666644
No 287
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=1.5e-10 Score=121.15 Aligned_cols=191 Identities=18% Similarity=0.319 Sum_probs=157.4
Q ss_pred cCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec-cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe
Q 005254 57 EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF 135 (706)
Q Consensus 57 ~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 135 (706)
+.+-..|.++.-+|...+.++|+.||.|++|.+..+..+..++. -...|+.+.|+.+|+....+..||.+.+|... .+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 34556788888899999999999999999999999988887764 23789999999999999999999999999987 67
Q ss_pred EEEEeeCCCCcEEEEEEcCCCCceEEEEEe---cCCeEEEEECCC--C-eeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGS---DDATVRVWDLLA--K-KCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
+....+.|......+.|.. . ++++++ .++.+.+||..- + ..+. ..|.+.++++++.|.-++|++|+.+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred ceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCc
Confidence 7777888999999999976 2 266654 578999999642 2 2333 7899999999999999999999999
Q ss_pred CEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeE
Q 005254 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286 (706)
Q Consensus 210 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 286 (706)
|.|++||++..+....++.-. ....|++++..|.+++|++..-.+
T Consensus 2358 G~v~l~D~rqrql~h~~~~~~--------------------------------~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQALD--------------------------------TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred CcEEEeehHHHHHHHHhhhhh--------------------------------hhheeeccCcccceEEEEccccch
Confidence 999999999887776655311 123789999999999999987643
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.21 E-value=1.8e-10 Score=101.67 Aligned_cols=157 Identities=25% Similarity=0.384 Sum_probs=115.2
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCe----EEEeecCCCccEEEEEEccCCCEEEE---EeccCeEEEEECCCCeEE
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNAS----IKSTIEGGSDTITALALSPDDKLLFS---SGHSREIRVWDLSTLKCL 95 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~----~~~~l~~~~~~i~~l~~s~~~~~l~s---~~~d~~i~iwd~~~~~~~ 95 (706)
.+..+++++++|++... ...+++..... .+..... ...-+++.|..+...... +++...+.+|+...+.+
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~- 144 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC- 144 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-
Confidence 67888999999999887 55566654333 2222222 222244444444444443 45566777787766444
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEE
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF-KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 174 (706)
..+-||-..++.++|+||++.++++..|..|+|-....-..+..+ -||+.-|..++..++ .. |++++.|++|++||
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~--LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YL--LLSGSGDKTLRLWD 221 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ce--eeecCCCCcEEEEe
Confidence 345569999999999999999999999999999888766666554 479999999999875 33 89999999999999
Q ss_pred CCCCeeEEEee
Q 005254 175 LLAKKCVATLD 185 (706)
Q Consensus 175 ~~~~~~~~~~~ 185 (706)
+.+|+.+.++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999886653
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.19 E-value=1.9e-10 Score=101.49 Aligned_cols=158 Identities=15% Similarity=0.234 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE----EEEEeecCCcEEEEEEccCCCEEEE---ecCCCcEEEEEcCCCc
Q 005254 497 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVS----VVTFRGHKRGIWSVEFSPVDQVVIT---ASGDKTIKIWSISDGS 569 (706)
Q Consensus 497 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~---~~~dg~i~iwd~~~~~ 569 (706)
...+..++.++++|++..+....++++..... ..... -...-+++.|..+...... ++....+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34566788999999999888887887765432 22222 2223344455444444433 4455667777766544
Q ss_pred eEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 570 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 570 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+. .+-||-+.++.++++||+++++++..|..|+|-.....-.+..+- ||..-|..++.-++ ..|+++|.|+++++||
T Consensus 144 ~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 CE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred cc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 44 445799999999999999999999999999998887766666665 79999999998655 4589999999999999
Q ss_pred CCchhHHHH
Q 005254 649 DSTAAEREE 657 (706)
Q Consensus 649 ~~~~~~~~~ 657 (706)
+.+++....
T Consensus 222 ~~sgk~L~t 230 (390)
T KOG3914|consen 222 ITSGKLLDT 230 (390)
T ss_pred cccCCcccc
Confidence 999987643
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=3.9e-08 Score=95.01 Aligned_cols=213 Identities=9% Similarity=0.024 Sum_probs=129.9
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEE-EeeC--CCcEEEEeCCCceEEEEEeCCCcCeEEEEEecC
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV-TGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 452 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~-~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (706)
..|.+-|...........+ . ...... ++|+++.+++ +... +..|.++|+.+++...... ..+......|+||
T Consensus 169 ~~l~~~d~dg~~~~~~~~~-~-~~~~p~--wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPD 243 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG-G-LNIFPK--WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKD 243 (419)
T ss_pred ceEEEECCCCCceeEEccC-C-CeEeEE--ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCC
Confidence 3566655554433323332 2 333444 8899885344 3333 3568899998887655443 4555667889999
Q ss_pred CCeEEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-C--cEEEEeCCCcc
Q 005254 453 LQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-R--TACVWRLPDLV 527 (706)
Q Consensus 453 ~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~ 527 (706)
|+.++++.+.++ .|.++++..+. ...+..+........|+|||+.|+..+.. + .|++.|+.+++
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~-----------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKT-----------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCc-----------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 987777766554 56666665442 11222222223456899999988776642 3 58888888776
Q ss_pred EEEEEeecCCcEEEEEEccCCCEEEEecCC---------CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeC
Q 005254 528 SVVTFRGHKRGIWSVEFSPVDQVVITASGD---------KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 528 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 598 (706)
......... ....|+|||+.|+..... ..|.+.|+.++... .+... .......|+|||+.|+....
T Consensus 313 ~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 313 VEQVVFHGK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred eEeCccCCC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEc
Confidence 644332111 124899999998776643 36888898877653 33322 22335789999998877665
Q ss_pred CC---CEEEEECCC
Q 005254 599 DG---LVKLWTVRT 609 (706)
Q Consensus 599 dg---~i~iwd~~~ 609 (706)
++ .+.+.++..
T Consensus 388 ~~~~~~L~~~~l~g 401 (419)
T PRK04043 388 LGNQSALGIIRLNY 401 (419)
T ss_pred cCCcEEEEEEecCC
Confidence 43 356667643
No 291
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.17 E-value=6.5e-10 Score=105.88 Aligned_cols=203 Identities=20% Similarity=0.300 Sum_probs=150.3
Q ss_pred eeeeeeeccceEEcCCCCEEEEeeCCeEEEEEccCCe-EEEeec-CCCccEEEEEEccCC--CEEEEEeccCeEEEEECC
Q 005254 15 VLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNAS-IKSTIE-GGSDTITALALSPDD--KLLFSSGHSREIRVWDLS 90 (706)
Q Consensus 15 ~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~-~~~~l~-~~~~~i~~l~~s~~~--~~l~s~~~d~~i~iwd~~ 90 (706)
.+..--+.+++.++|.|+-+|.++.-.+++.|+...- +.+-|. ...-.|-.+.|+|.. .+-++......-.+|++.
T Consensus 20 sl~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA 99 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA 99 (1081)
T ss_pred EEEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhh
Confidence 3333334458999999999999998889999886542 222222 124467888898854 334444444467789985
Q ss_pred C---CeEEEEeeccCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCe-EEEEeeCCCCcEEEEEEcCCCCceEEEEEe
Q 005254 91 T---LKCLRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDVDGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 91 ~---~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 165 (706)
. ...-..+.+|+..|+.+-|.|.. ..+|+++.|..+..||+.+.. .+..+..-...-..+.|+..... +.+.+
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~--vlass 177 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN--VLASS 177 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc--hhhhc
Confidence 3 34555678999999999999965 478899999999999998764 45555555566678899876544 66667
Q ss_pred cCCeEEEEECCCC-eeEEEeecccceEEEEEEec-CCCEEEEEeCCCEEEEEeCCC
Q 005254 166 DDATVRVWDLLAK-KCVATLDKHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 166 ~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~ 219 (706)
....|.+||.+.| .++..+++|...|..+.|.. ....+.+.+.||+|++||...
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 7788999999866 47788899999999999865 334688899999999999864
No 292
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=4.4e-09 Score=102.09 Aligned_cols=497 Identities=13% Similarity=0.111 Sum_probs=253.2
Q ss_pred eEEEEECCCCCEEEEec----CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee
Q 005254 105 AIGMACHPSGGLLATAG----ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180 (706)
Q Consensus 105 v~~~~~s~~~~~l~~~~----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 180 (706)
-+-..|+|...++|+++ ..|+|.||- ++|++..... ..-.++++||+|. ..+|+.|-.-|.+.+|...+.+.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChH--HHHHhhccccceeEEEecCCcee
Confidence 34467999999998876 457888874 5666443322 2334677999995 44689999999999999887777
Q ss_pred EEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec-----CcceeeeEE--eeCCC------------
Q 005254 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP-----TYEMVEAVC--AIPPG------------ 241 (706)
Q Consensus 181 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~-----~~~~~~~~~--~~~~~------------ 241 (706)
-.....|..+|..+.||++|..|+++..-|.+.+|.......+...+ ......-.+ ..+++
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVt 173 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVT 173 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhcc
Confidence 66667899999999999999999999999999999987433222221 122222222 22221
Q ss_pred ---CCcccccc---cccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccC
Q 005254 242 ---SAFDSFLS---SYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS 315 (706)
Q Consensus 242 ---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (706)
+.+..... ..............+..|+.++.+|+|+..|-...+........ ...+.|.+.
T Consensus 174 gDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS-------------~vQmLf~~~ 240 (1416)
T KOG3617|consen 174 GDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDS-------------EVQMLFMGY 240 (1416)
T ss_pred CchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccc-------------hHHHHHhcc
Confidence 11111111 01111112222334567888888999888886655332211110 122334455
Q ss_pred CCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCC---cEEEEEecCCcEEEEeCCCceeeEee
Q 005254 316 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE---QYLAVATNIEQVQVYDLSSMSCSYVL 392 (706)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~~i~~~d~~~~~~~~~~ 392 (706)
...+.+...+-++.++-...... ......+..+...+ .-++++...|.++- ... .-
T Consensus 241 ~eai~~i~e~lr~~l~~v~~~G~--------------~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~------~eK-yg 299 (1416)
T KOG3617|consen 241 CEAISIIIEFLRDCLIFVLAKGT--------------SEERCAVKVSGKLGGRQGGIACSESSGVLRK------SEK-YG 299 (1416)
T ss_pred cceEEEEeeeceeeEEEecCCCc--------------hHHhhhhhhccccCCccCccccccccccccC------Ccc-hh
Confidence 55566666666665554433211 11111111111111 11333333331110 000 01
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc-------eEEEE---EeCCCcCeEEEEEecCCCeEEEEecC
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-------CCVGV---GTGHMGAVGAVAFSKKLQNFLVSGSS 462 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~ 462 (706)
......+.|+. +...+.. +..|...|.+.+|--... .-... .....+.|+.+.|.|-.. .++.-+.
T Consensus 300 ~e~ge~~~c~c--Y~~~~~~-l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~-~~avn~~ 375 (1416)
T KOG3617|consen 300 LELGEGILCMC--YGEKEIR-LWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKS-TAAVNTE 375 (1416)
T ss_pred hhcCCceEEEE--EeccceE-EEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccc-hhhhhhh
Confidence 11234566775 5555555 889999999999953221 11222 234457888999988543 3333322
Q ss_pred CCeEEE-------------EEecCCCCCCCcccccceeEEEee------cCcceEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 005254 463 DHTIKV-------------WSFDGLSDDAEQPMNLKAKAVVAA------HGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (706)
Q Consensus 463 d~~i~i-------------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 523 (706)
...+.+ |-+.... ..........+ ..-++..++.+. .-++.....+|..|++
T Consensus 376 ~~v~ll~E~~l~~~h~~~~~A~q~ss------~S~~L~hc~sGv~~~l~~~~~~~gi~l~e---~~lvvwNgr~v~~y~l 446 (1416)
T KOG3617|consen 376 EDVVLLGENSLTVKHRGKMAAIQTSS------NSFTLLHCTSGVSQDLKLSIPSAGICLGE---KQLVVWNGRTVVTYDL 446 (1416)
T ss_pred hheeeeccCchHHHHhhhhHHhhhcC------CceEEEeeccchhhhhhhccchhhheecc---ceEEEEcCceEEEEEe
Confidence 221111 1111100 00000000000 011222333322 2223345567777777
Q ss_pred CCccEEE--EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee--cccCEEEEEEEeCCCEEEEEeCC
Q 005254 524 PDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG--HTSSVLRASFLTRGAQIVSCGAD 599 (706)
Q Consensus 524 ~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~d 599 (706)
.+..... .........+++++.. +-+.+...|. |.++.+. |...+.+.. -.+.+.-+. -.|.+|+.+...
T Consensus 447 q~SG~la~~~~~tF~cet~~la~~n--qN~ycies~~-Vfvrt~q-Gtv~q~i~~seiEg~~~~ld--i~g~~l~v~t~~ 520 (1416)
T KOG3617|consen 447 QTSGSLATIQCTTFSCETTSLAIVN--QNLYCIESDK-VFVRTLQ-GTVRQEISLSEIEGVVVLLD--IMGELLIVQTVS 520 (1416)
T ss_pred cccchhHHHhhhhhccccchHhHhh--cceEEeccCc-EEEEecc-hhhhhhccchhccCceehhh--hccceeEEeehH
Confidence 5321111 1111112223333332 2234433333 6666553 433333322 223343333 357799999888
Q ss_pred CCEEEEECCCCeEEEEec--------cCCCcEEEEEEcCCCCE--EEEEeC----CCcEEEEECCchhHHHHH
Q 005254 600 GLVKLWTVRTGECIATYD--------KHEDKIWALAVGKKTEM--FATGGS----DALVNLWHDSTAAEREEA 658 (706)
Q Consensus 600 g~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~--l~~~~~----dg~i~vw~~~~~~~~~~~ 658 (706)
+.++-+|+...++..... ...+.+..+..+..|.. +..+.. =.++..||++.+......
T Consensus 521 ~~~k~~dvsr~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~ 593 (1416)
T KOG3617|consen 521 TVAKRLDVSRAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMN 593 (1416)
T ss_pred HHHHHhhhhhhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhh
Confidence 888888886554332221 22345566655555442 222222 246899999888765443
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=7.9e-10 Score=105.32 Aligned_cols=289 Identities=17% Similarity=0.256 Sum_probs=185.5
Q ss_pred eeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcc--eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC---
Q 005254 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE--IVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--- 430 (706)
Q Consensus 356 v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--- 430 (706)
+..+...| -++-++.++.. .+.+.|+...-....+-.|.. .+....|...+.....+++ .....-.+|++..
T Consensus 27 ~~a~si~p-~grdi~lAsr~-gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVs-ts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 27 FNAVSINP-SGRDIVLASRQ-GLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVS-TSNQKAIIWNLAKSSS 103 (1081)
T ss_pred ccceeecc-ccchhhhhhhc-CeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEe-cCcchhhhhhhhcCCc
Confidence 33444443 44444555543 355556654322222222222 2333444455555553444 4445556788653
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
...-..+.+|...++.+.|.|+.+..+++++-|-.+..||++.... .......-....+.++|+.....+.
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---------p~ys~~~w~s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---------PFYSTSSWRSAASQVKWNYKDPNVL 174 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc---------ceeeeecccccCceeeecccCcchh
Confidence 3344457789999999999999999999999999999999987532 2333333445567788887555566
Q ss_pred EeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEcc-CCCEEEEecCCCcEEEEEcCCCceEE-EEeecccCEEEEEEE
Q 005254 511 TGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDGSCLK-TFEGHTSSVLRASFL 587 (706)
Q Consensus 511 ~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s 587 (706)
+.+..+.|++||++.+ .++..+++|...|..++|.. ....+.+++.||+|+.||.+...... .......+|..-.+.
T Consensus 175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL 254 (1081)
T ss_pred hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence 6677888999999866 67788899999999999876 34568889999999999986543221 111234566666666
Q ss_pred eCCC--EEEEEeCCCCE---------EEEECCC-CeEEEEeccCCCcEEEEEEcC--------CCC--EEEEEeCCCcEE
Q 005254 588 TRGA--QIVSCGADGLV---------KLWTVRT-GECIATYDKHEDKIWALAVGK--------KTE--MFATGGSDALVN 645 (706)
Q Consensus 588 ~~~~--~l~~~~~dg~i---------~iwd~~~-~~~~~~~~~~~~~v~~~~~s~--------~~~--~l~~~~~dg~i~ 645 (706)
|-|. ++.---.+..+ ..|+..+ .+++..+.+|.+.|....|-. |.+ .|+|=+.|..++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 6443 22111111123 3344443 368899999999987766632 222 689999999999
Q ss_pred EEECCchhHHH
Q 005254 646 LWHDSTAAERE 656 (706)
Q Consensus 646 vw~~~~~~~~~ 656 (706)
+|.+.+.....
T Consensus 335 lWpI~~~i~~~ 345 (1081)
T KOG0309|consen 335 LWPIDSQIQRL 345 (1081)
T ss_pred eeeccHHHHHh
Confidence 99998876543
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.12 E-value=1.1e-07 Score=83.88 Aligned_cols=204 Identities=16% Similarity=0.179 Sum_probs=147.7
Q ss_pred ccceEEcC-CCCEEEEeeCC--eEEEEEccCCeEEEeecCCCcc--EEEEEEccCCCEEEEE-----eccCeEEEEECC-
Q 005254 22 GGPLVVSS-DGSFIACACGE--SINIVDLSNASIKSTIEGGSDT--ITALALSPDDKLLFSS-----GHSREIRVWDLS- 90 (706)
Q Consensus 22 ~~~~~~s~-dg~~l~~~~~~--~i~i~d~~~~~~~~~l~~~~~~--i~~l~~s~~~~~l~s~-----~~d~~i~iwd~~- 90 (706)
++.++.+| ++..++++-.- ...+||..+++..+.+....+. --.-.||+||++|++. +..|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 45799999 55556666543 7999999999988777543332 2357899999999986 346899999999
Q ss_pred CCeEEEEeeccCCCeEEEEECCCCCEEEEec------------------CCCcEEEEECCCCeEEEE--e--eCCCCcEE
Q 005254 91 TLKCLRSWKGHDGPAIGMACHPSGGLLATAG------------------ADRKVLVWDVDGGFCTHY--F--KGHKGVVS 148 (706)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------------~d~~i~vw~~~~~~~~~~--~--~~~~~~v~ 148 (706)
+.+.+.++..|.-.-..+.+.|||+.|+++- .+.++..-|..+|+.+.. + .-|...|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 7788999998888888999999998888863 134677778888888766 4 33788899
Q ss_pred EEEEcCCCCceEEEEEe-cCC-------eEEEEECCCCeeEEEee-------cccceEEEEEEecCCCEEEEE-eCCCEE
Q 005254 149 SILFHPDTDKSLLFSGS-DDA-------TVRVWDLLAKKCVATLD-------KHFSRVTSMAITSDGSTLISA-GRDKVV 212 (706)
Q Consensus 149 ~~~~~~~~~~~~l~~~~-~dg-------~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~-~~dg~i 212 (706)
.+++.++|. ++.+. ..| -|-+++. ++.+..+. .-.+.+-++++++++.++++. -..+.+
T Consensus 167 HLa~~~~G~---V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 167 HLAVDGDGT---VAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred eEEecCCCc---EEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 999999876 44433 222 2333432 33222221 234678999999999877554 467899
Q ss_pred EEEeCCCCcceeeecCcc
Q 005254 213 NLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~ 230 (706)
.+||..+++.+...+..+
T Consensus 242 ~~~d~~tg~~~~~~~l~D 259 (305)
T PF07433_consen 242 AVWDAATGRLLGSVPLPD 259 (305)
T ss_pred EEEECCCCCEeeccccCc
Confidence 999999999887766543
No 295
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.10 E-value=9.4e-07 Score=84.51 Aligned_cols=164 Identities=20% Similarity=0.205 Sum_probs=97.4
Q ss_pred cCCCCEEEEeeC----------CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEE
Q 005254 28 SSDGSFIACACG----------ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRS 97 (706)
Q Consensus 28 s~dg~~l~~~~~----------~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 97 (706)
|||++++++... +.+.|||+.+++....... ...+....|||+|+++|... ++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 799999998543 4699999999877554433 67789999999999999875 56899999988754432
Q ss_pred -eecc----------------CCCeEEEEECCCCCEEEEecC-CCcEEEEECCCCeEEEEeeCCC---CcEEEEEEcCCC
Q 005254 98 -WKGH----------------DGPAIGMACHPSGGLLATAGA-DRKVLVWDVDGGFCTHYFKGHK---GVVSSILFHPDT 156 (706)
Q Consensus 98 -~~~~----------------~~~v~~~~~s~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~---~~v~~~~~~~~~ 156 (706)
..+. -+.-.++.||||+++||.... +..|..+.+.. ..... ..+..+.+-.-|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~------~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD------YSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE------ESSSTESS-EEEEEE--BTT
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeec------cCCccccCCcccccccCCCC
Confidence 1220 112356889999999998753 34444443210 11111 134444443333
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEE-Ee----ecccceEEEEEEecCCCEEEE
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVA-TL----DKHFSRVTSMAITSDGSTLIS 205 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~-~~----~~~~~~v~~~~~~~~~~~l~~ 205 (706)
+.+-. -.+.++|+.+++... .. ......+..+.|.++++.++.
T Consensus 153 ~~np~------v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 153 DPNPR------VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp S---E------EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CcCCc------eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 33111 236778988887532 11 123457889999999874443
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.09 E-value=8.8e-07 Score=80.26 Aligned_cols=216 Identities=14% Similarity=0.047 Sum_probs=141.6
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEe-cCCCeEEEEecCCCeEEEEEecCCCCCCCccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 484 (706)
+.+..+.++++-...+.|..|+..+++...... .. ...+++. +++. ++.+...+ +.++|...++ .
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~--~~G~~~~~~~g~--l~v~~~~~-~~~~d~~~g~--------~ 72 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG--PNGMAFDRPDGR--LYVADSGG-IAVVDPDTGK--------V 72 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SS--EEEEEEECTTSE--EEEEETTC-EEEEETTTTE--------E
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CC--CceEEEEccCCE--EEEEEcCc-eEEEecCCCc--------E
Confidence 666567767777788999999998886654322 22 6777777 5643 44454444 4555766542 1
Q ss_pred ceeEEEe--e-cCcceEEEEEcCCCCEEEEeeCC--------CcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEE-
Q 005254 485 KAKAVVA--A-HGKDINSLAVAPNDSLVCTGSQD--------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI- 552 (706)
Q Consensus 485 ~~~~~~~--~-~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~- 552 (706)
....... . .....+.+++.|+|++.++.... |.|..++.. ++... +...-.....++|+|+++.|+
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETTSSEEEE
T ss_pred EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCcchheee
Confidence 1111111 1 34567899999999977776543 457777766 44333 333456678999999998775
Q ss_pred EecCCCcEEEEEcCCCce----EEEE---eecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEE
Q 005254 553 TASGDKTIKIWSISDGSC----LKTF---EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 625 (706)
Q Consensus 553 ~~~~dg~i~iwd~~~~~~----~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 625 (706)
+-+..+.|..+++..... ...+ ....+..-.+++..+|+..++....+.|.++|.. |+.+..+......+++
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~ 229 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTN 229 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEE
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEE
Confidence 556788899999863322 1222 2112237789999999988888888999999987 9999888866668999
Q ss_pred EEE-cCCCCEEEEE
Q 005254 626 LAV-GKKTEMFATG 638 (706)
Q Consensus 626 ~~~-s~~~~~l~~~ 638 (706)
++| .++.+.|...
T Consensus 230 ~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 230 CAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEESTTSSEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 999 4665555443
No 297
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=7.6e-10 Score=101.77 Aligned_cols=250 Identities=15% Similarity=0.232 Sum_probs=175.4
Q ss_pred eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC-------ceEEEEEeCCCcCeEEEEEecCCCeEEEEec
Q 005254 389 SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 389 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 461 (706)
...+.+|...+..+. ...+.+. +++++.|.+|++|.++. ..+..+++.|..+|..+.|-.+.+ .+ .+
T Consensus 728 L~nf~GH~~~iRai~--AidNENS-FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i--~S 801 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIA--AIDNENS-FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SI--AS 801 (1034)
T ss_pred eecccCcHHHhHHHH--hcccccc-eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-ee--ee
Confidence 446778998888886 5455555 99999999999998763 345667889999999999998855 34 45
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe-eCCCcEEEEeCCCccEEEEEee-----c
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLPDLVSVVTFRG-----H 535 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----~ 535 (706)
.||.|.+||--.+..-... ......+....|.|+.- -+...+..| +...+|+++|.+..+-...++- .
T Consensus 802 cD~giHlWDPFigr~Laq~-----~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQM-----EDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred ccCcceeecccccchhHhh-----hcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 6788999996543211100 00111112222333321 134445444 6788999999998877666653 4
Q ss_pred CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEE-EECCCCeEEE
Q 005254 536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL-WTVRTGECIA 614 (706)
Q Consensus 536 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~ 614 (706)
+.-+.+++..+.|++++.+-.+|.|.+.|.++|+.+..++...-....++ .|.++.|+....|.++.+ |...+|....
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~ 954 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHL 954 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeee
Confidence 45688999999999999999999999999999999988875544444444 356678888888999999 9888887766
Q ss_pred EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 615 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 615 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+.+....+..-+. .-|.-|+++.....+.+|.-....
T Consensus 955 q~kpppepahflq--svgpSLV~a~~Gn~lgVYad~a~~ 991 (1034)
T KOG4190|consen 955 QDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYADSAEL 991 (1034)
T ss_pred ccCCCCcchhhhh--ccCceeEEeccCcEEEEEecchhh
Confidence 6665444433222 246678888888888998754443
No 298
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=5.5e-09 Score=88.92 Aligned_cols=250 Identities=22% Similarity=0.302 Sum_probs=165.7
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce-----EEEEEeCCC------------cCeEEEEEec-CCCeEEE
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-----CVGVGTGHM------------GAVGAVAFSK-KLQNFLV 458 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~------------~~v~~~~~~~-~~~~~l~ 458 (706)
..|+++. +...+.+ +++|...|+|.+|.-+... ....++.|. ..|..+.|.. .++..++
T Consensus 27 d~ItaVe--fd~tg~Y-latGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 27 DKITAVE--FDETGLY-LATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ceeeEEE--eccccce-EeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 4566665 6666666 9999999999999765432 112233332 3566677654 4556677
Q ss_pred EecCCCeEEEEEecCCCC------------------CCCcccc--------------ccee-EEEeecCcceEEEEEcCC
Q 005254 459 SGSSDHTIKVWSFDGLSD------------------DAEQPMN--------------LKAK-AVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 459 ~~~~d~~i~i~~~~~~~~------------------~~~~~~~--------------~~~~-~~~~~~~~~i~~~~~s~~ 505 (706)
..+.|.+|++|.+..... ....+.. ..+. .....|...|.++.+..|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 888999999999864410 0000000 0011 112457777899999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCcc---EEEEEeecCC-----cEEEEEEccC-CCEEEEecCCCcEEEEEcCCCce------
Q 005254 506 DSLVCTGSQDRTACVWRLPDLV---SVVTFRGHKR-----GIWSVEFSPV-DQVVITASGDKTIKIWSISDGSC------ 570 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~-----~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~------ 570 (706)
...++++. |-.|.+|++.-.. .+..+++|.. -|++..|+|. ...+...+..|.|++-|++...+
T Consensus 184 ~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 98888764 6789999986432 2334455543 4788999995 35566677889999999973211
Q ss_pred EE----------EEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC-eEEEEeccCC------------CcE---E
Q 005254 571 LK----------TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG-ECIATYDKHE------------DKI---W 624 (706)
Q Consensus 571 ~~----------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~------------~~v---~ 624 (706)
+. -+.+-...|..+.|+++|+|+++-+. -+|++||+... .++.++.-|. +.| .
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 11 11122357888999999999998654 67999999754 4677765442 233 3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 625 ALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 625 ~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
.+.||.|.+.+++|+..+..-+|-..+
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EEEecCCcccccccccccceeeecccc
Confidence 578999999999999888888887433
No 299
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.08 E-value=1.8e-06 Score=72.17 Aligned_cols=110 Identities=11% Similarity=0.018 Sum_probs=80.2
Q ss_pred CCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEE
Q 005254 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTS 193 (706)
Q Consensus 114 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 193 (706)
..+++.|+..+.+.--|..+|+.+..-. -..+|.+-+.. -++. ++.|+..|.+++.+..+|.....+.....-=..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdf--VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDF--VVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCE--EEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 3467777888888888999998776533 34445444443 2455 899999999999999999887776543322223
Q ss_pred EEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 194 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 194 ~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
....+++..++.++.|++.+..|.++..++....
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 3456789999999999999999998877665543
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.07 E-value=1.2e-06 Score=79.30 Aligned_cols=219 Identities=11% Similarity=0.030 Sum_probs=142.2
Q ss_pred EeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE
Q 005254 358 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 437 (706)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 437 (706)
+..|.+.++.++.+-...+.|..|+..++......... ...+. +..++.. ++.+.. +.+.++|..+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---~~G~~--~~~~~g~-l~v~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---PNGMA--FDRPDGR-LYVADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS---EEEEE--EECTTSE-EEEEET-TCEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---CceEE--EEccCCE-EEEEEc-CceEEEecCCCcEEEEe
Confidence 34566667777888778899999999988765422222 33443 5534565 444444 44556699888655444
Q ss_pred eC-----CCcCeEEEEEecCCCeEEEEecCC--------CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 438 TG-----HMGAVGAVAFSKKLQNFLVSGSSD--------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 438 ~~-----~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
.. .......+++.++|. +.++.... |.+..++.. . ........-...+.++|+|
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~-----------~~~~~~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G-----------KVTVVADGLGFPNGIAFSP 143 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S-----------EEEEEEEEESSEEEEEEET
T ss_pred eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C-----------eEEEEecCcccccceEECC
Confidence 32 456778899999988 55554432 445555544 1 2223333345578999999
Q ss_pred CCCEEE-EeeCCCcEEEEeCCCccE----EEEE---eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee
Q 005254 505 NDSLVC-TGSQDRTACVWRLPDLVS----VVTF---RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 576 (706)
Q Consensus 505 ~~~~l~-~~~~dg~i~i~d~~~~~~----~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 576 (706)
+++.|+ +-+..+.|..+++..... ...+ ....+..-.+++..+|++.++....+.|.++|.+ |+.+..+..
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~ 222 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL 222 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC
Confidence 998776 556678899998853221 1222 2222347889999999988888788999999976 999888887
Q ss_pred cccCEEEEEEE-eCCCEEEEEe
Q 005254 577 HTSSVLRASFL-TRGAQIVSCG 597 (706)
Q Consensus 577 ~~~~i~~~~~s-~~~~~l~~~~ 597 (706)
....+++++|. ++.+.|+..+
T Consensus 223 p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 223 PVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEe
Confidence 76789999995 5666665543
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.05 E-value=6e-07 Score=81.38 Aligned_cols=220 Identities=11% Similarity=0.023 Sum_probs=141.1
Q ss_pred CCcEEEEeCCCceeeEeeeCCc--ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecC
Q 005254 375 IEQVQVYDLSSMSCSYVLAGHS--EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 452 (706)
Q Consensus 375 ~~~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (706)
+|.|..+|..+++.+....... ....+. ..+.++. +++++.++.+..||..+|+.+....... .+.......+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT---AVPDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAPVVDG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET---EEEETTE-EEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGEEEET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce---EEEeCCE-EEEEcCCCEEEEEECCCCCEEEEeeccc-cccceeeecc
Confidence 5789999999999887775421 222211 2335666 6667899999999999999988776522 2222122233
Q ss_pred CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE-eec--C-cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE
Q 005254 453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAH--G-KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 453 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 528 (706)
+ .++.+..++.+..+|..+++ ..... ... . ..........++..++++..++.|..+|+.+|+.
T Consensus 77 ~--~v~v~~~~~~l~~~d~~tG~----------~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 77 G--RVYVGTSDGSLYALDAKTGK----------VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp T--EEEEEETTSEEEEEETTTSC----------EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE
T ss_pred c--ccccccceeeeEecccCCcc----------eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE
Confidence 2 46666678899999977664 22221 111 0 1112223333477888888899999999999999
Q ss_pred EEEEeecCCc----------EEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeC
Q 005254 529 VVTFRGHKRG----------IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 529 ~~~~~~~~~~----------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 598 (706)
+......... +..-....++ .++.+..++.+.-+|+.+++.+.... ...+.. ....++..|+.++.
T Consensus 145 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~ 220 (238)
T PF13360_consen 145 LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSS 220 (238)
T ss_dssp EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEET
T ss_pred EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeC
Confidence 8887764422 1122222344 67777777754444999998664332 223222 25577889998889
Q ss_pred CCCEEEEECCCCeEEEE
Q 005254 599 DGLVKLWTVRTGECIAT 615 (706)
Q Consensus 599 dg~i~iwd~~~~~~~~~ 615 (706)
++.|..||+.+|+.+.+
T Consensus 221 ~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 221 DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCCEEeE
Confidence 99999999999998653
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.05 E-value=2.3e-07 Score=84.06 Aligned_cols=218 Identities=17% Similarity=0.170 Sum_probs=138.5
Q ss_pred CCeEEEEEccCCeEEEeecCC--CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCE
Q 005254 39 GESINIVDLSNASIKSTIEGG--SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGL 116 (706)
Q Consensus 39 ~~~i~i~d~~~~~~~~~l~~~--~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 116 (706)
.+.|..+|+.+|+.+-...-. .....+. ..+++.++++++.++.|..||..+|+.+.++.. ...+.... ..++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 357899999999988666431 1222222 333566777778999999999999999988875 23222212 223456
Q ss_pred EEEecCCCcEEEEECCCCeEEEEe-eCCC---CcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccce--
Q 005254 117 LATAGADRKVLVWDVDGGFCTHYF-KGHK---GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR-- 190 (706)
Q Consensus 117 l~~~~~d~~i~vw~~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-- 190 (706)
+++++.++.+..+|..+|+.+... .... ..........+++. ++.+..++.|..+|+.+|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR--LYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE--EEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCE--EEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 666667889999999999998874 3221 11122222222454 788888999999999999998877654322
Q ss_pred --------EEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccc
Q 005254 191 --------VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS 262 (706)
Q Consensus 191 --------v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (706)
+..-....++ .++.++.++.+..+|+.+++.+...+ ........ ...+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~-~~~~~-------------------- 213 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLP-SVDGG-------------------- 213 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECE-ECCCT--------------------
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCc-eeeCC--------------------
Confidence 1222233344 77777777754444999998665333 22222211 22221
Q ss_pred cceEEEEecCCCeEEEEECCCCeEE
Q 005254 263 LEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 263 ~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
.++..+.++.+..||..+++..
T Consensus 214 ---~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 214 ---TLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ---EEEEEETTTEEEEEETTTTEEE
T ss_pred ---EEEEEeCCCEEEEEECCCCCEE
Confidence 5666668999999999998653
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=9.2e-10 Score=95.01 Aligned_cols=169 Identities=18% Similarity=0.260 Sum_probs=127.2
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc-
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL- 526 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~- 526 (706)
+|+-+-..+-++.+.+..+-+-++.++- ...+. ..+.|.++.|...++++..|+.+|.|..+|++..
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~-----------~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn 285 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGH-----------QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN 285 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccc-----------ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecc
Confidence 4443322234666777778888887652 22222 5677888999988999999999999999999865
Q ss_pred ----cEEEEEeecCCcEEEEEEcc-CCCEEEEecCCCcEEEEEcCCCce---EEEEeecccCEEEE--EEEeCCCEEEEE
Q 005254 527 ----VSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDGSC---LKTFEGHTSSVLRA--SFLTRGAQIVSC 596 (706)
Q Consensus 527 ----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~--~~s~~~~~l~~~ 596 (706)
.+...+ -|...|+++..-. ++++|.+.+.+|.|++||++--++ +.++++|...-..+ ...+....++++
T Consensus 286 qG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~ 364 (425)
T KOG2695|consen 286 QGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV 364 (425)
T ss_pred cCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEc
Confidence 233333 3889999998777 788999999999999999987777 88999987654444 334566789999
Q ss_pred eCCCCEEEEECCCCeEEEEeccCC----CcEEEEEEc
Q 005254 597 GADGLVKLWTVRTGECIATYDKHE----DKIWALAVG 629 (706)
Q Consensus 597 ~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~s 629 (706)
+.|-..+||.+++|..+.+++... ..+.+++|+
T Consensus 365 GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 999999999999999999887432 345666664
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.01 E-value=4.5e-07 Score=77.37 Aligned_cols=201 Identities=13% Similarity=0.156 Sum_probs=127.8
Q ss_pred EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 005254 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL 526 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 526 (706)
++.+.+|+ +++.-+|..|.+-..+..-... .............-..++||||+.+||.+...|+|++||+...
T Consensus 3 ~~~~~~Gk--~lAi~qd~~iEiRsa~Ddf~si-----~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 3 LALSSDGK--LLAILQDQCIEIRSAKDDFSSI-----IGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS 75 (282)
T ss_pred eeecCCCc--EEEEEeccEEEEEeccCCchhe-----eEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc
Confidence 45566665 5555566666665544321100 0011122223344578999999999999999999999998754
Q ss_pred cEEEEEee-------cCCcEEEEEEccCC------CEEEEecCCCcEEEEEcCCC-----ceEEEEee---cccCEEEEE
Q 005254 527 VSVVTFRG-------HKRGIWSVEFSPVD------QVVITASGDKTIKIWSISDG-----SCLKTFEG---HTSSVLRAS 585 (706)
Q Consensus 527 ~~~~~~~~-------~~~~v~~~~~s~~~------~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~---~~~~i~~~~ 585 (706)
. +..+.. -...|..+.|.+.. ..|++-..+|.++=|-+..+ +....+.. +...|.++.
T Consensus 76 ~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 76 E-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV 154 (282)
T ss_pred e-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence 3 333332 22456677775532 24666677888887776432 22333332 356899999
Q ss_pred EEeCCCEEEEEeCC-C----------CEEEEECCCCeEEEE---------------------e--------ccCCCcEEE
Q 005254 586 FLTRGAQIVSCGAD-G----------LVKLWTVRTGECIAT---------------------Y--------DKHEDKIWA 625 (706)
Q Consensus 586 ~s~~~~~l~~~~~d-g----------~i~iwd~~~~~~~~~---------------------~--------~~~~~~v~~ 625 (706)
++|.-+.|++|+.. . -+.-|.+-++.+-.. + ....+.|..
T Consensus 155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~k 234 (282)
T PF15492_consen 155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFK 234 (282)
T ss_pred EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEE
Confidence 99998888776642 1 256676643221110 0 013567899
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 626 LAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 626 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
|..||||..||+...+|.|.+|++..-...
T Consensus 235 mSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 235 MSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred EEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 999999999999999999999999876544
No 305
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.01 E-value=6.6e-06 Score=68.96 Aligned_cols=148 Identities=16% Similarity=0.048 Sum_probs=100.9
Q ss_pred EccCC-CEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCc
Q 005254 68 LSPDD-KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146 (706)
Q Consensus 68 ~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 146 (706)
..+|. .+++.|+..+.+.--|.++|..+.+-. -...|.+-+.- -|.+++.|+..|.+++.+..+|++...+.....-
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 33444 456677888889999999998876543 22333332222 4678999999999999999999888777643322
Q ss_pred EEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 147 v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
-......+++. ++..|+.|++.+..|..+..++...+-..+-..+-+..|....|+.+...|.+.--..++
T Consensus 96 k~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 96 KVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred ccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 22233445555 499999999999999999999888765555555556666444566666667665554443
No 306
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=99.00 E-value=7.2e-06 Score=73.58 Aligned_cols=174 Identities=19% Similarity=0.177 Sum_probs=111.7
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe----------ccCeEEEEECCCCeEEEEeeccCC-------
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----------HSREIRVWDLSTLKCLRSWKGHDG------- 103 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~------- 103 (706)
.++++|..+++.+..+... -.-.+.+|||++.+++++ ..-.|.+||.++..+...+.-..+
T Consensus 18 rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred eEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 7999999999988877653 233477899999998763 234799999999988876543221
Q ss_pred CeEEEEECCCCCEEEEe--cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC-CCee
Q 005254 104 PAIGMACHPSGGLLATA--GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKC 180 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~ 180 (706)
....+++|.|++++++. +-..+|.|-|+..++.+..+. -.+...- -|.++. -+.+-+.||.+.-..+. .|+.
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~-~PGC~~i---yP~~~~-~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID-TPGCWLI---YPSGNR-GFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE-GTSEEEE---EEEETT-EEEEEETTSCEEEEEETSTSSE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec-CCCEEEE---EecCCC-ceEEEecCCceEEEEECCCCCE
Confidence 12346889999998885 455789999999999888776 2232222 232222 17788999999988887 4554
Q ss_pred EEEe----ecccce-EEEEEEecCCCEEEEEeCCCEEEEEeCCCCc
Q 005254 181 VATL----DKHFSR-VTSMAITSDGSTLISAGRDKVVNLWDLRDYS 221 (706)
Q Consensus 181 ~~~~----~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 221 (706)
.... .....+ +..-++...+..++-.+.+|.|+--|+....
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 4221 111111 2233344455556666778877777765443
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.3e-08 Score=89.82 Aligned_cols=281 Identities=16% Similarity=0.090 Sum_probs=186.9
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc---eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC-CCcEEEEeC
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK-DNSVRLWDS 428 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~ 428 (706)
...|..+.. ...+++..++.||.+..|....- +.+..+..|...+.++. . .-+.+++.+.+. |..++++|+
T Consensus 9 rd~i~hv~~--tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~--~-S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 9 RDVITHVFP--TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLA--V-SYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cceeeeEee--ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhh--c-cccceeEeeccCcccceeEEEe
Confidence 334444333 36678999999999999987652 33445566777777774 3 445555888777 999999998
Q ss_pred CCceEEEEEeCCCcCeEEEEEecCC-C--eEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 429 ESRCCVGVGTGHMGAVGAVAFSKKL-Q--NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~-~--~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
++-..+..++...-+=.+-.+...| . .+.++...++.+.++|-.... .+......-|..+|.++.+.+-
T Consensus 84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~--------~q~~~fkklH~sPV~~i~y~qa 155 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF--------CQDGYFKKLHFSPVKKIRYNQA 155 (558)
T ss_pred eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCc--------CccceecccccCceEEEEeecc
Confidence 8765543322211111111111122 1 133344567888998865432 1123344558899999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCC------ccE---------EEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce
Q 005254 506 DSLVCTGSQDRTACVWRLPD------LVS---------VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 570 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~------~~~---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 570 (706)
+...++....|.|.-|.... .+. +..+.......+++.|+|++..+.+-+.|..|++++.++++.
