Query 005254
Match_columns 706
No_of_seqs 893 out of 3308
Neff 12.4
Searched_HMMs 29240
Date Mon Mar 25 20:01:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 2.9E-74 9.8E-79 599.9 82.9 555 24-648 21-577 (577)
2 1nr0_A Actin interacting prote 100.0 3.9E-75 1.3E-79 604.5 75.3 584 1-650 1-610 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 7.8E-70 2.7E-74 566.5 80.7 532 51-650 7-538 (577)
4 1pgu_A Actin interacting prote 100.0 8.6E-70 2.9E-74 571.9 68.7 573 1-652 1-615 (615)
5 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-68 6E-73 605.8 62.2 572 24-650 620-1248(1249)
6 1nr0_A Actin interacting prote 100.0 8E-66 2.7E-70 534.6 69.4 540 58-653 16-569 (611)
7 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-65 8.6E-70 580.0 59.8 543 53-654 608-1210(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 8.6E-62 3E-66 520.9 64.6 561 24-655 22-787 (902)
9 1pgu_A Actin interacting prote 100.0 8.2E-60 2.8E-64 496.0 64.2 522 57-653 15-574 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 3.1E-59 1E-63 501.2 56.9 519 56-655 13-736 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-52 3.6E-57 456.4 53.3 457 51-652 4-505 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 8.5E-51 2.9E-55 441.4 55.8 476 24-655 18-605 (814)
13 1vyh_C Platelet-activating fac 100.0 5.1E-47 1.7E-51 373.1 39.6 310 53-608 101-410 (410)
14 3ow8_A WD repeat-containing pr 100.0 2.2E-45 7.4E-50 348.0 43.4 290 347-650 26-320 (321)
15 3ow8_A WD repeat-containing pr 100.0 7.5E-45 2.6E-49 344.3 43.7 292 51-566 23-320 (321)
16 1got_B GT-beta; complex (GTP-b 100.0 1.6E-44 5.4E-49 346.4 45.9 290 50-564 45-340 (340)
17 1r5m_A SIR4-interacting protei 100.0 1.1E-44 3.7E-49 362.6 43.3 358 81-650 24-424 (425)
18 1r5m_A SIR4-interacting protei 100.0 7.1E-45 2.4E-49 363.8 41.7 356 41-608 26-424 (425)
19 1vyh_C Platelet-activating fac 100.0 7.9E-45 2.7E-49 357.5 40.4 288 347-649 102-409 (410)
20 4g56_B MGC81050 protein; prote 100.0 7.2E-45 2.5E-49 350.1 35.0 321 24-528 10-346 (357)
21 2ynn_A Coatomer subunit beta'; 100.0 1.7E-43 5.9E-48 333.3 43.0 295 51-473 4-302 (304)
22 1got_B GT-beta; complex (GTP-b 100.0 3.7E-43 1.3E-47 336.9 44.5 289 344-648 46-340 (340)
23 2pbi_B Guanine nucleotide-bind 100.0 2.7E-43 9.2E-48 339.1 43.4 290 51-564 55-354 (354)
24 3frx_A Guanine nucleotide-bind 100.0 7E-43 2.4E-47 331.4 44.8 297 51-568 8-318 (319)
25 2ynn_A Coatomer subunit beta'; 100.0 1.1E-42 3.7E-47 327.9 43.0 293 345-652 5-303 (304)
26 3iz6_a 40S ribosomal protein R 100.0 3E-44 1E-48 350.1 33.3 316 124-611 46-377 (380)
27 4g56_B MGC81050 protein; prote 100.0 6.5E-44 2.2E-48 343.5 34.5 249 394-658 92-350 (357)
28 3iz6_a 40S ribosomal protein R 100.0 4.9E-44 1.7E-48 348.6 32.7 309 39-527 45-377 (380)
29 4gqb_B Methylosome protein 50; 100.0 2.6E-43 9E-48 335.6 36.8 301 42-474 16-332 (344)
30 3vl1_A 26S proteasome regulato 100.0 9.8E-44 3.3E-48 354.2 35.1 346 62-651 58-419 (420)
31 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.6E-42 5.6E-47 332.9 42.0 327 50-532 5-342 (345)
32 3frx_A Guanine nucleotide-bind 100.0 4.1E-42 1.4E-46 326.1 43.7 293 343-652 7-318 (319)
33 4ery_A WD repeat-containing pr 100.0 5.9E-42 2E-46 325.5 44.0 297 50-472 13-311 (312)
34 4gqb_B Methylosome protein 50; 100.0 4.9E-43 1.7E-47 333.7 36.4 244 395-654 81-334 (344)
35 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.4E-42 8.2E-47 331.7 40.3 253 393-656 58-340 (345)
36 1gxr_A ESG1, transducin-like e 100.0 7.6E-42 2.6E-46 330.0 42.8 314 24-565 14-335 (337)
37 2pbi_B Guanine nucleotide-bind 100.0 9.1E-42 3.1E-46 328.4 43.0 289 345-648 56-354 (354)
38 1gxr_A ESG1, transducin-like e 100.0 5.1E-42 1.8E-46 331.2 41.1 321 59-607 8-335 (337)
39 2xzm_R RACK1; ribosome, transl 100.0 1.2E-41 4.1E-46 327.1 42.2 301 51-568 12-341 (343)
40 2pm9_A Protein WEB1, protein t 100.0 6E-44 2E-48 355.6 24.9 337 103-610 13-415 (416)
41 1erj_A Transcriptional repress 100.0 6.1E-41 2.1E-45 328.3 44.7 290 24-473 69-389 (393)
42 2hes_X YDR267CP; beta-propelle 100.0 5.8E-41 2E-45 319.9 40.7 298 48-525 2-328 (330)
43 2xzm_R RACK1; ribosome, transl 100.0 7.9E-41 2.7E-45 321.4 41.3 294 342-653 10-342 (343)
44 4ery_A WD repeat-containing pr 100.0 2.7E-40 9.1E-45 314.1 43.6 293 343-650 13-311 (312)
45 3vl1_A 26S proteasome regulato 100.0 1.1E-41 3.9E-46 339.3 35.7 342 23-567 60-419 (420)
46 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.4E-40 8.3E-45 331.3 45.5 325 91-652 107-443 (445)
47 2pm9_A Protein WEB1, protein t 100.0 1.6E-42 5.4E-47 345.3 29.0 336 21-526 14-415 (416)
48 1k32_A Tricorn protease; prote 100.0 2.7E-39 9.3E-44 356.8 57.1 521 24-653 19-639 (1045)
49 1erj_A Transcriptional repress 100.0 4.4E-40 1.5E-44 322.3 44.8 285 351-652 62-390 (393)
50 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.4E-40 2.2E-44 328.2 46.7 322 50-567 108-442 (445)
51 3v7d_B Cell division control p 100.0 7.8E-40 2.7E-44 330.2 46.7 346 93-649 112-461 (464)
52 3gre_A Serine/threonine-protei 100.0 6.2E-42 2.1E-46 342.6 30.6 373 25-606 33-437 (437)
53 2hes_X YDR267CP; beta-propelle 100.0 3.8E-40 1.3E-44 314.3 41.2 294 345-652 6-329 (330)
54 4aow_A Guanine nucleotide-bind 100.0 1.7E-39 5.8E-44 313.8 44.4 299 90-569 26-339 (340)
55 2j04_B YDR362CP, TAU91; beta p 100.0 3.5E-42 1.2E-46 343.8 25.1 352 52-608 126-516 (524)
56 4aow_A Guanine nucleotide-bind 100.0 2E-39 7E-44 313.3 42.4 248 391-653 81-339 (340)
57 3v7d_B Cell division control p 100.0 6.5E-39 2.2E-43 323.5 46.7 346 52-564 113-460 (464)
58 2j04_B YDR362CP, TAU91; beta p 100.0 9.1E-42 3.1E-46 340.8 24.0 362 92-652 124-518 (524)
59 3gre_A Serine/threonine-protei 100.0 4.2E-41 1.4E-45 336.6 28.8 379 67-648 34-437 (437)
60 3zwl_B Eukaryotic translation 100.0 5.4E-38 1.9E-42 307.4 45.1 305 343-654 22-349 (369)
61 1sq9_A Antiviral protein SKI8; 100.0 8.1E-39 2.8E-43 316.2 37.9 297 344-653 7-397 (397)
62 3zwl_B Eukaryotic translation 100.0 7.5E-38 2.6E-42 306.4 44.2 306 93-571 23-350 (369)
63 3dm0_A Maltose-binding peripla 100.0 4.9E-38 1.7E-42 332.4 43.1 294 344-650 373-692 (694)
64 3ei3_B DNA damage-binding prot 100.0 1E-38 3.4E-43 313.2 35.1 309 43-567 56-382 (383)
65 4a11_B DNA excision repair pro 100.0 8.4E-39 2.9E-43 317.8 33.3 364 41-609 24-405 (408)
66 3k26_A Polycomb protein EED; W 100.0 9.2E-39 3.2E-43 312.4 33.0 325 54-566 12-365 (366)
67 3odt_A Protein DOA1; ubiquitin 100.0 2.5E-37 8.6E-42 294.8 41.1 295 134-616 8-303 (313)
68 3dm0_A Maltose-binding peripla 100.0 1.5E-37 5.2E-42 328.7 42.9 294 93-566 373-692 (694)
69 1sq9_A Antiviral protein SKI8; 100.0 9.3E-38 3.2E-42 308.6 37.9 303 94-569 8-397 (397)
70 3ei3_B DNA damage-binding prot 100.0 1.7E-37 5.7E-42 304.5 39.1 289 344-651 64-382 (383)
71 3i2n_A WD repeat-containing pr 100.0 5.3E-38 1.8E-42 305.8 34.6 303 54-528 12-356 (357)
72 4gga_A P55CDC, cell division c 100.0 6.6E-37 2.3E-41 303.2 42.5 302 62-587 107-415 (420)
73 4a11_B DNA excision repair pro 100.0 1.3E-38 4.3E-43 316.6 29.9 356 123-650 22-404 (408)
74 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-39 4.7E-44 313.6 20.5 310 23-555 19-349 (588)
75 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-39 4.3E-44 313.9 20.0 322 58-598 13-350 (588)
76 4aez_A CDC20, WD repeat-contai 100.0 6.1E-37 2.1E-41 301.6 39.9 292 56-575 87-388 (401)
77 1k8k_C P40, ARP2/3 complex 41 100.0 3.3E-37 1.1E-41 301.9 37.6 293 351-655 6-365 (372)
78 1k8k_C P40, ARP2/3 complex 41 100.0 1E-37 3.5E-42 305.5 34.0 317 56-527 4-363 (372)
79 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-36 3.7E-41 290.4 39.5 289 344-657 9-302 (313)
80 4h5i_A Guanine nucleotide-exch 100.0 1.9E-37 6.5E-42 299.2 34.0 231 414-656 97-348 (365)
81 3k26_A Polycomb protein EED; W 100.0 1.1E-37 3.8E-42 304.7 32.5 289 348-651 13-366 (366)
82 1k32_A Tricorn protease; prote 100.0 1.4E-35 4.8E-40 327.2 52.3 481 24-611 57-639 (1045)
83 3i2n_A WD repeat-containing pr 100.0 3.1E-37 1.1E-41 300.3 34.1 294 347-653 12-355 (357)
84 3dwl_C Actin-related protein 2 100.0 4E-39 1.4E-43 315.6 20.8 347 56-565 7-377 (377)
85 4e54_B DNA damage-binding prot 100.0 8.2E-38 2.8E-42 311.0 28.8 308 52-571 111-434 (435)
86 4gga_A P55CDC, cell division c 100.0 5.6E-36 1.9E-40 296.5 41.3 280 357-655 109-399 (420)
87 2pm7_B Protein transport prote 100.0 2.1E-36 7.1E-41 283.8 34.9 249 391-651 4-285 (297)
88 4aez_A CDC20, WD repeat-contai 100.0 4.7E-36 1.6E-40 295.3 38.9 276 367-658 104-387 (401)
89 4e54_B DNA damage-binding prot 100.0 1.4E-37 4.7E-42 309.4 28.0 293 348-655 114-434 (435)
90 4ggc_A P55CDC, cell division c 100.0 2.9E-35 1E-39 281.1 42.0 283 63-569 28-317 (318)
91 4h5i_A Guanine nucleotide-exch 100.0 1.2E-36 4E-41 293.7 31.8 293 60-568 14-344 (365)
92 1p22_A F-BOX/WD-repeat protein 100.0 7.7E-36 2.6E-40 297.3 36.1 282 351-658 131-421 (435)
93 3dwl_C Actin-related protein 2 100.0 2.4E-37 8.2E-42 303.0 24.2 284 352-649 10-377 (377)
94 2pm7_B Protein transport prote 100.0 9.7E-36 3.3E-40 279.3 33.7 264 54-473 3-285 (297)
95 4ggc_A P55CDC, cell division c 100.0 2.4E-34 8.2E-39 274.8 41.4 277 357-652 29-316 (318)
96 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-34 4.2E-39 288.6 36.9 276 56-475 129-416 (435)
97 3bg1_A Protein SEC13 homolog; 100.0 1.1E-35 3.8E-40 281.5 26.7 267 54-472 7-292 (316)
98 3bg1_A Protein SEC13 homolog; 100.0 4.7E-36 1.6E-40 284.0 24.1 248 391-650 8-292 (316)
99 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-34 4.8E-39 281.2 34.2 312 96-574 5-344 (351)
100 3jrp_A Fusion protein of prote 100.0 7.9E-34 2.7E-38 278.9 36.3 258 50-474 1-288 (379)
101 3f3f_A Nucleoporin SEH1; struc 100.0 5.1E-34 1.7E-38 277.2 34.4 302 53-533 4-345 (351)
102 3mmy_A MRNA export factor; mRN 100.0 5.2E-34 1.8E-38 279.0 34.7 299 86-566 23-345 (368)
103 1yfq_A Cell cycle arrest prote 100.0 6.3E-34 2.2E-38 274.9 34.4 282 349-643 7-315 (342)
104 1yfq_A Cell cycle arrest prote 100.0 6.7E-34 2.3E-38 274.7 34.4 285 53-471 4-322 (342)
105 3mmy_A MRNA export factor; mRN 100.0 4E-34 1.4E-38 279.8 32.1 300 128-607 23-344 (368)
106 2w18_A PALB2, fancn, partner a 100.0 5.5E-33 1.9E-37 250.5 36.4 177 462-649 155-355 (356)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 5.6E-34 1.9E-38 281.0 31.6 195 24-220 39-255 (402)
108 3jrp_A Fusion protein of prote 100.0 1.5E-33 5E-38 276.9 33.5 253 387-651 2-287 (379)
109 3dw8_B Serine/threonine-protei 100.0 1.1E-33 3.6E-38 284.4 32.5 282 351-649 26-444 (447)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 1.7E-34 5.9E-39 284.6 25.7 280 359-653 40-344 (402)
111 3dw8_B Serine/threonine-protei 100.0 3.2E-33 1.1E-37 281.0 35.4 282 23-332 32-443 (447)
112 1l0q_A Surface layer protein; 100.0 3.5E-31 1.2E-35 260.6 48.0 337 115-642 3-372 (391)
113 2xyi_A Probable histone-bindin 100.0 2.4E-33 8.1E-38 278.2 32.7 261 390-655 122-414 (430)
114 3vu4_A KMHSV2; beta-propeller 100.0 5.3E-33 1.8E-37 267.5 33.3 230 406-654 66-339 (355)
115 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.9E-33 3E-37 276.3 35.9 205 23-228 8-280 (450)
116 3bws_A Protein LP49; two-domai 100.0 1.7E-31 5.8E-36 266.9 44.6 240 394-650 167-431 (433)
117 3bws_A Protein LP49; two-domai 100.0 4.8E-31 1.7E-35 263.6 46.2 321 61-567 61-432 (433)
118 3vu4_A KMHSV2; beta-propeller 100.0 6.4E-32 2.2E-36 259.9 36.2 313 44-525 3-336 (355)
119 2w18_A PALB2, fancn, partner a 100.0 1.6E-31 5.5E-36 241.0 34.6 176 419-607 155-355 (356)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 9.7E-32 3.3E-36 268.8 34.9 286 354-652 5-392 (450)
121 2xyi_A Probable histone-bindin 100.0 1.2E-31 4.3E-36 265.9 34.0 253 54-474 122-411 (430)
122 1l0q_A Surface layer protein; 100.0 3.4E-30 1.2E-34 253.6 41.2 270 367-654 3-278 (391)
123 1nir_A Nitrite reductase; hemo 100.0 2.9E-30 1E-34 260.5 41.5 341 24-535 142-524 (543)
124 1nir_A Nitrite reductase; hemo 100.0 4.6E-30 1.6E-34 259.1 42.4 336 67-577 144-524 (543)
125 4gq1_A NUP37; propeller, trans 100.0 1.6E-32 5.4E-37 268.2 22.8 287 101-566 88-388 (393)
126 3jro_A Fusion protein of prote 100.0 3.4E-32 1.2E-36 288.6 26.7 250 390-651 3-285 (753)
127 3jro_A Fusion protein of prote 100.0 2.2E-32 7.7E-37 290.0 24.8 255 53-431 2-286 (753)
128 4gq1_A NUP37; propeller, trans 100.0 1.9E-31 6.5E-36 260.6 29.0 233 406-650 96-388 (393)
129 3lrv_A PRE-mRNA-splicing facto 100.0 5.5E-31 1.9E-35 253.0 28.9 212 378-607 106-331 (343)
130 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-31 5.2E-36 257.0 24.7 262 365-650 47-332 (343)
131 2ecf_A Dipeptidyl peptidase IV 100.0 9.2E-28 3.2E-32 257.1 37.5 355 60-610 36-460 (741)
132 2ecf_A Dipeptidyl peptidase IV 100.0 4E-27 1.4E-31 252.1 34.6 318 24-526 41-460 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.6E-27 1.6E-31 230.6 31.8 223 392-633 174-410 (415)
134 2hqs_A Protein TOLB; TOLB, PAL 100.0 7.8E-27 2.7E-31 229.0 31.5 301 103-590 63-409 (415)
135 1xfd_A DIP, dipeptidyl aminope 100.0 2E-27 6.9E-32 253.8 24.7 359 62-614 18-448 (723)
136 2z3z_A Dipeptidyl aminopeptida 100.0 1.7E-25 5.8E-30 238.0 35.8 353 24-564 30-473 (706)
137 2z3z_A Dipeptidyl aminopeptida 100.0 1.4E-25 4.6E-30 238.7 34.6 348 63-611 28-437 (706)
138 1xfd_A DIP, dipeptidyl aminope 99.9 4.8E-26 1.7E-30 243.2 28.5 195 23-221 20-291 (723)
139 3u4y_A Uncharacterized protein 99.9 8.4E-24 2.9E-28 202.6 37.1 195 25-222 3-210 (331)
140 3u4y_A Uncharacterized protein 99.9 3.4E-24 1.1E-28 205.4 33.9 277 361-653 5-306 (331)
141 3vgz_A Uncharacterized protein 99.9 6.8E-23 2.3E-27 198.5 37.9 277 60-516 40-335 (353)
142 3vgz_A Uncharacterized protein 99.9 9.3E-23 3.2E-27 197.5 36.8 271 354-641 41-334 (353)
143 1z68_A Fibroblast activation p 99.9 2E-24 6.9E-29 230.1 25.1 208 1-216 1-284 (719)
144 1pby_B Quinohemoprotein amine 99.9 2.4E-23 8.1E-28 200.4 29.8 268 367-654 2-313 (337)
145 1pby_B Quinohemoprotein amine 99.9 2.1E-22 7E-27 193.8 34.6 171 32-208 2-193 (337)
146 1ri6_A Putative isomerase YBHE 99.9 6.5E-23 2.2E-27 197.8 30.5 270 368-650 7-307 (343)
147 1ri6_A Putative isomerase YBHE 99.9 1.7E-22 5.7E-27 195.0 32.7 299 115-591 5-335 (343)
148 2ojh_A Uncharacterized protein 99.9 1.3E-23 4.4E-28 198.3 23.6 255 372-642 18-293 (297)
149 1z68_A Fibroblast activation p 99.9 3.9E-23 1.3E-27 220.1 25.9 358 65-575 20-451 (719)
150 2oit_A Nucleoporin 214KDA; NH2 99.9 6E-22 2E-26 194.5 30.1 197 22-221 39-280 (434)
151 3hfq_A Uncharacterized protein 99.9 8E-21 2.7E-25 183.0 34.1 265 376-650 16-316 (347)
152 2ojh_A Uncharacterized protein 99.9 5.9E-22 2E-26 186.9 25.1 174 40-218 22-203 (297)
153 3o4h_A Acylamino-acid-releasin 99.9 6.8E-22 2.3E-26 204.7 26.2 271 60-525 21-315 (582)
154 3o4h_A Acylamino-acid-releasin 99.9 9.3E-22 3.2E-26 203.7 26.9 271 353-651 21-315 (582)
155 4a5s_A Dipeptidyl peptidase 4 99.9 1.4E-20 4.7E-25 200.0 35.9 363 62-575 18-457 (740)
156 1jmx_B Amine dehydrogenase; ox 99.9 7.6E-21 2.6E-25 183.8 30.6 158 64-227 3-183 (349)
157 3hfq_A Uncharacterized protein 99.9 1.4E-19 4.9E-24 174.2 38.8 175 41-218 17-217 (347)
158 3scy_A Hypothetical bacterial 99.9 6.2E-20 2.1E-24 177.7 35.4 187 442-629 155-360 (361)
159 2oit_A Nucleoporin 214KDA; NH2 99.9 9.7E-22 3.3E-26 193.0 22.6 222 421-652 23-279 (434)
160 4a5s_A Dipeptidyl peptidase 4 99.9 1.1E-19 3.8E-24 193.0 38.4 193 24-221 21-296 (740)
161 1jmx_B Amine dehydrogenase; ox 99.9 5.7E-20 1.9E-24 177.6 32.3 274 364-654 9-328 (349)
162 3scy_A Hypothetical bacterial 99.9 1.6E-19 5.6E-24 174.8 32.7 267 375-651 26-337 (361)
163 2oiz_A Aromatic amine dehydrog 99.9 1.6E-19 5.4E-24 173.0 30.8 299 112-591 13-360 (361)
164 3pe7_A Oligogalacturonate lyas 99.9 1.1E-19 3.7E-24 178.3 30.1 175 42-219 12-225 (388)
165 2oiz_A Aromatic amine dehydrog 99.9 9.8E-19 3.4E-23 167.5 32.8 303 29-454 13-360 (361)
166 1jof_A Carboxy-CIS,CIS-muconat 99.9 4.3E-19 1.5E-23 171.5 30.1 264 376-652 14-342 (365)
167 3pe7_A Oligogalacturonate lyas 99.9 7.1E-19 2.4E-23 172.5 30.5 120 84-205 12-141 (388)
168 3c5m_A Oligogalacturonate lyas 99.8 1.4E-19 4.7E-24 178.4 22.3 318 84-612 12-387 (396)
169 1qks_A Cytochrome CD1 nitrite 99.8 2.8E-16 9.7E-21 157.7 45.1 333 70-576 165-547 (567)
170 1qks_A Cytochrome CD1 nitrite 99.8 8.2E-17 2.8E-21 161.6 40.8 238 408-655 253-542 (567)
171 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.8E-18 9.4E-23 165.8 25.8 236 23-284 43-342 (365)
172 3c5m_A Oligogalacturonate lyas 99.8 2.5E-18 8.4E-23 169.4 23.9 284 23-334 39-381 (396)
173 3azo_A Aminopeptidase; POP fam 99.8 2.4E-18 8.1E-23 181.5 23.3 152 54-209 17-208 (662)
174 3fvz_A Peptidyl-glycine alpha- 99.8 8.4E-17 2.9E-21 152.6 30.8 241 397-651 24-322 (329)
175 2gop_A Trilobed protease; beta 99.8 1.3E-16 4.4E-21 153.6 30.4 168 24-209 19-235 (347)
176 1q7f_A NHL, brain tumor CG1071 99.8 4E-16 1.4E-20 145.3 32.1 238 395-652 28-281 (286)
177 3azo_A Aminopeptidase; POP fam 99.8 2.6E-17 8.9E-22 173.6 26.7 295 349-653 19-371 (662)
178 4a2l_A BT_4663, two-component 99.8 5.5E-12 1.9E-16 135.2 66.5 562 24-649 47-657 (795)
179 3fvz_A Peptidyl-glycine alpha- 99.8 1.4E-16 4.6E-21 151.2 27.3 235 24-283 28-322 (329)
180 1q7f_A NHL, brain tumor CG1071 99.8 3.8E-15 1.3E-19 138.7 32.4 230 23-283 33-280 (286)
181 2xdw_A Prolyl endopeptidase; a 99.7 3.7E-15 1.3E-19 157.7 34.8 188 29-220 81-321 (710)
182 3e5z_A Putative gluconolactona 99.7 2.9E-15 1E-19 140.1 30.3 238 394-653 25-288 (296)
183 2gop_A Trilobed protease; beta 99.7 2.6E-15 8.9E-20 144.5 29.9 242 375-650 42-330 (347)
184 2dg1_A DRP35, lactonase; beta 99.7 5.5E-15 1.9E-19 141.2 30.3 265 356-641 8-300 (333)
185 4a2l_A BT_4663, two-component 99.7 2.1E-11 7E-16 130.8 61.0 524 24-608 92-658 (795)
186 3dsm_A Uncharacterized protein 99.7 9.3E-15 3.2E-19 138.2 30.4 258 375-653 16-303 (328)
187 2bkl_A Prolyl endopeptidase; m 99.7 1.3E-15 4.5E-20 160.5 27.0 186 28-219 76-304 (695)
188 3no2_A Uncharacterized protein 99.7 6.1E-15 2.1E-19 134.6 27.7 211 412-639 6-231 (276)
189 3sjl_D Methylamine dehydrogena 99.7 3.9E-14 1.3E-18 132.3 32.5 119 107-227 37-177 (386)
190 3v9f_A Two-component system se 99.7 6.6E-10 2.3E-14 118.9 69.3 572 24-651 23-656 (781)
191 3e5z_A Putative gluconolactona 99.7 8.9E-15 3.1E-19 136.8 28.1 209 24-241 32-268 (296)
192 3sjl_D Methylamine dehydrogena 99.7 2.6E-14 8.9E-19 133.5 30.6 147 66-219 38-208 (386)
193 2mad_H Methylamine dehydrogena 99.7 4.6E-13 1.6E-17 127.9 40.1 115 109-228 27-166 (373)
194 2mad_H Methylamine dehydrogena 99.7 4.2E-13 1.4E-17 128.2 39.6 186 26-220 27-244 (373)
195 2xdw_A Prolyl endopeptidase; a 99.7 1.7E-14 5.7E-19 152.6 32.2 244 397-653 125-416 (710)
196 2z2n_A Virginiamycin B lyase; 99.7 5.2E-13 1.8E-17 125.4 38.7 279 353-653 14-297 (299)
197 2dg1_A DRP35, lactonase; beta 99.7 2.5E-14 8.6E-19 136.6 29.8 153 61-218 6-170 (333)
198 1rwi_B Serine/threonine-protei 99.7 8E-15 2.7E-19 135.3 24.5 241 398-654 25-267 (270)
199 3dsm_A Uncharacterized protein 99.7 5.8E-14 2E-18 132.7 29.3 196 40-241 17-236 (328)
200 1xip_A Nucleoporin NUP159; bet 99.7 1.4E-13 4.9E-18 129.3 31.3 172 22-207 40-232 (388)
201 3no2_A Uncharacterized protein 99.7 6.6E-14 2.3E-18 127.7 28.2 192 29-228 3-204 (276)
202 2z2n_A Virginiamycin B lyase; 99.7 2.2E-12 7.4E-17 121.1 39.2 189 23-217 18-211 (299)
203 1rwi_B Serine/threonine-protei 99.7 4E-14 1.4E-18 130.6 24.8 237 22-284 26-265 (270)
204 3v9f_A Two-component system se 99.7 1.3E-09 4.3E-14 116.7 62.8 529 60-651 18-611 (781)
205 4a0p_A LRP6, LRP-6, low-densit 99.6 4.8E-09 1.6E-13 107.0 69.7 519 31-617 6-557 (628)
206 1yr2_A Prolyl oligopeptidase; 99.6 2E-13 6.7E-18 145.0 32.2 186 28-218 115-349 (741)
207 2bkl_A Prolyl endopeptidase; m 99.6 2.2E-14 7.4E-19 151.2 22.8 262 378-653 96-399 (695)
208 3c75_H MADH, methylamine dehyd 99.6 4.1E-13 1.4E-17 128.2 28.9 114 112-227 82-217 (426)
209 3c75_H MADH, methylamine dehyd 99.6 4.4E-13 1.5E-17 128.0 29.1 185 29-220 82-296 (426)
210 3s94_A LRP-6, low-density lipo 99.6 1E-08 3.5E-13 104.5 60.9 515 31-611 9-553 (619)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.3E-12 4.4E-17 123.6 29.2 240 399-651 20-299 (314)
212 3g4e_A Regucalcin; six bladed 99.6 6.7E-12 2.3E-16 116.9 33.4 220 406-640 20-261 (297)
213 2qc5_A Streptogramin B lactona 99.6 2.6E-11 8.8E-16 113.8 37.3 274 353-649 19-298 (300)
214 1yr2_A Prolyl oligopeptidase; 99.6 1.6E-12 5.6E-17 137.9 29.2 241 398-653 164-443 (741)
215 2qc5_A Streptogramin B lactona 99.6 7.8E-11 2.7E-15 110.5 37.7 189 23-217 23-216 (300)
216 1xip_A Nucleoporin NUP159; bet 99.6 1.4E-13 4.7E-18 129.4 18.2 181 442-637 38-230 (388)
217 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.4E-11 4.9E-16 116.3 31.5 234 23-283 21-299 (314)
218 3q7m_A Lipoprotein YFGL, BAMB; 99.5 2E-11 6.7E-16 118.5 32.4 298 31-470 53-375 (376)
219 4a0p_A LRP6, LRP-6, low-densit 99.5 4.8E-08 1.6E-12 99.7 65.4 501 24-576 41-558 (628)
220 3s94_A LRP-6, low-density lipo 99.5 2.2E-08 7.6E-13 102.0 55.6 498 23-569 43-553 (619)
221 3hrp_A Uncharacterized protein 99.5 8.2E-12 2.8E-16 121.2 28.9 194 24-222 135-357 (409)
222 3hrp_A Uncharacterized protein 99.5 3.1E-11 1E-15 117.2 32.0 237 398-650 132-409 (409)
223 1kb0_A Quinohemoprotein alcoho 99.5 2.1E-11 7.3E-16 126.3 31.3 269 367-651 129-567 (677)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.5 8.5E-11 2.9E-15 114.0 33.8 307 72-522 53-375 (376)
225 2ghs_A AGR_C_1268P; regucalcin 99.5 1.5E-10 5.2E-15 109.2 33.9 216 406-640 56-291 (326)
226 3dr2_A Exported gluconolactona 99.5 2.7E-11 9.2E-16 113.3 28.0 224 398-643 46-299 (305)
227 1yiq_A Quinohemoprotein alcoho 99.5 3.2E-11 1.1E-15 125.3 31.2 259 367-638 122-536 (689)
228 1yiq_A Quinohemoprotein alcoho 99.5 4.6E-11 1.6E-15 124.1 31.7 378 30-462 70-538 (689)
229 3g4e_A Regucalcin; six bladed 99.5 2.9E-10 1E-14 105.7 34.1 226 355-598 14-261 (297)
230 3hxj_A Pyrrolo-quinoline quino 99.5 1.8E-12 6.3E-17 123.5 18.1 218 414-654 110-327 (330)
231 1mda_H Methylamine dehydrogena 99.5 9.4E-12 3.2E-16 117.0 22.2 164 41-219 47-240 (368)
232 1kb0_A Quinohemoprotein alcoho 99.4 1.5E-10 5E-15 120.1 31.6 193 30-228 77-355 (677)
233 1mda_H Methylamine dehydrogena 99.4 2.2E-11 7.4E-16 114.5 22.3 294 159-586 33-364 (368)
234 3hxj_A Pyrrolo-quinoline quino 99.4 9.2E-12 3.2E-16 118.6 20.1 184 23-222 23-206 (330)
235 3iuj_A Prolyl endopeptidase; h 99.4 3.2E-11 1.1E-15 126.7 25.3 191 24-221 133-361 (693)
236 2ghs_A AGR_C_1268P; regucalcin 99.4 1.3E-09 4.5E-14 102.7 32.2 223 357-599 52-292 (326)
237 3iuj_A Prolyl endopeptidase; h 99.4 1.2E-10 4.2E-15 122.2 26.5 242 395-653 127-407 (693)
238 3dr2_A Exported gluconolactona 99.4 1.7E-10 5.7E-15 107.9 24.8 208 24-242 49-289 (305)
239 2qe8_A Uncharacterized protein 99.3 4.4E-10 1.5E-14 106.9 26.1 116 103-221 17-156 (343)
240 2qe8_A Uncharacterized protein 99.3 3E-10 1E-14 108.1 23.2 196 24-221 21-280 (343)
241 1npe_A Nidogen, entactin; glyc 99.3 2.2E-08 7.4E-13 91.5 33.8 249 369-633 4-263 (267)
242 2hz6_A Endoplasmic reticulum t 99.3 8.8E-13 3E-17 126.4 4.1 192 30-232 8-205 (369)
243 2ece_A 462AA long hypothetical 99.3 8.6E-09 2.9E-13 96.9 29.6 220 408-639 93-399 (462)
244 2ece_A 462AA long hypothetical 99.3 5.1E-09 1.8E-13 98.4 27.7 201 26-228 88-364 (462)
245 2hz6_A Endoplasmic reticulum t 99.3 3E-12 1E-16 122.7 6.1 203 409-633 8-216 (369)
246 1npe_A Nidogen, entactin; glyc 99.3 6.7E-08 2.3E-12 88.2 34.1 185 31-218 1-197 (267)
247 1kv9_A Type II quinohemoprotei 99.2 9.8E-09 3.4E-13 106.4 31.1 257 367-639 118-520 (668)
248 2iwa_A Glutamine cyclotransfer 99.2 3.4E-09 1.2E-13 93.5 23.3 188 24-219 25-237 (266)
249 1fwx_A Nitrous oxide reductase 99.2 1.3E-09 4.6E-14 106.3 22.4 232 408-653 99-433 (595)
250 1kv9_A Type II quinohemoprotei 99.2 1.9E-08 6.5E-13 104.3 31.3 370 30-461 66-520 (668)
251 1w6s_A Methanol dehydrogenase 99.2 8.4E-08 2.9E-12 96.9 31.7 134 504-638 318-534 (599)
252 2iwa_A Glutamine cyclotransfer 99.1 3.8E-08 1.3E-12 86.9 25.5 206 50-284 9-238 (266)
253 2ad6_A Methanol dehydrogenase 99.1 1E-07 3.5E-12 96.6 31.2 252 368-636 117-522 (571)
254 1w6s_A Methanol dehydrogenase 99.1 3.4E-07 1.2E-11 92.4 34.6 371 30-460 62-534 (599)
255 1flg_A Protein (quinoprotein e 99.1 3.3E-07 1.1E-11 92.9 33.9 134 504-638 331-547 (582)
256 1fwx_A Nitrous oxide reductase 99.1 8.7E-09 3E-13 100.7 21.2 191 24-219 89-361 (595)
257 3ei3_A DNA damage-binding prot 99.1 4.1E-05 1.4E-09 83.7 62.6 510 38-606 490-1059(1158)
258 3nol_A Glutamine cyclotransfer 99.1 6.1E-08 2.1E-12 84.2 23.2 180 444-640 45-244 (262)
259 1flg_A Protein (quinoprotein e 99.1 6.1E-07 2.1E-11 90.9 33.8 375 30-461 68-548 (582)
260 3nol_A Glutamine cyclotransfer 99.1 2.6E-08 8.8E-13 86.5 20.0 178 24-209 47-245 (262)
261 3mbr_X Glutamine cyclotransfer 99.0 2.2E-07 7.6E-12 80.0 23.7 175 25-208 26-223 (243)
262 2ad6_A Methanol dehydrogenase 99.0 2E-07 6.8E-12 94.5 27.6 275 366-656 62-499 (571)
263 3nok_A Glutaminyl cyclase; bet 99.0 3.1E-07 1E-11 79.7 22.6 180 443-639 56-253 (268)
264 3nok_A Glutaminyl cyclase; bet 98.9 8.8E-08 3E-12 83.1 18.5 174 25-208 60-254 (268)
265 3mbr_X Glutamine cyclotransfer 98.9 1.6E-06 5.5E-11 74.7 25.5 181 442-640 21-223 (243)
266 3v64_C Agrin; beta propeller, 98.9 7.2E-06 2.4E-10 77.5 31.2 235 368-617 46-283 (349)
267 3v65_B Low-density lipoprotein 98.9 7.1E-06 2.4E-10 78.8 31.0 246 368-628 89-337 (386)
268 1ijq_A LDL receptor, low-densi 98.9 3.1E-05 1.1E-09 72.1 34.5 226 376-617 10-246 (316)
269 3v64_C Agrin; beta propeller, 98.9 1.7E-05 5.9E-10 74.9 33.0 192 24-218 38-233 (349)
270 3qqz_A Putative uncharacterize 98.8 2.4E-06 8.3E-11 75.0 24.8 191 23-217 30-251 (255)
271 2fp8_A Strictosidine synthase; 98.8 4.8E-06 1.6E-10 78.3 28.7 232 406-652 26-314 (322)
272 2fp8_A Strictosidine synthase; 98.8 6.1E-06 2.1E-10 77.6 29.1 201 20-226 19-275 (322)
273 3p5b_L Low density lipoprotein 98.8 8.4E-05 2.9E-09 71.6 35.8 246 368-628 85-339 (400)
274 3p5b_L Low density lipoprotein 98.8 7.3E-05 2.5E-09 72.1 34.3 186 31-218 83-276 (400)
275 1ijq_A LDL receptor, low-densi 98.7 9E-05 3.1E-09 68.9 33.6 185 32-219 2-195 (316)
276 3v65_B Low-density lipoprotein 98.7 3.4E-05 1.2E-09 74.1 31.1 222 353-587 115-338 (386)
277 2xe4_A Oligopeptidase B; hydro 98.7 1.6E-06 5.4E-11 91.7 23.7 191 21-217 175-398 (751)
278 3qqz_A Putative uncharacterize 98.7 1.8E-05 6E-10 69.6 25.6 199 437-648 22-250 (255)
279 3sov_A LRP-6, low-density lipo 98.7 3.3E-05 1.1E-09 71.6 29.0 230 375-617 12-246 (318)
280 2p4o_A Hypothetical protein; p 98.6 7E-05 2.4E-09 69.6 29.0 223 399-641 34-278 (306)
281 1k3i_A Galactose oxidase precu 98.6 3E-06 1E-10 88.3 21.5 114 65-180 190-326 (656)
282 2p4o_A Hypothetical protein; p 98.6 0.0002 6.9E-09 66.4 30.9 138 410-558 127-279 (306)
283 1k3i_A Galactose oxidase precu 98.6 2.8E-06 9.6E-11 88.5 19.8 273 358-640 190-530 (656)
284 3ott_A Two-component system se 98.5 0.0017 5.8E-08 69.1 60.6 515 24-652 26-587 (758)
285 3tc9_A Hypothetical hydrolase; 98.5 0.00019 6.5E-09 69.9 29.9 232 406-650 144-429 (430)
286 3ott_A Two-component system se 98.5 0.0022 7.5E-08 68.3 61.7 523 24-650 67-625 (758)
287 3tc9_A Hypothetical hydrolase; 98.5 0.0001 3.5E-09 71.8 27.5 150 23-176 140-300 (430)
288 3sov_A LRP-6, low-density lipo 98.5 0.00057 1.9E-08 63.3 31.0 219 355-586 36-257 (318)
289 3m0c_C LDL receptor, low-densi 98.5 0.00044 1.5E-08 72.3 33.1 228 374-616 402-639 (791)
290 3m0c_C LDL receptor, low-densi 98.4 0.00038 1.3E-08 72.8 31.5 185 31-217 395-587 (791)
291 3amr_A 3-phytase; beta-propell 98.4 0.00025 8.4E-09 64.7 25.2 191 30-227 39-272 (355)
292 4hw6_A Hypothetical protein, I 98.4 0.00038 1.3E-08 67.8 28.4 230 406-650 146-432 (433)
293 4hw6_A Hypothetical protein, I 98.4 0.00025 8.7E-09 68.9 26.8 191 23-217 142-372 (433)
294 2xzh_A Clathrin heavy chain 1; 98.4 0.0011 3.9E-08 58.9 32.3 203 22-228 69-299 (365)
295 3kya_A Putative phosphatase; s 98.4 0.00045 1.6E-08 67.1 27.2 252 399-659 141-483 (496)
296 3ei3_A DNA damage-binding prot 98.3 0.0066 2.3E-07 66.7 72.1 570 23-652 330-1000(1158)
297 3amr_A 3-phytase; beta-propell 98.3 0.00042 1.5E-08 63.2 25.0 198 414-617 43-272 (355)
298 1bpo_A Protein (clathrin); cla 98.3 0.0027 9.3E-08 59.1 31.0 202 22-227 68-297 (494)
299 2xe4_A Oligopeptidase B; hydro 98.2 6.3E-05 2.1E-09 79.5 19.9 192 443-648 175-395 (751)
300 2xbg_A YCF48-like protein; pho 98.2 0.0043 1.5E-07 57.9 31.3 268 354-648 36-319 (327)
301 3kya_A Putative phosphatase; s 98.2 0.0036 1.2E-07 60.8 28.7 253 355-613 140-479 (496)
302 1n7d_A LDL receptor, low-densi 98.2 1.1E-05 3.9E-10 83.7 12.2 240 375-629 385-634 (699)
303 2xbg_A YCF48-like protein; pho 98.1 0.00096 3.3E-08 62.3 23.5 184 25-217 127-320 (327)
304 2xzh_A Clathrin heavy chain 1; 98.1 0.0058 2E-07 54.6 29.9 162 406-569 159-334 (365)
305 2ism_A Putative oxidoreductase 98.0 0.0038 1.3E-07 58.9 25.7 97 23-121 34-153 (352)
306 2vpj_A Kelch-like protein 12; 98.0 0.0014 4.7E-08 60.7 21.7 220 421-652 31-279 (301)
307 3pbp_A Nucleoporin NUP82; beta 98.0 0.0004 1.4E-08 64.6 17.2 148 24-173 25-208 (452)
308 1n7d_A LDL receptor, low-densi 98.0 3.5E-05 1.2E-09 80.2 11.5 203 23-227 409-622 (699)
309 2p9w_A MAL S 1 allergenic prot 98.0 0.0055 1.9E-07 55.4 23.9 193 24-218 17-264 (334)
310 2p9w_A MAL S 1 allergenic prot 98.0 0.0015 5.2E-08 59.0 20.3 199 439-648 10-262 (334)
311 2xn4_A Kelch-like protein 2; s 97.9 0.0017 5.9E-08 60.0 21.2 224 413-652 18-277 (302)
312 3ii7_A Kelch-like protein 7; p 97.9 0.0022 7.5E-08 59.5 21.5 227 411-652 12-273 (306)
313 1bpo_A Protein (clathrin); cla 97.8 0.02 6.8E-07 53.5 37.2 296 376-693 48-389 (494)
314 3a9g_A Putative uncharacterize 97.8 0.028 9.4E-07 52.9 27.3 191 22-219 31-296 (354)
315 2vpj_A Kelch-like protein 12; 97.8 0.0048 1.6E-07 57.0 21.2 220 376-611 31-280 (301)
316 3ii7_A Kelch-like protein 7; p 97.6 0.019 6.6E-07 53.0 23.5 227 367-611 13-274 (306)
317 2xn4_A Kelch-like protein 2; s 97.6 0.0083 2.9E-07 55.4 21.0 221 376-612 30-279 (302)
318 1zgk_A Kelch-like ECH-associat 97.5 0.0059 2E-07 56.5 17.7 222 413-652 27-288 (308)
319 4asc_A Kelch repeat and BTB do 97.5 0.01 3.5E-07 55.1 19.4 222 414-652 8-278 (315)
320 3pbp_A Nucleoporin NUP82; beta 97.4 0.018 6.2E-07 53.8 18.8 143 501-646 27-207 (452)
321 1xi4_A Clathrin heavy chain; a 97.4 0.01 3.5E-07 64.4 19.5 200 24-227 70-297 (1630)
322 3sre_A PON1, serum paraoxonase 97.3 0.1 3.6E-06 48.4 23.4 170 462-641 81-287 (355)
323 2woz_A Kelch repeat and BTB do 97.3 0.03 1E-06 52.0 19.9 146 505-652 109-288 (318)
324 3sbq_A Nitrous-oxide reductase 97.2 0.19 6.3E-06 48.8 25.1 265 368-639 72-453 (638)
325 3a9g_A Putative uncharacterize 97.2 0.16 5.6E-06 47.6 28.3 231 398-639 30-330 (354)
326 2ism_A Putative oxidoreductase 97.2 0.17 5.8E-06 47.5 27.4 232 355-597 32-333 (352)
327 3sre_A PON1, serum paraoxonase 97.1 0.16 5.5E-06 47.2 26.3 188 24-216 54-295 (355)
328 4asc_A Kelch repeat and BTB do 97.1 0.027 9.2E-07 52.3 17.9 188 25-222 40-280 (315)
329 2g8s_A Glucose/sorbosone dehyd 97.1 0.18 6.2E-06 47.4 27.2 136 21-158 19-210 (353)
330 1tl2_A L10, protein (tachylect 97.1 0.026 8.7E-07 47.3 15.1 142 61-213 41-204 (236)
331 1tl2_A L10, protein (tachylect 97.1 0.0055 1.9E-07 51.3 11.1 141 21-170 42-203 (236)
332 2be1_A Serine/threonine-protei 97.1 0.01 3.4E-07 54.6 14.1 229 413-655 12-301 (339)
333 2g8s_A Glucose/sorbosone dehyd 97.1 0.19 6.4E-06 47.2 24.4 239 399-650 20-351 (353)
334 1zgk_A Kelch-like ECH-associat 97.1 0.018 6E-07 53.3 16.2 182 30-221 70-289 (308)
335 2woz_A Kelch repeat and BTB do 97.1 0.047 1.6E-06 50.7 19.0 220 377-614 25-292 (318)
336 1xi4_A Clathrin heavy chain; a 97.0 0.074 2.5E-06 58.1 21.5 300 376-693 48-389 (1630)
337 3s25_A Hypothetical 7-bladed b 96.9 0.23 8E-06 45.2 22.3 179 21-220 54-256 (302)
338 2uvk_A YJHT; unknown function, 96.9 0.022 7.5E-07 54.1 15.1 136 516-654 168-345 (357)
339 2be1_A Serine/threonine-protei 96.7 0.17 5.9E-06 46.5 18.5 143 73-216 11-181 (339)
340 2uvk_A YJHT; unknown function, 96.6 0.073 2.5E-06 50.4 16.1 211 8-227 43-350 (357)
341 1cru_A Protein (soluble quinop 96.4 0.65 2.2E-05 45.2 21.5 100 23-122 30-163 (454)
342 1cru_A Protein (soluble quinop 96.3 0.79 2.7E-05 44.6 21.6 104 495-598 27-163 (454)
343 3s25_A Hypothetical 7-bladed b 96.1 0.78 2.7E-05 41.7 27.7 173 27-219 21-216 (302)
344 3das_A Putative oxidoreductase 96.1 0.9 3.1E-05 42.0 32.2 239 396-639 31-326 (347)
345 3sbq_A Nitrous-oxide reductase 96.1 1.2 4.2E-05 43.4 20.9 228 412-652 71-409 (638)
346 2zwa_A Leucine carboxyl methyl 95.7 0.7 2.4E-05 48.1 19.6 191 413-613 400-639 (695)
347 2zwa_A Leucine carboxyl methyl 95.5 1.2 4E-05 46.5 20.2 192 29-222 396-638 (695)
348 3qhy_B Beta-lactamase inhibito 95.2 0.83 2.8E-05 41.1 15.8 230 368-631 35-264 (282)
349 3qhy_B Beta-lactamase inhibito 95.0 0.58 2E-05 42.1 14.0 207 420-652 41-247 (282)
350 3das_A Putative oxidoreductase 94.6 2.7 9.4E-05 38.8 27.0 112 97-209 26-160 (347)
351 3no0_A DNA gyrase subunit A; D 93.1 4.5 0.00015 36.0 19.7 186 28-219 33-246 (276)
352 3uc1_A DNA gyrase subunit A; D 92.3 6.6 0.00022 36.0 25.5 239 73-337 4-281 (327)
353 3uc1_A DNA gyrase subunit A; D 92.3 6.8 0.00023 35.9 21.9 235 413-651 5-279 (327)
354 4gq2_M Nucleoporin NUP120; bet 91.7 17 0.00058 39.4 21.8 38 538-575 237-274 (950)
355 2wg3_C Hedgehog-interacting pr 90.0 8.2 0.00028 37.5 15.0 103 22-124 16-160 (463)
356 2wg3_C Hedgehog-interacting pr 89.5 16 0.00055 35.5 27.5 247 399-651 16-371 (463)
357 3kci_A Probable E3 ubiquitin-p 88.8 16 0.00056 34.6 28.6 248 266-524 64-344 (389)
358 1zi0_A DNA gyrase subunit A; b 88.5 14 0.00048 33.5 23.7 233 413-650 5-276 (307)
359 3kci_A Probable E3 ubiquitin-p 86.6 22 0.00075 33.7 29.0 291 265-567 11-345 (389)
360 3q6k_A 43.2 kDa salivary prote 86.0 23 0.00077 33.2 26.1 181 24-206 91-341 (381)
361 4gq2_M Nucleoporin NUP120; bet 84.7 49 0.0017 35.9 23.9 38 580-617 237-274 (950)
362 3no0_A DNA gyrase subunit A; D 84.6 21 0.00073 31.7 24.1 205 303-523 22-244 (276)
363 1suu_A DNA gyrase subunit A; t 83.3 26 0.0009 31.8 26.0 239 70-335 6-283 (312)
364 3zwu_A Alkaline phosphatase PH 82.7 3.9 0.00013 40.9 8.4 55 24-78 480-548 (592)
365 1zi0_A DNA gyrase subunit A; b 82.5 28 0.00096 31.5 27.5 249 70-336 1-278 (307)
366 1suu_A DNA gyrase subunit A; t 81.5 31 0.0011 31.3 24.7 191 413-608 10-230 (312)
367 4a9v_A PHOX; hydrolase, beta-p 81.0 5.4 0.00018 39.4 8.4 56 24-79 480-549 (592)
368 4fhn_B Nucleoporin NUP120; pro 80.4 78 0.0027 35.3 20.0 38 580-617 239-276 (1139)
369 4hvt_A Ritya.17583.B, post-pro 78.1 68 0.0023 33.3 21.7 233 405-650 136-429 (711)
370 3l6v_A GYRA, DNA gyrase subuni 76.0 51 0.0017 30.7 24.4 237 407-649 4-314 (370)
371 3mvd_K Regulator of chromosome 74.9 61 0.0021 31.0 32.3 244 266-524 86-373 (423)
372 1wp5_A Topoisomerase IV; broke 74.4 52 0.0018 30.0 24.6 251 70-337 3-279 (323)
373 3b7f_A Glycosyl hydrolase, BNR 73.1 63 0.0022 30.5 22.0 174 32-210 23-254 (394)
374 4fhn_B Nucleoporin NUP120; pro 71.8 34 0.0011 38.2 12.8 38 538-575 239-276 (1139)
375 3b7f_A Glycosyl hydrolase, BNR 70.1 74 0.0025 30.0 27.2 130 496-628 233-390 (394)
376 3l6v_A GYRA, DNA gyrase subuni 67.9 79 0.0027 29.5 28.4 264 69-336 4-317 (370)
377 3zwu_A Alkaline phosphatase PH 66.9 20 0.00069 35.9 8.7 59 62-120 477-548 (592)
378 4a9v_A PHOX; hydrolase, beta-p 66.5 31 0.0011 34.2 9.6 60 61-120 476-548 (592)
379 1wp5_A Topoisomerase IV; broke 65.7 80 0.0028 28.7 23.2 166 304-473 38-225 (323)
380 4d9s_A UVB-resistance protein 64.0 1E+02 0.0034 29.3 35.4 285 266-566 27-356 (406)
381 4d9s_A UVB-resistance protein 62.9 1.1E+02 0.0036 29.1 37.9 279 355-651 17-357 (406)
382 1zvt_A Topoisomerase IV subuni 61.2 83 0.0029 27.4 10.7 141 508-651 4-163 (256)
383 3f7f_A Nucleoporin NUP120; nuc 54.3 18 0.00061 37.0 5.8 65 587-653 228-307 (729)
384 3f7f_A Nucleoporin NUP120; nuc 53.6 25 0.00087 35.9 6.7 37 62-100 223-259 (729)
385 3elq_A Arylsulfate sulfotransf 42.9 2.7E+02 0.0091 27.8 23.2 111 29-144 216-395 (571)
386 1q47_A Semaphorin 3A; beta pro 36.8 1.3E+02 0.0045 29.4 8.7 69 146-214 405-487 (495)
387 3al9_A Plexin-A2; beta-propell 35.4 1E+02 0.0035 30.6 7.8 69 146-214 401-476 (539)
388 3q6k_A 43.2 kDa salivary prote 34.4 2.9E+02 0.01 25.8 23.9 175 376-554 123-341 (381)
389 3mez_A Mannose-specific lectin 31.7 1.5E+02 0.005 21.5 7.8 54 24-89 23-76 (111)
390 3mez_B Mannose-specific lectin 31.7 1.5E+02 0.0051 21.6 10.0 58 24-91 27-84 (113)
391 3mvd_K Regulator of chromosome 31.2 3.5E+02 0.012 25.7 36.0 278 314-609 31-374 (423)
392 2dpf_A Curculin; sweet taste, 28.0 1.8E+02 0.006 21.3 8.9 56 24-91 23-78 (115)
393 4gz8_A Semaphorin-3A; multi-do 26.7 2.2E+02 0.0077 29.1 8.6 69 146-214 413-495 (667)
394 1q47_A Semaphorin 3A; beta pro 24.1 2.9E+02 0.0099 27.0 8.7 76 443-520 405-487 (495)
395 4hvt_A Ritya.17583.B, post-pro 23.1 6.4E+02 0.022 26.1 24.8 193 24-221 134-383 (711)
396 1zvt_A Topoisomerase IV subuni 21.7 3.9E+02 0.014 23.1 16.0 81 304-385 83-163 (256)
397 3mez_B Mannose-specific lectin 21.6 2.4E+02 0.0081 20.5 10.6 24 149-176 60-83 (113)
398 4gz8_A Semaphorin-3A; multi-do 21.4 2.2E+02 0.0076 29.1 7.5 65 455-520 430-495 (667)
399 3hx6_A Type 4 fimbrial biogene 20.7 5.2E+02 0.018 25.7 9.5 79 15-93 190-286 (570)
400 3a0c_A Mannose/sialic acid-bin 20.1 2.5E+02 0.0086 20.2 11.4 75 24-118 23-97 (110)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.9e-74 Score=599.88 Aligned_cols=555 Identities=28% Similarity=0.505 Sum_probs=493.9
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
+++|||||++||+++.+ .|+|||. +++.++.+.+|...|++++|+||+++||+++.|+.|+|||. +++++..+.+|.
T Consensus 21 ~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~ 98 (577)
T 2ymu_A 21 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 98 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCS
T ss_pred EEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCC
Confidence 79999999999999886 8999994 78888999999999999999999999999999999999995 678899999999
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEE
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 182 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 182 (706)
..|.+++|+|++++|++++.|+.+++|+.... ......++...+..+.++|++.. +++++.++.+++|+. ......
T Consensus 99 ~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~ 174 (577)
T 2ymu_A 99 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQT--IASASDDKTVKLWNR-NGQLLQ 174 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTCC-EEEEECCCSSCEEEEEECTTSSC--EEEEETTSEEEEECT-TSCEEE
T ss_pred CCEEEEEECCCCCEEEEEcCCCceeecccccc-eeeeccCCCCceeeeeeecCCcc--ceecccccceecccc-ceeeee
Confidence 99999999999999999999999999997654 45567789999999999999887 999999999999986 455566
Q ss_pred EeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec-CcceeeeEEeeCCCCCcccccccccchhhhcccc
Q 005254 183 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP-TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRR 261 (706)
Q Consensus 183 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (706)
....|...+.++.++|++++|++++.|+.|++|+.. ++....+. ....+..+++.+++.
T Consensus 175 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg~------------------- 234 (577)
T 2ymu_A 175 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQ------------------- 234 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSS-------------------
T ss_pred eccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEEecCCCCEEEEEECCCCC-------------------
Confidence 677899999999999999999999999999999964 44444443 456688888888876
Q ss_pred ccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccce
Q 005254 262 SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 341 (706)
Q Consensus 262 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 341 (706)
.+++++.++.+++|+.....+.. ...+...+..+.+.|+++.+++++.++.+.+|+....
T Consensus 235 ----~l~~~~~d~~i~~w~~~~~~~~~-----------~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~----- 294 (577)
T 2ymu_A 235 ----TIASASDDKTVKLWNRNGQLLQT-----------LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ----- 294 (577)
T ss_dssp ----CEEEEETTSCEEEECTTSCEEEE-----------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-----
T ss_pred ----EEEEEeCCCEEEEEeCCCCEEEE-----------EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-----
Confidence 68899999999999976543322 2345667889999999999999999999999985432
Q ss_pred eeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCC
Q 005254 342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 421 (706)
Q Consensus 342 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg 421 (706)
....+.+|...+.+++|.| ++..+++++.++.+++||.... ....+.+|...+.++. +.|+++. +++++.|+
T Consensus 295 ---~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~--~s~~g~~-l~~~~~dg 366 (577)
T 2ymu_A 295 ---LLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVA--FSPDGQT-IASASDDK 366 (577)
T ss_dssp ---EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEE--ECTTSSE-EEEEETTS
T ss_pred ---EEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEE--ECCCCCE-EEEEeCCC
Confidence 2345678899999999987 7789999999999999998755 4557788999999998 8888887 99999999
Q ss_pred cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEE
Q 005254 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (706)
.+++||. +++.+..+..|...|.+++|+|+++ +|++++.|+.|++|+.... ....+..|...|++++
T Consensus 367 ~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~~~~-----------~~~~~~~~~~~v~~~~ 433 (577)
T 2ymu_A 367 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQ-----------LLQTLTGHSSSVWGVA 433 (577)
T ss_dssp EEEEEET-TCCEEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTTCC-----------EEEEEECCSSCEEEEE
T ss_pred EEEEEcC-CCCEEEEecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCC-----------EEEEecCCCCCeEEEE
Confidence 9999995 5677888899999999999999988 8999999999999996432 5567788999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCE
Q 005254 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581 (706)
Q Consensus 502 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 581 (706)
|+||+++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. +++++..+.+|...|
T Consensus 434 ~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v 511 (577)
T 2ymu_A 434 FSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 511 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCE
Confidence 9999999999999999999996 56788889999999999999999999999999999999995 788999999999999
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
++++|+|+|++|++++.||.|++||. +++++..+.+|.+.|++++|+||+++|+|++.|++|++||
T Consensus 512 ~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 512 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999999999996 7899999999999999999999999999999999999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.9e-75 Score=604.53 Aligned_cols=584 Identities=18% Similarity=0.227 Sum_probs=484.5
Q ss_pred CCCcccccceeeceeeeeeeeccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec
Q 005254 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH 80 (706)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~ 80 (706)
|..+.++..|++.|..++-. ..+++|+|||++||++.++.|++||+.+++....+.+|...|++++|||+|++||+|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~-~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~ 79 (611)
T 1nr0_A 1 MSEFSQTALFPSLPRTARGT-AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 79 (611)
T ss_dssp -CCCEEEEEECCCCCCCTTC-CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCccccccEECCCCCcccCc-eeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeC
Confidence 55578899999888766532 23799999999999999999999999999988999999999999999999999999999
Q ss_pred cCeEEEEECCCC--eEEEEeeccCCCeEEEEECCCCCEEEEecCCC----cEEEEECCCCeEEEEeeCCCCcEEEEEEcC
Q 005254 81 SREIRVWDLSTL--KCLRSWKGHDGPAIGMACHPSGGLLATAGADR----KVLVWDVDGGFCTHYFKGHKGVVSSILFHP 154 (706)
Q Consensus 81 d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~ 154 (706)
|++|+|||+.++ .....+.+|.++|.+++|+||+++|++++.+. .|++|| .++....+.+|...|.+++|+|
T Consensus 80 d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p 157 (611)
T 1nr0_A 80 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKP 157 (611)
T ss_dssp TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECS
T ss_pred CCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECC
Confidence 999999999754 35567889999999999999999999987643 555555 6777788899999999999999
Q ss_pred CCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeee--------
Q 005254 155 DTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV-------- 226 (706)
Q Consensus 155 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~-------- 226 (706)
++. ..+++++.|++|++||..+++....+.+|...|.+++|+|+|++|++++.|+.|++||+.+++....+
T Consensus 158 ~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~ 236 (611)
T 1nr0_A 158 SRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236 (611)
T ss_dssp SSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred CCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccc
Confidence 865 24999999999999999999999999999999999999999999999999999999999998877666
Q ss_pred cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccc
Q 005254 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (706)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (706)
.+...+..+.++|++. .+++++.|++|++||+.++......... ......
T Consensus 237 ~h~~~V~~v~~spdg~-----------------------~l~s~s~D~~v~lWd~~~~~~~~~~~~~-------~~~~~~ 286 (611)
T 1nr0_A 237 AHSGSVFGLTWSPDGT-----------------------KIASASADKTIKIWNVATLKVEKTIPVG-------TRIEDQ 286 (611)
T ss_dssp SSSSCEEEEEECTTSS-----------------------EEEEEETTSEEEEEETTTTEEEEEEECC-------SSGGGC
T ss_pred ccCCCEEEEEECCCCC-----------------------EEEEEeCCCeEEEEeCCCCceeeeecCC-------CCccce
Confidence 3556788999999886 7999999999999999988554332211 011112
Q ss_pred eeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
...+.+ +++.++.++.++.+.+|+..... ....+.+|...+.+++|+| +++++++++.|+.|++||+.++
T Consensus 287 ~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~-------~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 287 QLGIIW--TKQALVSISANGFINFVNPELGS-------IDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp EEEEEE--CSSCEEEEETTCCEEEEETTTTE-------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC
T ss_pred eEEEEE--cCCEEEEEeCCCcEEEEeCCCCC-------cceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCC
Confidence 233333 78889999999999999865431 3345678999999999987 7889999999999999999998
Q ss_pred eeeEee-eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE---EeCCCcCeEEEEEecCCCeEEEEecC
Q 005254 387 SCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV---GTGHMGAVGAVAFSKKLQNFLVSGSS 462 (706)
Q Consensus 387 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~ 462 (706)
.....+ .+|...+.++. +.+++ . +++++.|+.+++|+...+..... ..........++++|++. .++++ .
T Consensus 357 ~~~~~~~~~h~~~v~~~~--~s~~~-~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~~~-~ 430 (611)
T 1nr0_A 357 ISNRVFPDVHATMITGIK--TTSKG-D-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD-IAVAA-C 430 (611)
T ss_dssp CEEECSSCSCSSCEEEEE--ECTTS-C-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS-CEEEE-E
T ss_pred ceeeecccCCcceEEEEE--ECCCC-c-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCc-EEEEE-e
Confidence 877665 67889999997 66544 4 88999999999999876532110 011234567899999987 34444 5
Q ss_pred CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE--EEEEeecCCcEE
Q 005254 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS--VVTFRGHKRGIW 540 (706)
Q Consensus 463 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~ 540 (706)
++.+++|+.. .... ..+...+.+++|+|||++|++|+.|+.|++||+.++.. ... .+|...|+
T Consensus 431 ~~~v~~~~~~-------------~~~~-~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~ 495 (611)
T 1nr0_A 431 YKHIAIYSHG-------------KLTE-VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEIT 495 (611)
T ss_dssp SSEEEEEETT-------------EEEE-EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEE
T ss_pred CceEEEEeCC-------------ceee-eecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceE
Confidence 6789999821 1112 23778899999999999999999999999999987643 233 67999999
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEcCC-CceEEE--EeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe-EE-EE
Q 005254 541 SVEFSPVDQVVITASGDKTIKIWSISD-GSCLKT--FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-CI-AT 615 (706)
Q Consensus 541 ~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~-~~ 615 (706)
+++|+|++++|++++.|++|++||+.+ ++++.. +.+|...|.+++|+|||++|++++.|++|++||+.+++ .+ ..
T Consensus 496 ~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~ 575 (611)
T 1nr0_A 496 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII 575 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchh
Confidence 999999999999999999999999987 555443 34499999999999999999999999999999998875 33 56
Q ss_pred eccC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 616 YDKH-EDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 616 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
+.+| .+.|.+++|+|+++ |++++.|++|++|++.
T Consensus 576 ~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 576 KGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred hccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 7789 89999999999998 9999999999999984
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.8e-70 Score=566.48 Aligned_cols=532 Identities=28% Similarity=0.498 Sum_probs=473.5
Q ss_pred eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
+..+.|+||.+.|++++|||||++||+|+.|+.|+|||. ++++++++.+|...|.+++|+||+++||+++.|++|++||
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 345779999999999999999999999999999999994 7899999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC
Q 005254 131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK 210 (706)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 210 (706)
+ +++.+..+.+|...|.+++|+|+++. +++++.|+.+++|+... ........|...+.++.++|++..+++++.++
T Consensus 86 ~-~~~~~~~~~~~~~~v~~~~~s~d~~~--l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (577)
T 2ymu_A 86 R-NGQLLQTLTGHSSSVRGVAFSPDGQT--IASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161 (577)
T ss_dssp T-TSCEEEEECCCSSCEEEEEECTTSSE--EEEEETTSCEEEEETTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred C-CCCEEEEEECCCCCEEEEEECCCCCE--EEEEcCCCceeeccccc-ceeeeccCCCCceeeeeeecCCccceeccccc
Confidence 6 57788899999999999999999876 99999999999999754 45566778999999999999999999999999
Q ss_pred EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeec
Q 005254 211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290 (706)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 290 (706)
.+++|+...............+..+.+.+++. .+++++.++.+++|+........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------------~l~~~~~d~~v~~w~~~~~~~~~-- 216 (577)
T 2ymu_A 162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-----------------------TIASASDDKTVKLWNRNGQLLQT-- 216 (577)
T ss_dssp EEEEECTTSCEEEEEECCSSCEEEEEECTTSS-----------------------CEEEEETTSEEEEECTTSCEEEE--
T ss_pred ceeccccceeeeeeccCCCcceeeeeecCCCC-----------------------EEEEEcCCCEEEEEeCCCcEEEE--
Confidence 99999987766666666667788888888875 68899999999999976543322
Q ss_pred cCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEE
Q 005254 291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA 370 (706)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 370 (706)
...+...+..++++|++..+++++.++.+.+|+.... ....+.++...+.+++|.| ++..++
T Consensus 217 ---------~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~--------~~~~~~~~~~~v~~v~~~~-d~~~l~ 278 (577)
T 2ymu_A 217 ---------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVNGVAFRP-DGQTIA 278 (577)
T ss_dssp ---------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--------EEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred ---------EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC--------EEEEEecCCCCEEEEEEcC-CCCEEE
Confidence 2235567889999999999999999999999985421 2345667889999999987 778999
Q ss_pred EEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEe
Q 005254 371 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 450 (706)
Q Consensus 371 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 450 (706)
+++.++.+++|+.. ++....+.+|...+.++. +.|++.. +++++.|+.|++||.... .+..+..|...+.+++|+
T Consensus 279 ~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~--~~~~~~~-l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s 353 (577)
T 2ymu_A 279 SASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVA--FSPDGQT-IASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFS 353 (577)
T ss_dssp EEETTSCEEEEETT-SCEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEEC
T ss_pred EEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEE--ECCCCCE-EEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEEEC
Confidence 99999999999965 566678899999999998 8888887 999999999999997654 556678899999999999
Q ss_pred cCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEE
Q 005254 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 530 (706)
Q Consensus 451 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 530 (706)
|+++ ++++++.|+.+++|+.... ....+..|...|++++|+|++++|++++.|+.|++||. +++.+.
T Consensus 354 ~~g~-~l~~~~~dg~v~~~~~~~~-----------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~ 420 (577)
T 2ymu_A 354 PDGQ-TIASASDDKTVKLWNRNGQ-----------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ 420 (577)
T ss_dssp TTSS-EEEEEETTSEEEEEETTCC-----------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEE
T ss_pred CCCC-EEEEEeCCCEEEEEcCCCC-----------EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEE
Confidence 9988 8999999999999996432 56667889999999999999999999999999999995 577888
Q ss_pred EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC
Q 005254 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG 610 (706)
Q Consensus 531 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 610 (706)
.+.+|...|++++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. ++
T Consensus 421 ~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~ 498 (577)
T 2ymu_A 421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 498 (577)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TS
T ss_pred EecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC
Confidence 89999999999999999999999999999999996 67888899999999999999999999999999999999995 78
Q ss_pred eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 611 ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 611 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
+++..+.+|...|++++|+||+++|++++.||.|++||.+
T Consensus 499 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 9999999999999999999999999999999999999964
No 4
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.6e-70 Score=571.94 Aligned_cols=573 Identities=17% Similarity=0.217 Sum_probs=494.3
Q ss_pred CCCcccccceeeceeeeeeeeccceEEcCCCCEEEEeeCCeEEEEEccCC----eEEEeecCCCcc-EEEEEEcc--CCC
Q 005254 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNA----SIKSTIEGGSDT-ITALALSP--DDK 73 (706)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~----~~~~~l~~~~~~-i~~l~~s~--~~~ 73 (706)
|....+++.|++.|...+ -...+++|+|||++|++++++.|.+||+.++ +....+.+|... |++++|+| +++
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~ 79 (615)
T 1pgu_A 1 MSSISLKEIIPPQPSTQR-NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 79 (615)
T ss_dssp -CCEEEEEEECCCCCCCT-TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC
T ss_pred CCccchhhccCCCCCCcc-CceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC
Confidence 778889999997775432 2234899999999999999999999999999 888999999999 99999999 999
Q ss_pred EEEEEeccCeEEEEECCCC--------eEEEEeeccCCCeEEEEECCCCCEEEEecCC----CcEEEEECCCCeEEEEee
Q 005254 74 LLFSSGHSREIRVWDLSTL--------KCLRSWKGHDGPAIGMACHPSGGLLATAGAD----RKVLVWDVDGGFCTHYFK 141 (706)
Q Consensus 74 ~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~vw~~~~~~~~~~~~ 141 (706)
+||+++.||.|++||+.++ +.+..+..|..+|.+++|+|++++|++++.+ +.|++|| .++.+..+.
T Consensus 80 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~ 157 (615)
T 1pgu_A 80 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS 157 (615)
T ss_dssp EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC
T ss_pred EEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee
Confidence 9999999999999999855 7788889999999999999999999999877 5677776 677888999
Q ss_pred CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccc---eEEEEEEecC-CCEEEEEeCCCEEEEEeC
Q 005254 142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS---RVTSMAITSD-GSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 142 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~~w~~ 217 (706)
+|...|.+++|+|+++. ++++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+ +++|++++.||.|++||+
T Consensus 158 ~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 158 GHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp SCSSCEEEEEECSSSSC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred cCCccEEEEEECCCCCc-EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 99999999999998762 499999999999999999999999999999 9999999999 999999999999999999
Q ss_pred CCCcceeee-----cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccC
Q 005254 218 RDYSCKLTV-----PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292 (706)
Q Consensus 218 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 292 (706)
.+++.+..+ .....+..+.+. ++. .+++++.++.|++||+.++........