T Consensus 156 ~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 156 GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 99999999999999998763 111 111222455678999999999999999999999999999877
Q ss_pred EEEEee--------------------------------cc-cCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec
Q 005254 571 LKTFEG--------------------------------HT-SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617 (706)
Q Consensus 571 ~~~~~~--------------------------------~~-~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (706)
++.+.. |. ..-+.+.|...|++|+.++-=| |++.++.++++++.+-
T Consensus 236 vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 236 VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 665541 11 2345678888999999988766 8999999998877652
Q ss_pred c------------------CCCc-------EEEEEEcCCCCEEEEEeCCCcEEEE
Q 005254 618 K------------------HEDK-------IWALAVGKKTEMFATGGSDALVNLW 647 (706)
Q Consensus 618 ~------------------~~~~-------v~~~~~s~~~~~l~~~~~dg~i~vw 647 (706)
. +... =..+.+-+|..+++++-....++++
T Consensus 315 k~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 315 KDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred cchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 1 0000 0112355677777777777778877
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.98 E-value=3.1e-06 Score=74.91 Aligned_cols=146 Identities=19% Similarity=0.193 Sum_probs=102.9
Q ss_pred EEEEEcc-CCCEEEEEeccC-eEEEEECCCCeEEEEeeccCCCe--EEEEECCCCCEEEEec-----CCCcEEEEECC-C
Q 005254 64 TALALSP-DDKLLFSSGHSR-EIRVWDLSTLKCLRSWKGHDGPA--IGMACHPSGGLLATAG-----ADRKVLVWDVD-G 133 (706)
Q Consensus 64 ~~l~~s~-~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~-----~d~~i~vw~~~-~ 133 (706)
..++.+| ++..++.+-.-| ...+||..+++....+....+.- -.-+||+||++|++.- ..|.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 4678889 455666666544 47899999999888776543332 2478999999999863 35889999998 6
Q ss_pred CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec----------------CCeEEEEECCCCeeEEE--e--ecccceEEE
Q 005254 134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD----------------DATVRVWDLLAKKCVAT--L--DKHFSRVTS 193 (706)
Q Consensus 134 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----------------dg~i~vwd~~~~~~~~~--~--~~~~~~v~~ 193 (706)
-+.+..+..|.-....+.+.||++..+++-|+- +..+.+-|..+|+.+.. + ..|.-.+..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 778888888888888999999987745544431 23355556677776665 3 236667888
Q ss_pred EEEecCCCEEEEEeCC
Q 005254 194 MAITSDGSTLISAGRD 209 (706)
Q Consensus 194 ~~~~~~~~~l~~~~~d 209 (706)
+++.++|..++..-..
T Consensus 168 La~~~~G~V~~a~Q~q 183 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQ 183 (305)
T ss_pred EEecCCCcEEEEEecC
Confidence 8888777655444333
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.95 E-value=7e-09 Score=86.00 Aligned_cols=165 Identities=15% Similarity=0.172 Sum_probs=107.5
Q ss_pred EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe-EEEEeeccCCCeEEEEECCCCCEEEEec-----CCCcEE
Q 005254 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CLRSWKGHDGPAIGMACHPSGGLLATAG-----ADRKVL 127 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~d~~i~ 127 (706)
+.+.-|+++-.+-+.+-.+..+++++.||.+.+.+.+.-. ..+.+..-...-.+.+.-..+..+.+++ .-+..+
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY 162 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence 4444455544444555567789999999999999986521 1111111111111222333444554432 123456
Q ss_pred EEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeE-EEeecccceEEEEEEec-CCCEEEE
Q 005254 128 VWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV-ATLDKHFSRVTSMAITS-DGSTLIS 205 (706)
Q Consensus 128 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~ 205 (706)
.|+++-.+.+..-+.....|.+++-+|. +.+++++|+.||.+-+||.+..... ..+..|..+++.+.|+| ++..|++
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft 241 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT 241 (319)
T ss_pred eecccccccccccccccccchhhhCCcc-cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE
Confidence 6666544333222223344999999997 5568899999999999999887533 34578999999999998 5678999
Q ss_pred EeCCCEEEEEeCCC
Q 005254 206 AGRDKVVNLWDLRD 219 (706)
Q Consensus 206 ~~~dg~i~~w~~~~ 219 (706)
+++||.+..||..+
T Consensus 242 ~sedGslw~wdas~ 255 (319)
T KOG4714|consen 242 CSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCcEEEEcCCC
Confidence 99999999999875
No 310
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.90 E-value=9.4e-06 Score=72.88 Aligned_cols=239 Identities=18% Similarity=0.178 Sum_probs=152.7
Q ss_pred ceEEcCCCCEEEEeeC-----------CeEEEEEccCCeEEEeecCCC---c----cEEEEEEccCCCEEEEE--eccCe
Q 005254 24 PLVVSSDGSFIACACG-----------ESINIVDLSNASIKSTIEGGS---D----TITALALSPDDKLLFSS--GHSRE 83 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~-----------~~i~i~d~~~~~~~~~l~~~~---~----~i~~l~~s~~~~~l~s~--~~d~~ 83 (706)
.+++||||+.++++.- +.|.+||.++......+.-.. . ....+++|.||+++.+. +....
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 5889999999998642 259999999998776443222 1 22457899999998876 45668
Q ss_pred EEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC-CCeEEEE----eeCCCCcE-EEEEEcCCCC
Q 005254 84 IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD-GGFCTHY----FKGHKGVV-SSILFHPDTD 157 (706)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~-~~~~~~~----~~~~~~~v-~~~~~~~~~~ 157 (706)
|.|-|++.++.+.++... +...-.-.. ...+.+.|.||.+.-..++ .|+.... |.....++ ..-++...+.
T Consensus 120 VtVVDl~~~kvv~ei~~P-GC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTP-GCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp EEEEETTTTEEEEEEEGT-SEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred EEEEECCCCceeeeecCC-CEEEEEecC--CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 999999999999888743 322222222 2457777889999999887 5654422 11122222 2333444434
Q ss_pred ceEEEEEecCCeEEEEECCCCeeE--EEeec----------ccceEEEEEEecCCCEEEEEeC--------C--CEEEEE
Q 005254 158 KSLLFSGSDDATVRVWDLLAKKCV--ATLDK----------HFSRVTSMAITSDGSTLISAGR--------D--KVVNLW 215 (706)
Q Consensus 158 ~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~----------~~~~v~~~~~~~~~~~l~~~~~--------d--g~i~~w 215 (706)
. ++--+.+|.|+--|+...... ..+.. -.+.-.-+++++..++|++.-. + ..|-++
T Consensus 197 ~--~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 197 R--LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp E--EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred e--EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 4 555778888888887655422 11110 1233445788877666665421 1 268888
Q ss_pred eCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEE-EecCCCeEEEEECCCCeEEee
Q 005254 216 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI-TVGERGIVRMWNADSACLYEQ 289 (706)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~ 289 (706)
|+.+++.+..++....+.++..+.+..+ .++ ....++.+.+||..+++....
T Consensus 275 D~~t~krv~Ri~l~~~~~Si~Vsqd~~P----------------------~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 275 DLKTHKRVARIPLEHPIDSIAVSQDDKP----------------------LLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp ETTTTEEEEEEEEEEEESEEEEESSSS-----------------------EEEEEETTTTEEEEEETTT--EEEE
T ss_pred ECCCCeEEEEEeCCCccceEEEccCCCc----------------------EEEEEcCCCCeEEEEeCcCCcEEee
Confidence 9999999999999888888888776653 454 446789999999999866543
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=5.6e-07 Score=88.33 Aligned_cols=215 Identities=16% Similarity=0.203 Sum_probs=142.0
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC-----eEEEEEecCCCCCCCc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQ 480 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~~~~~~ 480 (706)
+.+.+.. ++.|+.+|.|.+++-. -+.+..++.+...+...-+.-+++++|++.+.|+ .+++|+++.......
T Consensus 31 ~~s~~~~-vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s- 107 (933)
T KOG2114|consen 31 CSSSTGS-VVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS- 107 (933)
T ss_pred EcCCCce-EEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC-
Confidence 4566666 9999999999888743 3333556666665333334445556888877664 489999987642221
Q ss_pred ccccceeEEE----eecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC----CccEEEEEeecCCcEEEEEEccCCCEEE
Q 005254 481 PMNLKAKAVV----AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP----DLVSVVTFRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 481 ~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 552 (706)
+.-....... .....++.+++++.+-+.+|+|..+|.|..+.-. .+....-......+|+.+++..+++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 1111001111 1246778999999999999999999999988532 1222222233567899999999988744
Q ss_pred EecCCCcEEEEEcCCCce-EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec-cCCCcEE
Q 005254 553 TASGDKTIKIWSISDGSC-LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIW 624 (706)
Q Consensus 553 ~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~ 624 (706)
.+.....|.+|.+....+ ...+..|..+..|..|++....+++++. ..+.+|+.....+-..+. +|.....
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEE
Confidence 444455699999974442 4557778888999999876654666554 569999988766666666 6655443
No 312
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.89 E-value=4.7e-06 Score=81.29 Aligned_cols=182 Identities=14% Similarity=0.039 Sum_probs=111.0
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecC---C-CeEEEEEecCCCCCCCcccc
Q 005254 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---D-HTIKVWSFDGLSDDAEQPMN 483 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d-~~i~i~~~~~~~~~~~~~~~ 483 (706)
++++.+..+.-..+.+.+.|.++.+....+.-. +....++++++++ ++++.+. . +++...+.... .
T Consensus 202 nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk-~afvTsyNsE~G~tl~em~a~e~--d------ 271 (635)
T PRK02888 202 NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGK-YAFSTCYNSEEGVTLAEMMAAER--D------ 271 (635)
T ss_pred CCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCC-EEEEeccCcccCcceeeeccccC--c------
Confidence 344443333334456677787776666554432 2446678888888 4444432 1 22222221110 0
Q ss_pred cceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC----c-cEEEEEeecCCcEEEEEEccCCCEEEEecC-C
Q 005254 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD----L-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-D 557 (706)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~----~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d 557 (706)
....+. -..+ -++.++|++...+ ++.|.+.|..+ + +.+..+. -......+.++|||+++++++. +
T Consensus 272 --~~vvfn--i~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 272 --WVVVFN--IARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred --eEEEEc--hHHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCC
Confidence 000000 0000 1334578877763 67899999988 3 4444444 5566788999999999877654 8
Q ss_pred CcEEEEEcCCCce------------EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 558 KTIKIWSISDGSC------------LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 558 g~i~iwd~~~~~~------------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
.++.|.|+.+.+. ..+..- .......+|.++|....+..-|..|..||+.+
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 8999999987552 333332 23445689999998888888999999999976
No 313
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.88 E-value=1.1e-07 Score=81.12 Aligned_cols=78 Identities=18% Similarity=0.425 Sum_probs=61.3
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe-----EEEEeeCCC------------CcEEEEEEcCCCCceEEEE
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF-----CTHYFKGHK------------GVVSSILFHPDTDKSLLFS 163 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~~~~l~~ 163 (706)
....|+++.|...|.||++|...|.|.++.-+... ....+++|. ..|..+.|..++...-++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34678999999999999999988999999875433 223345554 3578899988887777888
Q ss_pred EecCCeEEEEECCCC
Q 005254 164 GSDDATVRVWDLLAK 178 (706)
Q Consensus 164 ~~~dg~i~vwd~~~~ 178 (706)
.+.|.+|++|.+...
T Consensus 105 stNdktiKlWKiyek 119 (460)
T COG5170 105 STNDKTIKLWKIYEK 119 (460)
T ss_pred ecCCceeeeeeeecc
Confidence 889999999988654
No 314
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.87 E-value=1e-08 Score=61.26 Aligned_cols=39 Identities=38% Similarity=0.627 Sum_probs=36.9
Q ss_pred CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEE
Q 005254 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD 88 (706)
Q Consensus 50 ~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd 88 (706)
+++++.+.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 315
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=1.2e-08 Score=88.42 Aligned_cols=150 Identities=20% Similarity=0.350 Sum_probs=121.8
Q ss_pred EEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC-----eEEEEeeccCCCeEEEE
Q 005254 35 ACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL-----KCLRSWKGHDGPAIGMA 109 (706)
Q Consensus 35 ~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~~ 109 (706)
++|....+.+-|+.+|.... +. ..+.|.++.|...+.++..|..+|.|...|+..+ .+...+- |...|+++.
T Consensus 229 s~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred cccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 34444479999999987654 33 5678999999999999999999999999999764 3445555 889999998
Q ss_pred ECC-CCCEEEEecCCCcEEEEECCCCeE---EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEee
Q 005254 110 CHP-SGGLLATAGADRKVLVWDVDGGFC---THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD 185 (706)
Q Consensus 110 ~s~-~~~~l~~~~~d~~i~vw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 185 (706)
.-. ++++|.+.+.+|.|++||..--++ +..+.+|-..-.-+-++-+.....+++++.|...+||.+..+..+.+++
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 877 788999999999999999976555 8888888777666666655566679999999999999999999988875
Q ss_pred cc
Q 005254 186 KH 187 (706)
Q Consensus 186 ~~ 187 (706)
..
T Consensus 386 f~ 387 (425)
T KOG2695|consen 386 FP 387 (425)
T ss_pred CC
Confidence 43
No 316
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.83 E-value=1.5e-08 Score=60.53 Aligned_cols=39 Identities=28% Similarity=0.679 Sum_probs=37.2
Q ss_pred CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 610 GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 610 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
|+++..+++|.+.|++|+|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 478899999999999999999999999999999999997
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.7e-07 Score=80.54 Aligned_cols=260 Identities=12% Similarity=0.097 Sum_probs=160.3
Q ss_pred EEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEE
Q 005254 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457 (706)
Q Consensus 378 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 457 (706)
++..+..+.+....+..+...|..++ ++|..+-++..++.+..|.+.|+++...+..+..+ ..+.+++|.-+..+++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~Irdla--fSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLA--FSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhc--cCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence 67777777777778888899999998 88888877899999999999999999999888877 8999999999999999
Q ss_pred EEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEE------EEcCCCCEEEEeeCCCcEEEEeCCC--ccEE
Q 005254 458 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL------AVAPNDSLVCTGSQDRTACVWRLPD--LVSV 529 (706)
Q Consensus 458 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~s~~~~~l~~~~~dg~i~i~d~~~--~~~~ 529 (706)
.+|..+|.|.+||++..+........ .-...+|..+ ...+.|.+|+....+ +..|++.- +...
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a-------~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVA-------NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLP 322 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhh-------hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCC
Confidence 99999999999999876432211111 0011122222 334455566665544 45555432 2222
Q ss_pred EEEee-cCCcEEEEEEccCCCEEEEecCC-C------cEEE-EEcCCCceEEEEe-ec-cc------CEEEEEEEeCCCE
Q 005254 530 VTFRG-HKRGIWSVEFSPVDQVVITASGD-K------TIKI-WSISDGSCLKTFE-GH-TS------SVLRASFLTRGAQ 592 (706)
Q Consensus 530 ~~~~~-~~~~v~~~~~s~~~~~l~~~~~d-g------~i~i-wd~~~~~~~~~~~-~~-~~------~i~~~~~s~~~~~ 592 (706)
..++- ..+...+++..+..+.++..... . .|-. -|-.+|..+..-+ ++ .+ .-..+.-.++.++
T Consensus 323 ~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~ 402 (463)
T KOG1645|consen 323 CVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNY 402 (463)
T ss_pred cccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccE
Confidence 21221 24455666666644444433221 0 0111 1112232221111 11 00 0111222345566
Q ss_pred EEE-EeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcC-C-CCEEEEEeCCCcEEEEECCc
Q 005254 593 IVS-CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-K-TEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 593 l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~-~~~l~~~~~dg~i~vw~~~~ 651 (706)
++. ++..+.+.+||+.+.+.++.+.. ..+|..+.... + +.+|++-. |..+.||+.+.
T Consensus 403 iv~~gd~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 403 IVVVGDSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred EEEecCCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 544 44557899999999999998865 37787776533 2 33666544 66789988654
No 318
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=8.2e-07 Score=86.89 Aligned_cols=107 Identities=19% Similarity=0.214 Sum_probs=88.8
Q ss_pred ceEEcCCCCEEEEee-----CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 24 PLVVSSDGSFIACAC-----GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~-----~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
-..|+|...++|+++ ++.+.||- .+|++.+... -+-.+++++|+|..-.||.|-.-|.+.+|...+.+.-...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~ 97 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV 97 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence 356888888888875 34788885 6777654433 2234577999999999999999999999999888877777
Q ss_pred eccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 99 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
..|..+|..+.||++|..|+++..-|.+.+|..+
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 8899999999999999999999999999999886
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.82 E-value=1.3e-07 Score=93.17 Aligned_cols=179 Identities=21% Similarity=0.282 Sum_probs=136.4
Q ss_pred EEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECC
Q 005254 33 FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112 (706)
Q Consensus 33 ~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 112 (706)
++..+-.+.+..+|+.+.+..+...-....|+-+. .+++++.+|...|+|.+-|..+.+.++++..|++.|..+..
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv-- 225 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV-- 225 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--
Confidence 33334445799999999887776655444555444 45899999999999999999999999999999999986655
Q ss_pred CCCEEEEecC---------CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC---CCC-e
Q 005254 113 SGGLLATAGA---------DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL---LAK-K 179 (706)
Q Consensus 113 ~~~~l~~~~~---------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~---~~~-~ 179 (706)
.|++|+++|. |..|+|||++..+.+.-+.-+.++ .-+.|+|.-. ..++..+..|...+-|. .+. .
T Consensus 226 ~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~-t~~~V~S~sGq~q~vd~~~lsNP~~ 303 (1118)
T KOG1275|consen 226 QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT-TRLAVTSQSGQFQFVDTATLSNPPA 303 (1118)
T ss_pred cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc-ceEEEEecccceeeccccccCCCcc
Confidence 5888999873 677999999988877666655444 6678888632 34788888999999883 222 1
Q ss_pred eEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 180 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 180 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
.+..+......+..+++++++..++.+..+|.|.+|.-
T Consensus 304 ~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 304 GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 22233334456999999999999999999999999983
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.7e-08 Score=88.59 Aligned_cols=212 Identities=17% Similarity=0.098 Sum_probs=149.9
Q ss_pred CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CCcE
Q 005254 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRTA 518 (706)
Q Consensus 440 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i 518 (706)
|...|+.+..+.. .++.+++.||.++.|.-.... -......+..|-..|.+++.+-++.++.+.+. |..+
T Consensus 8 hrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~is-------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 8 HRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRIS-------GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSV 78 (558)
T ss_pred ccceeeeEeeehh--heEEeeecchhhhhcCCCCcc-------ceeehhhhHHHHHHHHhhhccccceeEeeccCcccce
Confidence 5666777666554 389999999999999754321 11133445667888999999999999999777 9999
Q ss_pred EEEeCCCccEEEEEee--cCCcEEEEEEccCC---CEEEEecCCCcEEEEEcCCCc--eEEEEeecccCEEEEEEEeCCC
Q 005254 519 CVWRLPDLVSVVTFRG--HKRGIWSVEFSPVD---QVVITASGDKTIKIWSISDGS--CLKTFEGHTSSVLRASFLTRGA 591 (706)
Q Consensus 519 ~i~d~~~~~~~~~~~~--~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~ 591 (706)
+++|+.+...+.-++. -.+.+. ...++.. ..-++...++.+.++|-.... ....-.-|..+|..+.+.+-+.
T Consensus 79 KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 79 KVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred eEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence 9999987655433332 112221 1122211 223334568899999965443 2333334899999999999999
Q ss_pred EEEEEeCCCCEEEEECCC------CeEEEE---------eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHH
Q 005254 592 QIVSCGADGLVKLWTVRT------GECIAT---------YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 592 ~l~~~~~dg~i~iwd~~~------~~~~~~---------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
..++....|.|.-|.... .+.... +........++.|+|++..+.+-+.|..|+++.+.+++..+
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 999999999999998762 111111 12234567899999999999999999999999999999877
Q ss_pred HHHHH
Q 005254 657 EAFRK 661 (706)
Q Consensus 657 ~~~~~ 661 (706)
+...-
T Consensus 238 eiDE~ 242 (558)
T KOG0882|consen 238 EIDEV 242 (558)
T ss_pred hhhcc
Confidence 66543
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.2e-06 Score=78.12 Aligned_cols=94 Identities=16% Similarity=0.270 Sum_probs=81.1
Q ss_pred EEEEECCCCeEEEEeeccCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEE
Q 005254 84 IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLF 162 (706)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 162 (706)
++..+..+.+...-+.+|...|..++|||..+ ++..++.+..|.|.|+++...+..+..+ ..+++++|.-+. .++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-RHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-cceeE
Confidence 66666666666667778889999999999877 7888899999999999999999888877 889999999885 67899
Q ss_pred EEecCCeEEEEECCCCe
Q 005254 163 SGSDDATVRVWDLLAKK 179 (706)
Q Consensus 163 ~~~~dg~i~vwd~~~~~ 179 (706)
.|..+|.|.+||++..+
T Consensus 253 aGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EeccCceEEEEEccCCC
Confidence 99999999999997654
No 322
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.76 E-value=2e-07 Score=77.66 Aligned_cols=201 Identities=13% Similarity=0.083 Sum_probs=115.7
Q ss_pred ceEEEEecCCCeEEEEECCCCeEEeeccCccc--cccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccce
Q 005254 264 EIHFITVGERGIVRMWNADSACLYEQKSSDVT--ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 341 (706)
Q Consensus 264 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 341 (706)
+..++++..++.+.......+.....-..+.. .......+.+.-..-..+-.+..++++..||.+.+++.........
T Consensus 47 ~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~ 126 (319)
T KOG4714|consen 47 EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMS 126 (319)
T ss_pred hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhh
Confidence 34566666666666655544422211111111 0011112223333334455667788899999998887765221111
Q ss_pred eeEEeeEecccCceeeEeeEeCCCCcEEEEE-----ecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEE
Q 005254 342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVA-----TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT 416 (706)
Q Consensus 342 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 416 (706)
. .........+.++.. .++.+.++ -.-+..+.|++...+....-......+.++. ..|..+.++++
T Consensus 127 ~------i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~--~hp~qq~~v~c 197 (319)
T KOG4714|consen 127 R------IPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALC--SHPAQQHLVCC 197 (319)
T ss_pred h------cccccccccccceee-cccEEecCCcceEeeccceeeecccccccccccccccccchhhh--CCcccccEEEE
Confidence 1 111111111122221 11222211 1124455666655443332222333466666 78888888999
Q ss_pred eeCCCcEEEEeCCCceEE-EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 417 GSKDNSVRLWDSESRCCV-GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
|+.||.+.+||.++.... ..+..|..++..+-|+|..+..|++++.||.+..||...
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999887433 346789999999999999888999999999999998653
No 323
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.75 E-value=3.9e-05 Score=76.85 Aligned_cols=231 Identities=12% Similarity=0.140 Sum_probs=131.1
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcce-----EEEeeeeeecCCCEEEEEee---------CCCcEEEEeCCCce
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI-----VLCLDTCALSSGKILIVTGS---------KDNSVRLWDSESRC 432 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~ 432 (706)
..+++++.++.++.+|.++++.+......... +.+- ..-.+.. ++.++ .+|.+..+|..+++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ss---P~v~~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGA---PTIVKKL-VIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCC---CEEECCE-EEEeccccccccCCCCcEEEEEECCCCc
Confidence 34555555666777777766666554432210 1110 0111233 33443 46789999999998
Q ss_pred EEEEEeCCCcC--------------------e-EEEEEecCCCeEEEEecCCC------------------eEEEEEecC
Q 005254 433 CVGVGTGHMGA--------------------V-GAVAFSKKLQNFLVSGSSDH------------------TIKVWSFDG 473 (706)
Q Consensus 433 ~~~~~~~~~~~--------------------v-~~~~~~~~~~~~l~~~~~d~------------------~i~i~~~~~ 473 (706)
.+-........ + ...++.+.+. .++.++.++ .+.-+|..+
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 88776542110 1 1233443333 566666554 577777766
Q ss_pred CCCCCCcccccceeEEEee--c--------Ccc-eEEEEEcCCCC---EEEEeeCCCcEEEEeCCCccEEEEEeecCCcE
Q 005254 474 LSDDAEQPMNLKAKAVVAA--H--------GKD-INSLAVAPNDS---LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI 539 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~--~--------~~~-i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 539 (706)
++ ....... + ..+ +..+. .-++. .+++++.+|.+..+|..+++.+.......
T Consensus 266 G~----------~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--- 331 (488)
T cd00216 266 GK----------VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--- 331 (488)
T ss_pred CC----------EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---
Confidence 54 1111110 1 000 01110 11333 67788899999999999999887765321
Q ss_pred EEEEEccCCCEEEEe------------------cCCCcEEEEEcCCCceEEEEeecc--------cCEEEEEEEeCCCEE
Q 005254 540 WSVEFSPVDQVVITA------------------SGDKTIKIWSISDGSCLKTFEGHT--------SSVLRASFLTRGAQI 593 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~--------~~i~~~~~s~~~~~l 593 (706)
..++.+| ..++.+ ..+|.+.-.|+.+|+.+-+..... .+...-.....+..|
T Consensus 332 ~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v 409 (488)
T cd00216 332 QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLV 409 (488)
T ss_pred cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeE
Confidence 1233344 223322 246788889999998876665321 111111122356789
Q ss_pred EEEeCCCCEEEEECCCCeEEEEecc
Q 005254 594 VSCGADGLVKLWTVRTGECIATYDK 618 (706)
Q Consensus 594 ~~~~~dg~i~iwd~~~~~~~~~~~~ 618 (706)
+.++.||.|+.+|..+|+.+...+.
T Consensus 410 ~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 410 FAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred EEECCCCeEEEEECCCCceeeEEEC
Confidence 9999999999999999999988764
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.74 E-value=9.8e-06 Score=78.21 Aligned_cols=291 Identities=16% Similarity=0.195 Sum_probs=167.5
Q ss_pred cccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC
Q 005254 350 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 429 (706)
Q Consensus 350 ~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 429 (706)
.+.......+......+++++.|+..|.+++|+-..+.....-.+....+.+.. ..+....++|.|+..|.|.++-+.
T Consensus 29 ~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~--~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 29 PGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVR--SVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred cccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEE--EecchhHhhhhhcCCceEEeehhh
Confidence 344445555555666889999999999999999888766544443333344333 344455559999999999999876
Q ss_pred CceEEE---E---EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 430 SRCCVG---V---GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 430 ~~~~~~---~---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
.+..-. . -..|...|++++|++++. .+++|...|+|..-.++... ........+......|..+...
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~------~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQ------AFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhh------hhccccceeeccCcceEEeecc
Confidence 642211 1 123688999999999998 89999999999998887510 0111222333345566666665
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCcc--EEEEEeecCC-cEEEEEEccC----CCEEEEecCCCcEEEEEcC-CCceEEEEe
Q 005254 504 PNDSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKR-GIWSVEFSPV----DQVVITASGDKTIKIWSIS-DGSCLKTFE 575 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~-~v~~~~~s~~----~~~l~~~~~dg~i~iwd~~-~~~~~~~~~ 575 (706)
++.+|++... . -.+++.+... .+..-. ..+ .-...+|-|. .+-.+.++.-| .|+|..+ .|+.+++..
T Consensus 180 -q~~LLVStl~-r-~~Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thq 254 (726)
T KOG3621|consen 180 -QSYLLVSTLT-R-CILCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQ 254 (726)
T ss_pred -cceehHhhhh-h-hheeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeee
Confidence 3334443332 2 2334443222 111111 111 1223444442 23344444555 6788764 244444332
Q ss_pred e-------------ccc----------------CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEE
Q 005254 576 G-------------HTS----------------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL 626 (706)
Q Consensus 576 ~-------------~~~----------------~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 626 (706)
- +.. ....+.+-.+ .++++-++-| |+|+|..+.+.+.-..+ ...|..+
T Consensus 255 fk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~-~~vLa~te~G-iyv~d~~~~~v~l~se~-~~DI~dV 331 (726)
T KOG3621|consen 255 FKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHS-DRVLAWTEVG-IYVFDSNNSQVYLWSEG-GHDILDV 331 (726)
T ss_pred hhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeec-ceEEEeecce-EEEEEeccceEEEeecC-CCceeEE
Confidence 0 000 0111112222 2455555555 99999888776655433 3345555
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCchhHHHHHH
Q 005254 627 AVGKKTEMFATGGSDALVNLWHDSTAAEREEAF 659 (706)
Q Consensus 627 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 659 (706)
+. +++-|+.--.||.+++..+.+........
T Consensus 332 s~--~~neiFvL~~d~~l~~~sv~s~qr~l~~l 362 (726)
T KOG3621|consen 332 SH--CGNEIFVLNLDRGLKVESVASRQRKLESL 362 (726)
T ss_pred ee--cCceEEEEecCCceeEEEeehhHHHHHHH
Confidence 54 56667777778888888888776655444
No 325
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.74 E-value=6.6e-05 Score=75.24 Aligned_cols=194 Identities=14% Similarity=0.163 Sum_probs=113.3
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCCc------cEE--EEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeecc
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGSD------TIT--ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~------~i~--~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 101 (706)
++.+++...++.++-+|..+|+.+-..+.... .+. .+++. ++..++.++.++.|.-+|.++|+.+.++...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 55555544456899999999988755543221 110 11111 2267778888999999999999999887643
Q ss_pred CCC--eEEEEECC--CCCEEEEec---------CCCcEEEEECCCCeEEEEeeCCCCc--------------------E-
Q 005254 102 DGP--AIGMACHP--SGGLLATAG---------ADRKVLVWDVDGGFCTHYFKGHKGV--------------------V- 147 (706)
Q Consensus 102 ~~~--v~~~~~s~--~~~~l~~~~---------~d~~i~vw~~~~~~~~~~~~~~~~~--------------------v- 147 (706)
... -..+.-+| .+..+++++ .++.+...|.++|+.+..+...... +
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 321 01111122 124455553 3678999999999988776542110 1
Q ss_pred EEEEEcCCCCceEEEEEecCC------------------eEEEEECCCCeeEEEeecccceEE------EEEEe----cC
Q 005254 148 SSILFHPDTDKSLLFSGSDDA------------------TVRVWDLLAKKCVATLDKHFSRVT------SMAIT----SD 199 (706)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~dg------------------~i~vwd~~~~~~~~~~~~~~~~v~------~~~~~----~~ 199 (706)
...++.+.+.. ++.++.++ .|.-.|..+|+.+...+.-..... ...+. -+
T Consensus 220 ~~pa~d~~~g~--V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 220 ASPTYDPKTNL--VYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred CCeeEeCCCCE--EEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 11233333333 66666554 788999999998877642111110 00111 12
Q ss_pred CC---EEEEEeCCCEEEEEeCCCCcceeee
Q 005254 200 GS---TLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 200 ~~---~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
+. .++.++.+|.+...|.++++.+...
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 32 4666777888888888877766543
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.73 E-value=3.1e-07 Score=90.58 Aligned_cols=178 Identities=13% Similarity=0.206 Sum_probs=133.3
Q ss_pred EEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeec
Q 005254 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH 535 (706)
Q Consensus 456 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 535 (706)
.++.|+--..+..+|++..+ ......-....++- +..+++++.+|...|+|.+-|.++.+.+.++..|
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~----------e~r~~~v~a~~v~i--mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH 216 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEK----------ETRTTNVSASGVTI--MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAH 216 (1118)
T ss_pred ceeecchhhheeeeecccce----------eeeeeeccCCceEE--EEecCcEEEeecccceEEeecCCcCceeeeeecc
Confidence 56677766778888887653 11111112222333 3457889999999999999999999999999999
Q ss_pred CCcEEEEEEccCCCEEEEecC---------CCcEEEEEcCCCceEEEEeecccCEEEEEEEeC-CCEEEEEeCCCCEEEE
Q 005254 536 KRGIWSVEFSPVDQVVITASG---------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR-GAQIVSCGADGLVKLW 605 (706)
Q Consensus 536 ~~~v~~~~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw 605 (706)
.+.|.++.. .|+.|++++. |..|+|||++..+.+.-+..+.++ .-+.|.|. -..+++++..|...+-
T Consensus 217 s~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 217 SGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred ccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence 999976655 5899999876 556899999988877766655554 45677774 3478888899999999
Q ss_pred E---CCCC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 606 T---VRTG-ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 606 d---~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
| +.+. .-+..+..-...+.++.+|+++..|+.+..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8 3333 22333444456699999999999999999999999998
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.72 E-value=4.6e-05 Score=72.98 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=50.7
Q ss_pred ccCCCEEEEE---------eccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Q 005254 69 SPDDKLLFSS---------GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT 137 (706)
Q Consensus 69 s~~~~~l~s~---------~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~ 137 (706)
|||+++++.. +..+.+.|+|+++++....... ...+....|||+|+++|... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 6889888774 2356899999999876655443 67888999999999999986 578999998777433
No 328
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.67 E-value=0.0007 Score=68.75 Aligned_cols=433 Identities=12% Similarity=0.105 Sum_probs=217.0
Q ss_pred CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe-eccCCCeEEEEECCC--C-
Q 005254 39 GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHPS--G- 114 (706)
Q Consensus 39 ~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~--~- 114 (706)
.+.|++++-. ..+.... ....++.-+.+.+...++.++.++.+...++..+.+...- +.-...|.|+.++|- +
T Consensus 469 s~~iRl~ss~--~~~~~W~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~ 545 (1096)
T KOG1897|consen 469 SNSIRLVSSA--GLRSEWR-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAP 545 (1096)
T ss_pred cccEEEEcch--hhhhccc-CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCC
Confidence 3446666643 2223333 2455666666777767777777777877787766622221 123578999999984 2
Q ss_pred ---CEEEEecCCCcEEEE-ECCCCeEEEEee-C---CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC--CCeeEEEe
Q 005254 115 ---GLLATAGADRKVLVW-DVDGGFCTHYFK-G---HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL--AKKCVATL 184 (706)
Q Consensus 115 ---~~l~~~~~d~~i~vw-~~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~ 184 (706)
+++|+|..+..+.+- -..+...+.... + -...|.-.+|-.| ..+|.++..||.+.-+-+. ++..-..-
T Consensus 546 ~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d--~~yLlvalgdG~l~~fv~d~~tg~lsd~K 623 (1096)
T KOG1897|consen 546 NKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD--IHYLLVALGDGALLYFVLDINTGQLSDRK 623 (1096)
T ss_pred CcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc--ceEEEEEcCCceEEEEEEEcccceEcccc
Confidence 267777655544333 333333333221 1 1223444444433 5569999999998877554 44322111
Q ss_pred --ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccc
Q 005254 185 --DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS 262 (706)
Q Consensus 185 --~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (706)
.-...++.--.|+..++.-+.+..|.-..+|..+..-....+...+ +..++...+...
T Consensus 624 k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~ke-v~~~c~f~s~a~------------------- 683 (1096)
T KOG1897|consen 624 KVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKE-VNHMCPFNSDAY------------------- 683 (1096)
T ss_pred ccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHH-hhhhcccccccC-------------------
Confidence 1123466666777766655555566666666544322222222111 111221111110
Q ss_pred cceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCC-----------ceEEE
Q 005254 263 LEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQ-----------QLLLY 331 (706)
Q Consensus 263 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~ 331 (706)
...+.....+.+++..++.-.-..... -.-......+++.+....+.+.+... .+...
T Consensus 684 --~d~l~~~~~~~l~i~tid~iqkl~irt---------vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l 752 (1096)
T KOG1897|consen 684 --PDSLASANGGALTIGTIDEIQKLHIRT---------VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFL 752 (1096)
T ss_pred --CceEEEecCCceEEEEecchhhcceee---------ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEE
Confidence 012333334445554443321000000 00011122222222111111111111 11111
Q ss_pred EeeeccccceeeEEeeEec--ccCceeeEeeEeCCCCcEEEEEec----------CCcEEEEeCCCceeeEeeeCC--cc
Q 005254 332 TTVEVPEKKMELILSKRLV--GYNEEILDLKFLGEEEQYLAVATN----------IEQVQVYDLSSMSCSYVLAGH--SE 397 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~----------~~~i~~~d~~~~~~~~~~~~~--~~ 397 (706)
..-+. ...+......+. .....+.++.|..+.+.++++|+. .|.|.++.......+.....+ .+
T Consensus 753 ~vlD~--nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 753 RVLDQ--NTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEecC--CceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 11000 000111111111 112234455577766788888764 467777777664433333332 22
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCC
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 477 (706)
.+.++. .-++ . +.++-...|++|++.+++.++.-..+..++..+...-.+. .+++|.--+++.+......+..
T Consensus 831 av~aL~---~fng-k--llA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~ 903 (1096)
T KOG1897|consen 831 AVYALV---EFNG-K--LLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGN 903 (1096)
T ss_pred ceeehh---hhCC-e--EEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCc
Confidence 333331 1223 3 2334567899999999988888888889999998888876 7888988888888777654311
Q ss_pred CCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
. ......-+...++++.+-.+.. .+.+..+|.+.+....
T Consensus 904 f-------~evArD~~p~Wmtaveil~~d~-ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 904 F-------EEVARDYNPNWMTAVEILDDDT-YLGAENSGNLFTVRKD 942 (1096)
T ss_pred e-------EEeehhhCccceeeEEEecCce-EEeecccccEEEEEec
Confidence 1 1112233556677777765544 4445567777776543
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.67 E-value=2.7e-05 Score=76.13 Aligned_cols=193 Identities=16% Similarity=0.134 Sum_probs=127.1
Q ss_pred eeeeecc--ceEEcCCCCEEEEeeCC--eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc----CeEEEEE
Q 005254 17 QQFYGGG--PLVVSSDGSFIACACGE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS----REIRVWD 88 (706)
Q Consensus 17 ~~~~~~~--~~~~s~dg~~l~~~~~~--~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d----~~i~iwd 88 (706)
..++.++ .+=++|||+.+...+.- .+.+.|..+.+....+.-.. .-..++++|+|+++++.+.+ .++..-+
T Consensus 188 ~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~ 266 (635)
T PRK02888 188 GYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMM 266 (635)
T ss_pred cEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeec
Confidence 3344444 66788999887655432 58888999988776665433 44778999999999887532 2233332
Q ss_pred CCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC----C-eEEEEeeCCCCcEEEEEEcCCCCceEEEE
Q 005254 89 LSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG----G-FCTHYFKGHKGVVSSILFHPDTDKSLLFS 163 (706)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~----~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 163 (706)
..+...+..+.... + -++.++|++...+ ++.|.+.|..+ + +.+..+. -......+.++|||++ ++++
T Consensus 267 a~e~d~~vvfni~~--i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGky-lyVa 338 (635)
T PRK02888 267 AAERDWVVVFNIAR--I--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKY-FIAN 338 (635)
T ss_pred cccCceEEEEchHH--H--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCE-EEEe
Confidence 22222221111100 0 1334578877763 57899999988 3 4444444 5667789999999876 5556
Q ss_pred EecCCeEEEEECCCCee------------EEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 164 GSDDATVRVWDLLAKKC------------VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 164 ~~~dg~i~vwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
+..+.+|.|.|+.+.+. .....--. .....+|.++|....+.--|..|..|++..
T Consensus 339 nklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 339 GKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 66799999999987553 33333222 334568999998888888899999999876
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.64 E-value=4.3e-06 Score=80.56 Aligned_cols=195 Identities=14% Similarity=0.141 Sum_probs=121.1
Q ss_pred EEcCCCCEEEEeeCC-eEEEEEccCCeEEE-eecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeE-----EEEe
Q 005254 26 VVSSDGSFIACACGE-SINIVDLSNASIKS-TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC-----LRSW 98 (706)
Q Consensus 26 ~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~-~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~ 98 (706)
+++..+++++.|... .+++|+-.+++.+. ...+....+..+.+|++..++|.|+..|.|.++-+..+.+ +...
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 466788999998875 89999977776543 3334556777888999999999999999999998876421 1222
Q ss_pred -eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC----eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEE
Q 005254 99 -KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG----FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173 (706)
Q Consensus 99 -~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 173 (706)
+.|...|++++|++|+..+.+|...|.|..-.+++. -..+.+..-.++|..+.... ..+|++.... -.+.
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q---~~LLVStl~r--~~Lc 194 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ---SYLLVSTLTR--CILC 194 (726)
T ss_pred cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc---ceehHhhhhh--hhee
Confidence 237889999999999999999999999999888872 11122333556777776653 3334443332 2344
Q ss_pred ECCCCeeEEEeecccce--EEEEEEecC----CCEEEEEeCCCEEEEEeCCC-Ccceeee
Q 005254 174 DLLAKKCVATLDKHFSR--VTSMAITSD----GSTLISAGRDKVVNLWDLRD-YSCKLTV 226 (706)
Q Consensus 174 d~~~~~~~~~~~~~~~~--v~~~~~~~~----~~~l~~~~~dg~i~~w~~~~-~~~~~~~ 226 (706)
+.+.++..+.-+..... -...+|-|. .+-.+.++.-| .++|..+- |+..++.
T Consensus 195 ~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Th 253 (726)
T KOG3621|consen 195 QTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTH 253 (726)
T ss_pred ecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEee
Confidence 44433321111111111 233445443 23344444555 78887653 3333333
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=7.7e-06 Score=80.71 Aligned_cols=202 Identities=16% Similarity=0.282 Sum_probs=141.0
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCcc-EEEEEEccCCCEEEEEeccC-----eEEEEECCCC---
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDT-ITALALSPDDKLLFSSGHSR-----EIRVWDLSTL--- 92 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~-i~~l~~s~~~~~l~s~~~d~-----~i~iwd~~~~--- 92 (706)
..-++++.+..++.|... .|.+++ .+-+.++.++.+... |+.+-...+..+|++.+.|+ .|+|||++..
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 455688889899988875 777776 344555778877777 55555555557888876654 5999999632
Q ss_pred ---eEE--EEeec-----cCCCeEEEEECCCCCEEEEecCCCcEEEEEC----CCCeEEEEeeCCCCcEEEEEEcCCCCc
Q 005254 93 ---KCL--RSWKG-----HDGPAIGMACHPSGGLLATAGADRKVLVWDV----DGGFCTHYFKGHKGVVSSILFHPDTDK 158 (706)
Q Consensus 93 ---~~~--~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~ 158 (706)
.++ +.+.+ ...++.+++.+.+-+.+|+|-.+|.|..+.= +.|...........+|+.+++..++..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 333 12222 3568899999999999999999999988853 223333333446789999999988776
Q ss_pred eEEEEEecCCeEEEEECCCCe-eEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 159 SLLFSGSDDATVRVWDLLAKK-CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 159 ~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
. ++++.. ..|.+|.+.... ....+..|...+.|-.+++....+++++ +..+.+|+.+.......++.
T Consensus 186 ~-lFv~Tt-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~ 253 (933)
T KOG2114|consen 186 V-LFVATT-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEV 253 (933)
T ss_pred e-EEEEec-ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecC
Confidence 3 333333 459999987444 2445777888999999987766566665 45699999987766666653
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.4e-06 Score=85.00 Aligned_cols=181 Identities=15% Similarity=0.169 Sum_probs=130.4
Q ss_pred cCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEE
Q 005254 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 521 (706)
..+++++++.. +++-|+.+|.+++++.+.. . .....|... ..+|.++++|+.||+|.|.