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-----------------------~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQ-----------------------KFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEES-SSS-----------------------EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEeEEecccccccCCceEEEEEc-CCC-----------------------EEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 999988887 556678888887 554 799999999999999998755433322
Q ss_pred ccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEE
Q 005254 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372 (706)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 372 (706)
.. ......+..+.+ +++..+++++.++.+.+|+.... .....+.++...+.+++| |+ ++++
T Consensus 293 ~~------~~~~~~~~~~~~-~~~~~l~~~~~~g~i~~~d~~~~-------~~~~~~~~~~~~v~~~~~-~~----l~~~ 353 (615)
T 1pgu_A 293 DK------QQLGNQQVGVVA-TGNGRIISLSLDGTLNFYELGHD-------EVLKTISGHNKGITALTV-NP----LISG 353 (615)
T ss_dssp CT------TCGGGCEEEEEE-EETTEEEEEETTSCEEEEETTEE-------EEEEEECCCSSCEEEEET-TT----TEEE
T ss_pred CC------CcccCceeEEEe-CCCCeEEEEECCCCEEEEECCCC-------cEEEEEeCCCCCEEEEEe-cC----cEEE
Confidence 11 112234455555 48899999999999999998752 234566789999999999 65 9999
Q ss_pred ecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecC
Q 005254 373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 452 (706)
Q Consensus 373 ~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (706)
+.+|.+++|++. ... ..|...+.++. + +++.. +++++.|+.+++||+.+++.. ..+.+++++|+
T Consensus 354 ~~dg~i~~w~~~---~~~--~~~~~~v~~~~--~-~~~~~-l~~~~~d~~i~~~~~~~~~~~-------~~~~~~~~s~~ 417 (615)
T 1pgu_A 354 SYDGRIMEWSSS---SMH--QDHSNLIVSLD--N-SKAQE-YSSISWDDTLKVNGITKHEFG-------SQPKVASANND 417 (615)
T ss_dssp ETTSCEEETTTT---EEE--CCCCSCEEEEE--C-CSTTC-CEEEETTTEEEETTEEEEECS-------SCEEEEEECSS
T ss_pred CCCCeEEEEEch---hhc--CcccCceEEEE--E-CCCcE-EEEEeCCCCEEEEEcccCccc-------CCceEEEEcCC
Confidence 999999999998 332 88999999997 5 55666 899999999999998765433 26788999999
Q ss_pred CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCccEE-E
Q 005254 453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSV-V 530 (706)
Q Consensus 453 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~-~ 530 (706)
+. +++++ .++.+.+|+...+. .... ..+...+.+++++ ++++++++. |+.|++||+.+++.. .
T Consensus 418 ~~-~~~~~-~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~ 482 (615)
T 1pgu_A 418 GF-TAVLT-NDDDLLILQSFTGD----------IIKS-VRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFD 482 (615)
T ss_dssp SE-EEEEE-TTSEEEEEETTTCC----------EEEE-EECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEE
T ss_pred CC-EEEEe-CCCceEEEeccCCc----------eeee-cccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcccccc
Confidence 86 55555 88999999986542 2222 3478899999999 889999999 999999999987665 6
Q ss_pred EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee-cccCEEEEEEEe----------CCCEEEEEeCC
Q 005254 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-HTSSVLRASFLT----------RGAQIVSCGAD 599 (706)
Q Consensus 531 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~----------~~~~l~~~~~d 599 (706)
.+..|...|++++|+|++++|++++.||.|++||+.+++++..+.+ |...|++++|+| ++++|++++.|
T Consensus 483 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d 562 (615)
T 1pgu_A 483 LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 562 (615)
T ss_dssp CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred ccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC
Confidence 6778999999999999999999999999999999999999999988 999999999999 99999999999
Q ss_pred CCEEEEECCCC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 600 GLVKLWTVRTG-ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 600 g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
|.|++||+.++ +++..+.+|.+.|++++|+|+++ |++++.||.|++|+++.+
T Consensus 563 g~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 563 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp SCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred CcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 99999999998 78899999999999999999999 999999999999999753
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.7e-68 Score=605.85 Aligned_cols=572 Identities=20% Similarity=0.297 Sum_probs=504.3
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
+++|||||++|++++.+ .|++||+.+++.+..+.+|...|++++|+|++++||+++.|+.|++||+.+++.+..+.+|.
T Consensus 620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~ 699 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS 699 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence 79999999999999876 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECC--CCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee
Q 005254 103 GPAIGMACHP--SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180 (706)
Q Consensus 103 ~~v~~~~~s~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 180 (706)
..|.+++|+| ++.++++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++. +++++.||.|++||+.+++.
T Consensus 700 ~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~--l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 700 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL--LASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTE--EEEEESSSEEEEEEGGGTEE
T ss_pred CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCE--EEEEECCCeEEEEeCCCCcc
Confidence 9999999999 5568999999999999999999999999999999999999998876 99999999999999999887
Q ss_pred EEEeec-------------ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec--CcceeeeEEeeCCCCCcc
Q 005254 181 VATLDK-------------HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP--TYEMVEAVCAIPPGSAFD 245 (706)
Q Consensus 181 ~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 245 (706)
...+.. +...+.+++|+|+|+.+++++ ++.+.+|++.++.....+. ....+..+.+++++.
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~--- 853 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH--- 853 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT---
T ss_pred cceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC---
Confidence 766542 223688999999999999887 7899999999988777664 455678888888776
Q ss_pred cccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeC
Q 005254 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (706)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (706)
.+++++.+|.+++|+..++..... ...+...+..+.++|++..+++++.|
T Consensus 854 --------------------~l~~~~~dg~v~vwd~~~~~~~~~----------~~~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 854 --------------------LAVIALSQYCVELWNIDSRLKVAD----------CRGHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp --------------------EEEEECSSSCEEEEETTTTEEEEE----------ECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred --------------------EEEEEeCCCeEEEEEcCCCceeee----------cCCCccceEEEEECCCCCEEEEEeCC
Confidence 789999999999999998754332 23566789999999999999999999
Q ss_pred CceEEEEeeeccccceee-E-----------------------------EeeEecccCceeeEeeEeCCCCcEEEEEecC
Q 005254 326 QQLLLYTTVEVPEKKMEL-I-----------------------------LSKRLVGYNEEILDLKFLGEEEQYLAVATNI 375 (706)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~-~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 375 (706)
+.+.+|+........... . ...........+.+++++| ++.++++++.+
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~g~~~ 982 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP-HLEYVAFGDED 982 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT-TSSEEEEEETT
T ss_pred CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC-CCCEEEEEcCC
Confidence 999999976422110000 0 0000112245677788876 78899999999
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCe
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 455 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 455 (706)
|.+.+|++.++.....+.+|...+.++. ++|+++. +++++.||.|++||+.+++... ...|...+.+++++|++
T Consensus 983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~--~s~dg~~-l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~-- 1056 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQ--FTADGKT-LISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS-- 1056 (1249)
T ss_dssp SCCEEEETTTTSCEEECCCCSSCCCCEE--ECSSSSC-EEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS--
T ss_pred CCEEEEEcCCCceeeecccCCCceEEEE--ECCCCCE-EEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCC--
Confidence 9999999999999999999999999998 8888887 9999999999999999988764 56789999999999976
Q ss_pred EEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeec
Q 005254 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH 535 (706)
Q Consensus 456 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 535 (706)
.+++++.|+.|++||+..+. ....+..|...|.+++|+|+++++++++.||.|++||+.+++.+..+.+|
T Consensus 1057 ~l~~~~~dg~v~vwd~~~~~----------~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h 1126 (1249)
T 3sfz_A 1057 RLLSWSFDGTVKVWNVITGR----------IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1126 (1249)
T ss_dssp EEEEEESSSEEEEEETTTTC----------CCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC
T ss_pred cEEEEECCCcEEEEECCCCc----------eeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccC
Confidence 48899999999999998764 45667789999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEE---------eecccCEEEEEEEeCCCEEEEEeCCCCEEEEE
Q 005254 536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF---------EGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (706)
Q Consensus 536 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 606 (706)
...|++++|+|++++|++++.||.|++||+.+++.+..+ .+|.+.|++++|+|||++|++++ |.|++||
T Consensus 1127 ~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd 1204 (1249)
T 3sfz_A 1127 NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWN 1204 (1249)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEE
Confidence 999999999999999999999999999999998877654 56889999999999999999885 8999999
Q ss_pred CCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 607 VRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 607 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
+.+++.+..+..|...|.+++|+||+++|++++.||.+++|++.
T Consensus 1205 ~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1205 VATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp SSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred CCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 99999999999999999999999999999999999999999975
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8e-66 Score=534.65 Aligned_cols=540 Identities=17% Similarity=0.223 Sum_probs=445.5
Q ss_pred CCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC--e
Q 005254 58 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG--F 135 (706)
Q Consensus 58 ~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~--~ 135 (706)
.+.+.+.+++|+|||++||+++ ++.|++||+.+++....+.+|...|++++|+|||++||+|+.|++|+|||+.++ .
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~ 94 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 94 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce
Confidence 3466788999999999999987 569999999999999999999999999999999999999999999999999754 3
Q ss_pred EEEEeeCCCCcEEEEEEcCCCCceEEEEEecC----CeEEEEECCCCeeEEEeecccceEEEEEEecCCC-EEEEEeCCC
Q 005254 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD----ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS-TLISAGRDK 210 (706)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg 210 (706)
....+.+|.+.|.+++|+|+++. +++++.+ +.|++|| .++....+.+|...|.+++|+|++. .|++++.|+
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg~~--l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~ 170 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSESKR--IAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTSCE--EEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred eeEeecccCCceEEEEECCCCCE--EEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCC
Confidence 45678899999999999999876 7777654 4677777 5667778899999999999999987 599999999
Q ss_pred EEEEEeCCCCcceeeecC-cceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEee
Q 005254 211 VVNLWDLRDYSCKLTVPT-YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 289 (706)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 289 (706)
.|++||..+++....+.. ...+..+.++|++. .+++++.|+.|++||..++.....
T Consensus 171 ~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~-----------------------~las~s~D~~i~lwd~~~g~~~~~ 227 (611)
T 1nr0_A 171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-----------------------LFASTGGDGTIVLYNGVDGTKTGV 227 (611)
T ss_dssp CEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-----------------------EEEEEETTSCEEEEETTTCCEEEE
T ss_pred eEEEEECCCCeEeeeeccccCceEEEEECCCCC-----------------------EEEEEECCCcEEEEECCCCcEeee
Confidence 999999998887777764 45688999999886 789999999999999988754432
Q ss_pred ccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEE
Q 005254 290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 369 (706)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 369 (706)
.... ......+...+..+.++|+++.+++++.|+.+.+|+........ .......+......+.+ ++..+
T Consensus 228 ~~~~---~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~l 297 (611)
T 1nr0_A 228 FEDD---SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK----TIPVGTRIEDQQLGIIW---TKQAL 297 (611)
T ss_dssp CBCT---TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECCSSGGGCEEEEEE---CSSCE
T ss_pred eccc---cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee----eecCCCCccceeEEEEE---cCCEE
Confidence 2110 01122567789999999999999999999999999986532110 11111122334455555 56789
Q ss_pred EEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE-eCCCcCeEEEE
Q 005254 370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-TGHMGAVGAVA 448 (706)
Q Consensus 370 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~ 448 (706)
++++.++.+++|+...+.....+.+|...+.+++ ++|+++. +++++.|+.|++||+.+++....+ ..|...|.+++
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~--~spdg~~-l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~ 374 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALS--SSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 374 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEE
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE--EeCCCCE-EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEE
Confidence 9999999999999999988888999999999998 8898887 999999999999999998877665 57899999999
Q ss_pred EecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 528 (706)
|++++ .+++++.|+.+++|++.......... ..........+++++|+|+.+++++ ++.+++|+ .++
T Consensus 375 ~s~~~--~l~s~s~d~~v~~w~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~dg~~~~~~~-~~~v~~~~--~~~- 441 (611)
T 1nr0_A 375 TTSKG--DLFTVSWDDHLKVVPAGGSGVDSSKA-------VANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYS--HGK- 441 (611)
T ss_dssp ECTTS--CEEEEETTTEEEEECSSSSSSCTTSC-------CEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEE--TTE-
T ss_pred ECCCC--cEEEEEcCCceEEeecCCccccccce-------eeeecCCCCcEEEEeCCCcEEEEEe-CceEEEEe--CCc-
Confidence 99876 48899999999999987643211110 0112234567899999998888774 67899998 343
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce--EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEE
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 606 (706)
+..+. |...+.+++|+||+++|++|+.|++|++||+.++.. ... .+|...|++++|+|||++|++++.|+.|++||
T Consensus 442 ~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 442 LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence 44554 888999999999999999999999999999987654 334 67999999999999999999999999999999
Q ss_pred CCC-CeEEEE--eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 607 VRT-GECIAT--YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 607 ~~~-~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+.+ ++++.. +.+|...|.+++|+||+++|++++.|++|++|++.++.
T Consensus 520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 988 666554 33599999999999999999999999999999998754
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.5e-65 Score=579.99 Aligned_cols=543 Identities=20% Similarity=0.319 Sum_probs=473.9
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
...+.+|...|++++|+|+|++||+|+.||.|++||+.+++.+..+.+|...|.+++|+|++++||+++.|+.|++||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEE
Q 005254 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVV 212 (706)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 212 (706)
+++.+..+.+|...|.+++|+|+++..++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|+++++++++.||.|
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 99999999999999999999998887789999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCcceeeecCcc--------------eeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEE
Q 005254 213 NLWDLRDYSCKLTVPTYE--------------MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278 (706)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 278 (706)
++||+.+++....+.... .+..+.+++++. .+++++ ++.+.+
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-----------------------~l~~~~-~~~v~~ 823 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD-----------------------KIIVAA-KNKVLL 823 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS-----------------------EEEEEE-TTEEEE
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCC-----------------------EEEEEc-CCcEEE
Confidence 999999887766654332 233334444442 444444 789999
Q ss_pred EECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeE
Q 005254 279 WNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 358 (706)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 358 (706)
|+..++...... ...+...+..+.++|++..+++++.++.+.+|+.... .....+.+|...+.+
T Consensus 824 ~d~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~ 887 (1249)
T 3sfz_A 824 FDIHTSGLLAEI---------HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-------LKVADCRGHLSWVHG 887 (1249)
T ss_dssp EETTTCCEEEEE---------ECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-------EEEEEECCCSSCEEE
T ss_pred EEecCCCceeEE---------cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-------ceeeecCCCccceEE
Confidence 999887544332 1245677899999999999999999999999998753 234556789999999
Q ss_pred eeEeCCCCcEEEEEecCCcEEEEeCCCcee-----------------------------eEe--------eeCCcceEEE
Q 005254 359 LKFLGEEEQYLAVATNIEQVQVYDLSSMSC-----------------------------SYV--------LAGHSEIVLC 401 (706)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~-----------------------------~~~--------~~~~~~~i~~ 401 (706)
++|.| ++..+++++.++.+++|++.+... ... ...+...+.+
T Consensus 888 v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 966 (1249)
T 3sfz_A 888 VMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC 966 (1249)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred EEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence 99987 778899999999999999653210 000 0112345667
Q ss_pred eeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcc
Q 005254 402 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481 (706)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 481 (706)
+. ++|+++. +++|+.+|.|++||+.+++....+..|...|.+++|+|+++ ++++++.||.|++|++..+
T Consensus 967 ~~--~sp~g~~-l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~i~vwd~~~~------- 1035 (1249)
T 3sfz_A 967 CC--LSPHLEY-VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK-TLISSSEDSVIQVWNWQTG------- 1035 (1249)
T ss_dssp EE--ECTTSSE-EEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS-CEEEECSSSBEEEEETTTT-------
T ss_pred EE--EcCCCCE-EEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCC-------
Confidence 76 7888887 99999999999999999999999999999999999999988 8999999999999999865
Q ss_pred cccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEE
Q 005254 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIK 561 (706)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 561 (706)
.......|...+.+++++|++ .+++++.||.|++||+.+++....+.+|...|++++|+|++++|++++.||.|+
T Consensus 1036 ----~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~ 1110 (1249)
T 3sfz_A 1036 ----DYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAK 1110 (1249)
T ss_dssp ----EEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCC
T ss_pred ----ceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence 233455788999999999976 577888999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEe---------ccCCCcEEEEEEcCCC
Q 005254 562 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY---------DKHEDKIWALAVGKKT 632 (706)
Q Consensus 562 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~s~~~ 632 (706)
+||+.+++++..+.+|...|++++|+|+|++|++++.||.|++||+.+++.+..+ ..|.+.|++++|+||+
T Consensus 1111 iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg 1190 (1249)
T 3sfz_A 1111 IWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDS 1190 (1249)
T ss_dssp EECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTS
T ss_pred EEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999887665 5789999999999999
Q ss_pred CEEEEEeCCCcEEEEECCchhH
Q 005254 633 EMFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 633 ~~l~~~~~dg~i~vw~~~~~~~ 654 (706)
++|++++ |.|++||+.++..
T Consensus 1191 ~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1191 KTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp SCEEEES--SSEEEBCSSSCBC
T ss_pred CEEEECC--CeEEEEECCCCce
Confidence 9999885 8999999988765
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-62 Score=520.85 Aligned_cols=561 Identities=12% Similarity=0.096 Sum_probs=420.0
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
+++|+|||++||+++.+ .|+|||..+.+....+. |..+|.+++|+| |++|++++.|+.|++||+.+++++..+. |.
T Consensus 22 ~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~ 98 (902)
T 2oaj_A 22 AAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VP 98 (902)
T ss_dssp EEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CS
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CC
Confidence 89999999999999877 89999998887766554 788999999999 8899999999999999999999999887 77
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE-----------EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT-----------HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
..|++++|+|++++|++|+.||.|++||+++++.. ..+.+|.++|.+++|+|++ ...+++|+.||.|
T Consensus 99 ~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v- 176 (902)
T 2oaj_A 99 GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL- 176 (902)
T ss_dssp SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-
T ss_pred CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-
Confidence 89999999999999999999999999999998764 2346799999999999963 2358899999999
Q ss_pred EEECCCCeeEEEeecc------------------cceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC-----
Q 005254 172 VWDLLAKKCVATLDKH------------------FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT----- 228 (706)
Q Consensus 172 vwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~----- 228 (706)
+||+++++.+..+..| ...|.+++|+|+|++|++++.||.|++||+++++.+.....
T Consensus 177 lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~ 256 (902)
T 2oaj_A 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEI 256 (902)
T ss_dssp EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCT
T ss_pred EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeeccccc
Confidence 9999999998888765 47799999999999999999999999999998876543111
Q ss_pred cceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCcccee
Q 005254 229 YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFT 308 (706)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (706)
+... ... ......+...+.
T Consensus 257 ~~~~-------~~~------------------------------------------------------~~~~~~~~~~V~ 275 (902)
T 2oaj_A 257 NVPQ-------PDY------------------------------------------------------IRDSSTNAAKIS 275 (902)
T ss_dssp TSCC-------TTC------------------------------------------------------CCCCSSCCCEEE
T ss_pred CCCC-------CcC------------------------------------------------------CCCCccccCCee
Confidence 0000 000 000000112334
Q ss_pred EEEEcc----CCCeeE-EEeeC-----CceEEEEeeeccccc----------e-eeEEeeEe-cccCceeeEeeEeC---
Q 005254 309 AATVLP----SNQGLL-CVTAD-----QQLLLYTTVEVPEKK----------M-ELILSKRL-VGYNEEILDLKFLG--- 363 (706)
Q Consensus 309 ~~~~~~----~~~~l~-~~~~~-----~~~~~~~~~~~~~~~----------~-~~~~~~~~-~~~~~~v~~~~~~~--- 363 (706)
.+++.+ ++..++ +++.+ ..+.+|+....+... . .......+ ..+...+.++.+.+
T Consensus 276 ~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~s 355 (902)
T 2oaj_A 276 KVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQS 355 (902)
T ss_dssp EEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSC
T ss_pred EEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCC
Confidence 444432 222222 22222 245555432110000 0 00001111 13456777777765
Q ss_pred ------CCCcEEEEEecCCcEEEEeCCCceeeEe-------eeCCcceEEEeee--------------------------
Q 005254 364 ------EEEQYLAVATNIEQVQVYDLSSMSCSYV-------LAGHSEIVLCLDT-------------------------- 404 (706)
Q Consensus 364 ------~~~~~l~~~~~~~~i~~~d~~~~~~~~~-------~~~~~~~i~~~~~-------------------------- 404 (706)
.+...+++++.++.+++|++.++..... +..|...+.++.+
T Consensus 356 p~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~ 435 (902)
T 2oaj_A 356 PYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGV 435 (902)
T ss_dssp SHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSB
T ss_pred CCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCc
Confidence 2344788888999999999977643221 3344455555442
Q ss_pred ------eeecCCCEEEEEeeCCCcEEEEeCCCceEE----EE--Ee-----CCCcCeEEEEEecCCCeEEEEecCCCeEE
Q 005254 405 ------CALSSGKILIVTGSKDNSVRLWDSESRCCV----GV--GT-----GHMGAVGAVAFSKKLQNFLVSGSSDHTIK 467 (706)
Q Consensus 405 ------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~--~~-----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 467 (706)
.++|+++ ++++|+.|++|++||+.++... .. +. +|...|.+++|+|+++ +|++|+.||+|+
T Consensus 436 ~~v~sv~~spdg~-~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs~DgtV~ 513 (902)
T 2oaj_A 436 RTKRQKLPAEYGT-AFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSIETGDVV 513 (902)
T ss_dssp CCCCCCCCCSEEE-EEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEETTSCEE
T ss_pred CCCCcccccccCc-EEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEecCcEEE
Confidence 1345454 4999999999999999877421 11 11 7888999999999998 899999999999
Q ss_pred EEEecCCCCCCC-----------------------------------cccccceeEEEeecCcceEEEEEcCCCCEEEEe
Q 005254 468 VWSFDGLSDDAE-----------------------------------QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (706)
Q Consensus 468 i~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (706)
+|++...+.... ......+...+..|...|++++|+||| +||+|
T Consensus 514 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsg 592 (902)
T 2oaj_A 514 LFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIA 592 (902)
T ss_dssp EEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEE
T ss_pred EEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEE
Confidence 999986531000 000112356677899999999999999 99999
Q ss_pred eCCCcEEEEeCCCccEEEE-----Ee-ecCCcEEEEEEc-----cCC---CEEEEecCCCcEEEEEc---CCCceEEEEe
Q 005254 513 SQDRTACVWRLPDLVSVVT-----FR-GHKRGIWSVEFS-----PVD---QVVITASGDKTIKIWSI---SDGSCLKTFE 575 (706)
Q Consensus 513 ~~dg~i~i~d~~~~~~~~~-----~~-~~~~~v~~~~~s-----~~~---~~l~~~~~dg~i~iwd~---~~~~~~~~~~ 575 (706)
+.|++|++||+.+...+.. +. +|...|++++|+ ||| ++|++++.|++|++||+ .+|+....+.
T Consensus 593 s~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~ 672 (902)
T 2oaj_A 593 YAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLM 672 (902)
T ss_dssp ETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEE
T ss_pred eCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEec
Confidence 9999999999988776542 22 788999999999 885 89999999999999999 7888888888
Q ss_pred ecc-----cCEEEEE-EE----------------------eCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEE-
Q 005254 576 GHT-----SSVLRAS-FL----------------------TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL- 626 (706)
Q Consensus 576 ~~~-----~~i~~~~-~s----------------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~- 626 (706)
+|. ++|..+. |+ +++..|+++ +..|++|++.++++.+....|...+.++
T Consensus 673 ~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v~ 750 (902)
T 2oaj_A 673 DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKYPLAATGLS 750 (902)
T ss_dssp EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSSCEEEEEEE
T ss_pred CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcccceeeeEEE
Confidence 774 6777776 66 455444444 7789999999999998887777666676
Q ss_pred --E------EcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 627 --A------VGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 627 --~------~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
. |++++..|++++.||.|++|++.+.++.
T Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~ 787 (902)
T 2oaj_A 751 YISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQ 787 (902)
T ss_dssp EEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEeccccccccCceEEEEEeCCCcEEEEECcchHHH
Confidence 5 7889999999999999999999888754
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.2e-60 Score=495.98 Aligned_cols=522 Identities=16% Similarity=0.180 Sum_probs=451.1
Q ss_pred cCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC----eEEEEeeccCCC-eEEEEECC--CCCEEEEecCCCcEEEE
Q 005254 57 EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL----KCLRSWKGHDGP-AIGMACHP--SGGLLATAGADRKVLVW 129 (706)
Q Consensus 57 ~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~-v~~~~~s~--~~~~l~~~~~d~~i~vw 129 (706)
..|...|++++|+|+|++||+++ ++.|++||+.++ +.+..+.+|... |.+++|+| ++++|++++.|+.|++|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 35788999999999999999998 789999999999 899999999999 99999999 99999999999999999
Q ss_pred ECCCC--------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecC----CeEEEEECCCCeeEEEeecccceEEEEEEe
Q 005254 130 DVDGG--------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD----ATVRVWDLLAKKCVATLDKHFSRVTSMAIT 197 (706)
Q Consensus 130 ~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 197 (706)
|+.++ +....+..|...|.+++|+|+++. +++++.+ +.|++|| .++.+..+.+|...|.+++|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~ 169 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR--LCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLK 169 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE--EEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEEC
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCE--EEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEEC
Confidence 99754 777888899999999999999876 8888877 6888887 677888999999999999999
Q ss_pred cCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcc----eeeeEEeeCC-CCCcccccccccchhhhccccccceEEEEec
Q 005254 198 SDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYE----MVEAVCAIPP-GSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 271 (706)
Q Consensus 198 ~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (706)
|+++ .+++++.|+.|++||+.+++....+..+. .+..+.+.++ +. .+++++
T Consensus 170 ~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------------~l~~~~ 226 (615)
T 1pgu_A 170 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE-----------------------FVITVG 226 (615)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC-----------------------EEEEEE
T ss_pred CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCC-----------------------EEEEEe
Confidence 9998 89999999999999999999888877543 5888999888 65 789999
Q ss_pred CCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecc
Q 005254 272 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 351 (706)
Q Consensus 272 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (706)
.+|.|++||+.++........ ....+...+..+.+. ++..+++++.++.+.+|+....... .........
T Consensus 227 ~dg~i~vwd~~~~~~~~~~~~------~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~---~~~~~~~~~ 296 (615)
T 1pgu_A 227 SDRKISCFDGKSGEFLKYIED------DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV---QKWTLDKQQ 296 (615)
T ss_dssp TTCCEEEEETTTCCEEEECCB------TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE---EEEECCTTC
T ss_pred CCCeEEEEECCCCCEeEEecc------cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE---EEEcCCCCc
Confidence 999999999988754433210 001456778999999 9999999999999999998753210 000000012
Q ss_pred cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 352 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
....+..+.+. ++..+++++.++.+++||+.+++....+.+|...+.++. + |+ +++++.||.|++|++.
T Consensus 297 ~~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~--~-~~----l~~~~~dg~i~~w~~~-- 365 (615)
T 1pgu_A 297 LGNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALT--V-NP----LISGSYDGRIMEWSSS-- 365 (615)
T ss_dssp GGGCEEEEEEE--ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEE--T-TT----TEEEETTSCEEETTTT--
T ss_pred ccCceeEEEeC--CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEE--e-cC----cEEECCCCeEEEEEch--
Confidence 34566777774 788999999999999999999999999999999999998 6 55 8999999999999998
Q ss_pred eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE
Q 005254 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (706)
.+. ..|...|.+++| +++. .+++++.|+.+++|++..... ...+.+++++|++.++++
T Consensus 366 -~~~--~~~~~~v~~~~~-~~~~-~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~~~~~s~~~~~~~~ 423 (615)
T 1pgu_A 366 -SMH--QDHSNLIVSLDN-SKAQ-EYSSISWDDTLKVNGITKHEF-----------------GSQPKVASANNDGFTAVL 423 (615)
T ss_dssp -EEE--CCCCSCEEEEEC-CSTT-CCEEEETTTEEEETTEEEEEC-----------------SSCEEEEEECSSSEEEEE
T ss_pred -hhc--CcccCceEEEEE-CCCc-EEEEEeCCCCEEEEEcccCcc-----------------cCCceEEEEcCCCCEEEE
Confidence 333 789999999999 4444 799999999999999875321 115788999999988888
Q ss_pred eeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CCcEEEEEcCCCceE-EEEeecccCEEEEEEEeC
Q 005254 512 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCL-KTFEGHTSSVLRASFLTR 589 (706)
Q Consensus 512 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~~ 589 (706)
+ .++.+.+|++.+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.+++.. ..+.+|...|++++|+|+
T Consensus 424 ~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 499 (615)
T 1pgu_A 424 T-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 499 (615)
T ss_dssp E-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTT
T ss_pred e-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCC
Confidence 7 78899999999999888887 88999999999 889999999 999999999887665 667789999999999999
Q ss_pred CCEEEEEeCCCCEEEEECCCCeEEEEecc-CCCcEEEEEEcC----------CCCEEEEEeCCCcEEEEECCchh
Q 005254 590 GAQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGK----------KTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 590 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~----------~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+++|++++.||.|++||+.+++++..+.+ |...|++++|+| ++++|++++.||.|++|++.++.
T Consensus 500 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 574 (615)
T 1pgu_A 500 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 574 (615)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred CCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc
Confidence 99999999999999999999999999988 999999999999 99999999999999999998763
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-59 Score=501.15 Aligned_cols=519 Identities=13% Similarity=0.101 Sum_probs=382.6
Q ss_pred ecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe
Q 005254 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF 135 (706)
Q Consensus 56 l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 135 (706)
..+|...|++++|+|++++||+|+.||.|+|||..+.+....+. |..+|.+++|+| +++|++++.|++|++||+.+++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 34799999999999999999999999999999999888776655 788999999999 8899999999999999999999
Q ss_pred EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeE-----------EEeecccceEEEEEEecC-CCEE
Q 005254 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV-----------ATLDKHFSRVTSMAITSD-GSTL 203 (706)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l 203 (706)
.+..+. |...|++++|+|+++. +++|+.||.|++||+++++.. ..+.+|.+.|.+++|+|+ +..+
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g~~--l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASLDW--MLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTCSE--EEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred EEEEEc-CCCCEEEEEECCCCCE--EEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 988886 7789999999999876 999999999999999988764 233568899999999996 4689
Q ss_pred EEEeCCCEEEEEeCCCCcceeeecCc-------------------ceeeeEEeeCCCCCcccccccccchhhhccccccc
Q 005254 204 ISAGRDKVVNLWDLRDYSCKLTVPTY-------------------EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264 (706)
Q Consensus 204 ~~~~~dg~i~~w~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
++++.||.| +||+++++....+..+ ..+..+.++|++.
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~---------------------- 224 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL---------------------- 224 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS----------------------
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC----------------------
Confidence 999999999 9999998877666543 2345555555543
Q ss_pred eEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeE
Q 005254 265 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 344 (706)
Q Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (706)
.+++++.||.|++||..++........... ..+.. ...
T Consensus 225 -~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~-----~~~~~--------------------------------~~~---- 262 (902)
T 2oaj_A 225 -HIITIHEDNSLVFWDANSGHMIMARTVFET-----EINVP--------------------------------QPD---- 262 (902)
T ss_dssp -EEEEEETTCCEEEEETTTCCEEEEECSSCS-----CTTSC--------------------------------CTT----
T ss_pred -EEEEEECCCeEEEEECCCCcEEEEEeeccc-----ccCCC--------------------------------CCc----
Confidence 455556666666666554422211000000 00000 000
Q ss_pred EeeEecccCceeeEeeEeCC----CCcEEEEEecC-----CcEEEEeCC------------------CceeeEeee-CCc
Q 005254 345 LSKRLVGYNEEILDLKFLGE----EEQYLAVATNI-----EQVQVYDLS------------------SMSCSYVLA-GHS 396 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~~-----~~i~~~d~~------------------~~~~~~~~~-~~~ 396 (706)
.......+...|.+++|.+. +..++++++.+ ..+.+|++. +++....+. .+.
T Consensus 263 ~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 342 (902)
T 2oaj_A 263 YIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTN 342 (902)
T ss_dssp CCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSS
T ss_pred CCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCC
Confidence 00000013457889999642 23567777554 378888842 122233333 345
Q ss_pred ceEEEeeeeeec---------CCCEEEEEeeCCCcEEEEeCCCceEEEE-------E-----------------------
Q 005254 397 EIVLCLDTCALS---------SGKILIVTGSKDNSVRLWDSESRCCVGV-------G----------------------- 437 (706)
Q Consensus 397 ~~i~~~~~~~~~---------~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~----------------------- 437 (706)
..+..+. +.+ .+...+++++.||.|++||+.++..... +
T Consensus 343 ~~v~~~~--~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~ 420 (902)
T 2oaj_A 343 VPIVNIL--PIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA 420 (902)
T ss_dssp SCEEEEE--ECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHH
T ss_pred CceEEEE--ECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHH
Confidence 5666554 332 1222478888999999999977643321 1
Q ss_pred -----------eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE-E-----eecCcceEEE
Q 005254 438 -----------TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV-V-----AAHGKDINSL 500 (706)
Q Consensus 438 -----------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~i~~~ 500 (706)
.+|...+.+++|+|+++ +|++++.|++|++||+..+..... ..... + .+|...|.++
T Consensus 421 ~~~~~~~~~~l~G~~~~v~sv~~spdg~-~laSgs~DgtVrlWd~~~g~~~~~-----~~~~~~l~~~~~~~h~~~V~sv 494 (902)
T 2oaj_A 421 LSAAQNKDYLLKGGVRTKRQKLPAEYGT-AFITGHSNGSVRIYDASHGDIQDN-----ASFEVNLSRTLNKAKELAVDKI 494 (902)
T ss_dssp HHTTBCCCCSCCCSBCCCCCCCCCSEEE-EEEEEETTSEEEEEESSCCTTTTT-----BCEEEEHHHHTTCSSSCCEEEE
T ss_pred HhcccCCCCcccCCcCCCCcccccccCc-EEEEecCCCcEEEEECCCccccCC-----ceEEeechhhcCCCCCCceeEE
Confidence 22333444455677766 899999999999999987632110 00111 1 1688899999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCcc---------------------------------------------EEEEEeec
Q 005254 501 AVAPNDSLVCTGSQDRTACVWRLPDLV---------------------------------------------SVVTFRGH 535 (706)
Q Consensus 501 ~~s~~~~~l~~~~~dg~i~i~d~~~~~---------------------------------------------~~~~~~~~ 535 (706)
+|+||+++||+|+.||+|++||+.+++ ++..+.+|
T Consensus 495 afspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h 574 (902)
T 2oaj_A 495 SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN 574 (902)
T ss_dssp EEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC
T ss_pred EecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC
Confidence 999999999999999999999997652 36778889
Q ss_pred CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE-----Ee-ecccCEEEEEEE-----eCC---CEEEEEeCCCC
Q 005254 536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-----FE-GHTSSVLRASFL-----TRG---AQIVSCGADGL 601 (706)
Q Consensus 536 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~-~~~~~i~~~~~s-----~~~---~~l~~~~~dg~ 601 (706)
.+.|++++||||| +||+|+.|++|++||++++..+.. +. +|...|++++|+ ||| ++|++|+.|++
T Consensus 575 ~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t 653 (902)
T 2oaj_A 575 KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE 653 (902)
T ss_dssp SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE
T ss_pred CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc
Confidence 9999999999999 999999999999999988776542 32 788999999999 885 89999999999
Q ss_pred EEEEEC---CCCeEEEEeccCC-----CcEEEEE-Ec----------------------CCCCEEEEEeCCCcEEEEECC
Q 005254 602 VKLWTV---RTGECIATYDKHE-----DKIWALA-VG----------------------KKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 602 i~iwd~---~~~~~~~~~~~~~-----~~v~~~~-~s----------------------~~~~~l~~~~~dg~i~vw~~~ 650 (706)
|++||+ .+|+.+..+.+|. ++|.++. |+ +++..|++ + +..|++|++.
T Consensus 654 v~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~-~~~ir~~~~~ 731 (902)
T 2oaj_A 654 VITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-G-FDDIRLITLG 731 (902)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-C-SSEEEEECTT
T ss_pred EEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE-e-ccceEEEeCc
Confidence 999999 8899888887764 6777776 65 44544443 3 7789999999
Q ss_pred chhHH
Q 005254 651 TAAER 655 (706)
Q Consensus 651 ~~~~~ 655 (706)
+++..
T Consensus 732 ~~k~~ 736 (902)
T 2oaj_A 732 KSKST 736 (902)
T ss_dssp CCCEE
T ss_pred cccce
Confidence 86543
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-52 Score=456.36 Aligned_cols=457 Identities=18% Similarity=0.244 Sum_probs=386.0
Q ss_pred eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
+..+.+.+|...|++++|+|++++||+++.+|.|+|||+.+++.+..+.+|..+|.+++|+|++++|++++.||.|++||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC-eeEEEeecccceEEEEEEec-CCCEEEEEeC
Q 005254 131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-KCVATLDKHFSRVTSMAITS-DGSTLISAGR 208 (706)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 208 (706)
+.+++.+..+.+|...|.+++|+|+++. +++++.||.|++||+.++ .....+.+|...|.+++|+| ++..+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPY--VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSE--EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCCCE--EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 9999999999999999999999999876 999999999999999887 67778889999999999999 8889999999
Q ss_pred CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 209 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
||.|++||+.++.....+..
T Consensus 162 dg~v~vwd~~~~~~~~~~~~------------------------------------------------------------ 181 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTT------------------------------------------------------------ 181 (814)
T ss_dssp TSEEEEEETTCSSCSEEEEC------------------------------------------------------------
T ss_pred CCeEEEEECCCCcceeEEec------------------------------------------------------------
Confidence 99999999876543322211
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeC-CCCc
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG-EEEQ 367 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 367 (706)
.+...+..++|.| +++.
T Consensus 182 --------------------------------------------------------------~~~~~v~~~~~~~~~~~~ 199 (814)
T 3mkq_A 182 --------------------------------------------------------------GQERGVNYVDYYPLPDKP 199 (814)
T ss_dssp --------------------------------------------------------------CCTTCCCEEEECCSTTCC
T ss_pred --------------------------------------------------------------CCCCCEEEEEEEECCCCC
Confidence 1123455556655 3677
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
++++++.++.+++||+.+++....+.+|...+.++. ++|++.. +++++.||.|++||..+++.+..+..+...+.++
T Consensus 200 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~ 276 (814)
T 3mkq_A 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV--FHPTLPI-IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276 (814)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEE--ECSSSSE-EEEEETTSCEEEEETTTCSEEEEECCSSSSEEEE
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEE--EcCCCCE-EEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEE
Confidence 899999999999999999999999999999999998 8888886 9999999999999999999999999999999999
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecCCCCCCCccc---------------------------------ccceeEEEeecC
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM---------------------------------NLKAKAVVAAHG 494 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~ 494 (706)
+|+|++..++++.+.++.+.+|++........... ..........+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (814)
T 3mkq_A 277 ATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVD 356 (814)
T ss_dssp EECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCS
T ss_pred EEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCc
Confidence 99999876656666677889998765321110000 000112233455
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEE
Q 005254 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574 (706)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 574 (706)
..+.+++|+|+|+++++++ ++.+.+|++...... +.+.+.+++|+|+++++++++.+|.|++|+. +
T Consensus 357 ~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~ 422 (814)
T 3mkq_A 357 VFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------F 422 (814)
T ss_dssp SCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECTTCCEEEEET--------T
T ss_pred cCCceeEECCCCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------C
Confidence 6789999999999999998 899999998755432 3456889999999999999999999999963 3
Q ss_pred eecccCEEEEEEEeCC---CEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE------eCCCcEE
Q 005254 575 EGHTSSVLRASFLTRG---AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG------GSDALVN 645 (706)
Q Consensus 575 ~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~------~~dg~i~ 645 (706)
.+|...+.++.|+|++ ++|++++.|+.|++||+.+++.+..+..|.. .+.|+|||++|+++ +.++.+.
T Consensus 423 ~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~ 499 (814)
T 3mkq_A 423 KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYT 499 (814)
T ss_dssp EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEE
T ss_pred CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEE
Confidence 5677888999999998 6899999999999999999999999988765 89999999999999 6555444
Q ss_pred EEECCch
Q 005254 646 LWHDSTA 652 (706)
Q Consensus 646 vw~~~~~ 652 (706)
+| ...+
T Consensus 500 ~~-~~~~ 505 (814)
T 3mkq_A 500 LL-FNKD 505 (814)
T ss_dssp EE-ECHH
T ss_pred EE-echH
Confidence 44 4433
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.5e-51 Score=441.37 Aligned_cols=476 Identities=14% Similarity=0.163 Sum_probs=391.4
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
+++|+|||++||+++.+ .|.|||+.+++.+..+.+|..+|++++|+|++++|++++.||.|++||+.+++.+..+.+|.
T Consensus 18 ~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 97 (814)
T 3mkq_A 18 GIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP 97 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC
Confidence 79999999999999876 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCC-eEEEEeeCCCCcEEEEEEcC-CCCceEEEEEecCCeEEEEECCCCee
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFHP-DTDKSLLFSGSDDATVRVWDLLAKKC 180 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~ 180 (706)
..|.+++|+|++++|++++.|+.|++||++++ .....+.+|...|.+++|+| +++ .+++++.||.|++||+.+++.
T Consensus 98 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~~~~~dg~v~vwd~~~~~~ 175 (814)
T 3mkq_A 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS--TFASGCLDRTVKVWSLGQSTP 175 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE--EEEEEETTSEEEEEETTCSSC
T ss_pred CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCcc
Confidence 99999999999999999999999999999987 77788889999999999999 554 499999999999999998887
Q ss_pred EEEeeccc-ceEEEEEEec--CCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhh
Q 005254 181 VATLDKHF-SRVTSMAITS--DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK 257 (706)
Q Consensus 181 ~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (706)
...+..+. ..+.+++|+| ++.+|++++.||.|++||+.+++....+
T Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------------------------------- 224 (814)
T 3mkq_A 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL------------------------------- 224 (814)
T ss_dssp SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE-------------------------------
T ss_pred eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-------------------------------
Confidence 77776555 8999999999 9999999999999999998765533221
Q ss_pred ccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecc
Q 005254 258 KKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337 (706)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 337 (706)
T Consensus 225 -------------------------------------------------------------------------------- 224 (814)
T 3mkq_A 225 -------------------------------------------------------------------------------- 224 (814)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEe
Q 005254 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 417 (706)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 417 (706)
.++...+.+++|.| ++.++++++.+|.|++||+.+++....+..+...+.++. +.|++..++++.
T Consensus 225 ------------~~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~ 289 (814)
T 3mkq_A 225 ------------EGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA--THPTGRKNYIAS 289 (814)
T ss_dssp ------------ECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEE--ECTTCGGGEEEE
T ss_pred ------------cCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEE--EccCCCceEEEE
Confidence 23445667777776 667899999999999999999999999999999999998 888887644555
Q ss_pred eCCCcEEEEeCCCce----------EEE---------------------------------EEeCCCcCeEEEEEecCCC
Q 005254 418 SKDNSVRLWDSESRC----------CVG---------------------------------VGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 418 ~~dg~i~i~d~~~~~----------~~~---------------------------------~~~~~~~~v~~~~~~~~~~ 454 (706)
+.++.+.+|++.... .+. ....+...+.+++|+|+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 369 (814)
T 3mkq_A 290 GFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGR 369 (814)
T ss_dssp EETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSS
T ss_pred EeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCC
Confidence 557778888865432 111 1123445678999999988
Q ss_pred eEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee
Q 005254 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534 (706)
Q Consensus 455 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 534 (706)
++++++ ++.+.+|++... . ..+...+.+++|+|+++++++++.+|.|++|+. +.+
T Consensus 370 -~la~~~-~~~~~i~~~~~~-----------~----~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~ 424 (814)
T 3mkq_A 370 -FVTVVG-DGEYVIYTALAW-----------R----NKAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKE 424 (814)
T ss_dssp -EEEEEE-TTEEEEEETTTT-----------E----EEEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEE
T ss_pred -EEEEec-CCEEEEEECccc-----------c----ccCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCC
Confidence 677776 899999997532 1 112356889999999999999999999999963 356
Q ss_pred cCCcEEEEEEccCC---CEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEE------eCCCCEEEE
Q 005254 535 HKRGIWSVEFSPVD---QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC------GADGLVKLW 605 (706)
Q Consensus 535 ~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~------~~dg~i~iw 605 (706)
|...+.+++|+|++ ..|++++.|+.|++||+.+++.+..+..|.. .+.|+|||++|+++ +.++.+.+|
T Consensus 425 ~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 425 VTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp CTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred ccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 88889999999998 6889999999999999999999999987765 89999999999999 554444343
Q ss_pred E-----------------------------------------------CCCCeE-------EEEeccCCCcEEEEEEcCC
Q 005254 606 T-----------------------------------------------VRTGEC-------IATYDKHEDKIWALAVGKK 631 (706)
Q Consensus 606 d-----------------------------------------------~~~~~~-------~~~~~~~~~~v~~~~~s~~ 631 (706)
. ...++. ...+.....++..+.|.++
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (814)
T 3mkq_A 502 FNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLAR 581 (814)
T ss_dssp ECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEEEEETTEEEEEEECSSCCEEEEEEGG
T ss_pred echHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEEeCCEEEEEcCCCeEEEEeCCeeEEEEECCccEEEEEEEec
Confidence 2 100110 1111123445556667788
Q ss_pred CCEEEEEeCCCcEEEEECCchhHH
Q 005254 632 TEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 632 ~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
++.++....++.+..|++......
T Consensus 582 ~~~l~~~d~~~~~~~~~l~~~~~~ 605 (814)
T 3mkq_A 582 DNKVYLADREVHVYGYEISLEVLE 605 (814)
T ss_dssp GTEEEEECTTCCEEEEECCHHHHH
T ss_pred CCEEEEEcCCCCEEEEEECcHHHH
Confidence 888988999999999999876544
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.1e-47 Score=373.14 Aligned_cols=310 Identities=25% Similarity=0.474 Sum_probs=265.7
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
...+.+|..+|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEE
Q 005254 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVV 212 (706)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 212 (706)
+++++..+.+|...|.+++|+|+++. +++|+.|+.|++||++++.++..+.+|...|.++.|+|++.+|++++.|+.|
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~--l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDH--IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCE--EEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 99999999999999999999998876 9999999999999999999999999999999999999999999999999988
Q ss_pred EEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccC
Q 005254 213 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292 (706)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 292 (706)
++||+.+++..
T Consensus 259 ~vwd~~~~~~~--------------------------------------------------------------------- 269 (410)
T 1vyh_C 259 RVWVVATKECK--------------------------------------------------------------------- 269 (410)
T ss_dssp EEEETTTCCEE---------------------------------------------------------------------
T ss_pred EEEECCCCcee---------------------------------------------------------------------
Confidence 88887543211
Q ss_pred ccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEE
Q 005254 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372 (706)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 372 (706)
T Consensus 270 -------------------------------------------------------------------------------- 269 (410)
T 1vyh_C 270 -------------------------------------------------------------------------------- 269 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecC
Q 005254 373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 452 (706)
Q Consensus 373 ~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (706)
..+..|...|.+++|+|+
T Consensus 270 --------------------------------------------------------------~~~~~h~~~v~~~~~~~~ 287 (410)
T 1vyh_C 270 --------------------------------------------------------------AELREHRHVVECISWAPE 287 (410)
T ss_dssp --------------------------------------------------------------EEECCCSSCEEEEEECCS
T ss_pred --------------------------------------------------------------eEecCCCceEEEEEEcCc
Confidence 111233444555555554
Q ss_pred CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEE
Q 005254 453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 532 (706)
Q Consensus 453 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 532 (706)
+... ......+ .......+++.+|++|+.|+.|++||+.++..+..+
T Consensus 288 ~~~~-~~~~~~~--------------------------------~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~ 334 (410)
T 1vyh_C 288 SSYS-SISEATG--------------------------------SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334 (410)
T ss_dssp CGGG-GGGGCCS--------------------------------CC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred cccc-chhhhcc--------------------------------ccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 3310 0000000 000112235789999999999999999999999999
Q ss_pred eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 533 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
.+|...|.+++|+|++++|++++.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||.|++|+++
T Consensus 335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999863
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-45 Score=348.03 Aligned_cols=290 Identities=24% Similarity=0.384 Sum_probs=267.8
Q ss_pred eEecccCceeeEeeEeCC---CCcEEEEEecCCcEEEEeCCCcee--eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCC
Q 005254 347 KRLVGYNEEILDLKFLGE---EEQYLAVATNIEQVQVYDLSSMSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 421 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg 421 (706)
....+|.+.|.+++|.++ ++.++++++.|+.|++|++..... ...+.+|...+.+++ +.+++.. +++++.|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~--~~~~~~~-l~s~s~D~ 102 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVD--ISHTLPI-AASSSLDA 102 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE--ECSSSSE-EEEEETTS
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEE--ECCCCCE-EEEEeCCC
Confidence 456689999999999874 567999999999999999887654 456889999999998 7787776 99999999
Q ss_pred cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEE
Q 005254 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (706)
.|++||+.+++.+..+..+...+.+++|+|+++ +|++++.|+.|++|++.... ....+..+...+.+++
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~----------~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGK----------KEYSLDTRGKFILSIA 171 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCS----------EEEEEECSSSCEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCc----------eeEEecCCCceEEEEE
Confidence 999999999999999999999999999999988 89999999999999998653 4556677888999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCE
Q 005254 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581 (706)
Q Consensus 502 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 581 (706)
|+|++++|++++.||.|++||+.+++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+.++++...+.+|...|
T Consensus 172 ~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v 251 (321)
T 3ow8_A 172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 251 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.+++|+|++++|++++.|+.|++||+.+++++..+.+|.+.|.+++|+|++++|++++.||.|++||.+
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999974
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.5e-45 Score=344.31 Aligned_cols=292 Identities=20% Similarity=0.353 Sum_probs=258.4
Q ss_pred eEEEeecCCCccEEEEEEccC----CCEEEEEeccCeEEEEECCCCeE--EEEeeccCCCeEEEEECCCCCEEEEecCCC
Q 005254 51 SIKSTIEGGSDTITALALSPD----DKLLFSSGHSREIRVWDLSTLKC--LRSWKGHDGPAIGMACHPSGGLLATAGADR 124 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~~----~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 124 (706)
.....+++|.+.|.+++|+|+ +.+|++|+.|+.|+|||+.+++. ...+.+|...|.+++|+|++.++++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 344667899999999999985 67999999999999999987754 456889999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEE
Q 005254 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLI 204 (706)
Q Consensus 125 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 204 (706)
+|++||+.+++.+..+..|...+.+++|+|+++. +++++.||.|++||+++++....+..|...+.+++|+|++++|+
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~--l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la 180 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY--LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA 180 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSE--EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCE--EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEE
Confidence 9999999999999999999999999999999876 99999999999999999998888888888899999999888888
Q ss_pred EEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 205 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
+++.||.|++||++++
T Consensus 181 sg~~dg~i~iwd~~~~---------------------------------------------------------------- 196 (321)
T 3ow8_A 181 SGAIDGIINIFDIATG---------------------------------------------------------------- 196 (321)
T ss_dssp EEETTSCEEEEETTTT----------------------------------------------------------------
T ss_pred EEcCCCeEEEEECCCC----------------------------------------------------------------
Confidence 8888887777776432
Q ss_pred eEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC
Q 005254 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 364 (706)
T Consensus 197 -------------------------------------------------------------------------------- 196 (321)
T 3ow8_A 197 -------------------------------------------------------------------------------- 196 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 444 (706)
+.+..+..|...|
T Consensus 197 -------------------------------------------------------------------~~~~~~~~h~~~v 209 (321)
T 3ow8_A 197 -------------------------------------------------------------------KLLHTLEGHAMPI 209 (321)
T ss_dssp -------------------------------------------------------------------EEEEEECCCSSCC
T ss_pred -------------------------------------------------------------------cEEEEEcccCCce
Confidence 2222234566788
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
.+++|+|+++ +|++++.|+.|++||++... ....+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 210 ~~l~~spd~~-~l~s~s~dg~i~iwd~~~~~----------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 210 RSLTFSPDSQ-LLVTASDDGYIKIYDVQHAN----------LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp CEEEECTTSC-EEEEECTTSCEEEEETTTCC----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eEEEEcCCCC-EEEEEcCCCeEEEEECCCcc----------eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 8999999987 89999999999999997653 556778899999999999999999999999999999999
Q ss_pred CccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 525 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
+++.+..+.+|...|.+++|+|++++|++++.||.|++||..
T Consensus 279 ~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999999999963
No 16
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.6e-44 Score=346.42 Aligned_cols=290 Identities=23% Similarity=0.368 Sum_probs=257.3
Q ss_pred CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEE
Q 005254 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129 (706)
Q Consensus 50 ~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 129 (706)
.+....+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC----eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEE
Q 005254 130 DVDGG----FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLIS 205 (706)
Q Consensus 130 ~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 205 (706)
++.++ +....+.+|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|.+.|.+++|+|+++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 99875 45667889999999999998754 899999999999999999999999999999999999999999999
Q ss_pred EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCe
Q 005254 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 285 (706)
Q Consensus 206 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 285 (706)
++.|+.|++||++++.
T Consensus 202 g~~d~~v~~wd~~~~~---------------------------------------------------------------- 217 (340)
T 1got_B 202 GACDASAKLWDVREGM---------------------------------------------------------------- 217 (340)
T ss_dssp EETTSCEEEEETTTCS----------------------------------------------------------------
T ss_pred EeCCCcEEEEECCCCe----------------------------------------------------------------
Confidence 9999988888865321
Q ss_pred EEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCC
Q 005254 286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE 365 (706)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 365 (706)
T Consensus 218 -------------------------------------------------------------------------------- 217 (340)
T 1got_B 218 -------------------------------------------------------------------------------- 217 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeE
Q 005254 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG 445 (706)
Q Consensus 366 ~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 445 (706)
.+..+..|...|.
T Consensus 218 -------------------------------------------------------------------~~~~~~~h~~~v~ 230 (340)
T 1got_B 218 -------------------------------------------------------------------CRQTFTGHESDIN 230 (340)
T ss_dssp -------------------------------------------------------------------EEEEECCCSSCEE
T ss_pred -------------------------------------------------------------------eEEEEcCCcCCEE
Confidence 1112235677889
Q ss_pred EEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe--ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 005254 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 523 (706)
+++|+|++. ++++++.|+.|++||+.... ...... .+...|++++|+|+|++|++|+.||.|++||+
T Consensus 231 ~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 231 AICFFPNGN-AFATGSDDATCRLFDLRADQ----------ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEETTTTE----------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEcCCCC-EEEEEcCCCcEEEEECCCCc----------EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence 999999987 89999999999999997642 222222 22347999999999999999999999999999
Q ss_pred CCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 524 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
.+++....+.+|...|.+++|+|++.+|++|+.|+.|++||
T Consensus 300 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999999999999996
No 17
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-44 Score=362.55 Aligned_cols=358 Identities=16% Similarity=0.200 Sum_probs=294.4
Q ss_pred cCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCC-EEEEecCCCcEEEEEC----CCCe------EEEEeeC-------
Q 005254 81 SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDV----DGGF------CTHYFKG------- 142 (706)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~----~~~~------~~~~~~~------- 142 (706)
...+.+|+++..........|...|.+++|+|+++ +||+++.|+.|++|++ .+++ ....+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 24 NSIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103 (425)
T ss_dssp ----------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred ccccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc
Confidence 33456888877766666666889999999999999 9999999999999999 8888 4555554
Q ss_pred ---CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 143 ---HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 143 ---~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
|...|.+++|+|+++. +++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 104 ~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNS--IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS 180 (425)
T ss_dssp ----CBCEEEEEECTTSSE--EEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred ccCCCCceEEEEEcCCCCE--EEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCC
Confidence 6889999999998876 99999999999999 67888889999999999999999999999999999999999876
Q ss_pred CcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccc
Q 005254 220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 299 (706)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 299 (706)
++....+....
T Consensus 181 ~~~~~~~~~~~--------------------------------------------------------------------- 191 (425)
T 1r5m_A 181 GTVMQHFELKE--------------------------------------------------------------------- 191 (425)
T ss_dssp TEEEEEECCC----------------------------------------------------------------------
T ss_pred CcEEEEeeccc---------------------------------------------------------------------
Confidence 55433221100
Q ss_pred cCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEE
Q 005254 300 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379 (706)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 379 (706)
T Consensus 192 -------------------------------------------------------------------------------- 191 (425)
T 1r5m_A 192 -------------------------------------------------------------------------------- 191 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEE
Q 005254 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459 (706)
Q Consensus 380 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 459 (706)
.....+. . .........+.+++|++++ .+++
T Consensus 192 -----------------~~~~~~~----------~--------------------~~~~~~~~~~~~~~~~~~~--~~~~ 222 (425)
T 1r5m_A 192 -----------------TGGSSIN----------A--------------------ENHSGDGSLGVDVEWVDDD--KFVI 222 (425)
T ss_dssp -------------------------------------------------------------CCCBSCCEEEETT--EEEE
T ss_pred -----------------cCcccee----------e--------------------ccccCCcceeeEEEEcCCC--EEEE
Confidence 0000000 0 0001122347778888875 5889
Q ss_pred ecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcE
Q 005254 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI 539 (706)
Q Consensus 460 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 539 (706)
++.++.|++||+.... ....+..|...|.+++|+|++++|++++.||.|++||+.+++....+..|...|
T Consensus 223 ~~~~g~i~~~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i 292 (425)
T 1r5m_A 223 PGPKGAIFVYQITEKT----------PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSI 292 (425)
T ss_dssp ECGGGCEEEEETTCSS----------CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCE
T ss_pred EcCCCeEEEEEcCCCc----------eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccE
Confidence 9999999999998653 445566789999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe--------
Q 005254 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-------- 611 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-------- 611 (706)
.+++|+|++ ++++++.|+.|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++||+.+++
T Consensus 293 ~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 371 (425)
T 1r5m_A 293 VSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYG 371 (425)
T ss_dssp EEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-------
T ss_pred EEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeec
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999888
Q ss_pred ------------EEEEeccCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 612 ------------CIATYDKHED--KIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 612 ------------~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
++..+..|.. .|++++|+|++++|++++.||.|++|+++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 372 NRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8999999977 99999999999999999999999999986
No 18
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-45 Score=363.85 Aligned_cols=356 Identities=14% Similarity=0.187 Sum_probs=289.2
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEccCCC-EEEEEeccCeEEEEEC----CCCe------EEEEeec---------
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDK-LLFSSGHSREIRVWDL----STLK------CLRSWKG--------- 100 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~-~l~s~~~d~~i~iwd~----~~~~------~~~~~~~--------- 100 (706)
.+.+|+.+..........|...|++++|+|+++ +||+++.||.|++||+ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG 105 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence 456788776655555556779999999999999 9999999999999999 8888 5555554
Q ss_pred -cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe
Q 005254 101 -HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (706)
Q Consensus 101 -~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 179 (706)
|...|.+++|+|++++|++++.|+.|++|| .+++.+..+..|...|.+++|+|+++. +++++.||.|++||+.+++
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTH--IISMDVENVTILWNVISGT 182 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSE--EEEEETTCCEEEEETTTTE
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCE--EEEEecCCeEEEEECCCCc
Confidence 678999999999999999999999999999 678888899999999999999998876 9999999999999999998
Q ss_pred eEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcc
Q 005254 180 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK 259 (706)
Q Consensus 180 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (706)
.+..+..+......+.... .. +
T Consensus 183 ~~~~~~~~~~~~~~~~~~~-------~~-------------------------------~-------------------- 204 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAEN-------HS-------------------------------G-------------------- 204 (425)
T ss_dssp EEEEECCC------------------------------------------------------------------------
T ss_pred EEEEeeccccCccceeecc-------cc-------------------------------C--------------------
Confidence 8887765543211100000 00 0
Q ss_pred ccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecccc
Q 005254 260 RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK 339 (706)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 339 (706)
T Consensus 205 -------------------------------------------------------------------------------- 204 (425)
T 1r5m_A 205 -------------------------------------------------------------------------------- 204 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC
Q 005254 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 419 (706)
Q Consensus 340 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 419 (706)
....+.++. +.++ .. +++++.
T Consensus 205 -------------------------------------------------------~~~~~~~~~--~~~~-~~-~~~~~~ 225 (425)
T 1r5m_A 205 -------------------------------------------------------DGSLGVDVE--WVDD-DK-FVIPGP 225 (425)
T ss_dssp --------------------------------------------------------CCCBSCCE--EEET-TE-EEEECG
T ss_pred -------------------------------------------------------CcceeeEEE--EcCC-CE-EEEEcC
Confidence 000011111 3333 33 778888
Q ss_pred CCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEE
Q 005254 420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (706)
Q Consensus 420 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (706)
+|.|++||+.+++.+..+..|...|.+++|+|+++ ++++++.|+.|++||+.... ....+..|...|.+
T Consensus 226 ~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~----------~~~~~~~~~~~i~~ 294 (425)
T 1r5m_A 226 KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGN----------SQNCFYGHSQSIVS 294 (425)
T ss_dssp GGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSBS----------CSEEECCCSSCEEE
T ss_pred CCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCc----------cceEecCCCccEEE
Confidence 89999999998888888889999999999999987 89999999999999987653 45556678999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc----------
Q 005254 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS---------- 569 (706)
Q Consensus 500 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------- 569 (706)
++|+|++ ++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 295 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 373 (425)
T 1r5m_A 295 ASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNR 373 (425)
T ss_dssp EEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------
T ss_pred EEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999888
Q ss_pred ----------eEEEEeeccc--CEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 570 ----------CLKTFEGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 570 ----------~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
++..+..|.. .|++++|+|++++|++++.||.|++||++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 374 DGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -----CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8899999976 99999999999999999999999999985
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.9e-45 Score=357.50 Aligned_cols=288 Identities=26% Similarity=0.448 Sum_probs=271.8
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEE
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~ 426 (706)
..+.+|..+|.+++|.| ++.++++++.|+.|++||+.+++....+.+|...|.++. +.++++. +++|+.|++|++|
T Consensus 102 ~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~--~~~~~~~-l~sgs~D~~i~iw 177 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS--FDHSGKL-LASCSADMTIKLW 177 (410)
T ss_dssp CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEE--ECTTSSE-EEEEETTSCCCEE
T ss_pred EeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEE--EcCCCCE-EEEEeCCCeEEEE
Confidence 34568999999999988 678999999999999999999999999999999999998 8888876 9999999999999
Q ss_pred eCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 427 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 427 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
|+.+++.+..+.+|...|.+++|+|++. ++++++.|+.|++||+..+. ....+.+|...|.++.++|++
T Consensus 178 d~~~~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~----------~~~~~~~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 178 DFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGY----------CVKTFTGHREWVRMVRPNQDG 246 (410)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCC----------EEEEEECCSSCEEEEEECTTS
T ss_pred eCCCCceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCc----------EEEEEeCCCccEEEEEECCCC
Confidence 9999999999999999999999999987 89999999999999998653 566778899999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccC--------------------CCEEEEecCCCcEEEEEcC
Q 005254 507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV--------------------DQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 507 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~dg~i~iwd~~ 566 (706)
.++++++.|+.|++||+.+++....+.+|...|.+++|+|+ +.+|++|+.|+.|++||+.
T Consensus 247 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 247 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 99999999999999999999999999999999999999996 6789999999999999999
Q ss_pred CCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 005254 567 DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 646 (706)
Q Consensus 567 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 646 (706)
+++++..+.+|...|++++|+|+|++|++++.||.|++||+.+++++..+.+|...|++++|+|++++|++|+.||.|++
T Consensus 327 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v 406 (410)
T 1vyh_C 327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406 (410)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEC
Q 005254 647 WHD 649 (706)
Q Consensus 647 w~~ 649 (706)
|++
T Consensus 407 W~~ 409 (410)
T 1vyh_C 407 WEC 409 (410)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 20
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.2e-45 Score=350.14 Aligned_cols=321 Identities=18% Similarity=0.195 Sum_probs=237.1
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec------cCeEEEEECCCCeEEE-
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH------SREIRVWDLSTLKCLR- 96 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~- 96 (706)
.+.+.+++.++..........|+++... ..+|...|++++|||||++||+++. |+.|++|+..++....
T Consensus 10 g~d~g~~~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~ 85 (357)
T 4g56_B 10 GVDLGTENLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES 85 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG
T ss_pred CCCCCccceEEecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee
Confidence 4666777777666666688999986443 3579999999999999999999997 7889999998776433
Q ss_pred ---EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE----EeeCCCCcEEEEEEcCCCCceEEEEEecCCe
Q 005254 97 ---SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH----YFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (706)
Q Consensus 97 ---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 169 (706)
...+|...|.+++|+|+++++ +++.|++|++||+.+++... ...+|...|.+++|+|+++. |++|+.|+.
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~--l~sgs~dg~ 162 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ--AVSGGKDFS 162 (357)
T ss_dssp GCSEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSE--EEEEETTSC
T ss_pred EecccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCE--EEEEeCCCe
Confidence 345688999999999998655 56779999999998876543 34479999999999999876 999999999
Q ss_pred EEEEECCCCeeEEEeecccceEEEEEEecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccc
Q 005254 170 VRVWDLLAKKCVATLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFL 248 (706)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (706)
|++||+++++.+..+.+|...|.+++|++++. ++++++.||.|++||+++++....+.
T Consensus 163 v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~--------------------- 221 (357)
T 4g56_B 163 VKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID--------------------- 221 (357)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---------------------
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---------------------
Confidence 99999999999999999999999999999875 78899999999999987654332211
Q ss_pred ccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCce
Q 005254 249 SSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQL 328 (706)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 328 (706)
T Consensus 222 -------------------------------------------------------------------------------- 221 (357)
T 4g56_B 222 -------------------------------------------------------------------------------- 221 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeec
Q 005254 329 LLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS 408 (706)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 408 (706)
...+...+.++. ++|
T Consensus 222 ---------------------------------------------------------------~~~~~~~v~~v~--~sp 236 (357)
T 4g56_B 222 ---------------------------------------------------------------FCASDTIPTSVT--WHP 236 (357)
T ss_dssp ---------------------------------------------------------------CTTCCSCEEEEE--ECT
T ss_pred ---------------------------------------------------------------eccccccccchh--hhh
Confidence 112333455555 777
Q ss_pred CCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeE
Q 005254 409 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488 (706)
Q Consensus 409 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 488 (706)
++..++++|+.|+.|++||+.+++.+..+..|...|++++|+|++..+|++++.|++|++||++.+ ...
T Consensus 237 ~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-----------~~~ 305 (357)
T 4g56_B 237 EKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS-----------EVF 305 (357)
T ss_dssp TSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC-----------EEE
T ss_pred cccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC-----------cEe
Confidence 777669999999999999999999999999999999999999998778999999999999998765 333
Q ss_pred EEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccE
Q 005254 489 VVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 489 ~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~ 528 (706)
...+|...|++++|+| ++.+|++++.||+|++|++.+...
T Consensus 306 ~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 306 RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 4457999999999998 899999999999999999976543
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.7e-43 Score=333.26 Aligned_cols=295 Identities=22% Similarity=0.347 Sum_probs=257.6
Q ss_pred eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
+..+++.+|.+.|++++|+|++++|++++.||.|++||+++++.+..+..|..+|.+++|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC-eeEEEeecccceEEEEEEec-CCCEEEEEeC
Q 005254 131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-KCVATLDKHFSRVTSMAITS-DGSTLISAGR 208 (706)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 208 (706)
+.+++.+..+.+|...|.+++|+|+++. +++|+.|++|++||++++ .....+.+|...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPY--VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSE--EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCE--EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 9999999999999999999999998876 999999999999999887 55677889999999999999 6789999999
Q ss_pred CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 209 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
|+.|++||+.+......+.
T Consensus 162 D~~v~iwd~~~~~~~~~~~------------------------------------------------------------- 180 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLT------------------------------------------------------------- 180 (304)
T ss_dssp TSEEEEEETTCSSCSEEEE-------------------------------------------------------------
T ss_pred CCeEEEEECCCCCccceec-------------------------------------------------------------
Confidence 9999999987644322211
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeC-CCCc
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG-EEEQ 367 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 367 (706)
.++...+..+.+.+ +++.
T Consensus 181 -------------------------------------------------------------~~~~~~v~~~~~~~~~~~~ 199 (304)
T 2ynn_A 181 -------------------------------------------------------------TGQERGVNYVDYYPLPDKP 199 (304)
T ss_dssp -------------------------------------------------------------CCCTTCEEEEEECCSTTCC
T ss_pred -------------------------------------------------------------cCCcCcEEEEEEEEcCCCC
Confidence 01223344455544 3667
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
++++++.|+.|++||+.++++...+.+|...+.++. +.|++.. |++++.||.|++||..+++.+..+..|...+.++
T Consensus 200 ~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~--~~p~~~~-l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~ 276 (304)
T 2ynn_A 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV--FHPTLPI-IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276 (304)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--ECSSSSE-EEEEETTSCEEEEETTTCCEEEEECCSSSSEEEE
T ss_pred EEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE--ECCCCCE-EEEEcCCCeEEEEECCCCceeeeccCCCccEEEE
Confidence 999999999999999999999999999999999998 8888876 9999999999999999999999999999999999
Q ss_pred EEecCCCeE-EEEecCCCeEEEEEecC
Q 005254 448 AFSKKLQNF-LVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 448 ~~~~~~~~~-l~~~~~d~~i~i~~~~~ 473 (706)
+++|++... +++++.| .+.+|++..
T Consensus 277 ~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 277 ATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp EECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred EECCCCCceEEEEecCC-ceEEEEecc
Confidence 999988654 6666554 577777653
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.7e-43 Score=336.89 Aligned_cols=289 Identities=21% Similarity=0.355 Sum_probs=265.8
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
.....+.+|...|.+++|.+ +++++++++.|+.|++||..++.....+..|...+.++. +.|+++. +++++.|+.+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~-l~s~~~d~~v 121 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA--YAPSGNY-VACGGLDNIC 121 (340)
T ss_dssp CEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEE--ECTTSSE-EEEEETTCEE
T ss_pred hhheeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEE--ECCCCCE-EEEEeCCCeE
Confidence 34567789999999999987 788999999999999999999999999999999999998 8888887 9999999999
Q ss_pred EEEeCCCc----eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEE
Q 005254 424 RLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (706)
Q Consensus 424 ~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (706)
++|++.++ .....+.+|.+.|.++.|++++. +++++.|+.|++||+..+. ....+.+|...|.+
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~----------~~~~~~~h~~~v~~ 189 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQ----------QTTTFTGHTGDVMS 189 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTE----------EEEEECCCSSCEEE
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCc----------EEEEEcCCCCceEE
Confidence 99999875 45667889999999999999864 8999999999999997653 55667789999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeec--
Q 005254 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-- 577 (706)
Q Consensus 500 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-- 577 (706)
++|+|+++++++|+.||.|++||+.++.....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~ 269 (340)
T 1got_B 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888777532
Q ss_pred ccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 578 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 578 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
...|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++|+
T Consensus 270 ~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999996
No 23
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.7e-43 Score=339.08 Aligned_cols=290 Identities=22% Similarity=0.343 Sum_probs=251.0
Q ss_pred eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
+....+.+|...|++++|+|++++||+|+.||.|++||..+++....+..|...|.+++|+|++.+|++++.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEec--CCCE
Q 005254 131 VDGG------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS--DGST 202 (706)
Q Consensus 131 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 202 (706)
+... .....+.+|...|.+++|+|++.. +++++.|++|++||+++++.+..+.+|...|.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ--ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCE--EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8643 234566789999999999998876 99999999999999999999999988988888888876 3456
Q ss_pred EEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECC
Q 005254 203 LISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNAD 282 (706)
Q Consensus 203 l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 282 (706)
|++++.||.|++||++
T Consensus 213 l~sgs~Dg~v~~wd~~---------------------------------------------------------------- 228 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMR---------------------------------------------------------------- 228 (354)
T ss_dssp EEEEETTSCEEEEETT----------------------------------------------------------------
T ss_pred EEEEeCCCeEEEEECC----------------------------------------------------------------
Confidence 6666666666666553
Q ss_pred CCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEe
Q 005254 283 SACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL 362 (706)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 362 (706)
T Consensus 229 -------------------------------------------------------------------------------- 228 (354)
T 2pbi_B 229 -------------------------------------------------------------------------------- 228 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCc
Q 005254 363 GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG 442 (706)
Q Consensus 363 ~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 442 (706)
+++.+..+..|..