T Consensus 40 D~is~~av~~~---~~~~GtH~g~v~~~~~~~~-----------~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~ 98 (846)
T KOG2066|consen 40 DAISCCAVHDK---FFALGTHRGAVYLTTCQGN-----------P-KTNFDHSSS------ILEGEYVASCSDDGKVVIG 98 (846)
T ss_pred hHHHHHHhhcc---eeeeccccceEEEEecCCc-----------c-ccccccccc------ccCCceEEEecCCCcEEEe
Confidence 45556666654 8999999999999998754 1 111222221 5689999999999999999
Q ss_pred eCCCccEEEEEeecCCcEEEEEEccC-----CCEEEEecCCCcEEEEEcCCC-ce-EEEEeecccCEEEEEEEeCCCEEE
Q 005254 522 RLPDLVSVVTFRGHKRGIWSVEFSPV-----DQVVITASGDKTIKIWSISDG-SC-LKTFEGHTSSVLRASFLTRGAQIV 594 (706)
Q Consensus 522 d~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~iwd~~~~-~~-~~~~~~~~~~i~~~~~s~~~~~l~ 594 (706)
.+-+.+...++. ...++.+++++|+ .+.+++|+.-| +.++.-+-. .. -..+....++|.++.| .|+++|
T Consensus 99 sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIA 174 (846)
T KOG2066|consen 99 SLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIA 174 (846)
T ss_pred eccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEE
Confidence 998888777666 5678999999998 56899999988 777763211 11 1134445678998888 467888
Q ss_pred EEeCCCCEEEEECCCCeEEEEeccCCCcE------EEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 595 SCGADGLVKLWTVRTGECIATYDKHEDKI------WALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 595 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v------~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
-++.+| |+|||+.+++.+..++.....+ ..+.|.++.++++ |...+|+|..+.
T Consensus 175 Wand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 175 WANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIK 233 (846)
T ss_pred EecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEe
Confidence 888777 9999999999888887443333 3577876665443 344568888887
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.61 E-value=0.00032 Score=66.94 Aligned_cols=271 Identities=13% Similarity=0.112 Sum_probs=133.2
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC------
Q 005254 104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA------ 177 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------ 177 (706)
.|+.+.|+++..-|+++...|.|.+|.+...+... .....+-..+.|.+-+ ..++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~l~di~~r~~~~~ 72 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS--------LNNSPGKLTDISDRAPPSL 72 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S----------GGGSS-SEEE-GGG--TT-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc--------ccCCCcceEEehhhCCccc
Confidence 58899999999999999999999999987654322 0011111122221110 0011112222221
Q ss_pred ---CeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcc---------eeeeEEeeCCCCCcc
Q 005254 178 ---KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE---------MVEAVCAIPPGSAFD 245 (706)
Q Consensus 178 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 245 (706)
..+...++...++|++++.|.-| ++++|.++|.+.+.|++....+......+ .+..+.|
T Consensus 73 ~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF-------- 143 (395)
T PF08596_consen 73 KEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEF-------- 143 (395)
T ss_dssp SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEE--------
T ss_pred ccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEE--------
Confidence 12333445567999999998554 99999999999999998887766643333 0001110
Q ss_pred cccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeC
Q 005254 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (706)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (706)
.+.+.+.|+.- .-.+++++..
T Consensus 144 --------------------~vm~~~~D~yS---------------------------------------Si~L~vGTn~ 164 (395)
T PF08596_consen 144 --------------------SVMTLGGDGYS---------------------------------------SICLLVGTNS 164 (395)
T ss_dssp --------------------EEEE-TTSSSE---------------------------------------EEEEEEEETT
T ss_pred --------------------EEEecCCCccc---------------------------------------ceEEEEEeCC
Confidence 01111111110 0235667777
Q ss_pred CceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCC--------------------CcEEEEEecCCcEEEEeCCC
Q 005254 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE--------------------EQYLAVATNIEQVQVYDLSS 385 (706)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~~l~~~~~~~~i~~~d~~~ 385 (706)
|.+..|.+..................+.+++..+.....+ ..-+++...+..++++...+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 7777777765444444444444444455555555543211 12345555568999999988
Q ss_pred ceeeEeeeCCcceEEEeeeeee----cCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCC----cCeEEEEEecCCC
Q 005254 386 MSCSYVLAGHSEIVLCLDTCAL----SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM----GAVGAVAFSKKLQ 454 (706)
Q Consensus 386 ~~~~~~~~~~~~~i~~~~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~v~~~~~~~~~~ 454 (706)
.+...... ..+..+-..++. ......|++-..+|.++++.+..-+.+....... ..+....++++|+
T Consensus 245 ~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 245 SKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp --EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred Ccccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence 77665554 222332222232 2344558888899999999999988887766432 2344566777777
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.58 E-value=7.8e-05 Score=77.01 Aligned_cols=243 Identities=12% Similarity=0.107 Sum_probs=137.4
Q ss_pred cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 352 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
....|.++.|.. +...++++...|.|.+.|.++.... ....-...|.++. ++|+.+. ++..+..+++.+... +.
T Consensus 67 gd~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aas--wS~Dee~-l~liT~~~tll~mT~-~f 140 (1265)
T KOG1920|consen 67 GDDEIVSVQFLA-DTNSICVITALGDIILVDPETLELE-IVGNVDNGISAAS--WSPDEEL-LALITGRQTLLFMTK-DF 140 (1265)
T ss_pred CCcceEEEEEec-ccceEEEEecCCcEEEEccccccee-eeeeccCceEEEe--ecCCCcE-EEEEeCCcEEEEEec-cc
Confidence 346888999987 4556666777788888887776543 3334455677776 8888887 666666666655432 22
Q ss_pred eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcc-cccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP-MNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
.++...+.+ ..-.+.+ -.+.++....=.-+.-..+.....++ ...+..... .....=+++.|--||+++|
T Consensus 141 ~~i~E~~L~------~d~~~~s--k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgDg~~fA 211 (1265)
T KOG1920|consen 141 EPIAEKPLD------ADDERKS--KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI-EQDDHKTSISWRGDGEYFA 211 (1265)
T ss_pred cchhccccc------ccccccc--ccceecccccceeeecchhhhcccccccccccccch-hhccCCceEEEccCCcEEE
Confidence 222111110 0001111 13333333222222211111000000 000000000 1222336789999999999
Q ss_pred Ee-----eCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec---CCCcEEEEEcCCCceEEE----Eeecc
Q 005254 511 TG-----SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISDGSCLKT----FEGHT 578 (706)
Q Consensus 511 ~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~----~~~~~ 578 (706)
+. ...+.|++||-+ +.+-..-....+.-.+++|-|.|..+++-. .|+.|.++.- +|-.... +....
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccc
Confidence 83 223789999976 443333333334446799999999998753 4567999984 4433332 22233
Q ss_pred cCEEEEEEEeCCCEEEE---EeCCCCEEEEECCCCe
Q 005254 579 SSVLRASFLTRGAQIVS---CGADGLVKLWTVRTGE 611 (706)
Q Consensus 579 ~~i~~~~~s~~~~~l~~---~~~dg~i~iwd~~~~~ 611 (706)
.++..++|+.++..|++ ......|++|-+.+..
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 45899999999999988 4444569999887654
No 335
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=3.4e-08 Score=96.70 Aligned_cols=201 Identities=15% Similarity=0.268 Sum_probs=147.2
Q ss_pred eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC-eEE
Q 005254 389 SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIK 467 (706)
Q Consensus 389 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~ 467 (706)
...+..+....+|++ |+...+. ++.|+-.|.|++++..+|........|.+.++.+.-+.+|...|.+.+... -..
T Consensus 1094 w~~frd~~~~fTc~a--fs~~~~h-L~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIA--FSGGTNH-LAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred chhhhccccceeeEE--eecCCce-EEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 345667777888887 7777777 999999999999999999999999999999999999999986565555554 567
Q ss_pred EEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEE-ee---cCCcEEEEE
Q 005254 468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF-RG---HKRGIWSVE 543 (706)
Q Consensus 468 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~---~~~~v~~~~ 543 (706)
+|++..... ....+ ..-.++.|+.....-+.|+......+||+.++.++.++ .+ .+..-.+..
T Consensus 1171 LW~~~s~~~---------~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1171 LWDASSTGG---------PRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred HhccccccC---------ccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 898865321 11212 12356788876656666776678999999998776652 22 223336788
Q ss_pred EccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEe
Q 005254 544 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY 616 (706)
Q Consensus 544 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 616 (706)
|+|+..+++ .|| .+||++..+.++.|.... .-..-.|+|.|..++.-+ .|||+++-+.+...
T Consensus 1238 FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1238 FSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred cCCCcceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHHhcC
Confidence 999988775 466 589999888887776433 222347999999888765 48999887665544
No 336
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.52 E-value=0.00026 Score=68.67 Aligned_cols=193 Identities=16% Similarity=0.090 Sum_probs=106.0
Q ss_pred eEEcCCCCEEEEeeCC------------eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC
Q 005254 25 LVVSSDGSFIACACGE------------SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL 92 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~------------~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~ 92 (706)
+|.+|.|..+|...+. .|.||+. .|+.+..+.-..+.|.++.|+.+.+ |+....||.++++|+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCc
Confidence 5666666666666555 5999995 5666665544448999999998755 456668999999998633
Q ss_pred e------EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe-EEEEee---CCCC------cEEE-EEEcCC
Q 005254 93 K------CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF-CTHYFK---GHKG------VVSS-ILFHPD 155 (706)
Q Consensus 93 ~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~---~~~~------~v~~-~~~~~~ 155 (706)
. .+....-....+.+..+..+| ++....++.+.+-+--... ....+. .... .... ..++.+
T Consensus 112 ~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~ 189 (410)
T PF04841_consen 112 FQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSD 189 (410)
T ss_pred eeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecC
Confidence 3 111111122333444555566 3333344554444322211 111111 1000 0000 122222
Q ss_pred CCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 156 TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 156 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
.. ..+....++.+.+.+-...+. +. ..+++..|++||+|++++.-..+|.+.+.+.+-.+....+.
T Consensus 190 ~~--~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 190 RV--VEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred cc--eEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 22 233334445555333222111 11 23689999999999999999999999888765554444433
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.50 E-value=7.8e-05 Score=72.05 Aligned_cols=173 Identities=13% Similarity=0.118 Sum_probs=98.6
Q ss_pred cceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 23 GPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
..+.++|+|+++++++++...||.....+....-. -...+|+++++ .|+-...+.|.|+.--+.+....++..
T Consensus 36 ~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~-----g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~- 108 (443)
T PF04053_consen 36 QSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGS-----GLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP- 108 (443)
T ss_dssp SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE------SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S-
T ss_pred eeEEECCCCCEEEEEcCCEEEEEEccCCcccccCc-----eeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC-
Confidence 36999999999999999999999865555444322 25678888655 566666888999643233332334322
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC----
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---- 178 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---- 178 (706)
..+..+-. |.+|+..+. +.|.+||+++++.+..+... +|..+.|+++++. ++..+.+ .+.+++....
T Consensus 109 ~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~--val~t~~-~i~il~~~~~~~~~ 179 (443)
T PF04053_consen 109 FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGEL--VALVTKD-SIYILKYNLEAVAA 179 (443)
T ss_dssp S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSE--EEEE-S--SEEEEEE-HHHHHH
T ss_pred cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCE--EEEEeCC-eEEEEEecchhccc
Confidence 23333333 887877765 47999999999999988743 3899999999875 5555554 5788765332
Q ss_pred -------eeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEE
Q 005254 179 -------KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 214 (706)
Q Consensus 179 -------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 214 (706)
..+..+..-...|.+.+|..+ .++-.+.. +++.
T Consensus 180 ~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 180 IPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp BTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred ccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 133333332567888899876 33333333 6666
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.49 E-value=0.00019 Score=63.06 Aligned_cols=190 Identities=15% Similarity=0.204 Sum_probs=116.3
Q ss_pred ccceEEcCCCCEEEEeeCC--eEEEEEccCCeEEEeecCC-CccEEEEEEccCCCEEEEEeccCeEEEEECCCCe-----
Q 005254 22 GGPLVVSSDGSFIACACGE--SINIVDLSNASIKSTIEGG-SDTITALALSPDDKLLFSSGHSREIRVWDLSTLK----- 93 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~--~i~i~d~~~~~~~~~l~~~-~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~----- 93 (706)
.+.|++.||.+.|++..+. .|..++. +|+.++.+.-. .+..-.|++..++.++++--.++.+.+.++....
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~ 102 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR 102 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch
Confidence 3579999998877777776 6888886 57777666433 3557899999888887776668999999883321
Q ss_pred -EEEEee-----ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC---CeEEEEe--------eCCCCcEEEEEEcCCC
Q 005254 94 -CLRSWK-----GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG---GFCTHYF--------KGHKGVVSSILFHPDT 156 (706)
Q Consensus 94 -~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~---~~~~~~~--------~~~~~~v~~~~~~~~~ 156 (706)
....+. .++..+-.++|+|.++.|+++-+..-..++.+.. ...+... ......+.+++++|..
T Consensus 103 ~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t 182 (248)
T PF06977_consen 103 ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRT 182 (248)
T ss_dssp EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTT
T ss_pred hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCC
Confidence 112221 2556799999999988888887776677777654 2222111 1244568999999985
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEEEeeccc---------ceEEEEEEecCCCEEEEEeCCCEEEEE
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHF---------SRVTSMAITSDGSTLISAGRDKVVNLW 215 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~~w 215 (706)
. .+++....+..|..+| .+|+.+..+.-.. ...-.++|.++|+ |+..++.+..+++
T Consensus 183 ~-~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 183 G-HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp T-EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred C-eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 5 4566677888899999 5777665543221 3578999999985 6666677766655
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.49 E-value=0.00044 Score=60.83 Aligned_cols=208 Identities=9% Similarity=0.154 Sum_probs=121.0
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC-CcCeEEEEEecCCCeEEEEecCCCeEEEE
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 469 (706)
.+.+-...+.+++ +.|+.+.++++....+.|..++.. |+.++.+... .+..-.+++..++. ++++.-.++.+.++
T Consensus 16 ~l~g~~~e~SGLT--y~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGILDELSGLT--YNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT--S-EEEEE--EETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTEEEEE
T ss_pred ECCCccCCccccE--EcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCcEEEE
Confidence 4556666788998 899999989999999999989974 7777776544 46788899988775 66666678999999
Q ss_pred EecCCCCCCCcccccceeE--EEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC---ccEEEEE--e------ecC
Q 005254 470 SFDGLSDDAEQPMNLKAKA--VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD---LVSVVTF--R------GHK 536 (706)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~--~------~~~ 536 (706)
++.......... ...... ....++..+..++++|.++.|+++-+..-..+|.+.. ...+... . ...
T Consensus 92 ~~~~~~~~~~~~-~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 92 TIDDDTTSLDRA-DVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp EE----TT--EE-EEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EEeccccccchh-hceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 996543221111 001111 1123556789999999888887777776667776653 2222111 1 123
Q ss_pred CcEEEEEEccC-CCEEEEecCCCcEEEEEcCCCceEEEEeecc---------cCEEEEEEEeCCCEEEEEeCCCCEEEE
Q 005254 537 RGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEGHT---------SSVLRASFLTRGAQIVSCGADGLVKLW 605 (706)
Q Consensus 537 ~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~iw 605 (706)
..+.+++++|. +.+++.+..+..|..+| .+|+.+..+.-.. ...-.++|.++|+..+ .++-+..++|
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 45788999985 45667777888899999 5787766554222 2467899999985544 4565655554
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=8.5e-06 Score=79.80 Aligned_cols=176 Identities=14% Similarity=0.218 Sum_probs=126.9
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
|.++ .+++++.|... .+++++.+.. . .....|+.. ..+|.++++|+.||.|.|-.+-+.+...++. ..
T Consensus 44 ~~av--~~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~ 112 (846)
T KOG2066|consen 44 CCAV--HDKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FK 112 (846)
T ss_pred HHHh--hcceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cC
Confidence 4444 46788888876 8999986544 3 334445444 6689999999999999999999998888777 45
Q ss_pred CCeEEEEECCC-----CCEEEEecCCCcEEEEECC--CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 103 GPAIGMACHPS-----GGLLATAGADRKVLVWDVD--GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 103 ~~v~~~~~s~~-----~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
.++.+++++|| .+.+++||..| +.++.-. ..+....+..-.++|.++.|.. + ++|-++.+| |++||.
T Consensus 113 rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g--~--lIAWand~G-v~vyd~ 186 (846)
T KOG2066|consen 113 RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG--N--LIAWANDDG-VKVYDT 186 (846)
T ss_pred CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC--c--EEEEecCCC-cEEEec
Confidence 89999999998 56899998888 7776531 1121224556789999999964 3 477777777 999999
Q ss_pred CCCeeEEEeecccce------EEEEEEecCCCEEEEEeCCCEEEEEeCC
Q 005254 176 LAKKCVATLDKHFSR------VTSMAITSDGSTLISAGRDKVVNLWDLR 218 (706)
Q Consensus 176 ~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 218 (706)
.+++.+..++..... ...+.|.++. .|+.| -..+|++..++
T Consensus 187 ~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 187 PTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIK 233 (846)
T ss_pred cccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEe
Confidence 999888776543332 2356777654 45555 34568887776
No 341
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.48 E-value=0.00061 Score=70.78 Aligned_cols=284 Identities=14% Similarity=0.101 Sum_probs=153.2
Q ss_pred CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Q 005254 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH 138 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~ 138 (706)
....|.++.|..++.-+..+..+|.|.+-|.++..... ...-...|.+++||||+++++..+..+++.+-+ .+-.++.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~ 144 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIA 144 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchh
Confidence 34689999999999999999999999999988765432 222468999999999999999998877766543 2222222
Q ss_pred EeeC-----CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEe-----C
Q 005254 139 YFKG-----HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG-----R 208 (706)
Q Consensus 139 ~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~ 208 (706)
...- ..+....+-|-.... =+.|+. |....-+.......-......+.=+.++|-.||+++++.. .
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeT---qfrgs~-gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKET---QFRGSE-GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred ccccccccccccccceecccccce---eeecch-hhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 1110 112222233322111 111111 1111111111110000001122345688999999888832 2
Q ss_pred CCEEEEEeCCCCcc-eeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEE
Q 005254 209 DKVVNLWDLRDYSC-KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 209 dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
...|++||-+ +.. ...-+.......+.+-|.|..+.. +-.-+.++.|.++...+-..-
T Consensus 221 ~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~--------------------iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAA--------------------IQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred ceeEEEeccc-chhhcccCcccccccceeecCCCCeEee--------------------eeecCCCCcEEEEecCCcccc
Confidence 3799999987 322 222223334455666666653322 112233445666654432110
Q ss_pred eeccCccccccccCCCccceeEEEEccCCCeeEE---EeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC
Q 005254 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC---VTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364 (706)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 364 (706)
......+.....+..+++..++..|++ ......+.+|...... . ..+.......... +.|.|.
T Consensus 280 -------~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh-----W-YLKq~l~~~~~~~-~~W~p~ 345 (1265)
T KOG1920|consen 280 -------EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH-----W-YLKQELQFSQKAL-LMWDPV 345 (1265)
T ss_pred -------ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE-----E-EEEEEEecccccc-ccccCC
Confidence 001111222223788999999999988 4445568888776431 1 1111111222222 666666
Q ss_pred CCcEEEEEecCCcEEEEeC
Q 005254 365 EEQYLAVATNIEQVQVYDL 383 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~ 383 (706)
....+.+...+|...+++.
T Consensus 346 ~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 346 TEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CceeEEEEecCCcEEEEEE
Confidence 6666666666666666654
No 342
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=1.4e-07 Score=92.60 Aligned_cols=179 Identities=16% Similarity=0.190 Sum_probs=133.6
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCC--cEEEEE
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR--KVLVWD 130 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~vw~ 130 (706)
.+.+..|....+|++||-+.+.|+.|+..|.|+++++.+|.......+|..+|+.+.-+.||..+++.+.-. -..+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 355667888999999999999999999999999999999999999999999999999999999888765433 467999
Q ss_pred CCC-CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe-ec---ccceEEEEEEecCCCEEEE
Q 005254 131 VDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DK---HFSRVTSMAITSDGSTLIS 205 (706)
Q Consensus 131 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~l~~ 205 (706)
..+ +...+.|. .-.++.|+..... -+.|.......+||++++..+.++ .+ ....-.+..|+|+..+++
T Consensus 1174 ~~s~~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred cccccCcccccc----ccceeehhhhHHH--HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 854 44444443 3467888876544 445555566899999999877653 21 222347788999988766
Q ss_pred EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCC
Q 005254 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS 242 (706)
Q Consensus 206 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (706)
.|| .+||++..+.+..+........-.|.|.|.
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGN 1279 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhheecccccccCCCc
Confidence 356 689999887776665444334444555554
No 343
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.41 E-value=0.001 Score=63.79 Aligned_cols=78 Identities=9% Similarity=0.155 Sum_probs=65.4
Q ss_pred EEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 489 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
........+.+.+++|+...|+.|+.||.|.+||...+.-. +....-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 34467788999999999999999999999999998766332 2234566789999999999999999999999998543
No 344
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00028 Score=68.11 Aligned_cols=205 Identities=20% Similarity=0.253 Sum_probs=150.9
Q ss_pred cceEEcCCCCEEEEee--CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec---cCeEEEEECCCCeEEEE
Q 005254 23 GPLVVSSDGSFIACAC--GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH---SREIRVWDLSTLKCLRS 97 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~--~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~ 97 (706)
..+++++++..++... .+.|.+.|..+.+..+...-.. .-..++++|+++.+.++.. ++.+.+.|..+++....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 3689999999777776 4589999988888777665443 5588999999988877654 68999999999998888
Q ss_pred eeccCCCeEEEEECCCCCEEEEec-CCCcEEEEECCCCeEEE-E---eeCCCCcEEEEEEcCCCCceEEEEEec-CCeEE
Q 005254 98 WKGHDGPAIGMACHPSGGLLATAG-ADRKVLVWDVDGGFCTH-Y---FKGHKGVVSSILFHPDTDKSLLFSGSD-DATVR 171 (706)
Q Consensus 98 ~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~vw~~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~ 171 (706)
...-..+ ..++++|+|+.+.+.. .++.|.+.|..+..... . ...-......+.+.|++...+++-... ++.+.
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 6544445 8999999999776664 68899999977766553 1 112234457789999988644433332 36899
Q ss_pred EEECCCCeeEEE-eecccceEEEEEEecCCCEEEEEeC-CCEEEEEeCCCCcceeeecCc
Q 005254 172 VWDLLAKKCVAT-LDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTY 229 (706)
Q Consensus 172 vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~ 229 (706)
..|..++..... ..........+.++|+|+.+++... .+.+.+.|..+..........
T Consensus 235 ~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 235 KIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred EEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 999988887765 2211115667889999999988854 488999998887776665443
No 345
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.41 E-value=0.0036 Score=63.90 Aligned_cols=464 Identities=12% Similarity=0.097 Sum_probs=237.2
Q ss_pred eEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-eCCCCcEEEEEEcCCCCc---
Q 005254 83 EIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF-KGHKGVVSSILFHPDTDK--- 158 (706)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~--- 158 (706)
.|++++-+ .++..+... +.++..+.+.+...++.++.++.+...++..+...... +.....|.|+.++|-++.
T Consensus 471 ~iRl~ss~--~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~ 547 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWRPP-GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNK 547 (1096)
T ss_pred cEEEEcch--hhhhcccCC-CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCc
Confidence 56776644 344455533 45555566666667777777777777777766522221 224678999999976432
Q ss_pred -eEEEEEecCCeEEEEEC-CCCeeEEEe--e--cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCC--cceeee--cC
Q 005254 159 -SLLFSGSDDATVRVWDL-LAKKCVATL--D--KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDY--SCKLTV--PT 228 (706)
Q Consensus 159 -~~l~~~~~dg~i~vwd~-~~~~~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~--~~~~~~--~~ 228 (706)
.+++.|..+..+.+--. .....+... . .-...|.-.+|-.|..+|+++..||.+.-+.+... ...... ..
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l 627 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTL 627 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccccc
Confidence 36788877666554432 223222211 1 12234555666667889999999999887765433 211111 11
Q ss_pred -cceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccce
Q 005254 229 -YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGF 307 (706)
Q Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (706)
..++.--.+...+ ..++++.++.- ..+|.......+...+..... .
T Consensus 628 Gt~P~~Lr~f~sk~----------------------~t~vfa~sdrP-~viY~~n~kLv~spls~kev~----------~ 674 (1096)
T KOG1897|consen 628 GTQPISLRTFSSKS----------------------RTAVFALSDRP-TVIYSSNGKLVYSPLSLKEVN----------H 674 (1096)
T ss_pred CCCCcEEEEEeeCC----------------------ceEEEEeCCCC-EEEEecCCcEEEeccchHHhh----------h
Confidence 1111111111111 22344444333 333333333222211111110 0
Q ss_pred eEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecC------------
Q 005254 308 TAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI------------ 375 (706)
Q Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~------------ 375 (706)
.+..-++.....++....+.+.+..+.+.++..... .........+++.+ ....+.+.+..
T Consensus 675 ~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irt------vpl~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~ 747 (1096)
T KOG1897|consen 675 MCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRT------VPLGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEY 747 (1096)
T ss_pred hcccccccCCceEEEecCCceEEEEecchhhcceee------ecCCCChhheEecc-cceEEEEEecccccchhhcCCcc
Confidence 111112223334555556666666665543221111 11222333334332 11222222111
Q ss_pred --CcEEEEeCCCceeeEeeeC--CcceEEEeeeeeecCCCEEEEEee----------CCCcEEEEeCCCceEEEEEeCC-
Q 005254 376 --EQVQVYDLSSMSCSYVLAG--HSEIVLCLDTCALSSGKILIVTGS----------KDNSVRLWDSESRCCVGVGTGH- 440 (706)
Q Consensus 376 --~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~- 440 (706)
..++++|.++.+.....+. .+.....+.+.+..+.+.++++|. ..|.|.++.......+.....+
T Consensus 748 ~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~ 827 (1096)
T KOG1897|consen 748 EVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV 827 (1096)
T ss_pred eEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee
Confidence 2466777777665543332 122222222225555455577764 3577888887764444333222
Q ss_pred -CcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEE
Q 005254 441 -MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519 (706)
Q Consensus 441 -~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 519 (706)
.+.+.++..-.. + ++ ++-+..|++|++...+ .......+..++..+...-.|..+++|+--+.+.
T Consensus 828 v~Gav~aL~~fng-k-ll--A~In~~vrLye~t~~~----------eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sit 893 (1096)
T KOG1897|consen 828 VKGAVYALVEFNG-K-LL--AGINQSVRLYEWTTER----------ELRIECNISNPIIALDLQVKGDEIAVGDLMRSIT 893 (1096)
T ss_pred eccceeehhhhCC-e-EE--EecCcEEEEEEccccc----------eehhhhcccCCeEEEEEEecCcEEEEeeccceEE
Confidence 344444443332 2 33 4455689999987653 3444455677888999999999999999888877
Q ss_pred EEeCCCcc--EEEEEee-cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC-------------------CceEEEEeec
Q 005254 520 VWRLPDLV--SVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISD-------------------GSCLKTFEGH 577 (706)
Q Consensus 520 i~d~~~~~--~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------------------~~~~~~~~~~ 577 (706)
+.-.+..+ ....-+. +....+++.+-.+.. ++.+..+|.+.+-..++ |+.+..+. |
T Consensus 894 ll~y~~~eg~f~evArD~~p~Wmtaveil~~d~-ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~-h 971 (1096)
T KOG1897|consen 894 LLQYKGDEGNFEEVARDYNPNWMTAVEILDDDT-YLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFR-H 971 (1096)
T ss_pred EEEEeccCCceEEeehhhCccceeeEEEecCce-EEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeee-e
Confidence 75554333 4433332 667788888776554 44456677777665432 12222332 3
Q ss_pred ccCEEE--EEEEeCCCEEEEEeCCCCEEEE
Q 005254 578 TSSVLR--ASFLTRGAQIVSCGADGLVKLW 605 (706)
Q Consensus 578 ~~~i~~--~~~s~~~~~l~~~~~dg~i~iw 605 (706)
..-|.+ -..+|-+..+..|+.+|.|-+-
T Consensus 972 g~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 972 GSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred cceEeeccccccCCCCcEEEEEccceEEEE
Confidence 333333 1234445567788888877654
No 346
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.38 E-value=0.0037 Score=63.08 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=42.7
Q ss_pred CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccC
Q 005254 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH 619 (706)
Q Consensus 558 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 619 (706)
|.|.-+|+.+++.+-..... .+...-.+.-.+..++.++.||.++.+|.++|+.+...+..
T Consensus 441 g~l~AiD~~tGk~~W~~~~~-~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKED-FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCC-CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 45778888888877665522 22111122335567778888999999999999999888753
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.0028 Score=61.32 Aligned_cols=236 Identities=17% Similarity=0.094 Sum_probs=155.2
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
..+.+..+.++-.....+...+...................+++++.+....+....++.|.+.|.....
T Consensus 38 ~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~---------- 107 (381)
T COG3391 38 VNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT---------- 107 (381)
T ss_pred EcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc----------
Confidence 4555644344433333555555542222221222224455778888888777777778999999955432
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeC---CCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEE
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQ---DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIK 561 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~ 561 (706)
......-......++++|+++.+.++.. ++.+.+.|..+.+.......-..+ ..++++|+|+.++... .++.|.
T Consensus 108 -~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 108 -VLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred -eeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence 1222222236778999999988877765 688999999999888885544444 8999999999766654 788999
Q ss_pred EEEcCCCceEE-E----EeecccCEEEEEEEeCCCEEEEEeCC---CCEEEEECCCCeEEEEeccCCC-cEEEEEEcCCC
Q 005254 562 IWSISDGSCLK-T----FEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHED-KIWALAVGKKT 632 (706)
Q Consensus 562 iwd~~~~~~~~-~----~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~ 632 (706)
+.|........ . .. -......+.++++|.++...... +.+...|..++.....-..-.. ....+.++|+|
T Consensus 186 vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g 264 (381)
T COG3391 186 VIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAG 264 (381)
T ss_pred EEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCC
Confidence 99976665553 1 11 22344568999999977655444 5899999998887765221111 45678899999
Q ss_pred CEEEEEeC-CCcEEEEECCchhH
Q 005254 633 EMFATGGS-DALVNLWHDSTAAE 654 (706)
Q Consensus 633 ~~l~~~~~-dg~i~vw~~~~~~~ 654 (706)
+.+.+... .+.+.+-|..+...
T Consensus 265 ~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 265 KAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred CEEEEEecCCCeEEEEeCCCCce
Confidence 98877643 47777777766543
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.28 E-value=0.0013 Score=63.78 Aligned_cols=224 Identities=12% Similarity=0.130 Sum_probs=124.1
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEE-EecCCCCC
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW-SFDGLSDD 477 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~-~~~~~~~~ 477 (706)
+..+. .+|+++. +++ +.+|...++.....+.... +.-...+|.+.++ +++-..+++|.++ ++....
T Consensus 35 p~~ls--~npngr~-v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~~-- 101 (443)
T PF04053_consen 35 PQSLS--HNPNGRF-VLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNEV-- 101 (443)
T ss_dssp -SEEE--E-TTSSE-EEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-T--
T ss_pred CeeEE--ECCCCCE-EEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCcc--EEEEECCCeEEEEEcCcccc--
Confidence 44454 7788877 444 5678888887554443332 3445678888554 6666668889996 332211
Q ss_pred CCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCC
Q 005254 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557 (706)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 557 (706)
...+. ....+..+-. |.+|...+.+ .|.+||..+++.+..+... +|..+.|++++.+++..+.+
T Consensus 102 ---------~k~i~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 102 ---------VKSIK-LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp ---------T------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-
T ss_pred ---------ceEEc-CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC
Confidence 00010 1112233332 8788877654 8999999999999988743 48999999999999998766
Q ss_pred CcEEEEEcCCC-----------ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEE
Q 005254 558 KTIKIWSISDG-----------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL 626 (706)
Q Consensus 558 g~i~iwd~~~~-----------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 626 (706)
.+.|++.+.. .....+..-...|.+..|..| .++-.+.. .++- +..|+. ..+..-..++.=+
T Consensus 166 -~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yll 238 (443)
T PF04053_consen 166 -SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLL 238 (443)
T ss_dssp -SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEE
T ss_pred -eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEE
Confidence 4888875432 133444333568888999766 44444444 6665 445543 2222224567777
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCchhHHHHH
Q 005254 627 AVGKKTEMFATGGSDALVNLWHDSTAAEREEA 658 (706)
Q Consensus 627 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 658 (706)
...+..+.+.....|+.+..+.++.....-+.
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~ 270 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELDLSELEFKT 270 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--HHHHHHHH
T ss_pred EEEccCCEEEEEECCCCEEEEEECHHHHHHHH
Confidence 88887788998999999999999887665443
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.26 E-value=7.5e-05 Score=71.97 Aligned_cols=193 Identities=12% Similarity=0.030 Sum_probs=114.9
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC---CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCC
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 507 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 507 (706)
+.....+......+..-+|+|+++.+....-.. ..+.++++..+.. .........-...+|+|||+
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-----------~~i~~~~g~~~~P~fspDG~ 250 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-----------PVILNFNGNNGAPAFSPDGS 250 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-----------ceeeccCCccCCccCCCCCC
Confidence 333444455556677778888888544443222 3588888877632 11222333445678999998
Q ss_pred EEEEee-CCCc--EEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CC--cEEEEEcCCCceEEEEeecccCE
Q 005254 508 LVCTGS-QDRT--ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DK--TIKIWSISDGSCLKTFEGHTSSV 581 (706)
Q Consensus 508 ~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i 581 (706)
.|+... .||. |+++|+....... +....+.-+.=.|+|||+.++..+. .| .|.+++.+.... ..+......-
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~ 328 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN 328 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC
Confidence 887544 4554 6777887766333 4433333346689999998876654 44 466677765544 3333233332
Q ss_pred EEEEEEeCCCEEEEEeCC-CC--EEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEE
Q 005254 582 LRASFLTRGAQIVSCGAD-GL--VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFAT 637 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 637 (706)
..-.|+|||++++..+.. |. |.+.|+.++..++.+. +......-.|.++++.++.
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMF 386 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEE
Confidence 367899999999887753 44 6677776666443332 2223334456666666554
No 350
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.24 E-value=0.0042 Score=57.57 Aligned_cols=298 Identities=16% Similarity=0.180 Sum_probs=137.1
Q ss_pred eEEcCCCCEEEEeeC---C-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 25 LVVSSDGSFIACACG---E-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~---~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
=+|.+||+.|+++++ . .+++.|+.+++..+.-.+.........++|+.+.++-......|+--|+++.+....+..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 467899988888776 2 799999999998775554333333567788888887665666899999999887666666
Q ss_pred cCCCeEEEEE--CCCCCEEEEecC----------------------CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCC
Q 005254 101 HDGPAIGMAC--HPSGGLLATAGA----------------------DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDT 156 (706)
Q Consensus 101 ~~~~v~~~~~--s~~~~~l~~~~~----------------------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 156 (706)
....+-...| +.|+..++-.-. ...|.--|+.+|+....+. -...+..+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence 6665554555 446666554311 2356667888887655544 56678899999986
Q ss_pred CceEEEEEec----CC-eEEEEECC-CCeeEEEeecc--cceEEEEEEecCCCEEEEEe-----CCCEEEEEeCCCCcce
Q 005254 157 DKSLLFSGSD----DA-TVRVWDLL-AKKCVATLDKH--FSRVTSMAITSDGSTLISAG-----RDKVVNLWDLRDYSCK 223 (706)
Q Consensus 157 ~~~~l~~~~~----dg-~i~vwd~~-~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~-----~dg~i~~w~~~~~~~~ 223 (706)
.. ++.-+. +. .-++|-++ .+...+.+..+ ...+..=-|.|||..|.--+ .+..|.-++..+++..
T Consensus 200 p~--li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 200 PT--LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp EE--EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred CC--EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 65 333332 22 12556443 23333333322 23455556899998766533 2456777888877654
Q ss_pred eeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCC
Q 005254 224 LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDS 303 (706)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (706)
...+.+ ...-...++++..+..--.. ....... ... . ....+..|++++...+...................
T Consensus 278 ~~~~~p-~~~H~~ss~Dg~L~vGDG~d---~p~~v~~-~~~-~--~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~ 349 (386)
T PF14583_consen 278 RLMEMP-WCSHFMSSPDGKLFVGDGGD---APVDVAD-AGG-Y--KIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDR 349 (386)
T ss_dssp EEEEE--SEEEEEE-TTSSEEEEEE--------------------------EEEEEETTTTEEEEEEE-------BTTBS
T ss_pred EEEeCC-ceeeeEEcCCCCEEEecCCC---CCccccc-ccc-c--eecCCcEEEEeccccCceeeeeeccCcceeecCCC
Confidence 322222 22233344555422111000 0000000 000 0 01123467777877765443333222111111111
Q ss_pred ccceeEEEEccCCCeeEEEee-CCceEEEEe
Q 005254 304 KRGFTAATVLPSNQGLLCVTA-DQQLLLYTT 333 (706)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 333 (706)
...-....|+|+++.++..+. .|...+|-.
T Consensus 350 q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 350 QVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp STT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 123467789999999876554 455555543
No 351
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.23 E-value=0.00029 Score=68.01 Aligned_cols=182 Identities=16% Similarity=0.091 Sum_probs=111.6
Q ss_pred eecCCCEEEEEeeCC---CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccc
Q 005254 406 ALSSGKILIVTGSKD---NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482 (706)
Q Consensus 406 ~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 482 (706)
+.+++..+....-.. ..+.++++.+++...... ..+.-..-+|+|+|+.++++...||...+|-++.....
T Consensus 200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----- 273 (425)
T COG0823 200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----- 273 (425)
T ss_pred cCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-----
Confidence 666666644433222 358889998887665544 33445567899999988889998887766655433211
Q ss_pred ccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CC--cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCC-C
Q 005254 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD-K 558 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g 558 (706)
...+....+.-+.-.|+|||+.++..+. .| .|.+++......... ......-..-.|+|||++++..+.. |
T Consensus 274 ----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-T~~~~~~~~p~~SpdG~~i~~~~~~~g 348 (425)
T COG0823 274 ----LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-TFSGGGNSNPVWSPDGDKIVFESSSGG 348 (425)
T ss_pred ----ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-eccCCCCcCccCCCCCCEEEEEeccCC
Confidence 1112222222336689999999887654 34 366777766654332 2222222367899999999887643 4
Q ss_pred c--EEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC
Q 005254 559 T--IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD 599 (706)
Q Consensus 559 ~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 599 (706)
. |.+.|+.++...+.+. +......-.|.++|+.+...+..
T Consensus 349 ~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 349 QWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence 4 6777776665444443 33344456778888877655443
No 352
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.23 E-value=6.6e-05 Score=71.59 Aligned_cols=91 Identities=16% Similarity=0.182 Sum_probs=72.1
Q ss_pred EEEEEccCCeEE--Eee-cCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEE
Q 005254 42 INIVDLSNASIK--STI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLA 118 (706)
Q Consensus 42 i~i~d~~~~~~~--~~l-~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 118 (706)
-.+|+...++.. ... -.....|.|.+++|+.+.|+.|+.||.|.+||...+... +....-..+.++|+|+|..++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEE
Confidence 667777655432 111 236778999999999999999999999999998776433 333456788999999999999
Q ss_pred EecCCCcEEEEECCCC
Q 005254 119 TAGADRKVLVWDVDGG 134 (706)
Q Consensus 119 ~~~~d~~i~vw~~~~~ 134 (706)
+|+..|.+.+||+.-.
T Consensus 316 V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 316 VGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCceEEEEEeecC
Confidence 9999999999998543
No 353
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.21 E-value=0.0091 Score=60.28 Aligned_cols=109 Identities=18% Similarity=0.136 Sum_probs=66.7
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCC-ccEE---E-------EEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGS-DTIT---A-------LALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~-~~i~---~-------l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
++.+++....+.|+-+|..+|+.+-...... ..+. + +++. +..++.++.++.|.-.|.++|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4544444455689999999999875554211 1111 1 2222 346677788999999999999998876
Q ss_pred eccCCC-eEEEEECC---CCCEEEEec------CCCcEEEEECCCCeEEEEee
Q 005254 99 KGHDGP-AIGMACHP---SGGLLATAG------ADRKVLVWDVDGGFCTHYFK 141 (706)
Q Consensus 99 ~~~~~~-v~~~~~s~---~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~ 141 (706)
...... -..+.-+| ++ .++++. .+|.|.-+|.++|+.+..+.
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 532110 01111122 34 455543 26889999999999887654
No 354
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=98.20 E-value=0.00034 Score=66.34 Aligned_cols=94 Identities=15% Similarity=0.243 Sum_probs=66.1
Q ss_pred ccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcE-EEEEEccC--------------
Q 005254 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI-WSVEFSPV-------------- 547 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~s~~-------------- 547 (706)
.......+......+.+++.+|++++.|+.+.-|.|.++|+.++..++.+++..+.= .-+.....
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 333455566667789999999999999998888999999999998888777654421 11111111
Q ss_pred ---CC-EEEEecCCCcEEEEEcCCCceEEEEee
Q 005254 548 ---DQ-VVITASGDKTIKIWSISDGSCLKTFEG 576 (706)
Q Consensus 548 ---~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~ 576 (706)
.. +++-+-.-|.|.||+++.|..+..+..
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 11 234456688899999998888777653
No 355
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.19 E-value=0.0051 Score=61.00 Aligned_cols=202 Identities=18% Similarity=0.251 Sum_probs=114.7
Q ss_pred eccceEEcCCCCEEEEeeC--C----eEEEEEccCCeEEEe-ecCCCccEEEEEEccCCCEEEEEec-----------cC
Q 005254 21 GGGPLVVSSDGSFIACACG--E----SINIVDLSNASIKST-IEGGSDTITALALSPDDKLLFSSGH-----------SR 82 (706)
Q Consensus 21 ~~~~~~~s~dg~~l~~~~~--~----~i~i~d~~~~~~~~~-l~~~~~~i~~l~~s~~~~~l~s~~~-----------d~ 82 (706)
..+...+||||+++|++.+ + .++++|+.+++.+.. +... .-..+.|.+|++.++.... ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3346889999999998843 2 599999999987642 2321 1234999999888765532 33
Q ss_pred eEEEEECCCCeE--EEEeeccCCC--eEEEEECCCCCEEEEec---CC-CcEEEEECCCC----eEEEEeeCCCCcE-EE
Q 005254 83 EIRVWDLSTLKC--LRSWKGHDGP--AIGMACHPSGGLLATAG---AD-RKVLVWDVDGG----FCTHYFKGHKGVV-SS 149 (706)
Q Consensus 83 ~i~iwd~~~~~~--~~~~~~~~~~--v~~~~~s~~~~~l~~~~---~d-~~i~vw~~~~~----~~~~~~~~~~~~v-~~ 149 (706)
.|..|.+.+... ...+...... ...+..++|+++|+... .+ ..+.+.+...+ .....+......+ ..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 488888876642 2334443332 67889999999988643 23 45888888775 2233333333333 33
Q ss_pred EEEcCCCCceEEEEE--ecCCeEEEEECCCCee---EEEeecccc--eEEEEEEecCCCEEEEE-eCCC--EEEEEeCCC
Q 005254 150 ILFHPDTDKSLLFSG--SDDATVRVWDLLAKKC---VATLDKHFS--RVTSMAITSDGSTLISA-GRDK--VVNLWDLRD 219 (706)
Q Consensus 150 ~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~l~~~-~~dg--~i~~w~~~~ 219 (706)
+... ++..++.+. ...+.|...++..... ...+..+.. .+..+.. .+.+|+.. -.++ .|+++++..
T Consensus 283 v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 283 VDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-
T ss_pred EEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCC
Confidence 4333 344344442 3456777778776652 224444544 3444444 34445544 3343 688889884
Q ss_pred CcceeeecC
Q 005254 220 YSCKLTVPT 228 (706)
Q Consensus 220 ~~~~~~~~~ 228 (706)
+.....++.
T Consensus 359 ~~~~~~~~~ 367 (414)
T PF02897_consen 359 GKESREIPL 367 (414)
T ss_dssp TEEEEEEES
T ss_pred CcEEeeecC
Confidence 444444433
No 356
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=98.18 E-value=0.014 Score=61.17 Aligned_cols=198 Identities=13% Similarity=0.146 Sum_probs=117.5
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCCcc--------EEEEEEc----------------cCCCEEEEEeccCeEE
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGSDT--------ITALALS----------------PDDKLLFSSGHSREIR 85 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~--------i~~l~~s----------------~~~~~l~s~~~d~~i~ 85 (706)
++.+.++...+.|+-.|..+|+.+-.++..... -..+++- ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 554444444568999999999987655432110 1122221 1345788888999999
Q ss_pred EEECCCCeEEEEeeccCCCeE-------------EEEECC--CCCEEEEecC----------CCcEEEEECCCCeEEEEe
Q 005254 86 VWDLSTLKCLRSWKGHDGPAI-------------GMACHP--SGGLLATAGA----------DRKVLVWDVDGGFCTHYF 140 (706)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~v~-------------~~~~s~--~~~~l~~~~~----------d~~i~vw~~~~~~~~~~~ 140 (706)
-.|.++|+.+..+.. .+.|. .+.-+| .+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999987642 22211 111222 2345666532 588999999999988776
Q ss_pred eCC---------CCc--------E-EEEEEcCCCCceEEEEE----------------ecCCeEEEEECCCCeeEEEeec
Q 005254 141 KGH---------KGV--------V-SSILFHPDTDKSLLFSG----------------SDDATVRVWDLLAKKCVATLDK 186 (706)
Q Consensus 141 ~~~---------~~~--------v-~~~~~~~~~~~~~l~~~----------------~~dg~i~vwd~~~~~~~~~~~~ 186 (706)
..- .+. + ..+++.++....++-+| ...+.|.-.|.++|+..-.++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 421 011 1 22333333222111111 1235677778889988877654
Q ss_pred ccce---------EEEEEEec-CCC---EEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 187 HFSR---------VTSMAITS-DGS---TLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 187 ~~~~---------v~~~~~~~-~~~---~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
.... ..-+.+.. +|+ .++.++.+|.+.+.|-++++.+...+.
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 2111 11222332 553 788999999999999999998766543
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.17 E-value=0.0018 Score=61.95 Aligned_cols=211 Identities=11% Similarity=0.096 Sum_probs=121.6
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCC------C-c--------------------------ccccceeEE
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA------E-Q--------------------------PMNLKAKAV 489 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~------~-~--------------------------~~~~~~~~~ 489 (706)
.|+.+.+.++.. -|+++...|.|-+|.+...+... . + .....+...
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 578888988865 58888889999999876543221 0 0 001223334
Q ss_pred EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee--------cCCcEEEEEEcc-----CC---CEEEE
Q 005254 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--------HKRGIWSVEFSP-----VD---QVVIT 553 (706)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~v~~~~~s~-----~~---~~l~~ 553 (706)
+....++|++++.|.= -++|+|..+|.+.|.|++....+..-.- ....|+++.|+- |+ -.|++
T Consensus 82 ~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 4556789999999844 4999999999999999988777765321 233578888863 33 47889
Q ss_pred ecCCCcEEEEEcCC---Cce----EEEEeecccCEEEEE-EEeCC--------------------CEEEEEeCCCCEEEE
Q 005254 554 ASGDKTIKIWSISD---GSC----LKTFEGHTSSVLRAS-FLTRG--------------------AQIVSCGADGLVKLW 605 (706)
Q Consensus 554 ~~~dg~i~iwd~~~---~~~----~~~~~~~~~~i~~~~-~s~~~--------------------~~l~~~~~dg~i~iw 605 (706)
|...|.+.+|.+.- +.- ......+.+++..+. |..+. .-++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 99999999998741 111 112223556666554 32221 123334446779999
Q ss_pred ECCCCeEEEEeccCCCcEEEEEE-----cCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 606 TVRTGECIATYDKHEDKIWALAV-----GKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 606 d~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
...+.+.........-....+.+ ...+..|++...+|.++++.+..=++.
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 99988876655532223334445 235677888999999999999875543
No 358
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.14 E-value=0.007 Score=56.18 Aligned_cols=275 Identities=11% Similarity=0.053 Sum_probs=130.5
Q ss_pred eEeCCCCcEEEEEecC--CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE
Q 005254 360 KFLGEEEQYLAVATNI--EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 437 (706)
Q Consensus 360 ~~~~~~~~~l~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 437 (706)
+|.++..+++..+..+ ..+++.|+.+++..+.-.+........ +.+++++. ++-......++-.|+.+.+....+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~--~~s~~~~~-~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGG--FLSPDDRA-LYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT---EE-TTSSE-EEEEETTTEEEEEETTT--EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccce--EEecCCCe-EEEEECCCeEEEEECCcCcEEEEE
Confidence 3444344444444434 467888999988876665443222111 15577766 444445568899999998877766
Q ss_pred eCCCcCeEEEEEecCCCeEEEEecC-----------------------CCeEEEEEecCCCCCCCcccccceeEEEeecC
Q 005254 438 TGHMGAVGAVAFSKKLQNFLVSGSS-----------------------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494 (706)
Q Consensus 438 ~~~~~~v~~~~~~~~~~~~l~~~~~-----------------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (706)
.....-+....|..+.....+++.. ...|.--|+.++ .........
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-----------~~~~v~~~~ 187 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-----------ERKVVFEDT 187 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-------------EEEEEEES
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-----------ceeEEEecC
Confidence 6666666555554321112222211 112222233322 334444556
Q ss_pred cceEEEEEcCCCCEEEEeeCCC-----cEEEEeCCC-ccEEEEEeecC--CcEEEEEEccCCCEEEEe-----cCCCcEE
Q 005254 495 KDINSLAVAPNDSLVCTGSQDR-----TACVWRLPD-LVSVVTFRGHK--RGIWSVEFSPVDQVVITA-----SGDKTIK 561 (706)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~-~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~-----~~dg~i~ 561 (706)
..+..+.|+|...-++.=+..| .-+||-+.+ +.....+..+. ..+..=-|.|||..|.-- +.+..|.
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence 6778899999665555444333 135665442 33333333322 234555789999876652 2355677
Q ss_pred EEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC----------------CEEEEECCCCeEEEEe---------
Q 005254 562 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG----------------LVKLWTVRTGECIATY--------- 616 (706)
Q Consensus 562 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----------------~i~iwd~~~~~~~~~~--------- 616 (706)
-+|+.+++...... ......+.-++||++++-=+.|. -|+++++..++.....
T Consensus 268 ~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~ 345 (386)
T PF14583_consen 268 GYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVL 345 (386)
T ss_dssp EE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------B
T ss_pred eeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceee
Confidence 78888886644332 23455667778888776533332 4667888877643211
Q ss_pred ccCCC-cEEEEEEcCCCCEEE-EEeCCCcEEEEECC
Q 005254 617 DKHED-KIWALAVGKKTEMFA-TGGSDALVNLWHDS 650 (706)
Q Consensus 617 ~~~~~-~v~~~~~s~~~~~l~-~~~~dg~i~vw~~~ 650 (706)
.++.. .=....||||+++++ ++...|...||-++
T Consensus 346 ~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 346 DGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred cCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 11111 124678999999876 55668888887654
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.14 E-value=0.0034 Score=59.56 Aligned_cols=177 Identities=18% Similarity=0.212 Sum_probs=106.4
Q ss_pred CcEEEEeCCCceeeEeeeC-CcceEEEeeeeeecCC----CEEEEEeeC----------CCcEEEEeCCCc----eEEEE
Q 005254 376 EQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSG----KILIVTGSK----------DNSVRLWDSESR----CCVGV 436 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~----~~~l~~~~~----------dg~i~i~d~~~~----~~~~~ 436 (706)
..|+++|..+.+.+..+.- ....+.++..+....+ ..++++|+. .|.+.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3577788777766554443 2334555554444442 566777643 289999999884 12222
Q ss_pred --EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC
Q 005254 437 --GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514 (706)
Q Consensus 437 --~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 514 (706)
.....++|++++--.+ .++++ .++.|.+|++.... ...... .......++++... ++++++|+.
T Consensus 82 i~~~~~~g~V~ai~~~~~---~lv~~-~g~~l~v~~l~~~~-------~l~~~~-~~~~~~~i~sl~~~--~~~I~vgD~ 147 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNG---RLVVA-VGNKLYVYDLDNSK-------TLLKKA-FYDSPFYITSLSVF--KNYILVGDA 147 (321)
T ss_dssp EEEEEESS-EEEEEEETT---EEEEE-ETTEEEEEEEETTS-------SEEEEE-EE-BSSSEEEEEEE--TTEEEEEES
T ss_pred EEEEeecCcceEhhhhCC---EEEEe-ecCEEEEEEccCcc-------cchhhh-eecceEEEEEEecc--ccEEEEEEc
Confidence 2345788998887733 33333 34789999998763 111112 22222355555554 569999998
Q ss_pred CCcEEEEeCCC-ccEEEEEee--cCCcEEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 515 DRTACVWRLPD-LVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 515 dg~i~i~d~~~-~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
...+.++.... ...+..+.. ....++++.|-++++.++.+..+|.+.++...
T Consensus 148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 88888885543 222222222 34568889998776799999999999999875
No 360
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.13 E-value=0.0041 Score=57.65 Aligned_cols=231 Identities=12% Similarity=0.124 Sum_probs=130.3
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCC-CceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 484 (706)
....++. ++.|+++| +.+++.. ......... ...|..+...++-+ .+++- .|+.+.++++.............
T Consensus 3 ~~~~~~~-L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 3 ADSWGDR-LLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cccCCCE-EEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC-EEEEE-cCCccEEEEchhhcccccccccc
Confidence 3445566 88888888 8999883 233333222 23399999999866 34433 34999999998764333111000
Q ss_pred ce----eEEEeecCcceEEEE--EcCCC-CEEEEeeCCCcEEEEeCCCc-----cEEEEEeecCCcEEEEEEccCCCEEE
Q 005254 485 KA----KAVVAAHGKDINSLA--VAPND-SLVCTGSQDRTACVWRLPDL-----VSVVTFRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 485 ~~----~~~~~~~~~~i~~~~--~s~~~-~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~ 552 (706)
.. ..........+...+ -...+ ..|+++ ..+.|.+|..... +....+. -...+.+++|. ++.++
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKIC 152 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEE
Confidence 00 000111223344444 22233 445544 4558888887653 3444444 45778899998 56777
Q ss_pred EecCCCcEEEEEcCCCceEEEEeecc------------cCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE--Eecc
Q 005254 553 TASGDKTIKIWSISDGSCLKTFEGHT------------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TYDK 618 (706)
Q Consensus 553 ~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~ 618 (706)
.|..++ ..+.|+.++.....+.... .++..+.. +++.+|++- |..-...| ..|++.+ .+.-
T Consensus 153 v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~W 227 (275)
T PF00780_consen 153 VGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVN-KNGEPSRKSTIQW 227 (275)
T ss_pred EEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEc-CCCCcCcccEEEc
Confidence 776665 8899998776544432111 22333333 345677653 33233334 3555443 2222
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 619 HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 619 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
.....++++ ...||+..+. +.|.||++.+++..
T Consensus 228 -~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 228 -SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELV 260 (275)
T ss_pred -CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEE
Confidence 335556666 4568887665 45999999998654
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.11 E-value=0.0077 Score=57.13 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=125.7
Q ss_pred cEEEEeCCCceEEEEEeC-CCcCeEEEE---EecC---CCeEEEEecC---------C-CeEEEEEecCCCCCCCccccc
Q 005254 422 SVRLWDSESRCCVGVGTG-HMGAVGAVA---FSKK---LQNFLVSGSS---------D-HTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~-~~~~v~~~~---~~~~---~~~~l~~~~~---------d-~~i~i~~~~~~~~~~~~~~~~ 484 (706)
.|++.|..+.+.+..+.- ....+.+++ +..+ ...+++.|.. . |.|.++++.... ......
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~---~~~~~l 79 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP---ENNFKL 79 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------EE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc---ccceEE
Confidence 577777777766655432 233444443 3322 1457777643 2 899999998741 001112
Q ss_pred ceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc-EEEEEee-cCCcEEEEEEccCCCEEEEecCCCcEEE
Q 005254 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKI 562 (706)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i 562 (706)
+.. ......++|++++-- ++. |+++. ++.|.+|++...+ ....-.- ....++++... +++++.|+....+.+
T Consensus 80 ~~i-~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 80 KLI-HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEE-EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEE-EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence 222 223456788888876 444 44443 5789999998777 3333221 23355555554 669999998888888
Q ss_pred EEcCC-CceEEEEee--cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC-------C--eEEEEec-cCCCcEEEE---
Q 005254 563 WSISD-GSCLKTFEG--HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-------G--ECIATYD-KHEDKIWAL--- 626 (706)
Q Consensus 563 wd~~~-~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~--~~~~~~~-~~~~~v~~~--- 626 (706)
+..+. +..+..+.. ....++++.|.++++.++.++.+|.+.++.... + +...... ...+.|+++
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 86543 332333322 344688899987778999999999999998762 2 2222222 224567777
Q ss_pred EEcCC--CC------EEEEEeCCCcEEEEEC
Q 005254 627 AVGKK--TE------MFATGGSDALVNLWHD 649 (706)
Q Consensus 627 ~~s~~--~~------~l~~~~~dg~i~vw~~ 649 (706)
.+.|. +. .++-++.+|.|.+.-.
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 55552 22 3777889999985443
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.06 E-value=0.0099 Score=55.12 Aligned_cols=223 Identities=17% Similarity=0.187 Sum_probs=129.5
Q ss_pred cCCCCEEEEeeCCeEEEEEccCC-eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe--------
Q 005254 28 SSDGSFIACACGESINIVDLSNA-SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-------- 98 (706)
Q Consensus 28 s~dg~~l~~~~~~~i~i~d~~~~-~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------- 98 (706)
...++.|+.|+.+.+++++.... +..... +...|..+...|+-+.|++-+ |+.+.++++........-
T Consensus 4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCCEEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 34678888898888999998333 333333 234499999999888877765 489999999765443311
Q ss_pred ------eccCCCeEEEE--ECCC-CCEEEEecCCCcEEEEECCCC-----eEEEEeeCCCCcEEEEEEcCCCCceEEEEE
Q 005254 99 ------KGHDGPAIGMA--CHPS-GGLLATAGADRKVLVWDVDGG-----FCTHYFKGHKGVVSSILFHPDTDKSLLFSG 164 (706)
Q Consensus 99 ------~~~~~~v~~~~--~s~~-~~~l~~~~~d~~i~vw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 164 (706)
......+...+ -.+. ..+|+++ ....|.+|.+... +..+.+. -...+..++|.+ +. ++.|
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~--~~--i~v~ 154 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG--NK--ICVG 154 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC--CE--EEEE
Confidence 11233444444 1223 3445544 4568999988653 3445554 558889999984 33 6666
Q ss_pred ecCCeEEEEECCCCeeEEEeeccc------------ceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcce--eeecCcc
Q 005254 165 SDDATVRVWDLLAKKCVATLDKHF------------SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK--LTVPTYE 230 (706)
Q Consensus 165 ~~dg~i~vwd~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~--~~~~~~~ 230 (706)
..++ ..+.|+.++.....+.... .++..+.. +++.+|++. +..-.+.|. .++.. ..+.-..
T Consensus 155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~ 229 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSS 229 (275)
T ss_pred eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcCC
Confidence 6555 8889998776544432111 12333333 345555543 333333443 33222 2233333
Q ss_pred eeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeec
Q 005254 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290 (706)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 290 (706)
.+..+.+..+ +++..+. +.|.+|++.++.+.+..
T Consensus 230 ~p~~~~~~~p-------------------------yli~~~~-~~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 230 APQSVAYSSP-------------------------YLIAFSS-NSIEVRSLETGELVQTI 263 (275)
T ss_pred chhEEEEECC-------------------------EEEEECC-CEEEEEECcCCcEEEEE
Confidence 3333333221 5555555 55999999998665443
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.06 E-value=0.00039 Score=70.29 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=107.1
Q ss_pred cceEEcCCCCEEEEee-------CC--eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc------------
Q 005254 23 GPLVVSSDGSFIACAC-------GE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS------------ 81 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~-------~~--~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d------------ 81 (706)
+..++||||+.+|+.. +. .|.+++. .+.....+.+. ..+.-.|+|||+.|++....
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred ccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 4789999999999987 22 5777775 33333334443 37899999999988877532
Q ss_pred CeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEE---EECCCCeE-E---EEee-CCCCcEEEEEEc
Q 005254 82 REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV---WDVDGGFC-T---HYFK-GHKGVVSSILFH 153 (706)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v---w~~~~~~~-~---~~~~-~~~~~v~~~~~~ 153 (706)
+.+.+.++..++... ...+.|..+.|||||.++|... ++.|.+ -....|.. + ..+. .-...+..+.|.
T Consensus 430 gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 430 GQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred ceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 223333443333322 2356799999999999999876 477777 44445541 1 1122 233446889999
Q ss_pred CCCCceEEEEEecCCeEEEEECC-CCeeEEEeec--ccceEEEEEEecCCCEEEEEeCCCEEEE
Q 005254 154 PDTDKSLLFSGSDDATVRVWDLL-AKKCVATLDK--HFSRVTSMAITSDGSTLISAGRDKVVNL 214 (706)
Q Consensus 154 ~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 214 (706)
.++. |+.+..++.-.+|.+. .|.....+.. ...++..++=+++ .++....+|.+.+
T Consensus 506 ~~~~---L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 506 TGDS---LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred cCCE---EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 9866 3444444444455432 1222222222 2456767766653 4666666764433
No 364
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.05 E-value=0.0028 Score=65.21 Aligned_cols=143 Identities=18% Similarity=0.232 Sum_probs=100.7
Q ss_pred CCCEEEEE-eccCeEEEEECCCCeEEEEeeccCCC-eEEEEECC-----CCCEEEEecCCCcEEEEECCCC--eEEEE-e
Q 005254 71 DDKLLFSS-GHSREIRVWDLSTLKCLRSWKGHDGP-AIGMACHP-----SGGLLATAGADRKVLVWDVDGG--FCTHY-F 140 (706)
Q Consensus 71 ~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~-----~~~~l~~~~~d~~i~vw~~~~~--~~~~~-~ 140 (706)
+.++|..- .....|+-.|++.|+.+..++.|... |..++-.. +..-...|-.+..+..||.+-. +++.. .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444433 34678999999999999999988654 55543321 1223455666788999998643 23321 1
Q ss_pred --eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 141 --KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 141 --~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
-.......|++-+.+|. +|.|+.+|.||+||-...+....+++-..+|.++..+.||++++..+ +..|.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~---iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGY---IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCce---EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 12455678888887765 99999999999999544444455677788999999999999888776 566777775
No 365
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.03 E-value=0.0057 Score=56.19 Aligned_cols=221 Identities=13% Similarity=0.047 Sum_probs=130.5
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
+.++.+.++.+--..+.|.-|+..+++.... . ..+.+.++..-..+. .|+++... +.+++....... ..
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~-~-~p~~~~~~~~~d~~g-~Lv~~~~g--~~~~~~~~~~~~------t~ 100 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRVF-P-SPGGFSSGALIDAGG-RLIACEHG--VRLLDPDTGGKI------TL 100 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEEE-E-CCCCcccceeecCCC-eEEEEccc--cEEEeccCCcee------EE
Confidence 6677776677777788888898876643322 2 222334443333333 35444333 445554332110 00
Q ss_pred eeEEE-eecCcceEEEEEcCCCCEEEEeeC-----C----CcEEEEeCC-CccEEEEEeecCCcEEEEEEccCCCEEEEe
Q 005254 486 AKAVV-AAHGKDINSLAVAPNDSLVCTGSQ-----D----RTACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554 (706)
Q Consensus 486 ~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~-----d----g~i~i~d~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 554 (706)
..... .......+...+.|+|.+.+..-. . ..=.+|.+. .+.....+..+-..-+.|+||||++.|+.+
T Consensus 101 ~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 101 LAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred eccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 00000 111234567888899887775443 0 111344444 566666666656666789999999888877
Q ss_pred cCC-CcEEEEEcCC--Cc---e--EEEEeecccCEEEEEEEeCCCEEEEEeCCC-CEEEEECCCCeEEEEeccCCCcEEE
Q 005254 555 SGD-KTIKIWSISD--GS---C--LKTFEGHTSSVLRASFLTRGAQIVSCGADG-LVKLWTVRTGECIATYDKHEDKIWA 625 (706)
Q Consensus 555 ~~d-g~i~iwd~~~--~~---~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~ 625 (706)
... +.|.-|++.. +. . ...+....+..-.++...+|.+.+++..+| .|.+|+.. |+++..+..+...+++
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 654 7788887752 11 1 112222345556677888888776555554 89999987 9999999887778888
Q ss_pred EEEc-CCCCEEEEE
Q 005254 626 LAVG-KKTEMFATG 638 (706)
Q Consensus 626 ~~~s-~~~~~l~~~ 638 (706)
++|- ++.+.|.+.
T Consensus 260 ~~FgG~~~~~L~iT 273 (307)
T COG3386 260 PAFGGPDLNTLYIT 273 (307)
T ss_pred ceEeCCCcCEEEEE
Confidence 8884 444544433
No 366
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=98.02 E-value=0.0046 Score=58.93 Aligned_cols=348 Identities=16% Similarity=0.153 Sum_probs=166.1
Q ss_pred EEEEEccCCCEEEEEeccCeEEE---EECC-----CCeEEEEeec---cC--CCeEEEEEC-----------CCCCEEEE
Q 005254 64 TALALSPDDKLLFSSGHSREIRV---WDLS-----TLKCLRSWKG---HD--GPAIGMACH-----------PSGGLLAT 119 (706)
Q Consensus 64 ~~l~~s~~~~~l~s~~~d~~i~i---wd~~-----~~~~~~~~~~---~~--~~v~~~~~s-----------~~~~~l~~ 119 (706)
..++.+|++++||.+..+..+.+ |+.. .+.......+ +. ..|+++.+- +|...+++
T Consensus 5 ~~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V 84 (415)
T PF14655_consen 5 CSISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV 84 (415)
T ss_pred ceEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Confidence 35789999999999977766655 6431 1222222222 11 467766553 35678999
Q ss_pred ecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCc-------eEEEEEecCCeEEEEECCCCeeEEEeecccceEE
Q 005254 120 AGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK-------SLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVT 192 (706)
Q Consensus 120 ~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 192 (706)
|..+|.|++|.. +|.++..-.-|..+|..+.+...... .-|..-.. +.|.+.|-.+- ...++.....+.
T Consensus 85 G~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Idg~sL--~~~L~~~~~~~~ 160 (415)
T PF14655_consen 85 GTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIIDGFSL--FSVLRACRNQVA 160 (415)
T ss_pred EecccEEEEEec-cchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEecHHH--HHHHHHHHHhhh
Confidence 999999999996 67766666668999999988542211 11333333 44555542111 111111111111
Q ss_pred EEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccc-cc-cchhhhccccccceEEEEe
Q 005254 193 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLS-SY-NQQTIKKKRRSLEIHFITV 270 (706)
Q Consensus 193 ~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 270 (706)
...+..++ ......=..+.|.++....+........ .....+..... +. .-.............+++.
T Consensus 161 ~~~~~~~~---~~~~~~L~ykKw~l~~~~~i~D~~~~G~-------~~~~~fd~l~~aS~~gf~a~~~~s~~~~~~~i~~ 230 (415)
T PF14655_consen 161 RGAASGSD---SPAPPPLSYKKWNLQSQDTINDAAICGP-------MPPSTFDHLVTASIGGFNAKYRSSPPRMSRYITV 230 (415)
T ss_pred hhhhcccc---cCCCCccceeEecCCCCCcEeeEEEecC-------CCCcHHHHHHhhhcccccceeecCCcceEEEEEe
Confidence 11111111 0011112355666654443322211000 00001110000 00 0000011222334578888
Q ss_pred cCCCeEEEEECCCCeEEeeccC-cc-ccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeee----ccccceeeE
Q 005254 271 GERGIVRMWNADSACLYEQKSS-DV-TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE----VPEKKMELI 344 (706)
Q Consensus 271 ~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~ 344 (706)
|.+-.+..+....+........ .. ........ .+ ...+.......-....... .++......
T Consensus 231 G~~P~v~f~~~~e~~s~~~ls~va~~aVas~l~s---av---------~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (415)
T PF14655_consen 231 GSSPFVSFYYASEGSSQPLLSDVASSAVASKLTS---AV---------SGWLGWGSWRSEQQPQEKQPPEPKPEPAAPLP 298 (415)
T ss_pred cCCceEEEEEccCCCCcccHHHHHHHHHHHHHHh---hh---------HhhcccCCCCCccccccccccccCcCCCcccc
Confidence 8888888887665421100000 00 00000000 00 0000000000000000000 001112233
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecC---------------
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS--------------- 409 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------- 409 (706)
....+......+..++..| .+.+.++..+-|.|.++|+.++..++.+++..+.-...-......
T Consensus 299 ~r~~l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred eEEeeccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCc
Confidence 3344455556677788777 488999999999999999999988887777554322211111111
Q ss_pred -CCEEEEEeeCCCcEEEEeCCCceEEEEEe
Q 005254 410 -GKILIVTGSKDNSVRLWDSESRCCVGVGT 438 (706)
Q Consensus 410 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 438 (706)
...+++-+-..|.|.+|.+.++..+..+.
T Consensus 378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 378 FALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 12345556678899999999887665443
No 367
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.99 E-value=0.019 Score=56.09 Aligned_cols=214 Identities=12% Similarity=0.078 Sum_probs=108.5
Q ss_pred cEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce------EEEEEeCCCcCeEEEEEe
Q 005254 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC------CVGVGTGHMGAVGAVAFS 450 (706)
Q Consensus 377 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~v~~~~~~ 450 (706)
.|.+|+........ +.-..+.+.++. +.. +.. |++-..||.++++|+.... .+....-....+....+.
T Consensus 62 ~I~iys~sG~ll~~-i~w~~~~iv~~~--wt~-~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGKLLSS-IPWDSGRIVGMG--WTD-DEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCCEeEE-EEECCCCEEEEE--ECC-CCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccC
Confidence 37777766554333 322236777776 544 445 6667789999999986433 111111111222222333
Q ss_pred cCCCeEEEEecCCCeEEEEEecCCCCCCC-ccc-ccceeEE-EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc
Q 005254 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAE-QPM-NLKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 527 (706)
Q Consensus 451 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~-~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 527 (706)
.+| +++ -..++.+.+. ........ ... ....... ............++.+....+....++.+.+.+-...+
T Consensus 137 ~~G--ivv-Lt~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 137 KNG--IVV-LTGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred CCC--EEE-ECCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence 343 232 2334443333 32221100 000 0000000 00011110112344455555555555666644433221
Q ss_pred EEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeec-ccCEEEEEEEeCCCEEEEEeCCCCEEEEE
Q 005254 528 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (706)
Q Consensus 528 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 606 (706)
. +. ..+++..++.||+++++|.-..+|.+.+.+..-.+.+.++... ......+.|.-++..++.- ...+.+..
T Consensus 212 ~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 212 Q---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred c---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 1 22 3468999999999999999999999999987666666666544 3466778887664433332 33455554
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.013 Score=53.97 Aligned_cols=210 Identities=14% Similarity=0.106 Sum_probs=130.3
Q ss_pred ceEEcCCCCEEEEee--CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec-
Q 005254 24 PLVVSSDGSFIACAC--GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG- 100 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~--~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~- 100 (706)
.-.+.++.+.|+... ++.|.-|+..+++... +. +.+.+.++..-..+..|+++.. .+.+++.+++..+..+..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence 356778888666554 3489999988776432 32 2334455555555555655532 367777776665433321
Q ss_pred ----cCCCeEEEEECCCCCEEEEecC---------CCcEEEEECC-CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec
Q 005254 101 ----HDGPAIGMACHPSGGLLATAGA---------DRKVLVWDVD-GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166 (706)
Q Consensus 101 ----~~~~v~~~~~s~~~~~l~~~~~---------d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 166 (706)
.....+.+...|+|.+.++... ...-.+|-++ .+..+..+..+-..-+.|+||||++. ++++=+.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~t-ly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKT-LYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCE-EEEEeCC
Confidence 1245567888999987666433 1112455554 56666666666677789999999874 4555556
Q ss_pred CCeEEEEECCC--Ce-----eEEEeecccceEEEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCc-ceeeeEEe
Q 005254 167 DATVRVWDLLA--KK-----CVATLDKHFSRVTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTY-EMVEAVCA 237 (706)
Q Consensus 167 dg~i~vwd~~~--~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~-~~~~~~~~ 237 (706)
.+.|.-|++.. +. .......+.+..-.++...+|.+-+++..+| .|..|+.+ ++.+..+..+ ..+...+|
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 68888887752 11 1122233456677788888888765554444 89999988 8877777766 44555555
Q ss_pred eC
Q 005254 238 IP 239 (706)
Q Consensus 238 ~~ 239 (706)
--
T Consensus 263 gG 264 (307)
T COG3386 263 GG 264 (307)
T ss_pred eC
Confidence 43
No 369
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.98 E-value=0.033 Score=58.41 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=73.9
Q ss_pred CCEEEEEeccCeEEEEECCCCeEEEEeeccCCC--------eEEEEEC----------------CCCCEEEEecCCCcEE
Q 005254 72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP--------AIGMACH----------------PSGGLLATAGADRKVL 127 (706)
Q Consensus 72 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~s----------------~~~~~l~~~~~d~~i~ 127 (706)
+..|..++.++.|.-.|.++|+.+.++...... ...+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567777888899999999999999887643221 1123332 1345788888999999
Q ss_pred EEECCCCeEEEEeeCCCCcEE-------------EEEEcC--CCCceEEEEEec----------CCeEEEEECCCCeeEE
Q 005254 128 VWDVDGGFCTHYFKGHKGVVS-------------SILFHP--DTDKSLLFSGSD----------DATVRVWDLLAKKCVA 182 (706)
Q Consensus 128 vw~~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~ 182 (706)
-.|.++|+.+..+. ..+.|. .+.-.| .++ .++.|+. +|.|+-+|.++|+.+.
T Consensus 274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g--~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT--TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECC--EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999999887764 222221 011111 012 2555542 6889999999999887
Q ss_pred Eee
Q 005254 183 TLD 185 (706)
Q Consensus 183 ~~~ 185 (706)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 764
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.93 E-value=0.0011 Score=68.18 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=100.7
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcC-eEEEEEecC----CCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA-VGAVAFSKK----LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~----~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
..+|........++-.|++.|+.+.....+... |..++-... ...-.+.|-.+..+..||.+-..... . .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~----v-~ 568 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL----V-D 568 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce----e-e
Confidence 333444456678999999999999998877644 555543211 11235677788889999987542100 0 0
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEc
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 565 (706)
............+|++-+.+| ++|+|+.+|.||+||-........+++-..+|..|..+.||++++..+.. .+.+++.
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred ccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 011112345567888888777 88999999999999954334444566778999999999999998876554 4777764
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.87 E-value=0.003 Score=64.13 Aligned_cols=148 Identities=11% Similarity=0.032 Sum_probs=88.4
Q ss_pred CccEEEEEEccCCCEEEEEe------ccC--eEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCC--------
Q 005254 60 SDTITALALSPDDKLLFSSG------HSR--EIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGAD-------- 123 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~------~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------- 123 (706)
...+.+.++||||+.+|... .|. .|.+++. .+.. ..+.. ....+.-.|+|||+.|++....
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEec
Confidence 34678999999999988654 233 4555554 2233 33322 2247888999999988877532
Q ss_pred ----CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE---EECCCCee-E---EEee-cccceE
Q 005254 124 ----RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV---WDLLAKKC-V---ATLD-KHFSRV 191 (706)
Q Consensus 124 ----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v---wd~~~~~~-~---~~~~-~~~~~v 191 (706)
+.+.+.+++.++... ...+.|..+.|+|||....+++ +|.|.+ -....|.. + ..+. .-...+
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~---~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII---GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE---CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 233333444443322 2356799999999999844444 467777 44444541 1 1122 222346
Q ss_pred EEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 192 TSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 192 ~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
..+.|..++.++ ++..++.-.+|.+
T Consensus 500 ~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 500 VSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ccceEecCCEEE-EEecCCCCceEEE
Confidence 889999998854 5555554445543
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=8.2e-05 Score=71.17 Aligned_cols=92 Identities=16% Similarity=0.245 Sum_probs=79.2
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEE-EEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW-SVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
..+.-+.|+|.-.++|.+..+|.+.+..+. .+.+.+++-|...++ +++|.|||+.||+|-.||+|++.|++++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 457789999999999999999999999998 888888887887887 999999999999999999999999999987766
Q ss_pred Ee-ecccCEEEEEEE
Q 005254 574 FE-GHTSSVLRASFL 587 (706)
Q Consensus 574 ~~-~~~~~i~~~~~s 587 (706)
.. .....|.++.|+
T Consensus 100 ~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 100 FLFSVETDISKGIWD 114 (665)
T ss_pred cccccccchheeecc
Confidence 32 244567777775
No 373
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.84 E-value=4.9e-06 Score=79.11 Aligned_cols=198 Identities=19% Similarity=0.249 Sum_probs=129.5
Q ss_pred CeEEEEEecCC-CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEee----CCC
Q 005254 443 AVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGS----QDR 516 (706)
Q Consensus 443 ~v~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~----~dg 516 (706)
.+.++++.-+. +.++++|..+|.|-+-.+...... ......++..+.++++|++ |.+.||+|- .|.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc--------cceecccccccccccccccccHHHHHhhhhhhcccC
Confidence 44455544332 358889999999999888764321 3344556778889999998 566777764 356
Q ss_pred cEEEEeCCCc--cE--EEEEee-cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC-ceEEEEeecccCEEEEEEEe-C
Q 005254 517 TACVWRLPDL--VS--VVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLT-R 589 (706)
Q Consensus 517 ~i~i~d~~~~--~~--~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-~ 589 (706)
.+.|||+.++ .+ ...+.+ ......+++|..+.+++.+|.....+.++|++-. .....+ ....+..+...| .
T Consensus 130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFS 207 (783)
T ss_pred CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCC
Confidence 7999999876 22 122222 3345568899988999999999999999998622 222222 233455667777 6
Q ss_pred CCEEEEEeCCCCEEEEE-CCCCe-EEEEeccC----CCcEEEEEEcCCCC-EEEEEeC-CCcEEEEECCc
Q 005254 590 GAQIVSCGADGLVKLWT-VRTGE-CIATYDKH----EDKIWALAVGKKTE-MFATGGS-DALVNLWHDST 651 (706)
Q Consensus 590 ~~~l~~~~~dg~i~iwd-~~~~~-~~~~~~~~----~~~v~~~~~s~~~~-~l~~~~~-dg~i~vw~~~~ 651 (706)
+.|+++-. ||.|.+|| ..+-+ ++..+... ...+..++|.|... .+++... .++|+.+++..
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 67887765 89999999 33322 23222222 23488999998644 4555554 47788888654
No 374
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.84 E-value=0.0033 Score=46.24 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=69.0
Q ss_pred eEEEEEcC---CC-CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEE
Q 005254 497 INSLAVAP---ND-SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 572 (706)
Q Consensus 497 i~~~~~s~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 572 (706)
|+++++.. || +.|++|+.|..|++|+- .+.+..+. ....|++++-... ..++.+..+|+|-+|+- ...+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 45666554 32 68999999999999983 35555555 4567888877765 66888999999999985 33344
Q ss_pred EEeecccCEEEEEEEeCC----CEEEEEeCCCCEEE
Q 005254 573 TFEGHTSSVLRASFLTRG----AQIVSCGADGLVKL 604 (706)
Q Consensus 573 ~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~i 604 (706)
..+. ...++++.+..-. .-|++|-.+|.|-+
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 4442 3346666654422 26888888887743
No 375
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.0027 Score=54.78 Aligned_cols=196 Identities=13% Similarity=0.128 Sum_probs=119.6
Q ss_pred eeeeeeeccceEEcCCCCEEEEeeCC------eEEEEEccCC-eEEEeecCCCccEEEEEEccCCCEEEEEec-------
Q 005254 15 VLQQFYGGGPLVVSSDGSFIACACGE------SINIVDLSNA-SIKSTIEGGSDTITALALSPDDKLLFSSGH------- 80 (706)
Q Consensus 15 ~~~~~~~~~~~~~s~dg~~l~~~~~~------~i~i~d~~~~-~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~------- 80 (706)
.-..||+. =.|||||.+|+...++ .|-|||...+ +.+..+..|.-.-..+.+.+||+.++.+..
T Consensus 111 ~~RHfyGH--Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpd 188 (366)
T COG3490 111 EGRHFYGH--GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPD 188 (366)
T ss_pred cCceeecc--cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccc
Confidence 33445554 4799999999888764 4889998744 355677778777789999999999988632
Q ss_pred -----------cCeEEEEECCCCeEEEE--ee--ccCCCeEEEEECCCCCEEEEecCCC-----cEEEEECCCCeEEEEe
Q 005254 81 -----------SREIRVWDLSTLKCLRS--WK--GHDGPAIGMACHPSGGLLATAGADR-----KVLVWDVDGGFCTHYF 140 (706)
Q Consensus 81 -----------d~~i~iwd~~~~~~~~~--~~--~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~ 140 (706)
...+.+-|..+|.++.+ +. -+.-.|..++..+||..++.+-..| --.+=-...++.+..+
T Consensus 189 fgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~ 268 (366)
T COG3490 189 FGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFL 268 (366)
T ss_pred cCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCccc
Confidence 23455556556665543 22 2456788899999987666553222 1112222233333333
Q ss_pred eC-------CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEE
Q 005254 141 KG-------HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213 (706)
Q Consensus 141 ~~-------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 213 (706)
.- ...-|-+++.+-+ ...+.++.-..+...+||..+|..+..-.- .....++- ...-+++.+.+|.+.
T Consensus 269 ~~pee~~~~~anYigsiA~n~~-~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~--~~~gf~vssg~G~~~ 343 (366)
T COG3490 269 DLPEEQTAAFANYIGSIAANRR-DGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAA--AKGGFAVSSGQGRII 343 (366)
T ss_pred CCCHHHHHHHHhhhhheeeccc-CCeEEEecCCCCeEEEEEcCCCcEEecccc--ccccccee--ccCceEEecCCceEE
Confidence 21 1234666777654 344455555667788999999987754321 11222322 233355566688888
Q ss_pred EEeC
Q 005254 214 LWDL 217 (706)
Q Consensus 214 ~w~~ 217 (706)
++.-
T Consensus 344 ~~s~ 347 (366)
T COG3490 344 FYSR 347 (366)
T ss_pred eccc
Confidence 7743
No 376
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00011 Score=70.31 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=80.9
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeE-EEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAI-GMACHPSGGLLATAGADRKVLVWDVDGGFCTH 138 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~ 138 (706)
...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++..|...++ +++|.|||+.||+|-.||+|++-|++++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3568889999999999999999999999987 788888987888887 99999999999999999999999999998776
Q ss_pred Ee-eCCCCcEEEEEEcC
Q 005254 139 YF-KGHKGVVSSILFHP 154 (706)
Q Consensus 139 ~~-~~~~~~v~~~~~~~ 154 (706)
.+ ......|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 63 22456777888864
No 377
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.80 E-value=0.046 Score=54.27 Aligned_cols=240 Identities=12% Similarity=0.102 Sum_probs=133.1
Q ss_pred eecCCCEEEEEeeCCC----cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC----------CeEEEEEe
Q 005254 406 ALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD----------HTIKVWSF 471 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------~~i~i~~~ 471 (706)
++|+++.++++-+..| .++++|+.+++.+...-.. .....+.|.++++.++.+...+ ..|+.|++
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~ 209 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL 209 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence 7888998666655555 4999999999776542111 1222399999988666665433 23566666
Q ss_pred cCCCCCCCcccccceeEEEeecCcc--eEEEEEcCCCCEEEEeeCC----CcEEEEeCCCc----cEEEEEeecCCcEEE
Q 005254 472 DGLSDDAEQPMNLKAKAVVAAHGKD--INSLAVAPNDSLVCTGSQD----RTACVWRLPDL----VSVVTFRGHKRGIWS 541 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~----~~~~~~~~~~~~v~~ 541 (706)
.+... .....+...... ...+..++|+++|+..... ..+.+.++..+ .....+......+..
T Consensus 210 gt~~~--------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 210 GTPQS--------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp TS-GG--------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred CCChH--------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 54311 112333333332 5678899999998864432 34788888764 333444444444443
Q ss_pred EEEccCCCEEEEec---CCCcEEEEEcCCCce---EEEEeecccCEEEEEEEeCCCEEEEEe-CCC--CEEEEECCCCeE
Q 005254 542 VEFSPVDQVVITAS---GDKTIKIWSISDGSC---LKTFEGHTSSVLRASFLTRGAQIVSCG-ADG--LVKLWTVRTGEC 612 (706)
Q Consensus 542 ~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg--~i~iwd~~~~~~ 612 (706)
..-+..+.+++... ..+.|...++.+... ...+..+...+.-..+...+.+|+... .++ .|+++++..+..
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 33333444444332 245677778776653 335555665444444555555665544 444 688999984444
Q ss_pred EEEec-cCCCcEEEEEEcCCCCEEE-EEeC---CCcEEEEECCchhH
Q 005254 613 IATYD-KHEDKIWALAVGKKTEMFA-TGGS---DALVNLWHDSTAAE 654 (706)
Q Consensus 613 ~~~~~-~~~~~v~~~~~s~~~~~l~-~~~~---dg~i~vw~~~~~~~ 654 (706)
...+. .-.+.|..+...+++..+. +.+. -+++..||+.+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 44444 3345567776666665433 2222 46788888877653
No 378
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.78 E-value=0.0048 Score=45.42 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=67.5
Q ss_pred eEEEEE---ecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEE
Q 005254 444 VGAVAF---SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520 (706)
Q Consensus 444 v~~~~~---~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 520 (706)
|+++++ ..+|.+-|++|+.|..|++|+-.. . .........|++++-... ..++.+..+|+|-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------~-~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGv 67 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------I-VAEITETDKVTSLCSLGG-GRFAYALANGTVGV 67 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------E-EEEEecccceEEEEEcCC-CEEEEEecCCEEEE
Confidence 455554 456678899999999999998542 2 222234456777777766 56888999999999
Q ss_pred EeCCCccEEEEEeecCCcEEEEEEcc-C--C-CEEEEecCCCcEE
Q 005254 521 WRLPDLVSVVTFRGHKRGIWSVEFSP-V--D-QVVITASGDKTIK 561 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~~v~~~~~s~-~--~-~~l~~~~~dg~i~ 561 (706)
|+- ...+...+. +..++++++.. + | ..|++|-.+|.|-
T Consensus 68 Y~~--~~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 68 YDR--SQRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EeC--cceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 974 344444553 33366666544 2 2 3688888888764
No 379
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.77 E-value=0.016 Score=48.70 Aligned_cols=215 Identities=14% Similarity=0.072 Sum_probs=114.3
Q ss_pred CCEEEEEeeCCCcEEEEeCCCceEEEE-EeCCCcCeEEEEEecCC--CeEEEEecCCCeEEEEEecCCCCCCCcccccce
Q 005254 410 GKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKL--QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA 486 (706)
Q Consensus 410 ~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 486 (706)
.+.++.+--..|.|.-||..+.+..+. +... +..++.+--.+ +.+.+.++..-.|--||...... ........