T Consensus 229 -------------------------------------------------------------------~~~~~~~~~~h~~ 241 (354)
T 2pbi_B 229 -------------------------------------------------------------------SGQCVQAFETHES 241 (354)
T ss_dssp -------------------------------------------------------------------TCCEEEEECCCSS
T ss_pred -------------------------------------------------------------------CCcEEEEecCCCC
Confidence 3333334456778
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee--cCcceEEEEEcCCCCEEEEeeCCCcEEE
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA--HGKDINSLAVAPNDSLVCTGSQDRTACV 520 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i 520 (706)
.|.+++|+|++. ++++++.|++|++||+.... ....... +...+.+++|+|++++|++|+.|+.|++
T Consensus 242 ~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~----------~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~v 310 (354)
T 2pbi_B 242 DVNSVRYYPSGD-AFASGSDDATCRLYDLRADR----------EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV 310 (354)
T ss_dssp CEEEEEECTTSS-EEEEEETTSCEEEEETTTTE----------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCc----------EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEE
Confidence 899999999987 89999999999999997642 2222222 2346899999999999999999999999
Q ss_pred EeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
||+.+++.+..+.+|...|++++|+|++++|++++.|++|++|+
T Consensus 311 wd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 311 WDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999999999999999999999996
No 24
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7e-43 Score=331.37 Aligned_cols=297 Identities=24% Similarity=0.383 Sum_probs=251.5
Q ss_pred eEEEeecCCCccEEEEEEccCC-CEEEEEeccCeEEEEECCC-----CeEEEEeeccCCCeEEEEECCCCCEEEEecCCC
Q 005254 51 SIKSTIEGGSDTITALALSPDD-KLLFSSGHSREIRVWDLST-----LKCLRSWKGHDGPAIGMACHPSGGLLATAGADR 124 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~~~-~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 124 (706)
.+...|.+|.+.|++++|+|++ ++|++|+.|++|++||+.+ +.++..+.+|...|.+++|+|++++|++++.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 3557899999999999999965 8999999999999999864 456788999999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEE
Q 005254 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLI 204 (706)
Q Consensus 125 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 204 (706)
+|++||+.+++.+..+.+|...|.+++|+|++.. +++|+.|+.|++||++ ++.+..+.+|...|.+++|+|.+..
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~-- 162 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA-- 162 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCE--EEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC-----
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCE--EEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC--
Confidence 9999999999999999999999999999998776 9999999999999985 5666777788888888887765320
Q ss_pred EEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 205 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
T Consensus 163 -------------------------------------------------------------------------------- 162 (319)
T 3frx_A 163 -------------------------------------------------------------------------------- 162 (319)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC
Q 005254 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 364 (706)
T Consensus 163 -------------------------------------------------------------------------------- 162 (319)
T 3frx_A 163 -------------------------------------------------------------------------------- 162 (319)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 444 (706)
.+++. .+++++.|+.|++||+.+.+....+.+|...|
T Consensus 163 ------------------------------------------~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v 199 (319)
T 3frx_A 163 ------------------------------------------DDDSV-TIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199 (319)
T ss_dssp ---------------------------------------------CC-EEEEEETTSCEEEEETTTTEEEEEECCCCSCE
T ss_pred ------------------------------------------CCCcc-EEEEEeCCCEEEEEECCcchhheeecCCCCcE
Confidence 00111 26777777788888887777777788899999
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
.+++|+|+++ +|++++.||.|++||+.... ....+. +...|.+++|+|++.++++++.+ .+++|++.
T Consensus 200 ~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~----------~~~~~~-~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~ 266 (319)
T 3frx_A 200 NTLTASPDGT-LIASAGKDGEIMLWNLAAKK----------AMYTLS-AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLD 266 (319)
T ss_dssp EEEEECTTSS-EEEEEETTCEEEEEETTTTE----------EEEEEE-CCSCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred EEEEEcCCCC-EEEEEeCCCeEEEEECCCCc----------EEEEec-CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence 9999999988 89999999999999997652 233333 45689999999999999988765 59999999
Q ss_pred CccEEEEEee--------cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 525 DLVSVVTFRG--------HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 525 ~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
.......+.. |...+.+++|+|+|++|++|+.||.|++||+.++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 8877776653 4567999999999999999999999999998754
No 25
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-42 Score=327.85 Aligned_cols=293 Identities=24% Similarity=0.370 Sum_probs=263.4
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
....+.+|...|.+++|+| ++.++++++.||.|++||+.++.....+..|..++.++. +.++++. +++|+.|+.|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~s~s~d~~i~ 80 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK--FIARKNW-IIVGSDDFRIR 80 (304)
T ss_dssp CEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--EEGGGTE-EEEEETTSEEE
T ss_pred eEEeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEE--EeCCCCE-EEEECCCCEEE
Confidence 3456778999999999998 778999999999999999999999999999999999998 8888887 99999999999
Q ss_pred EEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 425 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
+||+.+++.+..+.+|...|.+++|+|+++ ++++++.|++|++||+.... .....+.+|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~---------~~~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNW---------ALEQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTT---------EEEEEECCCCSCEEEEEECT
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCc---------chhhhhcccCCcEEEEEECC
Confidence 999999999999999999999999999987 89999999999999997542 14456778999999999999
Q ss_pred -CCCEEEEeeCCCcEEEEeCCCccEEEEEe-ecCCcEEEEEEcc--CCCEEEEecCCCcEEEEEcCCCceEEEEeecccC
Q 005254 505 -NDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSP--VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS 580 (706)
Q Consensus 505 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 580 (706)
++.+|++|+.|+.|++||+.+......+. +|...+..+.|+| ++.+|++++.|++|++||+.+++++..+.+|...
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~ 230 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCC
Confidence 67899999999999999998877665554 4668899999987 7789999999999999999999999999999999
Q ss_pred EEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCC--EEEEEeCCCcEEEEECCch
Q 005254 581 VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE--MFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 581 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~ 652 (706)
|.+++|+|++++|++++.||.|++||+.+++++..+..|...+.+++|+|++. ++++|+.|| +.+|++...
T Consensus 231 v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence 99999999999999999999999999999999999999999999999999885 577776555 788887653
No 26
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3e-44 Score=350.09 Aligned_cols=316 Identities=22% Similarity=0.383 Sum_probs=269.3
Q ss_pred CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEE
Q 005254 124 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL 203 (706)
Q Consensus 124 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 203 (706)
..+..|+..+..+...+.+|.+.|.+++|+|+++. |++|+.||+|++||+.+++....+..|...|.+++|+|+|++|
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~--l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNW--IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSC--EEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEE
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCCE--EEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEE
Confidence 44566888888889999999999999999999877 9999999999999999999999999999999999999999999
Q ss_pred EEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCC
Q 005254 204 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (706)
Q Consensus 204 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 283 (706)
++++.|+.+++|++.+..... +
T Consensus 124 as~~~d~~v~iw~~~~~~~~~----------------~------------------------------------------ 145 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRD----------------G------------------------------------------ 145 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCC----------------C------------------------------------------
T ss_pred EEeeCCCcEEEEECCCCcccc----------------C------------------------------------------
Confidence 999999999999986432100 0
Q ss_pred CeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeC
Q 005254 284 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 363 (706)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 363 (706)
T Consensus 146 -------------------------------------------------------------------------------- 145 (380)
T 3iz6_a 146 -------------------------------------------------------------------------------- 145 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE-----e
Q 005254 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-----T 438 (706)
Q Consensus 364 ~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~ 438 (706)
.......+.+|.+.+.++. +.|++...+++|+.|++|++||+.+++.+..+ .
T Consensus 146 ---------------------~~~~~~~~~gh~~~v~~~~--~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~ 202 (380)
T 3iz6_a 146 ---------------------NMPVSRVLTGHKGYASSCQ--YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS 202 (380)
T ss_dssp ---------------------SSTTCCBCCCCSSCCCCCB--CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSS
T ss_pred ---------------------CccceeeccCCCcceEEEE--EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCC
Confidence 0000113445666666655 66665555899999999999999999888776 5
Q ss_pred CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcE
Q 005254 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTA 518 (706)
Q Consensus 439 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 518 (706)
+|...|.++++++....++++++.|+.|++||++... .....+.+|...|.+++|+|++++|++++.||+|
T Consensus 203 ~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~---------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i 273 (380)
T 3iz6_a 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS---------RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273 (380)
T ss_dssp SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC---------CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCE
T ss_pred CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC---------cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeE
Confidence 7889999999988555599999999999999987432 1456678899999999999999999999999999
Q ss_pred EEEeCCCccEEEEEeecCC-------cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEE----eecccCEEEEEEE
Q 005254 519 CVWRLPDLVSVVTFRGHKR-------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF----EGHTSSVLRASFL 587 (706)
Q Consensus 519 ~i~d~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~i~~~~~s 587 (706)
++||+.+++.+..+..+.. .|++++|+|++++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+
T Consensus 274 ~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s 353 (380)
T 3iz6_a 274 RLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS 353 (380)
T ss_dssp EEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC
T ss_pred EEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC
Confidence 9999999998888765432 4899999999999999999999999999999988877 6799999999999
Q ss_pred eCCCEEEEEeCCCCEEEEECCCCe
Q 005254 588 TRGAQIVSCGADGLVKLWTVRTGE 611 (706)
Q Consensus 588 ~~~~~l~~~~~dg~i~iwd~~~~~ 611 (706)
|+|++|++|+.||.|++|++...+
T Consensus 354 ~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 354 SDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999999999999999987654
No 27
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.5e-44 Score=343.51 Aligned_cols=249 Identities=18% Similarity=0.222 Sum_probs=204.3
Q ss_pred CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEE----EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEE
Q 005254 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG----VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 469 (706)
+|...|.+++ +.|++. +++++.||.|++||+.+++... ...+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 92 ~~~~~V~~~~--~s~d~~--~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iw 166 (357)
T 4g56_B 92 QTEAGVTDVA--WVSEKG--ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVW 166 (357)
T ss_dssp ECSSCEEEEE--EETTTE--EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEE
T ss_pred CCCCCEEEEE--EcCCCC--EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEE
Confidence 4556677776 667653 5567889999999988876443 3447899999999999987 89999999999999
Q ss_pred EecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCC-EEEEeeCCCcEEEEeCCCccEEEEEe--ecCCcEEEEEEcc
Q 005254 470 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSP 546 (706)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~s~ 546 (706)
|+.... ....+..|...|.+++|+|++. ++++++.||.|++||+++++....+. .|...+.+++|+|
T Consensus 167 d~~~~~----------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp 236 (357)
T 4g56_B 167 DLSQKA----------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP 236 (357)
T ss_dssp ETTTTE----------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECT
T ss_pred ECCCCc----------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhh
Confidence 988653 5667788999999999999875 78999999999999999987766544 4677899999999
Q ss_pred C-CCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCC-CEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEE
Q 005254 547 V-DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW 624 (706)
Q Consensus 547 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 624 (706)
+ +.+|++|+.|+.|++||+.+++++..+.+|...|++++|+|++ ++|++++.|++|+|||+.+++++..+ +|.+.|+
T Consensus 237 ~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~ 315 (357)
T 4g56_B 237 EKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVT 315 (357)
T ss_dssp TSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEE
T ss_pred cccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEE
Confidence 7 5689999999999999999999999999999999999999987 57999999999999999999987665 8999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCchhHHHHH
Q 005254 625 ALAVGK-KTEMFATGGSDALVNLWHDSTAAEREEA 658 (706)
Q Consensus 625 ~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 658 (706)
+++|+| |+++|++++.||.|++|++.+.......
T Consensus 316 ~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~ 350 (357)
T 4g56_B 316 GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENL 350 (357)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEECC--------
T ss_pred EEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccc
Confidence 999998 7999999999999999999876554433
No 28
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.9e-44 Score=348.59 Aligned_cols=309 Identities=26% Similarity=0.397 Sum_probs=263.6
Q ss_pred CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEE
Q 005254 39 GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLA 118 (706)
Q Consensus 39 ~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 118 (706)
+..+..|+..+....+.+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++....+..|...|.+++|+|++++|+
T Consensus 45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA 124 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEE
T ss_pred cccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEE
Confidence 34566788888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcEEEEECCCCe-------EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe-----ec
Q 005254 119 TAGADRKVLVWDVDGGF-------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-----DK 186 (706)
Q Consensus 119 ~~~~d~~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~ 186 (706)
+|+.|+.+++||+.+.. ....+.+|.+.|.+++|+|++. ..+++|+.|++|++||+.+++.+..+ .+
T Consensus 125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence 99999999999997532 3455778999999999999743 24899999999999999999988877 67
Q ss_pred ccceEEEEEEec-CCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccce
Q 005254 187 HFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI 265 (706)
Q Consensus 187 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (706)
|...|.+++|++ ++.++++++.|+.|++||++...
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-------------------------------------------- 239 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-------------------------------------------- 239 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC--------------------------------------------
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC--------------------------------------------
Confidence 889999999977 78899999999999999975311
Q ss_pred EEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEE
Q 005254 266 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL 345 (706)
Q Consensus 266 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (706)
T Consensus 240 -------------------------------------------------------------------------------- 239 (380)
T 3iz6_a 240 -------------------------------------------------------------------------------- 239 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEE
Q 005254 346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (706)
Q Consensus 346 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (706)
.....+.+|...|.++. ++|++.. +++++.|++|++
T Consensus 240 -----------------------------------------~~~~~~~~h~~~v~~v~--~~p~~~~-l~s~s~D~~i~l 275 (380)
T 3iz6_a 240 -----------------------------------------RAVRTYHGHEGDINSVK--FFPDGQR-FGTGSDDGTCRL 275 (380)
T ss_dssp -----------------------------------------CCCEEECCCSSCCCEEE--ECTTSSE-EEEECSSSCEEE
T ss_pred -----------------------------------------cceEEECCcCCCeEEEE--EecCCCe-EEEEcCCCeEEE
Confidence 01113455677777777 7787777 899999999999
Q ss_pred EeCCCceEEEEEeCCC-------cCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE----eecC
Q 005254 426 WDSESRCCVGVGTGHM-------GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV----AAHG 494 (706)
Q Consensus 426 ~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~----~~~~ 494 (706)
||+.+++.+..+..+. ..+++++|+|+++ ++++|+.||.|++||+.... ....+ .+|.
T Consensus 276 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~----------~~~~~~~~~~~h~ 344 (380)
T 3iz6_a 276 FDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAE----------MVLNLGTLQNSHE 344 (380)
T ss_dssp EETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCC----------EEEEECCSCSSCC
T ss_pred EECCCCcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCc----------eEEEEecccCCCC
Confidence 9999998888775443 3489999999988 89999999999999987543 22222 5688
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc
Q 005254 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 527 (706)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 527 (706)
..|++++|+|+|++|++|+.||.|++|++...+
T Consensus 345 ~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 345 GRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999999999999999999999999987653
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.6e-43 Score=335.59 Aligned_cols=301 Identities=19% Similarity=0.189 Sum_probs=244.4
Q ss_pred EEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC-----------CeEEEEeeccCCCeEEEEE
Q 005254 42 INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST-----------LKCLRSWKGHDGPAIGMAC 110 (706)
Q Consensus 42 i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~-----------~~~~~~~~~~~~~v~~~~~ 110 (706)
.+.|++..... ..|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|
T Consensus 16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 90 (344)
T 4gqb_B 16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW 90 (344)
T ss_dssp -------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred ccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence 35566654332 35778899999999999999887 66777776321 1111122336688999999
Q ss_pred CCCCCEEEEecCCCcEEEEECCCCeEEEE----eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec
Q 005254 111 HPSGGLLATAGADRKVLVWDVDGGFCTHY----FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK 186 (706)
Q Consensus 111 s~~~~~l~~~~~d~~i~vw~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 186 (706)
+|++ +|++++.||+|++||+++++.+.. ..+|...|.+++|+|+++. |++|+.|++|++||+++++.+..+.+
T Consensus 91 s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~--l~sgs~d~~i~iwd~~~~~~~~~~~~ 167 (344)
T 4gqb_B 91 VGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ--AVSGSKDICIKVWDLAQQVVLSSYRA 167 (344)
T ss_dssp ETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSE--EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred eCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCE--EEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 9985 688999999999999998875433 4589999999999999886 99999999999999999999999999
Q ss_pred ccceEEEEEEecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccce
Q 005254 187 HFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI 265 (706)
Q Consensus 187 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (706)
|.+.|.+++|++++. +|++++.|+.|++||+++++....+..
T Consensus 168 h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------------------------- 210 (344)
T 4gqb_B 168 HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC------------------------------------- 210 (344)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------------------------------------
T ss_pred cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec-------------------------------------
Confidence 999999999999885 788999999999999987765443211
Q ss_pred EEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEE
Q 005254 266 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL 345 (706)
Q Consensus 266 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (706)
T Consensus 211 -------------------------------------------------------------------------------- 210 (344)
T 4gqb_B 211 -------------------------------------------------------------------------------- 210 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEE
Q 005254 346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (706)
Q Consensus 346 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (706)
..+...+.+++|.|.++.++++++.++.|++||+.+++.+..+.+|...|.++. ++|++..+|++|+.|++|++
T Consensus 211 ----~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~--fsp~g~~~lasgs~D~~i~v 284 (344)
T 4gqb_B 211 ----SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLV--FSPHSVPFLASLSEDCSLAV 284 (344)
T ss_dssp -------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEE--ECSSSSCCEEEEETTSCEEE
T ss_pred ----ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEE--EccCCCeEEEEEeCCCeEEE
Confidence 012234567788888889999999999999999999999999999999999998 88988777999999999999
Q ss_pred EeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 426 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 426 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
||..+++.+ .+.+|.+.|++++|+|+++.+|++++.|++|++|++...
T Consensus 285 wd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 285 LDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 999998765 468899999999999999878899999999999999764
No 30
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.8e-44 Score=354.20 Aligned_cols=346 Identities=15% Similarity=0.175 Sum_probs=286.1
Q ss_pred cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee
Q 005254 62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK 141 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 141 (706)
.+++++|+|++++|++++.|+.|++||+.+++....+..| ..+....|+|++++|++++.|+.|++||+.+++....+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 4558999999999999999999999999998887777766 555666889999999999999999999999999998888
Q ss_pred CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCc
Q 005254 142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS 221 (706)
Q Consensus 142 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 221 (706)
+|...|.+++|+|+++. +++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 137 ~h~~~v~~~~~~~~~~~--l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEA--LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp SSSSCEEEEEECTTSSE--EEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred cccCccEEEEECCCCCE--EEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 99999999999998775 9999999999999999999999999999999999999999999999999999999987654
Q ss_pred ceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccC
Q 005254 222 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMD 301 (706)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (706)
....+...
T Consensus 215 ~~~~~~~~------------------------------------------------------------------------ 222 (420)
T 3vl1_A 215 TIHTFNRK------------------------------------------------------------------------ 222 (420)
T ss_dssp EEEEECBT------------------------------------------------------------------------
T ss_pred eeEEeecC------------------------------------------------------------------------
Confidence 33221100
Q ss_pred CCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEE
Q 005254 302 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 381 (706)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~ 381 (706)
T Consensus 223 -------------------------------------------------------------------------------- 222 (420)
T 3vl1_A 223 -------------------------------------------------------------------------------- 222 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec
Q 005254 382 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 382 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 461 (706)
..+...+.++++.+.+...
T Consensus 223 --------------------------------------------------------~~~~~~v~~~~~~~~~~~~----- 241 (420)
T 3vl1_A 223 --------------------------------------------------------ENPHDGVNSIALFVGTDRQ----- 241 (420)
T ss_dssp --------------------------------------------------------TBTTCCEEEEEEEECCCSS-----
T ss_pred --------------------------------------------------------CCCCCCccEEEEecCCcce-----
Confidence 0112223333333332210
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee-cCCcEE
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIW 540 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~ 540 (706)
....+...+.+++|+|++++|++++.||.|++||+.+++....+.. |...|.
T Consensus 242 ---------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 294 (420)
T 3vl1_A 242 ---------------------------LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCN 294 (420)
T ss_dssp ---------------------------CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEE
T ss_pred ---------------------------eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCce
Confidence 0011334577889999999999999999999999999988777754 788999
Q ss_pred EEEEccCCC-EEEEecCCCcEEEEEcCCCce-EEEEee-cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe------
Q 005254 541 SVEFSPVDQ-VVITASGDKTIKIWSISDGSC-LKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE------ 611 (706)
Q Consensus 541 ~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------ 611 (706)
+++|+|+++ +|++++.||.|++||+.+++. +..+.. |...+.++ +.+++++|++++.||.|++||+.+.+
T Consensus 295 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~ 373 (420)
T 3vl1_A 295 SLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAI 373 (420)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEE
T ss_pred eEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccce
Confidence 999999999 999999999999999998754 777777 56677777 55688899999999999999987631
Q ss_pred ---EEEEeccCCCcEEEEEEcCCCC---EEEEEeCCCcEEEEECCc
Q 005254 612 ---CIATYDKHEDKIWALAVGKKTE---MFATGGSDALVNLWHDST 651 (706)
Q Consensus 612 ---~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~vw~~~~ 651 (706)
....+..|.+.|.+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 374 EFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred eccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 2234557889999999999999 788888999999999875
No 31
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-42 Score=332.87 Aligned_cols=327 Identities=24% Similarity=0.366 Sum_probs=242.4
Q ss_pred CeEEEeecCCCc-cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEE---EeeccCCCeEEEEECCCCCEEEEecCCCc
Q 005254 50 ASIKSTIEGGSD-TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR---SWKGHDGPAIGMACHPSGGLLATAGADRK 125 (706)
Q Consensus 50 ~~~~~~l~~~~~-~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 125 (706)
.+.+..+.+|.. .|.+++|+|+|++||+|+.|+.|+|||++++.... ...+|...|.+++|+|++++|++++.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 356788999988 99999999999999999999999999999886432 23679999999999999999999999999
Q ss_pred EEEEECCCC--eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe---eEEEeecccceEEEEEEecCC
Q 005254 126 VLVWDVDGG--FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---CVATLDKHFSRVTSMAITSDG 200 (706)
Q Consensus 126 i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~ 200 (706)
|++|++..+ +.+..+.+|...|.+++|+|+++. |++++.|+.|++||+.++. .+..+.+|...|.+++|+|++
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~--l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL--LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSE--EEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCE--EEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence 999999876 457788999999999999998876 9999999999999998763 456778899999999999999
Q ss_pred CEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEE
Q 005254 201 STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 280 (706)
Q Consensus 201 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 280 (706)
++|++++.|+.|++|+..+.+..
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~--------------------------------------------------------- 185 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWV--------------------------------------------------------- 185 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEE---------------------------------------------------------
T ss_pred CEEEEEeCCCcEEEEEecCCCEE---------------------------------------------------------
Confidence 99999999999999986543211
Q ss_pred CCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEee
Q 005254 281 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK 360 (706)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 360 (706)
....+.+|...|.+++
T Consensus 186 ----------------------------------------------------------------~~~~~~~h~~~v~~l~ 201 (345)
T 3fm0_A 186 ----------------------------------------------------------------CCATLEGHESTVWSLA 201 (345)
T ss_dssp ----------------------------------------------------------------EEEEECCCSSCEEEEE
T ss_pred ----------------------------------------------------------------EEEEecCCCCceEEEE
Confidence 0012233445555666
Q ss_pred EeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-
Q 005254 361 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG- 439 (706)
Q Consensus 361 ~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 439 (706)
|.| ++++|++++.|+.|++|+..... ....+. ....+ ...+++..+.+
T Consensus 202 ~sp-~g~~l~s~s~D~~v~iW~~~~~~-------~~~~~~---------------~~~~~--------~~~~~~~~~~~~ 250 (345)
T 3fm0_A 202 FDP-SGQRLASCSDDRTVRIWRQYLPG-------NEQGVA---------------CSGSD--------PSWKCICTLSGF 250 (345)
T ss_dssp ECT-TSSEEEEEETTSCEEEEEEECTT-------CTTCCC---------------CC-----------CEEEEEEEECSS
T ss_pred ECC-CCCEEEEEeCCCeEEEeccccCC-------CCccce---------------eeccC--------CccceeEEecCC
Confidence 654 45566666666666666532111 000000 00000 01123333443
Q ss_pred CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC-CEEEEeeCCCcE
Q 005254 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTA 518 (706)
Q Consensus 440 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i 518 (706)
|...|.+++|+|++. .+++++.|+.|++|+............. .......+|...|++++|+|++ .+|++|+.||.|
T Consensus 251 h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v 328 (345)
T 3fm0_A 251 HSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPNSDPQQPTFS-LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEV 328 (345)
T ss_dssp CSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTTSCTTSCCEE-EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred CCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCCCCcceeeEE-EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcE
Confidence 788999999999987 7999999999999998765322211100 1112235788999999999988 599999999999
Q ss_pred EEEeCCCccEEEEE
Q 005254 519 CVWRLPDLVSVVTF 532 (706)
Q Consensus 519 ~i~d~~~~~~~~~~ 532 (706)
++|++.+.+.....
T Consensus 329 ~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 329 AFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEEECC-------
T ss_pred EEEEecCCCCcccc
Confidence 99999888765543
No 32
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.1e-42 Score=326.12 Aligned_cols=293 Identities=24% Similarity=0.374 Sum_probs=264.2
Q ss_pred eEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC-----ceeeEeeeCCcceEEEeeeeeecCCCEEEEEe
Q 005254 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 417 (706)
Q Consensus 343 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 417 (706)
+.....+.+|.+.|.+++|.+.+++++++++.|+.|++|++.. +.....+.+|...+.++. +.+++.. ++++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~--~s~dg~~-l~s~ 83 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT--LTADGAY-ALSA 83 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEE--ECTTSSE-EEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEE--ECCCCCE-EEEE
Confidence 4455678899999999999998889999999999999999864 345667899999999998 8888887 9999
Q ss_pred eCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcce
Q 005254 418 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 497 (706)
Q Consensus 418 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 497 (706)
+.|++|++||+.+++.+..+.+|...|.+++|+|++. ++++++.|+.|++||++.. ....+.+|...+
T Consensus 84 s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~-----------~~~~~~~h~~~v 151 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQ-----------CLATLLGHNDWV 151 (319)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSC-----------EEEEECCCSSCE
T ss_pred eCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-----------eEEEEeccCCcE
Confidence 9999999999999999999999999999999999987 8999999999999998643 566778899999
Q ss_pred EEEEEcCC------CCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceE
Q 005254 498 NSLAVAPN------DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL 571 (706)
Q Consensus 498 ~~~~~s~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 571 (706)
.++.++|. +.++++++.|+.|++||+.+.+....+.+|...|.+++|+|++++|++++.||.|++||+.+++++
T Consensus 152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~ 231 (319)
T 3frx_A 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231 (319)
T ss_dssp EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999985 458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec--------cCCCcEEEEEEcCCCCEEEEEeCCCc
Q 005254 572 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD--------KHEDKIWALAVGKKTEMFATGGSDAL 643 (706)
Q Consensus 572 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~ 643 (706)
..+.. ...|.+++|+|++.+|++++.++ +++|++..+..+..+. .|...+.+++|+|||++|++++.||.
T Consensus 232 ~~~~~-~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~ 309 (319)
T 3frx_A 232 YTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309 (319)
T ss_dssp EEEEC-CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred EEecC-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCce
Confidence 88874 56899999999999999887655 9999999888777664 34567999999999999999999999
Q ss_pred EEEEECCch
Q 005254 644 VNLWHDSTA 652 (706)
Q Consensus 644 i~vw~~~~~ 652 (706)
|++|++.++
T Consensus 310 i~vWd~~t~ 318 (319)
T 3frx_A 310 IRVWQVMTA 318 (319)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEeec
Confidence 999998764
No 33
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.9e-42 Score=325.53 Aligned_cols=297 Identities=29% Similarity=0.490 Sum_probs=261.0
Q ss_pred CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEE
Q 005254 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129 (706)
Q Consensus 50 ~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 129 (706)
......+.+|...|++++|+|++++|++++.||.|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 130 DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 130 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
|+.+++.+..+.+|...|.+++|+|+++. +++++.||.|++||+++++.+..+..|..+|.+++|+|++++|++++.|
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSE--EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCE--EEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 99999999999999999999999998776 9999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEee
Q 005254 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 289 (706)
Q Consensus 210 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 289 (706)
|.|++||+++++....+..
T Consensus 171 ~~i~~wd~~~~~~~~~~~~------------------------------------------------------------- 189 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLID------------------------------------------------------------- 189 (312)
T ss_dssp SCEEEEETTTCCEEEEECC-------------------------------------------------------------
T ss_pred CcEEEEECCCCceeeEEec-------------------------------------------------------------
Confidence 9999999987654332210
Q ss_pred ccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEE
Q 005254 290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 369 (706)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 369 (706)
.+...+..++|.| +++++
T Consensus 190 -------------------------------------------------------------~~~~~~~~~~~~~-~~~~l 207 (312)
T 4ery_A 190 -------------------------------------------------------------DDNPPVSFVKFSP-NGKYI 207 (312)
T ss_dssp -------------------------------------------------------------SSCCCEEEEEECT-TSSEE
T ss_pred -------------------------------------------------------------cCCCceEEEEECC-CCCEE
Confidence 1122344555554 66788
Q ss_pred EEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEE
Q 005254 370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 449 (706)
Q Consensus 370 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 449 (706)
++++.++.|++||+.+++....+.+|.....++...+.+.+..++++|+.||.|++||+.+++.+..+.+|...|.+++|
T Consensus 208 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 287 (312)
T 4ery_A 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 287 (312)
T ss_dssp EEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEee
Confidence 88999999999999999988888888776555443355555555999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEec--CCCeEEEEEec
Q 005254 450 SKKLQNFLVSGS--SDHTIKVWSFD 472 (706)
Q Consensus 450 ~~~~~~~l~~~~--~d~~i~i~~~~ 472 (706)
+|+++ ++++++ .|+.|++|+.+
T Consensus 288 ~p~~~-~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 288 HPTEN-IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSS-EEEEEECTTTCCEEEEECC
T ss_pred cCcCC-ceEEEEccCCccEEEecCC
Confidence 99987 777775 69999999864
No 34
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.9e-43 Score=333.72 Aligned_cols=244 Identities=19% Similarity=0.207 Sum_probs=209.2
Q ss_pred CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE----EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV----GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 395 ~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
+...|.++. +.++ +. +++|+.||.|++||+.+++.+.. ..+|...|++++|+|+++ +|++++.|++|++||
T Consensus 81 ~~~~v~~~~--~s~d-~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 81 TEAGVADLT--WVGE-RG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWD 155 (344)
T ss_dssp ESSCEEEEE--EETT-TE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred cCCCEEEEE--EeCC-Ce-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEE
Confidence 344577776 6666 44 78999999999999998865443 458999999999999988 899999999999999
Q ss_pred ecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCC-EEEEeeCCCcEEEEeCCCccEEEEEe--ecCCcEEEEEEccC
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPV 547 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~s~~ 547 (706)
+..+. ....+.+|...|.+++|+|++. +|++++.|+.|++||+++++....+. .|...+.+++|+|+
T Consensus 156 ~~~~~----------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~ 225 (344)
T 4gqb_B 156 LAQQV----------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ 225 (344)
T ss_dssp TTTTE----------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS
T ss_pred CCCCc----------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC
Confidence 98653 6677888999999999999884 78999999999999999998888764 35667999999995
Q ss_pred -CCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCC-CEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEE
Q 005254 548 -DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 625 (706)
Q Consensus 548 -~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 625 (706)
+++|++|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++++.|++|++||+.+++++ .+.+|.+.|++
T Consensus 226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~ 304 (344)
T 4gqb_B 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRD 304 (344)
T ss_dssp CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEE
T ss_pred CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEE
Confidence 5788999999999999999999999999999999999999998 57999999999999999998865 56899999999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEECCchhH
Q 005254 626 LAVGKKTE-MFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 626 ~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~ 654 (706)
++|+|+++ +|++++.||+|++|++.++..
T Consensus 305 v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 305 ATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99999987 567899999999999987654
No 35
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-42 Score=331.72 Aligned_cols=253 Identities=21% Similarity=0.413 Sum_probs=213.2
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc--eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR--CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
.+|...|.+++ ++|+++. |++++.|+.+++|+...+ +.+..+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 58 ~~h~~~v~~~~--~sp~g~~-l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd 133 (345)
T 3fm0_A 58 EGHQRTVRKVA--WSPCGNY-LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWE 133 (345)
T ss_dssp SSCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred cccCCcEEEEE--ECCCCCE-EEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEE
Confidence 45777888887 7888877 999999999999998776 45677889999999999999987 899999999999999
Q ss_pred ecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc--EEEEEeecCCcEEEEEEccCC
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKRGIWSVEFSPVD 548 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~s~~~ 548 (706)
+.... .......+..|...|.+++|+|++++|++++.|+.|++||..+++ ....+.+|...|.+++|+|++
T Consensus 134 ~~~~~-------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g 206 (345)
T 3fm0_A 134 VDEED-------EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG 206 (345)
T ss_dssp ECTTS-------CEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTS
T ss_pred CCCCC-------CeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCC
Confidence 97642 122455677899999999999999999999999999999998775 456788999999999999999
Q ss_pred CEEEEecCCCcEEEEEcCCC---------------ceEEEEee-cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe-
Q 005254 549 QVVITASGDKTIKIWSISDG---------------SCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE- 611 (706)
Q Consensus 549 ~~l~~~~~dg~i~iwd~~~~---------------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~- 611 (706)
++|++++.|++|++||.... +++..+.+ |...|.+++|+|++..|++++.|+.|++|+...+.
T Consensus 207 ~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~ 286 (345)
T 3fm0_A 207 QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSD 286 (345)
T ss_dssp SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSC
T ss_pred CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCC
Confidence 99999999999999996322 33445555 88899999999999999999999999999987542
Q ss_pred --------EEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCchhHHH
Q 005254 612 --------CIATYDKHEDKIWALAVGKKTE-MFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 612 --------~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
......+|...|++++|+|++. +|++++.||.|++|++.+.+...
T Consensus 287 ~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 287 PQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp TTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred cceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 1223458999999999999984 99999999999999998877644
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.6e-42 Score=330.05 Aligned_cols=314 Identities=19% Similarity=0.325 Sum_probs=260.5
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEE---EEee
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL---RSWK 99 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~ 99 (706)
+++|+|||++++++... .+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.+++.. ..+.
T Consensus 14 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~ 92 (337)
T 1gxr_A 14 SFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD 92 (337)
T ss_dssp EEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE
T ss_pred EEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc
Confidence 69999999999988765 566666555544445557999999999999999999998 999999999877533 3333
Q ss_pred --ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe--EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 100 --GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF--CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 100 --~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|+|+++. +++++.||.|++||+
T Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~dg~v~~~d~ 170 (337)
T 1gxr_A 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV--CFSCCSDGNIAVWDL 170 (337)
T ss_dssp CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSE--EEEEETTSCEEEEET
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCE--EEEEeCCCcEEEEeC
Confidence 789999999999999999999999999999999887 66778889999999999998776 999999999999999
Q ss_pred CCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchh
Q 005254 176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255 (706)
Q Consensus 176 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (706)
++++.+..+..|...+.+++|+|++++|++++.||.|++||+++++.....
T Consensus 171 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----------------------------- 221 (337)
T 1gxr_A 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----------------------------- 221 (337)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------------------
T ss_pred CCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-----------------------------
Confidence 999999999999999999999999999999999999999997643211100
Q ss_pred hhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeee
Q 005254 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 335 (706)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 335 (706)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEE
Q 005254 336 VPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 415 (706)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 415 (706)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCc
Q 005254 416 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (706)
Q Consensus 416 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (706)
.+...+.+++|+|+++ ++++++.++.|++|++... .......|..
T Consensus 222 -----------------------~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~ 266 (337)
T 1gxr_A 222 -----------------------DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKP-----------DKYQLHLHES 266 (337)
T ss_dssp -----------------------ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSS-----------CEEEECCCSS
T ss_pred -----------------------cCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCC-----------CeEEEcCCcc
Confidence 0123345556666655 5666666666777766543 2234456778
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEc
Q 005254 496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (706)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 565 (706)
.+.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++
T Consensus 267 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 8999999999999999999999999999999887544 48899999999999999999999999999997
No 37
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=9.1e-42 Score=328.43 Aligned_cols=289 Identities=19% Similarity=0.311 Sum_probs=263.5
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
....+.+|...|.+++|.| ++.++++++.|+.|++||..+++....+..|...+.++. ++|++.. +++++.|+.++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~--~sp~g~~-lasg~~d~~i~ 131 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA--YAPSGCA-IACGGLDNKCS 131 (354)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEE--ECTTSSE-EEEESTTSEEE
T ss_pred EEEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEE--ECCCCCE-EEEeeCCCCEE
Confidence 4466789999999999987 678999999999999999999999889999999999988 8898887 99999999999
Q ss_pred EEeCCCc------eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 425 LWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 425 i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
+|++... .....+..|...|.+++|+|++. .+++++.|++|++||+..+. ....+.+|...|.
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~----------~~~~~~~h~~~v~ 200 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQ----------LLQSFHGHGADVL 200 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCC----------EEEEEECCSSCEE
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCe----------EEEEEcCCCCCeE
Confidence 9998643 34456678999999999999987 89999999999999998653 5667788999999
Q ss_pred EEEEcC--CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee
Q 005254 499 SLAVAP--NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 576 (706)
Q Consensus 499 ~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 576 (706)
+++++| ++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++.+..+..
T Consensus 201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~ 280 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK 280 (354)
T ss_dssp EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 999987 578999999999999999999999999999999999999999999999999999999999999888777764
Q ss_pred c--ccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 577 H--TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 577 ~--~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+ ...+.+++|+|++++|++++.|+.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.||.|++|+
T Consensus 281 ~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 3 34789999999999999999999999999999999999999999999999999999999999999999995
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.1e-42 Score=331.25 Aligned_cols=321 Identities=18% Similarity=0.254 Sum_probs=271.1
Q ss_pred CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE-
Q 005254 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT- 137 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~- 137 (706)
|..+|.+++|+|||++++++..++.+.+|+...........+|...|.+++|+|++++|++++ |+.|++||+.+++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456899999999999999988877777777666655555567999999999999999999999 999999999876532
Q ss_pred --EEee--CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe--eEEEeecccceEEEEEEecCCCEEEEEeCCCE
Q 005254 138 --HYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLISAGRDKV 211 (706)
Q Consensus 138 --~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 211 (706)
..+. +|...|.+++|+|+++. +++++.||.|++||+.+++ ....+..|...+.+++|+|+++++++++.||.
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGCT--LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSSE--EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeecccccCCCCcEEEEEEcCCCCE--EEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCc
Confidence 3333 79999999999998876 9999999999999998877 55667778888888888888888888888887
Q ss_pred EEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeecc
Q 005254 212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 291 (706)
Q Consensus 212 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 291 (706)
|++||++++
T Consensus 165 v~~~d~~~~----------------------------------------------------------------------- 173 (337)
T 1gxr_A 165 IAVWDLHNQ----------------------------------------------------------------------- 173 (337)
T ss_dssp EEEEETTTT-----------------------------------------------------------------------
T ss_pred EEEEeCCCC-----------------------------------------------------------------------
Confidence 777776432
Q ss_pred CccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEE
Q 005254 292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371 (706)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 371 (706)
T Consensus 174 -------------------------------------------------------------------------------- 173 (337)
T 1gxr_A 174 -------------------------------------------------------------------------------- 173 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEec
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 451 (706)
+.+..+..|...+.+++|+|
T Consensus 174 ------------------------------------------------------------~~~~~~~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 174 ------------------------------------------------------------TLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp ------------------------------------------------------------EEEEEECCCSSCEEEEEECT
T ss_pred ------------------------------------------------------------ceeeeeecccCceEEEEECC
Confidence 11222334667888899999
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEE
Q 005254 452 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 531 (706)
Q Consensus 452 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 531 (706)
+++ ++++++.|+.|++||+... .......+...+.+++|+|+++++++++.++.|++||+.+++. ..
T Consensus 194 ~~~-~l~~~~~dg~i~~~d~~~~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~ 260 (337)
T 1gxr_A 194 DGT-KLWTGGLDNTVRSWDLREG-----------RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQ 260 (337)
T ss_dssp TSS-EEEEEETTSEEEEEETTTT-----------EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EE
T ss_pred CCC-EEEEEecCCcEEEEECCCC-----------ceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EE
Confidence 887 8999999999999999865 2223345778899999999999999999999999999998765 46
Q ss_pred EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 532 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 532 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
+..|...|.+++|+|++++|++++.||.|++||+.+++.+... .|...+.+++|+|++++|++++.||.|++|++
T Consensus 261 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 7789999999999999999999999999999999999888554 48899999999999999999999999999996
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-41 Score=327.11 Aligned_cols=301 Identities=18% Similarity=0.347 Sum_probs=246.3
Q ss_pred eEEEeecCCCccEEEEEE-----cc-CCCEEEEEeccCeEEEEECCC-------CeEEEEeeccCCCeEEEEECCCCCEE
Q 005254 51 SIKSTIEGGSDTITALAL-----SP-DDKLLFSSGHSREIRVWDLST-------LKCLRSWKGHDGPAIGMACHPSGGLL 117 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~-----s~-~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l 117 (706)
+....+.+|...|++++| ++ ++++||+|+.|++|++||+.+ +.+...+.+|...|.+++|+|++.+|
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 456789999999999999 77 999999999999999999974 35677889999999999999999999
Q ss_pred EEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEee---cccceEEEE
Q 005254 118 ATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD---KHFSRVTSM 194 (706)
Q Consensus 118 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~ 194 (706)
++++.|++|++||+.+++.+..+.+|...|.+++|+|+++. +++++.|+.|++||+... ...... .|...|.++
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~--l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~ 168 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQ--ILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCV 168 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTE--EEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCE--EEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeee
Confidence 99999999999999999999999999999999999999876 999999999999998743 333332 577778888
Q ss_pred EEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCC
Q 005254 195 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 274 (706)
Q Consensus 195 ~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (706)
+|+|++... .
T Consensus 169 ~~~~~~~~~------~---------------------------------------------------------------- 178 (343)
T 2xzm_R 169 RYSPIMKSA------N---------------------------------------------------------------- 178 (343)
T ss_dssp EECCCCCSC------S----------------------------------------------------------------
T ss_pred eeccccccc------c----------------------------------------------------------------
Confidence 887764200 0
Q ss_pred eEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCc
Q 005254 275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354 (706)
Q Consensus 275 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (706)
T Consensus 179 -------------------------------------------------------------------------------- 178 (343)
T 2xzm_R 179 -------------------------------------------------------------------------------- 178 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEE
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 434 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 434 (706)
. ..+.+.. +++++.|+.|++|| .+.+..
T Consensus 179 ------------------------------------------------~--~~~~~~~-l~s~~~d~~i~iwd-~~~~~~ 206 (343)
T 2xzm_R 179 ------------------------------------------------K--VQPFAPY-FASVGWDGRLKVWN-TNFQIR 206 (343)
T ss_dssp ------------------------------------------------C--CCSSCCE-EEEEETTSEEEEEE-TTTEEE
T ss_pred ------------------------------------------------c--cCCCCCE-EEEEcCCCEEEEEc-CCCcee
Confidence 0 1122223 77888888888888 445666
Q ss_pred EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC
Q 005254 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514 (706)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 514 (706)
..+..|...|.+++|+|+++ +|++++.|+.|++||+..... ... ...+...|.+++|+|++.+++++ .
T Consensus 207 ~~~~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~~~~---------~~~-~~~~~~~v~~v~~sp~~~~la~~-~ 274 (343)
T 2xzm_R 207 YTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTY---------PQR-EFDAGSTINQIAFNPKLQWVAVG-T 274 (343)
T ss_dssp EEEECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESSCCSS---------CSE-EEECSSCEEEEEECSSSCEEEEE-E
T ss_pred EEEcCccccceEEEECCCCC-EEEEEcCCCeEEEEECCCCcc---------cce-eecCCCcEEEEEECCCCCEEEEE-C
Confidence 67788999999999999988 899999999999999854321 111 22345679999999999888765 5
Q ss_pred CCcEEEEeCCCccEEE--EEe-----------ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 515 DRTACVWRLPDLVSVV--TFR-----------GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 515 dg~i~i~d~~~~~~~~--~~~-----------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
|+.|++||+.+++... .+. +|...|.+++|+|++++|++|+.||.|++|+++++
T Consensus 275 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 275 DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 7789999998765433 333 67888999999999999999999999999998654
No 40
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-44 Score=355.56 Aligned_cols=337 Identities=14% Similarity=0.178 Sum_probs=279.8
Q ss_pred CCeEEEEECCCCC-EEEEe----------cCCCcEEEEECCCCe---EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCC
Q 005254 103 GPAIGMACHPSGG-LLATA----------GADRKVLVWDVDGGF---CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168 (706)
Q Consensus 103 ~~v~~~~~s~~~~-~l~~~----------~~d~~i~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 168 (706)
..|.+++|+|+++ +|+++ +.|+.|++||+.+++ .+..+ .|...|.+++|+|+++. |++++.||
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~--l~~~~~dg 89 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKI--IAGALDNG 89 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSC--EEEEESSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCe--EEEEccCC
Confidence 4678899999987 99999 889999999999875 33333 58999999999999887 99999999
Q ss_pred eEEEEECCC----CeeEEEeecccceEEEEEEecC-CCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCC
Q 005254 169 TVRVWDLLA----KKCVATLDKHFSRVTSMAITSD-GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA 243 (706)
Q Consensus 169 ~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (706)
.|++||+.+ .+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+.+.+.......
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------------- 154 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT--------------- 154 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC---------------
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc---------------
Confidence 999999987 4578888999999999999998 89999999999999999876541100000
Q ss_pred cccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEe
Q 005254 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 323 (706)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 323 (706)
T Consensus 155 -------------------------------------------------------------------------------- 154 (416)
T 2pm9_A 155 -------------------------------------------------------------------------------- 154 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEee
Q 005254 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD 403 (706)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~ 403 (706)
.........|...+.++.
T Consensus 155 --------------------------------------------------------------~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 155 --------------------------------------------------------------PLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp --------------------------------------------------------------CBCCCCSCCSSCCCCEEE
T ss_pred --------------------------------------------------------------ccccccccCCCCCeeEEE
Confidence 000001234555666666
Q ss_pred eeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC------CcCeEEEEEecCCCeEEEEecCCC---eEEEEEecCC
Q 005254 404 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH------MGAVGAVAFSKKLQNFLVSGSSDH---TIKVWSFDGL 474 (706)
Q Consensus 404 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~d~---~i~i~~~~~~ 474 (706)
+.+++..++++++.|+.|++||+.+++.+..+..+ ...+.+++|+|++..++++++.|+ .|++||++..
T Consensus 173 --~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 173 --WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp --ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred --eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 77775555999999999999999999988888776 789999999999877999999998 9999999864
Q ss_pred CCCCCcccccceeEEEe-ecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCC-CEE
Q 005254 475 SDDAEQPMNLKAKAVVA-AHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD-QVV 551 (706)
Q Consensus 475 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 551 (706)
.. ....+. .|...|.+++|+| ++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++ .+|
T Consensus 251 ~~---------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l 321 (416)
T 2pm9_A 251 NT---------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLF 321 (416)
T ss_dssp TS---------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEE
T ss_pred CC---------CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEE
Confidence 21 233344 6889999999999 99999999999999999999999999999999999999999999 899
Q ss_pred EEecCCCcEEEEEcCCCceEEEEe-----------------------------------ecccCEEEEEEEeCCCEEEEE
Q 005254 552 ITASGDKTIKIWSISDGSCLKTFE-----------------------------------GHTSSVLRASFLTRGAQIVSC 596 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~~~~~~~~~-----------------------------------~~~~~i~~~~~s~~~~~l~~~ 596 (706)
++++.|+.|++||+.++....... .|..++.+++|+|+|++|+++
T Consensus 322 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~ 401 (416)
T 2pm9_A 322 ACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQIT 401 (416)
T ss_dssp EECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBC
T ss_pred EEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEe
Confidence 999999999999998765322211 156677899999999999999
Q ss_pred eCCCCEEEEECCCC
Q 005254 597 GADGLVKLWTVRTG 610 (706)
Q Consensus 597 ~~dg~i~iwd~~~~ 610 (706)
+.||.|+||++.+.
T Consensus 402 ~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 402 PDGKGVSITNPKIS 415 (416)
T ss_dssp TTSSCBCCBCCCCC
T ss_pred CCCCeEEEEEeccC
Confidence 99999999999764
No 41
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.1e-41 Score=328.35 Aligned_cols=290 Identities=29% Similarity=0.524 Sum_probs=247.0
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCc------------------cEEEEEEccCCCEEEEEeccCeEE
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSD------------------TITALALSPDDKLLFSSGHSREIR 85 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~------------------~i~~l~~s~~~~~l~s~~~d~~i~ 85 (706)
+++|||||++||+++++.+.+|++.+++.+..+.+|.. .|++++|+|+|++||+|+.|+.|+
T Consensus 69 ~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~ 148 (393)
T 1erj_A 69 CVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 148 (393)
T ss_dssp EEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEE
Confidence 89999999999999988999999999998888876542 499999999999999999999999
Q ss_pred EEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcC-CCCceEEEEE
Q 005254 86 VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP-DTDKSLLFSG 164 (706)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~ 164 (706)
+||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++....+. +...+.+++|+| ++.. +++|
T Consensus 149 iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~--l~~~ 225 (393)
T 1erj_A 149 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKY--IAAG 225 (393)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCE--EEEE
T ss_pred EEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCE--EEEE
Confidence 99999999999999999999999999999999999999999999999999888776 677899999999 6555 9999
Q ss_pred ecCCeEEEEECCCCeeEEEe-------ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEe
Q 005254 165 SDDATVRVWDLLAKKCVATL-------DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCA 237 (706)
Q Consensus 165 ~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 237 (706)
+.||.|++||+++++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++........
T Consensus 226 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~---------- 295 (393)
T 1erj_A 226 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK---------- 295 (393)
T ss_dssp ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------------
T ss_pred cCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc----------
Confidence 99999999999999887776 5788999999999999999999999999999986532111000
Q ss_pred eCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCC
Q 005254 238 IPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQ 317 (706)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T Consensus 296 -------------------------------------------------------------------------------- 295 (393)
T 1erj_A 296 -------------------------------------------------------------------------------- 295 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcc
Q 005254 318 GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397 (706)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 397 (706)
....+.+...+.+|..
T Consensus 296 ----------------------------------------------------------------~~~~~~~~~~~~~h~~ 311 (393)
T 1erj_A 296 ----------------------------------------------------------------TPNSGTCEVTYIGHKD 311 (393)
T ss_dssp ---------------------------------------------------------------------CEEEEEECCSS
T ss_pred ----------------------------------------------------------------CCCCCcceEEEecccC
Confidence 0001112234567888
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecC-----CCeEEEEecCCCeEEEEEec
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK-----LQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~d~~i~i~~~~ 472 (706)
.+.++. +.+++.. +++|+.|+.|++||..+++.+..+.+|...|.+++|++. ...+|++++.||+|++|++.
T Consensus 312 ~v~~~~--~~~~~~~-l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 312 FVLSVA--TTQNDEY-ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp CEEEEE--ECGGGCE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred cEEEEE--ECCCCCE-EEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 888887 7787777 999999999999999999999999999999999999873 13489999999999999986
Q ss_pred C
Q 005254 473 G 473 (706)
Q Consensus 473 ~ 473 (706)
.
T Consensus 389 ~ 389 (393)
T 1erj_A 389 K 389 (393)
T ss_dssp E
T ss_pred c
Confidence 4
No 42
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-41 Score=319.90 Aligned_cols=298 Identities=21% Similarity=0.334 Sum_probs=235.0
Q ss_pred cCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC--eEEEEe-ec-cCCCeEEEEECCCCCEEEEecCC
Q 005254 48 SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL--KCLRSW-KG-HDGPAIGMACHPSGGLLATAGAD 123 (706)
Q Consensus 48 ~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~d 123 (706)
.+.+.+..+.+|..+|.+++|+|+ +||+|+.|+.|++||+.++ +.+..+ .+ |...|.+++|+|++++|++++.|
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 355678889999999999999988 9999999999999999875 455666 44 99999999999999999999999
Q ss_pred CcEEEEECCC-------CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC----CeeEEEeecccceEE
Q 005254 124 RKVLVWDVDG-------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA----KKCVATLDKHFSRVT 192 (706)
Q Consensus 124 ~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~ 192 (706)
++|++||+.. .+.+..+.+|...|.+++|+|+++. |++++.|+.|++||+.. .+++..+.+|...|.
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~--las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY--LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCE--EEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCE--EEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 9999999853 4567788899999999999998876 99999999999999943 256778889999999
Q ss_pred EEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecC
Q 005254 193 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 272 (706)
Q Consensus 193 ~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (706)
+++|+|++.+|++++.|+.|++||..++.
T Consensus 158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~--------------------------------------------------- 186 (330)
T 2hes_X 158 HVIWHPSEALLASSSYDDTVRIWKDYDDD--------------------------------------------------- 186 (330)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTE---------------------------------------------------
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCC---------------------------------------------------
Confidence 99999999999999999999999864211
Q ss_pred CCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEeccc
Q 005254 273 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352 (706)
Q Consensus 273 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (706)
T Consensus 187 -------------------------------------------------------------------------------- 186 (330)
T 2hes_X 187 -------------------------------------------------------------------------------- 186 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCC-CEEEEEeeCCCcEEEEeCCCc
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG-KILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~ 431 (706)
.++...+.+|...|.++. +.|++ ..++++++.|++|++||+..+
T Consensus 187 ---------------------------------~~~~~~~~~h~~~v~~~~--~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 187 ---------------------------------WECVAVLNGHEGTVWSSD--FDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp ---------------------------------EEEEEEECCCSSCEEEEE--ECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred ---------------------------------eeEEEEccCCCCcEEEEE--ecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 011224556777777776 66652 234899999999999998754
Q ss_pred --------eEEEEEeC-CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccccee-EEEeecCc-ceEEE
Q 005254 432 --------CCVGVGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK-AVVAAHGK-DINSL 500 (706)
Q Consensus 432 --------~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~i~~~ 500 (706)
.....+.. |...|.+++|++++ ++++++.||.|++|+...+. .... .....|.. .|.++
T Consensus 232 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~--------~~~~~~~~~~h~~~~v~~v 301 (330)
T 2hes_X 232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGE--------WKVFAKRALCHGVYEINVV 301 (330)
T ss_dssp CTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTE--------EEEEEEESCTTTTSCEEEE
T ss_pred CccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCc--------eEEEeccccccccceEEEE
Confidence 34444544 88999999999764 69999999999999986431 0111 12245666 89999
Q ss_pred EEcC--CCCEEEEeeCCCcEEEEeCCC
Q 005254 501 AVAP--NDSLVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 501 ~~s~--~~~~l~~~~~dg~i~i~d~~~ 525 (706)
+|+| ++++|++|+.||.|++||+.+
T Consensus 302 ~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 302 KWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999 789999999999999999864
No 43
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.9e-41 Score=321.40 Aligned_cols=294 Identities=20% Similarity=0.282 Sum_probs=251.8
Q ss_pred eeEEeeEecccCceeeEeeE-----eCCCCcEEEEEecCCcEEEEeCCCc-------eeeEeeeCCcceEEEeeeeeecC
Q 005254 342 ELILSKRLVGYNEEILDLKF-----LGEEEQYLAVATNIEQVQVYDLSSM-------SCSYVLAGHSEIVLCLDTCALSS 409 (706)
Q Consensus 342 ~~~~~~~~~~~~~~v~~~~~-----~~~~~~~l~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~ 409 (706)
.......+.+|...|.+++| .++++.+|++++.|+.|++||+... .....+.+|...|.++. +.++
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~--~~~~ 87 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA--LSQE 87 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEE--ECSS
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEE--ECCC
Confidence 33455677899999999999 6668899999999999999998743 45667889999999998 8888
Q ss_pred CCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE
Q 005254 410 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (706)
Q Consensus 410 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 489 (706)
+.. +++++.|++|++||+.+++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+... ....
T Consensus 88 ~~~-l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~-----------~~~~ 154 (343)
T 2xzm_R 88 NCF-AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGE-----------CKFS 154 (343)
T ss_dssp TTE-EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSC-----------EEEE
T ss_pred CCE-EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCC-----------ceee
Confidence 877 99999999999999999999999999999999999999988 8999999999999998632 1111
Q ss_pred E---eecCcceEEEEEcCCC----------CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC
Q 005254 490 V---AAHGKDINSLAVAPND----------SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG 556 (706)
Q Consensus 490 ~---~~~~~~i~~~~~s~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 556 (706)
. ..|...|.+++|+|++ .++++++.||.|++|| .+.+....+.+|...|.+++|+|++++|++++.
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~ 233 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcC
Confidence 1 2577889999999987 7999999999999999 456777788999999999999999999999999
Q ss_pred CCcEEEEEcCC-CceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE--Eec-----------cCCCc
Q 005254 557 DKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TYD-----------KHEDK 622 (706)
Q Consensus 557 dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~ 622 (706)
||.|++||+.+ ......+. +...|.+++|+|++++++++ .|+.|++||+.+++... .+. +|...
T Consensus 234 dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (343)
T 2xzm_R 234 DKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ 311 (343)
T ss_dssp TCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC
T ss_pred CCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc
Confidence 99999999944 44444443 56789999999999887755 57889999998876443 443 68889
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 623 IWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 623 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
|.+++|+|++++|++|+.||.|++|++.++.
T Consensus 312 v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 312 CTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred eEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 9999999999999999999999999987653
No 44
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.7e-40 Score=314.11 Aligned_cols=293 Identities=25% Similarity=0.449 Sum_probs=265.1
Q ss_pred eEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 343 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
......+.+|...|.+++|.| +++++++++.++.+++|+..+++....+.+|...+.++. +.|+++. +++++.|+.
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~s~~~d~~ 88 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA--WSSDSNL-LVSASDDKT 88 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSE
T ss_pred ceeEEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEE--EcCCCCE-EEEECCCCE
Confidence 344567788999999999987 778999999999999999999999999999999999998 8888877 999999999
Q ss_pred EEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEE
Q 005254 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 502 (706)
|++||+.+++.+..+..|...|.+++|+|++. ++++++.|+.|++||+.... ....+..|..+|.+++|
T Consensus 89 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~ 157 (312)
T 4ery_A 89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGK----------CLKTLPAHSDPVSAVHF 157 (312)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCC----------EEEEECCCSSCEEEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCE----------EEEEecCCCCcEEEEEE
Confidence 99999999999999999999999999999987 89999999999999997653 55667788999999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCccEEEEEe-ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCE
Q 005254 503 APNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581 (706)
Q Consensus 503 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 581 (706)
+|++++|++++.||.|++||+.+++.+..+. .+...+..++|+|++++|++++.|+.|++||+.+++++..+.+|....
T Consensus 158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 237 (312)
T 4ery_A 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 237 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSS
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCce
Confidence 9999999999999999999999998887765 466789999999999999999999999999999999999998887643
Q ss_pred EE--EEEE-eCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEECC
Q 005254 582 LR--ASFL-TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGG--SDALVNLWHDS 650 (706)
Q Consensus 582 ~~--~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vw~~~ 650 (706)
.. ..++ +++.+|++++.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 238 ~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 22 3344 6788999999999999999999999999999999999999999999999987 69999999975
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-41 Score=339.31 Aligned_cols=342 Identities=14% Similarity=0.166 Sum_probs=283.5
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeecc
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 101 (706)
.+++|+|+|++|++++.+ .|++||..+++....+..| ..+....|+|++++||+++.||.|++||+.+++....+.+|
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 138 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAH 138 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSS
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccc
Confidence 379999999999999866 8999999988877777766 55566688999999999999999999999999999998999
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeE
Q 005254 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 181 (706)
Q Consensus 102 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 181 (706)
...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++. +++++.||.|++||+++++.+
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN--VLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTE--EEEEETTSCEEEEETTTTEEE
T ss_pred cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCE--EEEEcCCCcEEEeECCCCcee
Confidence 999999999999999999999999999999999999999999999999999998876 999999999999999999999
Q ss_pred EEeec---ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhc
Q 005254 182 ATLDK---HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 258 (706)
Q Consensus 182 ~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (706)
..+.. |...+.+++|.+++...+.
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~----------------------------------------------------- 243 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLH----------------------------------------------------- 243 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCG-----------------------------------------------------
T ss_pred EEeecCCCCCCCccEEEEecCCcceee-----------------------------------------------------
Confidence 88874 5567888777765432100
Q ss_pred cccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccc
Q 005254 259 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE 338 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 338 (706)
T Consensus 244 -------------------------------------------------------------------------------- 243 (420)
T 3vl1_A 244 -------------------------------------------------------------------------------- 243 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee
Q 005254 339 KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS 418 (706)
Q Consensus 339 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 418 (706)
..+...+.++. ++|+++. +++++
T Consensus 244 ------------------------------------------------------~~~~~~v~~~~--~s~~~~~-l~~~~ 266 (420)
T 3vl1_A 244 ------------------------------------------------------EISTSKKNNLE--FGTYGKY-VIAGH 266 (420)
T ss_dssp ------------------------------------------------------GGCCCCCCTTC--SSCTTEE-EEEEE
T ss_pred ------------------------------------------------------ecccCcccceE--EcCCCCE-EEEEc
Confidence 00111122222 5565555 88899
Q ss_pred CCCcEEEEeCCCceEEEEEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee-cCcc
Q 005254 419 KDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKD 496 (706)
Q Consensus 419 ~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 496 (706)
.||.|++||+.+++.+..+. .|...+.+++|+|+++.++++++.||.|++||+..... ....+.. +...
T Consensus 267 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---------~~~~~~~~~~~~ 337 (420)
T 3vl1_A 267 VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC---------PVGEFLINEGTP 337 (420)
T ss_dssp TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---------CSEEEEESTTSC
T ss_pred CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---------chhhhhccCCCC
Confidence 99999999998888776654 57889999999999887899999999999999986531 2334444 6777
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEeCCCc---------cEEEEEeecCCcEEEEEEccCCC---EEEEecCCCcEEEEE
Q 005254 497 INSLAVAPNDSLVCTGSQDRTACVWRLPDL---------VSVVTFRGHKRGIWSVEFSPVDQ---VVITASGDKTIKIWS 564 (706)
Q Consensus 497 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~iwd 564 (706)
+.++.+ +++++|++++.||.|++|++... .....+..|...|.+++|+|+++ .+++++.+|.+.+|+
T Consensus 338 v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 338 INNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred ceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 888855 57889999999999999998763 22334567889999999999999 777888899999999
Q ss_pred cCC
Q 005254 565 ISD 567 (706)
Q Consensus 565 ~~~ 567 (706)
+++
T Consensus 417 ~~~ 419 (420)
T 3vl1_A 417 LSN 419 (420)
T ss_dssp SCC
T ss_pred ccC
Confidence 864
No 46
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.4e-40 Score=331.30 Aligned_cols=325 Identities=29% Similarity=0.545 Sum_probs=262.7
Q ss_pred CCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeE
Q 005254 91 TLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 170 (706)
..+....+.+|...+.. ++++++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++ + ++++|+.||.|
T Consensus 107 ~~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~--~l~s~~~dg~i 181 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--N--IIISGSTDRTL 181 (445)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--T--EEEEEETTSCE
T ss_pred CcceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC--C--EEEEEeCCCeE
Confidence 34456778899887533 3555689999999999999999999999999999999999999984 3 49999999999
Q ss_pred EEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccc
Q 005254 171 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250 (706)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (706)
++||+.+++.+..+.+|...|.+++|+ ++.+++++.||.|++||+.+++..
T Consensus 182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~--------------------------- 232 (445)
T 2ovr_B 182 KVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCL--------------------------- 232 (445)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEE---------------------------
T ss_pred EEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEE---------------------------
Confidence 999999999999999999999999885 457888888888888887542211
Q ss_pred ccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEE
Q 005254 251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (706)
T Consensus 233 -------------------------------------------------------------------------------- 232 (445)
T 2ovr_B 233 -------------------------------------------------------------------------------- 232 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCC
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG 410 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 410 (706)
..+.+|...+.++. + ++
T Consensus 233 -----------------------------------------------------------~~~~~~~~~v~~~~--~--~~ 249 (445)
T 2ovr_B 233 -----------------------------------------------------------HVLMGHVAAVRCVQ--Y--DG 249 (445)
T ss_dssp -----------------------------------------------------------EEEECCSSCEEEEE--E--CS
T ss_pred -----------------------------------------------------------EEEcCCcccEEEEE--E--CC
Confidence 11222333344433 2 22
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 490 (706)
.. +++++.||.|++||+.+++ ....+
T Consensus 250 ~~-l~~~~~dg~i~iwd~~~~~-----------------------------------------------------~~~~~ 275 (445)
T 2ovr_B 250 RR-VVSGAYDFMVKVWDPETET-----------------------------------------------------CLHTL 275 (445)
T ss_dssp SC-EEEEETTSCEEEEEGGGTE-----------------------------------------------------EEEEE
T ss_pred CE-EEEEcCCCEEEEEECCCCc-----------------------------------------------------EeEEe
Confidence 22 4444444444444444333 23334
Q ss_pred eecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce
Q 005254 491 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 570 (706)
Q Consensus 491 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 570 (706)
..|...|.++++ ++.++++++.||.|++||+.+++.+..+.+|...+.++.++ +++|++++.||.|++||+.++++
T Consensus 276 ~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~ 351 (445)
T 2ovr_B 276 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQC 351 (445)
T ss_dssp CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE
T ss_pred cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcE
Confidence 456666777777 67889999999999999999999999999999999988875 67999999999999999999999
Q ss_pred EEEEee---cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEe-----ccCCCcEEEEEEcCCCCEEEEEeCCC
Q 005254 571 LKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-----DKHEDKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 571 ~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg 642 (706)
+..+.. |...|++++|+ +++|++++.||.|++||+.+++.+..+ ..|.+.|++++|+|++.++++++.||
T Consensus 352 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg 429 (445)
T 2ovr_B 352 LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 429 (445)
T ss_dssp EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCC
Confidence 999986 88899999985 679999999999999999999999888 47889999999999999999999999
Q ss_pred c----EEEEECCch
Q 005254 643 L----VNLWHDSTA 652 (706)
Q Consensus 643 ~----i~vw~~~~~ 652 (706)
+ +.+||+...
T Consensus 430 ~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 430 TEETKLLVLDFDVD 443 (445)
T ss_dssp SSCCEEEEEECCCC
T ss_pred CCccEEEEEECCCC
Confidence 8 999999865
No 47
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-42 Score=345.30 Aligned_cols=336 Identities=16% Similarity=0.248 Sum_probs=274.4
Q ss_pred eccceEEcCCCC-EEEEe----------eCC-eEEEEEccCCe---EEEeecCCCccEEEEEEccCCCEEEEEeccCeEE
Q 005254 21 GGGPLVVSSDGS-FIACA----------CGE-SINIVDLSNAS---IKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85 (706)
Q Consensus 21 ~~~~~~~s~dg~-~l~~~----------~~~-~i~i~d~~~~~---~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~ 85 (706)
...+++|+|||+ +|+++ +.+ .|++||+.+++ .+..+ .|...|++++|+|++++|++++.||.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 345699999998 88887 444 89999998876 33333 5889999999999999999999999999
Q ss_pred EEECCC----CeEEEEeeccCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCe------EEE---EeeCCCCcEEEEE
Q 005254 86 VWDLST----LKCLRSWKGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGF------CTH---YFKGHKGVVSSIL 151 (706)
Q Consensus 86 iwd~~~----~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~vw~~~~~~------~~~---~~~~~~~~v~~~~ 151 (706)
+||+.+ .+.+..+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++ ... .+..|...|.+++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 999988 4588899999999999999998 8999999999999999999876 333 2367999999999
Q ss_pred EcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecc------cceEEEEEEecCC-CEEEEEeCCC---EEEEEeCCCCc
Q 005254 152 FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH------FSRVTSMAITSDG-STLISAGRDK---VVNLWDLRDYS 221 (706)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~dg---~i~~w~~~~~~ 221 (706)
|+|++. .++++++.||.|++||+++++.+..+..| ...+.+++|+|++ .++++++.++ .|++||+++..
T Consensus 173 ~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 173 WNQSLA-HVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp ECSSCT-TEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred eCCCCC-cEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 999832 24899999999999999999999888776 7899999999997 5899999888 89999987532
Q ss_pred ceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccC
Q 005254 222 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMD 301 (706)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (706)
..
T Consensus 252 ~~------------------------------------------------------------------------------ 253 (416)
T 2pm9_A 252 TP------------------------------------------------------------------------------ 253 (416)
T ss_dssp SC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEE
Q 005254 302 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 381 (706)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~ 381 (706)
T Consensus 254 -------------------------------------------------------------------------------- 253 (416)
T 2pm9_A 254 -------------------------------------------------------------------------------- 253 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCceeeEeee-CCcceEEEeeeeeec-CCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEE
Q 005254 382 DLSSMSCSYVLA-GHSEIVLCLDTCALS-SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459 (706)
Q Consensus 382 d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 459 (706)
...+. +|...+.++. ++| ++.. +++++.|+.|++||+.+++.+..+..|...|.+++|+|+++.++++
T Consensus 254 -------~~~~~~~~~~~v~~~~--~s~~~~~~-l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 254 -------LQTLNQGHQKGILSLD--WCHQDEHL-LLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp -------SBCCCSCCSSCEEEEE--ECSSCSSC-EEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEE
T ss_pred -------cEEeecCccCceeEEE--eCCCCCCe-EEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEE
Confidence 01222 4566677776 777 4554 9999999999999999999999999999999999999998559999
Q ss_pred ecCCCeEEEEEecCCCCCCCccc-----cccee--------------------EEEeecCcceEEEEEcCCCCEEEEeeC
Q 005254 460 GSSDHTIKVWSFDGLSDDAEQPM-----NLKAK--------------------AVVAAHGKDINSLAVAPNDSLVCTGSQ 514 (706)
Q Consensus 460 ~~~d~~i~i~~~~~~~~~~~~~~-----~~~~~--------------------~~~~~~~~~i~~~~~s~~~~~l~~~~~ 514 (706)
++.|+.|++|++........... ..... .....+..++.+++|+|+|++|++++.
T Consensus 324 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~ 403 (416)
T 2pm9_A 324 ASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD 403 (416)
T ss_dssp CCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT
T ss_pred EecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC
Confidence 99999999999987653322100 00000 011125677889999999999999999
Q ss_pred CCcEEEEeCCCc
Q 005254 515 DRTACVWRLPDL 526 (706)
Q Consensus 515 dg~i~i~d~~~~ 526 (706)
|+.|++|++.+.