T Consensus 26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a--~v~~t~~e 101 (310)
T KOG4499|consen 26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESA--KVYRTLFE 101 (310)
T ss_pred cceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEccccccee--eeeeeccc
Confidence 333455555566777788877654433 2221 12233322211 22444445444455566332110 00000000
Q ss_pred eEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecC--------CcEEEEEEccCCCEEEE-ecCC
Q 005254 487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK--------RGIWSVEFSPVDQVVIT-ASGD 557 (706)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~-~~~d 557 (706)
.. ........+.-.++|+|++.+ |...-.=..+....+.+..-+.+|. .--..++|+.+.+.+.. -+.+
T Consensus 102 v~-~d~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 102 VQ-PDRKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred cC-chHHhcccccCccCCCCceee-eeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCc
Confidence 00 011134456677899999843 3321111122222233333333333 22356889888776654 4556
Q ss_pred CcEEEEE--cCCCc-----eEEEEeec----ccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEE
Q 005254 558 KTIKIWS--ISDGS-----CLKTFEGH----TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL 626 (706)
Q Consensus 558 g~i~iwd--~~~~~-----~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 626 (706)
-+|.-|| ..+|. .+..++.. .-..-.++...+|.+.++.-..++|...|..+|+.+..+.-....|+++
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 7787787 55553 23333321 1112334556678888888888999999999999999999889999999
Q ss_pred EEcC
Q 005254 627 AVGK 630 (706)
Q Consensus 627 ~~s~ 630 (706)
+|--
T Consensus 260 cFgG 263 (310)
T KOG4499|consen 260 CFGG 263 (310)
T ss_pred EecC
Confidence 9953
No 380
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.73 E-value=9e-06 Score=77.43 Aligned_cols=202 Identities=16% Similarity=0.286 Sum_probs=129.4
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE--EEEEeCCCcCeEEEEEecCCCeEEEEec----CCCeEEEEEe
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGS----SDHTIKVWSF 471 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~d~~i~i~~~ 471 (706)
.+.|+++....+ +.++++|..+|.|.+-......- -...+++....++++|++-..+.|++|- .|..+.+||+
T Consensus 58 y~kcva~~y~~d-~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 58 YVKCVASFYGND-RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CceeehhhcCCc-hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 455555333333 45588999999999987765432 2334567788999999987666777774 4678999999
Q ss_pred cCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc-EEEEEeecCCcEEEEEEcc-CCC
Q 005254 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSVEFSP-VDQ 549 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~s~-~~~ 549 (706)
...-..+........ +......++++-.+.+++.+|...+.+.++|++... ....+ ....+..+..+| .+.
T Consensus 137 ~s~ltvPke~~~fs~-----~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSS-----STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPN 209 (783)
T ss_pred ccccCCCcccccccc-----ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCC
Confidence 876322111111111 133345578888899999999999999999987331 11111 223456677888 677
Q ss_pred EEEEecCCCcEEEEEc-CCC-ceEEEEee----cccCEEEEEEEeCCC-EEEEEeCC-CCEEEEECC
Q 005254 550 VVITASGDKTIKIWSI-SDG-SCLKTFEG----HTSSVLRASFLTRGA-QIVSCGAD-GLVKLWTVR 608 (706)
Q Consensus 550 ~l~~~~~dg~i~iwd~-~~~-~~~~~~~~----~~~~i~~~~~s~~~~-~l~~~~~d-g~i~iwd~~ 608 (706)
++++.. ||.|.+||. .+- .++..+.. ....+..++|+|... .|++...| ++|+.+|+.
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 777755 999999993 222 22222221 122488899998533 45555554 689999885
No 381
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.69 E-value=0.032 Score=49.05 Aligned_cols=177 Identities=15% Similarity=0.137 Sum_probs=110.5
Q ss_pred eEEcCCCCEEEEeeCC---eEEEEEccCCeEEEeecCCC-ccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 25 LVVSSDGSFIACACGE---SINIVDLSNASIKSTIEGGS-DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~---~i~i~d~~~~~~~~~l~~~~-~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
+.|..||.++-+.+.. .|+.+|+.+++......-.. --=-.++...| ++..-.-.++...+||..+.+.+.++.-
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~~~y 128 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIGTFPY 128 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEEEEE-
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEEEEec
Confidence 7777777666555432 79999999998765443221 11123333333 3333445688999999999999998874
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCC-----CCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH-----KGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
. +.=..++ .|++.|+.......|.++|.++.+....+... -..++-+.+. +| .+.|=.-....|...|.
T Consensus 129 ~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G--~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 129 P-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG--KIYANVWQTDRIVRIDP 202 (264)
T ss_dssp S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT--EEEEEETTSSEEEEEET
T ss_pred C-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC--EEEEEeCCCCeEEEEeC
Confidence 3 4445565 45666777666788999999888777665432 2245667776 23 23555556677888999
Q ss_pred CCCeeEEEeec------------c---cceEEEEEEecCCCEEEEEeC
Q 005254 176 LAKKCVATLDK------------H---FSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 176 ~~~~~~~~~~~------------~---~~~v~~~~~~~~~~~l~~~~~ 208 (706)
.+|+....+.- + ..-.+.+++.|....++..|.
T Consensus 203 ~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 203 ETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 99998876521 0 235789999988777766653
No 382
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.68 E-value=0.00015 Score=43.01 Aligned_cols=39 Identities=33% Similarity=0.669 Sum_probs=34.6
Q ss_pred CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEE
Q 005254 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD 88 (706)
Q Consensus 50 ~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd 88 (706)
++....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345677778999999999999999999999999999996
No 383
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.65 E-value=0.00018 Score=42.60 Aligned_cols=39 Identities=23% Similarity=0.491 Sum_probs=34.9
Q ss_pred CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 610 GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 610 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
++++..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778999999999999999999999999999996
No 384
>PHA02713 hypothetical protein; Provisional
Probab=97.59 E-value=0.0056 Score=62.50 Aligned_cols=146 Identities=10% Similarity=0.064 Sum_probs=78.8
Q ss_pred CCCCEEEEeeCCC-----cEEEEeCCCccEEE--EEeecCCcEEEEEEccCCCEEEEecCCC------------------
Q 005254 504 PNDSLVCTGSQDR-----TACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASGDK------------------ 558 (706)
Q Consensus 504 ~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg------------------ 558 (706)
-+|++.+.|+.++ .+..||..+.+-.. .+.........++ -+++..+.|+.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 3677888888764 37888887653222 1111111111222 2577777777653
Q ss_pred -----cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC------CEEEEECCC-C--eEEEEeccCCCcEE
Q 005254 559 -----TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG------LVKLWTVRT-G--ECIATYDKHEDKIW 624 (706)
Q Consensus 559 -----~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------~i~iwd~~~-~--~~~~~~~~~~~~v~ 624 (706)
.+..||..+.+-...-.-...........-+|+..+.|+.++ .+..||..+ . +.+..+........
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 477788766533211111111122223344666667776542 467899886 3 34444444333344
Q ss_pred EEEEcCCCCEEEEEeCCC--cEEEEECCchh
Q 005254 625 ALAVGKKTEMFATGGSDA--LVNLWHDSTAA 653 (706)
Q Consensus 625 ~~~~s~~~~~l~~~~~dg--~i~vw~~~~~~ 653 (706)
...+ +++..++||.|| ++..||+.+.+
T Consensus 508 ~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 508 TILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 4444 788888999888 55556555443
No 385
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.56 E-value=0.035 Score=50.08 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=91.0
Q ss_pred ccceEEcCCCCEEEEee--CC--eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEE-CCCCeEE-
Q 005254 22 GGPLVVSSDGSFIACAC--GE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD-LSTLKCL- 95 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~--~~--~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd-~~~~~~~- 95 (706)
....++|+||+.+|+.. ++ .++++... +.....+.+ ..++.-.|++++...+....+...+++. ..+++..
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-GPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCC-CcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 34799999999999887 44 56666543 222233343 3788899999987777766666666663 3333322
Q ss_pred EEeec--cCCCeEEEEECCCCCEEEEec---CCCcEEEEECC---CC--e----EEEEeeCCCCcEEEEEEcCCCCceEE
Q 005254 96 RSWKG--HDGPAIGMACHPSGGLLATAG---ADRKVLVWDVD---GG--F----CTHYFKGHKGVVSSILFHPDTDKSLL 161 (706)
Q Consensus 96 ~~~~~--~~~~v~~~~~s~~~~~l~~~~---~d~~i~vw~~~---~~--~----~~~~~~~~~~~v~~~~~~~~~~~~~l 161 (706)
..+.. -...|..+.+||||.++|... .++.|.+=-+. .+ . ...........+..+.|.+++. .++
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-L~V 181 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-LVV 181 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-EEE
Confidence 12221 122899999999999988865 35777776553 23 1 1122223456889999999865 333
Q ss_pred EEEecCCeEEE
Q 005254 162 FSGSDDATVRV 172 (706)
Q Consensus 162 ~~~~~dg~i~v 172 (706)
+....++.+..
T Consensus 182 ~~~~~~~~~~~ 192 (253)
T PF10647_consen 182 LGRSAGGPVVR 192 (253)
T ss_pred EeCCCCCceeE
Confidence 33444443443
No 386
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.50 E-value=0.1 Score=50.19 Aligned_cols=281 Identities=15% Similarity=0.176 Sum_probs=145.2
Q ss_pred CCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeE---eCCCCcEEEEEecCCcEEEEeCCCc-----
Q 005254 315 SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF---LGEEEQYLAVATNIEQVQVYDLSSM----- 386 (706)
Q Consensus 315 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~~~~i~~~d~~~~----- 386 (706)
+...+++++..|.+.+|...........+.....+ ..+|..+.. .+..+...++.-.-..+.+|.+...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l---~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL---KDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEec---CCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence 34678899999999999986554333344444433 345555543 3433433333355578888877321
Q ss_pred ----eeeEeeeCCcceEEEeeeeeec----CCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEE
Q 005254 387 ----SCSYVLAGHSEIVLCLDTCALS----SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 458 (706)
Q Consensus 387 ----~~~~~~~~~~~~i~~~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 458 (706)
-.+.....|.-.-.+..+|.-+ .++.++.+-+.||.+.+++-+.-.....+.. .--...+.+.+... .++
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tD-sfv 190 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTD-SFV 190 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCC-EEE
Confidence 1222333333332333322322 2346689999999999999877655444443 33344577777755 788
Q ss_pred EecCCCeEEEEEecCCCCCCC-------------cccccceeEEEeecCcceEEE---EEcCCCCEEEEeeCCCcEEEEe
Q 005254 459 SGSSDHTIKVWSFDGLSDDAE-------------QPMNLKAKAVVAAHGKDINSL---AVAPNDSLVCTGSQDRTACVWR 522 (706)
Q Consensus 459 ~~~~d~~i~i~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~---~~s~~~~~l~~~~~dg~i~i~d 522 (706)
+++.+..+.-|.......... ..........+. -+..+..+ .++.....+++-+ ...+...+
T Consensus 191 t~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~ 268 (418)
T PF14727_consen 191 TASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG-ERSLFCLK 268 (418)
T ss_pred EecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe-cceEEEEc
Confidence 888888999998754321111 111111222221 22233333 3332333333333 34566665
Q ss_pred CCCccEEEEEeecCCcEEEEE-Ec----cCC---CEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE---eCCC
Q 005254 523 LPDLVSVVTFRGHKRGIWSVE-FS----PVD---QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL---TRGA 591 (706)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~-~s----~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s---~~~~ 591 (706)
. +|......+ ......+++ |. ..+ ..++.++.++++.||. ..+++........+| ++... .-..
T Consensus 269 ~-~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~~~~~~G 343 (418)
T PF14727_consen 269 D-NGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVANFNGLKG 343 (418)
T ss_pred C-CCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCE-EEEecccCCCCc
Confidence 4 343333322 222222222 11 122 2478888999999986 334433333222232 33322 2233
Q ss_pred EEEEEeCCCCEEEEEC
Q 005254 592 QIVSCGADGLVKLWTV 607 (706)
Q Consensus 592 ~l~~~~~dg~i~iwd~ 607 (706)
.|++-+.+|.+.+-=+
T Consensus 344 ~IV~Ls~~G~L~v~YL 359 (418)
T PF14727_consen 344 LIVSLSDEGQLSVSYL 359 (418)
T ss_pred eEEEEcCCCcEEEEEe
Confidence 6666677777666544
No 387
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.00016 Score=60.13 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=67.3
Q ss_pred CCCEEEEeeCCCcEEEEeCCCccEEEE-EeecCCcEEE-EEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-cCE
Q 005254 505 NDSLVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSV 581 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i 581 (706)
-+.-+++|+.+|.|.+|.......... ...-...|.+ +.--.++.+..+++.||.|+.|++..++.+.....|. .++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 356789999999999998762211111 1111122222 2222345688899999999999999888887777776 455
Q ss_pred EEEEEEeCCCEEEEE--eCCCCEEEEECC
Q 005254 582 LRASFLTRGAQIVSC--GADGLVKLWTVR 608 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~--~~dg~i~iwd~~ 608 (706)
..+..+..+++|+.+ +.|..++.|++.
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchh
Confidence 555555556666666 666666666664
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.00015 Score=60.22 Aligned_cols=143 Identities=10% Similarity=0.103 Sum_probs=87.2
Q ss_pred EEEeeCCCcEEEEeCCCccEEEEE-eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce-EEEEeecccCEE-EEE
Q 005254 509 VCTGSQDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC-LKTFEGHTSSVL-RAS 585 (706)
Q Consensus 509 l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~-~~~ 585 (706)
+..-+.+|.|+-+++...+....- .-+... .....-+..+++|+.+|.|++|...-... ......-...|. .+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 334455677777666543222111 112222 11122356799999999999998752111 111111112222 122
Q ss_pred EEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCC-CcEEEEEEcCCCCEEEEE--eCCCcEEEEECCchhH
Q 005254 586 FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE-DKIWALAVGKKTEMFATG--GSDALVNLWHDSTAAE 654 (706)
Q Consensus 586 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~--~~dg~i~vw~~~~~~~ 654 (706)
-..++.+..+++.||.|+.|++.-++.+...-.|. .++..+..+..++.++.+ |.|..++.|++..-..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence 23345588899999999999999999888887777 666666666677777777 7788888888765543
No 389
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.0072 Score=57.19 Aligned_cols=152 Identities=9% Similarity=0.102 Sum_probs=104.7
Q ss_pred ecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCe------EEEEecCCCeEEEEEecCCCCCCCc
Q 005254 407 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN------FLVSGSSDHTIKVWSFDGLSDDAEQ 480 (706)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~l~~~~~d~~i~i~~~~~~~~~~~~ 480 (706)
..+.+.++..+.....++-.|++.|+.+.....+.. |+-+.+.|+.+. --+.|-.+..|.-||.+-....
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--- 417 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--- 417 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---
Confidence 345566677888888999999999999999887766 777777776541 1345667888888987643211
Q ss_pred ccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcE
Q 005254 481 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 560 (706)
Q Consensus 481 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 560 (706)
....... .-........|.+-..+| ++++|+.+|.|++||-........+++-..+|..+..+.+|++|+..+. ..+
T Consensus 418 kl~~~q~-kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyL 494 (644)
T KOG2395|consen 418 KLAVVQS-KQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYL 494 (644)
T ss_pred eeeeeec-cccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEE
Confidence 0000000 011123445677776666 8999999999999997444445567888899999999999999877654 446
Q ss_pred EEEEc
Q 005254 561 KIWSI 565 (706)
Q Consensus 561 ~iwd~ 565 (706)
.+.++
T Consensus 495 lLi~t 499 (644)
T KOG2395|consen 495 LLIDT 499 (644)
T ss_pred EEEEE
Confidence 66654
No 390
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.44 E-value=0.11 Score=49.09 Aligned_cols=193 Identities=14% Similarity=0.172 Sum_probs=100.8
Q ss_pred CCCCEEEEeeCC--eEEEEEccC----CeEEEeecC---CC----ccEEEEEEccCCCEEEEE--e----ccCeEEEEEC
Q 005254 29 SDGSFIACACGE--SINIVDLSN----ASIKSTIEG---GS----DTITALALSPDDKLLFSS--G----HSREIRVWDL 89 (706)
Q Consensus 29 ~dg~~l~~~~~~--~i~i~d~~~----~~~~~~l~~---~~----~~i~~l~~s~~~~~l~s~--~----~d~~i~iwd~ 89 (706)
.+.++|+..+-. .|+|+|+.+ .++.+.++. +. ..-..+-.-|+|+.++++ + ..|.+.+.|-
T Consensus 85 ~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 85 KERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp --S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred ccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 367888888744 899999873 345555543 11 122334456789999886 2 2457899999
Q ss_pred CCCeEEEEeeccC---CCeEEEEECCCCCEEEEecC--------------------CCcEEEEECCCCeEEEEeeCCC--
Q 005254 90 STLKCLRSWKGHD---GPAIGMACHPSGGLLATAGA--------------------DRKVLVWDVDGGFCTHYFKGHK-- 144 (706)
Q Consensus 90 ~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~--------------------d~~i~vw~~~~~~~~~~~~~~~-- 144 (706)
++.+....+.... .--..+.+.|..+.+++... ..++.+||+.+.+.++.+.--.
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 9988888876533 23456788888888888641 3589999999999999887433
Q ss_pred CcEEEEEEcCCCCceEEEEE-ecCCeEEEEEC-CCCe----eEEEeecc-----------------cceEEEEEEecCCC
Q 005254 145 GVVSSILFHPDTDKSLLFSG-SDDATVRVWDL-LAKK----CVATLDKH-----------------FSRVTSMAITSDGS 201 (706)
Q Consensus 145 ~~v~~~~~~~~~~~~~l~~~-~~dg~i~vwd~-~~~~----~~~~~~~~-----------------~~~v~~~~~~~~~~ 201 (706)
..+..+.|..+-+...-++| .-.+.|..|-- +.++ .+..+... ..-|+.+.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 34667888665443333333 34445555533 3332 12222111 24578999999999
Q ss_pred EEEEEe-CCCEEEEEeCCCCc
Q 005254 202 TLISAG-RDKVVNLWDLRDYS 221 (706)
Q Consensus 202 ~l~~~~-~dg~i~~w~~~~~~ 221 (706)
+|+... ..|.|+.||+.+..
T Consensus 325 fLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTT
T ss_pred EEEEEcccCCcEEEEecCCCC
Confidence 998876 58999999998643
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0029 Score=65.23 Aligned_cols=112 Identities=18% Similarity=0.281 Sum_probs=81.8
Q ss_pred cEEEEEEccCCCEEEEEeccCeEEEEECCCC-eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Q 005254 62 TITALALSPDDKLLFSSGHSREIRVWDLSTL-KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF 140 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 140 (706)
++..++..-.+-+++.|+..|.+-..|+... .+...-..-.++|++++|+.||+.++.|-.+|.|.+||...++.++.+
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 3344444445678899999999999888653 222222334689999999999999999999999999999999999999
Q ss_pred eCCCCcEEEEEEcC-CCCceEEEEEecCCeEEEEEC
Q 005254 141 KGHKGVVSSILFHP-DTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 141 ~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~i~vwd~ 175 (706)
..|..+.+.+-++- +++...++++...|. +|.+
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 88877766665532 122234778777775 5654
No 392
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.053 Score=47.72 Aligned_cols=178 Identities=13% Similarity=0.163 Sum_probs=117.1
Q ss_pred ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcc--eeeeEEeeCCCCCcccccccccchhhhccccc
Q 005254 185 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE--MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS 262 (706)
Q Consensus 185 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (706)
.+....+.++.|+|+.+.|++......-.+|=..+++.+.+++... ....+....++.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-------------------- 141 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-------------------- 141 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE--------------------
Confidence 4455669999999999999999988888888888899998887653 344555555442
Q ss_pred cceEEEEecCCCeEEEEECCCCe-EEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccce
Q 005254 263 LEIHFITVGERGIVRMWNADSAC-LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 341 (706)
Q Consensus 263 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 341 (706)
..++--.++.+.++.++... ............ .......++-.+++.|.+..+.+.-+..-+.+|.....+..-.
T Consensus 142 ---fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~-~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 142 ---FVIVDERDRALYLFTVDADTTVISAKVQKIPLG-TTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred ---EEEEehhcceEEEEEEcCCccEEeccceEEecc-ccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccc
Confidence 44455566777777766552 222222211111 2222378899999999999999999999999988875542111
Q ss_pred ---eeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 342 ---ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 342 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
.........-.-..+.++.|.+..+.+++.+..++.+.-.|....
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 111111111223456677777777778877777777776666543
No 393
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0027 Score=59.95 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=101.8
Q ss_pred cCCCEEE-EEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCE-------EEEecCCCcEEEEECCCC-e-EEEE
Q 005254 70 PDDKLLF-SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGL-------LATAGADRKVLVWDVDGG-F-CTHY 139 (706)
Q Consensus 70 ~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-------l~~~~~d~~i~vw~~~~~-~-~~~~ 139 (706)
.+..+|. ++.....++--|++.|+.+.+++.+.. |.-+.+.|+.+. -+.|-.+..|+-||.+-. + .+..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3444444 455566788999999999999998766 888888887642 223456788999998532 1 2222
Q ss_pred eeCC----CCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEE
Q 005254 140 FKGH----KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215 (706)
Q Consensus 140 ~~~~----~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 215 (706)
..+| .....|.+-..+|. ++.|+.+|.|++||-...+....+++-..+|..+..+.+|++++..+ +..+.+.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~---IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi 497 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGY---IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLI 497 (644)
T ss_pred eeccccccccccceeeecCCce---EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEE
Confidence 2222 33456666665543 99999999999999743344456788889999999999999887765 6667777
Q ss_pred eCC
Q 005254 216 DLR 218 (706)
Q Consensus 216 ~~~ 218 (706)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 653
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.34 E-value=0.093 Score=47.38 Aligned_cols=147 Identities=14% Similarity=0.087 Sum_probs=89.4
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 522 (706)
.+.+.+++++++.+.+....++.-.+|-...... ..... ....++...|++++...++...+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~---------~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP---------VRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc---------ceeec--cCCccccccccCCCCEEEEEcCCCceEEEE
Confidence 6888999999985555553333334443333211 11111 334678889999988888777677677764
Q ss_pred -CCCccEEE-EEeec--CCcEEEEEEccCCCEEEEec---CCCcEEEEEcC---CC------ceEEEEeecccCEEEEEE
Q 005254 523 -LPDLVSVV-TFRGH--KRGIWSVEFSPVDQVVITAS---GDKTIKIWSIS---DG------SCLKTFEGHTSSVLRASF 586 (706)
Q Consensus 523 -~~~~~~~~-~~~~~--~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~~~~~i~~~~~ 586 (706)
..++.... ..... ...|+.+.+||||..+|... .++.|.+--+. .+ ..+.........++.+.|
T Consensus 94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W 173 (253)
T PF10647_consen 94 DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW 173 (253)
T ss_pred ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence 33332221 12211 12899999999999888765 35677776543 22 111222223468899999
Q ss_pred EeCCCEEEEEeCCC
Q 005254 587 LTRGAQIVSCGADG 600 (706)
Q Consensus 587 s~~~~~l~~~~~dg 600 (706)
.+++.+++.+...+
T Consensus 174 ~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 174 SDDSTLVVLGRSAG 187 (253)
T ss_pred cCCCEEEEEeCCCC
Confidence 99998777665544
No 395
>PHA02713 hypothetical protein; Provisional
Probab=97.33 E-value=0.024 Score=58.06 Aligned_cols=197 Identities=12% Similarity=0.056 Sum_probs=96.4
Q ss_pred CEEEEEeeCC------CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC-----eEEEEEecCCCCCCC
Q 005254 411 KILIVTGSKD------NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAE 479 (706)
Q Consensus 411 ~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~~~~~ 479 (706)
+.+.+.|+.+ ..+..||..+........-....-......-+++ +.+.|+.++ .+..||.....-
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~-IYviGG~~~~~~~~sve~Ydp~~~~W--- 379 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDT-IYAIGGQNGTNVERTIECYTMGDDKW--- 379 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCE-EEEECCcCCCCCCceEEEEECCCCeE---
Confidence 3446667643 3477888877754332221111111122223444 666777653 477788664321
Q ss_pred cccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC-----------------------cEEEEeCCCccEEEEEeecC
Q 005254 480 QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-----------------------TACVWRLPDLVSVVTFRGHK 536 (706)
Q Consensus 480 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~ 536 (706)
.....+.........+ .-+|++.+.|+.++ .+..||..+.+-...-.-..
T Consensus 380 -----~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~ 452 (557)
T PHA02713 380 -----KMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT 452 (557)
T ss_pred -----EECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc
Confidence 1111111011111111 23677778887653 46678876653322111111
Q ss_pred CcEEEEEEccCCCEEEEecCC------CcEEEEEcCC-C--ceEEEEeecccCEEEEEEEeCCCEEEEEeCCC--CEEEE
Q 005254 537 RGIWSVEFSPVDQVVITASGD------KTIKIWSISD-G--SCLKTFEGHTSSVLRASFLTRGAQIVSCGADG--LVKLW 605 (706)
Q Consensus 537 ~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~-~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~iw 605 (706)
.....-+..-+++..+.|+.+ ..+..||..+ . ..+..+........ .-.-+|+..++|+.+| .+..|
T Consensus 453 ~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~--~~~~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 453 GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH--TILHDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce--eEEECCEEEEEeeecceeehhhc
Confidence 111111122246777777654 2467899876 3 33333432222222 2223778888999888 77788
Q ss_pred ECCCCeEEEEeccCC
Q 005254 606 TVRTGECIATYDKHE 620 (706)
Q Consensus 606 d~~~~~~~~~~~~~~ 620 (706)
|+.+.+-......|.
T Consensus 531 d~~~~~W~~~~~~~~ 545 (557)
T PHA02713 531 NVYTYEWNHICHQHS 545 (557)
T ss_pred CcccccccchhhhcC
Confidence 887776544444443
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.1 Score=46.02 Aligned_cols=162 Identities=14% Similarity=0.177 Sum_probs=111.9
Q ss_pred ecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeecc-CCCeEEEEECCCCCEEEEecCCCcEEEEECCCC
Q 005254 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH-DGPAIGMACHPSGGLLATAGADRKVLVWDVDGG 134 (706)
Q Consensus 56 l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 134 (706)
+.|-...|.++.|+|+.+.|.+....+.-.||=...|+.++++.-. -.....+.+..++++.++--.++.+.++.++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4555667999999999999999988888889988899999987532 234456888889988888778888988888665
Q ss_pred eEEEEe----------eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee---EEEeecc-------cceEEEE
Q 005254 135 FCTHYF----------KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC---VATLDKH-------FSRVTSM 194 (706)
Q Consensus 135 ~~~~~~----------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~-------~~~v~~~ 194 (706)
..+..+ ...+.....++|.|.... ++.+-+-.-+.|+.+..... ......+ -..+.++
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~--l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR--LFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCce--EEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 322211 112566889999998776 66666666677776653221 1111111 2356778
Q ss_pred EEecC-CCEEEEEeCCCEEEEEeCCC
Q 005254 195 AITSD-GSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 195 ~~~~~-~~~l~~~~~dg~i~~w~~~~ 219 (706)
.|.+. +.+|+-+.+++.+.-.|...
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCC
Confidence 88764 55666666777777777654
No 397
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.31 E-value=0.13 Score=47.10 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=81.4
Q ss_pred EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEc-CCC
Q 005254 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI-SDG 568 (706)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~ 568 (706)
.......+..+..++||++++++.......-||--...-...-+.....|..|.|+|++.+.+.+ ..|.|+.=+. ...
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34445678888999999999988766666678754332333333456889999999998776654 8888888772 122
Q ss_pred ceEEE----EeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec---cCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 569 SCLKT----FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 569 ~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
+.-.. +....-.+..++|.+++...++|+. |.+. .....|+--..-+ .-......+.|.++.+-+ +.+.+
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf-~lG~~ 295 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF-VLGQD 295 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEE-EE-ST
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceE-EECCC
Confidence 21111 1112234788999988777776654 5443 3444554333332 335568889887665444 46779
Q ss_pred CcEEEE
Q 005254 642 ALVNLW 647 (706)
Q Consensus 642 g~i~vw 647 (706)
|.|.-|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 988766
No 398
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.27 E-value=0.039 Score=56.34 Aligned_cols=227 Identities=15% Similarity=0.147 Sum_probs=116.7
Q ss_pred CCEEEEEeeCCC------cEEEEeCCCceEEEEEeCCCc-CeEEEEEecCCCeEEEEecCC------CeEEEEEecCCCC
Q 005254 410 GKILIVTGSKDN------SVRLWDSESRCCVGVGTGHMG-AVGAVAFSKKLQNFLVSGSSD------HTIKVWSFDGLSD 476 (706)
Q Consensus 410 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~~ 476 (706)
...+++.|+.++ .+..+|..+++.......... .-.++++..+ . +.++|+.| .++..||.....
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~-~-lYv~GG~~~~~~~l~~ve~YD~~~~~- 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG-K-LYVVGGYDSGSDRLSSVERYDPRTNQ- 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC-E-EEEEccccCCCcccceEEEecCCCCc-
Confidence 344567777663 577888887754443322222 2333444443 3 78888888 345566665442
Q ss_pred CCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCc-----EEEEeCCCccEEEE--EeecCCcEEEEEEccCCC
Q 005254 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT-----ACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQ 549 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~ 549 (706)
+.....+........ ...-+|.+.|+|+.||. +..||..+.+-... +.......-.. .-+|.
T Consensus 361 -------W~~~a~M~~~R~~~~--v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~ 429 (571)
T KOG4441|consen 361 -------WTPVAPMNTKRSDFG--VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGK 429 (571)
T ss_pred -------eeccCCccCccccce--eEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCE
Confidence 111111111111111 11226888899998874 66777665432221 11111111122 22577
Q ss_pred EEEEecCCC------cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCC-----EEEEECCCCeEEEE--e
Q 005254 550 VVITASGDK------TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL-----VKLWTVRTGECIAT--Y 616 (706)
Q Consensus 550 ~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~--~ 616 (706)
..++|+.++ ++..||..+++-...-.........-.-.-++...+.||.|+. |..||..+.+-... .
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 778888654 4678887766433221111111111133346777888888763 77788877654322 2
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCc-----EEEEECCch
Q 005254 617 DKHEDKIWALAVGKKTEMFATGGSDAL-----VNLWHDSTA 652 (706)
Q Consensus 617 ~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~vw~~~~~ 652 (706)
......+....+ +++..++|+.||. |..||..+.
T Consensus 510 ~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 510 TSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 233333333333 6677778887764 455554443
No 399
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.11 E-value=0.12 Score=45.26 Aligned_cols=171 Identities=17% Similarity=0.162 Sum_probs=107.4
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC-CEEEEeeCCCc-EEEEeCCC
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRT-ACVWRLPD 525 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~-i~i~d~~~ 525 (706)
...++++..+++.+.+|++..--. -...-..++++|.- .-++.+-.-|+ ..++|...
T Consensus 42 f~~~dgs~g~a~~~eaGk~v~~~~---------------------lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~ 100 (366)
T COG3490 42 FDARDGSFGAATLSEAGKIVFATA---------------------LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNG 100 (366)
T ss_pred eeccCCceeEEEEccCCceeeeee---------------------cccccCCeecCCCCcceEEEEecCCceEEEECCCC
Confidence 344566766777777776543110 11122356777743 44555555555 56788887
Q ss_pred ccEEEEEeecCCc--EEEEEEccCCCEEEEecCC-----CcEEEEEcCCC-ceEEEEeecccCEEEEEEEeCCCEEEEEe
Q 005254 526 LVSVVTFRGHKRG--IWSVEFSPVDQVVITASGD-----KTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCG 597 (706)
Q Consensus 526 ~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 597 (706)
......+...++. --.=.|||||.+|...-.| |.|-|||...+ +.+.++..|.-..-.+.+.+||+.|+.+.
T Consensus 101 ~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 101 AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 7766655432221 1224799999999876443 67999998754 45677888877778899999999988764
Q ss_pred C------C-C-----------CEEEEECCCCeEEEEec----cCCCcEEEEEEcCCCCEEEEEe
Q 005254 598 A------D-G-----------LVKLWTVRTGECIATYD----KHEDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 598 ~------d-g-----------~i~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~ 639 (706)
. | | .+.+.|..+|+.+.+.. .+...|..++..+||+.++.+-
T Consensus 181 GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 181 GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 3 1 1 23445555666554332 3455688888888887666443
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0026 Score=65.55 Aligned_cols=101 Identities=14% Similarity=0.302 Sum_probs=77.0
Q ss_pred CCCEEEEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEE
Q 005254 505 NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR 583 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 583 (706)
.+..++.|+..|.+...|.... .+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4557888999999998887653 211222224678999999999999999999999999999999999988877776655
Q ss_pred EEE---EeCCCEEEEEeCCCCEEEEEC
Q 005254 584 ASF---LTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 584 ~~~---s~~~~~l~~~~~dg~i~iwd~ 607 (706)
+-+ ..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 544 445667888888775 4543
No 401
>PRK10115 protease 2; Provisional
Probab=97.02 E-value=0.6 Score=49.35 Aligned_cols=192 Identities=11% Similarity=0.094 Sum_probs=106.6
Q ss_pred eeccceEEcCCCCEEEEeeCC------eEEEEEccCCeEEE-eecCCCccEEEEEEccCCCEEEEEecc------CeEEE
Q 005254 20 YGGGPLVVSSDGSFIACACGE------SINIVDLSNASIKS-TIEGGSDTITALALSPDDKLLFSSGHS------REIRV 86 (706)
Q Consensus 20 ~~~~~~~~s~dg~~l~~~~~~------~i~i~d~~~~~~~~-~l~~~~~~i~~l~~s~~~~~l~s~~~d------~~i~i 86 (706)
+.-+.+.+||||++|+++.+. .|++.|+.+++.+. .+.+ .. ..++|++|++.|+....+ ..|..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 334468899999999999763 49999999887432 2222 22 459999999877655332 46888
Q ss_pred EECCCC--eEEEEeeccCCCeE-EEEECCCCCEEEEec---CCCcEEEEECC--CCeEEEEeeCCCCcEEEEEEcCCCCc
Q 005254 87 WDLSTL--KCLRSWKGHDGPAI-GMACHPSGGLLATAG---ADRKVLVWDVD--GGFCTHYFKGHKGVVSSILFHPDTDK 158 (706)
Q Consensus 87 wd~~~~--~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~---~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~ 158 (706)
+++.++ +-...+........ .+..+.|+++++..+ .++.+.+++.. ++.....+.........+. +. ++.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 281 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-QHR 281 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-CCE
Confidence 899887 33334443333333 344455888877643 34678898852 3432222222222222222 22 344
Q ss_pred eEEEEEe--cCCeEEEEECCCCeeEEEeecc-c-ceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 159 SLLFSGS--DDATVRVWDLLAKKCVATLDKH-F-SRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 159 ~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
.++.+-. ....|...++........+-.+ . ..+..+.+. .+.++++...+|.-+++-+
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 3333322 2234444455421122233333 2 367778777 3345566666776555544
No 402
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.95 E-value=0.0038 Score=38.02 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=30.2
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeE
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC 94 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 94 (706)
...|.+++|+|...+||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5544
No 403
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.89 E-value=0.17 Score=51.78 Aligned_cols=228 Identities=16% Similarity=0.124 Sum_probs=113.6
Q ss_pred CCcEEEEEecC------CcEEEEeCCCceeeEeeeCCcc-eEEEeeeeeecCCCEEEEEeeCC-C-----cEEEEeCCCc
Q 005254 365 EEQYLAVATNI------EQVQVYDLSSMSCSYVLAGHSE-IVLCLDTCALSSGKILIVTGSKD-N-----SVRLWDSESR 431 (706)
Q Consensus 365 ~~~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~l~~~~~d-g-----~i~i~d~~~~ 431 (706)
.+.++++|+.. ..+..||..+........-... .-.++ ...++ .+.++|+.| | ++..||..++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~---~~~~~-~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGV---AVLNG-KLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccE---EEECC-EEEEEccccCCCcccceEEEecCCCC
Confidence 34556666555 3577788877643322221111 11122 22233 557888888 3 5778888877
Q ss_pred eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCe-----EEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT-----IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
+......-...+...-...-+|. +.++|+.||. +..||.....-....++. . ..-..-...-+|
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l~g~-iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~--------~--~r~~~gv~~~~g 428 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVLDGK-LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML--------T--RRSGHGVAVLGG 428 (571)
T ss_pred ceeccCCccCccccceeEEECCE-EEEEeccccccccccEEEecCCCCcccccCCCC--------c--ceeeeEEEEECC
Confidence 75543222222221111122333 7888888864 555665543211111110 0 001111223368
Q ss_pred CEEEEeeCCC------cEEEEeCCCccEE--EEEeecCCcEEEEEEccCCCEEEEecCCCc-----EEEEEcCCCceEEE
Q 005254 507 SLVCTGSQDR------TACVWRLPDLVSV--VTFRGHKRGIWSVEFSPVDQVVITASGDKT-----IKIWSISDGSCLKT 573 (706)
Q Consensus 507 ~~l~~~~~dg------~i~i~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~ 573 (706)
++.++|+.++ ++..||..+.+-. ..+........ ++ .-++.+.+.|+.|+. |..||..+.+-...
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 8888888654 4677887665332 22222112222 22 225778888887763 77788776544322
Q ss_pred --EeecccCEEEEEEEeCCCEEEEEeCCC-----CEEEEECCCCe
Q 005254 574 --FEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGE 611 (706)
Q Consensus 574 --~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 611 (706)
+......+- ...-+++..++|+.|| +|..||..+.+
T Consensus 507 ~~m~~~rs~~g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 507 APMTSPRSAVG--VVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccCcccccccc--EEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 221222221 1223566777888776 46667666554
No 404
>PRK13684 Ycf48-like protein; Provisional
Probab=96.84 E-value=0.44 Score=45.25 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=88.5
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEE-EECCCCe-EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRV-WDLSTLK-CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT 137 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~i-wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~ 137 (706)
...+.++.+.|++.+++++ ..|.+.. +| ..++ -......-...+.++.+.++++.++++ ..|.+.+=..+.|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4578999999998777655 4454432 22 1222 111222345788999999999877765 4576543234454432
Q ss_pred EEeeC----CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEee---cccceEEEEEEecCCCEEEEEeCCC
Q 005254 138 HYFKG----HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAGRDK 210 (706)
Q Consensus 138 ~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg 210 (706)
..... ....+..+.+.|++. ++.++.+|.+. .....++.-...+ .-......+.|..+++. +..+..|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~---~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G 323 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE---IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRG 323 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC---EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCce-EEECCCc
Confidence 22211 224578899998654 56666777554 4445555443332 22235777777766654 5566788
Q ss_pred EEEEEeC
Q 005254 211 VVNLWDL 217 (706)
Q Consensus 211 ~i~~w~~ 217 (706)
.|..|+-
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 8887763
No 405
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.83 E-value=0.17 Score=47.84 Aligned_cols=194 Identities=10% Similarity=0.110 Sum_probs=92.7
Q ss_pred CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee---cC----cceEEEEEcCCCCEEEEee--C----CCcEEE
Q 005254 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---HG----KDINSLAVAPNDSLVCTGS--Q----DRTACV 520 (706)
Q Consensus 454 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~i~~~~~s~~~~~l~~~~--~----dg~i~i 520 (706)
+.+++-+-..+.|++.|+......+ +...+... +. .....+-.-|+|++++++- . -|-+.+
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P------~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~l 161 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKP------RLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVL 161 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-------EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEE
T ss_pred CcEEeeeeccCcEEEEECCCCCCCC------ceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEE
Confidence 3344555578999999987543221 12222221 00 1123344457888888742 2 245888
Q ss_pred EeCCCccEEEEEeecCC---cEEEEEEccCCCEEEEecC--------------------CCcEEEEEcCCCceEEEEeec
Q 005254 521 WRLPDLVSVVTFRGHKR---GIWSVEFSPVDQVVITASG--------------------DKTIKIWSISDGSCLKTFEGH 577 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~ 577 (706)
+|-++.+.......... --..+-|.|..+.+++... ..++.+||+.+.+.++++.--
T Consensus 162 lD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 162 LDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp E-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred EcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence 88888777776654322 2356777888888887643 357999999999999998743
Q ss_pred c--cCEEEEEEEeC--CCEEEEEe-CCCCEEEE-ECCCCe----EEEEeccC-----------------CCcEEEEEEcC
Q 005254 578 T--SSVLRASFLTR--GAQIVSCG-ADGLVKLW-TVRTGE----CIATYDKH-----------------EDKIWALAVGK 630 (706)
Q Consensus 578 ~--~~i~~~~~s~~--~~~l~~~~-~dg~i~iw-d~~~~~----~~~~~~~~-----------------~~~v~~~~~s~ 630 (706)
. .....+.|..+ ..+=++++ -..+|..| .-..++ .+..+... ..-|+.|..|.
T Consensus 242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl 321 (461)
T PF05694_consen 242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL 321 (461)
T ss_dssp TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence 3 23556777654 33433322 23334433 334443 22222210 23478999999
Q ss_pred CCCEEEEEe-CCCcEEEEECCchh
Q 005254 631 KTEMFATGG-SDALVNLWHDSTAA 653 (706)
Q Consensus 631 ~~~~l~~~~-~dg~i~vw~~~~~~ 653 (706)
|+++|.... .+|.++.||+++..