T Consensus 404 d~~v~~w~~~~~ 415 (416)
T 2pm9_A 404 GKGVSITNPKIS 415 (416)
T ss_dssp SSCBCCBCCCCC
T ss_pred CCeEEEEEeccC
Confidence 999999998764
No 48
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=2.7e-39 Score=356.82 Aligned_cols=521 Identities=11% Similarity=0.080 Sum_probs=380.1
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc------CeEEEEECCCCeEEEE
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS------REIRVWDLSTLKCLRS 97 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~ 97 (706)
..+||| +.|+++..+.|++|++.+++. ..+.+|...+.+++|||||++||+++.+ ..|.+||+.+++ ...
T Consensus 19 ~~~~S~--~~iaf~~~~~l~~~~~~gg~~-~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~ 94 (1045)
T 1k32_A 19 NPDIHG--DRIIFVCCDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKR 94 (1045)
T ss_dssp EEEEET--TEEEEEETTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEE
T ss_pred CcEEeC--CEEEEEECCcEEEEECCCCcE-EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEE
Confidence 577885 599999989999999988775 5677899999999999999999987543 479999998887 567
Q ss_pred eeccCCCe-------EEEEECCCCCEEEEecCC------CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE
Q 005254 98 WKGHDGPA-------IGMACHPSGGLLATAGAD------RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG 164 (706)
Q Consensus 98 ~~~~~~~v-------~~~~~s~~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 164 (706)
+..|...+ ..++|||||+++++++.+ ..|.+|++.+++...... +. ...++|+| | +++++
T Consensus 95 lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~--~~~~~~sp-G---~l~~~ 167 (1045)
T 1k32_A 95 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-GP--ATHILFAD-G---RRVIG 167 (1045)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-CS--CSEEEEET-T---EEEEE
T ss_pred cccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecC-CC--cceeeeCC-C---EEEEe
Confidence 88888888 999999999977777643 458888888887544333 32 34677999 6 47776
Q ss_pred ec------------CCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC-CcceeeecCcce
Q 005254 165 SD------------DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD-YSCKLTVPTYEM 231 (706)
Q Consensus 165 ~~------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~-~~~~~~~~~~~~ 231 (706)
+. +....+|....+.....+.+|...+.++.|+++ .++++++.++.+.+|.+.. +.....+.....
T Consensus 168 ~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~ 246 (1045)
T 1k32_A 168 RNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD 246 (1045)
T ss_dssp ESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS
T ss_pred ccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC
Confidence 53 234566654333445566889999999999988 6677777888888887653 333333333334
Q ss_pred eeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEE
Q 005254 232 VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAAT 311 (706)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (706)
.....+++++. .++.+ .++.|++|+.....+.........
T Consensus 247 ~~~~~~SpDG~-----------------------~la~~-~~~~i~~~d~~~~~l~~l~~~~~~---------------- 286 (1045)
T 1k32_A 247 YYPRHLNTDGR-----------------------RILFS-KGGSIYIFNPDTEKIEKIEIGDLE---------------- 286 (1045)
T ss_dssp SCEEEEEESSS-----------------------CEEEE-ETTEEEEECTTTCCEEECCCCCCC----------------
T ss_pred cceeeEcCCCC-----------------------EEEEE-eCCEEEEecCCceEeeeeccCccc----------------
Confidence 44557777775 23333 588999999854433211000000
Q ss_pred EccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEe
Q 005254 312 VLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV 391 (706)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~ 391 (706)
.......+...+..++|++++++.++++. ++.+.+|+...+....
T Consensus 287 ---------------------------------~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~- 331 (1045)
T 1k32_A 287 ---------------------------------SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK- 331 (1045)
T ss_dssp ---------------------------------BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-
T ss_pred ---------------------------------ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-
Confidence 00001123345667777723566666655 6788889888776543
Q ss_pred eeCCcc-eEEEeeeeeecCCCEEEEEeeCCCcEE-EEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEE
Q 005254 392 LAGHSE-IVLCLDTCALSSGKILIVTGSKDNSVR-LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469 (706)
Q Consensus 392 ~~~~~~-~i~~~~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 469 (706)
+..+.. .+..+. ++ +++. ++.++.++.+. +|+..+++.... ..+...+..++|+|+|+ +|++++.++.|++|
T Consensus 332 ~~~~~~~~~~~~~--~s-dg~~-l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 332 VPEPLRIRYVRRG--GD-TKVA-FIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGK-FAVVANDRFEIMTV 405 (1045)
T ss_dssp CSCCSCEEEEEEC--SS-SEEE-EEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred ccCCCcceEEeee--Ec-CCCe-EEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCC-EEEEECCCCeEEEE
Confidence 455555 777776 66 6666 77777788888 999988765544 37778999999999998 78889999999999
Q ss_pred EecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC----------cEEEEeCCCccEEEEEeecCCcE
Q 005254 470 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR----------TACVWRLPDLVSVVTFRGHKRGI 539 (706)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~v 539 (706)
|+..+. .......|...+.+++|+|||++|++++.++ .|++||+.+++ ...+..|...+
T Consensus 406 d~~tg~----------~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~ 474 (1045)
T 1k32_A 406 DLETGK----------PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHD 474 (1045)
T ss_dssp ETTTCC----------EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBE
T ss_pred ECCCCc----------eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCccc
Confidence 997653 4444557888899999999999999887654 89999999887 66777788889
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEEcCCCc-------------------------------------------eEEEEee
Q 005254 540 WSVEFSPVDQVVITASGDKTIKIWSISDGS-------------------------------------------CLKTFEG 576 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-------------------------------------------~~~~~~~ 576 (706)
..++|+|||++|++++.++...+|+..... .+..+..
T Consensus 475 ~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~ 554 (1045)
T 1k32_A 475 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV 554 (1045)
T ss_dssp EEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSC
T ss_pred CCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCC
Confidence 999999999999999887776666542211 1233344
Q ss_pred cccCEEEEEEEeCCCEEEE-------------EeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc
Q 005254 577 HTSSVLRASFLTRGAQIVS-------------CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL 643 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~-------------~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 643 (706)
|.+.+..+.++|||+++++ ......|.+||+.+++..... ..+.+++|||||++|++++.| .
T Consensus 555 ~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG~~l~~~~~~-~ 629 (1045)
T 1k32_A 555 DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NNLTDLRLSADRKTVMVRKDD-G 629 (1045)
T ss_dssp CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EEEEEEEECTTSCEEEEEETT-S
T ss_pred CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee----cCcceEEECCCCCEEEEEcCC-c
Confidence 6677899999999987775 123457889999988754332 568899999999999998866 7
Q ss_pred EEEEECCchh
Q 005254 644 VNLWHDSTAA 653 (706)
Q Consensus 644 i~vw~~~~~~ 653 (706)
+++|++.+++
T Consensus 630 i~~~d~~~~~ 639 (1045)
T 1k32_A 630 KIYTFPLEKP 639 (1045)
T ss_dssp CEEEEESSCT
T ss_pred EEEEeCccCc
Confidence 9999998776
No 49
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.4e-40 Score=322.28 Aligned_cols=285 Identities=27% Similarity=0.462 Sum_probs=250.9
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcc------------------eEEEeeeeeecCCCE
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE------------------IVLCLDTCALSSGKI 412 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~------------------~i~~~~~~~~~~~~~ 412 (706)
+|...|.+++|+| +++++++++ ++.+++|++.+++....+..+.. .|.++. ++|+++.
T Consensus 62 ~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~--~s~dg~~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC--FSPDGKF 137 (393)
T ss_dssp ECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE--ECTTSSE
T ss_pred CCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE--ECCCCCE
Confidence 5889999999998 677888876 58999999999988877765532 377777 8888887
Q ss_pred EEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee
Q 005254 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 492 (706)
+++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++. +|++++.|++|++||+..+ .......
T Consensus 138 -l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~-----------~~~~~~~ 204 (393)
T 1erj_A 138 -LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTG-----------QCSLTLS 204 (393)
T ss_dssp -EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTT-----------EEEEEEE
T ss_pred -EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCC-----------eeEEEEE
Confidence 99999999999999999999999999999999999999987 8999999999999999765 2222334
Q ss_pred cCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEE-------eecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 493 HGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTF-------RGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 493 ~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
+...+.+++++| +++++++++.||.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 667899999999 8999999999999999999999887776 57899999999999999999999999999999
Q ss_pred cCCC------------ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcC--
Q 005254 565 ISDG------------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-- 630 (706)
Q Consensus 565 ~~~~------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-- 630 (706)
+.+. .+...+.+|...|.+++|+|++++|++++.||.|++||+.+++++..+.+|.+.|.+++|++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~ 364 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 364 (393)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSC
T ss_pred CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCc
Confidence 9753 45667888999999999999999999999999999999999999999999999999999986
Q ss_pred ----CCCEEEEEeCCCcEEEEECCch
Q 005254 631 ----KTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 631 ----~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
++++|++|+.||+|++|++...
T Consensus 365 ~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 365 SLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CcCCCCCEEEEECCCCcEEECccccc
Confidence 6889999999999999998654
No 50
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.4e-40 Score=328.23 Aligned_cols=322 Identities=28% Similarity=0.525 Sum_probs=278.0
Q ss_pred CeEEEeecCCCccE-EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEE
Q 005254 50 ASIKSTIEGGSDTI-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV 128 (706)
Q Consensus 50 ~~~~~~l~~~~~~i-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 128 (706)
.+....+.+|...| ++ ++++|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++++++++.|+.|++
T Consensus 108 ~~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred cceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 33457788998865 55 45568999999999999999999999999999999999999998 669999999999999
Q ss_pred EECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC
Q 005254 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 129 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 208 (706)
||+.+++.+..+.+|...|.+++|++ +. +++|+.||.|++||+.+++.+..+.+|...+.+++| +++++++++.
T Consensus 184 wd~~~~~~~~~~~~h~~~v~~~~~~~--~~--l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 257 (445)
T 2ovr_B 184 WNAETGECIHTLYGHTSTVRCMHLHE--KR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY 257 (445)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEET--TE--EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET
T ss_pred EECCcCcEEEEECCCCCcEEEEEecC--CE--EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC
Confidence 99999999999999999999999964 44 999999999999999999999999999999999999 7789999999
Q ss_pred CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 209 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
||.|++||+++++.+
T Consensus 258 dg~i~iwd~~~~~~~----------------------------------------------------------------- 272 (445)
T 2ovr_B 258 DFMVKVWDPETETCL----------------------------------------------------------------- 272 (445)
T ss_dssp TSCEEEEEGGGTEEE-----------------------------------------------------------------
T ss_pred CCEEEEEECCCCcEe-----------------------------------------------------------------
Confidence 999999987643321
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcE
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 368 (706)
T Consensus 273 -------------------------------------------------------------------------------- 272 (445)
T 2ovr_B 273 -------------------------------------------------------------------------------- 272 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEE
Q 005254 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 448 (706)
..+.+|...+.++. + ++.. +++++.|+.|++||+.+++.+..+..|...+.++.
T Consensus 273 ---------------------~~~~~~~~~v~~~~--~--~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 326 (445)
T 2ovr_B 273 ---------------------HTLQGHTNRVYSLQ--F--DGIH-VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 326 (445)
T ss_dssp ---------------------EEECCCSSCEEEEE--E--CSSE-EEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred ---------------------EEecCCCCceEEEE--E--CCCE-EEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEE
Confidence 12334555666665 3 4555 89999999999999999999999999999999888
Q ss_pred EecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee---cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 525 (706)
++++ ++++++.||.|++||+..+. ....+.. |...|.+++++ ++++++++.||.|++||+.+
T Consensus 327 ~~~~---~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 327 LKDN---ILVSGNADSTVKIWDIKTGQ----------CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EETT---EEEEEETTSCEEEEETTTCC----------EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred EeCC---EEEEEeCCCeEEEEECCCCc----------EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCC
Confidence 8644 89999999999999997653 3444444 77889999995 57999999999999999999
Q ss_pred ccEEEEE-----eecCCcEEEEEEccCCCEEEEecCCCc----EEEEEcCC
Q 005254 526 LVSVVTF-----RGHKRGIWSVEFSPVDQVVITASGDKT----IKIWSISD 567 (706)
Q Consensus 526 ~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~----i~iwd~~~ 567 (706)
++.+..+ ..|...|.+++|+|++.++++++.||+ |.+||+..
T Consensus 392 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 392 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999888 468889999999999999999999998 99999864
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.8e-40 Score=330.22 Aligned_cols=346 Identities=23% Similarity=0.346 Sum_probs=275.3
Q ss_pred eEEEEeeccCCCe-EEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 93 KCLRSWKGHDGPA-IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 93 ~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
.....+.+|...+ .++.+ ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ .+++|+.||.|+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~ 186 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVR 186 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT---EEEEEETTSCEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC---EEEEEeCCCCEE
Confidence 3556788998875 66666 56799999999999999999999999999999999999999976 499999999999
Q ss_pred EEECCCCeeEEEeecccceEEEEEEe--cCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccc
Q 005254 172 VWDLLAKKCVATLDKHFSRVTSMAIT--SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLS 249 (706)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (706)
+||+++++.+..+.+|.+.|.+++|+ ++++++++++.||.|++||+.+.............
T Consensus 187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~----------------- 249 (464)
T 3v7d_B 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY----------------- 249 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS-----------------
T ss_pred EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc-----------------
Confidence 99999999999999999999999998 57789999999999999998765432211000000
Q ss_pred cccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceE
Q 005254 250 SYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLL 329 (706)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 329 (706)
T Consensus 250 -------------------------------------------------------------------------------- 249 (464)
T 3v7d_B 250 -------------------------------------------------------------------------------- 249 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecC
Q 005254 330 LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS 409 (706)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 409 (706)
.. .. ..+.
T Consensus 250 --------------------------------------------------------------------~~--~~--~~~~ 257 (464)
T 3v7d_B 250 --------------------------------------------------------------------PL--VF--HTPE 257 (464)
T ss_dssp --------------------------------------------------------------------SE--EE--SCGG
T ss_pred --------------------------------------------------------------------ce--Ee--eccC
Confidence 00 00 0000
Q ss_pred CCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE
Q 005254 410 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (706)
Q Consensus 410 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 489 (706)
.. ...+..+.+|...+.++ ++++. ++++++.|+.|++||+.... ....
T Consensus 258 ~~-------------------~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~~~----------~~~~ 305 (464)
T 3v7d_B 258 EN-------------------PYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQMK----------CLYI 305 (464)
T ss_dssp GC-------------------TTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTTE----------EEEE
T ss_pred CC-------------------eEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCCCc----------EEEE
Confidence 00 01112234455555555 34444 77788888888888876542 4555
Q ss_pred EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc
Q 005254 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 569 (706)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 569 (706)
+..|...|.+++|+|+++++++|+.||.|++||+.+++.+..+.+|...|.+++|+ +++|++++.||.|++||+.++.
T Consensus 306 ~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc
Confidence 66788899999999999999999999999999999999999999999999999998 5899999999999999999888
Q ss_pred eEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEE-eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 570 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT-YDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 570 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
...... +...+..++|++++++|++++ ||.|++||+.+++++.. +..|...|.+++|+ +..++++++.||.+.+|-
T Consensus 384 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 384 RKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred eeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 776664 667788899999999999998 89999999999999986 56889999999997 444556667777766654
Q ss_pred C
Q 005254 649 D 649 (706)
Q Consensus 649 ~ 649 (706)
+
T Consensus 461 l 461 (464)
T 3v7d_B 461 L 461 (464)
T ss_dssp E
T ss_pred e
Confidence 3
No 52
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-42 Score=342.59 Aligned_cols=373 Identities=14% Similarity=0.227 Sum_probs=284.0
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCeEEEee-cCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCC---Ce---EEE
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNASIKSTI-EGGSDTITALALSP-DDKLLFSSGHSREIRVWDLST---LK---CLR 96 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l-~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~---~~---~~~ 96 (706)
..|+|+++.++.+. .|+ .+++.+..+ .+|...|++++|+| ++++||+|+.||.|++||+.+ +. ...
T Consensus 33 ~~f~~~~~~~~~~~-----~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 33 KEFGPIQEIVRSPN-----MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGGCCCCCCCCCCC-----GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hhcCCccccccccc-----ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 45789999888765 387 567778888 89999999999999 999999999999999999976 43 233
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC---CCeEEEEeeC------------CCCcEEEEEEcCCCCceEE
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD---GGFCTHYFKG------------HKGVVSSILFHPDTDKSLL 161 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~---~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~l 161 (706)
.+ .|...|.+++|+|++++|++++.|+.|++||++ +++....+.. +...+.++.+....+..++
T Consensus 107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 33 499999999999999999999999999999994 5554443332 4566777774432334459
Q ss_pred EEEecCCeEEEEECCCCeeEEEeec--ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeC
Q 005254 162 FSGSDDATVRVWDLLAKKCVATLDK--HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 239 (706)
Q Consensus 162 ~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 239 (706)
++++.||.|++||+++++.+..+.. |.+.|.+++|+|++++|++++.||.|++||+++++.+..+..
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------- 254 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF----------- 254 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC-----------
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec-----------
Confidence 9999999999999999999999988 899999999999999999999999999999986543332210
Q ss_pred CCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCee
Q 005254 240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319 (706)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (706)
T Consensus 255 -------------------------------------------------------------------------------- 254 (437)
T 3gre_A 255 -------------------------------------------------------------------------------- 254 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceE
Q 005254 320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399 (706)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i 399 (706)
.|...+
T Consensus 255 --------------------------------------------------------------------------~~~~~v 260 (437)
T 3gre_A 255 --------------------------------------------------------------------------GDHAPI 260 (437)
T ss_dssp --------------------------------------------------------------------------TTCEEE
T ss_pred --------------------------------------------------------------------------CCCCce
Confidence 122233
Q ss_pred EEeeee--eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCC
Q 005254 400 LCLDTC--ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477 (706)
Q Consensus 400 ~~~~~~--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 477 (706)
.++.++ +.+++. ++++++.||.|++||+.+++.+..+..|...+..+.|+|+++. + .+..
T Consensus 261 ~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l----~~~~------------ 322 (437)
T 3gre_A 261 THVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG-L----EELN------------ 322 (437)
T ss_dssp EEEEECTTTCTTEE-EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS-G----GGCC------------
T ss_pred EEEEeccccCCCcc-EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccc-c----ccce------------
Confidence 333211 233333 4999999999999999999999999999999998999988752 2 1110
Q ss_pred CCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecC---CcEEEEEEccCCCEEEEe
Q 005254 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK---RGIWSVEFSPVDQVVITA 554 (706)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~ 554 (706)
..-..|...|++++|+ ++++|++++.||.|++||+.+++....+.+|. ..+....+++...+++..
T Consensus 323 ----------~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 323 ----------FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp ----------CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred ----------ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe
Confidence 0002377889999999 78999999999999999999999998888754 345566666666555544
Q ss_pred cCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeC--CCEEEEEeCCCCEEEEE
Q 005254 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR--GAQIVSCGADGLVKLWT 606 (706)
Q Consensus 555 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iwd 606 (706)
|+...+........|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 392 --------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 --------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred --------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 333444555666679999999999998 77999999999999995
No 53
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-40 Score=314.26 Aligned_cols=294 Identities=25% Similarity=0.424 Sum_probs=240.8
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc--eeeEee-eC-CcceEEEeeeeeecCCCEEEEEeeCC
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM--SCSYVL-AG-HSEIVLCLDTCALSSGKILIVTGSKD 420 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~--~~~~~~-~~-~~~~i~~~~~~~~~~~~~~l~~~~~d 420 (706)
....+.+|...|.++.|.+. ++++++.|+.|++||+..+ .....+ .+ |...|.++. ++|+++. +++++.|
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~--~sp~~~~-las~s~D 79 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVA--WRPHTSL-LAAGSFD 79 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEE--ECTTSSE-EEEEETT
T ss_pred cceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEE--ECCCCCE-EEEEeCC
Confidence 34567789999999999864 9999999999999999875 344445 34 999999998 8888877 9999999
Q ss_pred CcEEEEeCCC-------ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec
Q 005254 421 NSVRLWDSES-------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493 (706)
Q Consensus 421 g~i~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (706)
+.|++||... .+.+..+.+|...|.+++|+|+++ +|++++.|++|++||+..... .......+..|
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~------~~~~~~~~~~h 152 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGE------EYECISVLQEH 152 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCC------CCEEEEEECCC
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCC------CeEEEEEeccC
Confidence 9999999853 456777889999999999999987 899999999999999953311 11245567789
Q ss_pred CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc--cEEEEEeecCCcEEEEEEccC--CCEEEEecCCCcEEEEEcCCC-
Q 005254 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGIWSVEFSPV--DQVVITASGDKTIKIWSISDG- 568 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~- 568 (706)
...|.+++|+|++.+|++++.|+.|++||..++ +.+..+.+|...|.+++|+|+ +.+|++++.|++|++||+.++
T Consensus 153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 232 (330)
T 2hes_X 153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232 (330)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence 999999999999999999999999999998766 677889999999999999998 678999999999999998754
Q ss_pred -------ceEEEEee-cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe--EEEE-eccCCC-cEEEEEEcC--CCCE
Q 005254 569 -------SCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--CIAT-YDKHED-KIWALAVGK--KTEM 634 (706)
Q Consensus 569 -------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~-~~~~~~-~v~~~~~s~--~~~~ 634 (706)
.+...+.. |...|.+++|++++ +|++++.||.|++||..+++ .+.. ..+|.. .|.+++|+| ++++
T Consensus 233 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~ 311 (330)
T 2hes_X 233 EDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTI 311 (330)
T ss_dssp TTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CC
T ss_pred ccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceE
Confidence 34455554 88999999999664 89999999999999998874 3333 357887 899999999 7899
Q ss_pred EEEEeCCCcEEEEECCch
Q 005254 635 FATGGSDALVNLWHDSTA 652 (706)
Q Consensus 635 l~~~~~dg~i~vw~~~~~ 652 (706)
|++++.||.|++|++.+.
T Consensus 312 las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 312 LATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp EEEEETTSEEEEEEC---
T ss_pred EEEecCCCcEEEEEeccC
Confidence 999999999999998653
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-39 Score=313.83 Aligned_cols=299 Identities=24% Similarity=0.397 Sum_probs=248.0
Q ss_pred CCCeEEEEeeccCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCe-----EEEEeeCCCCcEEEEEEcCCCCceEEEE
Q 005254 90 STLKCLRSWKGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGF-----CTHYFKGHKGVVSSILFHPDTDKSLLFS 163 (706)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 163 (706)
++.++..+|++|.+.|++|+|+|+ +++||+|+.|++|++||+.+++ +...+.+|...|.+++|+|+++. +++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~--l~s 103 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF--ALS 103 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSE--EEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCE--EEE
Confidence 445667789999999999999997 6899999999999999997643 56778899999999999998876 999
Q ss_pred EecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCC
Q 005254 164 GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA 243 (706)
Q Consensus 164 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (706)
++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||........
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~------------------- 164 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT------------------- 164 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-------------------
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE-------------------
Confidence 9999999999999999988888888999999999999999999999999999875422110
Q ss_pred cccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEe
Q 005254 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 323 (706)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 323 (706)
T Consensus 165 -------------------------------------------------------------------------------- 164 (340)
T 4aow_A 165 -------------------------------------------------------------------------------- 164 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEee
Q 005254 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD 403 (706)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~ 403 (706)
....+|...+.++.
T Consensus 165 ------------------------------------------------------------------~~~~~~~~~v~~~~ 178 (340)
T 4aow_A 165 ------------------------------------------------------------------VQDESHSEWVSCVR 178 (340)
T ss_dssp ------------------------------------------------------------------ECSSSCSSCEEEEE
T ss_pred ------------------------------------------------------------------EEeccccCcccceE
Confidence 01223444455554
Q ss_pred eeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccc
Q 005254 404 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN 483 (706)
Q Consensus 404 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 483 (706)
+...+... ++++++.|+.|++||+.+++.+..+.+|...|++++|+|+++ +|++++.|+.|++||+....
T Consensus 179 ~~~~~~~~-~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~-------- 248 (340)
T 4aow_A 179 FSPNSSNP-IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGK-------- 248 (340)
T ss_dssp ECSCSSSC-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTE--------
T ss_pred EccCCCCc-EEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCc--------
Confidence 21222233 488999999999999999999999999999999999999987 89999999999999998652
Q ss_pred cceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe---------ecCCcEEEEEEccCCCEEEEe
Q 005254 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR---------GHKRGIWSVEFSPVDQVVITA 554 (706)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~ 554 (706)
.. ....+...+.+++++|++.++ +++.|+.|++||++++..+..+. +|...|++++|+|++++|++|
T Consensus 249 --~~-~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 324 (340)
T 4aow_A 249 --HL-YTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 324 (340)
T ss_dssp --EE-EEEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEE
T ss_pred --ee-eeecCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence 22 233456789999999988655 55569999999999887766554 588899999999999999999
Q ss_pred cCCCcEEEEEcCCCc
Q 005254 555 SGDKTIKIWSISDGS 569 (706)
Q Consensus 555 ~~dg~i~iwd~~~~~ 569 (706)
+.||.|+|||+++|+
T Consensus 325 s~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 325 YTDNLVRVWQVTIGT 339 (340)
T ss_dssp ETTSCEEEEEEEC--
T ss_pred eCCCEEEEEeCCCcC
Confidence 999999999999885
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-42 Score=343.82 Aligned_cols=352 Identities=12% Similarity=0.129 Sum_probs=249.8
Q ss_pred EEEeecCCCccEEEEEEccCC---------CEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecC
Q 005254 52 IKSTIEGGSDTITALALSPDD---------KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA 122 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~---------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 122 (706)
....+. +.+.|.+|+|+|++ ++||+|+.++.. -..+|+++.+++++.
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS~s~ 181 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDKEKH 181 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------CccchhhhhhccCCC
Confidence 333444 57899999999987 899999866420 013799999999999
Q ss_pred CCcEEEEECCCCeEE----EEeeCCCCcEEEEEEcCCC----CceEEEEEecCCeEEEEECCCCee-----------EEE
Q 005254 123 DRKVLVWDVDGGFCT----HYFKGHKGVVSSILFHPDT----DKSLLFSGSDDATVRVWDLLAKKC-----------VAT 183 (706)
Q Consensus 123 d~~i~vw~~~~~~~~----~~~~~~~~~v~~~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~ 183 (706)
|++|+|||+.+++.. ..+.+|.+.|..++|+|++ +..+|++++.||+|++||+.+++. ...
T Consensus 182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~ 261 (524)
T 2j04_B 182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLT 261 (524)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEE
T ss_pred CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEE
Confidence 999999999877642 3456788999999999972 345699999999999999976642 236
Q ss_pred eecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcccccc
Q 005254 184 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 263 (706)
Q Consensus 184 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (706)
+.+|...|.+++|++++ .|++|+.||.|++||++++..
T Consensus 262 l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~----------------------------------------- 299 (524)
T 2j04_B 262 LSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEV----------------------------------------- 299 (524)
T ss_dssp ECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSS-----------------------------------------
T ss_pred EEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCC-----------------------------------------
Confidence 77899999999999864 899999999999999864210
Q ss_pred ceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceee
Q 005254 264 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL 343 (706)
Q Consensus 264 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (706)
T Consensus 300 -------------------------------------------------------------------------------- 299 (524)
T 2j04_B 300 -------------------------------------------------------------------------------- 299 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
....+.+|...|.++.+.+.+++..+|++++.|++|
T Consensus 300 --------------------------------------------~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 300 --------------------------------------------PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp --------------------------------------------CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred --------------------------------------------ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 011345677778777433555553559999999999
Q ss_pred EEEeCCCceEEEEEeCCCc--CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEE
Q 005254 424 RLWDSESRCCVGVGTGHMG--AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 424 ~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (706)
++||+.+++....+.+|.. .|.+++|+|+++ .+++++.|++|++||++... ....+.+|...|++++
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~----------~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAF----------AVHPLVSRETTITAIG 404 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCTT----------CCEEEEECSSCEEEEE
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECcccc----------cceeeecCCCceEEEE
Confidence 9999998877666655543 588999999987 68999999999999988653 3455678999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee-----cCCcEEEEEEccCCCEEEEecCCCcEEEEEcC-CCceEEEEe
Q 005254 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-----HKRGIWSVEFSPVDQVVITASGDKTIKIWSIS-DGSCLKTFE 575 (706)
Q Consensus 502 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~ 575 (706)
|+|+|++|++|+.||+|++||+.... +..... +...+..++|+|+++.+.. ..+ +.+|+.. ++.++..+.
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~--~~~~~~~~~g~~~~~l~ 480 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRL-LHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSS--YEVYPLTVNDVSKAKID 480 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSST-TTCC------CCCCEEEECBCCSSSCEEEE-CCC--CCCCC------------
T ss_pred eCCCCCeEEEEECCCEEEEEechHhh-ccccccCccceeeeEEEEeccCCCCCeEEc-cCC--ceecccccCCcceeeec
Confidence 99999999999999999999986541 111111 1225789999999985533 222 3444433 577888899
Q ss_pred ecccCEEEEEEEeCCC---EEEEEeCCCCEEEEECC
Q 005254 576 GHTSSVLRASFLTRGA---QIVSCGADGLVKLWTVR 608 (706)
Q Consensus 576 ~~~~~i~~~~~s~~~~---~l~~~~~dg~i~iwd~~ 608 (706)
+|...|.+++|+|++. .||+|+.||.|+||++.
T Consensus 481 gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 481 AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp -CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred CCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 9999999999999964 99999999999999985
No 56
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2e-39 Score=313.26 Aligned_cols=248 Identities=24% Similarity=0.384 Sum_probs=217.6
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
.+.+|...|.++. +.|++.. +++++.|+.|++|+............+...+....+++++. ++++++.|+.+++||
T Consensus 81 ~l~~h~~~V~~~~--~s~dg~~-l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d 156 (340)
T 4aow_A 81 ALRGHSHFVSDVV--ISSDGQF-ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWN 156 (340)
T ss_dssp EECCCSSCEEEEE--ECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred EEeCCCCCEEEEE--ECCCCCE-EEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEE
Confidence 4567888888887 7888877 99999999999999999999999999999999999999977 899999999999999
Q ss_pred ecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC--CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCC
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 548 (706)
..... ........|...+..+++++++ .++++++.|+.|++||+.+++....+.+|...|++++|+|++
T Consensus 157 ~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~ 227 (340)
T 4aow_A 157 TLGVC---------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227 (340)
T ss_dssp TTSCE---------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred eCCCc---------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC
Confidence 86531 1233345678889999998865 578899999999999999999999999999999999999999
Q ss_pred CEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec---------cC
Q 005254 549 QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---------KH 619 (706)
Q Consensus 549 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~ 619 (706)
++|++++.||.|++||+.+.+++..+. +...+.++.|+|++.+ ++++.|+.|++||+.++..+..+. +|
T Consensus 228 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h 305 (340)
T 4aow_A 228 SLCASGGKDGQAMLWDLNEGKHLYTLD-GGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE 305 (340)
T ss_dssp SEEEEEETTCEEEEEETTTTEEEEEEE-CSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CC
T ss_pred CEEEEEeCCCeEEEEEeccCceeeeec-CCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCC
Confidence 999999999999999999999998887 4568999999998754 556679999999999988776654 68
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 620 EDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 620 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
...|++++|+||+++|++|+.||.|++||+.+|.
T Consensus 306 ~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 306 PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 8999999999999999999999999999999875
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.5e-39 Score=323.48 Aligned_cols=346 Identities=24% Similarity=0.409 Sum_probs=272.0
Q ss_pred EEEeecCCCccE-EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 52 IKSTIEGGSDTI-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 52 ~~~~l~~~~~~i-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
....+.+|...| +++.+ ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ +|++|+.|++|++||
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 456888998874 66666 57899999999999999999999999999999999999999988 999999999999999
Q ss_pred CCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC
Q 005254 131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK 210 (706)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 210 (706)
+++++.+..+.+|...|.+++|++..+..++++++.||.|++||+.++.......... ....+.+.+++...+..
T Consensus 190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 264 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH-DYPLVFHTPEENPYFVG---- 264 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------C-CSSEEESCGGGCTTEEE----
T ss_pred CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccC-CcceEeeccCCCeEEEE----
Confidence 9999999999999999999999975555679999999999999998876544332111 11112222222110000
Q ss_pred EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeec
Q 005254 211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290 (706)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 290 (706)
..
T Consensus 265 ---~~--------------------------------------------------------------------------- 266 (464)
T 3v7d_B 265 ---VL--------------------------------------------------------------------------- 266 (464)
T ss_dssp ---EE---------------------------------------------------------------------------
T ss_pred ---Ec---------------------------------------------------------------------------
Confidence 00
Q ss_pred cCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEE
Q 005254 291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA 370 (706)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 370 (706)
.++...+.++. +++.+++
T Consensus 267 -----------------------------------------------------------~~~~~~v~~~~---~~~~~l~ 284 (464)
T 3v7d_B 267 -----------------------------------------------------------RGHMASVRTVS---GHGNIVV 284 (464)
T ss_dssp -----------------------------------------------------------CCCSSCEEEEE---EETTEEE
T ss_pred -----------------------------------------------------------cCccceEEEEc---CCCCEEE
Confidence 00111111221 2456777
Q ss_pred EEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEe
Q 005254 371 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 450 (706)
Q Consensus 371 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 450 (706)
+++.++.|++||+.+++....+.+|...+.++. +.++++. +++++.||.|++||+.+++.+..+..|...|.+++++
T Consensus 285 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 361 (464)
T 3v7d_B 285 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI--YDHERKR-CISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS 361 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEE--EETTTTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEeCCCeEEEEECCCCcEEEEecCCCCCEEEEE--EcCCCCE-EEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc
Confidence 777888888888888888888888999999998 8888887 9999999999999999999999999999999999998
Q ss_pred cCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEE
Q 005254 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 530 (706)
Q Consensus 451 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 530 (706)
+. ++++++.||.|++||+.... ......+...+..++++|+++++++++ ||.|++||+.+++.+.
T Consensus 362 ~~---~l~s~s~dg~v~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 362 DK---FLVSAAADGSIRGWDANDYS-----------RKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp SS---EEEEEETTSEEEEEETTTCC-----------EEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred CC---EEEEEeCCCcEEEEECCCCc-----------eeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 53 89999999999999998642 223334677788899999999999998 8999999999999887
Q ss_pred E-EeecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 531 T-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 531 ~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
. +..|...|.+++|+ +..++++++.||.+.+|-
T Consensus 427 ~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 427 ANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp SCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred hhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 5 66789999999997 345566666777655543
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-42 Score=340.82 Aligned_cols=362 Identities=12% Similarity=0.100 Sum_probs=254.4
Q ss_pred CeEEEEeeccCCCeEEEEECCCC---------CEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEE
Q 005254 92 LKCLRSWKGHDGPAIGMACHPSG---------GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLF 162 (706)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 162 (706)
++....+. +.+.|.+|+|+|++ ++||+++.++.. -..+|+++. ++
T Consensus 124 ~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~--la 177 (524)
T 2j04_B 124 KRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEM--FD 177 (524)
T ss_dssp CSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------
T ss_pred CcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------Cccchhhhh--hc
Confidence 34444555 67899999999987 799998865420 012576665 89
Q ss_pred EEecCCeEEEEECCCCeeE----EEeecccceEEEEEEecC------CCEEEEEeCCCEEEEEeCCCCcceeeecCccee
Q 005254 163 SGSDDATVRVWDLLAKKCV----ATLDKHFSRVTSMAITSD------GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232 (706)
Q Consensus 163 ~~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~ 232 (706)
+++.|++|+|||+.+++.. ..+..|.+.|.+++|+|+ +.+|++++.||.|++||+.++.......
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~----- 252 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF----- 252 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-----
T ss_pred cCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-----
Confidence 9999999999999877642 345677889999999997 5799999999999999986542110000
Q ss_pred eeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEE
Q 005254 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV 312 (706)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (706)
T Consensus 253 -------------------------------------------------------------------------------- 252 (524)
T 2j04_B 253 -------------------------------------------------------------------------------- 252 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee
Q 005254 313 LPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL 392 (706)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~ 392 (706)
. ........+
T Consensus 253 --------------------------------------------------------------------~--~~~~p~~~l 262 (524)
T 2j04_B 253 --------------------------------------------------------------------K--MCEKPSLTL 262 (524)
T ss_dssp --------------------------------------------------------------------E--CCCSCSEEE
T ss_pred --------------------------------------------------------------------e--eecCceEEE
Confidence 0 000011245
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc-eEEEEEeCCCcCeEEE--EEecCCCeEEEEecCCCeEEEE
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVW 469 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~d~~i~i~ 469 (706)
.+|...+.+++ +.++ .. |++|+.||+|++||+.++ .....+..|...|.++ +|++++..+|++++.|++|++|
T Consensus 263 ~~h~~~v~sv~--~s~~-~~-lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklW 338 (524)
T 2j04_B 263 SLADSLITTFD--FLSP-TT-VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF 338 (524)
T ss_dssp CCTTTCEEEEE--ESSS-SE-EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEE
T ss_pred EcCCCCEEEEE--ecCC-Ce-EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEE
Confidence 56778888887 5554 34 999999999999999876 4456688999999999 5677763489999999999999
Q ss_pred EecCCCCCCCcccccceeEEEeecCc--ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccC
Q 005254 470 SFDGLSDDAEQPMNLKAKAVVAAHGK--DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV 547 (706)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 547 (706)
|++... ....+.+|.. .|.+++|+|+++.+++++.|++|++||++++..+..+.+|...|++++|+|+
T Consensus 339 D~~~~~----------~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~ 408 (524)
T 2j04_B 339 NPKDIA----------TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL 408 (524)
T ss_dssp CGGGHH----------HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred ECCCCC----------cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence 997542 2223344432 4789999999999999999999999999999888889999999999999999
Q ss_pred CCEEEEecCCCcEEEEEcCCCceEEEEee-----cccCEEEEEEEeCCCEEEEEeCCCCEEEEECC-CCeEEEEeccCCC
Q 005254 548 DQVVITASGDKTIKIWSISDGSCLKTFEG-----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVR-TGECIATYDKHED 621 (706)
Q Consensus 548 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~ 621 (706)
+++|++|+.||+|++||+... .+..+.. +...+..++|+|+++.+. ... .+.+|+.. ++.++..+.+|..
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~ 484 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGI 484 (524)
T ss_dssp CCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCC
T ss_pred CCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCc
Confidence 999999999999999998653 2222111 112577899999998553 222 23444443 5778888999999
Q ss_pred cEEEEEEcCCCC---EEEEEeCCCcEEEEECCch
Q 005254 622 KIWALAVGKKTE---MFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 622 ~v~~~~~s~~~~---~l~~~~~dg~i~vw~~~~~ 652 (706)
.|.+++|+|++. ++++|+.||.|+||++.-+
T Consensus 485 ~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 485 NITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp SCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred eEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 999999999965 9999999999999998754
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-41 Score=336.62 Aligned_cols=379 Identities=15% Similarity=0.256 Sum_probs=290.4
Q ss_pred EEccCCCEEEEEeccCeEEEEECCCCeEEEEe-eccCCCeEEEEECC-CCCEEEEecCCCcEEEEECCC---Ce---EEE
Q 005254 67 ALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHP-SGGLLATAGADRKVLVWDVDG---GF---CTH 138 (706)
Q Consensus 67 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~vw~~~~---~~---~~~ 138 (706)
.|+|+++.+++++ .|+ .+++++..+ .+|...|++++|+| ++++||+|+.|+.|++||+.+ +. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4678888888765 388 567888888 88999999999999 999999999999999999976 43 223
Q ss_pred EeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC---CCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEE
Q 005254 139 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL---AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215 (706)
Q Consensus 139 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 215 (706)
.+ .|...|.+++|+|+++. +++++.||.|++||++ +++....+..| .+..+.|++++ ..+..+.++
T Consensus 107 ~~-~h~~~v~~~~~~~~~~~--l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------~~~~~~~~~ 175 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFDA--FAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG------KNEYAVRMR 175 (437)
T ss_dssp EE-ECSSCEEEEEECTTSSE--EEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------SCCCEEEEE
T ss_pred ec-cCCCCEEEEEEeCCCCE--EEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc------cccCceEEE
Confidence 33 49999999999998776 9999999999999994 66666666555 66677766643 001111111
Q ss_pred eCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccc
Q 005254 216 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT 295 (706)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 295 (706)
.
T Consensus 176 ~------------------------------------------------------------------------------- 176 (437)
T 3gre_A 176 A------------------------------------------------------------------------------- 176 (437)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred E-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecC
Q 005254 296 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 375 (706)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 375 (706)
+..+++.++++++.+
T Consensus 177 -----------------------------------------------------------------~~~~~~~~l~~~~~d 191 (437)
T 3gre_A 177 -----------------------------------------------------------------FVNEEKSLLVALTNL 191 (437)
T ss_dssp -----------------------------------------------------------------EECSSCEEEEEEETT
T ss_pred -----------------------------------------------------------------EEcCCCCEEEEEeCC
Confidence 011256677788888
Q ss_pred CcEEEEeCCCceeeEeeeC--CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe-CCCcCeEEEEEec-
Q 005254 376 EQVQVYDLSSMSCSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSK- 451 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~- 451 (706)
+.|++||+.+++....+.. |...+.++. +.|++.. +++|+.||.|++||+.+++.+..+. .|...|.+++++|
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~--~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSIC--IDEECCV-LILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEE--ECTTSCE-EEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEE--ECCCCCE-EEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence 8888888888888888887 788999998 8888777 9999999999999999999998876 7888999996665
Q ss_pred ---CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE
Q 005254 452 ---KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 452 ---~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 528 (706)
++. ++++++.||.|++||+..+. ....+..|...+..+.|+|+++.+ .+..
T Consensus 269 ~s~~~~-~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l----~~~~----------- 322 (437)
T 3gre_A 269 YGKNSV-IVVGGSSKTFLTIWNFVKGH----------CQYAFINSDEQPSMEHFLPIEKGL----EELN----------- 322 (437)
T ss_dssp TCTTEE-EEEEESTTEEEEEEETTTTE----------EEEEEESSSSCCCGGGGSCBCSSG----GGCC-----------
T ss_pred cCCCcc-EEEEEcCCCcEEEEEcCCCc----------EEEEEEcCCCCCccceeccccccc----ccce-----------
Confidence 444 89999999999999998653 566777888888888999987665 1111
Q ss_pred EEEEee--cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc---cCEEEEEEEeCCCEEEEEeCCCCEE
Q 005254 529 VVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT---SSVLRASFLTRGAQIVSCGADGLVK 603 (706)
Q Consensus 529 ~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~~dg~i~ 603 (706)
+.+ |...|++++|+ ++++|++++.|+.|++||+.++++...+.+|. ..+....++++..+++..
T Consensus 323 ---~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 391 (437)
T 3gre_A 323 ---FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK------- 391 (437)
T ss_dssp ---CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE-------
T ss_pred ---ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe-------
Confidence 334 88999999999 78999999999999999999999999988764 345556666665555444
Q ss_pred EEECCCCeEEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 005254 604 LWTVRTGECIATYDKHEDKIWALAVGKK--TEMFATGGSDALVNLWH 648 (706)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vw~ 648 (706)
|+...+........|.+.|++++|+++ +.+|++++.||.|++|+
T Consensus 392 -~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 -MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred -cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 444445555666789999999999998 77999999999999995
No 60
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-38 Score=307.38 Aligned_cols=305 Identities=19% Similarity=0.246 Sum_probs=273.2
Q ss_pred eEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 343 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
......+.+|...|.+++|++ +++++++++.++.|++||+.+++....+.+|...+.++. +.++++. +++++.||.
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~s~~~dg~ 97 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSID--VDCFTKY-CVTGSADYS 97 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTTE
T ss_pred ccccEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEE--EcCCCCE-EEEEeCCCe
Confidence 345567788999999999998 788999999999999999999999999999999999998 8888777 899999999
Q ss_pred EEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC-----CeEEEEEecCCCCCCCcc-cccceeEEEeecCc-
Q 005254 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQP-MNLKAKAVVAAHGK- 495 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~- 495 (706)
|++||+.+++.+..+. +...+.+++|+|++. ++++++.+ +.|.+|++.......... ...........+..
T Consensus 98 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 98 IKLWDVSNGQCVATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EEEEETTTCCEEEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred EEEEECCCCcEEEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 9999999999988887 889999999999988 78888888 999999998764322111 11123334445555
Q ss_pred -ceEEEEEcCCCCEEEEeeCCCcEEEEeCCC-ccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 496 -DINSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 496 -~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
.+.+++|+|++++|++++.||.|++||+.+ .+....+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK 255 (369)
T ss_dssp CCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeee
Confidence 899999999999999999999999999998 788889999999999999999999999999999999999999999988
Q ss_pred EeecccCEEEEEEEeCCCEEEEEeCCC--------------CEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe
Q 005254 574 FEGHTSSVLRASFLTRGAQIVSCGADG--------------LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 574 ~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 639 (706)
+. +...+..++|+|+++++++++.++ .+++||+.+++++..+.+|...|++++|+|++++|++++
T Consensus 256 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 334 (369)
T 3zwl_B 256 YE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG 334 (369)
T ss_dssp EE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEc
Confidence 88 788999999999999999999988 899999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCchhH
Q 005254 640 SDALVNLWHDSTAAE 654 (706)
Q Consensus 640 ~dg~i~vw~~~~~~~ 654 (706)
.||.|++|++..+..
T Consensus 335 ~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 335 EDGFIRLHHFEKSYF 349 (369)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCeEEEEECccccc
Confidence 999999999988764
No 61
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.1e-39 Score=316.19 Aligned_cols=297 Identities=19% Similarity=0.244 Sum_probs=261.9
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce------eeEeeeCCcceEEEeeeeeecC----C---
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS------CSYVLAGHSEIVLCLDTCALSS----G--- 410 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~----~--- 410 (706)
.....+.+|...|.+++|.+ .++++++.+|.|++|++.+++ ....+.+|...|.++. +.++ +
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~g~~~ 81 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD--VLQAIERDAFEL 81 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEE--EEEEEETTTEEE
T ss_pred hhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEE--EecccccCCccc
Confidence 44566778999999999976 799999999999999999887 7788889999999998 7776 5
Q ss_pred CEEEEEeeCCCcEEEEeCCCceE-----EEEEeCC-----CcCeEEEEEe----cCCCeE-EEEecCCCeEEEEEecC--
Q 005254 411 KILIVTGSKDNSVRLWDSESRCC-----VGVGTGH-----MGAVGAVAFS----KKLQNF-LVSGSSDHTIKVWSFDG-- 473 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~d~~i~i~~~~~-- 473 (706)
.. +++++.||.|++||+.+++. +..+..| ...|.+++|+ |++. + +++++.||.|++||+..
T Consensus 82 ~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 82 CL-VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EE-EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESSS
T ss_pred cE-EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCccc
Confidence 55 99999999999999998876 7888888 5999999999 9987 6 99999999999999987
Q ss_pred ----CCCCCCcccccceeEEE-------eecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee---c---C
Q 005254 474 ----LSDDAEQPMNLKAKAVV-------AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---H---K 536 (706)
Q Consensus 474 ----~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~ 536 (706)
..... ......+ ..|...|.+++|+|++ ++++++.||.|++||+.+++.+..+.. | .
T Consensus 160 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~ 233 (397)
T 1sq9_A 160 DESNSLTLN-----WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS 233 (397)
T ss_dssp SHHHHTTTC-----CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred cccccceee-----ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccC
Confidence 32111 1111133 3478899999999999 999999999999999999999999998 9 9
Q ss_pred CcEEEEEEccCCCEEEEecCC---CcEEEEEcCCCceEEEEee-------------cccCEEEEEEEeCCCEEEEEeCCC
Q 005254 537 RGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEG-------------HTSSVLRASFLTRGAQIVSCGADG 600 (706)
Q Consensus 537 ~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~dg 600 (706)
..|.+++|+|++++|++++.| |.|++||+.+++.+..+.+ |...|.+++|+|++++|++++.||
T Consensus 234 ~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 313 (397)
T 1sq9_A 234 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 313 (397)
T ss_dssp CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence 999999999999999999999 9999999999999999998 999999999999999999999999
Q ss_pred CEEEEECCCCeEEEEec------cC---------------CCcEEEEEEcCCC----------CEEEEEeCCCcEEEEEC
Q 005254 601 LVKLWTVRTGECIATYD------KH---------------EDKIWALAVGKKT----------EMFATGGSDALVNLWHD 649 (706)
Q Consensus 601 ~i~iwd~~~~~~~~~~~------~~---------------~~~v~~~~~s~~~----------~~l~~~~~dg~i~vw~~ 649 (706)
.|++||+.+++++..+. .| ...|.+++|+|++ ++|++++.||.|++|++
T Consensus 314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 314 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred eEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 99999999999999999 88 9999999999998 79999999999999999
Q ss_pred Cchh
Q 005254 650 STAA 653 (706)
Q Consensus 650 ~~~~ 653 (706)
.+++
T Consensus 394 ~~g~ 397 (397)
T 1sq9_A 394 AGGK 397 (397)
T ss_dssp EC--
T ss_pred CCCC
Confidence 8763
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-38 Score=306.37 Aligned_cols=306 Identities=19% Similarity=0.250 Sum_probs=262.2
Q ss_pred eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
.....+.+|...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++. +++++.||.|++
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~~~dg~i~i 100 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKY--CVTGSADYSIKL 100 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE--EEEEETTTEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCE--EEEEeCCCeEEE
Confidence 345568899999999999999999999999999999999999999999999999999999998776 999999999999
Q ss_pred EECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC-----CEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccc
Q 005254 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD-----KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSF 247 (706)
Q Consensus 173 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (706)
||+.+++.+..+. +...+.+++|+|+++++++++.+ |.|++||+........+...
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~------------------ 161 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV------------------ 161 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE------------------
T ss_pred EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccc------------------
Confidence 9999999998887 88999999999999999999998 99999997654322111000
Q ss_pred cccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCc
Q 005254 248 LSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQ 327 (706)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 327 (706)
T Consensus 162 -------------------------------------------------------------------------------- 161 (369)
T 3zwl_B 162 -------------------------------------------------------------------------------- 161 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcc--eEEEeeee
Q 005254 328 LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE--IVLCLDTC 405 (706)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~i~~~~~~ 405 (706)
.......+..|.. .+.++.
T Consensus 162 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~-- 182 (369)
T 3zwl_B 162 ---------------------------------------------------------SEEPIHKIITHEGLDAATVAG-- 182 (369)
T ss_dssp ---------------------------------------------------------CSSCSEEEECCTTCCCEEEEE--
T ss_pred ---------------------------------------------------------ccceeeeccCCcCccceeEEE--
Confidence 0001112223333 666776
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCC-ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 484 (706)
+.++++. +++++.||.|++||+.+ .+.+..+..|...|.+++|+|++. +|++++.|+.|++||+....
T Consensus 183 ~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~--------- 251 (369)
T 3zwl_B 183 WSTKGKY-IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVSTLQ--------- 251 (369)
T ss_dssp ECGGGCE-EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCC---------
T ss_pred EcCCCCE-EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC-EEEEecCCceEEEEECCCCc---------
Confidence 7787777 89999999999999998 788889999999999999999987 89999999999999998653
Q ss_pred ceeEEEeecCcceEEEEEcCCCCEEEEeeCCC--------------cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCE
Q 005254 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR--------------TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV 550 (706)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 550 (706)
....+ .+...+.+++|+|+++++++++.++ .+++||+.+++.+..+.+|...|++++|+|++++
T Consensus 252 -~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 329 (369)
T 3zwl_B 252 -VLKKY-ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTS 329 (369)
T ss_dssp -EEEEE-ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred -eeeee-cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCE
Confidence 22333 3778899999999999999999988 8999999999999999999999999999999999
Q ss_pred EEEecCCCcEEEEEcCCCceE
Q 005254 551 VITASGDKTIKIWSISDGSCL 571 (706)
Q Consensus 551 l~~~~~dg~i~iwd~~~~~~~ 571 (706)
|++++.||.|++|+++++...
T Consensus 330 l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 330 YASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp EEEEETTSEEEEEEECHHHHT
T ss_pred EEEEcCCCeEEEEECccccch
Confidence 999999999999999765443
No 63
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.9e-38 Score=332.42 Aligned_cols=294 Identities=21% Similarity=0.321 Sum_probs=256.1
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc-----eeeEeeeCCcceEEEeeeeeecCCCEEEEEee
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-----SCSYVLAGHSEIVLCLDTCALSSGKILIVTGS 418 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 418 (706)
.....+.+|...|.++++.+++..++++++.|+.|++|++... .....+.+|...|.++. ++++++. +++|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~--~s~~g~~-l~sgs 449 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV--LSSDGQF-ALSGS 449 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEE--ECTTSSE-EEEEE
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEE--ECCCCCE-EEEEe
Confidence 3445678999999999999988899999999999999998753 44567899999999998 8888887 99999
Q ss_pred CCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 419 KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 419 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
.|+.|++||+.+++.+..+.+|...|.+++|+|+++ ++++++.|++|++||..... ..........|...|.
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~-------~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGEC-------KYTISEGGEGHRDWVS 521 (694)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCE-------EEEECSSTTSCSSCEE
T ss_pred CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCc-------ceeeccCCCCCCCcEE
Confidence 999999999999999999999999999999999987 89999999999999975421 0000011135778899
Q ss_pred EEEEcCCC--CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee
Q 005254 499 SLAVAPND--SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 576 (706)
Q Consensus 499 ~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 576 (706)
+++|+|++ ..+++++.|+.|++||+.+++....+.+|...|++++|+|++++|++++.||.|++||+.+++++..+.
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~- 600 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE- 600 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-
Confidence 99999987 689999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCC-------------------CcEEEEEEcCCCCEEEE
Q 005254 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE-------------------DKIWALAVGKKTEMFAT 637 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~v~~~~~s~~~~~l~~ 637 (706)
+...+.+++|+|++.+|++++ ++.|++||+.+++.+..+..+. ..+++++|+||+++|++
T Consensus 601 ~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s 679 (694)
T 3dm0_A 601 ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS 679 (694)
T ss_dssp CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEE
T ss_pred CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEE
Confidence 456899999999998888776 4569999999999888775332 13789999999999999
Q ss_pred EeCCCcEEEEECC
Q 005254 638 GGSDALVNLWHDS 650 (706)
Q Consensus 638 ~~~dg~i~vw~~~ 650 (706)
|+.||.|++|++.
T Consensus 680 gs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 680 GYTDGVIRVWGIG 692 (694)
T ss_dssp EETTSEEEEEEC-
T ss_pred EcCCCeEEEEecc
Confidence 9999999999985
No 64
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1e-38 Score=313.21 Aligned_cols=309 Identities=18% Similarity=0.186 Sum_probs=250.5
Q ss_pred EEEEccCCeEEEeecCCCccEEEEEEccCC-CEEEEEeccCeEEEEECCCCeEEEEee--ccCCCeEEEEECC-CCCEEE
Q 005254 43 NIVDLSNASIKSTIEGGSDTITALALSPDD-KLLFSSGHSREIRVWDLSTLKCLRSWK--GHDGPAIGMACHP-SGGLLA 118 (706)
Q Consensus 43 ~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~ 118 (706)
.+++..+.+....+.+|...|++++|+|++ ++||+|+.||.|++||+.+++....+. +|...|.+++|+| ++++|+
T Consensus 56 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 56 FIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred ccccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 344556677788999999999999999999 999999999999999999888777765 6999999999999 789999
Q ss_pred EecCCCcEEEEECCCCeEEEEeeCC---CCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEE
Q 005254 119 TAGADRKVLVWDVDGGFCTHYFKGH---KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 195 (706)
Q Consensus 119 ~~~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 195 (706)
+++.|+.|++||+.+ ..+..+..+ ...|.+++|+|+++. +++++.||.|++||+ +++.+..+..|...|.+++
T Consensus 136 s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~ 211 (383)
T 3ei3_B 136 VSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQM--LATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAE 211 (383)
T ss_dssp EEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTE--EEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred EEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCE--EEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence 999999999999996 445555444 488999999998876 999999999999999 6788889999999999999
Q ss_pred EecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCC
Q 005254 196 ITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 274 (706)
Q Consensus 196 ~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (706)
|+|+++ ++++++.|+.|++||+++.+...
T Consensus 212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------------------------------------------------- 241 (383)
T 3ei3_B 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKN-------------------------------------------------- 241 (383)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEGGGCCSTT--------------------------------------------------
T ss_pred ECCCCCCEEEEEeCCCEEEEEeCCCCCccc--------------------------------------------------
Confidence 999999 89999999999999986532100
Q ss_pred eEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCc
Q 005254 275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354 (706)
Q Consensus 275 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (706)
T Consensus 242 -------------------------------------------------------------------------------- 241 (383)
T 3ei3_B 242 -------------------------------------------------------------------------------- 241 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeec-CCCEEEEEeeCCCcEEEEeCCCceE
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS-SGKILIVTGSKDNSVRLWDSESRCC 433 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~ 433 (706)
.....+ +|...+.++. +.| ++.. +++++.|+.|++||+.+++.
T Consensus 242 --------------------------------~~~~~~-~~~~~v~~~~--~s~~~~~~-l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 242 --------------------------------SYIAEM-PHEKPVNAAY--FNPTDSTK-LLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp --------------------------------CEEEEE-ECSSCEEEEE--ECTTTSCE-EEEEESSSEEEEEETTBTTS
T ss_pred --------------------------------ceEEEe-cCCCceEEEE--EcCCCCCE-EEEEcCCCcEEEEECCCCcc
Confidence 000011 3555677776 777 6666 88999999999999988765
Q ss_pred EEEEeCCCcC-------eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 434 VGVGTGHMGA-------VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 434 ~~~~~~~~~~-------v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
...+..|... +. +.|+| ...+..++++|++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~-~~~~p------------------------------------------~~~~~~~~~s~dg 322 (383)
T 3ei3_B 286 PDQIIIHPHRQFQHLTPIK-ATWHP------------------------------------------MYDLIVAGRYPDD 322 (383)
T ss_dssp CSEEEECCBCCCTTSCCCC-CEECS------------------------------------------SSSEEEEECBCCT
T ss_pred ccccccccccccccccceE-EeccC------------------------------------------CCCceEEEecCCc
Confidence 5444433211 11 12222 2345678889999
Q ss_pred CEEEEeeCCCcEEEEeCCCccEEEEEee--cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC
Q 005254 507 SLVCTGSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 567 (706)
Q Consensus 507 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 567 (706)
++ +++.||.|++||+.+++.+..+.+ |...+..++|+|++++|++++ |+.|++||+++
T Consensus 323 ~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 323 QL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 88 899999999999999999999987 557788889999999999997 99999999864
No 65
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.4e-39 Score=317.78 Aligned_cols=364 Identities=18% Similarity=0.247 Sum_probs=260.1
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCCCeEEEEee-------------ccCCCeE
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTLKCLRSWK-------------GHDGPAI 106 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~v~ 106 (706)
.+++|++..++....+.+|...|++++|+| ++++||+++.||.|++||+.+++....+. +|...|.
T Consensus 24 ~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 103 (408)
T 4a11_B 24 TRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE 103 (408)
T ss_dssp HHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE
T ss_pred cceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE
Confidence 577888888888888999999999999999 99999999999999999999887665553 5999999
Q ss_pred EEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCC-ceEEEEEecCCeEEEEECCCCeeEEEe
Q 005254 107 GMACHP-SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTD-KSLLFSGSDDATVRVWDLLAKKCVATL 184 (706)
Q Consensus 107 ~~~~s~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~ 184 (706)
+++|+| ++.+|++++.|+.|++||+.+++....+. +...+.+++|+|.+. ..++++++.+|.|++||+.+++.+..+
T Consensus 104 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 182 (408)
T 4a11_B 104 TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL 182 (408)
T ss_dssp EEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE
T ss_pred EEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee
Confidence 999999 78899999999999999999999888877 888999999998653 335999999999999999999999999
Q ss_pred ecccceEEEEEEecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcccccc
Q 005254 185 DKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 263 (706)
Q Consensus 185 ~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (706)
..|...|.+++|+|+++ .+++++.||.|++||+++.......
T Consensus 183 ~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~------------------------------------- 225 (408)
T 4a11_B 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT------------------------------------- 225 (408)
T ss_dssp CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEE-------------------------------------
T ss_pred cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccc-------------------------------------
Confidence 99999999999999998 5889999999999998754311000
Q ss_pred ceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceee
Q 005254 264 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL 343 (706)
Q Consensus 264 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (706)
T Consensus 226 -------------------------------------------------------------------------------- 225 (408)
T 4a11_B 226 -------------------------------------------------------------------------------- 225 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
+..+.... .
T Consensus 226 ------------------------------------------------~~~~~~~~------~----------------- 234 (408)
T 4a11_B 226 ------------------------------------------------LDQHNGKK------S----------------- 234 (408)
T ss_dssp ------------------------------------------------CCTTTTCS------C-----------------
T ss_pred ------------------------------------------------cccccccc------c-----------------
Confidence 00000000 0
Q ss_pred EEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 424 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 424 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
.........|...|.+++|+|+++ ++++++.||.|++||+........... .........+......
T Consensus 235 -------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 301 (408)
T 4a11_B 235 -------QAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYG-----KVCNNSKKGLKFTVSC 301 (408)
T ss_dssp -------CCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCC-----CCCCCCSSCCCCEECC
T ss_pred -------eeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceeccc-----cccccccccceeEEec
Confidence 000011235778899999999987 899999999999999987642211100 0001111222223333
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEE
Q 005254 504 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR 583 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 583 (706)
..+..+++++.++.|++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||+.+++.+.....+...
T Consensus 302 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--- 378 (408)
T 4a11_B 302 GCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--- 378 (408)
T ss_dssp SSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------
T ss_pred CCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---
Confidence 44566777788999999999999999999999999999999999999999999999999999999887665433222
Q ss_pred EEEEe-CCCEEEEEeCCCCEEEEECCC
Q 005254 584 ASFLT-RGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 584 ~~~s~-~~~~l~~~~~dg~i~iwd~~~ 609 (706)
..+.+ ....+.+.+.++.+++|+...
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 379 SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ---------------------------
T ss_pred cccccccceeecccCccCceeecCCcc
Confidence 23333 333455677889999998653
No 66
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.2e-39 Score=312.38 Aligned_cols=325 Identities=20% Similarity=0.273 Sum_probs=251.9
Q ss_pred EeecCCCccEEEEEEccC----CCEEEEEeccCeEEEEECCCCeEEEEeec-----cCCCeEEEEECCC----CCEEEEe
Q 005254 54 STIEGGSDTITALALSPD----DKLLFSSGHSREIRVWDLSTLKCLRSWKG-----HDGPAIGMACHPS----GGLLATA 120 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~~----~~~l~~~ 120 (706)
....+|..+|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +++|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 445689999999999984 45566666677999999998887777764 5578999999999 6799999
Q ss_pred cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcC-CCCceEEEEEecCCeEEEEECCCCeeEEEe---ecccceEEEEEE
Q 005254 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP-DTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVTSMAI 196 (706)
Q Consensus 121 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~ 196 (706)
+.|+.|++||+.+++.+..+.+|...|.+++|+| ++.. +++++.||.|++||+++++.+..+ ..|...|.+++|
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNL--LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTE--EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCE--EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 9999999999999999999999999999999999 6665 999999999999999999999888 689999999999
Q ss_pred ecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeE
Q 005254 197 TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV 276 (706)
Q Consensus 197 ~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 276 (706)
+|++++|++++.||.|++||+++++....+.... .+.+++.
T Consensus 170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~---------------------------------- 210 (366)
T 3k26_A 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY-----DYNPNKT---------------------------------- 210 (366)
T ss_dssp CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHH-----TCCGGGC----------------------------------
T ss_pred CCCCCEEEEecCCCCEEEEECCCCccccccceeE-----EecCCCC----------------------------------
Confidence 9999999999999999999998766543332100 0000000
Q ss_pred EEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCcee
Q 005254 277 RMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEI 356 (706)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 356 (706)
T Consensus 211 -------------------------------------------------------------------------------- 210 (366)
T 3k26_A 211 -------------------------------------------------------------------------------- 210 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE
Q 005254 357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 436 (706)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 436 (706)
. +...... . .......
T Consensus 211 -------------------------------------------------------~-~~~~~~~----~----~~~~~~~ 226 (366)
T 3k26_A 211 -------------------------------------------------------N-RPFISQK----I----HFPDFST 226 (366)
T ss_dssp -------------------------------------------------------S-SCCCCEE----E----CCCSEEE
T ss_pred -------------------------------------------------------c-cccccee----e----ccCcccc
Confidence 0 0000000 0 0000112
Q ss_pred EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCc----ccccceeEEEeecCcceEEEEEcCC--CCEEE
Q 005254 437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ----PMNLKAKAVVAAHGKDINSLAVAPN--DSLVC 510 (706)
Q Consensus 437 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~ 510 (706)
...|...|.+++|+ ++ ++++++.|+.|++||+......... .........+..|...|.+++|+|+ +++|+
T Consensus 227 ~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 227 RDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp CSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred ccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence 23466777777777 23 7778888888888887665321111 1112345567778889999999999 99999
Q ss_pred EeeCCCcEEEEeCCCcc----EEEEEeec--CCcEEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 511 TGSQDRTACVWRLPDLV----SVVTFRGH--KRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 511 ~~~~dg~i~i~d~~~~~----~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
+++.||.|++||+.+++ ....+..| ...|++++|+|++++|++++.||.|++||+.
T Consensus 304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999999999875 45577777 7999999999999999999999999999985
No 67
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-37 Score=294.82 Aligned_cols=295 Identities=22% Similarity=0.315 Sum_probs=254.3
Q ss_pred CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEE
Q 005254 134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213 (706)
Q Consensus 134 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 213 (706)
.+....+.+|...|.+++| |+++. +++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~--l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSK--VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTE--EEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCE--EEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 3677889999999999999 87776 99999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCc
Q 005254 214 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 293 (706)
Q Consensus 214 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 293 (706)
+|++......
T Consensus 85 ~~~~~~~~~~---------------------------------------------------------------------- 94 (313)
T 3odt_A 85 GVPLFATSGE---------------------------------------------------------------------- 94 (313)
T ss_dssp EEETTCCTTS----------------------------------------------------------------------
T ss_pred EEEeeecCCC----------------------------------------------------------------------
Confidence 9998642210
Q ss_pred cccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEe
Q 005254 294 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373 (706)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 373 (706)
T Consensus 95 -------------------------------------------------------------------------------- 94 (313)
T 3odt_A 95 -------------------------------------------------------------------------------- 94 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC
Q 005254 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 374 ~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (706)
+....+.+|...+.++. + +++. +++++.|+.|++|| .++....+..|...+.++++.|..
T Consensus 95 -------------~~~~~~~~~~~~i~~~~--~--~~~~-l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 95 -------------DPLYTLIGHQGNVCSLS--F--QDGV-VISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp -------------CC-CEECCCSSCEEEEE--E--ETTE-EEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETT
T ss_pred -------------CcccchhhcccCEEEEE--e--cCCE-EEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCC
Confidence 11113445667777776 4 3444 89999999999999 777888888999999999999933
Q ss_pred CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee-cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEE
Q 005254 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 532 (706)
Q Consensus 454 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 532 (706)
..++++++.|+.|++||... ....... +...+.+++++|++. +++++.||.|++||+.+++.+..+
T Consensus 155 ~~~l~~~~~d~~i~i~d~~~------------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~ 221 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQNDK------------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY 221 (313)
T ss_dssp TTEEEEEETTSCEEEEETTE------------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEECCCCEEEEecCc------------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh
Confidence 44899999999999999432 3344444 889999999999998 999999999999999999999999
Q ss_pred eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE
Q 005254 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC 612 (706)
Q Consensus 533 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 612 (706)
.+|...|++++|+|++ .|++++.||.|++||+.+++++..+..|...|.+++|+|+++ +++++.||.|++||+.+++.
T Consensus 222 ~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 222 EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred hcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 9999999999999999 588999999999999999999999999999999999999998 66799999999999998876
Q ss_pred EEEe
Q 005254 613 IATY 616 (706)
Q Consensus 613 ~~~~ 616 (706)
+...
T Consensus 300 ~~~~ 303 (313)
T 3odt_A 300 ASED 303 (313)
T ss_dssp CC--
T ss_pred eehh
Confidence 5444
No 68
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.5e-37 Score=328.67 Aligned_cols=294 Identities=22% Similarity=0.377 Sum_probs=245.2
Q ss_pred eEEEEeeccCCCeEEEEECCCC-CEEEEecCCCcEEEEECCC-----CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec
Q 005254 93 KCLRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDVDG-----GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 166 (706)
+....+++|...|++++|+|++ ++|++|+.|++|++|++.+ +.....+.+|...|.+++|+|+++. +++|+.
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~--l~sgs~ 450 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF--ALSGSW 450 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSE--EEEEET
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCE--EEEEeC
Confidence 3455788999999999999875 7999999999999999975 3456778899999999999998876 999999
Q ss_pred CCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccc
Q 005254 167 DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDS 246 (706)
Q Consensus 167 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (706)
||.|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|++||.........
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~--------------------- 509 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI--------------------- 509 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE---------------------
T ss_pred CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceee---------------------
Confidence 99999999999999999999999999999999999999999999999999643210000
Q ss_pred ccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCC
Q 005254 247 FLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQ 326 (706)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (706)
T Consensus 510 -------------------------------------------------------------------------------- 509 (694)
T 3dm0_A 510 -------------------------------------------------------------------------------- 509 (694)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeee
Q 005254 327 QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 406 (706)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 406 (706)
.....+|...+.++. +
T Consensus 510 --------------------------------------------------------------~~~~~~h~~~v~~~~--~ 525 (694)
T 3dm0_A 510 --------------------------------------------------------------SEGGEGHRDWVSCVR--F 525 (694)
T ss_dssp --------------------------------------------------------------CSSTTSCSSCEEEEE--E
T ss_pred --------------------------------------------------------------ccCCCCCCCcEEEEE--E
Confidence 001124556667776 6
Q ss_pred ecCC-CEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 407 LSSG-KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 407 ~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
+|++ ...+++++.|+.|++||+.+++....+.+|.+.|++++|+|+++ ++++++.||.|++||+....
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~---------- 594 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGK---------- 594 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTTTE----------
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCc----------
Confidence 6654 23499999999999999999999999999999999999999987 89999999999999997652
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecC-------------------CcEEEEEEcc
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK-------------------RGIWSVEFSP 546 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------~~v~~~~~s~ 546 (706)
.. ....+...+.+++|+|++.++++++ ++.|++||+.+++.+..+..+. ..+++++|+|
T Consensus 595 ~~-~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp 672 (694)
T 3dm0_A 595 KL-YSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA 672 (694)
T ss_dssp EE-ECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT
T ss_pred eE-EEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC
Confidence 11 2223456799999999998888776 5569999999998887765321 1378999999
Q ss_pred CCCEEEEecCCCcEEEEEcC
Q 005254 547 VDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 547 ~~~~l~~~~~dg~i~iwd~~ 566 (706)
++++|++|+.||.|++||+.
T Consensus 673 dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 673 DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TSSEEEEEETTSEEEEEEC-
T ss_pred CCCEEEEEcCCCeEEEEecc
Confidence 99999999999999999985
No 69
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.3e-38 Score=308.58 Aligned_cols=303 Identities=15% Similarity=0.147 Sum_probs=253.3
Q ss_pred EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe------EEEEeeCCCCcEEEEEEcCC----C---CceE
Q 005254 94 CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF------CTHYFKGHKGVVSSILFHPD----T---DKSL 160 (706)
Q Consensus 94 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~~~ 160 (706)
....+.+|...|++++|+| ++|++++.||.|++||+.+++ .+..+.+|...|.+++|+|+ + +.