T Consensus 322 DDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 322 DDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp TS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CCCEEEEEcccCCcEEEEecCCCC
Confidence 999987655 48999999998864
No 406
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.81 E-value=0.33 Score=42.96 Aligned_cols=182 Identities=13% Similarity=0.107 Sum_probs=114.0
Q ss_pred CeEEEEEecCCCeEEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEE
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 520 (706)
-...+.|..++. ++-+.+.-| .|+.+|+.+++.. ........---..++.. ++++....-.++...+
T Consensus 46 FTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~---------~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 46 FTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVL---------QSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEE---------EEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEE
T ss_pred cCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEE---------EEEECCccccceeEEEE-CCEEEEEEecCCeEEE
Confidence 344577767665 666776666 6777777765311 11111111122334444 3344455567899999
Q ss_pred EeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-----cCEEEEEEEeCCCEEEE
Q 005254 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVS 595 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~ 595 (706)
||..+.+.+.++.- ...=..++ .|++.|+.+.....++.+|..+.+..+.+.... ..++-+.+. +|...|-
T Consensus 115 yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN 190 (264)
T PF05096_consen 115 YDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN 190 (264)
T ss_dssp EETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred EccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence 99999999988864 45556677 467778877777889999998888777765432 346667775 6777777
Q ss_pred EeCCCCEEEEECCCCeEEEEecc------------C---CCcEEEEEEcCCCCEEEEEe
Q 005254 596 CGADGLVKLWTVRTGECIATYDK------------H---EDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 596 ~~~dg~i~iwd~~~~~~~~~~~~------------~---~~~v~~~~~s~~~~~l~~~~ 639 (706)
.-....|...|..+|+.+..+.. + .+-.+.|++.|....|...|
T Consensus 191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 77778899999999999887641 1 24578999988776655444
No 407
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.76 E-value=0.28 Score=41.59 Aligned_cols=104 Identities=10% Similarity=0.074 Sum_probs=71.4
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee-cCcceEEEEEcCCCCEEEEeeCCCcEEEE
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVW 521 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 521 (706)
--..++|+.+.+.+.++-+.+-.|.-||.+-.......+...-....... .....-.+++..+|++.++.-..++|...
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 34568898888878888888999988885433222211111111110000 11123345667789999999999999999
Q ss_pred eCCCccEEEEEeecCCcEEEEEEcc
Q 005254 522 RLPDLVSVVTFRGHKRGIWSVEFSP 546 (706)
Q Consensus 522 d~~~~~~~~~~~~~~~~v~~~~~s~ 546 (706)
|..+++.+..++-....|++++|--
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecC
Confidence 9999999999998899999999974
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.76 E-value=0.45 Score=43.78 Aligned_cols=138 Identities=11% Similarity=0.094 Sum_probs=70.8
Q ss_pred eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEE-CCC
Q 005254 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD-LLA 177 (706)
Q Consensus 99 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd-~~~ 177 (706)
..-.+.+..+.-++||++++++.......-||.....-...-+....+|..|.|.|++. +......|.|++=+ ...
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~---lw~~~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN---LWMLARGGQIQFSDDPDD 217 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS----EEEEETTTEEEEEE-TTE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC---EEEEeCCcEEEEccCCCC
Confidence 34457889999999999999987766666888654333333344678999999999855 44455888888877 222
Q ss_pred CeeEEE--e--ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec----CcceeeeEEeeCCC
Q 005254 178 KKCVAT--L--DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP----TYEMVEAVCAIPPG 241 (706)
Q Consensus 178 ~~~~~~--~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~----~~~~~~~~~~~~~~ 241 (706)
.+.... . ....-.+..++|.+++...++++ .|.+ +...+.++.-...+ .......+.|..+.
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~ 287 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD 287 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCC
Confidence 222111 1 11223478999998876666554 5543 33445554433332 23445666665543
No 409
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.67 E-value=0.0067 Score=36.96 Aligned_cols=35 Identities=6% Similarity=0.208 Sum_probs=30.5
Q ss_pred cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce
Q 005254 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 570 (706)
Q Consensus 535 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 570 (706)
....|..++|+|...+||.+..+|.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999999999999999999998 5544
No 410
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.52 E-value=0.92 Score=44.36 Aligned_cols=71 Identities=15% Similarity=0.272 Sum_probs=51.9
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCC-CcEEEEEEcCCCCceEEEEEecCCeEEEEECCC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHK-GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 177 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 177 (706)
...+|.++.+...|. +-+|+.|| +..||..+++.++.-.... .+|..+.-.-.+. +..|+.+| |.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 457888999998885 55567777 7888998888777655443 6666666665554 88888888 77777654
No 411
>PHA03098 kelch-like protein; Provisional
Probab=96.48 E-value=0.18 Score=52.07 Aligned_cols=185 Identities=11% Similarity=0.076 Sum_probs=86.0
Q ss_pred EEEEEeeCCC------cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC-----CeEEEEEecCCCCCCCc
Q 005254 412 ILIVTGSKDN------SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQ 480 (706)
Q Consensus 412 ~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~ 480 (706)
.+++.|+.++ .+..||..+.+..................-++. +.+.|+.+ ..+..||.....-....
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNR-IYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCE-EEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 3456665432 467788877665432211111111111222334 66677655 34666666543211100
Q ss_pred ccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC------CcEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEE
Q 005254 481 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD------RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 481 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~ 552 (706)
+ ....... .++ ..-++++.+.|+.+ ..+..||..+.+-... +....... + +...++...+
T Consensus 375 ~--------lp~~r~~-~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~-~~~~~~~iyv 442 (534)
T PHA03098 375 P--------LIFPRYN-PCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-C-AIYHDGKIYV 442 (534)
T ss_pred C--------cCcCCcc-ceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-e-EEEECCEEEE
Confidence 0 0001111 112 22366777777732 3578888876533221 11111111 1 2223566667
Q ss_pred EecCCC--------cEEEEEcCCCceEEE--EeecccCEEEEEEEeCCCEEEEEeCC-----CCEEEEECCCCe
Q 005254 553 TASGDK--------TIKIWSISDGSCLKT--FEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGE 611 (706)
Q Consensus 553 ~~~~dg--------~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 611 (706)
.|+.++ .+.+||..+++-... +........ ....+++.++.|+.+ ..+.+||..+.+
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINAS--LCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccce--EEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 776432 388889876543221 111111111 122366777777654 467888887654
No 412
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.46 E-value=0.71 Score=44.63 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=88.5
Q ss_pred ceEEcCCCCEEEEeeCCeEEE-EEccCCeE--EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe-----EE
Q 005254 24 PLVVSSDGSFIACACGESINI-VDLSNASI--KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-----CL 95 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i-~d~~~~~~--~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~-----~~ 95 (706)
.+..++||.+++++..+.+.. || .++. ...-......++++.+.+++.+++++ ..|.+ +|....++ ..
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f 318 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDF 318 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccce
Confidence 467789999999999886543 44 2321 22222345678999999999887765 45554 44444543 22
Q ss_pred EEeec--cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---eCCCCcEEEEEEcCCCCceEEEEEecCCeE
Q 005254 96 RSWKG--HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF---KGHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 96 ~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 170 (706)
..... ....+..+.|.+++..+++| ..|.+.... +.|+.-... ..-......+.|.++++ .+..+.+|.|
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~---g~~~G~~G~i 393 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK---GFVLGNDGVL 393 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc---eEEEeCCcEE
Confidence 22221 22458999999988877665 567665553 455443332 23356788999987655 6667778877
Q ss_pred EEE
Q 005254 171 RVW 173 (706)
Q Consensus 171 ~vw 173 (706)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 654
No 413
>PHA03098 kelch-like protein; Provisional
Probab=96.38 E-value=0.25 Score=51.04 Aligned_cols=184 Identities=10% Similarity=0.088 Sum_probs=88.3
Q ss_pred CCCCEEEEeeC-------CeEEEEEccCCeEEEe--ecCCCccEEEEEEccCCCEEEEEecc-----CeEEEEECCCCeE
Q 005254 29 SDGSFIACACG-------ESINIVDLSNASIKST--IEGGSDTITALALSPDDKLLFSSGHS-----REIRVWDLSTLKC 94 (706)
Q Consensus 29 ~dg~~l~~~~~-------~~i~i~d~~~~~~~~~--l~~~~~~i~~l~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~ 94 (706)
.++.++++|+. +.+..||+.+++-... +........++ .-++++.+.||.+ ..+..||..+.+-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 45556666543 1478899887765321 11111122222 2357777777754 3577888876542
Q ss_pred EE--EeeccCCCeEEEEECCCCCEEEEecCC------CcEEEEECCCCeEEEEeeCCCCc-EEEEEEcCCCCceEEEEEe
Q 005254 95 LR--SWKGHDGPAIGMACHPSGGLLATAGAD------RKVLVWDVDGGFCTHYFKGHKGV-VSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 95 ~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~ 165 (706)
.. .+....... ++ ..-+++..+.||.+ ..+..||+.+++-...-...... -.+++.. + +. +++.|+
T Consensus 371 ~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~-~~-iyv~GG 445 (534)
T PHA03098 371 REEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH-D-GK-IYVIGG 445 (534)
T ss_pred eeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE-C-CE-EEEECC
Confidence 21 121111111 12 22356666777632 45888998876533221101111 1122222 2 23 355554
Q ss_pred cC--------CeEEEEECCCCeeEEE--eecccceEEEEEEecCCCEEEEEeCC-----CEEEEEeCCCCc
Q 005254 166 DD--------ATVRVWDLLAKKCVAT--LDKHFSRVTSMAITSDGSTLISAGRD-----KVVNLWDLRDYS 221 (706)
Q Consensus 166 ~d--------g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~~~~ 221 (706)
.+ ..+.+||..+++-... +....... +++ ..+++.++.||.+ +.+.+||..+.+
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eEE-EECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 32 2388888877653321 11111111 121 2266666676654 467788877654
No 414
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.24 E-value=0.63 Score=39.53 Aligned_cols=110 Identities=16% Similarity=0.298 Sum_probs=68.2
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEcc--CCeEEEeecCCCccEEEEEEccCCCEEEEEec---cC---eEEEE-ECCC---
Q 005254 24 PLVVSSDGSFIACACGESINIVDLS--NASIKSTIEGGSDTITALALSPDDKLLFSSGH---SR---EIRVW-DLST--- 91 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~--~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~---d~---~i~iw-d~~~--- 91 (706)
++.-++.+.+++++.+..|.+|++. ..+.+..+.. -+.|..++++..|+||++--. .. .+++| ||..
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 3444443444455667799999987 3345566653 478999999999999999733 22 56664 3321
Q ss_pred -CeEEE-Eeec---------------------cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe
Q 005254 92 -LKCLR-SWKG---------------------HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF 135 (706)
Q Consensus 92 -~~~~~-~~~~---------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 135 (706)
..+++ ++-| -+.++.+++--|-...|++|+ ++.+.+|.+..+.
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 12222 1112 234667788888555566665 4678999876443
No 415
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.21 E-value=0.32 Score=49.83 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=99.0
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCeEEE------ee--c--------------CCCccEEEEEEcc--CCCEEEEEec
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNASIKS------TI--E--------------GGSDTITALALSP--DDKLLFSSGH 80 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~------~l--~--------------~~~~~i~~l~~s~--~~~~l~s~~~ 80 (706)
.+++. +.+++++.++.|.||++....... .+ . .....|+.|.... +...|+.|.+
T Consensus 44 talsq-~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~D 122 (717)
T PF08728_consen 44 TALSQ-RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTD 122 (717)
T ss_pred eEEec-CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEec
Confidence 34444 899999999999999986433211 11 0 0123466666554 4478889999
Q ss_pred cCeEEEEECCC-------C----e---------EEEEeeccCCCeEEEEEC--CCCCEEEEecCCCcEEEEECCCC--eE
Q 005254 81 SREIRVWDLST-------L----K---------CLRSWKGHDGPAIGMACH--PSGGLLATAGADRKVLVWDVDGG--FC 136 (706)
Q Consensus 81 d~~i~iwd~~~-------~----~---------~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~d~~i~vw~~~~~--~~ 136 (706)
||.|.+|.+++ . + +...+. -......+++. ...++||+++....|.||-.... +.
T Consensus 123 dG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~ 201 (717)
T PF08728_consen 123 DGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERF 201 (717)
T ss_pred CCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccc
Confidence 99999997631 0 0 111222 34578889998 78889999888888888765432 21
Q ss_pred EEE-eeCCCCcEEEEEEcCCCC---c-eEEEEEecCCeEEEEEC
Q 005254 137 THY-FKGHKGVVSSILFHPDTD---K-SLLFSGSDDATVRVWDL 175 (706)
Q Consensus 137 ~~~-~~~~~~~v~~~~~~~~~~---~-~~l~~~~~dg~i~vwd~ 175 (706)
... -..|...|.+++|.++.. + ..+++++-.|.+.+|++
T Consensus 202 ~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 202 YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 111 113677899999988652 1 36888899999999887
No 416
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.097 Score=55.04 Aligned_cols=143 Identities=10% Similarity=0.069 Sum_probs=93.7
Q ss_pred CcceEEEEEcCCCCEEEEeeC--CCcEEEEeCCCccEEE-----EEeec------CCcEEEEEEccCCC-EEEEecCCCc
Q 005254 494 GKDINSLAVAPNDSLVCTGSQ--DRTACVWRLPDLVSVV-----TFRGH------KRGIWSVEFSPVDQ-VVITASGDKT 559 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~-----~~~~~------~~~v~~~~~s~~~~-~l~~~~~dg~ 559 (706)
.-++..+...+|+...++... +-.|..||+++..... -+..| ..-..++.|.|.-. ..+....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 345667777888766655433 3368899987643221 11212 22346778888543 3566678888
Q ss_pred EEEEEcCCCce-EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc----CCCcEEEEEEcCCCCE
Q 005254 560 IKIWSISDGSC-LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----HEDKIWALAVGKKTEM 634 (706)
Q Consensus 560 i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~ 634 (706)
|++..+.-... ...+. -....++++|+|.|+.++.|-..|++.-|.. +++....+.. ....|.++.|-....+
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeE
Confidence 99887753322 22222 4457899999999999999999999999975 4554444432 2467899999877777
Q ss_pred EEEE
Q 005254 635 FATG 638 (706)
Q Consensus 635 l~~~ 638 (706)
+++-
T Consensus 258 lvvy 261 (1405)
T KOG3630|consen 258 LVVY 261 (1405)
T ss_pred EEEe
Confidence 7653
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.13 E-value=0.5 Score=46.35 Aligned_cols=115 Identities=20% Similarity=0.324 Sum_probs=74.6
Q ss_pred ccEEEEEEccCC----CEEEEEeccCeEEEEECC-----CCeEEEEeecc---CCC--eEEEEECCCCCEEEEecCCCcE
Q 005254 61 DTITALALSPDD----KLLFSSGHSREIRVWDLS-----TLKCLRSWKGH---DGP--AIGMACHPSGGLLATAGADRKV 126 (706)
Q Consensus 61 ~~i~~l~~s~~~----~~l~s~~~d~~i~iwd~~-----~~~~~~~~~~~---~~~--v~~~~~s~~~~~l~~~~~d~~i 126 (706)
.-|..+.|+|-+ ..|.+......|.||.+. +.+.+..-..+ .-+ -..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 458899999953 344445667799999885 23333322211 111 2357899999988887655544
Q ss_pred EEEECC--CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC
Q 005254 127 LVWDVD--GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 177 (706)
Q Consensus 127 ~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 177 (706)
.+.++. +.+....+ ...+.|.|.+|.+||++.+++.|+. =.-++||-..
T Consensus 137 V~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSs-LHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSS-LHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCe-EEEEEecCch
Confidence 556653 33444444 3678899999999999877777763 3467898543
No 418
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=96.11 E-value=2 Score=44.04 Aligned_cols=252 Identities=11% Similarity=0.145 Sum_probs=121.7
Q ss_pred eCCCCcEEEEEecCCcEEEEeCCCcee--eEeeeCC-cceEEEeeeeeecCCCEEEEEeeCCC--cEEEEeCCCceEEEE
Q 005254 362 LGEEEQYLAVATNIEQVQVYDLSSMSC--SYVLAGH-SEIVLCLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGV 436 (706)
Q Consensus 362 ~~~~~~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~-~~~i~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~ 436 (706)
...+...++.+..+|.+....+..... ....-+. .....++. ...++..+++.|+.-| .+..|....-+.+..
T Consensus 218 ~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~--~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~ 295 (504)
T PF10433_consen 218 YDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLT--YLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDS 295 (504)
T ss_dssp SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEE--EESTT--EEEEEESSS-EEEEEEESESEEEEEE
T ss_pred ecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEE--EEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEe
Confidence 445778899999999999988765442 1111112 33334443 4444433466666554 455555444444444
Q ss_pred EeCCCcCeEEEEEecC---CC-------eEEEEec--CCCeEEEEEecCCCCCCCcccccceeEEEeec--CcceEEEEE
Q 005254 437 GTGHMGAVGAVAFSKK---LQ-------NFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH--GKDINSLAV 502 (706)
Q Consensus 437 ~~~~~~~v~~~~~~~~---~~-------~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~ 502 (706)
+. .-++|..+++.+. +. .++++++ .+|.+++..-.-.. . ......... -..+..+..
T Consensus 296 ~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~-------~-~~~~~~~~l~~v~~iW~l~~ 366 (504)
T PF10433_consen 296 LP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGI-------E-GLELASSELPGVTGIWTLKL 366 (504)
T ss_dssp E-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEE-------E---EEEEEEESTEEEEEEE-S
T ss_pred cc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCc-------e-eeeeeccCCCCceEEEEeee
Confidence 43 4578888887532 22 2344433 57888887542110 0 001111111 122333333
Q ss_pred cC-CCCEEEEeeCCCcEEEEeCC---CccEEEEEe--e---cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 503 AP-NDSLVCTGSQDRTACVWRLP---DLVSVVTFR--G---HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 503 s~-~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~--~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
.. +..+|+....+ .-+++.+. ..+.+.... + ....+.+-.+. +..++=....+ |++.+...++....
T Consensus 367 ~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~-i~l~~~~~~~~~~~ 442 (504)
T PF10433_consen 367 SSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKG-IRLIDLEDGKLTQE 442 (504)
T ss_dssp SSSSBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSE-EEEEESSSTSEEEE
T ss_pred cCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCe-EEEEECCCCeEEEE
Confidence 22 24566666654 44555553 233332221 1 11122222222 44444444444 88888887777776
Q ss_pred Eeeccc-CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec-----cCCCcEEEEEEcC
Q 005254 574 FEGHTS-SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-----KHEDKIWALAVGK 630 (706)
Q Consensus 574 ~~~~~~-~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~ 630 (706)
+....+ .|.+.+. ++.+++.+..++.+..+.+.......... .....|.|+...|
T Consensus 443 w~~~~~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 443 WKPPAGSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EE-TTS---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EeCCCCCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 654333 3433333 45678777788999999988776643332 1467888888765
No 419
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.10 E-value=0.0033 Score=63.37 Aligned_cols=170 Identities=17% Similarity=0.282 Sum_probs=100.0
Q ss_pred eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC---CCCEEEEeeC
Q 005254 438 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP---NDSLVCTGSQ 514 (706)
Q Consensus 438 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~ 514 (706)
++..+.+..+.|....-..+. ..-|.+.+|++.-......... ..........++.-+.|.| +.-++..+..
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l---~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQL---EVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccce---EEeecCcCCCCcceeeecccccccceeeeccC
Confidence 455667777776543221222 3346788999875322211111 1222223334444455544 6678888889
Q ss_pred CCcEEEEeCCCccEEEEEeecCCcEEEEE-----------EccCCCEEEEecCCCcEEEEEcC-----CCceEEEEeecc
Q 005254 515 DRTACVWRLPDLVSVVTFRGHKRGIWSVE-----------FSPVDQVVITASGDKTIKIWSIS-----DGSCLKTFEGHT 578 (706)
Q Consensus 515 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~-----------~s~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~ 578 (706)
++++++....+... ..+++|...++.++ .||||..++.++.||.++.|.+. .-.|+...+.|.
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 99999877655433 34455776665543 68999999999999988888653 335666777776
Q ss_pred c-CEEEEEEEeCC---------CEEEEEeC-CCCEEEEECCCCeEE
Q 005254 579 S-SVLRASFLTRG---------AQIVSCGA-DGLVKLWTVRTGECI 613 (706)
Q Consensus 579 ~-~i~~~~~s~~~---------~~l~~~~~-dg~i~iwd~~~~~~~ 613 (706)
+ +-.|..+..+. .++++++. +..+++|.-...+|+
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3 33232233221 13444443 457899988777766
No 420
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.06 E-value=1.6 Score=42.43 Aligned_cols=274 Identities=11% Similarity=0.088 Sum_probs=146.1
Q ss_pred CCCcEEEEEecCCcEEEEeCCCcee----eEeeeCCcceEEEeeeeee-cCCCEEEEEeeCCCcEEEEeCCC--ce----
Q 005254 364 EEEQYLAVATNIEQVQVYDLSSMSC----SYVLAGHSEIVLCLDTCAL-SSGKILIVTGSKDNSVRLWDSES--RC---- 432 (706)
Q Consensus 364 ~~~~~l~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~--~~---- 432 (706)
.+...+++|+..|.+++|+...... ...-..-..+|..+..-.+ +....+.++--.-..+.+|.+.. +.
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 4667899999999999999865331 2222234457777664332 22222122334556677776521 11
Q ss_pred ---EEEEEeCCCc--CeEEEEEec----CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 433 ---CVGVGTGHMG--AVGAVAFSK----KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 433 ---~~~~~~~~~~--~v~~~~~~~----~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
.+.....|.- ....+++-| .++.++.+-+.||.+.+|+-+.. ........---...+.+.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-----------~f~~~lp~~llPgPl~Y~ 183 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-----------AFSRFLPDFLLPGPLCYC 183 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-----------EEEEEcCCCCCCcCeEEe
Confidence 1222222222 222333333 33568999999999999987643 111222222334567888
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCc--------------------cE---EEEEeecCCcEEE---EEEccCCCEEEEecCC
Q 005254 504 PNDSLVCTGSQDRTACVWRLPDL--------------------VS---VVTFRGHKRGIWS---VEFSPVDQVVITASGD 557 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~~--------------------~~---~~~~~~~~~~v~~---~~~s~~~~~l~~~~~d 557 (706)
+.-..+++++.+..+.-|....- +. ..++. -...+.. +.++.....+++-++
T Consensus 184 ~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLge- 261 (418)
T PF14727_consen 184 PRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGE- 261 (418)
T ss_pred ecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEec-
Confidence 88888898888888888865211 00 00111 1122222 333333333444333
Q ss_pred CcEEEEEcCCCceEEEEeecccCEEEEEEEe----CC---CEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEE--
Q 005254 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLT----RG---AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV-- 628 (706)
Q Consensus 558 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~----~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-- 628 (706)
.++.+.+. +|......+-.-.+.....|.. ++ ..++.++.++.+.||. ..+.+...+....+| ++..
T Consensus 262 r~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~ 337 (418)
T PF14727_consen 262 RSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVAN 337 (418)
T ss_pred ceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCE-EEEecc
Confidence 34666664 4544333321112222222222 22 2488899999999996 455555554433343 3333
Q ss_pred -cCCCCEEEEEeCCCcEEEEECCchhH
Q 005254 629 -GKKTEMFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 629 -s~~~~~l~~~~~dg~i~vw~~~~~~~ 654 (706)
..-...|++-+.+|.+.+-=+.+...
T Consensus 338 ~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 338 FNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred cCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 23355788899999998876666543
No 421
>PHA02790 Kelch-like protein; Provisional
Probab=95.99 E-value=0.74 Score=46.53 Aligned_cols=183 Identities=8% Similarity=0.014 Sum_probs=84.7
Q ss_pred CEEEEEeeCCC-----cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC--CeEEEEEecCCCCCCCcccc
Q 005254 411 KILIVTGSKDN-----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMN 483 (706)
Q Consensus 411 ~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~ 483 (706)
+.++++|+.++ .+..||..+++..................-++. +.+.|+.+ ..+..|+.....
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~-iYviGG~~~~~sve~ydp~~n~-------- 342 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNK-LYVVGGLPNPTSVERWFHGDAA-------- 342 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCE-EEEECCcCCCCceEEEECCCCe--------
Confidence 44466676543 466788877655443222211111112223444 66667653 346667654321
Q ss_pred cceeEEEeecCcceEEEEEcCCCCEEEEeeCCC---cEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecCCC
Q 005254 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR---TACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGDK 558 (706)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg 558 (706)
+.....+..... ......-+|+..+.|+.++ .+..||..+.+-... +....... ++ ..-+++..+.|+
T Consensus 343 W~~~~~l~~~r~--~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG--- 415 (480)
T PHA02790 343 WVNMPSLLKPRC--NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR--- 415 (480)
T ss_pred EEECCCCCCCCc--ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC---
Confidence 111111110111 1112233677778887654 467788765533221 11111111 12 223466666663
Q ss_pred cEEEEEcCCCceE--EEEeecccCEEEEEEEeCCCEEEEEeCC-----CCEEEEECCCCe
Q 005254 559 TIKIWSISDGSCL--KTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGE 611 (706)
Q Consensus 559 ~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 611 (706)
.+.+||..+++-. ..+....... -+..-+|+..+.||.+ ..+..||..+++
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r~~~--~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPRDNP--ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCcccc--EEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 4778888765432 2222111112 2223467777777754 246666666544
No 422
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.98 E-value=0.34 Score=46.89 Aligned_cols=144 Identities=12% Similarity=0.090 Sum_probs=82.4
Q ss_pred cceEEEEEcCCCCEEEEee-----------CCC-cEEEEeCCC--cc--EEEEEeecCCcEEEEEEccCCCEEEEecCCC
Q 005254 495 KDINSLAVAPNDSLVCTGS-----------QDR-TACVWRLPD--LV--SVVTFRGHKRGIWSVEFSPVDQVVITASGDK 558 (706)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 558 (706)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........+++.+++ |+++....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3457899999999887753 223 677776543 22 233444344456889999988 44444444
Q ss_pred cEEEEEcCCC-----c--eE-EEEee----cccCEEEEEEEeCCCEEEEEeCC-------------------CCEEEEEC
Q 005254 559 TIKIWSISDG-----S--CL-KTFEG----HTSSVLRASFLTRGAQIVSCGAD-------------------GLVKLWTV 607 (706)
Q Consensus 559 ~i~iwd~~~~-----~--~~-~~~~~----~~~~i~~~~~s~~~~~l~~~~~d-------------------g~i~iwd~ 607 (706)
..++.|.... + .+ ..+.. +......+.|.|||.+.++.+.. |.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334344211 1 11 12222 12346789999999876655421 44556666
Q ss_pred CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 608 RTGECIATYDKHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 608 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
.+++......++ .....++|+++|+++++-..+
T Consensus 172 dg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 555432222232 335689999999887764433
No 423
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=1.1 Score=39.76 Aligned_cols=266 Identities=12% Similarity=0.053 Sum_probs=149.2
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc---eEEEEEeCCC
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGHM 441 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~ 441 (706)
.++++..+..+..++++|+.+......+..-.- ...+.++.-.++. ..++..+.-+.+.|+.+. +.........
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--~gyaygv~vsGn~-aYVadlddgfLivdvsdpssP~lagrya~~~ 171 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT--DGYAYGVYVSGNY-AYVADLDDGFLIVDVSDPSSPQLAGRYALPG 171 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccC--CceEEEEEecCCE-EEEeeccCcEEEEECCCCCCceeeeeeccCC
Confidence 456788888889999999987665433322111 0222224445666 555665555666776543 4444555555
Q ss_pred cCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEE
Q 005254 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 521 (706)
..-..++.+.+ +...+..|+-+.+-|+...... ........+..+.++..+++..+++... --+.+-
T Consensus 172 ~d~~~v~ISGn---~AYvA~~d~GL~ivDVSnp~sP--------vli~~~n~g~g~~sv~vsdnr~y~vvy~--egvliv 238 (370)
T COG5276 172 GDTHDVAISGN---YAYVAWRDGGLTIVDVSNPHSP--------VLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIV 238 (370)
T ss_pred CCceeEEEecC---eEEEEEeCCCeEEEEccCCCCC--------eEEEEEecCCceEEEEecCCeeEEEEcc--cceEEE
Confidence 66667777765 6677778899999999865311 1111122233677888887766666553 337777
Q ss_pred eCCCccEEEEEee--cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce---EEEEeecccCEEEEEEEeCCCEEEEE
Q 005254 522 RLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC---LKTFEGHTSSVLRASFLTRGAQIVSC 596 (706)
Q Consensus 522 d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~ 596 (706)
|..+.+....+.. ...++.--.+.-.+++...+..+.-+.+-|+++..- ...+......-..+.. -+.++..+
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yia 316 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIA 316 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEec
Confidence 7766654333332 222221112333467777777777777778764321 1122111111222222 34455555
Q ss_pred eCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 597 GADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 597 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
..+ ...+-+....+......+....+.+.+.+-+.+.+-+...++-+.+|+.
T Consensus 317 dkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 317 DKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred cCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 444 4555555444433333333444555555556677888888999999985
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.91 E-value=0.55 Score=45.50 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=57.2
Q ss_pred ccceEEcCCCCEEEEee-------------CCeEEEEEccC--CeE--EEeecCCCccEEEEEEccCCCEEEEEeccCeE
Q 005254 22 GGPLVVSSDGSFIACAC-------------GESINIVDLSN--ASI--KSTIEGGSDTITALALSPDDKLLFSSGHSREI 84 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~-------------~~~i~i~d~~~--~~~--~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i 84 (706)
..+|+|.++|+++++-. ++.|.+++-.+ |+. ...+...-.....+++.++| +++ +... .|
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~-~i 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP-DI 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-eE
Confidence 44799999999887742 23787776543 332 23333333456889999999 444 4444 44
Q ss_pred EEE-ECCC-----Ce--EE-EEeec----cCCCeEEEEECCCCCEEEEec
Q 005254 85 RVW-DLST-----LK--CL-RSWKG----HDGPAIGMACHPSGGLLATAG 121 (706)
Q Consensus 85 ~iw-d~~~-----~~--~~-~~~~~----~~~~v~~~~~s~~~~~l~~~~ 121 (706)
..+ |... ++ .+ ..+.. +......++|.|||.+.++.+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 434 5421 11 12 22322 234577899999998766544
No 425
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.32 Score=45.73 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=97.4
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCe---EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEE----
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNAS---IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR---- 96 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~---~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~---- 96 (706)
.+-|....+.|.+...+...=|-.+... ++..-....++|.++.||+|.+.||+--.+..|.+.+....+...
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 4555555555554444444434333221 222222346799999999999999999999999999984433222
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC-eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
+-+..+..|....|+.+ .-+|.....| +-+|.+... +.+...+.|+..|....|.++....+++++-..+++.=+.+
T Consensus 107 ~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~ 184 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHF 184 (657)
T ss_pred HhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEE
Confidence 22334556889999877 4566665545 777776543 34555667889999999999877655555545555544444
Q ss_pred CCCe
Q 005254 176 LAKK 179 (706)
Q Consensus 176 ~~~~ 179 (706)
.++.
T Consensus 185 ~~~~ 188 (657)
T KOG2377|consen 185 RAGT 188 (657)
T ss_pred eece
Confidence 4443
No 426
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.82 Score=38.21 Aligned_cols=171 Identities=8% Similarity=0.008 Sum_probs=91.0
Q ss_pred EEEEEeeCC--CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE
Q 005254 412 ILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (706)
Q Consensus 412 ~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 489 (706)
.++.+.+.- ..|+.||+.+++.+....-....+..=-...-+..+-.-.-.+|.-..+|.+..+. ..
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~----------lg- 125 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE----------LG- 125 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh----------hc-
Confidence 445555443 36999999999888765433222222222222333444455667777777664321 11
Q ss_pred EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee--cC---CcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--HK---RGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
.++.+-..=....|++-|..++....++.-|.++.....++.- .. ..+..+.|- ||...|-.-.+..|...|
T Consensus 126 --~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 126 --RFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID 202 (262)
T ss_pred --ccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence 1111111122334565676665556677777666544443332 11 223344444 466666555566677777
Q ss_pred cCCCceEEEEe------------ecccCEEEEEEEeCCCE-EEEE
Q 005254 565 ISDGSCLKTFE------------GHTSSVLRASFLTRGAQ-IVSC 596 (706)
Q Consensus 565 ~~~~~~~~~~~------------~~~~~i~~~~~s~~~~~-l~~~ 596 (706)
..+|+.+..+. .|..-.+.+++.|++.. +++|
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 77777765544 23345677888887744 4444
No 427
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.19 Score=53.00 Aligned_cols=145 Identities=15% Similarity=0.085 Sum_probs=95.1
Q ss_pred CccEEEEEEccCCCEEEEEe--ccCeEEEEECCCCeEEE-----Eeec------cCCCeEEEEECCCCC-EEEEecCCCc
Q 005254 60 SDTITALALSPDDKLLFSSG--HSREIRVWDLSTLKCLR-----SWKG------HDGPAIGMACHPSGG-LLATAGADRK 125 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~-----~~~~------~~~~v~~~~~s~~~~-~l~~~~~d~~ 125 (706)
.-+|..+...+|+...++.. .+-.|..+|+++...-. -|.. ......++.|.|.-. ..|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34778888888887766543 33478899997543211 1111 224456788888543 3455667888
Q ss_pred EEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec----ccceEEEEEEecCCC
Q 005254 126 VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK----HFSRVTSMAITSDGS 201 (706)
Q Consensus 126 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~ 201 (706)
|.+..+........--.-....++++|+|.|++ ++.|-..|++.-|-. +.+....+.. ....|.+++|.....
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQ--l~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQ--LFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccce--eeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence 888877543322221235677899999999988 999999999998875 3333333321 247899999988777
Q ss_pred EEEEEe
Q 005254 202 TLISAG 207 (706)
Q Consensus 202 ~l~~~~ 207 (706)
++++-+
T Consensus 257 flvvy~ 262 (1405)
T KOG3630|consen 257 FLVVYG 262 (1405)
T ss_pred EEEEec
Confidence 666543
No 428
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.73 E-value=0.4 Score=48.64 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=77.0
Q ss_pred EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEe-ecccCEEEEEEE--eCCCEEEEEeCCCCEEEEECC
Q 005254 532 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASFL--TRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 532 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s--~~~~~l~~~~~dg~i~iwd~~ 608 (706)
+......++-+.-|.-++..++-+...++.|||.+.+....+-. ...+.|..+.|. |+|+.+++.|-.+.|.++.-.
T Consensus 25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 33333445555556655555555555679999998887543322 246789999885 688999999999999988532
Q ss_pred ---------CCeEEEEec--cCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 609 ---------TGECIATYD--KHE-DKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 609 ---------~~~~~~~~~--~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
+..++..+. .|. .+|.+..|.++|.+++.+| +.+.|++-
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 223444443 343 5789999999997666544 55788764
No 429
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.65 E-value=3.6 Score=43.44 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=52.9
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC-eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 179 (706)
....|..+.++|+|.+||..|..| |.|-.+... -.-..+.+-...|.|-.+.-+.. ++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~---~~~---------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDER---FFT---------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechh---hcc----------------
Confidence 345788999999999999998755 555554321 10111222222333322221111 110
Q ss_pred eEEEeecccceEEEEEEecC---CCEEEEEeCCCEEEEEeCCCC
Q 005254 180 CVATLDKHFSRVTSMAITSD---GSTLISAGRDKVVNLWDLRDY 220 (706)
Q Consensus 180 ~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~w~~~~~ 220 (706)
..+...|..+.|+|. +..|++-+.|+.+++||+...
T Consensus 143 -----~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 -----SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred -----CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 122345666677764 467777788888888887643
No 430
>PHA02790 Kelch-like protein; Provisional
Probab=95.50 E-value=1 Score=45.57 Aligned_cols=142 Identities=9% Similarity=0.033 Sum_probs=71.2
Q ss_pred CCCCEEEEeeCC--CcEEEEeCCCccEEE--EEeecCCcEEEEEEccCCCEEEEecCCC---cEEEEEcCCCceEEEEee
Q 005254 504 PNDSLVCTGSQD--RTACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEG 576 (706)
Q Consensus 504 ~~~~~l~~~~~d--g~i~i~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~ 576 (706)
-++.+.++|+.+ ..+..||..+++-.. .+.......... .-+++..+.|+.++ .+..||..+.+-...-..
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 467777888754 357778865543221 111111111112 23577777777653 467888765533221110
Q ss_pred cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEE--EEeccCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEEC
Q 005254 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI--ATYDKHEDKIWALAVGKKTEMFATGGSD-----ALVNLWHD 649 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~ 649 (706)
....-...+..-+|+..+.| |.+.+||..+++-. ..+.........+.+ +++..+.||.+ ..+..||.
T Consensus 395 ~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 395 YYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred CCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEEC
Confidence 00111112223466555665 45788998776533 222221222222333 77777777754 34667776
Q ss_pred Cch
Q 005254 650 STA 652 (706)
Q Consensus 650 ~~~ 652 (706)
.++
T Consensus 470 ~~~ 472 (480)
T PHA02790 470 RTY 472 (480)
T ss_pred CCC
Confidence 654
No 431
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=95.48 E-value=2.2 Score=39.89 Aligned_cols=238 Identities=11% Similarity=0.072 Sum_probs=117.4
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE-------------
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC------------- 433 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------- 433 (706)
.+++.|+++|...+. .........--.+...|.++. ..+..+.+++.++....++.+++..-..
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl~~~~~v~q~~--v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEKLIGRRSVTQIW--VLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEEecCcCceEEEE--EEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 588899987765555 543211112223455788888 7777787777777777799998742221
Q ss_pred --EEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccccee-EEEeecCcceEEEEEcCC--CCE
Q 005254 434 --VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK-AVVAAHGKDINSLAVAPN--DSL 508 (706)
Q Consensus 434 --~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~--~~~ 508 (706)
....-.+........+........+++....+|.++.......... ..+.. ........++..+..+++ ...
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~---~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFK---LFKSKFLFPLISPVPVFVELVSSSFERPG 167 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhh---hhcccccccCCCCccceEeeecccccceE
Confidence 0111123333333333333223445555667777775543211000 00000 000011223333444433 567
Q ss_pred EEEeeCCCcEEEEeCCC--ccEEE-----EEeecC-CcEEEEEEccCCCEEEEecCCCcEEEEEcCCC-ceE--EEEeec
Q 005254 509 VCTGSQDRTACVWRLPD--LVSVV-----TFRGHK-RGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCL--KTFEGH 577 (706)
Q Consensus 509 l~~~~~dg~i~i~d~~~--~~~~~-----~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~~ 577 (706)
+++|+..+...++++.. ..... ...... .++.... -+++.+|++ ..+ ....-|.. | +.. ..+. -
T Consensus 168 lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Llc-~~~-~~v~Vn~~-G~~~~r~~~l~-w 242 (302)
T smart00036 168 ICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLLC-YDE-FGVFVNLY-GKRRSRNPILH-W 242 (302)
T ss_pred EEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEEE-ECc-EEEEEeCC-CCccccceEEE-c
Confidence 77777653344555432 11000 011111 3333333 334555544 333 34444543 3 221 1222 2
Q ss_pred ccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc
Q 005254 578 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK 618 (706)
Q Consensus 578 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 618 (706)
...+.++++. ..||+.-+. ..|.|+++.+++.++.+..
T Consensus 243 ~~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 243 EFMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CCcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 3445566666 358777765 4599999999999888854
No 432
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.44 E-value=4.3 Score=42.92 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=52.6
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCC-CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLST-LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH 138 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~ 138 (706)
...|..|.++|+|++||..|..|. .|-.+.. ...-..+.+-...|.|=. +.+... ..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt-------------------~~v~~~--~~ 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRT-------------------VPVDER--FF 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEE-------------------EEechh--hc
Confidence 458899999999999999888754 4433321 111112222222222221 222111 00
Q ss_pred EeeCCCCcEEEEEEcCCC-CceEEEEEecCCeEEEEECCC
Q 005254 139 YFKGHKGVVSSILFHPDT-DKSLLFSGSDDATVRVWDLLA 177 (706)
Q Consensus 139 ~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~ 177 (706)
...+...|..+.|+|.+ ....|+.-..|+++++||+..
T Consensus 142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 11245567788888864 123367777888888888854
No 433
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.41 E-value=4.6 Score=43.09 Aligned_cols=174 Identities=16% Similarity=0.124 Sum_probs=95.8
Q ss_pred cEEEEeCCCceEEEEEeCCC----cCeEEEEEecCCCe-EEEEec-----------CCCeEEEEEecCCCCCCCcccccc
Q 005254 422 SVRLWDSESRCCVGVGTGHM----GAVGAVAFSKKLQN-FLVSGS-----------SDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~~~----~~v~~~~~~~~~~~-~l~~~~-----------~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
.|+++|..+++.+..+.... -.+.++.|+..... +++++. .+|.++.|++-....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~--------- 924 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD--------- 924 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc---------
Confidence 47777777776655544222 24555666654433 333332 345577777654321
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee--cCCcEEEEEEccCCCEEEEecCCCcEEEE
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIW 563 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 563 (706)
....+....-+-.-.++.|-..++.+| ....+++||+...++++.... -...|+.+++- +.++++|...-.+..+
T Consensus 925 ~lellh~T~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~ 1001 (1205)
T KOG1898|consen 925 KLELLHKTEIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFV 1001 (1205)
T ss_pred eeeeeeccCCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEE
Confidence 112222122222335666766666555 356899999987766554332 34567777765 6678887765555554
Q ss_pred EcCC-CceEEEEeec--ccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 564 SISD-GSCLKTFEGH--TSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 564 d~~~-~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
..+. .+.+..+... ...++++.+- |...+|.+..=|.+.+-.+.
T Consensus 1002 ~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1002 RYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 4332 3334444322 1245555554 44577878777887777653
No 434
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.28 E-value=1.1 Score=45.57 Aligned_cols=118 Identities=8% Similarity=0.140 Sum_probs=77.5
Q ss_pred eeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC
Q 005254 98 WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176 (706)
Q Consensus 98 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 176 (706)
+...-....-+.-|.-++.-++-+....+.|||...+.....-. ...+.|.++.|....+...+++.+..+.|.++.-.
T Consensus 25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 33333455556666666655555556789999999887544322 35788999999766555568888888999998431
Q ss_pred -----C----CeeEEEe--eccc-ceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 177 -----A----KKCVATL--DKHF-SRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 177 -----~----~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
. ...++.+ ..|. .+|....|.++|.+++.+ ++.+.+++-
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 1222222 2333 578899999999655444 467888874
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.26 E-value=0.92 Score=45.97 Aligned_cols=184 Identities=11% Similarity=0.094 Sum_probs=95.5
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEE
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 500 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 500 (706)
-.|+|++.. |+.+.......+.+-.+.|+.+. -|++...+|++.+|++........ ..-.......|..+
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~-------svg~e~~~~~I~ec 133 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESN-------SVGFESQMSDIVEC 133 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchhhhccc-------ccccccccCceeEE
Confidence 357777764 45555544455588889999885 488899999999999875432110 00112223335555
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee---cCCcEEEEEEccCCC---EEEEec-CCCcEEEEEcCCC-ceEE
Q 005254 501 AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQ---VVITAS-GDKTIKIWSISDG-SCLK 572 (706)
Q Consensus 501 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~---~l~~~~-~dg~i~iwd~~~~-~~~~ 572 (706)
.+..+|-.+ -..+|.+.+-+-........++. ...+-++-...+++. .++-.. ..+ ..++-.... ....