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~-- 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL-- 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE--
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE--
Confidence 4556788999999999999 799999999999999999988 78888899999999999998 6 54
Q ss_pred EEEEecCCeEEEEECCCCee-----EEEeecc-----cceEEEEEEe----cCCCE-EEEEeCCCEEEEEeCCC------
Q 005254 161 LFSGSDDATVRVWDLLAKKC-----VATLDKH-----FSRVTSMAIT----SDGST-LISAGRDKVVNLWDLRD------ 219 (706)
Q Consensus 161 l~~~~~dg~i~vwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~~w~~~~------ 219 (706)
+++++.||.|++||+.+++. ...+..| ...|.+++|+ |++++ |++++.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999998887 8888888 5999999999 99999 99999999999999865
Q ss_pred CcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccc
Q 005254 220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 299 (706)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 299 (706)
.+.+...+
T Consensus 164 ~~~~~~~~------------------------------------------------------------------------ 171 (397)
T 1sq9_A 164 SLTLNWSP------------------------------------------------------------------------ 171 (397)
T ss_dssp HTTTCCCC------------------------------------------------------------------------
T ss_pred cceeeccC------------------------------------------------------------------------
Confidence 22111000
Q ss_pred cCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEE
Q 005254 300 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379 (706)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 379 (706)
.. .+. +.
T Consensus 172 -----------------------------------------------------------------~~-~~~-~~------ 178 (397)
T 1sq9_A 172 -----------------------------------------------------------------TL-ELQ-GT------ 178 (397)
T ss_dssp -----------------------------------------------------------------EE-EEE-EE------
T ss_pred -----------------------------------------------------------------cc-eee-ee------
Confidence 00 000 00
Q ss_pred EEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC---C---CcCeEEEEEecCC
Q 005254 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG---H---MGAVGAVAFSKKL 453 (706)
Q Consensus 380 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~~~v~~~~~~~~~ 453 (706)
......|...+.++. +.+++ ++++++.||.|++||+.+++.+..+.. | ...+.+++|+|++
T Consensus 179 ---------~~~~~~~~~~i~~~~--~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~ 245 (397)
T 1sq9_A 179 ---------VESPMTPSQFATSVD--ISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 245 (397)
T ss_dssp ---------ECCSSSSCCCCCEEE--ECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred ---------eccccCCCCCceEEE--ECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC
Confidence 001134566677776 77777 599999999999999999999999998 8 9999999999998
Q ss_pred CeEEEEecCC---CeEEEEEecCCCCCCCcccccceeEEEee-------------cCcceEEEEEcCCCCEEEEeeCCCc
Q 005254 454 QNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVAA-------------HGKDINSLAVAPNDSLVCTGSQDRT 517 (706)
Q Consensus 454 ~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~dg~ 517 (706)
. +|++++.| +.|++||+.... ....+.. |...|.+++|+|++++|++++.||.
T Consensus 246 ~-~l~~~~~d~~~g~i~i~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 314 (397)
T 1sq9_A 246 S-LLAIAHDSNSFGCITLYETEFGE----------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 314 (397)
T ss_dssp T-EEEEEEEETTEEEEEEEETTTCC----------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred C-EEEEEecCCCCceEEEEECCCCc----------ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe
Confidence 7 89999999 999999998653 4455555 8899999999999999999999999
Q ss_pred EEEEeCCCccEEEEEe------ec---------------CCcEEEEEEccCC----------CEEEEecCCCcEEEEEcC
Q 005254 518 ACVWRLPDLVSVVTFR------GH---------------KRGIWSVEFSPVD----------QVVITASGDKTIKIWSIS 566 (706)
Q Consensus 518 i~i~d~~~~~~~~~~~------~~---------------~~~v~~~~~s~~~----------~~l~~~~~dg~i~iwd~~ 566 (706)
|++||+.+++.+..+. +| ...|.+++|+|++ ++|++++.||.|++||+.
T Consensus 315 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 315 LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred EEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 9999999999999999 88 9999999999998 799999999999999998
Q ss_pred CCc
Q 005254 567 DGS 569 (706)
Q Consensus 567 ~~~ 569 (706)
+++
T Consensus 395 ~g~ 397 (397)
T 1sq9_A 395 GGK 397 (397)
T ss_dssp C--
T ss_pred CCC
Confidence 763
No 70
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.7e-37 Score=304.54 Aligned_cols=289 Identities=15% Similarity=0.186 Sum_probs=248.2
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee--CCcceEEEeeeeeecCCCEEEEEeeCCC
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDN 421 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~l~~~~~dg 421 (706)
.....+.+|...|.+++|.+.+..++++++.++.|++||+.+++....+. +|...|.++. +.|++..++++++.|+
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMK--FNQFNTNQLFVSSIRG 141 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEE--EETTEEEEEEEEETTT
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEE--eCCCCCCEEEEEeCCC
Confidence 34456778999999999999666999999999999999999887776665 6999999998 8885555699999999
Q ss_pred cEEEEeCCCceEEEEEeC---CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 422 SVRLWDSESRCCVGVGTG---HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
.|++||+.+ ..+..+.. +...|.+++|+|+++ ++++++.|+.|++||++.. ....+..|...|.
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-----------~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDGH-----------EIFKEKLHKAKVT 208 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTSC-----------EEEEEECSSSCEE
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCCC-----------EEEEeccCCCcEE
Confidence 999999996 44444443 347899999999987 8999999999999998532 5666778999999
Q ss_pred EEEEcCCCC-EEEEeeCCCcEEEEeCCC----ccEEEEEeecCCcEEEEEEcc-CCCEEEEecCCCcEEEEEcCCCceEE
Q 005254 499 SLAVAPNDS-LVCTGSQDRTACVWRLPD----LVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDGSCLK 572 (706)
Q Consensus 499 ~~~~s~~~~-~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 572 (706)
+++|+|+++ ++++++.|+.|++||+.+ +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+.+++...
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 999999999 999999999999999987 5566666 6999999999999 99999999999999999999988877
Q ss_pred EEeecc-----------------cCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc--CCCcEEEEEEcCCCC
Q 005254 573 TFEGHT-----------------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK--HEDKIWALAVGKKTE 633 (706)
Q Consensus 573 ~~~~~~-----------------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~ 633 (706)
.+.+|. ..+..++|+|++++ +++.||.|++||+.+++++..+.+ |...+..++|+|+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~ 365 (383)
T 3ei3_B 288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD 365 (383)
T ss_dssp EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSS
T ss_pred ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCcc
Confidence 776553 34555777777776 778999999999999999999986 567788889999999
Q ss_pred EEEEEeCCCcEEEEECCc
Q 005254 634 MFATGGSDALVNLWHDST 651 (706)
Q Consensus 634 ~l~~~~~dg~i~vw~~~~ 651 (706)
+|++++ ||.|++|++++
T Consensus 366 ~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 366 VLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEEE-TTEEEEEECC-
T ss_pred EEEEec-CCcEEEEecCC
Confidence 999997 99999999975
No 71
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.3e-38 Score=305.76 Aligned_cols=303 Identities=17% Similarity=0.208 Sum_probs=240.5
Q ss_pred EeecCCCccEEEEEEccCCCEEE-EEec---cCeEEEEECCCCeEEEEe-eccCCCeEEEEECCC---CCEEEEecCCCc
Q 005254 54 STIEGGSDTITALALSPDDKLLF-SSGH---SREIRVWDLSTLKCLRSW-KGHDGPAIGMACHPS---GGLLATAGADRK 125 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~-s~~~---d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~---~~~l~~~~~d~~ 125 (706)
+.+.+|...|.+++|+|++..++ +++. |+.|++||+.+++..... .+|...|.+++|+|+ +++|++++.|+.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 55678999999999999996554 5555 899999999998876543 369999999999999 699999999999
Q ss_pred EEEEECCCCe-EEEEeeCCCCcEEEEEE------cCCCCceEEEEEecCCeEEEEECCCCe-eEEEeecccc----eEEE
Q 005254 126 VLVWDVDGGF-CTHYFKGHKGVVSSILF------HPDTDKSLLFSGSDDATVRVWDLLAKK-CVATLDKHFS----RVTS 193 (706)
Q Consensus 126 i~vw~~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~----~v~~ 193 (706)
|++||+.+++ .+..+.+|...|.+++| +|+++. +++++.||.|++||+.+++ .+..+..|.+ .+.+
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE--IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCE--EEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccE--EEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 9999999988 88889999999999965 566665 9999999999999999887 6777766554 7888
Q ss_pred EE----EecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEE
Q 005254 194 MA----ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 269 (706)
Q Consensus 194 ~~----~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (706)
++ |+|+++++++++.||.|++||+++++...
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------------------------------------------- 204 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW--------------------------------------------- 204 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE---------------------------------------------
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECccCceee---------------------------------------------
Confidence 88 67899999999999999999987543211
Q ss_pred ecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEe
Q 005254 270 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL 349 (706)
Q Consensus 270 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (706)
T Consensus 205 -------------------------------------------------------------------------------- 204 (357)
T 3i2n_A 205 -------------------------------------------------------------------------------- 204 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeec---CCCEEEEEeeCCCcEEEE
Q 005254 350 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS---SGKILIVTGSKDNSVRLW 426 (706)
Q Consensus 350 ~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~l~~~~~dg~i~i~ 426 (706)
...|...+.++. +.| ++.. +++++.||.|++|
T Consensus 205 ------------------------------------------~~~~~~~v~~~~--~~~~~~~~~~-l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 205 ------------------------------------------ETNIKNGVCSLE--FDRKDISMNK-LVATSLEGKFHVF 239 (357)
T ss_dssp ------------------------------------------EEECSSCEEEEE--ESCSSSSCCE-EEEEESTTEEEEE
T ss_pred ------------------------------------------ecCCCCceEEEE--cCCCCCCCCE-EEEECCCCeEEEE
Confidence 112333445554 555 5555 8888889999999
Q ss_pred eCCCceEEEEE-----eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCc---------ccccceeEEEee
Q 005254 427 DSESRCCVGVG-----TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ---------PMNLKAKAVVAA 492 (706)
Q Consensus 427 d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~---------~~~~~~~~~~~~ 492 (706)
|+.+++....+ ..|...|.+++|+|+++.++++++.||.|++||+......... .........+..
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (357)
T 3i2n_A 240 DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL 319 (357)
T ss_dssp EEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred eCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence 98876654444 3899999999999998778999999999999999865432111 011235667788
Q ss_pred cCcceEEEEEcCCCCEEE-EeeCCCcEEEEeCCCccE
Q 005254 493 HGKDINSLAVAPNDSLVC-TGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~ 528 (706)
|...|++++|+|++++|+ +++.||.|++||+.+.+.
T Consensus 320 ~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 320 STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 999999999999999998 799999999999987654
No 72
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.6e-37 Score=303.18 Aligned_cols=302 Identities=24% Similarity=0.364 Sum_probs=240.7
Q ss_pred cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee--ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Q 005254 62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK--GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY 139 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 139 (706)
.++.|+||+++ +||+|. |++|+|||..+++.+..+. +|...|++++|+|+|++||+|+.|+.|++||+++++.+..
T Consensus 107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 46789999864 777765 8999999999999887665 5778899999999999999999999999999999999999
Q ss_pred eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC-eeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCC
Q 005254 140 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 218 (706)
Q Consensus 140 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 218 (706)
+.+|...+.++++++ . ++++|+.|+.+++||.... ..+..+.+|...+..+.++|+++++++++.|+.+++|+..
T Consensus 185 ~~~h~~~v~~~s~~~--~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 185 MTSHSARVGSLSWNS--Y--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp ECCCSSCEEEEEEET--T--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred EeCCCCceEEEeeCC--C--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence 999999999998864 4 4999999999999998764 4567788999999999999999999999999999999976
Q ss_pred CCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcccccc
Q 005254 219 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 298 (706)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 298 (706)
+++....
T Consensus 261 ~~~~~~~------------------------------------------------------------------------- 267 (420)
T 4gga_A 261 PGEGGWV------------------------------------------------------------------------- 267 (420)
T ss_dssp CCSSCSC-------------------------------------------------------------------------
T ss_pred cccccce-------------------------------------------------------------------------
Confidence 4321000
Q ss_pred ccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcE
Q 005254 299 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 378 (706)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 378 (706)
T Consensus 268 -------------------------------------------------------------------------------- 267 (420)
T 4gga_A 268 -------------------------------------------------------------------------------- 267 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEE
Q 005254 379 QVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 458 (706)
Q Consensus 379 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 458 (706)
.+.....|...|.+++|+|.+..+++
T Consensus 268 ------------------------------------------------------~~~~~~~~~~~V~~~~~~p~~~~~la 293 (420)
T 4gga_A 268 ------------------------------------------------------PLQTFTQHQGAVKAVAWCPWQSNVLA 293 (420)
T ss_dssp ------------------------------------------------------CSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred ------------------------------------------------------eeeeecccCCceeeeeeCCCcccEEE
Confidence 00112335567778888887776766
Q ss_pred E--ecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee--CCCcEEEEeCCCccEEEEEee
Q 005254 459 S--GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSVVTFRG 534 (706)
Q Consensus 459 ~--~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~ 534 (706)
+ |+.|++|++||+..+ .......+...+.++.|+|+++.+++++ .|+.|++||+.+++++..+.+
T Consensus 294 ~~~gs~D~~I~iwd~~t~-----------~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g 362 (420)
T 4gga_A 294 TGGGTSDRHIRIWNVCSG-----------ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 362 (420)
T ss_dssp EEECTTTCEEEEEETTTT-----------EEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC
T ss_pred EEeecCCCEEEEEeCCcc-----------ccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC
Confidence 5 457999999999865 2233334567799999999999988765 789999999999999999999
Q ss_pred cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 535 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
|...|++++|+|+|++|++|+.|++|++||+....+.+..+.+...+....|.
T Consensus 363 H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~ 415 (420)
T 4gga_A 363 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLI 415 (420)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------------
T ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccccC
Confidence 99999999999999999999999999999998777666665555544444443
No 73
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=316.56 Aligned_cols=356 Identities=17% Similarity=0.258 Sum_probs=250.3
Q ss_pred CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcC-CCCceEEEEEecCCeEEEEECCCCeeEEEee-------------ccc
Q 005254 123 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP-DTDKSLLFSGSDDATVRVWDLLAKKCVATLD-------------KHF 188 (706)
Q Consensus 123 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------~~~ 188 (706)
++.+++|+++.++....+.+|.+.|.+++|+| +++. +++++.||.|++||+.+++....+. +|.
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRY--MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCE--EEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCE--EEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 45678888888888888899999999999999 8776 9999999999999998876554442 589
Q ss_pred ceEEEEEEec-CCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEE
Q 005254 189 SRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 267 (706)
Q Consensus 189 ~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (706)
..|.+++|+| ++.+|++++.||.|++||+.+++....+..
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------------------------- 140 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF--------------------------------------- 140 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC---------------------------------------
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC---------------------------------------
Confidence 9999999999 778999999999999999876553332211
Q ss_pred EEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEee
Q 005254 268 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 347 (706)
Q Consensus 268 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (706)
T Consensus 141 -------------------------------------------------------------------------------- 140 (408)
T 4a11_B 141 -------------------------------------------------------------------------------- 140 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
...+.++.+.....+..++++++.++.|++||
T Consensus 141 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 141 ------------------------------------------------EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp ------------------------------------------------SSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred ------------------------------------------------CCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 11122222111112223489999999999999
Q ss_pred CCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcc------cccceeEEEeecCcceEEEE
Q 005254 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP------MNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~ 501 (706)
+.+++.+..+..|...|.+++|+|+++.++++++.||.|++||++......... ...........|...|.+++
T Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 173 LKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp SSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred CCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 999999999999999999999999998779999999999999997653211100 00111122256888999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeec-----CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee
Q 005254 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH-----KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 576 (706)
Q Consensus 502 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 576 (706)
|+|++++|++++.||.|++||+.+++....+..+ ...+........+..+++++.|+.|++||+.+++++..+.+
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 332 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG 332 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc
Confidence 9999999999999999999999988765544332 12222223333456677778899999999999999999999
Q ss_pred cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 005254 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-KTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~ 650 (706)
|...|++++|+|++++|++++.||.|++||+.+++++.....+... ..+.+ +...+.+.+.|+.+++|+..
T Consensus 333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCc
Confidence 9999999999999999999999999999999999887766543322 22333 33345567789999999865
No 74
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-39 Score=313.59 Aligned_cols=310 Identities=14% Similarity=0.117 Sum_probs=244.6
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee-c
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK-G 100 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~ 100 (706)
.+++|||||+++|+++.+ +|+ |.+.++ .+++|...|.+++|+|+| .++.+.+|+ ++....+. .
T Consensus 19 ~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~~~~~~~ 83 (588)
T 2j04_A 19 NNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFEL---AQQNGLLNSQ 83 (588)
T ss_dssp CCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSC---CCSSCSSTTS
T ss_pred EEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEe---CCCceEeecC
Confidence 389999999999999988 676 755554 458999999999999999 455555554 33222333 4
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCC-----cEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG-----VVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
|...|.+++|||||++||+++.||.|++||.++ ++..+. |.. .|.+++|+|||+. |++|+.||+|++||+
T Consensus 84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~--LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESS--IVVGNEDGELQFFSI 158 (588)
T ss_dssp CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSC--EEEEETTSEEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCE--EEEEcCCCEEEEEEC
Confidence 688999999999999999999999999999654 666667 665 4999999999988 999999999999999
Q ss_pred CCCee-------EEEe----ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCc
Q 005254 176 LAKKC-------VATL----DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAF 244 (706)
Q Consensus 176 ~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (706)
.+++. +.++ .+|...|.+++|+|+| +++++.|+.|++|++.+.....
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~-------------------- 216 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP-------------------- 216 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC--------------------
T ss_pred CCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc--------------------
Confidence 88753 5666 6677899999999999 8888999999999986543110
Q ss_pred ccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEee
Q 005254 245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA 324 (706)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 324 (706)
T Consensus 217 -------------------------------------------------------------------------------- 216 (588)
T 2j04_A 217 -------------------------------------------------------------------------------- 216 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee-eCCcceEEEee
Q 005254 325 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLD 403 (706)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~i~~~~ 403 (706)
....+ .+|...|.+++
T Consensus 217 ---------------------------------------------------------------~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 217 ---------------------------------------------------------------VSRMIQNASRRKITDLK 233 (588)
T ss_dssp ---------------------------------------------------------------CEEEEECCCSSCCCCEE
T ss_pred ---------------------------------------------------------------ceeeecccccCcEEEEE
Confidence 00012 13445555565
Q ss_pred eeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEE--ecCCCeEEEEecCCCeEEEEEecCCCCCCCcc
Q 005254 404 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF--SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481 (706)
Q Consensus 404 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 481 (706)
++ +.. +++++ ++.|++||..+++......+|...+..++| +|++. .+++++.+|+ ++|..+
T Consensus 234 --Fs--g~~-LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~-~La~a~edG~-klw~~d--------- 296 (588)
T 2j04_A 234 --IV--DYK-VVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKEST-ILLMSNKTSY-KVLLED--------- 296 (588)
T ss_dssp --EE--TTE-EEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCE-EEEECSSCEE-EEEESS---------
T ss_pred --EE--CCE-EEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCC-EEEEEcCCCC-EEEeec---------
Confidence 44 444 77776 689999999988885555589999999999 99986 8999999999 999864
Q ss_pred cccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec
Q 005254 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555 (706)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 555 (706)
.++++||+..+++. |+++++|+...+. ...+.+ ...|.+++|||||+.+|+++
T Consensus 297 -----------------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 -----------------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp -----------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred -----------------cEEECCCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 15699999888875 8999999975444 334443 66799999999999999875
No 75
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-39 Score=313.90 Aligned_cols=322 Identities=11% Similarity=0.043 Sum_probs=253.7
Q ss_pred CCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Q 005254 58 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT 137 (706)
Q Consensus 58 ~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~ 137 (706)
.-...|.+++|||||+++|+++.|++|+ |.+.++ .+++|...|.+++|+|+| .++.+.+|+.+... .
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~ 79 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-L 79 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-S
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce-E
Confidence 3457899999999999999999999999 755554 447999999999999999 45655555543222 2
Q ss_pred EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccc-----eEEEEEEecCCCEEEEEeCCCEE
Q 005254 138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS-----RVTSMAITSDGSTLISAGRDKVV 212 (706)
Q Consensus 138 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i 212 (706)
..+ .|...|.+++|+|+|+. +++++.||.|++||.++ ++..+. |.. .+.+++|+|||++|++++.||+|
T Consensus 80 ~~~-~~~~~V~~vawSPdG~~--LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 80 LNS-QPVCYPRVCKPSPIDDW--MAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp STT-SCSCCEEEEEECSSSSC--EEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred eec-CCCCcEEEEEECCCCCE--EEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 222 46889999999999988 99999999999999644 666666 665 49999999999999999999999
Q ss_pred EEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccC
Q 005254 213 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292 (706)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 292 (706)
++||+.++.....
T Consensus 154 kIWd~~~~~l~~~------------------------------------------------------------------- 166 (588)
T 2j04_A 154 QFFSIRKNSENTP------------------------------------------------------------------- 166 (588)
T ss_dssp EEEECCCCTTTCC-------------------------------------------------------------------
T ss_pred EEEECCCCccccc-------------------------------------------------------------------
Confidence 9999876431000
Q ss_pred ccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEE
Q 005254 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372 (706)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 372 (706)
.+
T Consensus 167 --------------------------------------------------------------------------~~---- 168 (588)
T 2j04_A 167 --------------------------------------------------------------------------EF---- 168 (588)
T ss_dssp --------------------------------------------------------------------------CC----
T ss_pred --------------------------------------------------------------------------cc----
Confidence 00
Q ss_pred ecCCcEEEEeCCCceeeEe----eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE---EEEE-eCCCcCe
Q 005254 373 TNIEQVQVYDLSSMSCSYV----LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC---VGVG-TGHMGAV 444 (706)
Q Consensus 373 ~~~~~i~~~d~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~-~~~~~~v 444 (706)
-.... ..+|...|.+++ ++|++ +++++.|+.+++||+.++.. ...+ .+|...|
T Consensus 169 --------------i~l~ti~~~~~gh~~~V~sVa--wSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 169 --------------YFESSIRLSDAGSKDWVTHIV--WYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI 229 (588)
T ss_dssp --------------EEEEEEECSCTTCCCCEEEEE--EETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred --------------eeeeeeecccccccccEEEEE--EcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence 00001 244667788887 77877 67788899999999988773 3455 4788999
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccccee-EEEeecCcceEEEEE--cCCCCEEEEeeCCCcEEEE
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK-AVVAAHGKDINSLAV--APNDSLVCTGSQDRTACVW 521 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~i~ 521 (706)
.+++|+ ++ .+++++ +++|++||+... .. ....+|...+..++| +|++..++++++||+ ++|
T Consensus 230 ~svaFs--g~-~LASa~-~~tIkLWd~~~~-----------~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw 293 (588)
T 2j04_A 230 TDLKIV--DY-KVVLTC-PGYVHKIDLKNY-----------SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVL 293 (588)
T ss_dssp CCEEEE--TT-EEEEEC-SSEEEEEETTTT-----------EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred EEEEEE--CC-EEEEEe-CCeEEEEECCCC-----------eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence 999999 44 788877 699999998865 33 333389999999999 999999999999999 999
Q ss_pred eCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeC
Q 005254 522 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 522 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 598 (706)
... .++++||+..+++. |+++++|+...+ .+..+.+ ...|.+++|||||+.+|+++.
T Consensus 294 ~~d----------------~~~~spd~~l~a~~--d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 294 LED----------------ELHVTADNIIAPYL--EKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ESS----------------SEEEECCCSSHHHH--HHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred eec----------------cEEECCCceEEEEc--CCEEEEEECCCC-ceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 976 26699999888775 999999997544 3445554 667999999999999998864
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-37 Score=301.60 Aligned_cols=292 Identities=24% Similarity=0.357 Sum_probs=239.2
Q ss_pred ecCCCcc--EEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec-cCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 56 IEGGSDT--ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 56 l~~~~~~--i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
..+|... +.+++|+ +..+++++.|+.|++||+.+++....+.. |...|.+++|+|++++|++++.||.|++||+.
T Consensus 87 ~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 87 APGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 3456554 4445665 45688888999999999999998888776 78999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC-CCeeEEEeecccceEEEEEEecCCCEEEEEeCCCE
Q 005254 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV 211 (706)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 211 (706)
+++.+..+.+|...|.+++|++ + ++++++.||.|++||++ .+..+..+.+|.+.|.+++|+|++++|++++.||.
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~~--~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSWNR--H--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEEET--T--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCeEEEEecCCCCceEEEEECC--C--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence 9999999999999999999954 4 49999999999999998 56677888889999999999999999999988888
Q ss_pred EEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeecc
Q 005254 212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 291 (706)
Q Consensus 212 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 291 (706)
|++||+++++
T Consensus 241 v~iwd~~~~~---------------------------------------------------------------------- 250 (401)
T 4aez_A 241 VQIWDARSSI---------------------------------------------------------------------- 250 (401)
T ss_dssp EEEEETTCSS----------------------------------------------------------------------
T ss_pred EEEccCCCCC----------------------------------------------------------------------
Confidence 8888865311
Q ss_pred CccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEE
Q 005254 292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371 (706)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 371 (706)
T Consensus 251 -------------------------------------------------------------------------------- 250 (401)
T 4aez_A 251 -------------------------------------------------------------------------------- 250 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEec
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 451 (706)
.+..+..|...|.+++|+|
T Consensus 251 -------------------------------------------------------------~~~~~~~~~~~v~~~~~~p 269 (401)
T 4aez_A 251 -------------------------------------------------------------PKFTKTNHNAAVKAVAWCP 269 (401)
T ss_dssp -------------------------------------------------------------EEEEECCCSSCCCEEEECT
T ss_pred -------------------------------------------------------------ccEEecCCcceEEEEEECC
Confidence 1112334667788899999
Q ss_pred CCCeEEEEec--CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE--eeCCCcEEEEeCCCcc
Q 005254 452 KLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT--GSQDRTACVWRLPDLV 527 (706)
Q Consensus 452 ~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~i~d~~~~~ 527 (706)
++..++++++ .|+.|++||+.... ....+ .+...+.+++|+|+++++++ |+.||.|++||+.+++
T Consensus 270 ~~~~ll~~~~gs~d~~i~i~d~~~~~----------~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 270 WQSNLLATGGGTMDKQIHFWNAATGA----------RVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338 (401)
T ss_dssp TSTTEEEEECCTTTCEEEEEETTTCC----------EEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCC----------EEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc
Confidence 8877888865 89999999998653 23333 46778999999999999999 4489999999999865
Q ss_pred EEE--EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEe
Q 005254 528 SVV--TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE 575 (706)
Q Consensus 528 ~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 575 (706)
... .+.+|...|.+++|+|++++|++++.||.|++||+.+++.+....
T Consensus 339 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 339 LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 444 467899999999999999999999999999999999988766543
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.3e-37 Score=301.88 Aligned_cols=293 Identities=20% Similarity=0.207 Sum_probs=254.5
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce--eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 428 (706)
.+..+|.+++|.+ +++++++++.++.|++||+.+++ ....+.+|...+.++. +.|+++. +++++.||.|++||+
T Consensus 6 ~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVD--WAPDSNR-IVTCGTDRNAYVWTL 81 (372)
T ss_dssp SCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEE--EETTTTE-EEEEETTSCEEEEEE
T ss_pred ccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEE--EeCCCCE-EEEEcCCCeEEEEEC
Confidence 4678899999987 77899999999999999999987 8888999999999998 8888877 899999999999999
Q ss_pred CCceEEEE--EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 429 ESRCCVGV--GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 429 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
.+++.... +..|...|.+++|+|+++ ++++++.|+.|++|++...... .........|...|.+++|+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDW------WVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTE------EEEEEECTTCCSCEEEEEECTTS
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcc------eeeeeeecccCCCeeEEEEcCCC
Confidence 98875544 367889999999999987 8999999999999999865310 01122335678899999999999
Q ss_pred CEEEEeeCCCcEEEEeC------------------CCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 507 SLVCTGSQDRTACVWRL------------------PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 507 ~~l~~~~~dg~i~i~d~------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
++|++++.||.|++||+ ..++.+..+..|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999999999995 467888889899999999999999999999999999999999999
Q ss_pred ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC--CeE--------------------------------E-
Q 005254 569 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT--GEC--------------------------------I- 613 (706)
Q Consensus 569 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~--------------------------------~- 613 (706)
+++..+..|..++.+++|+|++++|+++ .|+.|++|++.+ ++. .
T Consensus 235 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (372)
T 1k8k_C 235 MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 313 (372)
T ss_dssp TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccccc
Confidence 9999999999999999999999988887 899999999987 431 0
Q ss_pred -----EEe-ccCCCcEEEEEEc-CCC---CEEEEEeCCCcEEEEECCchhHH
Q 005254 614 -----ATY-DKHEDKIWALAVG-KKT---EMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 614 -----~~~-~~~~~~v~~~~~s-~~~---~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
..+ .+|.+.|++++|. ++| ++|++++.||.|++|++.+++..
T Consensus 314 ~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 314 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred CccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 233 3899999999966 666 99999999999999999776543
No 78
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1e-37 Score=305.51 Aligned_cols=317 Identities=15% Similarity=0.190 Sum_probs=253.4
Q ss_pred ecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe--EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 005254 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK--CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG 133 (706)
Q Consensus 56 l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 133 (706)
+..|..+|++++|+|++++||+++.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45689999999999999999999999999999999988 8899999999999999999999999999999999999998
Q ss_pred CeEEEE--eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee---E-EEeecccceEEEEEEecCCCEEEEEe
Q 005254 134 GFCTHY--FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC---V-ATLDKHFSRVTSMAITSDGSTLISAG 207 (706)
Q Consensus 134 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~-~~~~~~~~~v~~~~~~~~~~~l~~~~ 207 (706)
++.... +..|...|.+++|+|+++. +++++.||.|++||+..++. . .....|...|.+++|+|++++|++++
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKK--FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSE--EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCE--EEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 875544 3679999999999998876 99999999999999988763 2 33366889999999999999999999
Q ss_pred CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEE
Q 005254 208 RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 208 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
.||.|++||+........... ..
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~-------------~~-------------------------------------------- 184 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAP-------------TP-------------------------------------------- 184 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCC-------------BT--------------------------------------------
T ss_pred CCCCEEEEEcccccccccccc-------------cc--------------------------------------------
Confidence 999999999864321100000 00
Q ss_pred eeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCc
Q 005254 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367 (706)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 367 (706)
.
T Consensus 185 -----------------------------------------------------------------------------~-- 185 (372)
T 1k8k_C 185 -----------------------------------------------------------------------------W-- 185 (372)
T ss_dssp -----------------------------------------------------------------------------T--
T ss_pred -----------------------------------------------------------------------------c--
Confidence 0
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
+ .....++....+..|...+.++. +.|++.. +++++.|+.|++||+.+++.+..+..|...+.++
T Consensus 186 --------~----~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~ 250 (372)
T 1k8k_C 186 --------G----SKMPFGELMFESSSSCGWVHGVC--FSANGSR-VAWVSHDSTVCLADADKKMAVATLASETLPLLAV 250 (372)
T ss_dssp --------B----SCCCTTCEEEECCCCSSCEEEEE--ECSSSSE-EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE
T ss_pred --------c----cccchhhheEecCCCCCeEEEEE--ECCCCCE-EEEEeCCCEEEEEECCCCceeEEEccCCCCeEEE
Confidence 0 00112334445567788888887 7788776 9999999999999999999999999999999999
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecC--CCCCCCc----------------------ccccce-------eEEEeecCcc
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDG--LSDDAEQ----------------------PMNLKA-------KAVVAAHGKD 496 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~--~~~~~~~----------------------~~~~~~-------~~~~~~~~~~ 496 (706)
+|+|++. +++++ .|+.|++|++.. +.-.... ...... .....+|...
T Consensus 251 ~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 328 (372)
T 1k8k_C 251 TFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS 328 (372)
T ss_dssp EEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred EEecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC
Confidence 9999986 66666 999999999987 2100000 000000 1122478999
Q ss_pred eEEEEEc-CCC---CEEEEeeCCCcEEEEeCCCcc
Q 005254 497 INSLAVA-PND---SLVCTGSQDRTACVWRLPDLV 527 (706)
Q Consensus 497 i~~~~~s-~~~---~~l~~~~~dg~i~i~d~~~~~ 527 (706)
|+++++. ++| .+|++++.||.|++||+.+++
T Consensus 329 v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 329 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 9999965 677 999999999999999987653
No 79
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=290.42 Aligned_cols=289 Identities=24% Similarity=0.351 Sum_probs=258.4
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
.....+.+|...|.+++| + ++.++++++.+|.|++||+.++.....+..|...+.++. +.|++.. +++++.||.+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~dg~i 83 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVC--YDSEKEL-LLFGGKDTMI 83 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEE--EETTTTE-EEEEETTSCE
T ss_pred HHHHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEE--ECCCCCE-EEEecCCCeE
Confidence 455677889999999999 4 778899999999999999999999999999999999998 8888887 9999999999
Q ss_pred EEEeCCCc---eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEE
Q 005254 424 RLWDSESR---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 500 (706)
Q Consensus 424 ~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 500 (706)
++|++... +.+..+..|...|.+++|.+ . ++++++.|+.|++||.. ........|...+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~d~~i~~~d~~------------~~~~~~~~~~~~v~~~ 148 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQD--G-VVISGSWDKTAKVWKEG------------SLVYNLQAHNASVWDA 148 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETT------------EEEEEEECCSSCEEEE
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEecC--C-EEEEEeCCCCEEEEcCC------------cEEEecccCCCceeEE
Confidence 99998654 56777889999999999943 3 89999999999999921 1556677899999999
Q ss_pred EEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEee-cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc
Q 005254 501 AVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578 (706)
Q Consensus 501 ~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 578 (706)
++.| +++++++++.||.|++|| ..+....+.. |...+.+++|+|++. +++++.||.|++||+.+++++..+.+|.
T Consensus 149 ~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 225 (313)
T 3odt_A 149 KVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE 225 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC
Confidence 9988 999999999999999999 5566777777 999999999999998 9999999999999999999999999999
Q ss_pred cCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHH
Q 005254 579 SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREE 657 (706)
Q Consensus 579 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 657 (706)
..|++++|+|++ .|++++.||.|++||+.+++++..+..|...|.+++|+|+++ +++++.||.|++|++.++.....
T Consensus 226 ~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 226 SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 999999999999 699999999999999999999999999999999999999998 66799999999999998765443
No 80
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.9e-37 Score=299.16 Aligned_cols=231 Identities=13% Similarity=0.094 Sum_probs=182.5
Q ss_pred EEEeeCCCcEEEEeCCCceEE----EEE-----eCCCcCeEEEEEecCCCeEE-EEecCCCeEEEEEecCCCCCCCcccc
Q 005254 414 IVTGSKDNSVRLWDSESRCCV----GVG-----TGHMGAVGAVAFSKKLQNFL-VSGSSDHTIKVWSFDGLSDDAEQPMN 483 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~----~~~-----~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~ 483 (706)
+++++.|+.+++|++...... ... ..+...+.+++|+|||+.++ ++++.|++|++||+....
T Consensus 97 l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~-------- 168 (365)
T 4h5i_A 97 ITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT-------- 168 (365)
T ss_dssp HHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE--------
T ss_pred EEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc--------
Confidence 344455666666665433211 111 12345688999999998442 355679999999998652
Q ss_pred cceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecCCC---
Q 005254 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGDK--- 558 (706)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg--- 558 (706)
.... ..|...|.+++|+|||+++++++.+ .+.+|+..+++.... ...|...|.+++|+|+++++++++.|+
T Consensus 169 --~~~~-~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 169 --EKFE-IETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG 244 (365)
T ss_dssp --EEEE-EECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred --EEEE-eCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence 2233 3577889999999999999999855 567777777766543 345888999999999999999999887
Q ss_pred -cEEEEEcCCCce----EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEe-ccCCCcEEEEEEcCCC
Q 005254 559 -TIKIWSISDGSC----LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKT 632 (706)
Q Consensus 559 -~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~ 632 (706)
.+++|++..... ...+.+|...|++++|+|||++||+|+.|+.|+|||+.+++++..+ .+|...|++++|||||
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg 324 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS 324 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence 688999877654 3567789999999999999999999999999999999999999885 6999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCchhHHH
Q 005254 633 EMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 633 ~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
++|++++.|++|+||+++......
T Consensus 325 ~~laS~S~D~tvrvw~ip~~~~~~ 348 (365)
T 4h5i_A 325 TYVASVSAANTIHIIKLPLNYANY 348 (365)
T ss_dssp CEEEEEETTSEEEEEECCTTTTC-
T ss_pred CEEEEEeCCCeEEEEEcCCCCcCc
Confidence 999999999999999997665443
No 81
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-37 Score=304.70 Aligned_cols=289 Identities=15% Similarity=0.240 Sum_probs=248.4
Q ss_pred EecccCceeeEeeEeCC---CCcEEEEEecCCcEEEEeCCCceeeEeeeC-----CcceEEEeeeeeecCC---CEEEEE
Q 005254 348 RLVGYNEEILDLKFLGE---EEQYLAVATNIEQVQVYDLSSMSCSYVLAG-----HSEIVLCLDTCALSSG---KILIVT 416 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~---~~~l~~ 416 (706)
...+|...|.+++|.|. ....+++++.++.|++||+.+++....+.. |...+.++. +.++. ..++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA--WTYDSNTSHPLLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEE--EEECTTTCCEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEE--eccCCCCCCCEEEE
Confidence 44578999999999984 566677777778999999998877666554 557799998 66663 345999
Q ss_pred eeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEec-CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE---ee
Q 005254 417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV---AA 492 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~---~~ 492 (706)
++.||.|++||+.+++.+..+..|...|.+++|+| ++. ++++++.||.|++||+.... ....+ ..
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~ 159 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDT----------LVAIFGGVEG 159 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTE----------EEEEECSTTS
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCe----------EEEEeccccc
Confidence 99999999999999999999999999999999999 555 99999999999999997652 33444 57
Q ss_pred cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe----------------------------ecCCcEEEEEE
Q 005254 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR----------------------------GHKRGIWSVEF 544 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------~~~~~v~~~~~ 544 (706)
|...|.+++|+|++++|++++.||.|++||+.+++....+. .|...|.+++|
T Consensus 160 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 160 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 89999999999999999999999999999998775443333 39999999999
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCCce--------------EEEEeecccCEEEEEEEeC--CCEEEEEeCCCCEEEEECC
Q 005254 545 SPVDQVVITASGDKTIKIWSISDGSC--------------LKTFEGHTSSVLRASFLTR--GAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 545 s~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~ 608 (706)
+ +++|++++.|+.|++||+.+++. +..+..|...|++++|+|+ +++|++++.||.|++||+.
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 9 77999999999999999987744 7888889999999999999 9999999999999999999
Q ss_pred CCe----EEEEeccC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 609 TGE----CIATYDKH--EDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 609 ~~~----~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
+++ ....+..| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 318 VEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 875 44577777 79999999999999999999999999999863
No 82
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.4e-35 Score=327.23 Aligned_cols=481 Identities=10% Similarity=0.006 Sum_probs=346.4
Q ss_pred ceEEcCCCCEEEEeeC-----C--eEEEEEccCCeEEEeecCCCccE-------EEEEEccCCCEEEEEecc------Ce
Q 005254 24 PLVVSSDGSFIACACG-----E--SINIVDLSNASIKSTIEGGSDTI-------TALALSPDDKLLFSSGHS------RE 83 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~-----~--~i~i~d~~~~~~~~~l~~~~~~i-------~~l~~s~~~~~l~s~~~d------~~ 83 (706)
+++|||||++||+++. + .|++||+.+++ ...+..|...+ .+++|||||+++++++.+ ..
T Consensus 57 ~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~ 135 (1045)
T 1k32_A 57 NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTC 135 (1045)
T ss_dssp EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCE
T ss_pred CeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccce
Confidence 7999999999998853 2 79999998887 46788899888 999999999977777644 46
Q ss_pred EEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecC------------CCcEEEEECCCCeEEEEeeCCCCcEEEEE
Q 005254 84 IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA------------DRKVLVWDVDGGFCTHYFKGHKGVVSSIL 151 (706)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~ 151 (706)
|.+||+.+++...... + ....++|+| | ++++++. +....+|....+.....+.+|...+.++.
T Consensus 136 l~~~~~~~g~~~~l~~-~--~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~ 210 (1045)
T 1k32_A 136 LYRVENDGINFVPLNL-G--PATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPV 210 (1045)
T ss_dssp EEEEEGGGTEEEECCS-C--SCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEE
T ss_pred EEEEECCCCCeEEecC-C--CcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceE
Confidence 8888888877644333 3 234677999 8 8888642 23456665433344555688999999999
Q ss_pred EcCCCCceEEEEEecCCeEEEEECCC-CeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcc
Q 005254 152 FHPDTDKSLLFSGSDDATVRVWDLLA-KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 230 (706)
|+++ .++++++.++.+.+|.+.. +.....+..|. .+...+|+|||+.|+.+ .++.|.+|++.... +..+....
T Consensus 211 ~s~d---~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~ 284 (1045)
T 1k32_A 211 IVGH---RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGD 284 (1045)
T ss_dssp EETT---EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCC
T ss_pred EeCC---EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCc
Confidence 9986 3577788889999998653 44455565554 45677999999988887 48999999984332 22222110
Q ss_pred eeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEE
Q 005254 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAA 310 (706)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (706)
... ... ...+...+..+
T Consensus 285 ~~~-------~~~--------------------------------------------------------~~~~~~~v~~~ 301 (1045)
T 1k32_A 285 LES-------PED--------------------------------------------------------RIISIPSKFAE 301 (1045)
T ss_dssp CCB-------CCS--------------------------------------------------------EEEECGGGGEE
T ss_pred ccc-------ccc--------------------------------------------------------cccccccccee
Confidence 000 000 00011234566
Q ss_pred EEc-cCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCc-eeeEeeEeCCCCcEEEEEecCCcEE-EEeCCCce
Q 005254 311 TVL-PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE-EILDLKFLGEEEQYLAVATNIEQVQ-VYDLSSMS 387 (706)
Q Consensus 311 ~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~~~~i~-~~d~~~~~ 387 (706)
.++ |+++.++... ++.+.+|+...... ..+..+.. .+..+.|+ +++.++.++.++.+. +|++.+++
T Consensus 302 ~~S~pdG~~la~~~-~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 302 DFSPLDGDLIAFVS-RGQAFIQDVSGTYV--------LKVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGK 370 (1045)
T ss_dssp EEEECGGGCEEEEE-TTEEEEECTTSSBE--------EECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCC
T ss_pred eecCCCCCEEEEEE-cCEEEEEcCCCCce--------EEccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCC
Confidence 677 7777666665 66677666543211 12334445 67788887 777788877788888 89998876
Q ss_pred eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC----
Q 005254 388 CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---- 463 (706)
Q Consensus 388 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---- 463 (706)
..... ++...+..+. ++|+++. +++++.++.+++||+.+++.......|...+..++|+|+|+ +|++++.+
T Consensus 371 ~~~l~-~~~~~~~~~~--~SpDG~~-la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~-~la~~~~~~~~~ 445 (1045)
T 1k32_A 371 AEKFE-ENLGNVFAMG--VDRNGKF-AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR-FIAYGFPLKHGE 445 (1045)
T ss_dssp EEECC-CCCCSEEEEE--ECTTSSE-EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC-EEEEEEEECSST
T ss_pred ceEec-CCccceeeeE--ECCCCCE-EEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCC-eEEEEecCcccc
Confidence 55444 7777888887 8899988 88889999999999999998888878999999999999998 56655543
Q ss_pred ------CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc----------
Q 005254 464 ------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV---------- 527 (706)
Q Consensus 464 ------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---------- 527 (706)
+.|++||+..+ ....+..+...+..++|+|||++|++++.++...+|+.....
T Consensus 446 ~~~~~~~~i~l~d~~~g-----------~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGR-----------KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF 514 (1045)
T ss_dssp TCSCCEEEEEEEETTTT-----------EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEE
T ss_pred ccCCCCCeEEEEECCCC-----------cEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeE
Confidence 48999998764 334455667778899999999999999987776666543221
Q ss_pred ---------------------------------EEEEEeecCCcEEEEEEccCCCEEEE-------------ecCCCcEE
Q 005254 528 ---------------------------------SVVTFRGHKRGIWSVEFSPVDQVVIT-------------ASGDKTIK 561 (706)
Q Consensus 528 ---------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~-------------~~~dg~i~ 561 (706)
.+..+..|...+..++++||++++++ ......|.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~ 594 (1045)
T 1k32_A 515 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLL 594 (1045)
T ss_dssp EEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEE
T ss_pred EEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEE
Confidence 12233446677899999999987875 12345788
Q ss_pred EEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe
Q 005254 562 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611 (706)
Q Consensus 562 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 611 (706)
+||+.+++... +. ..+..++|||||++|++++.+ .|++||+.+++
T Consensus 595 ~~d~~~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 595 KYDVKTRKVTE-VK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEETTTCCEEE-EE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred EEECCCCcEEE-ee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 99998877533 32 567889999999999998876 79999998765
No 83
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=300.30 Aligned_cols=294 Identities=17% Similarity=0.278 Sum_probs=246.9
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEec---CCcEEEEeCCCceeeEe-eeCCcceEEEeeeeeecCC--CEEEEEeeCC
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATN---IEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSG--KILIVTGSKD 420 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~---~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~--~~~l~~~~~d 420 (706)
....+|...|.+++|+|.+..++++++. ++.|++||+.+++.... ..+|...+.++. +.|+. ..++++++.|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGT--FGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEE--CTTCCTTTCCEEEEETT
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEE--EcCCCCCCceEEEecCC
Confidence 3446689999999999977778888876 89999999998876544 337888999998 77773 3349999999
Q ss_pred CcEEEEeCCCce-EEEEEeCCCcCeEEEEE------ecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec
Q 005254 421 NSVRLWDSESRC-CVGVGTGHMGAVGAVAF------SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493 (706)
Q Consensus 421 g~i~i~d~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (706)
|.|++||+.+++ .+..+..|...|.++.| +|+++ +|++++.|+.|++||+..... ....+..+
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~---------~~~~~~~~ 159 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDD---------PVANMEPV 159 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSS---------CSEEECCC
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCC---------cceecccc
Confidence 999999999988 88889999999999965 56766 899999999999999986531 22233333
Q ss_pred C----cceEEEE----EcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEcc---CCCEEEEecCCCcEEE
Q 005254 494 G----KDINSLA----VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP---VDQVVITASGDKTIKI 562 (706)
Q Consensus 494 ~----~~i~~~~----~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i 562 (706)
. ..+.+++ |+|+++++++++.||.|++||+.+++.... ..|...|.+++|+| ++.+|++++.||.|++
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 3 3788888 788999999999999999999999887544 66899999999999 9999999999999999
Q ss_pred EEcCCCceEEEEe-----ecccCEEEEEEEeCCC-EEEEEeCCCCEEEEECCCC-------------------eEEEEec
Q 005254 563 WSISDGSCLKTFE-----GHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTG-------------------ECIATYD 617 (706)
Q Consensus 563 wd~~~~~~~~~~~-----~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~ 617 (706)
||+.+++....+. +|...|++++|+|+++ +|++++.||.|++||+.++ +++..+.
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (357)
T 3i2n_A 239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT 318 (357)
T ss_dssp EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE
T ss_pred EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc
Confidence 9998876654444 8999999999999998 8999999999999999754 4677888
Q ss_pred cCCCcEEEEEEcCCCCEEE-EEeCCCcEEEEECCchh
Q 005254 618 KHEDKIWALAVGKKTEMFA-TGGSDALVNLWHDSTAA 653 (706)
Q Consensus 618 ~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vw~~~~~~ 653 (706)
+|...|++++|+|++++|+ +++.||.|++|++.+..
T Consensus 319 ~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 319 LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999999999999999998 89999999999998754
No 84
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-39 Score=315.61 Aligned_cols=347 Identities=10% Similarity=0.076 Sum_probs=238.1
Q ss_pred ecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC--eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 005254 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL--KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG 133 (706)
Q Consensus 56 l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 133 (706)
+..+..+|++++|+|++++||+++.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3446789999999999999999999999999999998 78889999999999999999999999999999999999998
Q ss_pred Ce---EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe---eEEEeec-ccceEEEEEEecCCCEEEEE
Q 005254 134 GF---CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---CVATLDK-HFSRVTSMAITSDGSTLISA 206 (706)
Q Consensus 134 ~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 206 (706)
++ ....+.+|...|.+++|+|+++. +++++.|+.|++||+++++ ....+.. |...|.+++|+|++++|+++
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDK--FAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSC--CEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCceeeeeEecccCCceEEEEECCCCCE--EEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 87 66777889999999999998877 9999999999999999887 4677777 99999999999999999999
Q ss_pred eCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeE
Q 005254 207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286 (706)
Q Consensus 207 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 286 (706)
+.|+.|++||+...+........ +.
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~---------~~---------------------------------------------- 189 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEAS---------VW---------------------------------------------- 189 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSC---------SS----------------------------------------------
T ss_pred eCCCEEEEEEEEecccCCCcccc---------cc----------------------------------------------
Confidence 99999999998654321110000 00
Q ss_pred EeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCC
Q 005254 287 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 366 (706)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 366 (706)
..
T Consensus 190 ------------------------------------------------------------------------------~~ 191 (377)
T 3dwl_C 190 ------------------------------------------------------------------------------GS 191 (377)
T ss_dssp ------------------------------------------------------------------------------CS
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE----EEEEeCCCc
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC----VGVGTGHMG 442 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~ 442 (706)
.+..++....+ +|...+.++. ++|+++. +++++.||.|++||+.+++. +..+..|..
T Consensus 192 ---------------~~~~~~~~~~~-~~~~~v~~~~--~sp~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 252 (377)
T 3dwl_C 192 ---------------RLPFNTVCAEY-PSGGWVHAVG--FSPSGNA-LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL 252 (377)
T ss_dssp ---------------CCCEEEEEECC-CCSSSEEEEE--ECTTSSC-EEEEETTTEEC-CEECSTTSCEEECCCEECSSS
T ss_pred ---------------ccchhhhhhcc-cCCceEEEEE--ECCCCCE-EEEEeCCCcEEEEECCCCCCcceeeEeecCCCC
Confidence 00112223344 7788888888 8888887 99999999999999999877 777889999
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE-------eecCcceEEEEEcCCCCEEEEeeCC
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-------AAHGKDINSLAVAPNDSLVCTGSQD 515 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~d 515 (706)
.|.+++|+|+++ +|++++.++.+ +|+.................... ........++.|++....+......
T Consensus 253 ~v~~~~~s~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (377)
T 3dwl_C 253 PLRSLLWANESA-IVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLK 330 (377)
T ss_dssp CEEEEEEEETTE-EEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------
T ss_pred ceEEEEEcCCCC-EEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhc
Confidence 999999999987 77887766655 77665322111000000000000 0000113333333332222222111
Q ss_pred CcEEEEeCCCccEEEEEeecCCcEEEEEEccCC-C---EEEEecCCCcEEEEEc
Q 005254 516 RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD-Q---VVITASGDKTIKIWSI 565 (706)
Q Consensus 516 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~---~l~~~~~dg~i~iwd~ 565 (706)
|... ........|...|+++++.+.. . .|++++.||.|++||+
T Consensus 331 g~~~-------~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 331 GSSQ-------SISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccc-------cccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 1111 1111223599999999976643 3 6999999999999985
No 85
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.2e-38 Score=311.02 Aligned_cols=308 Identities=18% Similarity=0.220 Sum_probs=234.4
Q ss_pred EEEeecCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCCCeE--EEEeeccCCCeEEEEECC-CCCEEEEecCCCcEE
Q 005254 52 IKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTLKC--LRSWKGHDGPAIGMACHP-SGGLLATAGADRKVL 127 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~ 127 (706)
......+|...|+||+|+| ++++||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+| ++.+|++++.|++|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 3455667889999999999 567999999999999999987754 445678999999999998 789999999999999
Q ss_pred EEECCCCeEEEEeeC--CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCC-EEE
Q 005254 128 VWDVDGGFCTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS-TLI 204 (706)
Q Consensus 128 vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~ 204 (706)
+||++++........ +...+.+++|+|++.. +++|+.||.|++||++ ++.+..+.+|...|.+++|+|++. +++
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRM--VVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTE--EEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCE--EEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEE
Confidence 999987765444333 3456789999998876 9999999999999985 566778889999999999999886 677
Q ss_pred EEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 205 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
+++.|+.|++||+++.+....+
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~---------------------------------------------------------- 289 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASF---------------------------------------------------------- 289 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCC----------------------------------------------------------
T ss_pred EecCcceeeEEecccccccceE----------------------------------------------------------
Confidence 8999999999998754322110
Q ss_pred eEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC
Q 005254 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 364 (706)
T Consensus 290 -------------------------------------------------------------------------------- 289 (435)
T 4e54_B 290 -------------------------------------------------------------------------------- 289 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcC-
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA- 443 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~- 443 (706)
....+|...|.++. ++|++.. |++++.||.|++||+.++.....+..|...
T Consensus 290 -------------------------~~~~~h~~~v~~~~--~spdg~~-l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 290 -------------------------LYSLPHRHPVNAAC--FSPDGAR-LLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp -------------------------SBCCBCSSCEEECC--BCTTSSE-EEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred -------------------------EEeeecccccccee--ECCCCCe-eEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 01234666777776 7788777 899999999999999988776665544321
Q ss_pred -----eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CCCc
Q 005254 444 -----VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRT 517 (706)
Q Consensus 444 -----v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~ 517 (706)
+....|+|++ .+..+.+++++..+++++ .++.
T Consensus 342 ~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~d~~~~~~~~~~~~~ 379 (435)
T 4e54_B 342 FQHLTPIKAAWHPRY------------------------------------------NLIVVGRYPDPNFKSCTPYELRT 379 (435)
T ss_dssp CSSSCCCBCEECSSS------------------------------------------SCEEEECCCCTTSCCSSTTCCCC
T ss_pred cccceeEEEEEcCCC------------------------------------------CEEEEEEcCCCCeEEEEecCCCE
Confidence 1112222222 233444555665555444 4567
Q ss_pred EEEEeCCCccEEEEEe-ecCCcEEEE-EEccCCCEEEEecCCCcEEEEEcCCCceE
Q 005254 518 ACVWRLPDLVSVVTFR-GHKRGIWSV-EFSPVDQVVITASGDKTIKIWSISDGSCL 571 (706)
Q Consensus 518 i~i~d~~~~~~~~~~~-~~~~~v~~~-~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 571 (706)
|++||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+|||+++++..
T Consensus 380 i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 380 IDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 9999999999988875 578888887 6999999999876 789999999988754
No 86
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.6e-36 Score=296.54 Aligned_cols=280 Identities=21% Similarity=0.364 Sum_probs=244.1
Q ss_pred eEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee--CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEE
Q 005254 357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 434 (706)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 434 (706)
..+.|++ .++|+++. |+.|++||..+++....+. +|...|++++ ++|+++. |++|+.||.|++||+.+++.+
T Consensus 109 ~~l~wS~--~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~--fspdg~~-lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 109 NLVDWSS--GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVA--WIKEGNY-LAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp BCEEECT--TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTTEEE
T ss_pred eeEEECC--CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEE--ECCCCCE-EEEEECCCeEEEEEcCCCcEE
Confidence 3466764 35777776 7999999999998876655 6777899998 8898887 999999999999999999999
Q ss_pred EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC
Q 005254 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514 (706)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 514 (706)
..+.+|...+.++++++. ++++++.|+.+++|+..... .....+..|...+..+.++|+++++++++.
T Consensus 183 ~~~~~h~~~v~~~s~~~~---~l~sgs~d~~i~~~d~~~~~---------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~ 250 (420)
T 4gga_A 183 RNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAPDGRHLASGGN 250 (420)
T ss_dssp EEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEeCCCCceEEEeeCCC---EEEEEeCCCceeEeeecccc---------eeeEEecccccceeeeeecCCCCeeeeeec
Confidence 999999999999988754 89999999999999987542 245667889999999999999999999999
Q ss_pred CCcEEEEeCCCcc----EEEEEeecCCcEEEEEEccCCC-EEEE--ecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 515 DRTACVWRLPDLV----SVVTFRGHKRGIWSVEFSPVDQ-VVIT--ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 515 dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~-~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
|+.+++|+..+++ .+.....|...|.+++|+|++. .+++ |+.|++|++||+.++++...+.. ...+.++.|+
T Consensus 251 D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~ 329 (420)
T 4gga_A 251 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWS 329 (420)
T ss_dssp TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEE
T ss_pred cccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-ccceeeeeec
Confidence 9999999998764 3566778999999999999664 4544 46799999999999999988874 4678999999
Q ss_pred eCCCEEEEEe--CCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 588 TRGAQIVSCG--ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 588 ~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
++++.+++++ .|+.|+|||+.+++++..+.+|.+.|++++|+|||++|+||+.||+|++||+.+..+.
T Consensus 330 ~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 330 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred CCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 9999998765 7899999999999999999999999999999999999999999999999999765443
No 87
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.1e-36 Score=283.83 Aligned_cols=249 Identities=23% Similarity=0.371 Sum_probs=215.3
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC--ceEEEEEeCCCcCeEEEEEecC--CCeEEEEecCCCeE
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--RCCVGVGTGHMGAVGAVAFSKK--LQNFLVSGSSDHTI 466 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i 466 (706)
.+.+|...|.+++ ++++++. |++|+.|+.|++||+.. .+.+..+.+|...|.+++|+++ +. +|++++.|++|
T Consensus 4 ~~~~h~~~V~~~~--~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~-~l~s~s~D~~v 79 (297)
T 2pm7_B 4 IANAHNEMIHDAV--MDYYGKR-MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKV 79 (297)
T ss_dssp ECCSCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTTEE
T ss_pred eccCCcCceEEEE--ECCCCCE-EEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCC-EEEEEcCCCEE
Confidence 5678999999998 8888887 99999999999999974 4677889999999999999864 44 89999999999
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCcc--EEEEEeecCCcEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKRGIWSV 542 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~ 542 (706)
++||+..+. ......+..|...|.+++|+|+ +.+|++++.|+.|++||+.++. ....+.+|...|.++
T Consensus 80 ~iWd~~~~~--------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~ 151 (297)
T 2pm7_B 80 MIWKEENGR--------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151 (297)
T ss_dssp EEEEBSSSC--------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEE
T ss_pred EEEEcCCCc--------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceE
Confidence 999997542 1133456678899999999997 8999999999999999998763 245678899999999
Q ss_pred EEccC-------------CCEEEEecCCCcEEEEEcCCCc----eEEEEeecccCEEEEEEEeCC---CEEEEEeCCCCE
Q 005254 543 EFSPV-------------DQVVITASGDKTIKIWSISDGS----CLKTFEGHTSSVLRASFLTRG---AQIVSCGADGLV 602 (706)
Q Consensus 543 ~~s~~-------------~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i 602 (706)
+|+|+ +++|++++.|+.|++||+.+++ +...+.+|...|.+++|+|++ ++|++++.|++|
T Consensus 152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v 231 (297)
T 2pm7_B 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231 (297)
T ss_dssp EECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred eecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcE
Confidence 99997 5799999999999999998776 667888999999999999984 899999999999
Q ss_pred EEEECCCCe---EEEEe--ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 603 KLWTVRTGE---CIATY--DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 603 ~iwd~~~~~---~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
++||+.++. ....+ ..|...|.+++|+|++++|++++.||.|++|+...
T Consensus 232 ~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 999998743 22233 47889999999999999999999999999999863
No 88
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-36 Score=295.30 Aligned_cols=276 Identities=18% Similarity=0.307 Sum_probs=241.3
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeC-CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeE
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG 445 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 445 (706)
..+++++.++.|++||+.+++....+.. |...+.++. ++|++.. +++++.||.|++||+.+++.+..+..|...|.
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~--~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 180 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVK--WSHDGSF-LSVGLGNGLVDIYDVESQTKLRTMAGHQARVG 180 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEE--ECCCCCE-EEEECCCCeEEEEECcCCeEEEEecCCCCceE
Confidence 4467778899999999999988877776 788999998 8888877 99999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 005254 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 525 (706)
+++|++. ++++++.||.|++||+.... .....+..|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 181 ~~~~~~~---~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 181 CLSWNRH---VLSSGSRSGAIHHHDVRIAN---------HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp EEEEETT---EEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred EEEECCC---EEEEEcCCCCEEEEecccCc---------ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence 9999553 89999999999999997432 15566778999999999999999999999999999999999
Q ss_pred ccEEEEEeecCCcEEEEEEccCCC-EEEEec--CCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEE--eCCC
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPVDQ-VVITAS--GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC--GADG 600 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg 600 (706)
++....+..|...|.+++|+|++. ++++++ .|+.|++||+.+++++..+. +...+.+++|+|++++|+++ +.||
T Consensus 249 ~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg 327 (401)
T 4aez_A 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDN 327 (401)
T ss_dssp SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCC
Confidence 999999999999999999999764 566654 79999999999999998886 67889999999999999994 4899
Q ss_pred CEEEEECCCCeEEEE--eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHH
Q 005254 601 LVKLWTVRTGECIAT--YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEA 658 (706)
Q Consensus 601 ~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 658 (706)
.|++||+.+++.... +.+|...|.+++|+|++++|++++.||.|++|++.+++.....
T Consensus 328 ~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred cEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 999999999765544 6699999999999999999999999999999999998766543
No 89
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.4e-37 Score=309.44 Aligned_cols=293 Identities=15% Similarity=0.197 Sum_probs=237.9
Q ss_pred EecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCcee--eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEE
Q 005254 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (706)
...++...|.+++|.|.++.+|++|+.||.|++||+.++.. ...+.+|.+.|.++. |+|.+..+|++++.||+|++
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~--f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLK--FNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEE--ECSSCTTEEEEECSSSCEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEE--EeCCCCCEEEEEeCCCEEEE
Confidence 34567788999999998899999999999999999987654 345568999999998 88755545999999999999
Q ss_pred EeCCCceEEEEEeC--CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 426 WDSESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 426 ~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
||++++........ +...+.+++|+|++. +|++|+.||.|++||++.. ....+..|...|++++|+
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~-----------~~~~~~~h~~~v~~v~~~ 259 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK-----------ELWNLRMHKKKVTHVALN 259 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC-----------BCCCSBCCSSCEEEEEEC
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc-----------eeEEEecccceEEeeeec
Confidence 99987765444433 344678899999987 8999999999999998643 334456789999999999
Q ss_pred CCCC-EEEEeeCCCcEEEEeCCCccEEE---EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc
Q 005254 504 PNDS-LVCTGSQDRTACVWRLPDLVSVV---TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 579 (706)
Q Consensus 504 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 579 (706)
|++. ++++++.|+.|++||+.+.+... ...+|...|++++|+|++++|++++.||.|++||+.++++...+..|..
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence 9876 78899999999999998765433 3356999999999999999999999999999999999988887766543
Q ss_pred ------CEEEEEEEeCCCEEEEEe------------CCCCEEEEECCCCeEEEEec-cCCCcEEEE-EEcCCCCEEEEEe
Q 005254 580 ------SVLRASFLTRGAQIVSCG------------ADGLVKLWTVRTGECIATYD-KHEDKIWAL-AVGKKTEMFATGG 639 (706)
Q Consensus 580 ------~i~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~-~~s~~~~~l~~~~ 639 (706)
.+....|+|++.+++++. .++.|++||..+++.+..+. +|...|.++ +|+|+|++|++|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~ 419 (435)
T 4e54_B 340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM 419 (435)
T ss_dssp CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence 233456777777766654 34579999999999988875 788889887 6999999999876
Q ss_pred CCCcEEEEECCchhHH
Q 005254 640 SDALVNLWHDSTAAER 655 (706)
Q Consensus 640 ~dg~i~vw~~~~~~~~ 655 (706)
|+.|++|++.+++.+
T Consensus 420 -d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 420 -GYHILIWSQQEARTR 434 (435)
T ss_dssp -SSEEEECCCC-----
T ss_pred -CCcEEEEECCcCeee
Confidence 889999999988754
No 90
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=281.12 Aligned_cols=283 Identities=24% Similarity=0.359 Sum_probs=233.4
Q ss_pred EEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee--ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Q 005254 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK--GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF 140 (706)
Q Consensus 63 i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 140 (706)
.++|+||+++ +||+| .|++|+|||+++++++..+. +|...|++++|+|++++||+|+.|++|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4789999987 67765 58999999999999888775 57788999999999999999999999999999999999999
Q ss_pred eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC-eeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 141 KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 141 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
.+|...+.++.+.+ .. +++++.++.+++|+.... ..+..+.+|...+..+.+.++++++++++.||.|++||+++
T Consensus 106 ~~h~~~~~~~~~~~--~~--l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 106 TSHSARVGSLSWNS--YI--LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp ECCSSCEEEEEEET--TE--EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred cCccceEEEeecCC--CE--EEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 99999998877764 43 999999999999998765 45667889999999999999999999999999999999875
Q ss_pred CcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccc
Q 005254 220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 299 (706)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 299 (706)
++......
T Consensus 182 ~~~~~~~~------------------------------------------------------------------------ 189 (318)
T 4ggc_A 182 GEGGWVPL------------------------------------------------------------------------ 189 (318)
T ss_dssp BTTBSCCS------------------------------------------------------------------------
T ss_pred Ccccccce------------------------------------------------------------------------
Confidence 43211000
Q ss_pred cCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEE
Q 005254 300 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379 (706)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 379 (706)
T Consensus 190 -------------------------------------------------------------------------------- 189 (318)
T 4ggc_A 190 -------------------------------------------------------------------------------- 189 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeE--E
Q 005254 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF--L 457 (706)
Q Consensus 380 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l 457 (706)
.. ...+.+.|.+++++|++..+ +
T Consensus 190 ----------~~---------------------------------------------~~~~~~~v~~~~~~~~~~~~~~~ 214 (318)
T 4ggc_A 190 ----------QT---------------------------------------------FTQHQGAVKAVAWCPWQSNVLAT 214 (318)
T ss_dssp ----------EE---------------------------------------------ECCCCSCEEEEEECTTSTTEEEE
T ss_pred ----------ee---------------------------------------------ecccCCceEEEEecCCCCcEEEE
Confidence 00 01122344445555544433 3
Q ss_pred EEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee--CCCcEEEEeCCCccEEEEEeec
Q 005254 458 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSVVTFRGH 535 (706)
Q Consensus 458 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~ 535 (706)
++++.++.|++|+.... .......+...+..+.++|+++.+++++ .|+.|++||+.+++++..+.+|
T Consensus 215 ~~~~~~~~i~lwd~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH 283 (318)
T 4ggc_A 215 GGGTSDRHIRIWNVCSG-----------ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 283 (318)
T ss_dssp EECTTTCEEEEEETTTC-----------CEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred EecCCCCEEEEEecccc-----------cccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC
Confidence 46678899999998765 3344556778899999999999887755 7999999999999999999999
Q ss_pred CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc
Q 005254 536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 569 (706)
Q Consensus 536 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 569 (706)
...|++++|+|++++|++++.||+|+|||+.+..
T Consensus 284 ~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 284 TSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp SSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 9999999999999999999999999999997643
No 91
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.2e-36 Score=293.67 Aligned_cols=293 Identities=14% Similarity=0.154 Sum_probs=210.5
Q ss_pred CccEEEEEEccCCCEEEEEecc-------CeEEEEECCCCeE----------EEEeeccCCCeEEEEECCCCCEEEEe--
Q 005254 60 SDTITALALSPDDKLLFSSGHS-------REIRVWDLSTLKC----------LRSWKGHDGPAIGMACHPSGGLLATA-- 120 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d-------~~i~iwd~~~~~~----------~~~~~~~~~~v~~~~~s~~~~~l~~~-- 120 (706)
..+|.+++|+||+++||+|+.+ +.|++|++..+.. ...+.+|...|.+++++ +..+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 4689999999999999998753 3699999875431 12456788888888765 4566665
Q ss_pred ---------cCCCcEEEEECCCCeEE----EEe-----eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEE
Q 005254 121 ---------GADRKVLVWDVDGGFCT----HYF-----KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 182 (706)
Q Consensus 121 ---------~~d~~i~vw~~~~~~~~----~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 182 (706)
+.|+.+++|++...... ... ..+...+.+++|+|||+..++++++.|++|++||+++++.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 35788999998664321 111 234456899999999998666677789999999999999998
Q ss_pred EeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccc
Q 005254 183 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS 262 (706)
Q Consensus 183 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (706)
.+. |.+.|.+++|+|||+++++++.++ +++|+..+++....
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~------------------------------------- 212 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIAR------------------------------------- 212 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEE-------------------------------------
T ss_pred EeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceee-------------------------------------
Confidence 885 778899999999999999988555 55665543321110
Q ss_pred cceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecccccee
Q 005254 263 LEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME 342 (706)
Q Consensus 263 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 342 (706)
T Consensus 213 -------------------------------------------------------------------------------- 212 (365)
T 4h5i_A 213 -------------------------------------------------------------------------------- 212 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 343 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
.....|...+.++. ++|++.. +++++.|+.
T Consensus 213 -----------------------------------------------~~~~~~~~~v~~v~--fspdg~~-l~~~s~d~~ 242 (365)
T 4h5i_A 213 -----------------------------------------------KTDFDKNWSLSKIN--FIADDTV-LIAASLKKG 242 (365)
T ss_dssp -----------------------------------------------ECCCCTTEEEEEEE--EEETTEE-EEEEEESSS
T ss_pred -----------------------------------------------eecCCCCCCEEEEE--EcCCCCE-EEEEecCCc
Confidence 01122333444444 4555544 444443331
Q ss_pred EEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEE
Q 005254 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 502 (706)
. ...+++|++.... ........+..|...|++++|
T Consensus 243 ~---------------------------------------~~~i~~~~~~~~~------~~~~~~~~~~~~~~~V~~~~~ 277 (365)
T 4h5i_A 243 K---------------------------------------GIVLTKISIKSGN------TSVLRSKQVTNRFKGITSMDV 277 (365)
T ss_dssp C---------------------------------------CEEEEEEEEETTE------EEEEEEEEEESSCSCEEEEEE
T ss_pred c---------------------------------------eeEEeecccccce------ecceeeeeecCCCCCeEeEEE
Confidence 0 0023344433221 001123345567788999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCccEEEEE-eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 503 APNDSLVCTGSQDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 503 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
+|||++||+|+.|+.|+|||+.+++++..+ .+|...|++++|+|||++||+++.|++|+|||+...
T Consensus 278 Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 278 DMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999999885 689999999999999999999999999999999643
No 92
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.7e-36 Score=297.28 Aligned_cols=282 Identities=28% Similarity=0.560 Sum_probs=246.6
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
++...+.++.+ +++++++++.+|.|++||+.+++....+.+|...|.++. + +++. +++|+.||.|++||+.+
T Consensus 131 ~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~--~--~~~~-l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 131 ETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ--Y--DERV-IITGSSDSTVRVWDVNT 202 (435)
T ss_dssp SSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEE--C--CSSE-EEEEETTSCEEEEESSS
T ss_pred CCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEE--E--CCCE-EEEEcCCCeEEEEECCC
Confidence 34456777666 788999999999999999999999999999999999987 4 4555 99999999999999999
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
++.+..+..|...|.+++|+++ ++++++.||.|++||+..... ........+|...|.++++ ++++++
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~v~~~~~--~~~~l~ 270 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTD-------ITLRRVLVGHRAAVNVVDF--DDKYIV 270 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSC-------CEEEEEECCCSSCEEEEEE--ETTEEE
T ss_pred CcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCC-------ceeeeEecCCCCcEEEEEe--CCCEEE
Confidence 9999999999999999999854 899999999999999986532 1133567789999999999 788999
Q ss_pred EeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCC
Q 005254 511 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590 (706)
Q Consensus 511 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~ 590 (706)
+|+.||.|++||+.+++.+..+.+|...|.+++|+ ++++++++.||.|++||+.+++++..+.+|...|.+++| ++
T Consensus 271 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 271 SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DN 346 (435)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CS
T ss_pred EEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cC
Confidence 99999999999999999999999999999999994 789999999999999999999999999999999999998 78
Q ss_pred CEEEEEeCCCCEEEEECCCCe---------EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHH
Q 005254 591 AQIVSCGADGLVKLWTVRTGE---------CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEA 658 (706)
Q Consensus 591 ~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 658 (706)
++|++|+.||.|++||+.+++ ++..+.+|.+.|.+++| ++++|++++.||.|++||+.++......
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAE 421 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----------
T ss_pred CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccC
Confidence 899999999999999998776 88999999999999999 7889999999999999999887655443
No 93
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-37 Score=303.02 Aligned_cols=284 Identities=21% Similarity=0.214 Sum_probs=231.9
Q ss_pred cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc--eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC
Q 005254 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM--SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 429 (706)
Q Consensus 352 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 429 (706)
+...|.+++|+| +++++++++.++.|++||+.++ +....+.+|...+.++. ++|+++. |++++.|+.|++||+.
T Consensus 10 ~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~--~s~~~~~-l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 10 LPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVD--WAPKSNR-IVTCSQDRNAYVYEKR 85 (377)
T ss_dssp CSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEE--ECTTTCC-EEEEETTSSEEEC---
T ss_pred CCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEE--EeCCCCE-EEEEeCCCeEEEEEcC
Confidence 567899999998 7789999999999999999988 77888999999999998 8888877 9999999999999999
Q ss_pred Cce---EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee-cCcceEEEEEcCC
Q 005254 430 SRC---CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPN 505 (706)
Q Consensus 430 ~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~ 505 (706)
+++ ....+..|...|.+++|+|+++ ++++++.|+.|++||+..... ......+.. |...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~h~~~v~~~~~~~~ 157 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQEND-------WWVSKHLKRPLRSTILSLDWHPN 157 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC------------CCCCEEECSSCCSCEEEEEECTT
T ss_pred CCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCccc-------ceeeeEeecccCCCeEEEEEcCC
Confidence 887 6677788999999999999987 899999999999999986531 112344555 8999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCC------------------CccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC
Q 005254 506 DSLVCTGSQDRTACVWRLP------------------DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 567 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 567 (706)
+++|++++.|+.|++||+. .++.+..+ +|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 236 (377)
T 3dwl_C 158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA 236 (377)
T ss_dssp SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 9999999999999999985 34556666 8999999999999999999999999999999999
Q ss_pred Cce----EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe------------------------------EE
Q 005254 568 GSC----LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE------------------------------CI 613 (706)
Q Consensus 568 ~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------------------------------~~ 613 (706)
++. +..+.+|...|.+++|+|++++|++++.++.+ +|+...+. .+
T Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (377)
T 3dwl_C 237 PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPV 315 (377)
T ss_dssp TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----
T ss_pred CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccc
Confidence 987 78889999999999999999999998766655 67654211 00
Q ss_pred ------EEe----------------ccCCCcEEEEEEcCCC-C---EEEEEeCCCcEEEEEC
Q 005254 614 ------ATY----------------DKHEDKIWALAVGKKT-E---MFATGGSDALVNLWHD 649 (706)
Q Consensus 614 ------~~~----------------~~~~~~v~~~~~s~~~-~---~l~~~~~dg~i~vw~~ 649 (706)
..+ ..|.+.|+++.+.+++ . .|+|+|.||.|++||+
T Consensus 316 ~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 316 SFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ---------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 011 1399999999976544 3 6999999999999986
No 94
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.7e-36 Score=279.29 Aligned_cols=264 Identities=17% Similarity=0.252 Sum_probs=202.5
Q ss_pred EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC--CeEEEEeeccCCCeEEEEECCC--CCEEEEecCCCcEEEE
Q 005254 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST--LKCLRSWKGHDGPAIGMACHPS--GGLLATAGADRKVLVW 129 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~vw 129 (706)
..+.+|...|++++|+|+|++||+|+.|+.|+|||+.+ ++++..+.+|.++|.+++|+|+ +++||+++.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 46789999999999999999999999999999999974 4678899999999999999874 8999999999999999
Q ss_pred ECCCCe--EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe--eEEEeecccceEEEEEEecCCCEEEE
Q 005254 130 DVDGGF--CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLIS 205 (706)
Q Consensus 130 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~ 205 (706)
|+.+++ .+..+.+|...|.+++|+|+....++++++.|+.|++||++++. ....+.+|...|.+++|+|++..-
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~-- 160 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE-- 160 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc--
Confidence 998874 55677889999999999997333459999999999999998763 245678899999999999974210
Q ss_pred EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCe
Q 005254 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 285 (706)
Q Consensus 206 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 285 (706)
++. ..
T Consensus 161 ---~~~--------~~---------------------------------------------------------------- 165 (297)
T 2pm7_B 161 ---DGE--------HN---------------------------------------------------------------- 165 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---ccc--------CC----------------------------------------------------------------
Confidence 000 00
Q ss_pred EEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCC
Q 005254 286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE 365 (706)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 365 (706)
.+.+
T Consensus 166 ----------------------------------------------------------------------------~~~~ 169 (297)
T 2pm7_B 166 ----------------------------------------------------------------------------GTKE 169 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 0001
Q ss_pred CcEEEEEecCCcEEEEeCCCce----eeEeeeCCcceEEEeeeeeecCC--CEEEEEeeCCCcEEEEeCCCce---EEEE
Q 005254 366 EQYLAVATNIEQVQVYDLSSMS----CSYVLAGHSEIVLCLDTCALSSG--KILIVTGSKDNSVRLWDSESRC---CVGV 436 (706)
Q Consensus 366 ~~~l~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~---~~~~ 436 (706)
+.++++++.|+.|++||+.++. ....+.+|...|.+++ ++|++ ..++++++.|++|++||+.+.. ....
T Consensus 170 ~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~--~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~ 247 (297)
T 2pm7_B 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA--WSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL 247 (297)
T ss_dssp CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE--ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE
T ss_pred cceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE--ECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee
Confidence 2233333333333333333222 2335677888888888 77775 4569999999999999987642 1223
Q ss_pred E--eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 437 G--TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 437 ~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
+ ..|...|.+++|+|+++ +|++++.|+.|++|+...
T Consensus 248 ~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 248 LKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSSSCCSSCEEEEEECSSSC-CEEEEETTSCEEEEEECT
T ss_pred eecccCCCcEEEEEECCCCC-EEEEEcCCCcEEEEEECC
Confidence 3 46788999999999987 899999999999999863
No 95
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=274.81 Aligned_cols=277 Identities=21% Similarity=0.350 Sum_probs=239.3
Q ss_pred eEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee--CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEE
Q 005254 357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 434 (706)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 434 (706)
..++|++. ++|+++. |+.|++||+.+++....+. +|...|.++. +.++++. +++|+.||.|++||+.+++.+
T Consensus 29 ~~l~WS~~--~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~--~~~~~~~-l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 29 NLVDWSSG--NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVA--WIKEGNY-LAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp BCEEECTT--SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEE--ECTTSSE-EEEEETTSEEEEEETTTTEEE
T ss_pred eEEEECCC--CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEE--ECCCCCE-EEEEECCCcEEEeecCCceeE
Confidence 45778753 3777765 7999999999998877665 6777899998 8888887 999999999999999999999
Q ss_pred EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC
Q 005254 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514 (706)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 514 (706)
..+.+|...+.++.+.+. ++++++.++.+++|+..... ........|...+..+.++++++++++++.
T Consensus 103 ~~~~~h~~~~~~~~~~~~---~l~s~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 170 (318)
T 4ggc_A 103 RNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAPDGRHLASGGN 170 (318)
T ss_dssp EEEECCSSCEEEEEEETT---EEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEecCccceEEEeecCCC---EEEEEecCCceEeeecCCCc---------eeEEEEcCccCceEEEEEcCCCCEEEEEec
Confidence 999999999887776654 89999999999999987542 255667889999999999999999999999
Q ss_pred CCcEEEEeCCCccE----EEEEeecCCcEEEEEEccCCCE---EEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 515 DRTACVWRLPDLVS----VVTFRGHKRGIWSVEFSPVDQV---VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 515 dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~---l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
||.|++||+.+++. ......+...|.+++++|++.. +++++.++.|++||........... +...+..+.|+
T Consensus 171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~ 249 (318)
T 4ggc_A 171 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWS 249 (318)
T ss_dssp TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEE
T ss_pred CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeec
Confidence 99999999987643 4455668889999999997653 3467889999999998887776654 77889999999
Q ss_pred eCCCEEEEEe--CCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 588 TRGAQIVSCG--ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 588 ~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
++++.+++++ .|+.|++||+.+++++..+.+|.+.|++++|+||+++|+|++.||+|++||+.+.
T Consensus 250 ~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 250 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred ccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999887755 7999999999999999999999999999999999999999999999999998653
No 96
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.2e-34 Score=288.60 Aligned_cols=276 Identities=26% Similarity=0.484 Sum_probs=237.3
Q ss_pred ecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe
Q 005254 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF 135 (706)
Q Consensus 56 l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 135 (706)
..+|...|.|+++ ++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++++|++|+.||.|++||+.+++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 3456778998887 7999999999999999999999999999999999999999 78899999999999999999999
Q ss_pred EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeE---EEeecccceEEEEEEecCCCEEEEEeCCCEE
Q 005254 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV---ATLDKHFSRVTSMAITSDGSTLISAGRDKVV 212 (706)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 212 (706)
.+..+.+|...|.+++|++ + .+++|+.||.|++||+.+++.. ..+.+|...|.+++| +++++++++.||.|
T Consensus 205 ~~~~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i 278 (435)
T 1p22_A 205 MLNTLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTI 278 (435)
T ss_dssp EEEEECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred EEEEEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeE
Confidence 9999999999999999975 3 4999999999999999887755 667889999999999 77899999999999
Q ss_pred EEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccC
Q 005254 213 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292 (706)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 292 (706)
++||+++++.+..+
T Consensus 279 ~vwd~~~~~~~~~~------------------------------------------------------------------ 292 (435)
T 1p22_A 279 KVWNTSTCEFVRTL------------------------------------------------------------------ 292 (435)
T ss_dssp EEEETTTCCEEEEE------------------------------------------------------------------
T ss_pred EEEECCcCcEEEEE------------------------------------------------------------------
Confidence 99999876544332
Q ss_pred ccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEE
Q 005254 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372 (706)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 372 (706)
.++...+.++.+ ++..++++
T Consensus 293 ---------------------------------------------------------~~~~~~v~~~~~---~~~~l~~g 312 (435)
T 1p22_A 293 ---------------------------------------------------------NGHKRGIACLQY---RDRLVVSG 312 (435)
T ss_dssp ---------------------------------------------------------ECCSSCEEEEEE---ETTEEEEE
T ss_pred ---------------------------------------------------------cCCCCcEEEEEe---CCCEEEEE
Confidence 123344555555 45789999
Q ss_pred ecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce---------EEEEEeCCCcC
Q 005254 373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC---------CVGVGTGHMGA 443 (706)
Q Consensus 373 ~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~ 443 (706)
+.++.|++||+.+++....+.+|...+.++. + ++.. +++|+.||.|++||+.++. .+..+..|.+.
T Consensus 313 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~--~--~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~ 387 (435)
T 1p22_A 313 SSDNTIRLWDIECGACLRVLEGHEELVRCIR--F--DNKR-IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 387 (435)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEE--C--CSSE-EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC
T ss_pred eCCCeEEEEECCCCCEEEEEeCCcCcEEEEE--e--cCCE-EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCC
Confidence 9999999999999999999999999999987 4 4555 9999999999999987766 78889999999
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCC
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 475 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 475 (706)
|.+++| ++. ++++++.||.|++||+....
T Consensus 388 v~~l~~--~~~-~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 388 VFRLQF--DEF-QIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp CCCEEE--CSS-CEEECCSSSEEEEEC-----
T ss_pred eEEEEe--CCC-EEEEEeCCCEEEEEECCCCC
Confidence 999999 444 79999999999999998653
No 97
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.1e-35 Score=281.48 Aligned_cols=267 Identities=18% Similarity=0.257 Sum_probs=201.0
Q ss_pred EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe--EEEEeeccCCCeEEEEECC--CCCEEEEecCCCcEEEE
Q 005254 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK--CLRSWKGHDGPAIGMACHP--SGGLLATAGADRKVLVW 129 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~vw 129 (706)
..+.+|...|++++|+|+|++||+|+.|+.|+|||+.++. .+..+.+|...|.+++|+| ++++|++++.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 4567899999999999999999999999999999998875 5678999999999999986 48999999999999999
Q ss_pred ECCCC--eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee---EEEeecccceEEEEEEecCCCEEE
Q 005254 130 DVDGG--FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC---VATLDKHFSRVTSMAITSDGSTLI 204 (706)
Q Consensus 130 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~ 204 (706)
|++++ +....+.+|...|.+++|+|++...++++|+.|+.|++||+.++.. ...+.+|...+.+++|+|++..
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-- 164 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP-- 164 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC--
Confidence 99887 4567788999999999999984445599999999999999987632 3455688899999999998520
Q ss_pred EEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 205 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
+.+ .+... +.
T Consensus 165 -----~~~--~~~~~---------------------~~------------------------------------------ 174 (316)
T 3bg1_A 165 -----GSL--IDHPS---------------------GQ------------------------------------------ 174 (316)
T ss_dssp -------------CC---------------------SC------------------------------------------
T ss_pred -----ccc--ccccc---------------------cc------------------------------------------
Confidence 100 00000 00
Q ss_pred eEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC
Q 005254 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 364 (706)
.+.
T Consensus 175 -----------------------------------------------------------------------------~~~ 177 (316)
T 3bg1_A 175 -----------------------------------------------------------------------------KPN 177 (316)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred -----------------------------------------------------------------------------Ccc
Confidence 001
Q ss_pred CCcEEEEEecCCcEEEEeCCCc---eeeEeeeCCcceEEEeeeeeecCC---CEEEEEeeCCCcEEEEeCCCc---e-EE
Q 005254 365 EEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCALSSG---KILIVTGSKDNSVRLWDSESR---C-CV 434 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~---~-~~ 434 (706)
.+.++++++.|+.|++||+... .....+.+|...|.++. ++|++ ..+|++++.|++|++|++.+. . ..
T Consensus 178 ~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~--~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~ 255 (316)
T 3bg1_A 178 YIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA--WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSP 255 (316)
T ss_dssp CCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE--CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBC
T ss_pred ccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE--ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhh
Confidence 2234455555555555555432 34456778888888888 77765 245999999999999998762 1 22
Q ss_pred EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEec
Q 005254 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 472 (706)
..+..|...|.+++|+|+++ +|++++.|+.|++|+..
T Consensus 256 ~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 256 KLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEEEEC
T ss_pred hhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEEC
Confidence 33456889999999999987 89999999999999975
No 98
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.7e-36 Score=284.01 Aligned_cols=248 Identities=23% Similarity=0.365 Sum_probs=208.2
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce--EEEEEeCCCcCeEEEEEecC--CCeEEEEecCCCeE
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC--CVGVGTGHMGAVGAVAFSKK--LQNFLVSGSSDHTI 466 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i 466 (706)
.+.+|...|.+++ ++++++. |++|+.|++|++||+.++. .+..+.+|...|.+++|+++ +. +|++++.|++|
T Consensus 8 ~~~~H~~~V~~v~--~s~~g~~-lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~-~l~s~s~D~~v 83 (316)
T 3bg1_A 8 VDTSHEDMIHDAQ--MDYYGTR-LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGN-ILASCSYDRKV 83 (316)
T ss_dssp ------CCEEEEE--ECGGGCE-EEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSS-CEEEEETTSCE
T ss_pred ecccccCeEEEee--EcCCCCE-EEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCC-EEEEEECCCEE
Confidence 4568999999998 8888887 9999999999999998764 46678899999999999863 44 89999999999
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCccE---EEEEeecCCcEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVS---VVTFRGHKRGIWS 541 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~ 541 (706)
++||+..+. ......+.+|...|.+++|+|+ +.+|++++.|+.|++||+..+.. ...+.+|...|.+
T Consensus 84 ~iWd~~~~~--------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 84 IIWREENGT--------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA 155 (316)
T ss_dssp EEECCSSSC--------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred EEEECCCCc--------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence 999987542 1134456779999999999998 88999999999999999987632 3345678999999
Q ss_pred EEEccC-----------------CCEEEEecCCCcEEEEEcCCC---ceEEEEeecccCEEEEEEEeCC----CEEEEEe
Q 005254 542 VEFSPV-----------------DQVVITASGDKTIKIWSISDG---SCLKTFEGHTSSVLRASFLTRG----AQIVSCG 597 (706)
Q Consensus 542 ~~~s~~-----------------~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~ 597 (706)
++|+|+ +++|++++.|+.|++||+... +++..+.+|...|.+++|+|++ ++|++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence 999997 478999999999999999755 4677888999999999999986 8999999
Q ss_pred CCCCEEEEECCCC---e-EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 598 ADGLVKLWTVRTG---E-CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 598 ~dg~i~iwd~~~~---~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.||+|++||+.+. + ....+..|.+.|.+++|+|++++|++++.||.|++|+..
T Consensus 236 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 236 QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999999763 1 223456789999999999999999999999999999975
No 99
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.4e-34 Score=281.15 Aligned_cols=312 Identities=15% Similarity=0.247 Sum_probs=226.5
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC----eEEEEeeCCCCcEEEEEEcCC--CCceEEEEEecCCe
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG----FCTHYFKGHKGVVSSILFHPD--TDKSLLFSGSDDAT 169 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~dg~ 169 (706)
..+.+|...|++++|+|++++||+++.||.|++||+.++ +....+.+|...|.+++|+|. ++. +++++.||.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~--l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI--IASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSE--EEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCE--EEEEcCCCe
Confidence 456789999999999999999999999999999999876 567778899999999999994 554 999999999
Q ss_pred EEEEECCCC---------eeEEEeecccceEEEEEEecC--CCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEee
Q 005254 170 VRVWDLLAK---------KCVATLDKHFSRVTSMAITSD--GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 238 (706)
Q Consensus 170 i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 238 (706)
|++||++++ +.+..+..|...|.+++|+|+ +.+|++++.||.|++||+++++....+...........
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~- 161 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI- 161 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC-
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc-
Confidence 999999887 567888899999999999999 99999999999999999987664433221110000000
Q ss_pred CCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCe
Q 005254 239 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQG 318 (706)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (706)
T Consensus 162 -------------------------------------------------------------------------------- 161 (351)
T 3f3f_A 162 -------------------------------------------------------------------------------- 161 (351)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcce
Q 005254 319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI 398 (706)
Q Consensus 319 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 398 (706)
....+...
T Consensus 162 ------------------------------------------------------------------------~~~~~~~~ 169 (351)
T 3f3f_A 162 ------------------------------------------------------------------------PPANHLQS 169 (351)
T ss_dssp ------------------------------------------------------------------------CCSSCSCC
T ss_pred ------------------------------------------------------------------------ccCCcccc
Confidence 11234445
Q ss_pred EEEeeeeeecC--CCEEEEEeeCCCcEEEEeCCCceE--EEEEeCCCcCeEEEEEecCCC---eEEEEecCCCeEEEEEe
Q 005254 399 VLCLDTCALSS--GKILIVTGSKDNSVRLWDSESRCC--VGVGTGHMGAVGAVAFSKKLQ---NFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 399 i~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~d~~i~i~~~ 471 (706)
+.++. +.|+ ...++++++.++.+.+|+...++. +..+..|...|.+++|+|++. .++++++.||.|++||+
T Consensus 170 ~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 170 DFCLS--WCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp CEEEE--ECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEE
T ss_pred eeEEE--eccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeC
Confidence 55665 5554 233488899999998888777765 666778999999999999973 58999999999999999
Q ss_pred cCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe----eCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccC
Q 005254 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG----SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV 547 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 547 (706)
....... ..............++....+..+ .....+.+|+....+.+..+.+|...|++++|+|+
T Consensus 248 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 317 (351)
T 3f3f_A 248 TEKLSPL----------ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT 317 (351)
T ss_dssp EECC-------------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred CCCcCcc----------ccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence 8653211 111122222333333333333333 33445667777777888889999999999999999
Q ss_pred CCEEEEecCCCcEEEEEcCCCceEEEE
Q 005254 548 DQVVITASGDKTIKIWSISDGSCLKTF 574 (706)
Q Consensus 548 ~~~l~~~~~dg~i~iwd~~~~~~~~~~ 574 (706)
+++|++++.||.|++||+.+++....+
T Consensus 318 ~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 318 GTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp SCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred CCEEEEecCCCcEEEEecCcCcchhhe
Confidence 999999999999999999988655544
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-34 Score=278.85 Aligned_cols=258 Identities=19% Similarity=0.316 Sum_probs=213.2
Q ss_pred CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECC--CCeEEEEeeccCCCeEEEEECCC--CCEEEEecCCCc
Q 005254 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS--TLKCLRSWKGHDGPAIGMACHPS--GGLLATAGADRK 125 (706)
Q Consensus 50 ~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~ 125 (706)
|+.+..+.+|...|++++|+|++++||+++.||.|++||+. +++.+..+.+|...|.+++|+|+ +++|++++.|+.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 45677889999999999999999999999999999999998 66788899999999999999987 999999999999
Q ss_pred EEEEECCCCe--EEEEeeCCCCcEEEEEEcCC--CCceEEEEEecCCeEEEEECCCCe--eEEEeecccceEEEEEEec-
Q 005254 126 VLVWDVDGGF--CTHYFKGHKGVVSSILFHPD--TDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITS- 198 (706)
Q Consensus 126 i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~- 198 (706)
|++||+.+++ .+..+..|...|.+++|+|+ +.. +++++.||.|++||+.++. ....+..|...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL--LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE--EEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCE--EEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 9999999997 77788889999999999998 554 9999999999999998873 4456678999999999999
Q ss_pred ------------CCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceE
Q 005254 199 ------------DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 266 (706)
Q Consensus 199 ------------~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (706)
++.++++++.||.|++||+++.....
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------------------------------ 196 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY------------------------------------------ 196 (379)
T ss_dssp C----------CTTCEEEEEETTSCEEEEEEETTTTEE------------------------------------------
T ss_pred cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce------------------------------------------
Confidence 57888888888888888865322110
Q ss_pred EEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEe
Q 005254 267 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS 346 (706)
Q Consensus 267 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (706)
T Consensus 197 -------------------------------------------------------------------------------- 196 (379)
T 3jrp_A 197 -------------------------------------------------------------------------------- 196 (379)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCC--CEEEEEeeCCCcEE
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG--KILIVTGSKDNSVR 424 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~l~~~~~dg~i~ 424 (706)
.....+.+|...+.++. ++|++ ..++++++.||.|+
T Consensus 197 ----------------------------------------~~~~~~~~h~~~v~~~~--~sp~~~~~~~l~s~~~dg~i~ 234 (379)
T 3jrp_A 197 ----------------------------------------VLESTLEGHSDWVRDVA--WSPTVLLRSYLASVSQDRTCI 234 (379)
T ss_dssp ----------------------------------------EEEEEECCCSSCEEEEE--ECCCCSSSEEEEEEETTSCEE
T ss_pred ----------------------------------------eeEEEEecccCcEeEEE--ECCCCCCCCeEEEEeCCCEEE
Confidence 11124456777787877 77773 45599999999999
Q ss_pred EEeCCCce---EEEE--EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 425 LWDSESRC---CVGV--GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 425 i~d~~~~~---~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
+||+.++. .... ...|...|.+++|+|+++ +|++++.||.|++|++...
T Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-CEEEEESSSSEEEEEEEET
T ss_pred EEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC-EEEEecCCCcEEEEeCCCC
Confidence 99998763 2222 234888999999999988 8899999999999999753
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.1e-34 Score=277.18 Aligned_cols=302 Identities=16% Similarity=0.243 Sum_probs=219.0
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC----eEEEEeeccCCCeEEEEECC--CCCEEEEecCCCcE
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL----KCLRSWKGHDGPAIGMACHP--SGGLLATAGADRKV 126 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i 126 (706)
...+.+|.+.|++++|+|++++||+++.||.|++||+.++ +.+..+.+|...|.+++|+| ++++|++++.|+.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3567899999999999999999999999999999999876 57778899999999999999 69999999999999
Q ss_pred EEEECCCC---------eEEEEeeCCCCcEEEEEEcCC--CCceEEEEEecCCeEEEEECCCCeeEEEee----------
Q 005254 127 LVWDVDGG---------FCTHYFKGHKGVVSSILFHPD--TDKSLLFSGSDDATVRVWDLLAKKCVATLD---------- 185 (706)
Q Consensus 127 ~vw~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------- 185 (706)
++||+.++ +.+..+..|...|.+++|+|+ ++. +++++.||.|++||+.+++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLK--LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSE--EEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcE--EEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 99999887 667888899999999999998 555 9999999999999998877544332
Q ss_pred ---cccceEEEEEEecC---CCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcc
Q 005254 186 ---KHFSRVTSMAITSD---GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK 259 (706)
Q Consensus 186 ---~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (706)
.|...+.+++|+|+ +..+++++.++.+.+|+...+..
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------- 204 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL------------------------------------- 204 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE-------------------------------------
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce-------------------------------------
Confidence 57788999999997 88999999999887776543211
Q ss_pred ccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecccc
Q 005254 260 RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK 339 (706)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 339 (706)
T Consensus 205 -------------------------------------------------------------------------------- 204 (351)
T 3f3f_A 205 -------------------------------------------------------------------------------- 204 (351)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCC---EEEEE
Q 005254 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK---ILIVT 416 (706)
Q Consensus 340 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~l~~ 416 (706)
.....+.+|...+.++. +.|++. .++++
T Consensus 205 -----------------------------------------------~~~~~~~~h~~~i~~~~--~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 205 -----------------------------------------------HVAAKLPGHKSLIRSIS--WAPSIGRWYQLIAT 235 (351)
T ss_dssp -----------------------------------------------EEEEECCCCCSCEEEEE--ECCCSSCSSEEEEE
T ss_pred -----------------------------------------------eeeeecCCCCcceeEEE--ECCCCCCcceEEEE
Confidence 01113445666777776 666662 45889
Q ss_pred eeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecC----CCeEEEEEecCCCCCCCcccccceeEEEee
Q 005254 417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS----DHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 492 (706)
++.||.|++||+.++........+..........+... .+..+.. ...+.+|+.. .......+.+
T Consensus 236 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 304 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVD-MDAQGRSDSNTEEKAELQSNL----------QVELLSEHDD 304 (351)
T ss_dssp EETTSCEEEEEEEECC----------------------------------------CCSE----------EEEEEEEECT
T ss_pred EcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccc-cccccccccccceeeeecccc----------cccEEEEEec
Confidence 99999999999887655444333333333334443322 2222222 2223333322 2235566778
Q ss_pred cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe
Q 005254 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 533 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 533 (706)
|...|++++|+|++++|++++.||.|++||+.+++....+.
T Consensus 305 h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 99999999999999999999999999999999876655443
No 102
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.2e-34 Score=278.99 Aligned_cols=299 Identities=18% Similarity=0.242 Sum_probs=231.0
Q ss_pred EEECCCCeEEEEeeccCCCeEEEEECCC---CCEEEEecCCCcEEEEECCC-CeEE-EEeeCCCCcEEEEEEcCCCCceE
Q 005254 86 VWDLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDG-GFCT-HYFKGHKGVVSSILFHPDTDKSL 160 (706)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~ 160 (706)
.|+....+.+..+.+|...|++++|+|+ |++|++++.|+.|++||+.+ +..+ ..+.+|...|.+++|+|+++.
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-- 100 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK-- 100 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSE--
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCE--
Confidence 4556677888889999999999999999 59999999999999999987 5554 778899999999999998876
Q ss_pred EEEEecCCeEEEEECCCCeeEEEeecccceEEEEEE--ecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEee
Q 005254 161 LFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI--TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 238 (706)
Q Consensus 161 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 238 (706)
+++++.||.|++||+.+++.+. +..|...|.+++| ++++++|++++.||.|++||+++++.+..+.....
T Consensus 101 l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------- 172 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPER------- 172 (368)
T ss_dssp EEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSC-------
T ss_pred EEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCC-------
Confidence 9999999999999999998776 5579999999999 89999999999999999999987654433321110
Q ss_pred CCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCe
Q 005254 239 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQG 318 (706)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (706)
T Consensus 173 -------------------------------------------------------------------------------- 172 (368)
T 3mmy_A 173 -------------------------------------------------------------------------------- 172 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcce
Q 005254 319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI 398 (706)
Q Consensus 319 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 398 (706)
T Consensus 173 -------------------------------------------------------------------------------- 172 (368)
T 3mmy_A 173 -------------------------------------------------------------------------------- 172 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE--eCCCcCeEEEEEecCCC---eEEEEecCCCeEEEEEecC
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG--TGHMGAVGAVAFSKKLQ---NFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~---~~l~~~~~d~~i~i~~~~~ 473 (706)
+.++. +. ... +++++.++.+.+|++......... ..+...+.++++.++.. ..+++++.||.|++|++..
T Consensus 173 ~~~~~--~~--~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 173 CYCAD--VI--YPM-AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp EEEEE--EE--TTE-EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred ceEEE--ec--CCe-eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 11111 11 112 455555666666666554332221 12334455555554432 2499999999999999976
Q ss_pred CCCCCCcccccceeEEEeecCc------------ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEE
Q 005254 474 LSDDAEQPMNLKAKAVVAAHGK------------DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 541 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 541 (706)
... ......+..|.. .|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+
T Consensus 248 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 320 (368)
T 3mmy_A 248 PNP-------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320 (368)
T ss_dssp SCH-------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEE
T ss_pred CCc-------cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceE
Confidence 421 113334444444 7999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEecCCCcEEEEEcC
Q 005254 542 VEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 542 ~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
++|+|++++|++++.|+..+.|++.
T Consensus 321 ~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 321 CCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EEECTTSSCEEEEECCCSTTCGGGC
T ss_pred EEECCCCCeEEEEeccccccccccc
Confidence 9999999999999998866555543
No 103
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.3e-34 Score=274.92 Aligned_cols=282 Identities=18% Similarity=0.181 Sum_probs=239.5
Q ss_pred ecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce---eeEeeeCCcceEEEeeeeeecCCC-EEEEEeeCCCcEE
Q 005254 349 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYVLAGHSEIVLCLDTCALSSGK-ILIVTGSKDNSVR 424 (706)
Q Consensus 349 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~-~~l~~~~~dg~i~ 424 (706)
..+|.+.|.+++|.| ++.++++++.++.|++|++.++. ....+..|...+.++. +.+++. . +++++.||.|+
T Consensus 7 ~~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~-l~~~~~dg~i~ 82 (342)
T 1yfq_A 7 EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN--FIDNTDLQ-IYVGTVQGEIL 82 (342)
T ss_dssp SSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEE--EEESSSEE-EEEEETTSCEE
T ss_pred ccCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEE--ECCCCCcE-EEEEcCCCeEE
Confidence 346888999999998 77899999999999999998776 3455668999999998 888887 5 99999999999
Q ss_pred EEeC-CCceEEEEEeC--CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEE
Q 005254 425 LWDS-ESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 425 i~d~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (706)
+||+ .+++. ..+.. |...|.+++|+| +. ++++++.|+.|++||+......... ........+. +...+.+++
T Consensus 83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~-~~~~v~~~~ 157 (342)
T 1yfq_A 83 KVDLIGSPSF-QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIA-VKNLNSNNTK-VKNKIFTMD 157 (342)
T ss_dssp EECSSSSSSE-EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEE-EEESCSSSSS-SCCCEEEEE
T ss_pred EEEeccCCce-EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEccccccccccc-ccCCeeeEEe-eCCceEEEE
Confidence 9999 77755 66777 999999999999 55 8999999999999998751100000 0000111122 678899999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCC-cc--EEEEEeecCCcEEEEEEcc-CCCEEEEecCCCcEEEEEcCCC------ceE
Q 005254 502 VAPNDSLVCTGSQDRTACVWRLPD-LV--SVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDG------SCL 571 (706)
Q Consensus 502 ~s~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~~ 571 (706)
++|++ +++++.|+.|++||+.+ +. .......|...+.+++|+| +++++++++.||.|++|++... +..
T Consensus 158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp ECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred ecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 99987 99999999999999988 54 3445556888999999999 9999999999999999999887 788
Q ss_pred EEEeeccc---------CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccC-CCcEEEEEEcCCCCEEEEEeCC
Q 005254 572 KTFEGHTS---------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-EDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 572 ~~~~~~~~---------~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d 641 (706)
..+..|.. .|.+++|+|++++|++++.||.|++||+.+++++..+.+| ...|.+++ |++++|++++.|
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSD 313 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence 88888865 9999999999999999999999999999999999999998 99999999 999999999999
Q ss_pred Cc
Q 005254 642 AL 643 (706)
Q Consensus 642 g~ 643 (706)
|.
T Consensus 314 g~ 315 (342)
T 1yfq_A 314 DT 315 (342)
T ss_dssp TH
T ss_pred Cc
Confidence 98
No 104
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.7e-34 Score=274.72 Aligned_cols=285 Identities=16% Similarity=0.124 Sum_probs=238.6
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe---EEEEeeccCCCeEEEEECCCCC-EEEEecCCCcEEE
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK---CLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLV 128 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v 128 (706)
.....+|...|++++|+|++++|++++.|+.|++||+.+++ ....+.+|...|.+++|+|+++ +|++++.|+.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 34456899999999999999999999999999999998877 3455668999999999999999 9999999999999
Q ss_pred EEC-CCCeEEEEeeC--CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC---------CeeEEEeecccceEEEEEE
Q 005254 129 WDV-DGGFCTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA---------KKCVATLDKHFSRVTSMAI 196 (706)
Q Consensus 129 w~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~ 196 (706)
||+ .+++. ..+.+ |...|.+++|+| ++. +++++.|+.|++||+++ ++.+..+. |...+.+++|
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~--l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDK--LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTE--EEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCE--EEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence 999 87765 66788 999999999999 665 99999999999999987 77666665 8899999999
Q ss_pred ecCCCEEEEEeCCCEEEEEeCCC-CcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCe
Q 005254 197 TSDGSTLISAGRDKVVNLWDLRD-YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 275 (706)
Q Consensus 197 ~~~~~~l~~~~~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (706)
++++ +++++.++.|++||+++ +.....
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~-------------------------------------------------- 186 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGT-------------------------------------------------- 186 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTCCCE--------------------------------------------------
T ss_pred cCCc--EEEEeCCCeEEEEECCccccccce--------------------------------------------------
Confidence 9987 99999999999999876 432110
Q ss_pred EEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCce
Q 005254 276 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 355 (706)
Q Consensus 276 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (706)
.....+...
T Consensus 187 -----------------------------------------------------------------------~~~~~~~~~ 195 (342)
T 1yfq_A 187 -----------------------------------------------------------------------IEESGLKYQ 195 (342)
T ss_dssp -----------------------------------------------------------------------EEECSCSSC
T ss_pred -----------------------------------------------------------------------eeecCCCCc
Confidence 011123345
Q ss_pred eeEeeEeCCCCcEEEEEecCCcEEEEeCCCc------eeeEeeeCCcc---------eEEEeeeeeecCCCEEEEEeeCC
Q 005254 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSM------SCSYVLAGHSE---------IVLCLDTCALSSGKILIVTGSKD 420 (706)
Q Consensus 356 v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~------~~~~~~~~~~~---------~i~~~~~~~~~~~~~~l~~~~~d 420 (706)
+.+++|.|.++.++++++.+|.+++|++... +....+..|.. .+.++. ++|+++. |++++.|
T Consensus 196 i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~s~~~~~-l~~~~~d 272 (342)
T 1yfq_A 196 IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE--FSPRHKF-LYTAGSD 272 (342)
T ss_dssp EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEE--ECTTTCC-EEEEETT
T ss_pred eeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEE--EcCCCCE-EEEecCC
Confidence 6666776535678888888999999998876 66777777755 899988 8888887 8999999
Q ss_pred CcEEEEeCCCceEEEEEeCC-CcCeEEEEEecCCCeEEEEecCCCe-EEEEEe
Q 005254 421 NSVRLWDSESRCCVGVGTGH-MGAVGAVAFSKKLQNFLVSGSSDHT-IKVWSF 471 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~-i~i~~~ 471 (706)
|.|++||+.+++.+..+..| ...|.+++ |+++ +|++++.||. .+.+..
T Consensus 273 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 273 GIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDN-ILCLATSDDTFKTNAAI 322 (342)
T ss_dssp SCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSS-EEEEEEECTHHHHCSSS
T ss_pred ceEEEEcCccHhHhhhhhcccCCCceEec--CCCC-eEEEEecCCcccccccc
Confidence 99999999999999999998 99999999 8877 8999999998 555543
No 105
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=279.81 Aligned_cols=300 Identities=17% Similarity=0.251 Sum_probs=239.7
Q ss_pred EEECCCCeEEEEeeCCCCcEEEEEEcCCC-CceEEEEEecCCeEEEEECCC-CeeE-EEeecccceEEEEEEecCCCEEE
Q 005254 128 VWDVDGGFCTHYFKGHKGVVSSILFHPDT-DKSLLFSGSDDATVRVWDLLA-KKCV-ATLDKHFSRVTSMAITSDGSTLI 204 (706)
Q Consensus 128 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~ 204 (706)
.|+....+.+..+.+|...|.+++|+|++ +..++++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 34556667788889999999999999983 023599999999999999987 5554 77889999999999999999999
Q ss_pred EEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 205 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
+++.||.|++||+.+++...
T Consensus 103 s~~~dg~v~iwd~~~~~~~~------------------------------------------------------------ 122 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQ------------------------------------------------------------ 122 (368)
T ss_dssp EEETTSEEEEEETTTTEEEE------------------------------------------------------------
T ss_pred EEcCCCcEEEEEcCCCCcee------------------------------------------------------------
Confidence 99999999999987543211
Q ss_pred eEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC
Q 005254 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 364 (706)
T Consensus 123 -------------------------------------------------------------------------------- 122 (368)
T 3mmy_A 123 -------------------------------------------------------------------------------- 122 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 444 (706)
+..|...+.++.+...+++.. +++++.||.|++||+.+++.+..+..+. .+
T Consensus 123 ---------------------------~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~ 173 (368)
T 3mmy_A 123 ---------------------------IAQHDAPVKTIHWIKAPNYSC-VMTGSWDKTLKFWDTRSSNPMMVLQLPE-RC 173 (368)
T ss_dssp ---------------------------EEECSSCEEEEEEEECSSCEE-EEEEETTSEEEEECSSCSSCSEEEECSS-CE
T ss_pred ---------------------------eccccCceEEEEEEeCCCCCE-EEEccCCCcEEEEECCCCcEEEEEecCC-Cc
Confidence 112455666666323555555 9999999999999999998888887664 56
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCE----EEEeeCCCcEEE
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL----VCTGSQDRTACV 520 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~----l~~~~~dg~i~i 520 (706)
.++.+.++ .+++++.++.+.+|++..... ........+...+.++.+.++... +++++.||.|++
T Consensus 174 ~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 174 YCADVIYP---MAVVATAERGLIVYQLENQPS--------EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp EEEEEETT---EEEEEEGGGCEEEEECSSSCE--------EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred eEEEecCC---eeEEEeCCCcEEEEEeccccc--------hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 66666654 688889999999999976421 011112233445666666665544 999999999999
Q ss_pred EeCCCc---cEEEEEeecCC------------cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEE
Q 005254 521 WRLPDL---VSVVTFRGHKR------------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRAS 585 (706)
Q Consensus 521 ~d~~~~---~~~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 585 (706)
||+... .....+..|.. .|++++|+|++++|++++.||.|++||+.+++++..+.+|..+|.+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 322 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACC 322 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEE
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEE
Confidence 999887 56677777766 799999999999999999999999999999999999999999999999
Q ss_pred EEeCCCEEEEEeCCCCEEEEEC
Q 005254 586 FLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 586 ~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
|+|+|++|++++.|+..+.|++
T Consensus 323 ~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 323 FNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp ECTTSSCEEEEECCCSTTCGGG
T ss_pred ECCCCCeEEEEecccccccccc
Confidence 9999999999999986555443
No 106
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=5.5e-33 Score=250.47 Aligned_cols=177 Identities=13% Similarity=0.191 Sum_probs=142.5
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC---CCCEEEEeeCCCcEEEEeCCCccEEEEEeecC--
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK-- 536 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-- 536 (706)
.|+.|++|++.... +.......|...++.++|+| ++.+|++++.|++|+|||+.+++.+.++.+|.
T Consensus 155 ~d~~V~~~~~s~dG---------~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~ 225 (356)
T 2w18_A 155 SDQQVEVMTFAEDG---------GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY 225 (356)
T ss_dssp TTCEEEEEEECTTS---------CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC--
T ss_pred CCCcEEEEEECCCC---------ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc
Confidence 36666666663211 14445567888899999999 78999999999999999999999999998754
Q ss_pred -CcEEEEEEccCCCEE------------EEecCCCcEEEEEcCCCceEEEE-----eecccCEEEEEEEeCCCEEEEEeC
Q 005254 537 -RGIWSVEFSPVDQVV------------ITASGDKTIKIWSISDGSCLKTF-----EGHTSSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 537 -~~v~~~~~s~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~ 598 (706)
..+.+++|+|+|+++ ++|+.|++|++||..+++.+..+ .+|...+.+.. .++.++++++.
T Consensus 226 v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~--~sg~~lASgS~ 303 (356)
T 2w18_A 226 QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD--VKDHCAAAILT 303 (356)
T ss_dssp -CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE--EETTEEEEEET
T ss_pred eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccc--cCCCEEEEEcC
Confidence 367788999999886 56788999999999999988766 35665554444 44889999999
Q ss_pred CCCEEEEECCCCeEEEEeccCCCcEE-EEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 599 DGLVKLWTVRTGECIATYDKHEDKIW-ALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
|++|+|||+.+++++.++.+|...+. +++|||||++|++|+.|++|++||+
T Consensus 304 DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 304 SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999999999988665 5899999999999999999999986
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.6e-34 Score=281.00 Aligned_cols=195 Identities=22% Similarity=0.364 Sum_probs=174.2
Q ss_pred ceEEcCCCCEEEEe-e-CCeEEEEEccCCe----EEEeecCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCCC----
Q 005254 24 PLVVSSDGSFIACA-C-GESINIVDLSNAS----IKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTL---- 92 (706)
Q Consensus 24 ~~~~s~dg~~l~~~-~-~~~i~i~d~~~~~----~~~~l~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~---- 92 (706)
.++++|+...+++. + ++.|.||++.+.. ....+.+|...|++++|+| ++++||+++.||.|++||+.++
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~ 118 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL 118 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence 68888888766643 3 4589999986542 3456789999999999999 9999999999999999999988
Q ss_pred ---eEEEEeeccCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCeEEEEe--eCCCCcEEEEEEcCCCCceEEEEEec
Q 005254 93 ---KCLRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDVDGGFCTHYF--KGHKGVVSSILFHPDTDKSLLFSGSD 166 (706)
Q Consensus 93 ---~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~ 166 (706)
+.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++.+..+ ..|...|.+++|+|+++. +++++.
T Consensus 119 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~ 196 (402)
T 2aq5_A 119 PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL--ICTSCR 196 (402)
T ss_dssp CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC--EEEEET
T ss_pred ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE--EEEEec
Confidence 6788899999999999999998 69999999999999999999999999 789999999999998877 999999
Q ss_pred CCeEEEEECCCCeeEEEe-ecccce-EEEEEEecCCCEEEEE---eCCCEEEEEeCCCC
Q 005254 167 DATVRVWDLLAKKCVATL-DKHFSR-VTSMAITSDGSTLISA---GRDKVVNLWDLRDY 220 (706)
Q Consensus 167 dg~i~vwd~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~---~~dg~i~~w~~~~~ 220 (706)
||.|++||+++++.+..+ ..|.+. +.++.|+|++++|+++ +.|+.|++||+++.
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence 999999999999999888 788776 8999999999999998 68999999998754
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=276.92 Aligned_cols=253 Identities=24% Similarity=0.372 Sum_probs=219.8
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC--CceEEEEEeCCCcCeEEEEEecC--CCeEEEEecC
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRCCVGVGTGHMGAVGAVAFSKK--LQNFLVSGSS 462 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~ 462 (706)
+....+.+|...|.+++ ++++++. +++++.||.|++||+. +++.+..+..|...|.+++|+++ +. +|++++.
T Consensus 2 ~~~~~~~~h~~~v~~~~--~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~ 77 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAV--LDYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSY 77 (379)
T ss_dssp ---CCEEECCCCEEEEE--ECSSSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEET
T ss_pred CccEEecCCcccEEEEE--EcCCCCE-EEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCC-EEEEecc
Confidence 34557889999999998 8888887 9999999999999998 66777888999999999999876 55 8999999
Q ss_pred CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCc--cEEEEEeecCCc
Q 005254 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRG 538 (706)
Q Consensus 463 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~ 538 (706)
||.|++||+.... .........|...|.+++|+|+ +.+|++++.||.|++||+.+. .....+..|...
T Consensus 78 dg~v~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 149 (379)
T 3jrp_A 78 DGKVLIWKEENGR--------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 149 (379)
T ss_dssp TSCEEEEEEETTE--------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred CCEEEEEEcCCCc--------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence 9999999998642 2244556678899999999999 999999999999999999887 345567789999
Q ss_pred EEEEEEcc-------------CCCEEEEecCCCcEEEEEcCCCc----eEEEEeecccCEEEEEEEeC---CCEEEEEeC
Q 005254 539 IWSVEFSP-------------VDQVVITASGDKTIKIWSISDGS----CLKTFEGHTSSVLRASFLTR---GAQIVSCGA 598 (706)
Q Consensus 539 v~~~~~s~-------------~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~ 598 (706)
|.+++|+| ++.+|++++.||.|++||+.++. ....+.+|...|.+++|+|+ +++|++++.
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~ 229 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 229 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence 99999999 69999999999999999998764 45677789999999999999 899999999
Q ss_pred CCCEEEEECCCCe---EEEEe--ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 599 DGLVKLWTVRTGE---CIATY--DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 599 dg~i~iwd~~~~~---~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
||.|++||+.+++ ....+ ..|...|++++|+|++++|++++.||.|++|++..
T Consensus 230 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 230 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 9999999999874 22223 35889999999999999999999999999999984
No 109
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=284.44 Aligned_cols=282 Identities=14% Similarity=0.241 Sum_probs=233.4
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce-----------eeEeeeCCc------------ceEEEeeeeee
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-----------CSYVLAGHS------------EIVLCLDTCAL 407 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~-----------~~~~~~~~~------------~~i~~~~~~~~ 407 (706)
.+.+.|.+++|+| ++.+|++++.+|.|++|++.++. ....+.+|. ..|.++. +.
T Consensus 26 ~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~--~~ 102 (447)
T 3dw8_B 26 AEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR--WL 102 (447)
T ss_dssp CGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE--EC
T ss_pred cccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE--Ec
Confidence 4568899999997 78999999999999999999876 477888998 7899998 77
Q ss_pred cCCC-EEEEEeeCCCcEEEEeCCCceEE---------------------------------------EE-EeCCCcCeEE
Q 005254 408 SSGK-ILIVTGSKDNSVRLWDSESRCCV---------------------------------------GV-GTGHMGAVGA 446 (706)
Q Consensus 408 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~---------------------------------------~~-~~~~~~~v~~ 446 (706)
|++. ..+++++.|+.|++||+.++... .. ...|...|.+
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 8762 34899999999999998765432 12 3579999999
Q ss_pred EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeE-------EEeecCcceEEEEEcCCC-CEEEEeeCCCcE
Q 005254 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA-------VVAAHGKDINSLAVAPND-SLVCTGSQDRTA 518 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i 518 (706)
++|+|+++ +++++ .|+.|++||+..... ... .+..|...|.+++|+|++ ++|++++.||.|
T Consensus 183 ~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 183 ISINSDYE-TYLSA-DDLRINLWHLEITDR---------SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp EEECTTSS-EEEEE-CSSEEEEEETTEEEE---------EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred EEEcCCCC-EEEEe-CCCeEEEEECCCCCc---------eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 99999987 78888 799999999873210 111 244688899999999998 999999999999
Q ss_pred EEEeCCCccE----EEEEeecCC------------cEEEEEEccCCCEEEEecCCCcEEEEEcCC-CceEEEEeecccC-
Q 005254 519 CVWRLPDLVS----VVTFRGHKR------------GIWSVEFSPVDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSS- 580 (706)
Q Consensus 519 ~i~d~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~- 580 (706)
++||+.+++. ...+..|.. .|.+++|+|++++|++++. +.|++||+.+ ++++..+.+|...
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence 9999999886 788888876 8999999999999999999 9999999997 8888888888642
Q ss_pred --------------EEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec-----------------------------
Q 005254 581 --------------VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD----------------------------- 617 (706)
Q Consensus 581 --------------i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------------- 617 (706)
+..++|+|++++|++++.||.|++||+.+++.+. +.
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEIS 409 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEE
T ss_pred ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccc
Confidence 3348999999999999999999999999988763 22
Q ss_pred ----cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 618 ----KHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 618 ----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
.+...|..++|+|++++|++++.++ +.+|.-
T Consensus 410 ~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 410 VDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp GGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2345688999999999999998776 777764
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.7e-34 Score=284.63 Aligned_cols=280 Identities=18% Similarity=0.228 Sum_probs=234.6
Q ss_pred eeEeCCCCcEEEEEecCCcEEEEeCCCce----eeEeeeCCcceEEEeeeeeec-CCCEEEEEeeCCCcEEEEeCCCc--
Q 005254 359 LKFLGEEEQYLAVATNIEQVQVYDLSSMS----CSYVLAGHSEIVLCLDTCALS-SGKILIVTGSKDNSVRLWDSESR-- 431 (706)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~-- 431 (706)
+++.+....++++++.+|.|++|++.... ....+.+|...|.++. ++| ++.. +++++.||.|++||+.++
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~--~~p~~~~~-l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIA--WCPHNDNV-IASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEE--ECTTCTTE-EEEEETTSEEEEEECCTTCC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEE--eCCCCCCE-EEEEeCCCeEEEEEccCCCC
Confidence 45555444455567889999999996642 3445778999999998 888 5555 999999999999999987
Q ss_pred -----eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE--eecCcceEEEEEcC
Q 005254 432 -----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAP 504 (706)
Q Consensus 432 -----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~ 504 (706)
+.+..+.+|...|.+++|+|+++.++++++.|+.|++||+.... ....+ ..|...|.+++|+|
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~ 186 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA----------AVLTLGPDVHPDTIYSVDWSR 186 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE----------EEEEECTTTCCSCEEEEEECT
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC----------ccEEEecCCCCCceEEEEECC
Confidence 66788899999999999999986699999999999999998652 44455 67899999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCccEEEEE-eecCCc-EEEEEEccCCCEEEEe---cCCCcEEEEEcCCCce-EEEEe-ec
Q 005254 505 NDSLVCTGSQDRTACVWRLPDLVSVVTF-RGHKRG-IWSVEFSPVDQVVITA---SGDKTIKIWSISDGSC-LKTFE-GH 577 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~-~~ 577 (706)
++++|++++.||.|++||+++++.+..+ ..|... +.+++|+|++++|+++ +.|+.|++||+.+++. +.... .|
T Consensus 187 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 266 (402)
T 2aq5_A 187 DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT 266 (402)
T ss_dssp TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC
T ss_pred CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC
Confidence 9999999999999999999999999988 678776 8999999999999999 7999999999988764 33332 46
Q ss_pred ccCEEEEEEEeCCCEEEE-EeCCCCEEEEECCCCeE-EEEecc--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 578 TSSVLRASFLTRGAQIVS-CGADGLVKLWTVRTGEC-IATYDK--HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 578 ~~~i~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
...+.+++|+|++++|++ ++.||.|++||+.++++ +..+.. |...|.+++|+|++.++++ .|+.+++|++.++.
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 778999999999999975 55799999999998873 444443 5689999999999998774 56799999998754
No 111
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=280.96 Aligned_cols=282 Identities=16% Similarity=0.255 Sum_probs=225.6
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCe-----------EEEeecCCC------------ccEEEEEEccCC--CEEE
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNAS-----------IKSTIEGGS------------DTITALALSPDD--KLLF 76 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~-----------~~~~l~~~~------------~~i~~l~~s~~~--~~l~ 76 (706)
.+++|+|||++||+++.+ .|+|||+.+++ ....+.+|. ..|++++|+|++ .+|+
T Consensus 32 ~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~ 111 (447)
T 3dw8_B 32 STVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111 (447)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEE
Confidence 379999999999999876 89999998877 578899998 889999999998 8999
Q ss_pred EEeccCeEEEEECCCCeEE---------------------------------------EE-eeccCCCeEEEEECCCCCE
Q 005254 77 SSGHSREIRVWDLSTLKCL---------------------------------------RS-WKGHDGPAIGMACHPSGGL 116 (706)
Q Consensus 77 s~~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~s~~~~~ 116 (706)
+++.|+.|++||+.++... .. ..+|...|.+++|+|++++
T Consensus 112 s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 191 (447)
T 3dw8_B 112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYET 191 (447)
T ss_dssp EEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSE
T ss_pred EeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCE
Confidence 9999999999999775442 12 3679999999999999999
Q ss_pred EEEecCCCcEEEEECCC-CeEEE-------EeeCCCCcEEEEEEcCCC-CceEEEEEecCCeEEEEECCCCee----EEE
Q 005254 117 LATAGADRKVLVWDVDG-GFCTH-------YFKGHKGVVSSILFHPDT-DKSLLFSGSDDATVRVWDLLAKKC----VAT 183 (706)
Q Consensus 117 l~~~~~d~~i~vw~~~~-~~~~~-------~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~----~~~ 183 (706)
|+++ .|+.|++||+.+ ++.+. .+.+|...|.+++|+|++ .. +++|+.||.|++||+++++. +..
T Consensus 192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~ 268 (447)
T 3dw8_B 192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT--FVYSSSKGTIRLCDMRASALCDRHSKL 268 (447)
T ss_dssp EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTE--EEEEETTSCEEEEETTTCSSSCTTCEE
T ss_pred EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcE--EEEEeCCCeEEEEECcCCccccceeeE
Confidence 9998 799999999984 44444 256899999999999987 54 99999999999999999886 778
Q ss_pred eecccc------------eEEEEEEecCCCEEEEEeCCCEEEEEeCCC-CcceeeecCcceee----------------e
Q 005254 184 LDKHFS------------RVTSMAITSDGSTLISAGRDKVVNLWDLRD-YSCKLTVPTYEMVE----------------A 234 (706)
Q Consensus 184 ~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~-~~~~~~~~~~~~~~----------------~ 234 (706)
+..|.. .|.+++|+|++++|++++. +.|++||++. ++.+..+..+..+. .
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 347 (447)
T 3dw8_B 269 FEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFE 347 (447)
T ss_dssp ECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCC
T ss_pred eccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceE
Confidence 888876 8999999999999999998 9999999997 77776666554322 2
Q ss_pred EEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccc-------------------
Q 005254 235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT------------------- 295 (706)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------------- 295 (706)
+++++++. .+++++.||.|++||+.++...........
T Consensus 348 ~~~s~~~~-----------------------~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (447)
T 3dw8_B 348 CCWNGSDS-----------------------VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRK 404 (447)
T ss_dssp EEECTTSS-----------------------EEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCC
T ss_pred EEECCCCC-----------------------EEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcc
Confidence 66777665 789999999999999999865432221110
Q ss_pred ---cccccCCCccceeEEEEccCCCeeEEEeeCCceEEEE
Q 005254 296 ---ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 332 (706)
Q Consensus 296 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (706)
...........+..++++|+++.+++++.++ +++|.
T Consensus 405 ~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 405 KDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp TTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred cccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 0001112345678899999999988887765 66664
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.5e-31 Score=260.62 Aligned_cols=337 Identities=14% Similarity=0.112 Sum_probs=261.6
Q ss_pred CEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEE
Q 005254 115 GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 194 (706)
Q Consensus 115 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 194 (706)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 467888899999999999999999888665 5899999999775 34677799999999999999998887665 89999
Q ss_pred EEecCCCEEEEEe-CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCC
Q 005254 195 AITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 273 (706)
Q Consensus 195 ~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (706)
+|+|++++|++++ .++.|++||+.+++....+
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~----------------------------------------------- 112 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV----------------------------------------------- 112 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-----------------------------------------------
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEE-----------------------------------------------
Confidence 9999999886655 5689999998765432211
Q ss_pred CeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccC
Q 005254 274 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 353 (706)
Q Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (706)
T Consensus 113 -------------------------------------------------------------------------------- 112 (391)
T 1l0q_A 113 -------------------------------------------------------------------------------- 112 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 433 (706)
..+ ..+.++. +.++++.++++++.++.|++||+.+++.
T Consensus 113 ---------------------------------------~~~-~~~~~~~--~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 150 (391)
T 1l0q_A 113 ---------------------------------------KTG-KSPLGLA--LSPDGKKLYVTNNGDKTVSVINTVTKAV 150 (391)
T ss_dssp ---------------------------------------ECS-SSEEEEE--ECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred ---------------------------------------eCC-CCcceEE--ECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 111 1234444 7788888668888999999999999998
Q ss_pred EEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee
Q 005254 434 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS 513 (706)
Q Consensus 434 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 513 (706)
+..+..+ ..+..++|+|+++.++++++.++.|++||+... .......+...+.+++|+|+++++++++
T Consensus 151 ~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-----------~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 151 INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----------SVIDTVKVEAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-----------EEEEEEECSSEEEEEEECTTSSEEEEEE
T ss_pred EEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-----------eEEEEEecCCCccceEECCCCCEEEEEe
Confidence 8887765 456999999999866688899999999999765 2222334566789999999999999888
Q ss_pred ---CCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEE-EEecCCCcEEEEEcCCCceEEEEeecccCEE-------
Q 005254 514 ---QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV-ITASGDKTIKIWSISDGSCLKTFEGHTSSVL------- 582 (706)
Q Consensus 514 ---~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~------- 582 (706)
.++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..|..+..
T Consensus 219 ~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGS 297 (391)
T ss_dssp ECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEE
T ss_pred cCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeec
Confidence 68999999999999888888765 57899999999987 6778899999999999999988876654321
Q ss_pred --------EEEEEeCC----------CEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE---eCC
Q 005254 583 --------RASFLTRG----------AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG---GSD 641 (706)
Q Consensus 583 --------~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~d 641 (706)
...|+.+. ..+...+.|...++||+.+|... .+..+ ...|+++|.|.++. ..|
T Consensus 298 ~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~----~~~~~--~~~~~~~g~y~~~~~~~~~~ 371 (391)
T 1l0q_A 298 IPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS----KKQNP--THTYSETGIYTVRLTVSNSN 371 (391)
T ss_dssp CSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE----CSSSC--EECCSSCEEEEEEEEEEETT
T ss_pred ccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc----CcCCC--eEEeCCCceEEEEEEEECCC
Confidence 11233322 23556667889999999888742 22333 36789999987753 355
Q ss_pred C
Q 005254 642 A 642 (706)
Q Consensus 642 g 642 (706)
|
T Consensus 372 g 372 (391)
T 1l0q_A 372 G 372 (391)
T ss_dssp E
T ss_pred C
Confidence 5
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.4e-33 Score=278.21 Aligned_cols=261 Identities=19% Similarity=0.336 Sum_probs=227.0
Q ss_pred EeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC----------ceEEEEEeCCCcCeEEEEEecCCCeEEEE
Q 005254 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----------RCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459 (706)
Q Consensus 390 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 459 (706)
.....|.+.|.++. +.|++..++++++.+|.|++|++.+ ...+..+..|...+.+++|+|++..+|++
T Consensus 122 ~~~~~h~~~v~~l~--~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 122 EIKINHEGEVNRAR--YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp EEEEEESSCCSEEE--EETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred EEEEcCCCcEEEEE--ECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence 34567888999998 8887666799999999999999986 57778888999999999999998779999
Q ss_pred ecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCc---cEEEEEeec
Q 005254 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL---VSVVTFRGH 535 (706)
Q Consensus 460 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~ 535 (706)
++.||.|++|++....... ...........|...|.+++|+| ++.++++++.||.|++||++++ +.+..+..|
T Consensus 200 ~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEH---RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp ECTTSCEEEEETTSCCBGG---GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred EeCCCeEEEEeCCCCCCCC---ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 9999999999998642111 11122455668999999999999 7789999999999999999987 577788899
Q ss_pred CCcEEEEEEccCCC-EEEEecCCCcEEEEEcCC-CceEEEEeecccCEEEEEEEeCCC-EEEEEeCCCCEEEEECCC---
Q 005254 536 KRGIWSVEFSPVDQ-VVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRT--- 609 (706)
Q Consensus 536 ~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~--- 609 (706)
...|++++|+|++. +|++++.||.|++||+++ ..++..+..|...|.+++|+|+++ +|++++.||.|++||+..
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 99999999999987 689999999999999988 567888999999999999999985 699999999999999987
Q ss_pred -----------CeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCchhHH
Q 005254 610 -----------GECIATYDKHEDKIWALAVGKKTE-MFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 610 -----------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
.+.+..+.+|...|.+++|+|+++ +|++++.||.|++|++......
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccccc
Confidence 467888889999999999999999 8999999999999999876544
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.3e-33 Score=267.47 Aligned_cols=230 Identities=14% Similarity=0.167 Sum_probs=181.4
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
+.+..+.++++++.|+.|++||..+++.+..+. +...|.+++++++ .++++ .++.|++||+.....
T Consensus 66 ~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~--------- 131 (355)
T 3vu4_A 66 MLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWK--------- 131 (355)
T ss_dssp ECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCC---------
T ss_pred EcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCce---------
Confidence 445566656788889999999999999998887 6679999999987 23333 478999999986511
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEE--eeCCCcEEEEeCCCcc---------------E-EEEEeecCCcEEEEEEccC
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCT--GSQDRTACVWRLPDLV---------------S-VVTFRGHKRGIWSVEFSPV 547 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~i~d~~~~~---------------~-~~~~~~~~~~v~~~~~s~~ 547 (706)
....+.. +...+++++ .++++ |+.||.|++||+.++. + +..+.+|..+|++++|+|+
T Consensus 132 ~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~ 206 (355)
T 3vu4_A 132 RITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK 206 (355)
T ss_dssp BSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT
T ss_pred eeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC
Confidence 1111111 234456666 56665 6899999999998765 2 6778999999999999999
Q ss_pred CCEEEEecCCCc-EEEEEcCCCceEEEEe-e-cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE--EEEe------
Q 005254 548 DQVVITASGDKT-IKIWSISDGSCLKTFE-G-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC--IATY------ 616 (706)
Q Consensus 548 ~~~l~~~~~dg~-i~iwd~~~~~~~~~~~-~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~------ 616 (706)
+++|++++.|++ |++||+.+++++..+. + |...|.+++|+|++++|++++.|+.|++||+.++.. ...+
T Consensus 207 g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~ 286 (355)
T 3vu4_A 207 SDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINM 286 (355)
T ss_dssp SSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEEC
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeec
Confidence 999999999998 9999999999999998 5 999999999999999999999999999999976531 1111
Q ss_pred --------------c-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhH
Q 005254 617 --------------D-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 617 --------------~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 654 (706)
. .+......++|++|+++|++++.||.+.+|++..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 287 KYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred cccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 0 1122346789999999999999999999999876553
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-33 Score=276.33 Aligned_cols=205 Identities=17% Similarity=0.189 Sum_probs=179.5
Q ss_pred cceEEcCCCCEEEEeeCCeEEEEEccCCe---EEEeecC-----------------------------------------
Q 005254 23 GPLVVSSDGSFIACACGESINIVDLSNAS---IKSTIEG----------------------------------------- 58 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~~i~i~d~~~~~---~~~~l~~----------------------------------------- 58 (706)
.+++|+|||++|+++.++.|.+||+.+++ .+..+..
T Consensus 8 ~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (450)
T 2vdu_B 8 QNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRT 87 (450)
T ss_dssp CEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC---------------------------------------
T ss_pred EEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccccc
Confidence 45999999999999999999999999998 6555543
Q ss_pred -------------CCccEEEEEEccCCCEE-EEEeccCeEEEEECC--CCeEEEEee--ccCCCeEEEEECCCCCEEEEe
Q 005254 59 -------------GSDTITALALSPDDKLL-FSSGHSREIRVWDLS--TLKCLRSWK--GHDGPAIGMACHPSGGLLATA 120 (706)
Q Consensus 59 -------------~~~~i~~l~~s~~~~~l-~s~~~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~ 120 (706)
|...|++++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+|++++|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 167 (450)
T 2vdu_B 88 AAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIA 167 (450)
T ss_dssp ------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEE
Confidence 33379999999999996 889999999999999 888888886 567899999999999999999
Q ss_pred cCCCcEEEEECCCCeEEE----EeeCCCCcEEEEEEcCC-CCceEEEEEecCCeEEEEECCCCeeEEE-eecccceEEEE
Q 005254 121 GADRKVLVWDVDGGFCTH----YFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAKKCVAT-LDKHFSRVTSM 194 (706)
Q Consensus 121 ~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~ 194 (706)
+.++.|++|++.+++... .+.+|...|.+++|+|+ ....++++++.|+.|++||+.+++.+.. +.+|.+.|.++
T Consensus 168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~ 247 (450)
T 2vdu_B 168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSI 247 (450)
T ss_dssp ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEE
T ss_pred eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEE
Confidence 999999999998877554 77789999999999998 1133499999999999999999988877 56899999999
Q ss_pred EEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 195 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 195 ~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
+|+ ++++|++++.|+.|++||+.+++.+..+..
T Consensus 248 ~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 248 CCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp EEC-STTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred EEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence 999 999999999999999999998876665543
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.7e-31 Score=266.89 Aligned_cols=240 Identities=9% Similarity=0.044 Sum_probs=201.7
Q ss_pred CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
+|...+.++. +.+++. ++++++.|+.|++||+.+++.+..+..|...+.+++|+|+++.++++++.++.|++||+..
T Consensus 167 ~~~~~v~~~~--~~~~~~-~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 167 KKLGFVETIS--IPEHNE-LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp TTCCEEEEEE--EGGGTE-EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred ccCCceeEEE--EcCCCE-EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 4556666765 545444 5899999999999999999999999899999999999999986667777899999999875
Q ss_pred CCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee--------CCCcEEEEeCCCccEEEEEeecCCcEEEEEEc
Q 005254 474 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS--------QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS 545 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s 545 (706)
.. ..... .....+.+++++|+++++++++ .||.|++||+.+++....+ .|...+.+++|+
T Consensus 244 ~~----------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~ 311 (433)
T 3bws_A 244 KL----------EIRKT-DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSG 311 (433)
T ss_dssp TE----------EEEEC-CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEEC
T ss_pred Cc----------EEEEe-cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEEC
Confidence 42 22222 2345689999999999999888 5889999999998777665 456689999999
Q ss_pred cCCCEE-EEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeC---------------CCCEEEEECCC
Q 005254 546 PVDQVV-ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA---------------DGLVKLWTVRT 609 (706)
Q Consensus 546 ~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~ 609 (706)
|+++.+ ++++.|+.|++||+.+++.+..+. +...+.+++|+|+|++|++++. ||.|++||+.+
T Consensus 312 ~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 312 NTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp SSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred CCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 999755 666899999999999998888876 7788999999999999988877 57999999999
Q ss_pred CeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 005254 610 GECIATYDKHEDKIWALAVGKKTEMFATGGS-DALVNLWHDS 650 (706)
Q Consensus 610 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~ 650 (706)
++.+..+.. ...+.+++|+|++++|++++. |+.|++|+++
T Consensus 391 ~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 391 DTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp TEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 999988876 457899999999999998875 9999999986
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.8e-31 Score=263.58 Aligned_cols=321 Identities=12% Similarity=0.117 Sum_probs=246.5
Q ss_pred ccEEEEE---EccCCCEEEEE--------------eccC--eEEEEECCCC--eEEEEeeccCCCeEEEEECCCCCEEEE
Q 005254 61 DTITALA---LSPDDKLLFSS--------------GHSR--EIRVWDLSTL--KCLRSWKGHDGPAIGMACHPSGGLLAT 119 (706)
Q Consensus 61 ~~i~~l~---~s~~~~~l~s~--------------~~d~--~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~ 119 (706)
..+..++ |+|+++.++.. +.++ .|..||.+++ +.+..+..+ ..+.+++|+|++.++++
T Consensus 61 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~ 139 (433)
T 3bws_A 61 IALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIP 139 (433)
T ss_dssp EEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEE
T ss_pred CccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEE
Confidence 4556666 77766655543 2333 4444555445 666677655 45569999998888888
Q ss_pred ecCCCcEEEEECCCCeEEE-----EeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEE
Q 005254 120 AGADRKVLVWDVDGGFCTH-----YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 194 (706)
Q Consensus 120 ~~~d~~i~vw~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 194 (706)
++.++.|++||+.+++... .+.+|...|.+++|+|++. ++++++.|+.|++||+++++.+..+..|...+.++
T Consensus 140 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~ 217 (433)
T 3bws_A 140 LLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL 217 (433)
T ss_dssp BTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred eCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence 8889999999999998887 4457899999999998765 48999999999999999999999998899999999
Q ss_pred EEecCCCEEEEEe-CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCC
Q 005254 195 AITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 273 (706)
Q Consensus 195 ~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (706)
+|+|+++.+++++ .++.|++||+++++....+...
T Consensus 218 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-------------------------------------------- 253 (433)
T 3bws_A 218 LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-------------------------------------------- 253 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC--------------------------------------------
T ss_pred EEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC--------------------------------------------
Confidence 9999999886555 7899999998765433222111
Q ss_pred CeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccC
Q 005254 274 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 353 (706)
Q Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (706)
T Consensus 254 -------------------------------------------------------------------------------- 253 (433)
T 3bws_A 254 -------------------------------------------------------------------------------- 253 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee--------CCCcEEE
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--------KDNSVRL 425 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~--------~dg~i~i 425 (706)
..+.++. +.|+++. +++++ .|+.|++
T Consensus 254 -------------------------------------------~~~~~~~--~~~~g~~-l~~~~~~~~~~~~~dg~i~~ 287 (433)
T 3bws_A 254 -------------------------------------------GLPRGLL--LSKDGKE-LYIAQFSASNQESGGGRLGI 287 (433)
T ss_dssp -------------------------------------------SEEEEEE--ECTTSSE-EEEEEEESCTTCSCCEEEEE
T ss_pred -------------------------------------------CCceEEE--EcCCCCE-EEEEECCCCccccCCCeEEE
Confidence 1122233 4555555 33333 5788999
Q ss_pred EeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 426 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 426 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
||+.+++.+... .+...+.+++|+|+++.++++++.++.|++||+.... ... ...+...+.+++|+|+
T Consensus 288 ~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~----------~~~-~~~~~~~~~~~~~s~d 355 (433)
T 3bws_A 288 YSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK----------VQK-SIPVFDKPNTIALSPD 355 (433)
T ss_dssp EETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE----------EEE-EEECSSSEEEEEECTT
T ss_pred EECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc----------EEE-EecCCCCCCeEEEcCC
Confidence 999888776665 3456888999999998778888999999999997542 222 2346778999999999
Q ss_pred CCEEEEeeC---------------CCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CCcEEEEEcCC
Q 005254 506 DSLVCTGSQ---------------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISD 567 (706)
Q Consensus 506 ~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~ 567 (706)
++++++++. ||.|++||+.+++.+..+.. ...+.+++|+|++++|++++. |+.|++|+++.