T Consensus 134 ~~f~~GVav--lt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~ 210 (829)
T KOG2280|consen 134 RFFHNGVAV--LTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLH 210 (829)
T ss_pred EEecCceEE--EecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccccc
Confidence 555555333 33345554433222212222222 111112222222211 111111 111 111111111 1112
Q ss_pred EEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec
Q 005254 573 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617 (706)
Q Consensus 573 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (706)
.+....+.+..+..||+.++|+--..+|.|.+-+.+..+++..+.
T Consensus 211 ~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 211 ALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 222234667889999999999999999999998887766665554
No 436
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.22 E-value=1.1 Score=44.24 Aligned_cols=125 Identities=9% Similarity=0.091 Sum_probs=74.5
Q ss_pred CCcCeEEEEEecCC---CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC
Q 005254 440 HMGAVGAVAFSKKL---QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 516 (706)
Q Consensus 440 ~~~~v~~~~~~~~~---~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 516 (706)
....|..+.|.|-+ ..-+++......|.+|.+.....+.......+.........--.....|+|....|++-....
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 44678899998853 224666677889999999754322221111111111111111234578999888888776554
Q ss_pred cEEEEeCCCc--cEEEEEeecCCcEEEEEEccCCCEEEEecC-CCcEEEEEc
Q 005254 517 TACVWRLPDL--VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSI 565 (706)
Q Consensus 517 ~i~i~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~ 565 (706)
.-.++++... .....+ ...+-|.|.+|.+||++|+++-. .=.-++||-
T Consensus 135 vSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 4444555432 222333 35678999999999998876533 334678874
No 437
>PRK10115 protease 2; Provisional
Probab=95.16 E-value=5.4 Score=42.47 Aligned_cols=235 Identities=9% Similarity=0.012 Sum_probs=114.6
Q ss_pred eecCCCEEEEEeeCCC----cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC-----CeEEEEEecCCCC
Q 005254 406 ALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSD 476 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~ 476 (706)
++|+++.++++...+| .+++.|+.++..+...-.. .-..++|.++++.++++...+ ..|..+++.+...
T Consensus 134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence 6788887555544444 5888899887643221111 114699999988666665432 3566666654411
Q ss_pred CCCcccccceeEEEeecCcceE-EEEEcCCCCEEEEeeC---CCcEEEEeC--CCccEEEEEeecCCcEEEEEEccCCCE
Q 005254 477 DAEQPMNLKAKAVVAAHGKDIN-SLAVAPNDSLVCTGSQ---DRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQV 550 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~---dg~i~i~d~--~~~~~~~~~~~~~~~v~~~~~s~~~~~ 550 (706)
. ....+........ ....+.++++++..+. ++.+.+++. .++.....+.........+. +..+.+
T Consensus 212 ~--------d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 212 Q--------DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred H--------CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 1 1122222222222 3344558887765543 356888884 33433222222222222222 323333
Q ss_pred EEEecC---CCcEEEEEcCCCceEEEEeec-c-cCEEEEEEEeCCCEEEEEeCCCCEE--EEECCCCeEEEEec-cCCCc
Q 005254 551 VITASG---DKTIKIWSISDGSCLKTFEGH-T-SSVLRASFLTRGAQIVSCGADGLVK--LWTVRTGECIATYD-KHEDK 622 (706)
Q Consensus 551 l~~~~~---dg~i~iwd~~~~~~~~~~~~~-~-~~i~~~~~s~~~~~l~~~~~dg~i~--iwd~~~~~~~~~~~-~~~~~ 622 (706)
++.... ...|...++........+..+ . ..+..+.+. .+..+++...+|.-+ +++..++ .+..+. .....
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 360 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAY 360 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence 333222 223444444421222333334 2 367777776 334555666666544 4454433 334433 22223
Q ss_pred EEEEEEc--CCCC-EEEEEeC---CCcEEEEECCchh
Q 005254 623 IWALAVG--KKTE-MFATGGS---DALVNLWHDSTAA 653 (706)
Q Consensus 623 v~~~~~s--~~~~-~l~~~~~---dg~i~vw~~~~~~ 653 (706)
+..+.++ +++. ++++.+. -+.+..+|+.+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3334444 3333 4444332 4678888877653
No 438
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=95.04 E-value=0.14 Score=42.95 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=26.5
Q ss_pred CCeEEEEECCCC------CEEEEecCCCcEEEEECCCC
Q 005254 103 GPAIGMACHPSG------GLLATAGADRKVLVWDVDGG 134 (706)
Q Consensus 103 ~~v~~~~~s~~~------~~l~~~~~d~~i~vw~~~~~ 134 (706)
..|.+++|||-| -+||+.+.++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 489999999954 47889999999999987643
No 439
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.03 E-value=3.3 Score=39.39 Aligned_cols=234 Identities=13% Similarity=0.133 Sum_probs=113.4
Q ss_pred EEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE---EEEE----eCCCcCeEEEEEecC----CCeEEEEecC------
Q 005254 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC---VGVG----TGHMGAVGAVAFSKK----LQNFLVSGSS------ 462 (706)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~----~~~~~~v~~~~~~~~----~~~~l~~~~~------ 462 (706)
..++ +.|++.. +++...|.|++++ ..+.. +... .........++++|+ +. +.++.+.
T Consensus 5 ~~~a--~~pdG~l--~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~-lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 5 RSMA--FLPDGRL--LVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGY-LYVYYTNADEDGG 78 (331)
T ss_dssp EEEE--EETTSCE--EEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-E-EEEEEEEE-TSSS
T ss_pred eEEE--EeCCCcE--EEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCE-EEEEEEcccCCCC
Confidence 4555 7788654 4456699999999 33333 2222 234457788999994 33 3333321
Q ss_pred C--CeEEEEEecCCCCCCCccccccee-EEEe---ecCcceEEEEEcCCCCEEEEeeCCCc-------------EEEEeC
Q 005254 463 D--HTIKVWSFDGLSDDAEQPMNLKAK-AVVA---AHGKDINSLAVAPNDSLVCTGSQDRT-------------ACVWRL 523 (706)
Q Consensus 463 d--~~i~i~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~-------------i~i~d~ 523 (706)
. ..|.-|.+....... ...+.. .... ........|+|.|||.+.++.+..+. |.-.+.
T Consensus 79 ~~~~~v~r~~~~~~~~~~---~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~ 155 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDL---SSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP 155 (331)
T ss_dssp SEEEEEEEEEEETTSCEE---EEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET
T ss_pred CcceeeEEEeccCCcccc---ccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecc
Confidence 1 234444444331000 001111 1111 12344567999999977766554332 222221
Q ss_pred CCccE-------------EEE-EeecCCcEEEEEEccC-CCEEEEe-cCCCcEEEEEcCCC-------------------
Q 005254 524 PDLVS-------------VVT-FRGHKRGIWSVEFSPV-DQVVITA-SGDKTIKIWSISDG------------------- 568 (706)
Q Consensus 524 ~~~~~-------------~~~-~~~~~~~v~~~~~s~~-~~~l~~~-~~dg~i~iwd~~~~------------------- 568 (706)
. ++. ... -.++ .....++|+|. |.+.++= +.|+.=.|.-+..+
T Consensus 156 d-G~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~ 233 (331)
T PF07995_consen 156 D-GSIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPI 233 (331)
T ss_dssp T-SSB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-E
T ss_pred c-CcCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcc
Confidence 1 110 000 1112 22457899998 5554432 22222222222111
Q ss_pred ----------ceEEEEeecccCEEEEEEEeC-------CCEEEEEeCCCCEEEEECCCCeEEEE----eccCCCcEEEEE
Q 005254 569 ----------SCLKTFEGHTSSVLRASFLTR-------GAQIVSCGADGLVKLWTVRTGECIAT----YDKHEDKIWALA 627 (706)
Q Consensus 569 ----------~~~~~~~~~~~~i~~~~~s~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~ 627 (706)
.++..+. +...++.+.|-.. |.++++.-..+.|....+.++..+.. +......+..++
T Consensus 234 ~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~ 312 (331)
T PF07995_consen 234 GDAPSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVA 312 (331)
T ss_dssp CTGSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEE
T ss_pred ccccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEE
Confidence 1222333 3356677777643 44566555566788877765543222 223455899999
Q ss_pred EcCCCCEEEEEeCCCcEE
Q 005254 628 VGKKTEMFATGGSDALVN 645 (706)
Q Consensus 628 ~s~~~~~l~~~~~dg~i~ 645 (706)
+.|||.+.++...+|.|.
T Consensus 313 ~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EETTSEEEEEE-TTTTEE
T ss_pred EcCCCeEEEEECCCCeEe
Confidence 999999988888888764
No 440
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.99 E-value=0.032 Score=56.74 Aligned_cols=140 Identities=18% Similarity=0.267 Sum_probs=84.2
Q ss_pred eEEEEEcc--CCeEEEeec-----CCCccEEEEEEcc---CCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEE-
Q 005254 41 SINIVDLS--NASIKSTIE-----GGSDTITALALSP---DDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA- 109 (706)
Q Consensus 41 ~i~i~d~~--~~~~~~~l~-----~~~~~i~~l~~s~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~- 109 (706)
.+.||++. .|++...+. .-...+.-+.|.| +.-++..+..++.+++.++.+... ..+.+|...+..++
T Consensus 154 ~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~ 232 (1283)
T KOG1916|consen 154 ELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAF 232 (1283)
T ss_pred hhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHH
Confidence 57778764 455433332 2223445555554 566777777788888877654332 44555776666554
Q ss_pred ----------ECCCCCEEEEecCCCcEEEEECC-----CCeEEEEeeCCCC-cEEEEEEcCC-------CCceEEEEEe-
Q 005254 110 ----------CHPSGGLLATAGADRKVLVWDVD-----GGFCTHYFKGHKG-VVSSILFHPD-------TDKSLLFSGS- 165 (706)
Q Consensus 110 ----------~s~~~~~l~~~~~d~~i~vw~~~-----~~~~~~~~~~~~~-~v~~~~~~~~-------~~~~~l~~~~- 165 (706)
.||||+.+|.++.||.++.|.+. .-++++..+.|.+ +-.|.-|+.. +...++++++
T Consensus 233 ~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd 312 (1283)
T KOG1916|consen 233 FAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTD 312 (1283)
T ss_pred HhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEeccc
Confidence 58999999999999998888763 2345566667763 3333334332 2223344444
Q ss_pred cCCeEEEEECCCCeeE
Q 005254 166 DDATVRVWDLLAKKCV 181 (706)
Q Consensus 166 ~dg~i~vwd~~~~~~~ 181 (706)
.+..+++|.-...+|+
T Consensus 313 ~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 313 VNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCcceeEeeccchhhh
Confidence 4567889987666655
No 441
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=3.1 Score=42.42 Aligned_cols=180 Identities=11% Similarity=0.107 Sum_probs=97.4
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEE----eeccCCCeEEEEECCCCCE
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRS----WKGHDGPAIGMACHPSGGL 116 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~v~~~~~s~~~~~ 116 (706)
.|.||+. +|+.+..+.-....+-.+.|+.+..+ +....+|++++|++... .+.. +......|..+.|..+|-
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeL-I~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GV- 140 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDEEL-ICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGV- 140 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccCCceE-EEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCce-
Confidence 5999996 56666544433448889999988765 45678999999998542 2222 122334566677776663
Q ss_pred EEEecCCCcEEEEE-CCCCeEEEEeeC---CCCcEEEEEEcCCCCc-eEEEEEe-cCCeEEEEECCCCe-eEEEeecccc
Q 005254 117 LATAGADRKVLVWD-VDGGFCTHYFKG---HKGVVSSILFHPDTDK-SLLFSGS-DDATVRVWDLLAKK-CVATLDKHFS 189 (706)
Q Consensus 117 l~~~~~d~~i~vw~-~~~~~~~~~~~~---~~~~v~~~~~~~~~~~-~~l~~~~-~dg~i~vwd~~~~~-~~~~~~~~~~ 189 (706)
++-..+|.+.+-+ .+... ...++. ..-+-.|-...+++.. ..++-.. ..+ ..+.-.++.. ....+....+
T Consensus 141 -avlt~~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 141 -AVLTVSGQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred -EEEecCCcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCc
Confidence 3333445554433 32221 222221 1111122222222111 1111111 111 1112111111 1122222246
Q ss_pred eEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 190 RVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 190 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
.+..+..||+.++|+--...|.+.+-+.+..+....+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 78889999999999999999999999888776665554
No 442
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.97 E-value=0.019 Score=54.04 Aligned_cols=274 Identities=14% Similarity=0.147 Sum_probs=159.3
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
+.+.+.. ++.++.+..+..||-...... .. ...+..-.++|..++...++.+-..+.+.+|++.......
T Consensus 42 w~~e~~n-lavaca~tiv~~YD~agq~~l-e~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq------- 111 (615)
T KOG2247|consen 42 WRPEGHN-LAVACANTIVIYYDKAGQVIL-EL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ------- 111 (615)
T ss_pred EecCCCc-eehhhhhhHHHhhhhhcceec-cc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-------
Confidence 6677777 777777878888885433222 21 2344555788888888777888889999999997642110
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEc
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 565 (706)
...+....-.-+.|++.+..++.+...|.+.|++-.+.+.+...-.|...++++++.+.+. .+.++.|..+.+-..
T Consensus 112 ---LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 112 ---LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVTTQ 187 (615)
T ss_pred ---HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHHhhh
Confidence 0011111112267899999999999999999999888777776666999999999998654 555566655544333
Q ss_pred CCCceEEEEe--ecccCEE-----EEEEEeCCCEEEEEeCCCCEEE-----EECCCCeEEEEeccCCCcEEEEEEcCCCC
Q 005254 566 SDGSCLKTFE--GHTSSVL-----RASFLTRGAQIVSCGADGLVKL-----WTVRTGECIATYDKHEDKIWALAVGKKTE 633 (706)
Q Consensus 566 ~~~~~~~~~~--~~~~~i~-----~~~~s~~~~~l~~~~~dg~i~i-----wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 633 (706)
. ++.....+ +..+... .=.|..-|..+.+.-. |.+.+ =..+...-+ .++...+.+.|..|--||.
T Consensus 188 e-geta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE~D~pval-~fq~~~gni~cyrwylDg~ 264 (615)
T KOG2247|consen 188 E-GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNELDEPVAL-QFQEKYGNIHCYRWYLDGY 264 (615)
T ss_pred c-cceeeeeeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcCCCCccce-EeeecCCceeEEEEecccc
Confidence 2 12111111 1111110 0122333444433322 11111 111122223 5666677889999988875
Q ss_pred EEEEEeCCCcEEEEECCchhHHHHHHHHHHHHHHhcchhhhhhhccchhHhhheeeecCCcchHHHHH
Q 005254 634 MFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELF 701 (706)
Q Consensus 634 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (706)
. ..+-.-|.|..-...+++..++...+. + -...+...+......+++.++-+-++-+++-+++
T Consensus 265 i-~igf~ag~iV~iS~h~aeLgaeffqkl-d---y~~aLqsiavsqcvnkaftlgdn~nkvRdl~el~ 327 (615)
T KOG2247|consen 265 I-LIGFDAGYIVSISAHNAELGAEFFQKL-D---YRGALQSIAVSQCVNKAFTLGDNMNKVRDLDELT 327 (615)
T ss_pred c-cccccceeEEEEeccchHHHHHHHHHh-h---HHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4 446666667777777777766655443 1 1223334445555566666665555555554443
No 443
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.81 E-value=0.17 Score=29.78 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=26.5
Q ss_pred ccEEEEEEccCC---CEEEEEeccCeEEEEECCC
Q 005254 61 DTITALALSPDD---KLLFSSGHSREIRVWDLST 91 (706)
Q Consensus 61 ~~i~~l~~s~~~---~~l~s~~~d~~i~iwd~~~ 91 (706)
+.|.++.|||+. .+|+.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 5899998899999999985
No 444
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.80 E-value=0.14 Score=30.13 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=26.4
Q ss_pred CCeEEEEECCCC---CEEEEecCCCcEEEEECCCC
Q 005254 103 GPAIGMACHPSG---GLLATAGADRKVLVWDVDGG 134 (706)
Q Consensus 103 ~~v~~~~~s~~~---~~l~~~~~d~~i~vw~~~~~ 134 (706)
+.|.++.|||+. .+|+.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 48888888899999999853
No 445
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=94.73 E-value=7.8 Score=42.19 Aligned_cols=187 Identities=13% Similarity=0.184 Sum_probs=96.7
Q ss_pred eCCCcEEEEeCCCceEEEEEeC-CCcCeEEEEEe---c----CC-CeEEEEec---------CCCeEEEEEecCCCCCCC
Q 005254 418 SKDNSVRLWDSESRCCVGVGTG-HMGAVGAVAFS---K----KL-QNFLVSGS---------SDHTIKVWSFDGLSDDAE 479 (706)
Q Consensus 418 ~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~---~----~~-~~~l~~~~---------~d~~i~i~~~~~~~~~~~ 479 (706)
+....|.+.+..+++.+..+.- ....+.++... . .+ +.++++|. ..|.+.++|+-.--+.+.
T Consensus 1001 ~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepg 1080 (1366)
T KOG1896|consen 1001 GEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPG 1080 (1366)
T ss_pred cccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCC
Confidence 3445666666666655544332 12233333322 1 11 34677764 248899999865322222
Q ss_pred cccc-cceeEEE-eecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC-ccEEEEEeecCCcEEEEEEccCCCEEEEecC
Q 005254 480 QPMN-LKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITASG 556 (706)
Q Consensus 480 ~~~~-~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 556 (706)
.+.. .+..... ...++.|..++ .-+|.++.+ ....|.+|++.. ...+.. .--.-++.-....--.++|+.|.-
T Consensus 1081 kP~t~~KlKel~~eE~KGtVsavc-eV~G~l~~~--~GqKI~v~~l~r~~~ligV-aFiD~~~yv~s~~~vknlIl~gDV 1156 (1366)
T KOG1896|consen 1081 KPFTKNKLKELYIEEQKGTVSAVC-EVRGHLLSS--QGQKIIVRKLDRDSELIGV-AFIDLPLYVHSMKVVKNLILAGDV 1156 (1366)
T ss_pred CCcccceeeeeehhhcccceEEEE-EeccEEEEc--cCcEEEEEEeccCCcceee-EEeccceeEEehhhhhhheehhhh
Confidence 2221 1222222 23445555554 335644443 345699999843 333221 112222333333334567777776
Q ss_pred CCcEEEEEcCCCceEEEEee---cccCEEEEEEEeCCC--EEEEEeCCCCEEEEECC
Q 005254 557 DKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGA--QIVSCGADGLVKLWTVR 608 (706)
Q Consensus 557 dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~--~l~~~~~dg~i~iwd~~ 608 (706)
-..|.+.-....-....+-+ ..-.+.+..|--||. ++++++.|++|+++-..
T Consensus 1157 ~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1157 MKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 66677665543322222221 223578888888887 46888899999988553
No 446
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.73 E-value=0.0046 Score=57.91 Aligned_cols=137 Identities=12% Similarity=0.141 Sum_probs=93.3
Q ss_pred eEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEE-EeccCeEEEEECCCCeEEE-Eeecc
Q 005254 25 LVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFS-SGHSREIRVWDLSTLKCLR-SWKGH 101 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~-~~~~~ 101 (706)
..+-|.+.-++.++.+ .+..||- .++....+. .++....++|..++..++. +-..+.+.+||+.+..... .+.+
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg- 116 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG- 116 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC-
Confidence 4455677667777777 5667774 444433333 3455567888888876665 4557899999997643211 1111
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecC
Q 005254 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167 (706)
Q Consensus 102 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 167 (706)
...-.-+.|++....++.+...+.+.|++..+.+.+.....|..+++++++.+.+. .+.++.|
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~---vil~dcd 179 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY---VILCDCD 179 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce---eeecCcH
Confidence 11222278999999999998999999999988877776666999999999998743 4444433
No 447
>PRK13684 Ycf48-like protein; Provisional
Probab=94.65 E-value=4.2 Score=38.74 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=87.6
Q ss_pred CcceEEEEEcCCCCEEEEeeCCCcEEE-EeCCCccEEEE-EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceE
Q 005254 494 GKDINSLAVAPNDSLVCTGSQDRTACV-WRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL 571 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~dg~i~i-~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 571 (706)
...+..+.+.|++.+++++. .|.+.. +|- .++.-.. .......++++.+.++++.++++ ..|.+++=..+.+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 44678899999987776654 454443 221 2222222 22345678999999998876664 5676553233344332
Q ss_pred EEEee----cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec---cCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 005254 572 KTFEG----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMFATGGSDALV 644 (706)
Q Consensus 572 ~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i 644 (706)
..... ....+..+.+.+++..++ ++.+|.+. .....|+.-...+ .-......+.|..+++.++ .+..|.|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence 22111 123577888998876555 45667555 3444454333332 2224577788876666555 6678988
Q ss_pred EEEECC
Q 005254 645 NLWHDS 650 (706)
Q Consensus 645 ~vw~~~ 650 (706)
..|+-.
T Consensus 326 l~~~~~ 331 (334)
T PRK13684 326 LRYVGS 331 (334)
T ss_pred EEecCC
Confidence 888643
No 448
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.58 E-value=4.1 Score=38.72 Aligned_cols=152 Identities=14% Similarity=0.204 Sum_probs=85.9
Q ss_pred CcCeEEEEEecCCCeEEEEecCCCe------EEEEEecCCCCCCCcccccceeEEEee--------cCcceEEEEEcCCC
Q 005254 441 MGAVGAVAFSKKLQNFLVSGSSDHT------IKVWSFDGLSDDAEQPMNLKAKAVVAA--------HGKDINSLAVAPND 506 (706)
Q Consensus 441 ~~~v~~~~~~~~~~~~l~~~~~d~~------i~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~s~~~ 506 (706)
-+.+..+.+.+++. .+++.+.+|. +..+++.......... .......+.. ......+|++.++|
T Consensus 19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGV-TILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccce-EeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 45677888886544 4556666666 5555554411100000 0001111111 11245578887888
Q ss_pred CEEEEeeCC------CcEEEEeCCCccEEEEEe---------------ecCCcEEEEEEccCCCEEEEecC-----CC--
Q 005254 507 SLVCTGSQD------RTACVWRLPDLVSVVTFR---------------GHKRGIWSVEFSPVDQVVITASG-----DK-- 558 (706)
Q Consensus 507 ~~l~~~~~d------g~i~i~d~~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~-----dg-- 558 (706)
.++++.-.+ ..|..++.. ++....+. ..+....+|+++|+|+.|+++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888877666 678888865 55444331 13456889999999997666543 22
Q ss_pred c-------EEE--EEcCC-CceEEEEe----e-----cccCEEEEEEEeCCCEEEE
Q 005254 559 T-------IKI--WSISD-GSCLKTFE----G-----HTSSVLRASFLTRGAQIVS 595 (706)
Q Consensus 559 ~-------i~i--wd~~~-~~~~~~~~----~-----~~~~i~~~~~s~~~~~l~~ 595 (706)
. +++ ||..+ ++....+. . ....+..+.+.+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 444 44444 32333222 1 2457888999999987765
No 449
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.57 E-value=2 Score=43.56 Aligned_cols=78 Identities=10% Similarity=0.200 Sum_probs=48.4
Q ss_pred ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEE-ECCCCeE
Q 005254 534 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW-TVRTGEC 612 (706)
Q Consensus 534 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw-d~~~~~~ 612 (706)
.|.+.|--+..+..+..|+.-...-.+.++|+.+.+....+ +-++.+.|.|....++.-+.|. +.|| ++.-.+.
T Consensus 335 nh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~dn-l~iwyn~d~peq 409 (1636)
T KOG3616|consen 335 NHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGDN-LCIWYNIDAPEQ 409 (1636)
T ss_pred cccccccceeccchhhhhhcccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCCc-eEEEecCCcchh
Confidence 37777777777776666666555666788888655332111 2245578888777777666555 5555 6655555
Q ss_pred EEEe
Q 005254 613 IATY 616 (706)
Q Consensus 613 ~~~~ 616 (706)
+..+
T Consensus 410 vt~~ 413 (1636)
T KOG3616|consen 410 VTMF 413 (1636)
T ss_pred heee
Confidence 4444
No 450
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.43 E-value=0.25 Score=46.37 Aligned_cols=157 Identities=13% Similarity=0.158 Sum_probs=95.7
Q ss_pred eccceEEcCCCCEEEEeeCCeEEEEEccCCeEE-Eee-cCCCc----cEE-EEEEccCCCEEEEEeccCeEEEE-ECCCC
Q 005254 21 GGGPLVVSSDGSFIACACGESINIVDLSNASIK-STI-EGGSD----TIT-ALALSPDDKLLFSSGHSREIRVW-DLSTL 92 (706)
Q Consensus 21 ~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~-~~l-~~~~~----~i~-~l~~s~~~~~l~s~~~d~~i~iw-d~~~~ 92 (706)
....+-+.|||++++.-.++.+.|+++.+.... +.+ +...+ .|+ ++..-..|.-|.++..||.|.-| |+..+
T Consensus 222 ~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~ 301 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRD 301 (733)
T ss_pred chHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecC
Confidence 345788999999999999999999988665432 112 21111 222 22223346667788889988877 44322
Q ss_pred -----eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecC
Q 005254 93 -----KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167 (706)
Q Consensus 93 -----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 167 (706)
..++.++-...++..+.-..+.+-+++-...|++.++.-...+.+.. ..--..+.-+++||.+++ +++ .+.
T Consensus 302 ~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~--Ll~-e~~ 377 (733)
T COG4590 302 GQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAY--LLS-EDQ 377 (733)
T ss_pred CCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccch--hee-ecC
Confidence 12233332334555454444556677777888888877655444332 222336677899998776 444 345
Q ss_pred CeEEEEECCCCeeE
Q 005254 168 ATVRVWDLLAKKCV 181 (706)
Q Consensus 168 g~i~vwd~~~~~~~ 181 (706)
|.++++.+++..+-
T Consensus 378 gki~~~~l~Nr~Pe 391 (733)
T COG4590 378 GKIRLAQLENRNPE 391 (733)
T ss_pred CceEEEEecCCCCC
Confidence 66888887765443
No 451
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.39 E-value=2.5 Score=43.72 Aligned_cols=111 Identities=13% Similarity=0.266 Sum_probs=75.9
Q ss_pred ceEEEEEcC--CCCEEEEeeCCCcEEEEeCCC-------c-------------cEEEEEeecCCcEEEEEEc--cCCCEE
Q 005254 496 DINSLAVAP--NDSLVCTGSQDRTACVWRLPD-------L-------------VSVVTFRGHKRGIWSVEFS--PVDQVV 551 (706)
Q Consensus 496 ~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~-------~-------------~~~~~~~~~~~~v~~~~~s--~~~~~l 551 (706)
.|+.|.+.. +...|+.+.+||.|.+|..++ . ++...+. .....++++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 356665544 557899999999999997521 0 0111222 34578899998 788899
Q ss_pred EEecCCCcEEEEEcCCC--ce-EEEEeecccCEEEEEEEeCC---C---EEEEEeCCCCEEEEEC
Q 005254 552 ITASGDKTIKIWSISDG--SC-LKTFEGHTSSVLRASFLTRG---A---QIVSCGADGLVKLWTV 607 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~~--~~-~~~~~~~~~~i~~~~~s~~~---~---~l~~~~~dg~i~iwd~ 607 (706)
|+++....|.||-.... +. ...-..+...|.+++|.++. . +|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99998888888876432 11 11111256678899998754 2 7888999999999887
No 452
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.24 E-value=5.8 Score=38.60 Aligned_cols=144 Identities=12% Similarity=0.074 Sum_probs=85.1
Q ss_pred EEEEEEccCCCEEEEEeccCeEEEEECCCCeE--EEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe-----
Q 005254 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKC--LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF----- 135 (706)
Q Consensus 63 i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~----- 135 (706)
...+..++||.+++.+..-..++-|| .|.. ...-......+.++.|.+++..++++ .+|. .+|..+.++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~-l~~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGG-LYVSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCce-EEEecCCCCccccc
Confidence 34456778888777665443333344 2321 11112234678999999999888776 4454 445555553
Q ss_pred EEEEeeC--CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEee---cccceEEEEEEecCCCEEEEEeCCC
Q 005254 136 CTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAGRDK 210 (706)
Q Consensus 136 ~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg 210 (706)
....... ....+..+.|.+++. ++.++..|.+.... ..|+.-...+ .-......+.|.++++ .+..+.+|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~---~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G 391 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKE---AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDG 391 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCc---EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCc
Confidence 2222221 223588999998755 67777888666653 4454433322 2245678888877765 55555688
Q ss_pred EEEEE
Q 005254 211 VVNLW 215 (706)
Q Consensus 211 ~i~~w 215 (706)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 77655
No 453
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.20 E-value=0.5 Score=41.37 Aligned_cols=66 Identities=11% Similarity=0.213 Sum_probs=50.3
Q ss_pred EEEeCCCEEEEEeCCCCEEEEECCCCeEEEEe-------c-------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATY-------D-------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 585 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.+..++.+|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 45567889999999999999999998765432 1 2456788999998898777665 5677877654
Q ss_pred c
Q 005254 651 T 651 (706)
Q Consensus 651 ~ 651 (706)
-
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 3
No 454
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.18 E-value=9.6 Score=40.88 Aligned_cols=140 Identities=11% Similarity=0.088 Sum_probs=80.2
Q ss_pred CCcEEEEeCCC-ccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeec--ccCEEEEEEEeCCC
Q 005254 515 DRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH--TSSVLRASFLTRGA 591 (706)
Q Consensus 515 dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~ 591 (706)
+|.++.|++-. ++.+.-+....-+-.-.++.|-..++++|- ...+++||+...++++..+.. ...|+.+.+ .+.
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~ 987 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGA 987 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEee--cce
Confidence 35567776543 332222221111112345667666666654 456999999877766554322 345655555 456
Q ss_pred EEEEEeCCCCEEE--EECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHH
Q 005254 592 QIVSCGADGLVKL--WTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEA 658 (706)
Q Consensus 592 ~l~~~~~dg~i~i--wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 658 (706)
++++|...-.+.+ |+-...+.+.-.. .-...|+++.+- |...++.+..-|.+.+-++.....+...
T Consensus 988 RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d~~e~~~ 1056 (1205)
T KOG1898|consen 988 RIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPDVSEEAS 1056 (1205)
T ss_pred EEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCcchhhhc
Confidence 8888877665554 5544444443332 223456666654 4556777888888888888766555443
No 455
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.15 E-value=1.5 Score=42.30 Aligned_cols=149 Identities=9% Similarity=0.079 Sum_probs=90.7
Q ss_pred ecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCe------EEEEecCCCeEEEEEecCCCCCCCc
Q 005254 407 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN------FLVSGSSDHTIKVWSFDGLSDDAEQ 480 (706)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~l~~~~~d~~i~i~~~~~~~~~~~~ 480 (706)
..+...++..|+....++-.|++.|+.+.....+... -+.|.|..+. --+.|-.+..|.-.|.+....
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN---- 549 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN---- 549 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCC----
Confidence 3444555666777788889999999999888877655 4666664320 123344444443333332110
Q ss_pred ccccceeEE-EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCc
Q 005254 481 PMNLKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559 (706)
Q Consensus 481 ~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 559 (706)
....... -........+..-. ...++|+++..|.|++||--.-.....+++-...|..+..+.+|+++++.+.. .
T Consensus 550 --Ki~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-y 625 (776)
T COG5167 550 --KIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-Y 625 (776)
T ss_pred --ceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-e
Confidence 0000000 00011122233333 34599999999999999976555556677788899999999999988776654 4
Q ss_pred EEEEEc
Q 005254 560 IKIWSI 565 (706)
Q Consensus 560 i~iwd~ 565 (706)
+.+-|+
T Consensus 626 llL~d~ 631 (776)
T COG5167 626 LLLTDV 631 (776)
T ss_pred EEEEec
Confidence 667675
No 456
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=13 Score=41.03 Aligned_cols=157 Identities=11% Similarity=0.158 Sum_probs=99.4
Q ss_pred CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEE--------ECCCCCEEEEecCCCcEEEEE
Q 005254 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA--------CHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~d~~i~vw~ 130 (706)
|...=+.+-+-|.=.+. -.+-|+.+.+|+.+++.....+.+-+..|..+. |-|.=+++.+.+.--.|.++-
T Consensus 77 ~~~~~~~mGiFpeI~Ra-WiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilg 155 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRA-WITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILG 155 (1311)
T ss_pred Ccceeeeeccchhhcce-EEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEE
Confidence 44444555555543332 234578999999999888888888777777765 334445665555556677765
Q ss_pred CCCCeE-------E--EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC--CCC---e-e---------------
Q 005254 131 VDGGFC-------T--HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL--LAK---K-C--------------- 180 (706)
Q Consensus 131 ~~~~~~-------~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~--~~~---~-~--------------- 180 (706)
+.-.+. . ..+......|.++....+|+ ++.++.||.|+=.-. .++ + +
T Consensus 156 V~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP 232 (1311)
T KOG1900|consen 156 VSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR---IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP 232 (1311)
T ss_pred EEeccccCcccccccceeeecCCceEEEEEeccCCc---EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence 532211 1 11223356688888776666 777777774432211 111 0 0
Q ss_pred -EEEee-cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 181 -VATLD-KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 181 -~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
+-.+. .+..+|..++....-..+++-++.|.|.+|++..
T Consensus 233 s~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 233 SLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11123 4567999999988888999999999999999976
No 457
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.72 E-value=2.2 Score=38.84 Aligned_cols=97 Identities=11% Similarity=0.189 Sum_probs=64.4
Q ss_pred cCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEec------CCCcEEEEECCCCeEEEEee----CCCCcEEEE
Q 005254 81 SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG------ADRKVLVWDVDGGFCTHYFK----GHKGVVSSI 150 (706)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~ 150 (706)
-..|++||..+.+-...-.+-.+.|+++.|..+.++++.|. ....+..||+++......-. .-.++|..+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 34699999988776655555678999999997777777774 35678899998776432222 134788888
Q ss_pred EEcCCCCceEEEEEe-cCC--eEEEEECCC
Q 005254 151 LFHPDTDKSLLFSGS-DDA--TVRVWDLLA 177 (706)
Q Consensus 151 ~~~~~~~~~~l~~~~-~dg--~i~vwd~~~ 177 (706)
.+..+....+.+.|. .+| .|..||-.+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 886554444455544 333 455565433
No 458
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.70 E-value=0.61 Score=40.86 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=49.0
Q ss_pred EccCCCEEEEEeccCeEEEEECCCCeEEEEe-------e-------ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 005254 68 LSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-------K-------GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG 133 (706)
Q Consensus 68 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 133 (706)
+..++++|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 5567899999999999999999998765432 1 2446777788887777766654 46777777654
Q ss_pred Ce
Q 005254 134 GF 135 (706)
Q Consensus 134 ~~ 135 (706)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 43
No 459
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.67 E-value=7.5 Score=37.92 Aligned_cols=196 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCC--ccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC-CCeE
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGS--DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-GPAI 106 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~--~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~ 106 (706)
||+..+...++.|.-.|..+++.+-....-. ..+..-.+..+|+ |..++.++.+...|..+|+++....... ..+.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Q ss_pred EEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec--CCeEEEEECCCCeeEEE-
Q 005254 107 GMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD--DATVRVWDLLAKKCVAT- 183 (706)
Q Consensus 107 ~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~- 183 (706)
.-..-.++..++.. .++.+...|..+|+...........-.....+|......++.+.. ++.+.-.|.++|.....
T Consensus 147 ~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 147 SPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeee
Q ss_pred ---eecc------cceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 184 ---LDKH------FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 184 ---~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
...- ...+..-...-++.. +.++.++.+...+..+++.+...+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~-~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYVDGGV-YAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeecccCcccccccccccCceEEECCcE-EEEecCCeEEEEEcCCCceEEEEec
No 460
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.64 E-value=4.1 Score=34.82 Aligned_cols=110 Identities=18% Similarity=0.231 Sum_probs=67.8
Q ss_pred EEEEEccCCCEEEEEeccCeEEEEECC--CCeEEEEeeccCCCeEEEEECCCCCEEEEecCC---C---cEEEE-ECCCC
Q 005254 64 TALALSPDDKLLFSSGHSREIRVWDLS--TLKCLRSWKGHDGPAIGMACHPSGGLLATAGAD---R---KVLVW-DVDGG 134 (706)
Q Consensus 64 ~~l~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~---~i~vw-~~~~~ 134 (706)
.++.-++. +.|..+.....|.+|++. ..+++.+|..- +.|..++++..|+||++--.+ . .+++| ||+..
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 33343432 344444556789999987 44677778754 889999999999999996422 2 56665 33221
Q ss_pred ----eEEE-EeeC---------------------CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 135 ----FCTH-YFKG---------------------HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 135 ----~~~~-~~~~---------------------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
.++. ++-| -..++.+++..|-... |+.|+. +.+.+|.+...
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~--LlVg~~-~~l~lf~l~~~ 165 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN--LLVGCG-NKLVLFTLKYQ 165 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC--EEEEcC-CEEEEEEEEEE
Confidence 1111 1111 2345677888776555 666655 45888876543
No 461
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.48 E-value=1.1 Score=45.32 Aligned_cols=70 Identities=20% Similarity=0.354 Sum_probs=49.6
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
...++++.-+|.|+-++.+..||.|+++++...+...... ...+-..+.|...| |+++..|+.+.-|.-+
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc
Confidence 4567888889999999999999999999997655422222 22444556777655 5666667878788643
No 462
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=7.4 Score=37.23 Aligned_cols=139 Identities=12% Similarity=0.126 Sum_probs=89.0
Q ss_pred EEEEEccCCCEEEEEeccCeEEEEECCCC--eEEEEe-eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE---
Q 005254 64 TALALSPDDKLLFSSGHSREIRVWDLSTL--KCLRSW-KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT--- 137 (706)
Q Consensus 64 ~~l~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~--- 137 (706)
+.+-|...++.|++ ...|.+.=|-++.. ...-.+ ....++|.++.||+|.+.||+--.+.+|.+.+....+..
T Consensus 26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 34445444444433 23344555554322 112222 224579999999999999999999999999998443322
Q ss_pred -EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC-CCeeEEEeecccceEEEEEEecCCCEEEEEe
Q 005254 138 -HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKCVATLDKHFSRVTSMAITSDGSTLISAG 207 (706)
Q Consensus 138 -~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 207 (706)
+..+..+..|...+|+.+.+ ++.....| +-+|-.. ..+.++..+.|...|....|.++.+.++.++
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~e---~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSSTE---IAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHhccCcceeEEEEEecCee---EEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 22334556689999987633 66666666 7777554 3345566677888899999999887655443
No 463
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.40 E-value=5.3 Score=36.51 Aligned_cols=113 Identities=19% Similarity=0.281 Sum_probs=70.2
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe------ccCeEEEEECCCCeEEEEeec-----cCCCeEEEE
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG------HSREIRVWDLSTLKCLRSWKG-----HDGPAIGMA 109 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~ 109 (706)
.|++||..+.+-...-.+-.+.|++|.|..+.++++.|. ....+..||+++..-. .+.+ -.++|..+.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTALT 95 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEEE
Confidence 699999988876665555678999999997777887773 3567889999876532 2332 247888888
Q ss_pred ECC-CCC-EEEEec-CCC--cEEEEECCCCeEEEE-eeCCCCcEEEEEEcC
Q 005254 110 CHP-SGG-LLATAG-ADR--KVLVWDVDGGFCTHY-FKGHKGVVSSILFHP 154 (706)
Q Consensus 110 ~s~-~~~-~l~~~~-~d~--~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~ 154 (706)
+.. |+. ..+.|. .++ .|..||=.+-..+.. .......|..+.+.|
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 744 333 343433 333 455665433333322 222345666666654
No 464
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.39 E-value=3.4 Score=40.00 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=92.0
Q ss_pred eEEcCCCCEEEEeeCC--eEEEEEccCCeEEEeecCCCccEEEEEEccCC--------CEEEEEeccCeEEEEECC-CCe
Q 005254 25 LVVSSDGSFIACACGE--SINIVDLSNASIKSTIEGGSDTITALALSPDD--------KLLFSSGHSREIRVWDLS-TLK 93 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~--~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~--------~~l~s~~~d~~i~iwd~~-~~~ 93 (706)
|....|..+|..-++. .++-.|++-|+.+....-|... -+.|.|+. +.|+-.+.. .|.--|.. .|.
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~-svFrIDPR~~gN 549 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDY-SVFRIDPRARGN 549 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeeccc-ceEEecccccCC
Confidence 4445566666655554 6888999999999988877665 67888854 344444444 44444443 332
Q ss_pred EEEEeec----cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCe
Q 005254 94 CLRSWKG----HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (706)
Q Consensus 94 ~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 169 (706)
.+..... ......+..-. ...|+|+++..|.|++||--.-+....+.+....|..+..+.+|+. +++.+. ..
T Consensus 550 Ki~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~--ilaTCk-~y 625 (776)
T COG5167 550 KIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKH--ILATCK-NY 625 (776)
T ss_pred ceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcE--EEEeec-ce
Confidence 2222211 11222232222 3459999999999999997666666667778889999999999885 444443 45
Q ss_pred EEEEEC
Q 005254 170 VRVWDL 175 (706)
Q Consensus 170 i~vwd~ 175 (706)
+.+-|+
T Consensus 626 llL~d~ 631 (776)
T COG5167 626 LLLTDV 631 (776)
T ss_pred EEEEec
Confidence 666665
No 465
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.35 E-value=7.6 Score=37.01 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=43.6
Q ss_pred cCcceEEEEEcC-------CCCEEEEeeCCCcEEEEeCCCccEEEE----EeecCCcEEEEEEccCCCEEEEecCCCcEE
Q 005254 493 HGKDINSLAVAP-------NDSLVCTGSQDRTACVWRLPDLVSVVT----FRGHKRGIWSVEFSPVDQVVITASGDKTIK 561 (706)
Q Consensus 493 ~~~~i~~~~~s~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 561 (706)
+...++.+.|-. .|.+++..-..+.|...++.....+.. +......+..+++.|||.+.++.+.+|.|+
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 345667777764 455666666667888888765533322 122444799999999999988888888764
No 466
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.23 E-value=7 Score=36.21 Aligned_cols=179 Identities=15% Similarity=0.227 Sum_probs=99.7
Q ss_pred eEEcCCCCEEEEeeC-------------CeEEEEEccCCeEEEeecCC------CccEEEEEEccCC-----CEEEEEe-
Q 005254 25 LVVSSDGSFIACACG-------------ESINIVDLSNASIKSTIEGG------SDTITALALSPDD-----KLLFSSG- 79 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~-------------~~i~i~d~~~~~~~~~l~~~------~~~i~~l~~s~~~-----~~l~s~~- 79 (706)
+.+.++|++-+.=.+ -.|.+||+.+++.++++.-+ ...+..+++.... .++..+.
T Consensus 6 v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~ 85 (287)
T PF03022_consen 6 VQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS 85 (287)
T ss_dssp EEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET
T ss_pred EEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC
Confidence 666777766655333 27999999999987766432 4578888888732 2444443
Q ss_pred ccCeEEEEECCCCeEEEEeecc-------------------CCCeEEEEECC---CCCEEEEecCCCcEEEEECCCC---
Q 005254 80 HSREIRVWDLSTLKCLRSWKGH-------------------DGPAIGMACHP---SGGLLATAGADRKVLVWDVDGG--- 134 (706)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~-------------------~~~v~~~~~s~---~~~~l~~~~~d~~i~vw~~~~~--- 134 (706)
..+.|.|+|+.+++.-+.+..+ ...+..++.+| ++++|....-.+ -.+|.+.+.
T Consensus 86 ~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~ 164 (287)
T PF03022_consen 86 GGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLR 164 (287)
T ss_dssp TTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHC
T ss_pred CcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhh
Confidence 3468999999998766654321 22366666655 666666554322 234443221
Q ss_pred -----------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe---eEEEe---ecccceEEEEEEe
Q 005254 135 -----------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---CVATL---DKHFSRVTSMAIT 197 (706)
Q Consensus 135 -----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~---~~~~~~v~~~~~~ 197 (706)
+.+..+.........+++.++| .++++--..+.|..|+..+.- ....+ ...-..+..+.+.
T Consensus 165 ~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G--~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~ 242 (287)
T PF03022_consen 165 DPSLSDAQALASQVQDLGDKGSQSDGMAIDPNG--NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKID 242 (287)
T ss_dssp STT--HHH-HHHT-EEEEE---SECEEEEETTT--EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-
T ss_pred CccccccccccccceeccccCCCCceEEECCCC--cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeec
Confidence 0112221122455667777754 447777888999999987511 11222 1113567888888
Q ss_pred c--CCCEEEEE
Q 005254 198 S--DGSTLISA 206 (706)
Q Consensus 198 ~--~~~~l~~~ 206 (706)
+ +|.+.+..
T Consensus 243 ~~~~g~L~v~s 253 (287)
T PF03022_consen 243 PEGDGYLWVLS 253 (287)
T ss_dssp T--TS-EEEEE
T ss_pred cccCceEEEEE
Confidence 8 66544443
No 467
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.04 E-value=8.4 Score=36.64 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=80.6
Q ss_pred cceEEc-CCCCEEEEeeCCe------EEEEEccC--C--eEE-----EeecCCCc--------cEEEEEEccCCCEEEEE
Q 005254 23 GPLVVS-SDGSFIACACGES------INIVDLSN--A--SIK-----STIEGGSD--------TITALALSPDDKLLFSS 78 (706)
Q Consensus 23 ~~~~~s-~dg~~l~~~~~~~------i~i~d~~~--~--~~~-----~~l~~~~~--------~i~~l~~s~~~~~l~s~ 78 (706)
+.|++. .++.+++....+. ++.+++.. + ..+ ..+....+ -.-+|++.++|.++++.
T Consensus 23 Sgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~is~ 102 (326)
T PF13449_consen 23 SGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWISS 102 (326)
T ss_pred eeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEEEe
Confidence 469998 4566666555445 55555543 1 111 11221111 33488888888888887
Q ss_pred ecc------CeEEEEECCCCeEEEEee---------------ccCCCeEEEEECCCCCEEEEecC-----CC--c-----
Q 005254 79 GHS------REIRVWDLSTLKCLRSWK---------------GHDGPAIGMACHPSGGLLATAGA-----DR--K----- 125 (706)
Q Consensus 79 ~~d------~~i~iwd~~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~-----d~--~----- 125 (706)
-.+ ..|..++.. |+.+..+. ..+....+|+++|||+.|.++.+ |+ .
T Consensus 103 E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~ 181 (326)
T PF13449_consen 103 EGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNG 181 (326)
T ss_pred CCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccccC
Confidence 667 889999876 66555441 13467889999999997666532 22 1
Q ss_pred --EEE--EECCC-CeEE----EEeeC-----CCCcEEEEEEcCCCCc
Q 005254 126 --VLV--WDVDG-GFCT----HYFKG-----HKGVVSSILFHPDTDK 158 (706)
Q Consensus 126 --i~v--w~~~~-~~~~----~~~~~-----~~~~v~~~~~~~~~~~ 158 (706)
+++ +|..+ ++.. ..+.. ....|..+.+.++++.
T Consensus 182 ~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l 228 (326)
T PF13449_consen 182 SPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL 228 (326)
T ss_pred ceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence 444 44444 3222 22222 4567899999998763
No 468
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=4.9 Score=33.89 Aligned_cols=70 Identities=17% Similarity=0.032 Sum_probs=38.9
Q ss_pred EEEEEec--CCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEE-EeCCCEEEEEeCCCCcceeeecCc
Q 005254 160 LLFSGSD--DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLIS-AGRDKVVNLWDLRDYSCKLTVPTY 229 (706)
Q Consensus 160 ~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~w~~~~~~~~~~~~~~ 229 (706)
++.+.+. ...|++||+.+++.+.+..-....+..=-...-|.++.. .-.+|.-..+|.++.+.+..++-+
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~ 130 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE 130 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC
Confidence 3444443 346999999999877655433222211111112233322 235788888888887776665443
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.99 E-value=0.11 Score=48.64 Aligned_cols=169 Identities=13% Similarity=0.151 Sum_probs=105.3
Q ss_pred EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceE-EEEe-eccc----CEE-EEEEEeCCCEEEEEeCCCCEEE
Q 005254 532 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL-KTFE-GHTS----SVL-RASFLTRGAQIVSCGADGLVKL 604 (706)
Q Consensus 532 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~-~~~~----~i~-~~~~s~~~~~l~~~~~dg~i~i 604 (706)
+......|..+-..|||+.|..-+. .++.++++.+.... +++- ...+ .|+ ++..-..|.-|.+++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 4445567888899999999887665 67889988654321 1111 1111 122 2222345667888999999887
Q ss_pred E-ECCCCe-----EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHHHHHHHHHHHhcchhhhhhhc
Q 005254 605 W-TVRTGE-----CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLD 678 (706)
Q Consensus 605 w-d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (706)
| |+..+. .++.++-...++..+.-..+.+-+++-+..|++.++.-...+....+...+......-.+...++..
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLS 374 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhee
Confidence 7 554322 2233333334555554444555677888899998887766665544443344455566666777777
Q ss_pred cchhHhhheeeecCCcchHHHHH
Q 005254 679 ADYTKAIQVAFELRRPHKLFELF 701 (706)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~ 701 (706)
.+..+.....++.++++-.++-|
T Consensus 375 e~~gki~~~~l~Nr~PeiswsaL 397 (733)
T COG4590 375 EDQGKIRLAQLENRNPEISWSAL 397 (733)
T ss_pred ecCCceEEEEecCCCCCccHHHh
Confidence 77778777888888887776644
No 470
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.73 E-value=2.4 Score=46.27 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=91.8
Q ss_pred eeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEe--------cCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeE
Q 005254 417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS--------KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 488 (706)
.+.|..+.+|+++++.....+.+....|..+..- |.=+ +++..+.--.|.++-+.-.........-. ...
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~Iq-hlLvvaT~~ei~ilgV~~~~~~~~~~~f~-~~~ 172 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQ-HLLVVATPVEIVILGVSFDEFTGELSIFN-TSF 172 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhh-eeEEecccceEEEEEEEeccccCcccccc-cce
Confidence 3568889999999988888777777777776543 2323 33333444456666554332211111100 112
Q ss_pred EEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeC----CCc---c---E--------------EEEEe-ecCCcEEEEE
Q 005254 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL----PDL---V---S--------------VVTFR-GHKRGIWSVE 543 (706)
Q Consensus 489 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~----~~~---~---~--------------~~~~~-~~~~~v~~~~ 543 (706)
.....+..|+++....+|+.+.+|- || .+|.+ .++ + . +..+. .+..+|..++
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 2334466789999888888777664 55 34433 111 0 0 11222 4677999999
Q ss_pred EccCCCEEEEecCCCcEEEEEcCC
Q 005254 544 FSPVDQVVITASGDKTIKIWSISD 567 (706)
Q Consensus 544 ~s~~~~~l~~~~~dg~i~iwd~~~ 567 (706)
....-+.+.+-+..|+|.+||+..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 998889999999999999999975
No 471
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.73 E-value=3.8 Score=31.86 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=71.4
Q ss_pred EEEccCCCEEEEEeccCeEEEEECCCC--------eEEEEeeccCCCeEEEEECC-----CCCEEEEecCCCcEEEEECC
Q 005254 66 LALSPDDKLLFSSGHSREIRVWDLSTL--------KCLRSWKGHDGPAIGMACHP-----SGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 66 l~~s~~~~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~vw~~~ 132 (706)
-.|......|+.++.-|.|.|.+.... ..++.+. -...|++++-.+ +...|+.|+ ..++..||++
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 345666677888888999999987643 2344444 457788876544 345677766 4779999998
Q ss_pred CCeEEEEeeCCCCcEEEEEEcCCC--CceEEEEEecCCeEEEEECCCCeeEEE
Q 005254 133 GGFCTHYFKGHKGVVSSILFHPDT--DKSLLFSGSDDATVRVWDLLAKKCVAT 183 (706)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~ 183 (706)
...-+..-. -...|.++.+-.-+ ... ++..+-+..|.-+|.+..+...+
T Consensus 82 ~N~d~Fyke-~~DGvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFYKE-VPDGVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhhhh-CccceeEEEEEecCCCCCc-EEEECceEEEEEeCCCCcEEEEE
Confidence 877655433 44667777763211 122 44444456677777655554443
No 472
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.66 E-value=3.9 Score=31.81 Aligned_cols=113 Identities=8% Similarity=0.030 Sum_probs=68.8
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCcc--------EEEEEeecCCcEEEEEEcc-----CCCEEEEecCCCcEEEEEcC
Q 005254 500 LAVAPNDSLVCTGSQDRTACVWRLPDLV--------SVVTFRGHKRGIWSVEFSP-----VDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 500 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~iwd~~ 566 (706)
-.|.....-|++++..|+|.|++..... .+..+. -...|++++-.+ +...|+.|+.. .+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 3455556678888889999999876432 333333 566788876544 34567776554 59999998
Q ss_pred CCceEEEEeecccCEEEEEEEeC---CCEEEEEeCCCCEEEEECCCCeEEEE
Q 005254 567 DGSCLKTFEGHTSSVLRASFLTR---GAQIVSCGADGLVKLWTVRTGECIAT 615 (706)
Q Consensus 567 ~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~~~ 615 (706)
...-+..-+ -...++++.+-.- ..-|+..+.+-.|.-||..-.+...+
T Consensus 82 ~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 776543333 2356677766431 22344444456777777655454443
No 473
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=92.53 E-value=6.1 Score=39.40 Aligned_cols=168 Identities=11% Similarity=0.171 Sum_probs=66.9
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEc-------cCCeEEEee-cCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe-EE
Q 005254 25 LVVSSDGSFIACACGESINIVDL-------SNASIKSTI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CL 95 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~-------~~~~~~~~l-~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~ 95 (706)
+.+.|.-.+..+..++.++||+. .++.....+ .++...+.++ +++....|.|+.|+--+.. .+
T Consensus 31 ~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I~~~l~~ 102 (422)
T PF08801_consen 31 MGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESISHLLVL 102 (422)
T ss_dssp EEEE-TTSEEEEEETTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-TT-TT--
T ss_pred EEEEcccCEEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEecccchhhhhc
Confidence 55667888888999999999998 334444444 4444444443 3344557788888643221 11
Q ss_pred EE-------------eeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEE
Q 005254 96 RS-------------WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLF 162 (706)
Q Consensus 96 ~~-------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 162 (706)
.+ +......+......+.+ ++.+..+|.|.....+....+..+.-....-.+-.+...... ++
T Consensus 103 ~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~--~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~~--~~ 178 (422)
T PF08801_consen 103 ATPSQISLLGVSYSELLSGELSTSLTNVEPSG--FIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSSS--IF 178 (422)
T ss_dssp EEEE------------------EEEEEEETTT--EEEEETT--EEEEEE-TTS-EEEEE-TT------------------
T ss_pred CccccccccccceeeecCCceEEECCCCceEE--EEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccCc--ee
Confidence 11 11011111112233444 344445566665555542222222110000000000000000 00
Q ss_pred EEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 163 SGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 163 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
++ + +.+ .......|..++..+..+.|++...+|.|.+|++..
T Consensus 179 ~~-----~----~p~------~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 179 SS-----L----LPS------FSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ----------------------------EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred cc-----c----cCC------cccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 00 0 000 111233488899988889999999999999999974
No 474
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.25 E-value=0.92 Score=26.90 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=27.9
Q ss_pred CCCCEEEEeeC--CeEEEEEccCCeEEEeecCCCccEEEEEE
Q 005254 29 SDGSFIACACG--ESINIVDLSNASIKSTIEGGSDTITALAL 68 (706)
Q Consensus 29 ~dg~~l~~~~~--~~i~i~d~~~~~~~~~l~~~~~~i~~l~~ 68 (706)
||+++|+++.. +.|.++|..+++.+..+.....+ ..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEe
Confidence 68888887764 48999999999888877654333 34444
No 475
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.02 E-value=1.2 Score=26.40 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=29.0
Q ss_pred cCCCEEEEEe-ccCeEEEEECCCCeEEEEeeccCCCeEEEEE
Q 005254 70 PDDKLLFSSG-HSREIRVWDLSTLKCLRSWKGHDGPAIGMAC 110 (706)
Q Consensus 70 ~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 110 (706)
|++++|.++. .++.|.++|..+++.+..+... ..-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5778777654 4789999999999988888753 33345554
No 476
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.92 E-value=9.6 Score=34.63 Aligned_cols=211 Identities=14% Similarity=0.156 Sum_probs=0.0
Q ss_pred CcccccceeeceeeeeeeeccceEEcCCCCEEEEeeCC-eEEEEEcc-------CCeEEEeecCCCc-----cEEEEEEc
Q 005254 3 SLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGE-SINIVDLS-------NASIKSTIEGGSD-----TITALALS 69 (706)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~i~i~d~~-------~~~~~~~l~~~~~-----~i~~l~~s 69 (706)
+..|++.|. |+++|.+.+-+...+. ...+||.. ...++..+..... ..+.+.|+
T Consensus 19 Dp~L~N~WG-------------ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN 85 (336)
T TIGR03118 19 DPGLRNAWG-------------LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFN 85 (336)
T ss_pred Cccccccce-------------eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEe
Q ss_pred cCCCE------------EEEEeccCeEEEEECCCCeE------EEEeeccCCCe---EEEEECCCCCEEEEec-CCCcEE
Q 005254 70 PDDKL------------LFSSGHSREIRVWDLSTLKC------LRSWKGHDGPA---IGMACHPSGGLLATAG-ADRKVL 127 (706)
Q Consensus 70 ~~~~~------------l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~v---~~~~~s~~~~~l~~~~-~d~~i~ 127 (706)
....+ ++.+++||+|.=|...-+.. +..-....+.| .+++-...+.+|..+. ..++|.
T Consensus 86 ~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~ID 165 (336)
T TIGR03118 86 GSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRID 165 (336)
T ss_pred CCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceE
Q ss_pred EEECCCCeEEEEeeCCCCc-------------------EEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe--ec
Q 005254 128 VWDVDGGFCTHYFKGHKGV-------------------VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DK 186 (706)
Q Consensus 128 vw~~~~~~~~~~~~~~~~~-------------------v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~ 186 (706)
|+| .+-..+..-.....+ |+-..-.++... =+.|.--|.|-++|. .++.++.+ .+
T Consensus 166 VFd-~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d--~v~G~G~G~VdvFd~-~G~l~~r~as~g 241 (336)
T TIGR03118 166 VFK-GSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRND--EVAGAGLGYVNVFTL-NGQLLRRVASSG 241 (336)
T ss_pred Eec-CccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccc--cccCCCcceEEEEcC-CCcEEEEeccCC
Q ss_pred ccceEEEEEEec------CCCEEEEEeCCCEEEEEeCCCCcceeeecCcc
Q 005254 187 HFSRVTSMAITS------DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 187 ~~~~v~~~~~~~------~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 230 (706)
.-..-+.|+..| .|.+|+---.||+|..+|..+++.+-.+....
T Consensus 242 ~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 242 RLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred cccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCC
No 477
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.74 E-value=23 Score=38.59 Aligned_cols=169 Identities=7% Similarity=0.064 Sum_probs=96.5
Q ss_pred CCCcCeEEEEEe---c--CCCeEEEEecCCCeEEEEEecCCCC------CC--CcccccceeEEEeecCcceEEEEEcC-
Q 005254 439 GHMGAVGAVAFS---K--KLQNFLVSGSSDHTIKVWSFDGLSD------DA--EQPMNLKAKAVVAAHGKDINSLAVAP- 504 (706)
Q Consensus 439 ~~~~~v~~~~~~---~--~~~~~l~~~~~d~~i~i~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~i~~~~~s~- 504 (706)
....+|..|.|. . +....++..-....+.|+...-... .. ..+............+.+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456788888887 2 1121244445556677776221111 00 00111111111123455778899998
Q ss_pred CCCEEEEeeCCCcEEEEeCCCc-----cEEEEEeecC----------CcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc
Q 005254 505 NDSLVCTGSQDRTACVWRLPDL-----VSVVTFRGHK----------RGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 569 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 569 (706)
+.+.||+.+..|...||++... ........+. +.-..+.|.++.+.|+.++.. .+.++|+++..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCC
Confidence 5579999999999999999211 1111111111 223478898888888887665 49999998776
Q ss_pred eEEEE--eecccCEEEEEEEeCCC-EEEEEeCCCCEEEEECCC
Q 005254 570 CLKTF--EGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 570 ~~~~~--~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~ 609 (706)
....+ ......|..+.-+++.. +++.- ....|...++..
T Consensus 236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 236 QTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred ccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 53312 22446788888877622 33322 236688788776
No 478
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.21 E-value=1.9 Score=36.31 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=27.2
Q ss_pred CcEEEEEEcCCC----CceEEEEEecCCeEEEEECCC
Q 005254 145 GVVSSILFHPDT----DKSLLFSGSDDATVRVWDLLA 177 (706)
Q Consensus 145 ~~v~~~~~~~~~----~~~~l~~~~~dg~i~vwd~~~ 177 (706)
..+..++|||.| ...+|++.+.+|.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 489999999954 357899999999999998653
No 479
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.09 E-value=14 Score=35.11 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=53.4
Q ss_pred CCCEEEEeeC------CeEEEEEccCCeE---EEeecCCCccE-EEEEEccCCCEEEEEec-----cCeEEEEECCCCe-
Q 005254 30 DGSFIACACG------ESINIVDLSNASI---KSTIEGGSDTI-TALALSPDDKLLFSSGH-----SREIRVWDLSTLK- 93 (706)
Q Consensus 30 dg~~l~~~~~------~~i~i~d~~~~~~---~~~l~~~~~~i-~~l~~s~~~~~l~s~~~-----d~~i~iwd~~~~~- 93 (706)
+++++++++. +.+..||+.+.+- ...+..-..+. ...+..-++++.+.|+. ...+..||..+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 5566666653 2577788776553 12221111111 11112235666666664 2468888987654
Q ss_pred -EEEEeeccCCCeEEEEECCCCCEEEEecCCC----cEEEEECCCCeE
Q 005254 94 -CLRSWKGHDGPAIGMACHPSGGLLATAGADR----KVLVWDVDGGFC 136 (706)
Q Consensus 94 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~vw~~~~~~~ 136 (706)
.+..+... ......+...+++..+.|+.++ .+.+||+++.+-
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 22222211 1222233344567777777553 356888887653
No 480
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.98 E-value=18 Score=36.04 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=49.0
Q ss_pred CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeeccc-ceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 143 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 143 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
...+|..+.+...+. +..|+.|| +..||..+++.++.-.... .+|..+..+-.| .|.+|+.+| +.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~---lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGR---LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCc---EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhh
Confidence 456788888887764 88999999 7788888888776544333 456666555555 477887777 55555443
No 481
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.83 E-value=17 Score=35.52 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=28.0
Q ss_pred EeCCCEEEEEeCCC----------------------CEEEEECCCCeEE--EEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 587 LTRGAQIVSCGADG----------------------LVKLWTVRTGECI--ATYDKHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 587 s~~~~~l~~~~~dg----------------------~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
..+++..+.|+.+. .+.+||+.+.+-. ..+........+ ..-++++++.||..
T Consensus 277 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~a--v~~~~~iyv~GG~~ 353 (376)
T PRK14131 277 YSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVS--VSWNNGVLLIGGET 353 (376)
T ss_pred eECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEE--EEeCCEEEEEcCCC
Confidence 45677777777541 2457888765532 222211112223 33367778877753
No 482
>PLN02153 epithiospecifier protein
Probab=90.48 E-value=17 Score=34.94 Aligned_cols=105 Identities=10% Similarity=0.208 Sum_probs=52.4
Q ss_pred CCCEEEEeeC--------CeEEEEEccCCeEEEeec-C--CC-c--cEEEEEEccCCCEEEEEecc-----CeEEEEECC
Q 005254 30 DGSFIACACG--------ESINIVDLSNASIKSTIE-G--GS-D--TITALALSPDDKLLFSSGHS-----REIRVWDLS 90 (706)
Q Consensus 30 dg~~l~~~~~--------~~i~i~d~~~~~~~~~l~-~--~~-~--~i~~l~~s~~~~~l~s~~~d-----~~i~iwd~~ 90 (706)
+++++++|+. +.+.+||+.+.+-...-. + .. . ...++++ ++++++.|+.+ ..+.+||.+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 4566666553 248899988765332111 1 01 0 1122222 46666676642 357888987
Q ss_pred CCeE--EEEeec---cCCCeEEEEECCCCCEEEEecCC-----------CcEEEEECCCCeE
Q 005254 91 TLKC--LRSWKG---HDGPAIGMACHPSGGLLATAGAD-----------RKVLVWDVDGGFC 136 (706)
Q Consensus 91 ~~~~--~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d-----------~~i~vw~~~~~~~ 136 (706)
+.+- +..+.. ........+..-+++..+.|+.+ ..+.+||..+.+-
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 171 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW 171 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence 7542 222210 11111222223356666776643 2477888877653
No 483
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.09 E-value=6 Score=41.15 Aligned_cols=71 Identities=23% Similarity=0.268 Sum_probs=45.6
Q ss_pred CCCCEEEEeeCCCcEEEEeCCC----ccEEEEE--ee--------------------cCCcEEEEEEcc----CCCEEEE
Q 005254 504 PNDSLVCTGSQDRTACVWRLPD----LVSVVTF--RG--------------------HKRGIWSVEFSP----VDQVVIT 553 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~--~~--------------------~~~~v~~~~~s~----~~~~l~~ 553 (706)
++...++++..||.+....... +...... .. ....+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667888888999888877654 2222111 11 123455666666 7789999
Q ss_pred ecCCCcEEEEEcCCCceEEEE
Q 005254 554 ASGDKTIKIWSISDGSCLKTF 574 (706)
Q Consensus 554 ~~~dg~i~iwd~~~~~~~~~~ 574 (706)
.+.|+++|+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999997665
No 484
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=89.89 E-value=25 Score=36.00 Aligned_cols=200 Identities=18% Similarity=0.189 Sum_probs=106.4
Q ss_pred eeeeccceEEcCCCCEEEEeeCC------eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCe---EEEE-
Q 005254 18 QFYGGGPLVVSSDGSFIACACGE------SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE---IRVW- 87 (706)
Q Consensus 18 ~~~~~~~~~~s~dg~~l~~~~~~------~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~---i~iw- 87 (706)
.+|.-+.++.|||++++|++.+. .+++.|+.+++.+-..- .+....++|.+|++.+.-...|.. =++|
T Consensus 127 ~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~ 204 (682)
T COG1770 127 DFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--TNTSGSFAWAADGKTLFYTRLDENHRPDKVWR 204 (682)
T ss_pred cceeeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--cccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence 45666789999999999999764 59999999998653222 234568899999988775544321 2233
Q ss_pred -ECCC----CeEEEEeeccCCCeEEEEECCCCCEEEEecC---CCcEEEEECCCCeEEEEe--eCCCCcEEEEEEcCCCC
Q 005254 88 -DLST----LKCLRSWKGHDGPAIGMACHPSGGLLATAGA---DRKVLVWDVDGGFCTHYF--KGHKGVVSSILFHPDTD 157 (706)
Q Consensus 88 -d~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~ 157 (706)
.+.+ -+++..-+. ..--.++.-+.+.++|+.... .+.+++.+.+........ ....+--..+.- .++
T Consensus 205 h~~gt~~~~d~lvyeE~d-~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh--~~d 281 (682)
T COG1770 205 HRLGTPGSSDELVYEEKD-DRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEH--GGD 281 (682)
T ss_pred EecCCCCCcceEEEEcCC-CcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeee--cCc
Confidence 2222 122222221 122334445556677766543 356777777654322111 111111111111 123
Q ss_pred ceEEEEEecCC-eEEEEECCC---CeeEEEeecccceEEEEEEecCCCEEEEEeCCC---EEEEEeCCCCcce
Q 005254 158 KSLLFSGSDDA-TVRVWDLLA---KKCVATLDKHFSRVTSMAITSDGSTLISAGRDK---VVNLWDLRDYSCK 223 (706)
Q Consensus 158 ~~~l~~~~~dg-~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~w~~~~~~~~ 223 (706)
. +++-...+| ..++..... ...-+.+-.|...+.--.|+--..+|+....++ .|++++.++++..
T Consensus 282 ~-f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 282 R-FYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred E-EEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 2 222223333 344443322 222234445666666666666566677665443 6777887765543
No 485
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.83 E-value=18 Score=35.88 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=60.0
Q ss_pred ccceEEcCCCCEEEEee-CCeEEEEEccCCeE--EEeec-----CCCccEEEEEEccCC------CEEEEEe--------
Q 005254 22 GGPLVVSSDGSFIACAC-GESINIVDLSNASI--KSTIE-----GGSDTITALALSPDD------KLLFSSG-------- 79 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~-~~~i~i~d~~~~~~--~~~l~-----~~~~~i~~l~~s~~~------~~l~s~~-------- 79 (706)
...|+|.|||++|++-- .+.|++++..++.. +..+. ........|+++|+- .+|....
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~ 111 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKE 111 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCC
Confidence 34899999999888876 47899998665432 22121 135678999999884 3444331
Q ss_pred --ccCeEEEEECCCC-------eE-EEEeec-cCCCeEEEEECCCCCEEEEecCC
Q 005254 80 --HSREIRVWDLSTL-------KC-LRSWKG-HDGPAIGMACHPSGGLLATAGAD 123 (706)
Q Consensus 80 --~d~~i~iwd~~~~-------~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d 123 (706)
....|.-|.+... +. +..+.. ....-..|+|.|||++.++.++.
T Consensus 112 ~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 112 LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234555555321 11 111211 01223468899999877766544
No 486
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=89.78 E-value=20 Score=34.62 Aligned_cols=39 Identities=10% Similarity=0.350 Sum_probs=19.5
Q ss_pred CEEEEECCCCeE--EEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 601 LVKLWTVRTGEC--IATYDKHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 601 ~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
.+.+||..+.+- +..+.. ..-...+..-++++++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~--~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQ--GLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCC--CceeeEEEEcCCEEEEEeccC
Confidence 456888776542 222211 111122334477778888765
No 487
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.72 E-value=9.9 Score=37.18 Aligned_cols=102 Identities=12% Similarity=0.062 Sum_probs=58.8
Q ss_pred ccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Q 005254 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF 140 (706)
Q Consensus 61 ~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 140 (706)
..|..+..++.|..+|-+|.+|.+..+=.+....-..++..+..|+|=.|+-+.+ +.+.+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss------------------- 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSS------------------- 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-eeccC-------------------
Confidence 4677788888998888888887665543222222222332223344433332222 11111
Q ss_pred eCCCCcEEEEEEcCCC--CceEEEEEecCCeEEEEECCCCeeEEEee
Q 005254 141 KGHKGVVSSILFHPDT--DKSLLFSGSDDATVRVWDLLAKKCVATLD 185 (706)
Q Consensus 141 ~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 185 (706)
..-.+...+|+|++ +. .+..-+.|..|++||+.+.+.+....
T Consensus 164 --~~ltl~Qa~WHP~S~~D~-hL~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 164 --TSLTLKQAAWHPSSILDP-HLVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred --CceeeeeccccCCccCCc-eEEEEecCcEEEEEecCCcchhhccC
Confidence 22235667888875 32 26666789999999998777665443
No 488
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.58 E-value=26 Score=35.59 Aligned_cols=143 Identities=20% Similarity=0.224 Sum_probs=75.1
Q ss_pred CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCC---eEEEEECCCCCE
Q 005254 40 ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP---AIGMACHPSGGL 116 (706)
Q Consensus 40 ~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---v~~~~~s~~~~~ 116 (706)
....++|. .|.++..+.........+..-++|.+++..+ ..+..+|+. |+.+......... =..+..-|+|++
T Consensus 128 ~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~ 203 (477)
T PF05935_consen 128 SYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNL 203 (477)
T ss_dssp EEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-E
T ss_pred ceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCE
Confidence 36888884 5666655543222222277789999887655 678888984 5655554422211 135677899998
Q ss_pred EEEecC-------------CCcEEEEECCCCeEEEEee--CCC-------------------------CcEEEEEEcCCC
Q 005254 117 LATAGA-------------DRKVLVWDVDGGFCTHYFK--GHK-------------------------GVVSSILFHPDT 156 (706)
Q Consensus 117 l~~~~~-------------d~~i~vw~~~~~~~~~~~~--~~~-------------------------~~v~~~~~~~~~ 156 (706)
|+.+.. .-.|..+| .+|+.+..+. .|- -.+.++.+.+..
T Consensus 204 L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~d 282 (477)
T PF05935_consen 204 LILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSD 282 (477)
T ss_dssp EEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTT
T ss_pred EEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCC
Confidence 887761 12366666 6777665532 110 137888888854
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEEEeeccc
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHF 188 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 188 (706)
+. +++++-.-..|...|..+++....+..+.
T Consensus 283 d~-iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 283 DS-IIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TE-EEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred Ce-EEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 43 45555555578888888888877775553
No 489
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=89.52 E-value=18 Score=33.86 Aligned_cols=61 Identities=16% Similarity=0.407 Sum_probs=45.8
Q ss_pred cCCCCEEEEeeCCeEEEEEccC--CeEEEeecCCCccEEEEEEccCCCEEEEEe-ccCeEEEEECC
Q 005254 28 SSDGSFIACACGESINIVDLSN--ASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLS 90 (706)
Q Consensus 28 s~dg~~l~~~~~~~i~i~d~~~--~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~-~d~~i~iwd~~ 90 (706)
.-++++|+.|++..+++.+... ++..+.+ +...|+++...+.-+.|++-+ ....++.+++.
T Consensus 10 ~~~~~~lL~GTe~Gly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 10 TCDGKWLLVGTEEGLYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred ccCCcEEEEEeCCceEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 3455799999999999999765 3344433 467999999999888877654 34569999984
No 490
>PLN02193 nitrile-specifier protein
Probab=89.43 E-value=26 Score=35.51 Aligned_cols=193 Identities=9% Similarity=0.010 Sum_probs=0.0
Q ss_pred CCeEEEEecCC-------CeEEEEEecCCCCCCCcccccceeEEEeecCc--ceEEEEEcCCCCEEEEeeCC-----CcE
Q 005254 453 LQNFLVSGSSD-------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK--DINSLAVAPNDSLVCTGSQD-----RTA 518 (706)
Q Consensus 453 ~~~~l~~~~~d-------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~d-----g~i 518 (706)
+..+++.|+.+ ..+..||+... .+........... ........-++.+.+.|+.+ ..+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~--------~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv 246 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETR--------TWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGF 246 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCC--------EEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccE
Q ss_pred EEEeCCCccEEEEEee---cCCcEEEEEEccCCCEEEEecCCCc-----EEEEEcCCCceEEEEe---ecccCEEEEEEE
Q 005254 519 CVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVITASGDKT-----IKIWSISDGSCLKTFE---GHTSSVLRASFL 587 (706)
Q Consensus 519 ~i~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~---~~~~~i~~~~~s 587 (706)
..||+.+.+-...-.. ....-...+..-++++.+.|+.++. +..||+.+.+-...-. ............
T Consensus 247 ~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~ 326 (470)
T PLN02193 247 YSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV 326 (470)
T ss_pred EEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE
Q ss_pred eCCCEEEEEeCC----CCEEEEECCCCeEEEEecc---CCCcEEEEEEcCCCCEEEEEeCCC--------------cEEE
Q 005254 588 TRGAQIVSCGAD----GLVKLWTVRTGECIATYDK---HEDKIWALAVGKKTEMFATGGSDA--------------LVNL 646 (706)
Q Consensus 588 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~v 646 (706)
.+++.++.++.+ ..+.+||+.+.+-...-.. .......-+..-++++++.|+.+. .+.+
T Consensus 327 ~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 327 VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEE
Q ss_pred EECCchh
Q 005254 647 WHDSTAA 653 (706)
Q Consensus 647 w~~~~~~ 653 (706)
||+.+..
T Consensus 407 ~D~~t~~ 413 (470)
T PLN02193 407 LDTETLQ 413 (470)
T ss_pred EEcCcCE
No 491
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.39 E-value=26 Score=35.49 Aligned_cols=151 Identities=15% Similarity=0.026 Sum_probs=77.1
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCc---EEEEEEccCCCEEEEec--------------CCCcEEE
Q 005254 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG---IWSVEFSPVDQVVITAS--------------GDKTIKI 562 (706)
Q Consensus 500 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~--------------~dg~i~i 562 (706)
+...++|.+++... ..+..+|+. |+.+....-.... =..+...|+|++|+.+. .| .|..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D-~Ive 228 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVED-VIVE 228 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S--EEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecC-EEEE
Confidence 56678898887655 778888875 5554443322211 24577888999888777 23 3666
Q ss_pred EEcCCCceEEEEee--cc-------------------------cCEEEEEEEe-CCCEEEEEeCCCCEEEEECCCCeEEE
Q 005254 563 WSISDGSCLKTFEG--HT-------------------------SSVLRASFLT-RGAQIVSCGADGLVKLWTVRTGECIA 614 (706)
Q Consensus 563 wd~~~~~~~~~~~~--~~-------------------------~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 614 (706)
.| .+|+.+..+.. |- -.++++.+.+ ++.+|+++-.-..|...|..+++...
T Consensus 229 vd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 229 VD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp E--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred EC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 66 67777665431 10 1378899988 44455555445588999988998887
Q ss_pred EeccCCCcEE-----EEEE----------------cCCCCEEEEEeCCC---cEEEEECCchhHH
Q 005254 615 TYDKHEDKIW-----ALAV----------------GKKTEMFATGGSDA---LVNLWHDSTAAER 655 (706)
Q Consensus 615 ~~~~~~~~v~-----~~~~----------------s~~~~~l~~~~~dg---~i~vw~~~~~~~~ 655 (706)
.+-.|.+.-. -+.+ -+-|++-+.--.+| .|.++|=......
T Consensus 308 ilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~r~~ 372 (477)
T PF05935_consen 308 ILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNGRGY 372 (477)
T ss_dssp EES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TTGGG
T ss_pred EeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCCCCC
Confidence 7754432110 0111 01244555555677 8888887655543
No 492
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.29 E-value=42 Score=37.62 Aligned_cols=105 Identities=11% Similarity=0.117 Sum_probs=52.9
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCc-cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSD-TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~-~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
.+++|+|..+++|.+... .|.+|....-+.......-.. .++.+.+-...........+..+.+|.......+.
T Consensus 39 ~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~---- 114 (993)
T KOG1983|consen 39 SALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF---- 114 (993)
T ss_pred cceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee----
Confidence 489999999999999876 899997654443332221111 12222222212222223334455555543221111
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDG 133 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 133 (706)
+...+++..-.+--.+ +.+ ..+.+++|++.-
T Consensus 115 ~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~ 145 (993)
T KOG1983|consen 115 LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLR 145 (993)
T ss_pred cCCcceeccCCCCcch-hcc-cCceeeEeeech
Confidence 2233333333332233 444 778888888753
No 493
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=88.91 E-value=6 Score=28.46 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=28.5
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG 79 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~ 79 (706)
.+.-||+.+++....+.+-. --+.+++++|+++|+.+-
T Consensus 38 Rll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 38 RLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp EEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEEE
T ss_pred CEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEEe
Confidence 59999999998765555533 348999999999888773
No 494
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.87 E-value=17 Score=32.72 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=88.2
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec--cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC---
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG--HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG--- 134 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~--- 134 (706)
..-+..+.++ +++...+..+.-++|.|+.+...-..+.. ..+--.++..+ |++..++..|.-+.+.|+.+.
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCc
Confidence 4456677777 55666777777899999987653332221 12334445555 778877775555778888654
Q ss_pred eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee---EEEeecccceEEEEEEecCCCEEEEEeCCCE
Q 005254 135 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC---VATLDKHFSRVTSMAITSDGSTLISAGRDKV 211 (706)
Q Consensus 135 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 211 (706)
.+..++......-..++.|- +. .+.+..|+-+.+-|+..... +.... ....+.++..+++..+++.. +--
T Consensus 162 ~lagrya~~~~d~~~v~ISG--n~--AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~eg 234 (370)
T COG5276 162 QLAGRYALPGGDTHDVAISG--NY--AYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--DEG 234 (370)
T ss_pred eeeeeeccCCCCceeEEEec--Ce--EEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc--ccc
Confidence 33444444555556677764 43 56666788899999865432 22221 12256677666664444433 333
Q ss_pred EEEEeCCCCc
Q 005254 212 VNLWDLRDYS 221 (706)
Q Consensus 212 i~~w~~~~~~ 221 (706)
+.+-|..+.+
T Consensus 235 vlivd~s~~s 244 (370)
T COG5276 235 VLIVDVSGPS 244 (370)
T ss_pred eEEEecCCCC
Confidence 5566655433
No 495
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=88.77 E-value=24 Score=34.11 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=28.1
Q ss_pred cCCCCEEEEeeC------------CeEEEEEccCCeEEEeecCCCccEEEE-EE-ccCCCEEEEEecc
Q 005254 28 SSDGSFIACACG------------ESINIVDLSNASIKSTIEGGSDTITAL-AL-SPDDKLLFSSGHS 81 (706)
Q Consensus 28 s~dg~~l~~~~~------------~~i~i~d~~~~~~~~~l~~~~~~i~~l-~~-s~~~~~l~s~~~d 81 (706)
.-++++.++|+. +.+..||+.+.+-...-........+. +. .-++++.+.|+.+
T Consensus 61 ~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 61 AIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 346777666653 247788988776433211111111111 12 3467777877653
No 496
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.71 E-value=2.3 Score=24.67 Aligned_cols=35 Identities=17% Similarity=0.344 Sum_probs=0.0
Q ss_pred EEeecCCCccEEEEEEccCCCEEE-EEecc--CeEEEE
Q 005254 53 KSTIEGGSDTITALALSPDDKLLF-SSGHS--REIRVW 87 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~-s~~~d--~~i~iw 87 (706)
+..+........+.+|||||++|+ ++..+ |.-.||
T Consensus 1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
No 497
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.43 E-value=28 Score=34.57 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=38.6
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeE--EEEee-----CCCCcEEEEEEcCCC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC--THYFK-----GHKGVVSSILFHPDT 156 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~-----~~~~~v~~~~~~~~~ 156 (706)
.-.....|+|.||+++|++--..|.|++++..++.. +..+. ........|+|+|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345667899999998777755469999998765532 21111 135678999999873
No 498
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=88.19 E-value=47 Score=36.81 Aligned_cols=143 Identities=6% Similarity=0.047 Sum_probs=78.2
Q ss_pred CEEEEeeC---------CCcEEEEeCCC-----ccE-----EEEE--eecCCcEEEEEEccCCCEEEEecCCCcEEEEEc
Q 005254 507 SLVCTGSQ---------DRTACVWRLPD-----LVS-----VVTF--RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (706)
Q Consensus 507 ~~l~~~~~---------dg~i~i~d~~~-----~~~-----~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 565 (706)
.+|++|.. .|.+.|||+-. +++ ++.+ +..+++|..++=- +| +|+++. ...|.||++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G-~l~~~~-GqKI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQ-GQKIIVRKL 1123 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-cc-EEEEcc-CcEEEEEEe
Confidence 57777753 37899998632 222 1111 1245667665532 34 455543 345999999
Q ss_pred CCC-ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC-eEEEEec--cCCCcEEEEEEcCCCC--EEEEEe
Q 005254 566 SDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG-ECIATYD--KHEDKIWALAVGKKTE--MFATGG 639 (706)
Q Consensus 566 ~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~--~~~~~v~~~~~s~~~~--~l~~~~ 639 (706)
+.. ..+.. .--.-++.-.....-+++|+.|+--..|.+.-.+.. ..+..+. ...-.+.++.|--||. +++++.
T Consensus 1124 ~r~~~ligV-aFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1124 DRDSELIGV-AFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred ccCCcceee-EEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence 433 33221 112223333333334556777766666666554332 2222221 2233567777766665 577888
Q ss_pred CCCcEEEEECCchh
Q 005254 640 SDALVNLWHDSTAA 653 (706)
Q Consensus 640 ~dg~i~vw~~~~~~ 653 (706)
.|+.|++|...++.
T Consensus 1203 a~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1203 ADRNIHVYMYAPEN 1216 (1366)
T ss_pred CCCcEEEEEeCCCC
Confidence 89999999877654
No 499
>PLN02153 epithiospecifier protein
Probab=87.56 E-value=28 Score=33.52 Aligned_cols=105 Identities=11% Similarity=0.076 Sum_probs=52.0
Q ss_pred CCCCEEEEeeCC-----------CcEEEEeCCCccEEEEEeec------CCcEEEEEEccCCCEEEEecCC---------
Q 005254 504 PNDSLVCTGSQD-----------RTACVWRLPDLVSVVTFRGH------KRGIWSVEFSPVDQVVITASGD--------- 557 (706)
Q Consensus 504 ~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~d--------- 557 (706)
-++++.+.|+.+ ..+.+||..+.+-.. +... .... +++. -++++++.++.+
T Consensus 136 ~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~-~~~~-~~~~iyv~GG~~~~~~~gG~~ 212 (341)
T PLN02153 136 DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGA-GFAV-VQGKIWVVYGFATSILPGGKS 212 (341)
T ss_pred ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcc-eEEE-ECCeEEEEeccccccccCCcc
Confidence 356777777754 247778877653322 1111 1111 1222 245655555432
Q ss_pred ----CcEEEEEcCCCceEEEEe-e--cccCEEEEEEEeCCCEEEEEeCC--------------CCEEEEECCCCe
Q 005254 558 ----KTIKIWSISDGSCLKTFE-G--HTSSVLRASFLTRGAQIVSCGAD--------------GLVKLWTVRTGE 611 (706)
Q Consensus 558 ----g~i~iwd~~~~~~~~~~~-~--~~~~i~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~ 611 (706)
..+.+||..+.+-...-. + ........+...+++.++.|+.. ..+..+|+.+.+
T Consensus 213 ~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 213 DYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred ceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 358889987664332211 0 11111112233456677777752 257788887665
No 500
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=87.12 E-value=32 Score=33.70 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=10.0
Q ss_pred cEEEEeCCCceEEE
Q 005254 422 SVRLWDSESRCCVG 435 (706)
Q Consensus 422 ~i~i~d~~~~~~~~ 435 (706)
.+.+||..+.+...
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 57888988766544
Done!