T Consensus 356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 999988876 57999999999998888876 567899999999999988765 99999999863
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.4e-32 Score=259.90 Aligned_cols=313 Identities=12% Similarity=0.105 Sum_probs=221.0
Q ss_pred EEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEE-EecC
Q 005254 44 IVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLA-TAGA 122 (706)
Q Consensus 44 i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~ 122 (706)
||++.+.+.+..+.+|...|++++|+|||++||+|+.++ ++|||+.+++....... ..+..+++.+++++++ +++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence 567777777778899999999999999999999998775 78999998887765543 3578889999988884 5677
Q ss_pred CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC-eeEEEeecccceEEEEEEecCCC
Q 005254 123 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-KCVATLDKHFSRVTSMAITSDGS 201 (706)
Q Consensus 123 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 201 (706)
|++|++||..+++.+..+. +...|.+++|+++. ++++ .++.|++||+.++ +.+..+.. +...+++++ .
T Consensus 80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~ 148 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--G 148 (355)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--T
T ss_pred ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--c
Confidence 8999999999999999887 77799999999852 3333 4789999999988 66666554 444556666 4
Q ss_pred EEEE--EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEE
Q 005254 202 TLIS--AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMW 279 (706)
Q Consensus 202 ~l~~--~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 279 (706)
++++ ++.+|.|++||+.++........
T Consensus 149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~--------------------------------------------------- 177 (355)
T 3vu4_A 149 LLVYSNEFNLGQIHITKLQSSGSATTQDQ--------------------------------------------------- 177 (355)
T ss_dssp EEEEEESSCTTCEEEEECCC------------------------------------------------------------
T ss_pred EEEEeCCCcCcEEEEEECCCCCccccccc---------------------------------------------------
Confidence 5655 57788899998875432110000
Q ss_pred ECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEe
Q 005254 280 NADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 359 (706)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 359 (706)
T Consensus 178 -------------------------------------------------------------------------------- 177 (355)
T 3vu4_A 178 -------------------------------------------------------------------------------- 177 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeCCCCcEEEEEecCCcEEEEeCCCcee-eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc-EEEEeCCCceEEEEE
Q 005254 360 KFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS-VRLWDSESRCCVGVG 437 (706)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~ 437 (706)
. . +...... ...+.+|...|.+++ ++|++.. +++++.|++ |++||+.+++.+..+
T Consensus 178 -----~------------~---~~~~~~p~~~~~~~h~~~v~~~~--~s~~g~~-l~s~s~d~~~v~iwd~~~~~~~~~~ 234 (355)
T 3vu4_A 178 -----G------------V---QQKAILGKGVLIKAHTNPIKMVR--LNRKSDM-VATCSQDGTIIRVFKTEDGVLVREF 234 (355)
T ss_dssp -----------------------------CCEEECCCSSCEEEEE--ECTTSSE-EEEEETTCSEEEEEETTTCCEEEEE
T ss_pred -----c------------c---cccccCcccEEEEccCCceEEEE--ECCCCCE-EEEEeCCCCEEEEEECCCCcEEEEE
Confidence 0 0 0000112 346778999999998 8888877 999999998 999999999999998
Q ss_pred e-C-CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccc-------------ceeEEEeecCcceEEEEE
Q 005254 438 T-G-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL-------------KAKAVVAAHGKDINSLAV 502 (706)
Q Consensus 438 ~-~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~i~~~~~ 502 (706)
. + |...|.+++|+|+++ +|++++.|++|++||+............. ...............++|
T Consensus 235 ~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (355)
T 3vu4_A 235 RRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313 (355)
T ss_dssp ECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred EcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence 8 5 999999999999987 89999999999999997653221111000 000011112233477999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCC
Q 005254 503 APNDSLVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 503 s~~~~~l~~~~~dg~i~i~d~~~ 525 (706)
+++++++++++.||.+++|++..
T Consensus 314 ~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 314 ISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp SSSSEEEEEETTTTEEEEEEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEEEEc
Confidence 99999999999999999998754
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.6e-31 Score=241.00 Aligned_cols=176 Identities=13% Similarity=0.115 Sum_probs=141.1
Q ss_pred CCCcEEEEeC-CCceEEEEEeCCCcCeEEEEEec---CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecC
Q 005254 419 KDNSVRLWDS-ESRCCVGVGTGHMGAVGAVAFSK---KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494 (706)
Q Consensus 419 ~dg~i~i~d~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (706)
.|+.|++|++ .+++.+..+..|...++.++|++ ++. +|++++.|++|++||+.+++ ....+.+|.
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk----------~l~tL~g~~ 223 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQ----------LLKKMHIDD 223 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCC----------EEEEEECCC
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCc----------EEEEEcCCC
Confidence 4777778877 44777777788899999999998 445 99999999999999998764 455555443
Q ss_pred ---cceEEEEEcCCCCEE------------EEeeCCCcEEEEeCCCccEEEEE-----eecCCcEEEEEEccCCCEEEEe
Q 005254 495 ---KDINSLAVAPNDSLV------------CTGSQDRTACVWRLPDLVSVVTF-----RGHKRGIWSVEFSPVDQVVITA 554 (706)
Q Consensus 495 ---~~i~~~~~s~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~ 554 (706)
..+.+++|+|+|.++ ++|+.|++|++||..+++.+..+ .+|...+.+..++ +.+++++
T Consensus 224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg 301 (356)
T 2w18_A 224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI 301 (356)
T ss_dssp ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE
T ss_pred cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE
Confidence 367788999999887 56788999999999999887765 3566665544444 8899999
Q ss_pred cCCCcEEEEEcCCCceEEEEeecccCEE-EEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 555 SGDKTIKIWSISDGSCLKTFEGHTSSVL-RASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 555 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
+.|++|+|||+.+++++.++.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 302 S~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 302 LTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999999887655 5899999999999999999999995
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-32 Score=268.80 Aligned_cols=286 Identities=12% Similarity=0.121 Sum_probs=233.7
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce---eeEeeeC------------------------------------
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYVLAG------------------------------------ 394 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~---~~~~~~~------------------------------------ 394 (706)
.++.+++|++ ++++++++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4567778777 45555555 56899999998887 5444442
Q ss_pred ------------------CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC--CceEEEEEe--CCCcCeEEEEEecC
Q 005254 395 ------------------HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRCCVGVGT--GHMGAVGAVAFSKK 452 (706)
Q Consensus 395 ------------------~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~--~~~~~v~~~~~~~~ 452 (706)
|...|.+++ ++|+++.++++++.||.|++||+. +++.+..+. .+...|.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLR--LTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -----------------CCCCCEEEEE--ECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred cccccCccccCCCCCCCccCCceEEEE--EcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 223688888 889999866999999999999999 888887776 56789999999999
Q ss_pred CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC---CCEEEEeeCCCcEEEEeCCCccEE
Q 005254 453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN---DSLVCTGSQDRTACVWRLPDLVSV 529 (706)
Q Consensus 453 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~~~ 529 (706)
++ +|++++.+|.+++|++........ ....+.+|...|++++|+|+ +++|++++.|+.|++||+.+++.+
T Consensus 161 ~~-~l~~~~~~g~v~~~~~~~~~~~~~------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 161 DT-TVIIADKFGDVYSIDINSIPEEKF------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp SS-EEEEEETTSEEEEEETTSCCCSSC------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred CC-EEEEEeCCCcEEEEecCCcccccc------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 87 899999999999999876542110 12244578899999999999 999999999999999999999888
Q ss_pred EE-EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeec-------------------------ccCEEE
Q 005254 530 VT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-------------------------TSSVLR 583 (706)
Q Consensus 530 ~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~i~~ 583 (706)
.. +.+|...|.+++|+ ++++|++++.|+.|++||+.+++++..+..+ ...+..
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 77 55899999999999 9999999999999999999999998888633 356899
Q ss_pred EEEEeCCCEEEEEe-CCCCEEEEEC--CCC---eEEEEeccCCCcEEEEEEcCCCCEEEEEeC------CCcEEEEECCc
Q 005254 584 ASFLTRGAQIVSCG-ADGLVKLWTV--RTG---ECIATYDKHEDKIWALAVGKKTEMFATGGS------DALVNLWHDST 651 (706)
Q Consensus 584 ~~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~vw~~~~ 651 (706)
++|+|++++|++++ .|+.|++|++ .++ +.+..+..| +.|.+++|+|++.++++++. +..|.+|.+..
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999999999999 8999999999 666 778888888 88999999996533333332 55688988754
Q ss_pred h
Q 005254 652 A 652 (706)
Q Consensus 652 ~ 652 (706)
.
T Consensus 392 ~ 392 (450)
T 2vdu_B 392 N 392 (450)
T ss_dssp T
T ss_pred C
Confidence 3
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.2e-31 Score=265.85 Aligned_cols=253 Identities=20% Similarity=0.368 Sum_probs=211.6
Q ss_pred EeecCCCccEEEEEEccC-CCEEEEEeccCeEEEEECCC----------CeEEEEeeccCCCeEEEEECCCCC-EEEEec
Q 005254 54 STIEGGSDTITALALSPD-DKLLFSSGHSREIRVWDLST----------LKCLRSWKGHDGPAIGMACHPSGG-LLATAG 121 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~-~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~ 121 (706)
....+|...|++++|+|+ +.+||+++.+|.|++||+.+ .+.+..+.+|...|.+++|+|++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 68999999999999999987 678888999999999999999998 999999
Q ss_pred CCCcEEEEECCCCeE-------EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC---eeEEEeecccceE
Q 005254 122 ADRKVLVWDVDGGFC-------THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRV 191 (706)
Q Consensus 122 ~d~~i~vw~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v 191 (706)
.||.|++|++.++.. ...+.+|...|.+++|+|++. .++++++.||.|++||++++ +.+..+..|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE-SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCC-CEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999987422 455678999999999999533 35889999999999999987 5777788999999
Q ss_pred EEEEEecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEe
Q 005254 192 TSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV 270 (706)
Q Consensus 192 ~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (706)
.+++|+|+++ ++++++.||.|++||+++...
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~------------------------------------------------ 312 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKL------------------------------------------------ 312 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTS------------------------------------------------
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC------------------------------------------------
Confidence 9999999987 688999999999999875221
Q ss_pred cCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEec
Q 005254 271 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV 350 (706)
Q Consensus 271 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (706)
T Consensus 313 -------------------------------------------------------------------------------- 312 (430)
T 2xyi_A 313 -------------------------------------------------------------------------------- 312 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
....+..|...+.++. ++|+++.++++++.|+.|++||+..
T Consensus 313 -------------------------------------~~~~~~~h~~~v~~i~--~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 313 -------------------------------------KLHSFESHKDEIFQVQ--WSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp -------------------------------------CSEEEECCSSCEEEEE--ECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred -------------------------------------CeEEeecCCCCEEEEE--ECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 0112334555666666 6777766688888888888888776
Q ss_pred --------------ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 431 --------------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 431 --------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
.+.+....+|...|.+++|+|+++.++++++.||.|++|++...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 35667778899999999999998878999999999999998753
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.4e-30 Score=253.58 Aligned_cols=270 Identities=14% Similarity=0.121 Sum_probs=231.0
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEE
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA 446 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 446 (706)
.++++++.++.|++||+.+++....+..|.. +.++. ++++++.++++++.|+.|++||+.+++.+..+..+. .+.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~--~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~ 78 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAV--ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQG 78 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEE--ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEE--ECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccc
Confidence 4677888899999999999999988887765 67777 889999867888899999999999999988887665 9999
Q ss_pred EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEE-EEeeCCCcEEEEeCCC
Q 005254 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV-CTGSQDRTACVWRLPD 525 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~ 525 (706)
++|+|+++.++++++.++.|++||+.... .... ..+...+.+++|+|+++.+ ++++.++.|++||+.+
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~----------~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNT----------VAGT-VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTE----------EEEE-EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCCe----------EEEE-EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 99999998666777788999999998652 2222 3345678999999999977 6778899999999999
Q ss_pred ccEEEEEeecCCcEEEEEEccCCCEE-EEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEe---CCCC
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPVDQVV-ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG---ADGL 601 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~ 601 (706)
++.+..+..+ ..+.+++|+|++++| ++++.++.|++||+.+++.+..+. +...+.+++|+|++++|++++ .++.
T Consensus 148 ~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 148 KAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred CcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCc
Confidence 9988888765 457999999999987 677889999999999998887776 566889999999999999888 6899
Q ss_pred EEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEECCchhH
Q 005254 602 VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF-ATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vw~~~~~~~ 654 (706)
|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.
T Consensus 226 v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 226 VSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp EEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 9999999999999888765 47899999999987 5678899999999987654
No 123
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=2.9e-30 Score=260.54 Aligned_cols=341 Identities=12% Similarity=0.069 Sum_probs=262.9
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEEC--CCCeEEEEeec
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL--STLKCLRSWKG 100 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~~ 100 (706)
+.+++|++.++++...+ .|.+||..+++++..+..+.. +.+++|+|||++|++++.++.|.+||+ .+++.+.++.
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~- 219 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK- 219 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-
Confidence 34589999888887765 899999999999999984433 899999999999999999999999999 8999999988
Q ss_pred cCCCeEEEEECC----CCCEEEEecC-CCcEEEEECCCCeEEEEeeCC-----------CCcEEEEEEcCCCCceEEEEE
Q 005254 101 HDGPAIGMACHP----SGGLLATAGA-DRKVLVWDVDGGFCTHYFKGH-----------KGVVSSILFHPDTDKSLLFSG 164 (706)
Q Consensus 101 ~~~~v~~~~~s~----~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~l~~~ 164 (706)
+...+..++|+| ||++|++++. +++|.+||..+++++..+..+ ...+..+.++|++. .++++.
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~-~~~vs~ 298 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP-EFIVNV 298 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS-EEEEEE
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCC-EEEEEE
Confidence 456789999999 9999999874 899999999999998887642 23789999999865 467788
Q ss_pred ecCCeEEEEECCCCeeEE--EeecccceEEEEEEecCCCEEEEEe-CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCC
Q 005254 165 SDDATVRVWDLLAKKCVA--TLDKHFSRVTSMAITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPG 241 (706)
Q Consensus 165 ~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (706)
..++.|.+||+.+.+.+. .+ .+...+..++|+|+|+++++++ .++.|.+||..+++....++...
T Consensus 299 ~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~----------- 366 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK----------- 366 (543)
T ss_dssp TTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS-----------
T ss_pred CCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC-----------
Confidence 889999999998866543 33 3556788899999999877665 57899999998776544332100
Q ss_pred CCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEE
Q 005254 242 SAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC 321 (706)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 321 (706)
T Consensus 367 -------------------------------------------------------------------------------- 366 (543)
T 1nir_A 367 -------------------------------------------------------------------------------- 366 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEE
Q 005254 322 VTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLC 401 (706)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~ 401 (706)
..|.+....
T Consensus 367 -----------------------------------------------------------------------~ph~g~g~~ 375 (543)
T 1nir_A 367 -----------------------------------------------------------------------TPHPGRGAN 375 (543)
T ss_dssp -----------------------------------------------------------------------SBCCTTCEE
T ss_pred -----------------------------------------------------------------------CCCCCCCcc
Confidence 001110011
Q ss_pred eeeeeecCCCEEEEEee-CCCcEEEEeCCC-------ceEEEEEeCCCcCeEEEEEecCCCeEEEEec-------CCCeE
Q 005254 402 LDTCALSSGKILIVTGS-KDNSVRLWDSES-------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-------SDHTI 466 (706)
Q Consensus 402 ~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~d~~i 466 (706)
+ +.|++..+++++. .|++|.+||..+ .+.++.+..|...+..++++|+++ .|++++ .+++|
T Consensus 376 ~---~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~-~l~v~~~~~~~~~~~~~v 451 (543)
T 1nir_A 376 F---VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS-HLYVDTTFNPDARISQSV 451 (543)
T ss_dssp E---EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCC-EEEECCTTCSSHHHHTCE
T ss_pred c---CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCC-cEEEecCCCCCcccCceE
Confidence 1 3466556577765 689999999998 899999999998999999999998 677765 27899
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-----CCCcEEEEeCCCccEEEEEeec
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-----QDRTACVWRLPDLVSVVTFRGH 535 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~ 535 (706)
.+||+.+.+...+. .......-+..+...+..+.|+|+|+.++++. .++.|.|||.++++++..++.+
T Consensus 452 ~v~d~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 452 AVFDLKNLDAKYQV-LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp EEEETTCTTSCCEE-ECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EEEECCCCCCCeEE-eechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 99999876521000 00000000134567899999999999998763 4799999999999999988854
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=4.6e-30 Score=259.10 Aligned_cols=336 Identities=13% Similarity=0.080 Sum_probs=261.4
Q ss_pred EEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC--CCCeEEEEeeCCC
Q 005254 67 ALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV--DGGFCTHYFKGHK 144 (706)
Q Consensus 67 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~--~~~~~~~~~~~~~ 144 (706)
+++|++.++++++.++.|.+||..+++++.++..+.. +..++|+|||++|++++.|+.|.+||+ .+++.+..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4899999999999999999999999999999984433 889999999999999999999999999 8899888887 55
Q ss_pred CcEEEEEEcC----CCCceEEEEEe-cCCeEEEEECCCCeeEEEeecc----------cc-eEEEEEEecCCCE-EEEEe
Q 005254 145 GVVSSILFHP----DTDKSLLFSGS-DDATVRVWDLLAKKCVATLDKH----------FS-RVTSMAITSDGST-LISAG 207 (706)
Q Consensus 145 ~~v~~~~~~~----~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~----------~~-~v~~~~~~~~~~~-l~~~~ 207 (706)
..+..++|+| +++. +++++ .+++|.+||..+++++..+..+ .. .+.++.++|++.. +++..
T Consensus 222 ~~p~~va~sp~~~~dg~~--l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRY--TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp SEEEEEEECCSTTCTTTE--EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCcceEEeCCCcCCCCCE--EEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 6789999999 9886 66666 5899999999999998887642 22 6889999997765 45556
Q ss_pred CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEE
Q 005254 208 RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 208 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
.++.|.+||+.+.+.+...
T Consensus 300 ~~g~i~vvd~~~~~~l~~~------------------------------------------------------------- 318 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLTVT------------------------------------------------------------- 318 (543)
T ss_dssp TTTEEEEEECTTSSSCEEE-------------------------------------------------------------
T ss_pred CCCeEEEEEecCCCcceeE-------------------------------------------------------------
Confidence 7888999988754321100
Q ss_pred eeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCc
Q 005254 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367 (706)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 367 (706)
T Consensus 319 -------------------------------------------------------------------------------- 318 (543)
T 1nir_A 319 -------------------------------------------------------------------------------- 318 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC----CCcC
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG----HMGA 443 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~ 443 (706)
.+. +...+..+. ++|+++.+++++..+++|.+||..+++++..+.. |.+.
T Consensus 319 -----------------------~i~-~~~~~~~~~--~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 319 -----------------------SIG-AAPFLHDGG--WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp -----------------------EEE-CCSSCCCEE--ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred -----------------------Eec-cCcCccCce--ECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 000 001111222 7788888677777789999999999998887764 4443
Q ss_pred eEEEEEecCCCeEEEEec-CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-------CC
Q 005254 444 VGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-------QD 515 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~d 515 (706)
...+ ++|++..+++++. .|++|.+|++..... .....+....+..+...+..++++|++++|++++ .+
T Consensus 373 g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~---~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~ 448 (543)
T 1nir_A 373 GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH---PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARIS 448 (543)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC---TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHH
T ss_pred Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCC---chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccC
Confidence 3333 5777555777775 689999999976321 1122446777888888889999999999999987 26
Q ss_pred CcEEEEeCCCccEE-EEE--------eecCCcEEEEEEccCCCEEEEec-----CCCcEEEEEcCCCceEEEEeec
Q 005254 516 RTACVWRLPDLVSV-VTF--------RGHKRGIWSVEFSPVDQVVITAS-----GDKTIKIWSISDGSCLKTFEGH 577 (706)
Q Consensus 516 g~i~i~d~~~~~~~-~~~--------~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~ 577 (706)
++|.+||+.+++.. ..+ ..+...+..++|+|+|+.++++. .|+.|.|||..+++++.+++.+
T Consensus 449 ~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 449 QSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp TCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred ceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 79999999998876 443 34577899999999999988762 4799999999999999998753
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.6e-32 Score=268.24 Aligned_cols=287 Identities=15% Similarity=0.061 Sum_probs=184.5
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE-----EeeCCCCcEEEEEEcCC------CCceEEEEEecCCe
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH-----YFKGHKGVVSSILFHPD------TDKSLLFSGSDDAT 169 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~-----~~~~~~~~v~~~~~~~~------~~~~~l~~~~~dg~ 169 (706)
|...+....+++++.+||+++.|++|++||.++++... .+.+|.+.|.+++|+|. .+..+|++++.|++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 55555666777888999999999999999999886543 35789999999999982 12346999999999
Q ss_pred EEEEECCCCeeEEEeecccceEEEEEEecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccc
Q 005254 170 VRVWDLLAKKCVATLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFL 248 (706)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (706)
|++||+.++..+..+..|...+.+++|+|++. +|++++.||.|++||+.+++...........
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~---------------- 231 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV---------------- 231 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C----------------
T ss_pred EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc----------------
Confidence 99999999988888889999999999999875 7999999999999999876544332110000
Q ss_pred ccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCce
Q 005254 249 SSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQL 328 (706)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 328 (706)
T Consensus 232 -------------------------------------------------------------------------------- 231 (393)
T 4gq1_A 232 -------------------------------------------------------------------------------- 231 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeee-
Q 005254 329 LLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCAL- 407 (706)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~- 407 (706)
+...+... +...........+|...+.++. +.
T Consensus 232 -----------------------~~~~~~s~----------------------~~~~~~~~~~~~~~~~~v~~v~--~~~ 264 (393)
T 4gq1_A 232 -----------------------KNPWLLTL----------------------NTLPLVNTCHSSGIASSLANVR--WIG 264 (393)
T ss_dssp -----------------------SCCCSEEE----------------------ESGGGC------CCSSSCSEEE--EET
T ss_pred -----------------------ccceEEec----------------------ccccceeeeecccccccceeee--eec
Confidence 00000000 0000000112234555666665 55
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccccee
Q 005254 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK 487 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 487 (706)
+++.. +++++.|+.+++||+..++....+..+...+..+.+.|+.+ .+.
T Consensus 265 ~dg~~-l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~----------------------------- 313 (393)
T 4gq1_A 265 SDGSG-ILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ-GIS----------------------------- 313 (393)
T ss_dssp TTTCE-EEEECTTSEEEEEEC-------------------CCSCSEE-EEC-----------------------------
T ss_pred CCCCE-EEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccc-ccc-----------------------------
Confidence 45555 99999999999999999888777777777777777777633 110
Q ss_pred EEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 488 AVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 488 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
.+...+..+.+.+ ++.++++|+.||.|++||+.+++....+..|..+|.+++|+|||++||+++.+| +.+|.+.
T Consensus 314 ----~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 314 ----LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ----SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ----ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 0111122222223 455777888999999999999999888889999999999999999999998877 7777653
No 126
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-32 Score=288.61 Aligned_cols=250 Identities=24% Similarity=0.379 Sum_probs=217.5
Q ss_pred EeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC--CceEEEEEeCCCcCeEEEEEecC--CCeEEEEecCCCe
Q 005254 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRCCVGVGTGHMGAVGAVAFSKK--LQNFLVSGSSDHT 465 (706)
Q Consensus 390 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~ 465 (706)
..+.+|.+.|.++. ++|+++. +++|+.||.|++||+. +++.+..+.+|...|.+++|+|+ +. ++++++.||.
T Consensus 3 ~~l~gH~~~V~~l~--~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~-~l~s~s~Dg~ 78 (753)
T 3jro_A 3 VIANAHNELIHDAV--LDYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGK 78 (753)
T ss_dssp -----CCCCEEEEC--CCSSSCC-EEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCS-EEEEEETTSC
T ss_pred eecccCcceeEEEE--ECCCCCe-EEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCC-EEEEEeCCCe
Confidence 35788999999998 8888887 9999999999999998 56777888999999999999987 65 8999999999
Q ss_pred EEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCc--cEEEEEeecCCcEEE
Q 005254 466 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGIWS 541 (706)
Q Consensus 466 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~ 541 (706)
|++||+..+. .........|...|++++|+|+ ++++++|+.||.|++||+.++ .....+.+|...|.+
T Consensus 79 I~vwd~~~~~--------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~ 150 (753)
T 3jro_A 79 VLIWKEENGR--------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150 (753)
T ss_dssp EEEEEEETTE--------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred EEEEECCCCc--------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence 9999998641 2245566779999999999999 999999999999999999877 345567789999999
Q ss_pred EEEcc-------------CCCEEEEecCCCcEEEEEcCCC----ceEEEEeecccCEEEEEEEeC---CCEEEEEeCCCC
Q 005254 542 VEFSP-------------VDQVVITASGDKTIKIWSISDG----SCLKTFEGHTSSVLRASFLTR---GAQIVSCGADGL 601 (706)
Q Consensus 542 ~~~s~-------------~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~ 601 (706)
++|+| ++.+|++++.||.|++||+.++ .+...+.+|...|++++|+|+ +++|++++.||.
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence 99999 5899999999999999999877 556778889999999999999 899999999999
Q ss_pred EEEEECCCCe-----EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 602 VKLWTVRTGE-----CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 602 i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
|++||+.+++ .+.....|.+.|++++|+|++++|++++.||.|++|++.+
T Consensus 231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9999998874 3333446889999999999999999999999999999985
No 127
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-32 Score=289.99 Aligned_cols=255 Identities=20% Similarity=0.339 Sum_probs=213.6
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECC--CCeEEEEeeccCCCeEEEEECCC--CCEEEEecCCCcEEE
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS--TLKCLRSWKGHDGPAIGMACHPS--GGLLATAGADRKVLV 128 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~v 128 (706)
+..+.+|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+.+|..+|.+++|+|+ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999998 66788899999999999999998 999999999999999
Q ss_pred EECCCCe--EEEEeeCCCCcEEEEEEcCC--CCceEEEEEecCCeEEEEECCCCe--eEEEeecccceEEEEEEec----
Q 005254 129 WDVDGGF--CTHYFKGHKGVVSSILFHPD--TDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITS---- 198 (706)
Q Consensus 129 w~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~---- 198 (706)
||+.+++ .+..+.+|...|.+++|+|+ ++. +++|+.||.|++||+.++. ....+.+|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~--l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL--LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE--EEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCE--EEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence 9999987 67778889999999999998 554 9999999999999998773 4456678999999999999
Q ss_pred ---------CCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEE
Q 005254 199 ---------DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 269 (706)
Q Consensus 199 ---------~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (706)
++.++++++.||.|++||++++....
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~--------------------------------------------- 194 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------------------------------------------- 194 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEE---------------------------------------------
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccc---------------------------------------------
Confidence 58899999999999999976542111
Q ss_pred ecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEe
Q 005254 270 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL 349 (706)
Q Consensus 270 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (706)
.....+
T Consensus 195 --------------------------------------------------------------------------~~~~~~ 200 (753)
T 3jro_A 195 --------------------------------------------------------------------------VLESTL 200 (753)
T ss_dssp --------------------------------------------------------------------------EEEEEE
T ss_pred --------------------------------------------------------------------------eeeeee
Confidence 111334
Q ss_pred cccCceeeEeeEeCCC--CcEEEEEecCCcEEEEeCCCce-----eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 350 VGYNEEILDLKFLGEE--EQYLAVATNIEQVQVYDLSSMS-----CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 350 ~~~~~~v~~~~~~~~~--~~~l~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
.+|...+.+++|.|.. +.++++++.+|.|++||+.++. .......|...+.++. ++|++.. +++++.||.
T Consensus 201 ~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~--~spdg~~-l~s~s~Dg~ 277 (753)
T 3jro_A 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS--WSLSGNV-LALSGGDNK 277 (753)
T ss_dssp CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEE--ECTTTCC-EEEECSSSC
T ss_pred cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEE--EcCCCCE-EEEEcCCCE
Confidence 4577888999998865 8999999999999999998864 3334455788888888 8888887 999999999
Q ss_pred EEEEeCCCc
Q 005254 423 VRLWDSESR 431 (706)
Q Consensus 423 i~i~d~~~~ 431 (706)
|++|++..+
T Consensus 278 I~vwd~~~~ 286 (753)
T 3jro_A 278 VTLWKENLE 286 (753)
T ss_dssp EECCBCCSS
T ss_pred EEEEecCCC
Confidence 999999854
No 128
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.9e-31 Score=260.62 Aligned_cols=233 Identities=12% Similarity=0.120 Sum_probs=176.5
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEE-----EEeCCCcCeEEEEEec--------CCCeEEEEecCCCeEEEEEec
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVG-----VGTGHMGAVGAVAFSK--------KLQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~~l~~~~~d~~i~i~~~~ 472 (706)
..+....++++++.|++|++||..++.... .+.+|.+.|.+++|+| +++ +|++++.|++|++||+.
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLT 174 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECC
Confidence 445555569999999999999999886543 2568999999999998 554 99999999999999997
Q ss_pred CCCCCCCcccccceeEEEeecCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCccEEEEE-------------------
Q 005254 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSVVTF------------------- 532 (706)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~------------------- 532 (706)
... .......|..++.+++|+|++ .+|++++.||.|++||+.+++.....
T Consensus 175 ~~~----------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 175 DEG----------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TTE----------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CCc----------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 643 556677889999999999987 48999999999999999877544322
Q ss_pred ------eecCCcEEEEEEc-cCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEe-----------------
Q 005254 533 ------RGHKRGIWSVEFS-PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT----------------- 588 (706)
Q Consensus 533 ------~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~----------------- 588 (706)
.+|...+.++.|+ |+++.|++++.|+++++||+..++....+..|...+..+.+.|
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 3567788899987 7999999999999999999988877777666655544443333
Q ss_pred ---CCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 589 ---RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 589 ---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
++.++++|+.||.|++||+.+++++..+..|..+|.+++|+|||++|++++.|| +.+|++.
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 334678888999999999999999888889999999999999999999998776 6666653
No 129
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-31 Score=253.04 Aligned_cols=212 Identities=10% Similarity=0.091 Sum_probs=161.8
Q ss_pred EEEEeCCCceeeEeee-CCcceEEEeeeeeec--CCCEEEEEeeCCCcEEEEeCCCceEEEEEe-CCCcCeEEEEEecCC
Q 005254 378 VQVYDLSSMSCSYVLA-GHSEIVLCLDTCALS--SGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKL 453 (706)
Q Consensus 378 i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~ 453 (706)
+.+|+..+.+....+. +|...+.++. +.| +++. +++++.||.|++||+.+++.+.... .+...+.+++|+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg 182 (343)
T 3lrv_A 106 ITILDSKTNKVLREIEVDSANEIIYMY--GHNEVNTEY-FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS 182 (343)
T ss_dssp EEEEETTTCCEEEEEECCCSSCEEEEE--CCC---CCE-EEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS
T ss_pred eEEeecCCcceeEEeecCCCCCEEEEE--cCCCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC
Confidence 3344444444333333 5667788887 777 7776 9999999999999999998877664 455689999999998
Q ss_pred CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee-cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEE
Q 005254 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 532 (706)
Q Consensus 454 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 532 (706)
. ++++|+.||.|++||++.... ....+.. |..+|++++|+|++.+|++++ ++.|++||+++++....+
T Consensus 183 ~-~lasg~~dg~i~iwd~~~~~~---------~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 183 L-LLALYSPDGILDVYNLSSPDQ---------ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY 251 (343)
T ss_dssp C-EEEEECTTSCEEEEESSCTTS---------CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS
T ss_pred C-EEEEEcCCCEEEEEECCCCCC---------CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee
Confidence 7 899999999999999987641 1134455 899999999999999999999 459999999988765544
Q ss_pred ee---cCCcEE--EEEEccCCCEEEEecC-CCcEEEEEcCCCceEEEEeecccCEEEEEEEe---CCCEEEEEeCCCCEE
Q 005254 533 RG---HKRGIW--SVEFSPVDQVVITASG-DKTIKIWSISDGSCLKTFEGHTSSVLRASFLT---RGAQIVSCGADGLVK 603 (706)
Q Consensus 533 ~~---~~~~v~--~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~ 603 (706)
.. |...+. +++|+|++++|++++. |+.|++|++.+....... .++..+.|.+ +.+.+++++.||.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 327 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIA 327 (343)
T ss_dssp CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEE
T ss_pred cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceE
Confidence 43 333343 6999999999999988 999999999766543333 5677889988 889999999999998
Q ss_pred EEEC
Q 005254 604 LWTV 607 (706)
Q Consensus 604 iwd~ 607 (706)
++-.
T Consensus 328 ~~~~ 331 (343)
T 3lrv_A 328 AILK 331 (343)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8754
No 130
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-31 Score=256.97 Aligned_cols=262 Identities=11% Similarity=0.050 Sum_probs=207.6
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC---------CceEEE
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE---------SRCCVG 435 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~ 435 (706)
++.++++++.||.|++||+.+++....+. ...+.++. +.|. +++++.|+++++|+.. +++.+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~--~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGG--EHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTC--CCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeee--eCCc----eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 67789999999999999999988877766 34454444 4444 8999999999999665 455444
Q ss_pred EEe-CCCcCeEEEEEec--CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE-eecCcceEEEEEcCCCCEEEE
Q 005254 436 VGT-GHMGAVGAVAFSK--KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 436 ~~~-~~~~~v~~~~~~~--~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~ 511 (706)
... .|...|.+++|+| +++ ++++++.||.|++||+.... ..... ..+...+++++|+|++.+|++
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~----------~~~~~~~~~~~~i~~~~~~pdg~~las 187 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDS----------QYIVHSAKSDVEYSSGVLHKDSLLLAL 187 (343)
T ss_dssp EEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSC----------EEEEECCCSSCCCCEEEECTTSCEEEE
T ss_pred EeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCc----------EEEEEecCCCCceEEEEECCCCCEEEE
Confidence 443 6778899999999 877 89999999999999998653 22222 345567999999999999999
Q ss_pred eeCCCcEEEEeCCCccEE-EEEee-cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee---cccCE--EEE
Q 005254 512 GSQDRTACVWRLPDLVSV-VTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG---HTSSV--LRA 584 (706)
Q Consensus 512 ~~~dg~i~i~d~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i--~~~ 584 (706)
|+.||.|++||+++++.. ..+.. |..+|++++|+|++.+|++++ |+.|++||+++++.+..+.. |...+ .++
T Consensus 188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (343)
T 3lrv_A 188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTY 266 (343)
T ss_dssp ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEE
T ss_pred EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEE
Confidence 999999999999999887 78888 999999999999999999999 55999999998877654443 33333 369
Q ss_pred EEEeCCCEEEEEeC-CCCEEEEECCCCeEEEEeccCCCcEEEEEEcC---CCCEEEEEeCCCcEEEEECC
Q 005254 585 SFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHEDKIWALAVGK---KTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 585 ~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vw~~~ 650 (706)
+|+|+|++|++++. |+.+++|++.+....... .++..+.|++ +.+.+++++.||.+.++-..
T Consensus 267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 267 DIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred EECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 99999999999998 999999999765433222 5677888888 88889999999998887543
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=9.2e-28 Score=257.08 Aligned_cols=355 Identities=10% Similarity=0.068 Sum_probs=248.8
Q ss_pred CccEEEEEEccCCCEEEEEec-cC-----eEEEEECCCCeEEEEeeccCCC------------------------eEEEE
Q 005254 60 SDTITALALSPDDKLLFSSGH-SR-----EIRVWDLSTLKCLRSWKGHDGP------------------------AIGMA 109 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~~------------------------v~~~~ 109 (706)
...|.+++|||||++|++++. |+ .|.+||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457899999999999999988 87 8999999999887777655433 78999
Q ss_pred ECCCCCEEEEecCCCcEEEEECCCCe--EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecc
Q 005254 110 CHPSGGLLATAGADRKVLVWDVDGGF--CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH 187 (706)
Q Consensus 110 ~s~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 187 (706)
|||||++|++++. +.|++||+.++. ....+..|...+..++|+|||+. ++.++ ++.|++||+.+++.......+
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~--la~~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGF--VSFIR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSE--EEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCE--EEEEe-CCcEEEEecCCCCEEEeccCC
Confidence 9999999999886 999999999883 34556678889999999999986 66665 568999999988776554433
Q ss_pred cce----------------EEEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccc
Q 005254 188 FSR----------------VTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250 (706)
Q Consensus 188 ~~~----------------v~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (706)
... +..++|+|||++|++++.|+ .+..|+..
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~-------------------------------- 239 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRY-------------------------------- 239 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEE--------------------------------
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecC--------------------------------
Confidence 332 36788999998888876543 11111100
Q ss_pred ccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEE
Q 005254 251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (706)
T Consensus 240 -------------------------------------------------------------------------------- 239 (741)
T 2ecf_A 240 -------------------------------------------------------------------------------- 239 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCC
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG 410 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 410 (706)
...........+. +...+
T Consensus 240 ------------------------------------------------------------~~~p~~~~~~~~~--~~~~g 257 (741)
T 2ecf_A 240 ------------------------------------------------------------EVYADRTDVIEQR--YPAAG 257 (741)
T ss_dssp ------------------------------------------------------------EECSSCEEEEEEE--CCBTT
T ss_pred ------------------------------------------------------------CCCCCcccceEee--cCCCC
Confidence 0000000000110 11111
Q ss_pred CEEEEEeeCCCcEEEEeCCC-ceEEEEEe--CCCcCeEEEEEecCCCeEEEEec----CCCeEEEEEecCCCCCCCcccc
Q 005254 411 KILIVTGSKDNSVRLWDSES-RCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGS----SDHTIKVWSFDGLSDDAEQPMN 483 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~----~d~~i~i~~~~~~~~~~~~~~~ 483 (706)
.. .....|++||+.+ ++...... .+...+..++| |+|+.++++.. .+..|.+||+.++.
T Consensus 258 ~~-----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-------- 323 (741)
T 2ecf_A 258 DA-----NVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-------- 323 (741)
T ss_dssp SC-----CCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC--------
T ss_pred CC-----CCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc--------
Confidence 00 0012466677776 66544332 36778899999 99984444332 36789999987653
Q ss_pred cceeEEEeecCc----ceEEEEEcCCCCEEEEeeCCCcEEEEeCC-CccEEEEEeecCCcEEEE-EEccCCCEEEE-ecC
Q 005254 484 LKAKAVVAAHGK----DINSLAVAPNDSLVCTGSQDRTACVWRLP-DLVSVVTFRGHKRGIWSV-EFSPVDQVVIT-ASG 556 (706)
Q Consensus 484 ~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~-~~~ 556 (706)
.......+.. .+..++|+|||+++++++.+|.++||.+. ++. ...+..|...+..+ .|+|+++.|+. ++.
T Consensus 324 --~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~ 400 (741)
T 2ecf_A 324 --QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGI 400 (741)
T ss_dssp --EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECS
T ss_pred --eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeC
Confidence 3333333332 45689999999999999999988888765 344 77777788888887 59999987754 444
Q ss_pred CC--cEEEEEcCC-CceEEEEeecccCEEEEEEEeCCCEEEEEeCC----CCEEEEECCCC
Q 005254 557 DK--TIKIWSISD-GSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD----GLVKLWTVRTG 610 (706)
Q Consensus 557 dg--~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~ 610 (706)
++ .+++|++.. +.....+.. ...+..+.|+|||++|+....+ ..+.+|+...+
T Consensus 401 ~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 401 ESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp SCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 55 899999864 555666664 5678899999999998876554 46889987543
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=4e-27 Score=252.13 Aligned_cols=318 Identities=14% Similarity=0.127 Sum_probs=234.4
Q ss_pred ceEEcCCCCEEEEeeC--C-----eEEEEEccCCeEEEeecCCC------------------------ccEEEEEEccCC
Q 005254 24 PLVVSSDGSFIACACG--E-----SINIVDLSNASIKSTIEGGS------------------------DTITALALSPDD 72 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~--~-----~i~i~d~~~~~~~~~l~~~~------------------------~~i~~l~~s~~~ 72 (706)
+++|||||++|++++. + .|.+||+.+++....+..+. ..|.+++|||||
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg 120 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDA 120 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTS
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCC
Confidence 6999999999999885 3 69999999998777666543 238899999999
Q ss_pred CEEEEEeccCeEEEEECCCCe--EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCc----
Q 005254 73 KLLFSSGHSREIRVWDLSTLK--CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV---- 146 (706)
Q Consensus 73 ~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~---- 146 (706)
++|++++. +.|.+||+.++. ....+..|...+.+++|||||++||+++ ++.|++||+.+++.......+...
T Consensus 121 ~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g 198 (741)
T 2ecf_A 121 QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNG 198 (741)
T ss_dssp SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEES
T ss_pred CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceecc
Confidence 99999886 899999999883 4556777888999999999999999987 468999999998877655544443
Q ss_pred ------------EEEEEEcCCCCceEEEEEecCC---------------------------------eEEEEECCC-Cee
Q 005254 147 ------------VSSILFHPDTDKSLLFSGSDDA---------------------------------TVRVWDLLA-KKC 180 (706)
Q Consensus 147 ------------v~~~~~~~~~~~~~l~~~~~dg---------------------------------~i~vwd~~~-~~~ 180 (706)
+..++|+|||+. |++++.|+ .|.+||+.+ ++.
T Consensus 199 ~~~~v~~~~~~~~~~~~~SpDg~~--l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 276 (741)
T 2ecf_A 199 IAEFVADEEMDRHTGYWWAPDDSA--IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT 276 (741)
T ss_dssp CCCHHHHHHSCCCCSEEECTTSSC--EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC
T ss_pred ccceeeeeccccccceEECCCCCE--EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce
Confidence 477999999987 77776654 788899988 776
Q ss_pred EEEee--cccceEEEEEEecCCCEEEEEeC-----CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccc
Q 005254 181 VATLD--KHFSRVTSMAITSDGSTLISAGR-----DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQ 253 (706)
Q Consensus 181 ~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (706)
..... .|...+..++| |||++|++++. +..|++||+.+++....
T Consensus 277 ~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~---------------------------- 327 (741)
T 2ecf_A 277 QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVL---------------------------- 327 (741)
T ss_dssp EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEE----------------------------
T ss_pred EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEE----------------------------
Confidence 54433 47778999999 99998887754 34566666654432211
Q ss_pred hhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEe
Q 005254 254 QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTT 333 (706)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 333 (706)
T Consensus 328 -------------------------------------------------------------------------------- 327 (741)
T 2ecf_A 328 -------------------------------------------------------------------------------- 327 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcc----eEEEeeeeeecC
Q 005254 334 VEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE----IVLCLDTCALSS 409 (706)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~ 409 (706)
+..+.. .+..+. ++|+
T Consensus 328 ----------------------------------------------------------~~~~~~~~~~~~~~~~--~spd 347 (741)
T 2ecf_A 328 ----------------------------------------------------------AHETSPTWVPLHNSLR--FLDD 347 (741)
T ss_dssp ----------------------------------------------------------EEEECSSCCCCCSCCE--ECTT
T ss_pred ----------------------------------------------------------EEcCCCCcCCcCCceE--ECCC
Confidence 100000 111222 7788
Q ss_pred CCEEEEEeeCCCcEEEEeCC-CceEEEEEeCCCcCeEEE-EEecCCCeEEEEecCCC--eEEEEEecCCCCCCCcccccc
Q 005254 410 GKILIVTGSKDNSVRLWDSE-SRCCVGVGTGHMGAVGAV-AFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 410 ~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~ 485 (706)
++ ++++++.+|.+++|.+. ++. ...+..+...+..+ .|+|+++.++++++.++ .+++|++.....
T Consensus 348 g~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~--------- 416 (741)
T 2ecf_A 348 GS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG--------- 416 (741)
T ss_dssp SC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC---------
T ss_pred Ce-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC---------
Confidence 88 58888889987777665 344 67777788888887 59999986666777666 899999874221
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeCC----CcEEEEeCCCc
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQD----RTACVWRLPDL 526 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~ 526 (706)
....+.. ...+..++|+|||++|+....+ ..+.+++....
T Consensus 417 ~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 417 QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 1222222 4567899999999998876544 46888887543
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=4.6e-27 Score=230.55 Aligned_cols=223 Identities=10% Similarity=0.049 Sum_probs=177.3
Q ss_pred eeCCcceEEEeeeeeecCCCEEEEEeeCCC---cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCe--E
Q 005254 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDN---SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT--I 466 (706)
Q Consensus 392 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i 466 (706)
+..|...+.++. ++|+++. +++++.++ .|++||+.+++.. .+..+...+.+++|+|+|+.++++++.++. |
T Consensus 174 l~~~~~~v~~~~--~Spdg~~-la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 174 VHRSPQPLMSPA--WSPDGSK-LAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp EEEESSCEEEEE--ECTTSSE-EEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred EeCCCCcceeeE--EcCCCCE-EEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence 334555666666 8888887 67776664 8999999998775 456678899999999999855557776654 8
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CC--cEEEEeCCCccEEEEEeecCCcEEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSVVTFRGHKRGIWSVE 543 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~ 543 (706)
++||+..+ ....+..+...+.+++|+|||++|++++. ++ .|++||+.+++. ..+..+...+.+++
T Consensus 250 ~~~d~~~~-----------~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~ 317 (415)
T 2hqs_A 250 YVMDLASG-----------QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDAD 317 (415)
T ss_dssp EEEETTTC-----------CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEE
T ss_pred EEEECCCC-----------CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeE
Confidence 88998764 23445567788999999999999998876 44 677889887764 34555777899999
Q ss_pred EccCCCEEEEecCC---CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC---CEEEEECCCCeEEEEec
Q 005254 544 FSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRTGECIATYD 617 (706)
Q Consensus 544 ~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 617 (706)
|+|+|++|++++.+ ..|++||+.+++.. .+..+. .+..++|+|||++|++++.++ .|++||+. ++....+.
T Consensus 318 ~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~ 394 (415)
T 2hqs_A 318 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP 394 (415)
T ss_dssp ECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECC
T ss_pred ECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEee
Confidence 99999999988764 58999999988774 455454 899999999999999988877 79999986 66677888
Q ss_pred cCCCcEEEEEEcCCCC
Q 005254 618 KHEDKIWALAVGKKTE 633 (706)
Q Consensus 618 ~~~~~v~~~~~s~~~~ 633 (706)
.|.+.|.+++|+|...
T Consensus 395 ~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 395 ATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CSSSEEEEEEECCCCC
T ss_pred CCCCCCcCCccccccc
Confidence 9999999999999754
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=7.8e-27 Score=228.95 Aligned_cols=301 Identities=13% Similarity=0.043 Sum_probs=225.5
Q ss_pred CCeEEEEECCCCC-EEEEec----CCC----cEEEEEC--CCCeEE--EEeeCCCCcEEEEEEcCC--------------
Q 005254 103 GPAIGMACHPSGG-LLATAG----ADR----KVLVWDV--DGGFCT--HYFKGHKGVVSSILFHPD-------------- 155 (706)
Q Consensus 103 ~~v~~~~~s~~~~-~l~~~~----~d~----~i~vw~~--~~~~~~--~~~~~~~~~v~~~~~~~~-------------- 155 (706)
..+....|++.+. ++++|+ .+| .+++||+ .+++.+ ..+.+|...+..+++++.
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4667778888775 565765 467 8999999 898877 457888888888777651
Q ss_pred CCceEEEEEecC------CeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC---EEEEEeCCCCcceeee
Q 005254 156 TDKSLLFSGSDD------ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK---VVNLWDLRDYSCKLTV 226 (706)
Q Consensus 156 ~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~w~~~~~~~~~~~ 226 (706)
+.. ++.++.+ +.|++||+. +.....+..|...+.+++|+|+|++|++++.++ .|++||+.+++..
T Consensus 143 ~~~--l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~--- 216 (415)
T 2hqs_A 143 RTR--IAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--- 216 (415)
T ss_dssp TCE--EEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred CCE--EEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---
Confidence 344 4444443 799999997 455677778999999999999999999998775 7888877654321
Q ss_pred cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccc
Q 005254 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (706)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (706)
T Consensus 217 -------------------------------------------------------------------------------- 216 (415)
T 2hqs_A 217 -------------------------------------------------------------------------------- 216 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
T Consensus 217 -------------------------------------------------------------------------------- 216 (415)
T 2hqs_A 217 -------------------------------------------------------------------------------- 216 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc--EEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS--VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 464 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 464 (706)
.+..+...+.++. ++|+++.++++++.++. |++||+.+++. ..+..+...+.+++|+|+++.+++++..++
T Consensus 217 ----~l~~~~~~~~~~~--~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g 289 (415)
T 2hqs_A 217 ----QVASFPRHNGAPA--FSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAG 289 (415)
T ss_dssp ----EEECCSSCEEEEE--ECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred ----EeecCCCcccCEE--EcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCC
Confidence 1122233444555 78888875557766654 99999998876 456778889999999999984444443455
Q ss_pred --eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC---CcEEEEeCCCccEEEEEeecCCcE
Q 005254 465 --TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVVTFRGHKRGI 539 (706)
Q Consensus 465 --~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v 539 (706)
.|.+||+..+. ...+..+...+.+++|+|||++|++++.+ ..|++||+.+++.. .+..+. .+
T Consensus 290 ~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~ 356 (415)
T 2hqs_A 290 RPQVYKVNINGGA-----------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LD 356 (415)
T ss_dssp SCEEEEEETTSSC-----------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SC
T ss_pred CcEEEEEECCCCC-----------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-Cc
Confidence 56666766542 22233456678899999999999988764 58999999988764 455554 89
Q ss_pred EEEEEccCCCEEEEecCCC---cEEEEEcCCCceEEEEeecccCEEEEEEEeCC
Q 005254 540 WSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~ 590 (706)
.+++|+|+|++|++++.++ .|++||+. ++....+..|.+.|.+++|+|.-
T Consensus 357 ~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 357 ETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred CCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 9999999999999988877 79999986 66677888899999999999964
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.96 E-value=2e-27 Score=253.84 Aligned_cols=359 Identities=9% Similarity=0.052 Sum_probs=239.9
Q ss_pred cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCC---CeEEEEECCCCCEEEEecCC---------CcEEEE
Q 005254 62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG---PAIGMACHPSGGLLATAGAD---------RKVLVW 129 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d---------~~i~vw 129 (706)
.+.+++|+|||+++++ +.||.|++||+.+++....+..|.. .|.+++|||||++|++++.+ +.|.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999998876 7899999999999998888887765 49999999999999998764 788899
Q ss_pred ECCCCeEEEEee---CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceE---------------
Q 005254 130 DVDGGFCTHYFK---GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRV--------------- 191 (706)
Q Consensus 130 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v--------------- 191 (706)
|+.+++. ..+. .|...+..++|+|||+. ++.++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~--la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQ--LIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTC--EEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred ECCCCce-EeccCCccccccccccEECCCCCE--EEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEec
Confidence 9998875 3333 34555889999999987 777765 789999999988776655443333
Q ss_pred ---EEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEE
Q 005254 192 ---TSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 267 (706)
Q Consensus 192 ---~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (706)
.+++|+|||+.|++++.++ .+.+|++......
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 208 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS-------------------------------------------- 208 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS--------------------------------------------
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCc--------------------------------------------
Confidence 7899999999988887543 3444443210000
Q ss_pred EEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEee
Q 005254 268 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 347 (706)
Q Consensus 268 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (706)
T Consensus 209 -------------------------------------------------------------------------------- 208 (723)
T 1xfd_A 209 -------------------------------------------------------------------------------- 208 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
+...+..+. +.+++.. ..+..|++||
T Consensus 209 -----------------------------------------------~~~~~~~~~--~~~~G~~-----~~~~~l~~~d 234 (723)
T 1xfd_A 209 -----------------------------------------------IYPTVKPYH--YPKAGSE-----NPSISLHVIG 234 (723)
T ss_dssp -----------------------------------------------SSCCCEEEE--CCBTTSC-----CCEEEEEEEE
T ss_pred -----------------------------------------------CCCcceecc--CCCCCCC-----CCeeEEEEEE
Confidence 000011111 2222211 1223577777
Q ss_pred CCCceEEEEEeCC------CcCeEEEEEecCCCeEEEEec----CCCeEEEEEecCCCCCCCcccccceeEEEee-cCcc
Q 005254 428 SESRCCVGVGTGH------MGAVGAVAFSKKLQNFLVSGS----SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKD 496 (706)
Q Consensus 428 ~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~----~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 496 (706)
+.+++....+..+ ...+..++|+|+|+ ++++.. .+..|.+||+.++. ....... +...
T Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~g~----------~~~~~~~~~~~~ 303 (723)
T 1xfd_A 235 LNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATTGV----------CTKKHEDESEAW 303 (723)
T ss_dssp SSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTTCC----------EEEEEEEECSSC
T ss_pred CCCCceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCCCc----------ceEEEEeccCCE
Confidence 7776654444433 56788999999998 555543 34679999987653 2222222 2333
Q ss_pred e----EEEEEcCCCCEEEE--eeCCC------cEEEEe-CCCccE--EEEEeecCCcEEE-EEEccCCCEEEEecCC---
Q 005254 497 I----NSLAVAPNDSLVCT--GSQDR------TACVWR-LPDLVS--VVTFRGHKRGIWS-VEFSPVDQVVITASGD--- 557 (706)
Q Consensus 497 i----~~~~~s~~~~~l~~--~~~dg------~i~i~d-~~~~~~--~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d--- 557 (706)
+ ..++|+|||+.|+. +..++ .|.+|| ..++.. ...+..+...+.. ++|+||++.|+..+.+
T Consensus 304 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 383 (723)
T 1xfd_A 304 LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLP 383 (723)
T ss_dssp CCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCT
T ss_pred EeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCC
Confidence 3 37899999997775 44666 577777 344431 4444444445554 6999999999766554
Q ss_pred CcEEEEEcCCCc--eEEEEee---cccCEEEEEEEeCCCEEEEEeCC-C--CEEEEECCCCeEEE
Q 005254 558 KTIKIWSISDGS--CLKTFEG---HTSSVLRASFLTRGAQIVSCGAD-G--LVKLWTVRTGECIA 614 (706)
Q Consensus 558 g~i~iwd~~~~~--~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~ 614 (706)
+.+++|++.... ....+.. |...+..++|+|||++|+..... + ...+++..+++.+.
T Consensus 384 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~ 448 (723)
T 1xfd_A 384 RRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMF 448 (723)
T ss_dssp TCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEE
T ss_pred cceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEE
Confidence 789999986432 3333443 56678899999999988775432 2 33455665555443
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=1.7e-25 Score=237.99 Aligned_cols=353 Identities=12% Similarity=0.051 Sum_probs=231.1
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEE-EeecCCC-----------------ccEEEEEEccCCCEEEEEeccCeEE
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIK-STIEGGS-----------------DTITALALSPDDKLLFSSGHSREIR 85 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~-~~l~~~~-----------------~~i~~l~~s~~~~~l~s~~~d~~i~ 85 (706)
.+.|+ |+.+++..++.| +||+.+++.+ ..+..|. ..|.+++|||| +.++.+. ++.|+
T Consensus 30 ~~~w~--g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~ 104 (706)
T 2z3z_A 30 GLQWM--GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLV 104 (706)
T ss_dssp TCEEE--TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEE
T ss_pred CCcCc--CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEE
Confidence 47788 556666666678 9999999873 3333332 46999999999 6666554 58999
Q ss_pred EEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC-----CeEEEEeeCCCCc--------------
Q 005254 86 VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG-----GFCTHYFKGHKGV-------------- 146 (706)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~-------------- 146 (706)
+||+.+++... +..+...+.+++|||||++||++ .++.|++||+.+ ++.......+...
T Consensus 105 ~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~ 182 (706)
T 2z3z_A 105 GFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGI 182 (706)
T ss_dssp EEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTC
T ss_pred EEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCC
Confidence 99999987654 44467788999999999999995 679999999998 7766544444433
Q ss_pred EEEEEEcCCCCceEEEEEe---------------------------------cCCeEEEEECCCCeeEEEee--cccceE
Q 005254 147 VSSILFHPDTDKSLLFSGS---------------------------------DDATVRVWDLLAKKCVATLD--KHFSRV 191 (706)
Q Consensus 147 v~~~~~~~~~~~~~l~~~~---------------------------------~dg~i~vwd~~~~~~~~~~~--~~~~~v 191 (706)
+.+++|+|||+. |++++ .+..|++||+.+++...... .|...+
T Consensus 183 ~~~~~~SpDg~~--la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 260 (706)
T 2z3z_A 183 EKGTFWSPKGSC--LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFL 260 (706)
T ss_dssp CCSEEECTTSSE--EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEE
T ss_pred CceEEECCCCCE--EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeE
Confidence 489999999987 66665 45789999999888654432 466789
Q ss_pred EEEEEecCCCEEEEEeCCC-----EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceE
Q 005254 192 TSMAITSDGSTLISAGRDK-----VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 266 (706)
Q Consensus 192 ~~~~~~~~~~~l~~~~~dg-----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (706)
.+++|+|||++|++++.++ .|++||+.+++....+....
T Consensus 261 ~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~------------------------------------ 304 (706)
T 2z3z_A 261 TNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET------------------------------------ 304 (706)
T ss_dssp EEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE------------------------------------
T ss_pred eeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc------------------------------------
Confidence 9999999999999887665 77888876542111100000
Q ss_pred EEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEe
Q 005254 267 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS 346 (706)
Q Consensus 267 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (706)
T Consensus 305 -------------------------------------------------------------------------------- 304 (706)
T 2z3z_A 305 -------------------------------------------------------------------------------- 304 (706)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeec--CCCEEEEEeeCCCcEE
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS--SGKILIVTGSKDNSVR 424 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~l~~~~~dg~i~ 424 (706)
. ......+..+. ++| +++ +++++..++.++
T Consensus 305 ------------------~---------------------------~~~~~~~~~~~--~sp~~dg~-~l~~~~~~g~~~ 336 (706)
T 2z3z_A 305 ------------------D---------------------------KHYVEPLHPLT--FLPGSNNQ-FIWQSRRDGWNH 336 (706)
T ss_dssp ------------------C---------------------------SSCCCCCSCCE--ECTTCSSE-EEEEECTTSSCE
T ss_pred ------------------C---------------------------CCeECccCCce--eecCCCCE-EEEEEccCCccE
Confidence 0 00000011122 666 665 477888888888
Q ss_pred EEeCC-CceEEEEEeCCCcCeEE-EEEecCCCeEEEEecCCC----eEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 425 LWDSE-SRCCVGVGTGHMGAVGA-VAFSKKLQNFLVSGSSDH----TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 425 i~d~~-~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~d~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
+|.+. ++..+..+..+...+.. ++|+|+++.+++++..++ .|..|++..+. ... ..+...+.
T Consensus 337 l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-----------~~~-l~~~~~~~ 404 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-----------TKD-LTPESGMH 404 (706)
T ss_dssp EEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-----------CEE-SCCSSSEE
T ss_pred EEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-----------cee-ccCCCceE
Confidence 88775 56667777777777877 799999986666666665 55555554331 111 12456688
Q ss_pred EEEEcCCCCEEEEeeCC----CcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCC--cEEEEE
Q 005254 499 SLAVAPNDSLVCTGSQD----RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK--TIKIWS 564 (706)
Q Consensus 499 ~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd 564 (706)
+++|+|||++++....+ +.|++||+.+++ ...+ .+...+....+.+.. .+-.-..|| .+..|-
T Consensus 405 ~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~ 473 (706)
T 2z3z_A 405 RTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLL-EAKNPDTGYAMPEIR-TGTIMAADGQTPLYYKL 473 (706)
T ss_dssp EEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEE-ECC------CCCCEE-EEEEECTTSSSEEEEEE
T ss_pred EEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeec-cccchhhhcCCCCcE-EEEEEcCCCCEEEEEEE
Confidence 99999999988876544 569999998877 3333 344445444443332 233333454 455554
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=1.4e-25 Score=238.71 Aligned_cols=348 Identities=12% Similarity=0.091 Sum_probs=232.3
Q ss_pred EEEEEEccCCCEEEEEeccCeEEEEECCCCeEE-EEeeccC-----------------CCeEEEEECCCCCEEEEecCCC
Q 005254 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCL-RSWKGHD-----------------GPAIGMACHPSGGLLATAGADR 124 (706)
Q Consensus 63 i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~-----------------~~v~~~~~s~~~~~l~~~~~d~ 124 (706)
+..+.|+ |..+++++.++ | +||+.+++.+ ..+..|. ..|.+++|||| ++++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4557777 66677777777 8 9999999873 4443332 56999999999 6666654 59
Q ss_pred cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC-----CeeEEEeecccce---------
Q 005254 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-----KKCVATLDKHFSR--------- 190 (706)
Q Consensus 125 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~--------- 190 (706)
.|++||+.+++... +..+...+.+++|+|||+. ++. ..++.|++||+.+ ++.......+...
T Consensus 102 ~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~--la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 102 GLVGFDMLARKVTY-LFDTNEETASLDFSPVGDR--VAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ 177 (706)
T ss_dssp EEEEEETTTTEEEE-EECCTTCCTTCEECTTSSE--EEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred EEEEEECCCCceEE-ccCCcccccCCcCCCCCCE--EEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence 99999999987654 4456778899999999886 666 4689999999988 7766544433332
Q ss_pred -----EEEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccc
Q 005254 191 -----VTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264 (706)
Q Consensus 191 -----v~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
+.+++|+|||++|++++.|. .+..+.+.
T Consensus 178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~---------------------------------------------- 211 (706)
T 2z3z_A 178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIV---------------------------------------------- 211 (706)
T ss_dssp GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEE----------------------------------------------
T ss_pred hhcCCCceEEECCCCCEEEEEEECCCCCceEEee----------------------------------------------
Confidence 47889999999888876332 11000000
Q ss_pred eEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeE
Q 005254 265 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 344 (706)
Q Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (706)
+...
T Consensus 212 ---------------~~~~------------------------------------------------------------- 215 (706)
T 2z3z_A 212 ---------------DYHP------------------------------------------------------------- 215 (706)
T ss_dssp ---------------ECCS-------------------------------------------------------------
T ss_pred ---------------ccCC-------------------------------------------------------------
Confidence 0000
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
. ........ +...+. ...+..|+
T Consensus 216 --------------------~------------------------------~~~~~~~~--y~~~g~-----~~~~~~l~ 238 (706)
T 2z3z_A 216 --------------------L------------------------------EAESKPLY--YPMAGT-----PSHHVTVG 238 (706)
T ss_dssp --------------------S------------------------------SCEEEEEC--CCBTTS-----CCCEEEEE
T ss_pred --------------------C------------------------------CCceEEee--CCCCCC-----CCCeeEEE
Confidence 0 00000000 000010 11234677
Q ss_pred EEeCCCceEEEEEe--CCCcCeEEEEEecCCCeEEEEecCCC-----eEEEEEecCCCCCCCcccccceeEEEe-ecCc-
Q 005254 425 LWDSESRCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGK- 495 (706)
Q Consensus 425 i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 495 (706)
+||+.+++...... .+...+..++|+|+++ .|++++.++ .|.+||+.++.. ...... .+..
T Consensus 239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~---------~~~~~~~~~~~~ 308 (706)
T 2z3z_A 239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRF---------VRTLFVETDKHY 308 (706)
T ss_dssp EEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCE---------EEEEEEEECSSC
T ss_pred EEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCce---------eeEEEEccCCCe
Confidence 88887776554432 4566789999999998 566665554 899999876420 111111 1222
Q ss_pred --ceEEEEEcC--CCCEEEEeeCCCcEEEEeCC-CccEEEEEeecCCcEEE-EEEccCCCEEEEecC-CC----cEEEEE
Q 005254 496 --DINSLAVAP--NDSLVCTGSQDRTACVWRLP-DLVSVVTFRGHKRGIWS-VEFSPVDQVVITASG-DK----TIKIWS 564 (706)
Q Consensus 496 --~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~-dg----~i~iwd 564 (706)
.+.+++|+| ||+++++++.++.+++|++. ++.....+..+...+.. ++|+|+++.|+.++. ++ .|..||
T Consensus 309 ~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 309 VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 246789999 99999999999999999876 66777788888888877 899999998766554 44 677777
Q ss_pred cCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC----CCEEEEECCCCe
Q 005254 565 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD----GLVKLWTVRTGE 611 (706)
Q Consensus 565 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~ 611 (706)
+.+++ ...+. |...+..++|+|||++|+....+ +.|++||+.+++
T Consensus 389 ~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 389 IKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 77665 34444 66789999999999998876544 459999998887
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=4.8e-26 Score=243.18 Aligned_cols=195 Identities=13% Similarity=0.048 Sum_probs=153.2
Q ss_pred cceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCc---cEEEEEEccCCCEEEEEecc---------CeEEEEECC
Q 005254 23 GPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSD---TITALALSPDDKLLFSSGHS---------REIRVWDLS 90 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~---~i~~l~~s~~~~~l~s~~~d---------~~i~iwd~~ 90 (706)
.+++|||||++++.+.++.|++||+.+++....+.+|.. .|.+++|||||++||+++.+ +.+.+||+.
T Consensus 20 ~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 20 PEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp CCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred cccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC
Confidence 369999999988776556999999999998888887765 49999999999999998764 789999999
Q ss_pred CCeEEEEee---ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcE------------------EE
Q 005254 91 TLKCLRSWK---GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVV------------------SS 149 (706)
Q Consensus 91 ~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v------------------~~ 149 (706)
+++. ..+. +|...+..++|||||++||+++. +.|++||+.+++.......+...+ .+
T Consensus 100 ~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 100 HGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp SCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred CCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence 9876 3333 34556889999999999999876 789999999988766655444333 78
Q ss_pred EEEcCCCCceEEEEEecCC----------------------------------eEEEEECCCCeeEEEeecc------cc
Q 005254 150 ILFHPDTDKSLLFSGSDDA----------------------------------TVRVWDLLAKKCVATLDKH------FS 189 (706)
Q Consensus 150 ~~~~~~~~~~~l~~~~~dg----------------------------------~i~vwd~~~~~~~~~~~~~------~~ 189 (706)
++|+|||+. |++++.++ .|++||+.+++....+..+ ..
T Consensus 178 ~~~SpDg~~--la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 178 HWWSPDGTR--LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEECTTSSE--EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred EEECCCCCE--EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 999999987 66665432 7999999988865666543 57
Q ss_pred eEEEEEEecCCCEEEEEeCC----CEEEEEeCCCCc
Q 005254 190 RVTSMAITSDGSTLISAGRD----KVVNLWDLRDYS 221 (706)
Q Consensus 190 ~v~~~~~~~~~~~l~~~~~d----g~i~~w~~~~~~ 221 (706)
.+..++|+|||++|++.... ..|++||+.+++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~ 291 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence 88999999999988766432 456667665543
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=8.4e-24 Score=202.62 Aligned_cols=195 Identities=11% Similarity=0.099 Sum_probs=149.0
Q ss_pred eEEcCCCCEEEEeeC--CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec-cCeEEEEECCCCeE-EEEeec
Q 005254 25 LVVSSDGSFIACACG--ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH-SREIRVWDLSTLKC-LRSWKG 100 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~--~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~ 100 (706)
..|.++++++++... +.|.+||+.+++.+..+..+...+ +++|+|+|+++++++. ++.|.+||..+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 456677777555543 489999999999988887777777 9999999997777665 88999999999988 777777
Q ss_pred cCCCeEEEEECCCCCEEEEecCCC---cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCe-EEEEECC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADR---KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT-VRVWDLL 176 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~vwd~~ 176 (706)
+..+..+++|+|++++|+++..++ .|.+||+.+++.+..+.. ...+..++|+|+++. ++++...++. |.+|++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~-l~~~~~~~~~~i~~~~~~ 159 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNG-LILIDRSSANTVRRFKID 159 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSC-EEEEEETTTTEEEEEEEC
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCE-EEEEecCCCceEEEEEEC
Confidence 777766699999999999655553 899999999998887764 455699999999876 3455556677 9999987
Q ss_pred CCeeEE----EeecccceEEEEEEecCCCEEEEEe-CCCEEEEEeCCCCcc
Q 005254 177 AKKCVA----TLDKHFSRVTSMAITSDGSTLISAG-RDKVVNLWDLRDYSC 222 (706)
Q Consensus 177 ~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~ 222 (706)
....+. ...........++|+|+|+++++++ .++.|.+||+.+++.
T Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 160 ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred CCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 544331 1112345678999999999766655 588999999876654
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=3.4e-24 Score=205.39 Aligned_cols=277 Identities=11% Similarity=0.081 Sum_probs=206.3
Q ss_pred EeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE-EEEEeC
Q 005254 361 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTG 439 (706)
Q Consensus 361 ~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~ 439 (706)
|.+.....+++...++.|.+||..+++....+..+.... .+. ++|+++.+++++..++.|.+||..+++. ...+..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~--~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTA--ITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEE--ECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEE--EcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 444456667888889999999999999888877766666 776 8899998667777789999999999887 666666
Q ss_pred CCcCeEEEEEecCCCeEEEEecCC-C--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe-eCC
Q 005254 440 HMGAVGAVAFSKKLQNFLVSGSSD-H--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQD 515 (706)
Q Consensus 440 ~~~~v~~~~~~~~~~~~l~~~~~d-~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d 515 (706)
+..+..+++|+|+++ +++++..+ + .|.+||+.... .... ........+++|+|+|++++++ ..+
T Consensus 82 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~----------~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 82 GQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNK----------FIST-IPIPYDAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp CSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTE----------EEEE-EECCTTEEEEEECTTSSCEEEEEETT
T ss_pred CCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCC----------eEEE-EECCCCccceEECCCCCEEEEEecCC
Confidence 666666699999998 55555555 3 89999987652 2222 2344567899999999866554 555
Q ss_pred Cc-EEEEeCCCccEEE----EEeecCCcEEEEEEccCCCEEEE-ecCCCcEEEEEcCCCce---EEEEeecccCEEEEEE
Q 005254 516 RT-ACVWRLPDLVSVV----TFRGHKRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISDGSC---LKTFEGHTSSVLRASF 586 (706)
Q Consensus 516 g~-i~i~d~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~ 586 (706)
+. |.+|++.....+. ........+..++|+|+++++++ +..++.|++||+.+++. +..+.. ...+..++|
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~ 228 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVV 228 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEE
T ss_pred CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEE
Confidence 88 9999987543321 22234556899999999996654 45689999999999988 777764 466788999
Q ss_pred EeCCCEEEEEe-CCCCEEEEECCCCeE--EEEeccC----CC---cEEEEEEcCCCCEEEEEe-CCCcEEEEECCchh
Q 005254 587 LTRGAQIVSCG-ADGLVKLWTVRTGEC--IATYDKH----ED---KIWALAVGKKTEMFATGG-SDALVNLWHDSTAA 653 (706)
Q Consensus 587 s~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~----~~---~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~ 653 (706)
+|||++|++++ .++.|.+||+.+++. +..+..+ .. ....++|+||+++|++++ .++.|.+|++....
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 99999876655 477899999999987 4443322 22 235689999999886655 46799999998653
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=6.8e-23 Score=198.49 Aligned_cols=277 Identities=14% Similarity=0.120 Sum_probs=210.9
Q ss_pred CccEEEEEEccCCCEEEEEec-------cCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEe-cCCCcEEEEEC
Q 005254 60 SDTITALALSPDDKLLFSSGH-------SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA-GADRKVLVWDV 131 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~vw~~ 131 (706)
...+..++|+|+++++++++. ++.|.+||..+++.+..+.. ...+..++|+|++++++++ ..++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 356789999999999988763 56899999999999888875 3557889999999966554 55799999999
Q ss_pred CCCeEEEEeeCCCCc---------EEEEEEcCCCCceEEEEE--ecCCeEEEEECCCCeeEEEeecccceEEEEEEecCC
Q 005254 132 DGGFCTHYFKGHKGV---------VSSILFHPDTDKSLLFSG--SDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG 200 (706)
Q Consensus 132 ~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 200 (706)
.+++.+..+..+... +.+++|+|+++. ++++ +.++.|.+||..+++.+..+..+...+.+++|+|+|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT--VYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE--EEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCE--EEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 999988887765432 789999999886 4443 458899999999999988887566668899999999
Q ss_pred CEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEE
Q 005254 201 STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 280 (706)
Q Consensus 201 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 280 (706)
+++++++.++.|.+||..+++....+....
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------------------------------------------- 226 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKILSRKKLLD-------------------------------------------------- 226 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEEEEEECCC--------------------------------------------------
T ss_pred CEEEEEcCCCeEEEEECCCCeEEEEEEcCC--------------------------------------------------
Confidence 999999999999999987765433221100
Q ss_pred CCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEee
Q 005254 281 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK 360 (706)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 360 (706)
T Consensus 227 -------------------------------------------------------------------------------- 226 (353)
T 3vgz_A 227 -------------------------------------------------------------------------------- 226 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC
Q 005254 361 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH 440 (706)
Q Consensus 361 ~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 440 (706)
.++...+..+. ++|+++.++++...++.|.+||..+++.+..+...
T Consensus 227 --------------------------------~~~~~~~~~~~--~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 272 (353)
T 3vgz_A 227 --------------------------------DGKEHFFINIS--LDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP 272 (353)
T ss_dssp --------------------------------SSSCCCEEEEE--EETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS
T ss_pred --------------------------------CCCCcccceEE--ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 01112233344 77888875666666789999999999888777654
Q ss_pred CcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC
Q 005254 441 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 516 (706)
Q Consensus 441 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 516 (706)
. ...++|+|+++.++++...++.|.+||....+ ..... .....+.+++|+|+|++|+++..++
T Consensus 273 ~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~----------~~~~~-~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 273 E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK----------VVKTF-DTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp S--CCCEEEETTTTEEEEEETTTTEEEEEETTTTE----------EEEEE-ECCSEEEEEEECTTSCEEEEEEECC
T ss_pred C--CceEEECCCCCEEEEEECCCCeEEEEECCCCe----------EEEEE-ecCCCCCeEEEcCCCCEEEEEEccc
Confidence 3 25799999998666777789999999987652 22222 2345678999999999887776654
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=9.3e-23 Score=197.54 Aligned_cols=271 Identities=12% Similarity=0.104 Sum_probs=212.3
Q ss_pred ceeeEeeEeCCCCcEEEEEec-------CCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEE
Q 005254 354 EEILDLKFLGEEEQYLAVATN-------IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~ 426 (706)
..+..+++.+ +++.++++.. ++.|.+||..+++....+..... +..+. ++++++.++++...++.|.+|
T Consensus 41 ~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~--~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 41 KGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK-PFGAT--INNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp SSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC-CCSEE--EETTTTEEEEEETTTTEEEEE
T ss_pred cCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC-cceEE--ECCCCCEEEEEecCCCEEEEE
Confidence 4566788888 4445555542 56899999999988777765433 34444 889999867777888999999
Q ss_pred eCCCceEEEEEeCCCcC---------eEEEEEecCCCeEEEEe-cCCCeEEEEEecCCCCCCCcccccceeEEEeecCcc
Q 005254 427 DSESRCCVGVGTGHMGA---------VGAVAFSKKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496 (706)
Q Consensus 427 d~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (706)
|..+++.+..+..+... +.+++|+|+++.++++. +.++.|.+||....+ .......+...
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~----------~~~~~~~~~~~ 186 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK----------LKTAIQNTGKM 186 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE----------EEEEECCCCTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc----------eEEEecCCCCc
Confidence 99999988877765432 68899999998555554 358899999987542 33333335556
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee----cCCcEEEEEEccCCCEEEEecC-CCcEEEEEcCCCceE
Q 005254 497 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG----HKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCL 571 (706)
Q Consensus 497 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~ 571 (706)
+.+++++|+|+++++++.++.|.+||+.+++....+.. +...+..++|+|+++++++++. ++.|.+||+.+++.+
T Consensus 187 ~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 187 STGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL 266 (353)
T ss_dssp CCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 88999999999999999999999999999988887764 4556888999999997776655 589999999999988
Q ss_pred EEEeecccCEEEEEEEeCCCEEEEEe-CCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 572 KTFEGHTSSVLRASFLTRGAQIVSCG-ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 572 ~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
..+.... ...++|+|+|+++++++ .++.|.+||+.+++.+..+..+ ..+.+++|+||+++|+++..+
T Consensus 267 ~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 267 AKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred EEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 8877543 25699999999776665 6899999999999998888654 478999999999977766655
No 143
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.93 E-value=2e-24 Score=230.08 Aligned_cols=208 Identities=13% Similarity=0.144 Sum_probs=150.7
Q ss_pred CCCcccccceeeceeeeeeeeccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCc---cEEEEEEccCCCEEEE
Q 005254 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSD---TITALALSPDDKLLFS 77 (706)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~---~i~~l~~s~~~~~l~s 77 (706)
|..+.++..|...-. . ....++|+|||++++.+.++.|++||+.+++....+.+|.. .|.+++|||||++||+
T Consensus 1 ~~~~~~~~~~~~~~~--~--~~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~ 76 (719)
T 1z68_A 1 MRALTLKDILNGTFS--Y--KTFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYL 76 (719)
T ss_dssp CBCCCHHHHHHTTTC--C--CCCCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEE
T ss_pred CCcccHHHHhcCccc--C--CCCccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEE
Confidence 555566665553311 1 12369999999888777667999999999998777776544 4899999999999998
Q ss_pred Eec---------cCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-eCCCCcE
Q 005254 78 SGH---------SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF-KGHKGVV 147 (706)
Q Consensus 78 ~~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v 147 (706)
++. ++.|++||+.+++.+.... ....+..++|||||++||++. ++.|++|++.+++..... .++...|
T Consensus 77 ~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v 154 (719)
T 1z68_A 77 ESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKI 154 (719)
T ss_dssp EEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTE
T ss_pred EecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCe
Confidence 876 6899999999998732111 125688999999999999986 789999999888765432 2333323
Q ss_pred -----------------EEEEEcCCCCceEEEEEecCC----------------------------------eEEEEECC
Q 005254 148 -----------------SSILFHPDTDKSLLFSGSDDA----------------------------------TVRVWDLL 176 (706)
Q Consensus 148 -----------------~~~~~~~~~~~~~l~~~~~dg----------------------------------~i~vwd~~ 176 (706)
.+++|+|||+. |++++.|. .|++||+.
T Consensus 155 ~~g~~~~v~~ee~~~~~~~~~wSPDG~~--la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~ 232 (719)
T 1z68_A 155 FNGIPDWVYEEEMLATKYALWWSPNGKF--LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT 232 (719)
T ss_dssp EESSCCHHHHHHTTCSSCCEEECTTSSE--EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS
T ss_pred EcccccceeeeecccCcccEEECCCCCE--EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC
Confidence 48999999987 77666442 78899998
Q ss_pred CCeeE---E-----EeecccceEEEEEEecCCCEEEEEeCC----CEEEEEe
Q 005254 177 AKKCV---A-----TLDKHFSRVTSMAITSDGSTLISAGRD----KVVNLWD 216 (706)
Q Consensus 177 ~~~~~---~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~w~ 216 (706)
+++.. . .+.+|...+..++|+||++++++.... ..|.+||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 87642 1 123577788999999998766664322 2355566
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=2.4e-23 Score=200.38 Aligned_cols=268 Identities=12% Similarity=0.071 Sum_probs=208.2
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcc--eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC----
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSE--IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH---- 440 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---- 440 (706)
++++++..++.|.+||+.+++....+..... .+..+. ++|+++.+++++..++.|.+||+.+++.+..+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPM--VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEE--ECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceE--EcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 4788889999999999999988877764332 355555 88999887788888899999999999888766532
Q ss_pred -CcCeEEEEEecCCCeEEEEec------------CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCC
Q 005254 441 -MGAVGAVAFSKKLQNFLVSGS------------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 507 (706)
Q Consensus 441 -~~~v~~~~~~~~~~~~l~~~~------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 507 (706)
...+..++|+|+++ .++++. .++.|.+||+.... ...... ....+.+++|+|+|+
T Consensus 80 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~-~~~~~~~~~~s~dg~ 147 (337)
T 1pby_B 80 RVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLS----------RRKAFE-APRQITMLAWARDGS 147 (337)
T ss_dssp EEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTE----------EEEEEE-CCSSCCCEEECTTSS
T ss_pred ccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCc----------EEEEEe-CCCCcceeEECCCCC
Confidence 22677899999998 555554 57999999987542 222222 345678899999999
Q ss_pred EEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCC------------------------cEEEE
Q 005254 508 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK------------------------TIKIW 563 (706)
Q Consensus 508 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------------------------~i~iw 563 (706)
+|+++ ++.|.+||+.+++....+..+... ..+.|+|+++.++..+.++ .|.+|
T Consensus 148 ~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 224 (337)
T 1pby_B 148 KLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224 (337)
T ss_dssp CEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred EEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEE
Confidence 88888 688999999999888777654411 1237899998776554332 46899
Q ss_pred EcCCCceE-EEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 005254 564 SISDGSCL-KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 564 d~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 642 (706)
|+.+++.. ..+..+...+..++|+|||++|+++ ++.|++||+.+++.+..+..+ ..+.+++|+||+++|++++.++
T Consensus 225 d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~ 301 (337)
T 1pby_B 225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALG 301 (337)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSS
T ss_pred eCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCC
Confidence 99988774 2344466678899999999999988 799999999999988887643 4678999999999999999999
Q ss_pred cEEEEECCchhH
Q 005254 643 LVNLWHDSTAAE 654 (706)
Q Consensus 643 ~i~vw~~~~~~~ 654 (706)
.|.+||+.+++.
T Consensus 302 ~i~v~d~~~~~~ 313 (337)
T 1pby_B 302 DLAAYDAETLEK 313 (337)
T ss_dssp EEEEEETTTCCE
T ss_pred cEEEEECcCCcE
Confidence 999999987754
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=2.1e-22 Score=193.79 Aligned_cols=171 Identities=16% Similarity=0.172 Sum_probs=130.6
Q ss_pred CEEEEeeCC-eEEEEEccCCeEEEeecCCCc--cEEEEEEccCCCEEEE-EeccCeEEEEECCCCeEEEEeecc-----C
Q 005254 32 SFIACACGE-SINIVDLSNASIKSTIEGGSD--TITALALSPDDKLLFS-SGHSREIRVWDLSTLKCLRSWKGH-----D 102 (706)
Q Consensus 32 ~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~--~i~~l~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~-----~ 102 (706)
++++++..+ .|.+||+.+++.+..+..... .+.+++|+|+|+++++ +..++.|.+||+.+++.+..+... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 356666554 999999999998887764332 4789999999987654 556789999999999988877632 2
Q ss_pred CCeEEEEECCCCCEEEEec------------CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeE
Q 005254 103 GPAIGMACHPSGGLLATAG------------ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~------------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 170 (706)
..+..++|+|++++|+++. .++.|.+||+.+++.+..+.. ...+..++|+|+++. ++++ ++.|
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~--l~~~--~~~i 156 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSK--LYGL--GRDL 156 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSC--EEEE--SSSE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCE--EEEe--CCeE
Confidence 2677899999999999885 579999999999988877764 556788999999887 5555 6889
Q ss_pred EEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC
Q 005254 171 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 208 (706)
.+||+.+++....+..+... ..+.|+|+++.++..+.
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~ 193 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHE 193 (337)
T ss_dssp EEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCT
T ss_pred EEEECCCCcEeeeeeccccC-CCceeCCCccEEeeecc
Confidence 99999999887776544310 12267788776655443
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=6.5e-23 Score=197.83 Aligned_cols=270 Identities=12% Similarity=0.174 Sum_probs=190.2
Q ss_pred EEEEEecCCcEEEEeCC-Cc--eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC--Cce--EEEEEeCC
Q 005254 368 YLAVATNIEQVQVYDLS-SM--SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRC--CVGVGTGH 440 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~-~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~--~~~~~~~~ 440 (706)
++++...++.|.+|++. ++ +.... ..+...+.++. ++|+++.+++++..++.|.+|++. +++ .+..+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMV--VSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEE--ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEE--ECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 44444778999999985 23 22322 33555666676 889998844444445999999987 444 33444444
Q ss_pred CcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CCCcEE
Q 005254 441 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTAC 519 (706)
Q Consensus 441 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~ 519 (706)
. .+..++|+|+++.+++++..++.|.+|++..+. ....... ......+.+++|+|+++++++++ .++.|.
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-------~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-------PVGVVDV-VEGLDGCHSANISPDNRTLWVPALKQDRIC 154 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-------EEEEEEE-ECCCTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-------ccccccc-ccCCCCceEEEECCCCCEEEEecCCCCEEE
Confidence 3 889999999998555666668999999995211 0112222 22345688999999999888887 889999
Q ss_pred EEeCCC-ccEEE----EEee-cCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcCC--Cce--EEEEeec------ccCEE
Q 005254 520 VWRLPD-LVSVV----TFRG-HKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISD--GSC--LKTFEGH------TSSVL 582 (706)
Q Consensus 520 i~d~~~-~~~~~----~~~~-~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~--~~~--~~~~~~~------~~~i~ 582 (706)
+||+.+ ++... .+.. ....+..++|+|++++|+++ ..++.|.+|++.. ++. ...+... ...+.
T Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T 1ri6_A 155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA 234 (343)
T ss_dssp EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence 999987 54432 2222 34578899999999977555 4789999999953 433 2233211 23567
Q ss_pred EEEEEeCCCEEEEEe-CCCCEEEEECC----CCeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 005254 583 RASFLTRGAQIVSCG-ADGLVKLWTVR----TGECIATYDKHEDKIWALAVGKKTEMFATGG-SDALVNLWHDS 650 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~-~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~ 650 (706)
.++|+|+|++|+++. .++.|.+||+. +.+.+..+..+.. +..++|+|++++|++++ .++.+.+|+++
T Consensus 235 ~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 235 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 899999999887544 78999999998 3355556655554 88999999999888877 68999999664
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.7e-22 Score=194.98 Aligned_cols=299 Identities=13% Similarity=0.151 Sum_probs=198.1
Q ss_pred CEEEE-ecCCCcEEEEECC-CC--eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecC-CeEEEEECC--CCe--eEEEee
Q 005254 115 GLLAT-AGADRKVLVWDVD-GG--FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD-ATVRVWDLL--AKK--CVATLD 185 (706)
Q Consensus 115 ~~l~~-~~~d~~i~vw~~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~i~vwd~~--~~~--~~~~~~ 185 (706)
+++++ ++.++.|.+|+++ ++ +.+..+ .+...+.+++|+|+++. +++++.+ +.|.+|++. +++ .+..+.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~--l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 81 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRY--LYVGVRPEFRVLAYRIAPDDGALTFAAESA 81 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSE--EEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCE--EEEeecCCCeEEEEEecCCCCceeeccccc
Confidence 34444 4779999999995 34 333333 47788999999999876 7777665 999999997 554 334444
Q ss_pred cccceEEEEEEecCCCEEEEEeC-CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccc
Q 005254 186 KHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264 (706)
Q Consensus 186 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
.+. .+..++|+|++++|++++. ++.|.+|++.++......
T Consensus 82 ~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~-------------------------------------- 122 (343)
T 1ri6_A 82 LPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV-------------------------------------- 122 (343)
T ss_dssp CSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE--------------------------------------
T ss_pred cCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccc--------------------------------------
Confidence 433 7889999999998877765 788999987421100000
Q ss_pred eEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeE
Q 005254 265 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 344 (706)
Q Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (706)
T Consensus 123 -------------------------------------------------------------------------------- 122 (343)
T 1ri6_A 123 -------------------------------------------------------------------------------- 122 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
..+..+ ..+.++. ++|+++.++++...++.|.
T Consensus 123 ---------------------------------------------~~~~~~-~~~~~~~--~s~dg~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 123 ---------------------------------------------DVVEGL-DGCHSAN--ISPDNRTLWVPALKQDRIC 154 (343)
T ss_dssp ---------------------------------------------EEECCC-TTBCCCE--ECTTSSEEEEEEGGGTEEE
T ss_pred ---------------------------------------------ccccCC-CCceEEE--ECCCCCEEEEecCCCCEEE
Confidence 000000 1122333 7788887555554899999
Q ss_pred EEeCCC-ceEEE----EEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe------e
Q 005254 425 LWDSES-RCCVG----VGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA------A 492 (706)
Q Consensus 425 i~d~~~-~~~~~----~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~------~ 492 (706)
+||+.+ ++... ... .....+..++|+|+++.+++++..++.+.+|++....... ....... .
T Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~------~~~~~~~~~~~~~~ 228 (343)
T 1ri6_A 155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI------ECVQTLDMMPENFS 228 (343)
T ss_dssp EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC------EEEEEEECSCTTCC
T ss_pred EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE------EEEeeccccCcccc
Confidence 999987 54432 222 2345788999999998666677789999999996422111 0111111 1
Q ss_pred cCcceEEEEEcCCCCEEEEee-CCCcEEEEeCC----CccEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEc-
Q 005254 493 HGKDINSLAVAPNDSLVCTGS-QDRTACVWRLP----DLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSI- 565 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~- 565 (706)
....+..++|+|+|++|+++. .++.|.+||+. +.+.+..+..+.. +..++|+|++++|++++ .++.|.+|++
T Consensus 229 ~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 229 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 123567899999998887554 78999999998 3345555554444 88999999999888877 6899999955
Q ss_pred -CCCce--EEEEeecccCEEEEEEEeCCC
Q 005254 566 -SDGSC--LKTFEGHTSSVLRASFLTRGA 591 (706)
Q Consensus 566 -~~~~~--~~~~~~~~~~i~~~~~s~~~~ 591 (706)
.+++. +..+.. .....+++|.++.+
T Consensus 308 ~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 308 GEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp TTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred CCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 45543 344443 24566778877654
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.3e-23 Score=198.32 Aligned_cols=255 Identities=11% Similarity=0.101 Sum_probs=197.1
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC-ceEEEEEeCC-CcCeEEEEE
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGH-MGAVGAVAF 449 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~-~~~v~~~~~ 449 (706)
...++.|++||+.+++.. .+..|...+.++. ++|+++. +++++ ++.|++||+.+ ++.......+ ...+.+++|
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~--~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPN--WSPDGKY-LLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEE--ECTTSSE-EEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeE--ECCCCCE-EEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 345689999999988876 4455778888888 8899987 66655 78999999999 8777666555 367889999
Q ss_pred ecCCCeEEEEec--CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEE-EeeCCCcEEEEeCC-C
Q 005254 450 SKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC-TGSQDRTACVWRLP-D 525 (706)
Q Consensus 450 ~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~i~d~~-~ 525 (706)
+|+++ ++++++ .++...+|.++.... ....+. ....+..++|+|+++.|+ ++..++.+++|++. .
T Consensus 93 spdg~-~l~~~~~~~~~~~~l~~~~~~~~---------~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 93 SPDGA-LYAISDKVEFGKSAIYLLPSTGG---------TPRLMT-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp CTTSS-EEEEEECTTTSSCEEEEEETTCC---------CCEECC-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CCCCC-EEEEEEeCCCCcceEEEEECCCC---------ceEEee-cCCCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 99998 666666 345666766653221 111222 233488899999999887 77789999999863 2
Q ss_pred ccEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcC-CCceEEEEeecccCEEEEEEEeCCCEEEEEeCC----
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSIS-DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---- 599 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---- 599 (706)
......+..+...+.+++|+|++++|+.++ .++.+++|++. .+.....+..|...+..+.|+|+|++|++++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 162 SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 334456667888999999999999887766 58999999986 566677777788889999999999999988876
Q ss_pred -------CCEEEEECCCCeE--EEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 005254 600 -------GLVKLWTVRTGEC--IATYDKHEDKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 600 -------g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 642 (706)
+.|++||+.+++. +..+.+|...+.+++|+|++++|++++.|.
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999998865 444557888999999999999998877654
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=3.9e-23 Score=220.13 Aligned_cols=358 Identities=10% Similarity=0.087 Sum_probs=232.4
Q ss_pred EEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCC---CeEEEEECCCCCEEEEecC---------CCcEEEEECC
Q 005254 65 ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG---PAIGMACHPSGGLLATAGA---------DRKVLVWDVD 132 (706)
Q Consensus 65 ~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~---------d~~i~vw~~~ 132 (706)
+++|+|||+++++ +.|+.|++||+.+++....+.+|.. .+.+++|||||++|++++. ++.|++||++
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 7899999976655 4689999999999998877776644 4899999999999999876 6899999999
Q ss_pred CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe-ecccceE-----------------EEE
Q 005254 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRV-----------------TSM 194 (706)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v-----------------~~~ 194 (706)
+++.+... .....+..++|+|||+. |+.+. ++.|++||+.+++..... .++...+ .++
T Consensus 99 ~g~~~~~~-~l~~~~~~~~~SPDG~~--la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 NGEFVRGN-ELPRPIQYLCWSPVGSK--LAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTEECCSS-CCCSSBCCEEECSSTTC--EEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCccccce-ecCcccccceECCCCCE--EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 99863111 12356889999999987 66664 789999999888765432 2232222 489
Q ss_pred EEecCCCEEEEEeCC-CEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCC
Q 005254 195 AITSDGSTLISAGRD-KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 273 (706)
Q Consensus 195 ~~~~~~~~l~~~~~d-g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (706)
+|+|||++|++++.| +.+.+|.+..... ....
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~----~~~~------------------------------------------- 207 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGD----EQYP------------------------------------------- 207 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCS----SSSC-------------------------------------------
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCC----CCCc-------------------------------------------
Confidence 999999999988754 3333443211000 0000
Q ss_pred CeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccC
Q 005254 274 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 353 (706)
Q Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (706)
T Consensus 208 -------------------------------------------------------------------------------- 207 (719)
T 1z68_A 208 -------------------------------------------------------------------------------- 207 (719)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceee--------EeeeCCcceEEEeeeeeecCCCEEEEEeeCC----C
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--------YVLAGHSEIVLCLDTCALSSGKILIVTGSKD----N 421 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d----g 421 (706)
....+.|..... ......+.+||+.+++.. ..+.+|...+..+. ++|+++ ++++.... .
T Consensus 208 -~~~~~~yp~~g~-----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~SpD~~-~~~~~~~~~~~~~ 278 (719)
T 1z68_A 208 -RTINIPYPKAGA-----KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLT--WVTDER-VCLQWLKRVQNVS 278 (719)
T ss_dssp -EEEEEECCBTTS-----CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEE--ESSSSE-EEEEEEESSTTEE
T ss_pred -cceeecCCCCCC-----CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeE--EeCCCe-EEEEEeccccCeE
Confidence 000111100000 001135667777766542 12335777788887 888854 46654332 2
Q ss_pred cEEEEe----CCCceEEEEE----eCCCcCeE-----EEEEecCCCeEEE-EecCCCe--EEEEEecCCCCCCCcccccc
Q 005254 422 SVRLWD----SESRCCVGVG----TGHMGAVG-----AVAFSKKLQNFLV-SGSSDHT--IKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 422 ~i~i~d----~~~~~~~~~~----~~~~~~v~-----~~~~~~~~~~~l~-~~~~d~~--i~i~~~~~~~~~~~~~~~~~ 485 (706)
.|.+|| ..+++..... ..+...+. .++|+|+|+.+++ +...+|. |.+|++....
T Consensus 279 ~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---------- 348 (719)
T 1z68_A 279 VLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---------- 348 (719)
T ss_dssp EEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----------
T ss_pred EEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----------
Confidence 488899 8887765544 35666666 7899999986555 3445664 5555544331
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeCC-----CcEEEEeCCC--cc-EEEEEee----cCCcEEEEEEccCCCEEEE
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQD-----RTACVWRLPD--LV-SVVTFRG----HKRGIWSVEFSPVDQVVIT 553 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~--~~-~~~~~~~----~~~~v~~~~~s~~~~~l~~ 553 (706)
...+..+...+..+.++ +++.++..+.+ +..++|.+.. +. ....+.. |...+..+.|+|++++++.
T Consensus 349 -~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~ 426 (719)
T 1z68_A 349 -AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYAL 426 (719)
T ss_dssp -CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEE
T ss_pred -eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEE
Confidence 22233345557777777 78777766654 7888888753 32 2233332 5567889999999987764
Q ss_pred e-cCC--CcEEEEEcCCCceEEEEe
Q 005254 554 A-SGD--KTIKIWSISDGSCLKTFE 575 (706)
Q Consensus 554 ~-~~d--g~i~iwd~~~~~~~~~~~ 575 (706)
. +.+ ..+.+||+.+++++..+.
T Consensus 427 ~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 427 VCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp EECCBSSCEEEEECSSSCCEEEEEE
T ss_pred EcCCCCCCeEEEEECCCCCEEEEee
Confidence 3 333 468999998888766554
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=6e-22 Score=194.53 Aligned_cols=197 Identities=21% Similarity=0.144 Sum_probs=158.8
Q ss_pred ccceEEcCCCCEEEEeeCCeEEEEEccCC-----------eEEE----eecCCCccEEEEEEccCCCEEE----EEeccC
Q 005254 22 GGPLVVSSDGSFIACACGESINIVDLSNA-----------SIKS----TIEGGSDTITALALSPDDKLLF----SSGHSR 82 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~~i~i~d~~~~-----------~~~~----~l~~~~~~i~~l~~s~~~~~l~----s~~~d~ 82 (706)
...+++++++.++++++.+.+.+|+.... .... ..-.+...|++++|+|+|++|| +++.|+
T Consensus 39 ~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred ccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 45899999999999999888999876421 1110 0112566899999999999999 778899
Q ss_pred eEEEEECCCC--------e---EEEEeeccCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEE
Q 005254 83 EIRVWDLSTL--------K---CLRSWKGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSI 150 (706)
Q Consensus 83 ~i~iwd~~~~--------~---~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~ 150 (706)
.|+|||+.++ + .+..+.+|...|.+++|+|+ +.+|++++.||+|++||+.++..+....+|...|.++
T Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v 198 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSV 198 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEE
T ss_pred eEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEE
Confidence 9999998765 2 24566779999999999998 8899999999999999999998777777899999999
Q ss_pred EEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecc-------cceEEEEEEecCCCEEEEEe-CCC------EEEEEe
Q 005254 151 LFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH-------FSRVTSMAITSDGSTLISAG-RDK------VVNLWD 216 (706)
Q Consensus 151 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~-~dg------~i~~w~ 216 (706)
+|+|+++. |++|+.||.|++||.+ ++....+..| ...+.+++|++++.++++.+ .+| .+++|+
T Consensus 199 ~wspdg~~--lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~ 275 (434)
T 2oit_A 199 CWSPKGKQ--LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMAL 275 (434)
T ss_dssp EECTTSSC--EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEE
T ss_pred EEcCCCCE--EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEE
Confidence 99999887 9999999999999997 5555555433 34899999999887775543 332 489999
Q ss_pred CCCCc
Q 005254 217 LRDYS 221 (706)
Q Consensus 217 ~~~~~ 221 (706)
+....
T Consensus 276 l~~~~ 280 (434)
T 2oit_A 276 LPKKE 280 (434)
T ss_dssp CCCTT
T ss_pred eccCC
Confidence 98653
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=8e-21 Score=182.99 Aligned_cols=265 Identities=12% Similarity=0.092 Sum_probs=181.4
Q ss_pred CcEEEEeC--CCceeeE-eeeCCcceEEEeeeeeecCCCEEEEEeeC--CCcEEEEeCCCce--EEEEEeCCCcCeEEEE
Q 005254 376 EQVQVYDL--SSMSCSY-VLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVRLWDSESRC--CVGVGTGHMGAVGAVA 448 (706)
Q Consensus 376 ~~i~~~d~--~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~ 448 (706)
+.+.+|++ .+++... ....+...+..++ ++|+++ ++++... ++.|.+|++.+++ .+..+..+...+..++
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a--~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLA--LSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEE--ECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEE--EccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 45566554 4555433 2223334445555 788777 4555543 6899999997765 3444455677889999
Q ss_pred EecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee---------cCcceEEEEEcCCCCEEEEeeCCCcEE
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---------HGKDINSLAVAPNDSLVCTGSQDRTAC 519 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~s~~~~~l~~~~~dg~i~ 519 (706)
|+|+++.++++...++.+.+|++..... ......... ....+.+++|+|+|+++++...++.|.
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~-------~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~ 165 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGA-------LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVY 165 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSC-------EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCC-------eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEE
Confidence 9999984444444789999999964211 011111111 123478899999999666666788999
Q ss_pred EEeCC-CccEEE--EEee-cCCcEEEEEEccCCCEEEE-ecCCCcEEEEEcCC--Cce--EEEEeecc------cCEEEE
Q 005254 520 VWRLP-DLVSVV--TFRG-HKRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISD--GSC--LKTFEGHT------SSVLRA 584 (706)
Q Consensus 520 i~d~~-~~~~~~--~~~~-~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~--~~~--~~~~~~~~------~~i~~~ 584 (706)
+|++. +++... .+.. ....+..++|+|||++|++ ...++.|.+|++.. ++. +..+.... ..+..+
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 245 (347)
T 3hfq_A 166 VYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAI 245 (347)
T ss_dssp EEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEE
T ss_pred EEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeE
Confidence 99998 454332 2222 2336788999999996665 56788999999874 443 22333222 348889
Q ss_pred EEEeCCCEEE-EEeCCCCEEEEECC---CCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-CcEEEEECC
Q 005254 585 SFLTRGAQIV-SCGADGLVKLWTVR---TGECIATYDKHEDKIWALAVGKKTEMFATGGSD-ALVNLWHDS 650 (706)
Q Consensus 585 ~~s~~~~~l~-~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vw~~~ 650 (706)
+|+|||++|+ +...++.|.+|++. +.+.+..+..+...+..++|+|||++|++++.+ +.+.+|+++
T Consensus 246 ~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 246 RLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 9999999884 55568999999997 335666676777778999999999998887764 899999664
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=5.9e-22 Score=186.86 Aligned_cols=174 Identities=17% Similarity=0.212 Sum_probs=134.7
Q ss_pred CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC-CeEEEEeecc-CCCeEEEEECCCCCEE
Q 005254 40 ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST-LKCLRSWKGH-DGPAIGMACHPSGGLL 117 (706)
Q Consensus 40 ~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~s~~~~~l 117 (706)
+.|++||+.+++... +..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+||+++|
T Consensus 22 ~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 99 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALY 99 (297)
T ss_dssp EEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEE
T ss_pred eeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEE
Confidence 379999999988764 555889999999999999999986 77999999999 8877777666 3788999999999999
Q ss_pred EEec--CCCc--EEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC-CCeeEEEeecccceEE
Q 005254 118 ATAG--ADRK--VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKCVATLDKHFSRVT 192 (706)
Q Consensus 118 ~~~~--~d~~--i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~ 192 (706)
++++ .++. |..|+..+++ ...+..+ ..+..++|+|+++. +++++..++.+.+|++. .......+..+...+.
T Consensus 100 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 176 (297)
T 2ojh_A 100 AISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRND 176 (297)
T ss_dssp EEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCCEEECCCSSSCEE
T ss_pred EEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCCcceEcccCCCccc
Confidence 9988 3344 4445555555 3444433 34899999999875 34478889999999863 2334456667888999
Q ss_pred EEEEecCCCEEEEEe-CCCEEEEEeCC
Q 005254 193 SMAITSDGSTLISAG-RDKVVNLWDLR 218 (706)
Q Consensus 193 ~~~~~~~~~~l~~~~-~dg~i~~w~~~ 218 (706)
+++|+|++++|+.++ .++.+.+|++.
T Consensus 177 ~~~~s~dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 177 GPDYSPDGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cceECCCCCEEEEEecCCCCccEEEEC
Confidence 999999999888766 47777777753
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=6.8e-22 Score=204.67 Aligned_cols=271 Identities=8% Similarity=-0.024 Sum_probs=193.9
Q ss_pred CccEEEEEEccCCCEEEEEec-cCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecC---CCcEEEEECCC--
Q 005254 60 SDTITALALSPDDKLLFSSGH-SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA---DRKVLVWDVDG-- 133 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~vw~~~~-- 133 (706)
..+|.+++|+|||++||+++. +|++.||++.+++..+....+...+..++|||| +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 457999999999999999877 999999999777665444433368999999999 77776654 45455655432
Q ss_pred -CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC---
Q 005254 134 -GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD--- 209 (706)
Q Consensus 134 -~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 209 (706)
+... .+... ..+...+|+|+++..++++++.++ +.+||+.+++.......+ . .+++|+|||++|++++.+
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETT
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCC
Confidence 3222 33322 234467999998876677666666 459999988766555433 3 788999999999988766
Q ss_pred -CEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 210 -KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 210 -g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
+.|++||+.+++..
T Consensus 174 ~~~i~~~d~~~g~~~----------------------------------------------------------------- 188 (582)
T 3o4h_A 174 RVSLFTSNLSSGGLR----------------------------------------------------------------- 188 (582)
T ss_dssp EEEEEEEETTTCCCE-----------------------------------------------------------------
T ss_pred CeEEEEEcCCCCCce-----------------------------------------------------------------
Confidence 56666665543311
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcE
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 368 (706)
T Consensus 189 -------------------------------------------------------------------------------- 188 (582)
T 3o4h_A 189 -------------------------------------------------------------------------------- 188 (582)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCC--cEEEEeCCCceEEEEEeCCCcCeEE
Q 005254 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGA 446 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~ 446 (706)
.+..+...+..+. ++|+++. ++++..++ .|++||+.+++.. .+..+...+..
T Consensus 189 ----------------------~l~~~~~~~~~~~--~SpDG~~-l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~ 242 (582)
T 3o4h_A 189 ----------------------VFDSGEGSFSSAS--ISPGMKV-TAGLETAREARLVTVDPRDGSVE-DLELPSKDFSS 242 (582)
T ss_dssp ----------------------EECCSSCEEEEEE--ECTTSCE-EEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHH
T ss_pred ----------------------EeecCCCccccce--ECCCCCE-EEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhh
Confidence 2223333444444 7888887 56777788 8999999988877 77777777777
Q ss_pred EE--------EecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCc-
Q 005254 447 VA--------FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT- 517 (706)
Q Consensus 447 ~~--------~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~- 517 (706)
++ |+|+| .++++++.++.+++|++ ++ ... .....+.+++|+ +++++++++.+..
T Consensus 243 ~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~----------~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p 305 (582)
T 3o4h_A 243 YRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GE----------RVE---APQGNHGRVVLW-RGKLVTSHTSLSTP 305 (582)
T ss_dssp HCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TE----------EEC---CCSSEEEEEEEE-TTEEEEEEEETTEE
T ss_pred hhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CC----------eec---cCCCceEEEEec-CCEEEEEEcCCCCC
Confidence 77 99999 59999999999999998 21 111 233567899999 9999998887744
Q ss_pred --EEEEeCCC
Q 005254 518 --ACVWRLPD 525 (706)
Q Consensus 518 --i~i~d~~~ 525 (706)
+.+||..+
T Consensus 306 ~~l~~~d~~~ 315 (582)
T 3o4h_A 306 PRIVSLPSGE 315 (582)
T ss_dssp EEEEEETTCC
T ss_pred CeEEEEcCCC
Confidence 67777654
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=9.3e-22 Score=203.67 Aligned_cols=271 Identities=12% Similarity=0.044 Sum_probs=200.3
Q ss_pred CceeeEeeEeCCCCcEEEEEec-CCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC---CCcEEEEeC
Q 005254 353 NEEILDLKFLGEEEQYLAVATN-IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK---DNSVRLWDS 428 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~ 428 (706)
..++..++|++ +++.++.++. +|.+.+|++.+++.......+...+..+. ++|+ .++++++. +....+|.+
T Consensus 21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~--~spd--~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPH--YGVG--RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEEC--TTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcEeeeccccccccccc--CCCC--eEEEEeccCCCCcceEEEEE
Confidence 34688888887 6666776665 99999999977666544444435777776 6666 44666654 444555543
Q ss_pred CC---ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 429 ES---RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 429 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
.. +... .+.. .......+|+|+++..+++.+.++.+.+||+..+. ...+..+.. .+++|+||
T Consensus 96 ~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-----------~~~l~~~~~--~~~~~spD 160 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-----------LRELARLPG--FGFVSDIR 160 (582)
T ss_dssp ETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-----------EEEEEEESS--CEEEEEEE
T ss_pred eccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-----------EEEeecCCC--ceEEECCC
Confidence 22 2222 3322 22345678999987666666666666699997652 222222333 78999999
Q ss_pred CCEEEEeeCC----CcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCC--cEEEEEcCCCceEEEEeeccc
Q 005254 506 DSLVCTGSQD----RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK--TIKIWSISDGSCLKTFEGHTS 579 (706)
Q Consensus 506 ~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~ 579 (706)
|++|++++.+ +.|++||+.+++.. .+..|...+..++|||||+.|+++..++ .|++||+.+++.. .+..|..
T Consensus 161 G~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~ 238 (582)
T 3o4h_A 161 GDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK 238 (582)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS
T ss_pred CCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc
Confidence 9999988777 78999999888765 6677888899999999999999888888 8999999988887 7777776
Q ss_pred CEEEEE--------EEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc---EEEEE
Q 005254 580 SVLRAS--------FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL---VNLWH 648 (706)
Q Consensus 580 ~i~~~~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~vw~ 648 (706)
.+..+. |+|||..+++++.|+.+++|++ |+.+. .+.+.+.+++|+ +++++++++.+.. +.+|+
T Consensus 239 ~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 239 DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 666666 9999988999999999999999 77655 345788999999 9999998887754 66666
Q ss_pred CCc
Q 005254 649 DST 651 (706)
Q Consensus 649 ~~~ 651 (706)
...
T Consensus 313 ~~~ 315 (582)
T 3o4h_A 313 SGE 315 (582)
T ss_dssp TCC
T ss_pred CCC
Confidence 653
No 155
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.89 E-value=1.4e-20 Score=199.98 Aligned_cols=363 Identities=13% Similarity=0.087 Sum_probs=225.0
Q ss_pred cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCC-----eEEEEECCCCCEEEEecCC---------CcEE
Q 005254 62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP-----AIGMACHPSGGLLATAGAD---------RKVL 127 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~d---------~~i~ 127 (706)
...+++|+|||++++++ |+.|++||+.+++....+.+|... ...++|||||++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35689999999999886 899999999999988888877643 2347899999999998865 5677
Q ss_pred EEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe-ecccceE---------------
Q 005254 128 VWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRV--------------- 191 (706)
Q Consensus 128 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v--------------- 191 (706)
+||+.+++.. .+..|...+...+|||||+. |+.+ .++.|++|++.+++..+.. .++...+
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEECCCCcEE-EcccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 9999999855 46668889999999999987 6666 5688999999888755422 2232222
Q ss_pred --EEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEE
Q 005254 192 --TSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI 268 (706)
Q Consensus 192 --~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (706)
..+.|||||+.|+.+..|. .+.+|++....... ........+.+...|.
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~--~~~~~~~~~~yp~~G~-------------------------- 223 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES--LQYPKTVRVPYPKAGA-------------------------- 223 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT--CSSCEEEEEECCBTTS--------------------------
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC--CCCCcceeecCCCCcC--------------------------
Confidence 3489999999999886544 36666642111000 0000011111111110
Q ss_pred EecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeE
Q 005254 269 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKR 348 (706)
Q Consensus 269 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (706)
T Consensus 224 -------------------------------------------------------------------------------- 223 (740)
T 4a5s_A 224 -------------------------------------------------------------------------------- 223 (740)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC---ce--eeEeee------CCcceEEEeeeeeecCCCEEEEEe
Q 005254 349 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS---MS--CSYVLA------GHSEIVLCLDTCALSSGKILIVTG 417 (706)
Q Consensus 349 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~---~~--~~~~~~------~~~~~i~~~~~~~~~~~~~~l~~~ 417 (706)
. .....+.+||+.+ +. ....+. ++...+..+. ++|+++.++...
T Consensus 224 ------------------~-----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--wspdg~~~~~~~ 278 (740)
T 4a5s_A 224 ------------------V-----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVT--WATQERISLQWL 278 (740)
T ss_dssp ------------------C-----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEE--EEETTEEEEEEE
T ss_pred ------------------c-----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEE--EeCCCeEEEEEe
Confidence 0 0012466677766 52 111222 3666777777 889888633333
Q ss_pred eC---CCcEEEEeCCCce----EE--EEE--eCCCcCeE-----EEEEecCCCeEE-EEecCCC--eEEEEEecCCCCCC
Q 005254 418 SK---DNSVRLWDSESRC----CV--GVG--TGHMGAVG-----AVAFSKKLQNFL-VSGSSDH--TIKVWSFDGLSDDA 478 (706)
Q Consensus 418 ~~---dg~i~i~d~~~~~----~~--~~~--~~~~~~v~-----~~~~~~~~~~~l-~~~~~d~--~i~i~~~~~~~~~~ 478 (706)
.. +..|.+||+.+++ +. ..+ ..+...+. ..+|+|||+.++ .....+| .|.+|++..+.
T Consensus 279 ~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~--- 355 (740)
T 4a5s_A 279 RRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD--- 355 (740)
T ss_dssp ESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS---
T ss_pred CCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc---
Confidence 22 3379999998876 11 111 34444443 788999998655 3333444 56666665432
Q ss_pred CcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-----CcEEE--EeCCCccEEEEEee----cCCcEEEEEEccC
Q 005254 479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-----RTACV--WRLPDLVSVVTFRG----HKRGIWSVEFSPV 547 (706)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i--~d~~~~~~~~~~~~----~~~~v~~~~~s~~ 547 (706)
...+......+..+.. +|++.++..+.. +...| .++..+.....+.. .........|||+
T Consensus 356 --------~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~d 426 (740)
T 4a5s_A 356 --------CTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKE 426 (740)
T ss_dssp --------CEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTT
T ss_pred --------eEecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCC
Confidence 2222233444555432 446555544432 33444 45544433323332 2356889999999
Q ss_pred CCEEEEecCC---CcEEEEEcCCCceEEEEe
Q 005254 548 DQVVITASGD---KTIKIWSISDGSCLKTFE 575 (706)
Q Consensus 548 ~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 575 (706)
+++++..... ..+.+++..+++.+..+.
T Consensus 427 g~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 427 AKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp SSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 9987655433 468888988777666554
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=7.6e-21 Score=183.79 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=123.1
Q ss_pred EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC-CCeEEEEECCCCCEEE-EecCCCcEEEEECCCCeEEEEee
Q 005254 64 TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-GPAIGMACHPSGGLLA-TAGADRKVLVWDVDGGFCTHYFK 141 (706)
Q Consensus 64 ~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~ 141 (706)
+.++++++++++++++.++.|.+||..+++.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+++.+..+.
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 346788899999999999999999999999988887543 2578999999998765 44568999999999999887776
Q ss_pred CCC------CcEEEEEEcCCCCceEEEEEecC------------CeEEEEECCCCee---EEEeecccceEEEEEEecCC
Q 005254 142 GHK------GVVSSILFHPDTDKSLLFSGSDD------------ATVRVWDLLAKKC---VATLDKHFSRVTSMAITSDG 200 (706)
Q Consensus 142 ~~~------~~v~~~~~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~ 200 (706)
.+. ..+..++|+|+++. +++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~--l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg 159 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKE--VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDG 159 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSE--EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTS
T ss_pred cccccccccccccceEECCCCCE--EEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCC
Confidence 432 23788999999886 6666654 8999999988543 33333 33468899999999
Q ss_pred CEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 201 STLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 201 ~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
+ +++++ +.|.+||..+++....++
T Consensus 160 ~-l~~~~--~~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 160 S-LYVAG--PDIYKMDVKTGKYTVALP 183 (349)
T ss_dssp C-EEEES--SSEEEECTTTCCEEEEEC
T ss_pred c-EEEcc--CcEEEEeCCCCceecccc
Confidence 9 66654 349999999887766554
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=1.4e-19 Score=174.20 Aligned_cols=175 Identities=17% Similarity=0.176 Sum_probs=125.4
Q ss_pred eEEEE--EccCCeEEE-eecCCCccEEEEEEccCCCEEEEEec---cCeEEEEECCCCe--EEEEeeccCCCeEEEEECC
Q 005254 41 SINIV--DLSNASIKS-TIEGGSDTITALALSPDDKLLFSSGH---SREIRVWDLSTLK--CLRSWKGHDGPAIGMACHP 112 (706)
Q Consensus 41 ~i~i~--d~~~~~~~~-~l~~~~~~i~~l~~s~~~~~l~s~~~---d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~ 112 (706)
.|.+| |..+++... ....+...+..++|+|||+ |++++. ++.|.+||+.+++ .+..+..+...+..++|+|
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp 95 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE 95 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET
T ss_pred CEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC
Confidence 45555 555676543 2334556678899999999 555544 6899999998776 4555566778899999999
Q ss_pred CCCEEEEec-CCCcEEEEECC-CC--eEEEEeeC---------CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC-CC
Q 005254 113 SGGLLATAG-ADRKVLVWDVD-GG--FCTHYFKG---------HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AK 178 (706)
Q Consensus 113 ~~~~l~~~~-~d~~i~vw~~~-~~--~~~~~~~~---------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~ 178 (706)
|+++|++++ .++.|.+|++. ++ +.+..+.. +...+.+++|+|+++ ++++...++.|.+|++. ++
T Consensus 96 dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 96 ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEETTTTEEEEEEECTTS
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeCCCCEEEEEEECCCC
Confidence 999988887 67899999995 33 33333322 123488999999987 57777788999999998 45
Q ss_pred eeEE--Eeecc-cceEEEEEEecCCCEEEEE-eCCCEEEEEeCC
Q 005254 179 KCVA--TLDKH-FSRVTSMAITSDGSTLISA-GRDKVVNLWDLR 218 (706)
Q Consensus 179 ~~~~--~~~~~-~~~v~~~~~~~~~~~l~~~-~~dg~i~~w~~~ 218 (706)
+... .+..+ ...+..++|+|||++++++ ..++.+.+|+++
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 217 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYD 217 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 4332 22222 2367789999999977665 467888998865
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=6.2e-20 Score=177.73 Aligned_cols=187 Identities=12% Similarity=0.130 Sum_probs=130.4
Q ss_pred cCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcc-ccc--ceeEEEeecCcceEEEEEcCCCCEEEEee-CCCc
Q 005254 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP-MNL--KAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRT 517 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~ 517 (706)
..+.+++|+|+++.++++...++.|.+|++.......... ... ............+..++|+|||+++++++ .++.
T Consensus 155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 234 (361)
T 3scy_A 155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT 234 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence 3468899999998666666778999999997543100000 000 00122333456678999999999888777 6899
Q ss_pred EEEEeCCCccE--EEEEee---cCCcEEEEEEccCCCEEEEecCC--CcEEEEEcC--CCc--eEEEEeecccCEEEEEE
Q 005254 518 ACVWRLPDLVS--VVTFRG---HKRGIWSVEFSPVDQVVITASGD--KTIKIWSIS--DGS--CLKTFEGHTSSVLRASF 586 (706)
Q Consensus 518 i~i~d~~~~~~--~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d--g~i~iwd~~--~~~--~~~~~~~~~~~i~~~~~ 586 (706)
|.+|++.+++. +..+.. +...+..++|+|||++|+++..+ +.|.+|++. +++ .+..+.. ...+..++|
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~ 313 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII 313 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE
Confidence 99999987654 222322 33457899999999998776654 889999995 444 3444443 456789999
Q ss_pred EeCCCEEEEEe-CCCCEEEE--ECCCCeEEEEec-cCCCcEEEEEEc
Q 005254 587 LTRGAQIVSCG-ADGLVKLW--TVRTGECIATYD-KHEDKIWALAVG 629 (706)
Q Consensus 587 s~~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~-~~~~~v~~~~~s 629 (706)
+|||++|++++ .++.|.+| |..+++...... .+...+.|+.|.
T Consensus 314 spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 314 TPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99999998887 56889995 555777655432 345578888885
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=9.7e-22 Score=193.03 Aligned_cols=222 Identities=11% Similarity=0.121 Sum_probs=168.3
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC---c--ccccceeEEEeecCc
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE---Q--PMNLKAKAVVAAHGK 495 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~---~--~~~~~~~~~~~~~~~ 495 (706)
+.+++|+.... .....+..+++++++. ++++++.++ +++|+......... . ............+..
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF 93 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence 45777764321 2345678899999877 788888887 89988653211000 0 000001111234567
Q ss_pred ceEEEEEcCCCCEEE----EeeCCCcEEEEeCCCc--------c---EEEEEeecCCcEEEEEEccC-CCEEEEecCCCc
Q 005254 496 DINSLAVAPNDSLVC----TGSQDRTACVWRLPDL--------V---SVVTFRGHKRGIWSVEFSPV-DQVVITASGDKT 559 (706)
Q Consensus 496 ~i~~~~~s~~~~~l~----~~~~dg~i~i~d~~~~--------~---~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~ 559 (706)
.|.+++|+|+|++|+ +++.|+.|++||+.++ + .+..+.+|...|.+++|+|+ +.+|++++.||+
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 899999999999999 7888999999998654 2 24556679999999999998 889999999999
Q ss_pred EEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCC-------CcEEEEEEcCCC
Q 005254 560 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE-------DKIWALAVGKKT 632 (706)
Q Consensus 560 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~ 632 (706)
|++||++++.......+|...|.+++|+|+|++|++|+.||.|++||++ ++....+..|. ..|.++.|++++
T Consensus 174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence 9999999987777777789999999999999999999999999999998 66666665442 389999999998
Q ss_pred CEEEE-EeCCCc------EEEEECCch
Q 005254 633 EMFAT-GGSDAL------VNLWHDSTA 652 (706)
Q Consensus 633 ~~l~~-~~~dg~------i~vw~~~~~ 652 (706)
.++++ ...||. +++|++...
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eEEEEEccCCCccCCCCceEEEEeccC
Confidence 88764 334433 899999864
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.88 E-value=1.1e-19 Score=193.03 Aligned_cols=193 Identities=13% Similarity=0.128 Sum_probs=146.2
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCcc-----EEEEEEccCCCEEEEEecc---------CeEEEEEC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDT-----ITALALSPDDKLLFSSGHS---------REIRVWDL 89 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~-----i~~l~~s~~~~~l~s~~~d---------~~i~iwd~ 89 (706)
+++|+|||++++.+ ++.|.+||+.+++....+.+|... ...++|||||++|+.++.+ +.+.+||+
T Consensus 21 ~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~ 99 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (740)
T ss_dssp CEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence 69999999999987 779999999999988888887643 2448899999999998775 66789999
Q ss_pred CCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-eeCCCCcE-----------------EEEE
Q 005254 90 STLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY-FKGHKGVV-----------------SSIL 151 (706)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v-----------------~~~~ 151 (706)
++++.. .+..|...+...+|||||++||.+. ++.|++|++.+++.... ..++...+ ..+.
T Consensus 100 ~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~ 177 (740)
T 4a5s_A 100 NKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (740)
T ss_dssp TTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred CCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceE
Confidence 999865 4666788999999999999999985 68999999988875432 22333323 3589
Q ss_pred EcCCCCceEEEEEecC------------------------------------CeEEEEECCC---Ce--eEEEee-----
Q 005254 152 FHPDTDKSLLFSGSDD------------------------------------ATVRVWDLLA---KK--CVATLD----- 185 (706)
Q Consensus 152 ~~~~~~~~~l~~~~~d------------------------------------g~i~vwd~~~---~~--~~~~~~----- 185 (706)
|||||+. |+.++.| ..|++||+.+ ++ ....+.
T Consensus 178 wSpDg~~--la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~ 255 (740)
T 4a5s_A 178 WSPNGTF--LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (740)
T ss_dssp ECTTSSE--EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred ECCCCCE--EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence 9999987 5554321 1588899988 73 223333
Q ss_pred -cccceEEEEEEecCCCEEEEEeC----CCEEEEEeCCCCc
Q 005254 186 -KHFSRVTSMAITSDGSTLISAGR----DKVVNLWDLRDYS 221 (706)
Q Consensus 186 -~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~w~~~~~~ 221 (706)
+|...+..++|+|||+.++.... +..|.+||+.+++
T Consensus 256 ~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 37778999999999986665532 2367777776554
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=5.7e-20 Score=177.64 Aligned_cols=274 Identities=10% Similarity=0.023 Sum_probs=193.0
Q ss_pred CCCcEEEEEecCCcEEEEeCCCceeeEeeeCCc-ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCC-
Q 005254 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS-EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM- 441 (706)
Q Consensus 364 ~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~- 441 (706)
+++.+++++..++.|.+||+.+++....+..+. ..+..+. ++++++.++++...++.|.+||+.+++.+..+....
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAM--MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEE--ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeE--ECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence 467788899999999999999998887776554 1344555 788888767777789999999999998887766432
Q ss_pred -----cCeEEEEEecCCCeEEEEecCC------------CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 442 -----GAVGAVAFSKKLQNFLVSGSSD------------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 442 -----~~v~~~~~~~~~~~~l~~~~~d------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
..+..++|+|+++ ++++++.+ +.|.+||+..+.. ....... .+...+.+++|+|
T Consensus 87 ~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-------~~~~~~~-~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-------AKPVRTF-PMPRQVYLMRAAD 157 (349)
T ss_dssp TTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-------BCCSEEE-ECCSSCCCEEECT
T ss_pred cccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccc-------cceeeec-cCCCcccceeECC
Confidence 3378899999998 56666654 8999999876321 0111222 2334688999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCC------------------------cEEEEEEccCCCEEEEecCC-Cc
Q 005254 505 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR------------------------GIWSVEFSPVDQVVITASGD-KT 559 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------~v~~~~~s~~~~~l~~~~~d-g~ 559 (706)
+|+ +++++ +.|.+||+.+++....+..+.. ....+++++++......... ..
T Consensus 158 dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 158 DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999 55554 3499999999988877654320 34456777654221111001 11
Q ss_pred EEEEEcCCCce-EEEEeecccCEEEEEEEe-CCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEE
Q 005254 560 IKIWSISDGSC-LKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFAT 637 (706)
Q Consensus 560 i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 637 (706)
+..+|..+++. ...+..+...+..++|+| ++++|+++ ++.|.+||+.+++.+..+..+ ..+.+++|+|++++|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~ 311 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYL 311 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEE
Confidence 22244444432 112233556788999999 99999888 889999999999988887643 35678999999999998
Q ss_pred EeCCCcEEEEECCchhH
Q 005254 638 GGSDALVNLWHDSTAAE 654 (706)
Q Consensus 638 ~~~dg~i~vw~~~~~~~ 654 (706)
++.++.|.+||+.+++.
T Consensus 312 ~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 312 GGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp ESBSSEEEEEETTTTEE
T ss_pred ecCCCeEEEEeccccce
Confidence 88899999999987653
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=1.6e-19 Score=174.80 Aligned_cols=267 Identities=7% Similarity=0.044 Sum_probs=178.7
Q ss_pred CCcEEEEeC--CCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC----CcEEEEeCCC--ceE--EEEEeCCCcCe
Q 005254 375 IEQVQVYDL--SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD----NSVRLWDSES--RCC--VGVGTGHMGAV 444 (706)
Q Consensus 375 ~~~i~~~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~--~~~--~~~~~~~~~~v 444 (706)
++.|.+|.+ .+++.......+...+..+. ++|+++. +++++.+ +.+.+|++.. ++. +.....+....
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~--~spdg~~-l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p 102 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDAEVANPSYLI--PSADGKF-VYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADP 102 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEEECSCCCSEE--ECTTSSE-EEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCE
T ss_pred CCCEEEEEEeCCCCCEEEeecccCCCCceEE--ECCCCCE-EEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCc
Confidence 457888765 44543322222444555555 8888887 5555554 7999998765 433 33344455667
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE--------eecCcceEEEEEcCCCCEEEEee-CC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV--------AAHGKDINSLAVAPNDSLVCTGS-QD 515 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~s~~~~~l~~~~-~d 515 (706)
..+++ +++.++++...++.+.+|++......... ...... ..+...+.+++|+|+|+++++++ .+
T Consensus 103 ~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 176 (361)
T 3scy_A 103 CYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPA----SDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT 176 (361)
T ss_dssp EEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSC----SEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT
T ss_pred EEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccc----ceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC
Confidence 77777 66655555567899999999753211100 000000 01223457899999999776655 47
Q ss_pred CcEEEEeCCCcc-------E------EEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcCCCce--EEEEee---
Q 005254 516 RTACVWRLPDLV-------S------VVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSC--LKTFEG--- 576 (706)
Q Consensus 516 g~i~i~d~~~~~-------~------~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~--- 576 (706)
+.|.+|++.... . ......+...+..++|+|+|+++++++ .++.|.+||+.+++. +..+..
T Consensus 177 ~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~ 256 (361)
T 3scy_A 177 DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV 256 (361)
T ss_dssp TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS
T ss_pred CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC
Confidence 899999887543 1 111223455678999999999887776 689999999987754 233322
Q ss_pred cccCEEEEEEEeCCCEEEEEeCC--CCEEEEECC--CCe--EEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 005254 577 HTSSVLRASFLTRGAQIVSCGAD--GLVKLWTVR--TGE--CIATYDKHEDKIWALAVGKKTEMFATGG-SDALVNLWHD 649 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~d--g~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~ 649 (706)
+......++|+|||++|+++..+ +.|.+|++. +++ .+..+.. ...+..++|+|||++|++++ .++.|.+|++
T Consensus 257 ~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 257 NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence 23456799999999999776665 889999985 455 4445544 55678999999999988887 6789999766
Q ss_pred Cc
Q 005254 650 ST 651 (706)
Q Consensus 650 ~~ 651 (706)
+.
T Consensus 336 d~ 337 (361)
T 3scy_A 336 DQ 337 (361)
T ss_dssp CT
T ss_pred EC
Confidence 53
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.87 E-value=1.6e-19 Score=173.00 Aligned_cols=299 Identities=13% Similarity=0.109 Sum_probs=193.3
Q ss_pred CCCCEEEEec------CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe----------cCCeEEEEEC
Q 005254 112 PSGGLLATAG------ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS----------DDATVRVWDL 175 (706)
Q Consensus 112 ~~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~i~vwd~ 175 (706)
++++++++.. .|+.|.+||..+++.+..+..+..+ .++|+||++. ++++. .++.|.+||.
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~--lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKK--IYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSE--EEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCE--EEEEEecccccccCCCCCEEEEEEC
Confidence 3566666643 3679999999999998888876555 8999999887 55544 3678999999
Q ss_pred CCCeeEEEeecc------cceEEEEEEecCCCEEEEEeC--CCEEEEEeCCCCcceee-ecCcceeeeEEeeCCCCCccc
Q 005254 176 LAKKCVATLDKH------FSRVTSMAITSDGSTLISAGR--DKVVNLWDLRDYSCKLT-VPTYEMVEAVCAIPPGSAFDS 246 (706)
Q Consensus 176 ~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--dg~i~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 246 (706)
.+++.+..+... ......++++|||++|+++.. ++.|.+||+.+++.+.. ++..... .+
T Consensus 89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~-~v----------- 156 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCW-SV----------- 156 (361)
T ss_dssp TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEE-EE-----------
T ss_pred cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcc-ee-----------
Confidence 999988877532 234667899999999998874 58899999988765544 3321110 00
Q ss_pred ccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCC
Q 005254 247 FLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQ 326 (706)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (706)
T Consensus 157 -------------------------------------------------------------------------------- 156 (361)
T 2oiz_A 157 -------------------------------------------------------------------------------- 156 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC-ceeeEeeeCCcceEEEeeee
Q 005254 327 QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSEIVLCLDTC 405 (706)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~ 405 (706)
.+.|.....+++.+.+|.+.+++... ++.....
T Consensus 157 ---------------------------------~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~------------- 190 (361)
T 2oiz_A 157 ---------------------------------IPQPNRPRSFMTICGDGGLLTINLGEDGKVASQS------------- 190 (361)
T ss_dssp ---------------------------------EECTTSSSEEEEEETTSSEEEEEECTTSSEEEEE-------------
T ss_pred ---------------------------------EEcCCCCeeEEEECCCCcEEEEEECCCCcEeeec-------------
Confidence 11111112223333333333333221 1100000
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
. ...+|+... .+ ..+.+++++. .++..+.++.+.++|+......
T Consensus 191 ------------~---~~~~~~~~~-----------~~-~~~~~~~~g~-~~~~~~~~~~v~v~d~~~~~~~-------- 234 (361)
T 2oiz_A 191 ------------R---SKQMFSVKD-----------DP-IFIAPALDKD-KAHFVSYYGNVYSADFSGDEVK-------- 234 (361)
T ss_dssp ------------E---CCCCSCTTT-----------SC-BCSCCEECSS-EEEEEBTTSEEEEEECSSSSCE--------
T ss_pred ------------c---ccceEcCCC-----------Cc-eEEEecccCC-EEEEEeCCCeEEEEEecCCCce--------
Confidence 0 000111111 11 1222345555 3444557788999998643210
Q ss_pred eeEEEee------c----CcceEEEEEcCCCCEEEEeeC-----------CCcEEEEeCCCccEEEEEeecCCcEEEEEE
Q 005254 486 AKAVVAA------H----GKDINSLAVAPNDSLVCTGSQ-----------DRTACVWRLPDLVSVVTFRGHKRGIWSVEF 544 (706)
Q Consensus 486 ~~~~~~~------~----~~~i~~~~~s~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 544 (706)
....... . ......++++|+++.++++.. .+.|.+||+.+++.+..+..+. +.+++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~ 312 (361)
T 2oiz_A 235 VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTI 312 (361)
T ss_dssp EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEE
T ss_pred ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEE
Confidence 0000000 0 011223789999888877643 3479999999999999998877 899999
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCC--ceEEEEeecccCEEEEEEEeCCC
Q 005254 545 SPVDQVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRGA 591 (706)
Q Consensus 545 s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~~~~ 591 (706)
+|||++|++++. +.|.+||..++ +.+..+..+......++++|+|+
T Consensus 313 spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 313 DQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999998887 99999999999 99988866777888999999985
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=1.1e-19 Score=178.35 Aligned_cols=175 Identities=14% Similarity=0.045 Sum_probs=135.0
Q ss_pred EEEEEccCCeEEEeecCCCccEEE-----EEEccCCCEEEEEec-cC--eEEEEECCCCeEEEEeeccCCCeEEEEECCC
Q 005254 42 INIVDLSNASIKSTIEGGSDTITA-----LALSPDDKLLFSSGH-SR--EIRVWDLSTLKCLRSWKGHDGPAIGMACHPS 113 (706)
Q Consensus 42 i~i~d~~~~~~~~~l~~~~~~i~~-----l~~s~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 113 (706)
...+|..++..+..+..|...... .+|||||++|+.++. ++ .|.+||+.+++......++...+..++|+||
T Consensus 12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT
T ss_pred eEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC
Confidence 344677888888888888776666 899999999998877 66 4889999999988777777666667889999
Q ss_pred CCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEE--EcCCCCceEEEEE----------------------ecCCe
Q 005254 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSIL--FHPDTDKSLLFSG----------------------SDDAT 169 (706)
Q Consensus 114 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~l~~~----------------------~~dg~ 169 (706)
+++|++++.++.|++||+.+++....+..+...+.... ++|++.. ++.. ..+..
T Consensus 92 g~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 92 DDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTK--LVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSE--EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCe--eccccccCcccccccccchhhhhhccCCcce
Confidence 99999999889999999999988777776666665444 4788765 4422 23478
Q ss_pred EEEEECCCCeeEEEeecccceEEEEEEec-CCCEEEEEeCCC------EEEEEeCCC
Q 005254 170 VRVWDLLAKKCVATLDKHFSRVTSMAITS-DGSTLISAGRDK------VVNLWDLRD 219 (706)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg------~i~~w~~~~ 219 (706)
|.+||+.+++... +..+...+..++|+| ||+.|+....++ .|.+++...
T Consensus 170 l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~ 225 (388)
T 3pe7_A 170 LMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG 225 (388)
T ss_dssp EEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS
T ss_pred EEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 9999999886544 445667789999999 999888776532 555555543
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.86 E-value=9.8e-19 Score=167.51 Aligned_cols=303 Identities=13% Similarity=0.095 Sum_probs=208.7
Q ss_pred CCCCEEEEee-------CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe----------ccCeEEEEECCC
Q 005254 29 SDGSFIACAC-------GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----------HSREIRVWDLST 91 (706)
Q Consensus 29 ~dg~~l~~~~-------~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~----------~d~~i~iwd~~~ 91 (706)
+|++++++.. ++.|++||..+++.+..+..+..+ .++|+|||++|+++. .++.|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 4777777765 348999999999998888877666 899999999999886 367899999999
Q ss_pred CeEEEEeecc------CCCeEEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEE-eeCCCCcEEEEEEcCCCCceEEE
Q 005254 92 LKCLRSWKGH------DGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHY-FKGHKGVVSSILFHPDTDKSLLF 162 (706)
Q Consensus 92 ~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~ 162 (706)
++.+.++... ......++|+|||++|+++.. +++|.+||+.+++.+.. +.. .+ ...+.+.|++. ..++
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~-~~~~ 167 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRP-RSFM 167 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSS-SEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCC-eeEE
Confidence 9998887643 245678999999999998863 57899999999998877 553 22 23366788764 3477
Q ss_pred EEecCCeEEEEECCC-CeeEEEe------ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeE
Q 005254 163 SGSDDATVRVWDLLA-KKCVATL------DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAV 235 (706)
Q Consensus 163 ~~~~dg~i~vwd~~~-~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 235 (706)
+.+.||.+.+|+... ++..... ..+..++ .+.+++++..++..+.++.+.++|+........-
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~--------- 237 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG--------- 237 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE---------
T ss_pred EECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecc---------
Confidence 888999999999865 5544221 1122222 3344677878888888999999998644321100
Q ss_pred EeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccC
Q 005254 236 CAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS 315 (706)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (706)
.|+..... ..... +.|.
T Consensus 238 ------------------------------------------~~~~~~~~-----------~~~~~----------~~p~ 254 (361)
T 2oiz_A 238 ------------------------------------------PWSLLNDE-----------DKAKN----------WVPG 254 (361)
T ss_dssp ------------------------------------------EEESCCHH-----------HHHTT----------CEEC
T ss_pred ------------------------------------------cccccCcc-----------ccccc----------cccC
Confidence 00000000 00000 0000
Q ss_pred CCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEe----------cCCcEEEEeCCC
Q 005254 316 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT----------NIEQVQVYDLSS 385 (706)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~~~~i~~~d~~~ 385 (706)
+. ..+++.++....+++.. ..+.|.+||+.+
T Consensus 255 g~---------------------------------------~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t 295 (361)
T 2oiz_A 255 GY---------------------------------------NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT 295 (361)
T ss_dssp CS---------------------------------------SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT
T ss_pred Ce---------------------------------------eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC
Confidence 00 01223332222222221 135799999999
Q ss_pred ceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc--eEEEEEeCCCcCeEEEEEecCCC
Q 005254 386 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR--CCVGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 386 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~ 454 (706)
.+.+..+..+. ..++. ++|+++. +++++. +.|.+||..++ +.+..+.........++++|+|+
T Consensus 296 ~~~v~~i~~~~--p~~ia--~spdg~~-l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 296 KQRVARIPGRD--ALSMT--IDQQRNL-MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TEEEEEEECTT--CCEEE--EETTTTE-EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CcEEEEEecCC--eeEEE--ECCCCCE-EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999988877 77777 8999997 666665 99999999999 99988877778889999999875
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=4.3e-19 Score=171.49 Aligned_cols=264 Identities=10% Similarity=0.075 Sum_probs=180.1
Q ss_pred CcEEEEeC--CCceeeEe--ee-CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC-CceEEEEEeC-CCcCeEEEE
Q 005254 376 EQVQVYDL--SSMSCSYV--LA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-SRCCVGVGTG-HMGAVGAVA 448 (706)
Q Consensus 376 ~~i~~~d~--~~~~~~~~--~~-~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~-~~~~v~~~~ 448 (706)
+.|.+|++ .+++.... .. .....+..++ ++|+++. +++++.+ .|.+|++. +++....... ..+.+..++
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a--~spdg~~-l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~ 89 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMT--FDHERKN-IYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRAND 89 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEE--ECTTSSE-EEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGC
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEE--ECCCCCE-EEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEE
Confidence 45666554 45544322 11 2223455565 7888887 6677766 99999987 7766543321 112356689
Q ss_pred EecCCCe-EEEEec-------------CCCeEEEEEecCCCCCCCcccccceeEEEe----ecCcceEEEEEcCCCCEEE
Q 005254 449 FSKKLQN-FLVSGS-------------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVA----AHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 449 ~~~~~~~-~l~~~~-------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~ 510 (706)
|+|+++. +++++. .++.+.+|++..... ...... .+...+.+++|+|||++|+
T Consensus 90 ~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~spdG~~l~ 160 (365)
T 1jof_A 90 ADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK---------LEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp TTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC---------EEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred ECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc---------CcceEeeEEeCCCCcceEEEECCCCCEEE
Confidence 9999884 344553 689999999974210 111111 2456789999999999888
Q ss_pred EeeC-CCcEEEEeCC-CccEE--EEEe--ecCCcEEEEEEccCCCEEEEecC-CCcEEEEEcC--CCceE---EEEee--
Q 005254 511 TGSQ-DRTACVWRLP-DLVSV--VTFR--GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS--DGSCL---KTFEG-- 576 (706)
Q Consensus 511 ~~~~-dg~i~i~d~~-~~~~~--~~~~--~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~--~~~~~---~~~~~-- 576 (706)
+++. ++.|++|++. +++.. ..+. .|...+..++|+|+|++|++++. ++.|.+|++. +++.. ..+..
T Consensus 161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 240 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC
Confidence 7764 6789999998 67543 2333 23567899999999999887765 7899999875 45543 22221
Q ss_pred -----ccc------CEEEEE-EEeCCCEEEEEeCCC------CEEEEECC-CCeEEE---EeccCCCcEEEEEEcC---C
Q 005254 577 -----HTS------SVLRAS-FLTRGAQIVSCGADG------LVKLWTVR-TGECIA---TYDKHEDKIWALAVGK---K 631 (706)
Q Consensus 577 -----~~~------~i~~~~-~s~~~~~l~~~~~dg------~i~iwd~~-~~~~~~---~~~~~~~~v~~~~~s~---~ 631 (706)
|.. .+..++ |+|||++|+++..+. .|.+|++. +++... ....+...+..++|+| |
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC
Confidence 121 478899 999999988776433 79999996 676543 2334555667899999 8
Q ss_pred CCEEEEEeCC-CcEEEEECCch
Q 005254 632 TEMFATGGSD-ALVNLWHDSTA 652 (706)
Q Consensus 632 ~~~l~~~~~d-g~i~vw~~~~~ 652 (706)
|++|++++.+ +.|.+|+++..
T Consensus 321 g~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 321 DEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEETT
T ss_pred CCEEEEEEcCCCeEEEEEEchh
Confidence 9999988864 89999998754
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=7.1e-19 Score=172.52 Aligned_cols=120 Identities=20% Similarity=0.137 Sum_probs=95.8
Q ss_pred EEEEECCCCeEEEEeeccCCCeEE-----EEECCCCCEEEEecC-CC--cEEEEECCCCeEEEEeeCCCCcEEEEEEcCC
Q 005254 84 IRVWDLSTLKCLRSWKGHDGPAIG-----MACHPSGGLLATAGA-DR--KVLVWDVDGGFCTHYFKGHKGVVSSILFHPD 155 (706)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~-d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~ 155 (706)
...+|..++..+..+..|...... .+|||||++|++++. ++ .|.+||+.+++......++...+..++|+||
T Consensus 12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT
T ss_pred eEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC
Confidence 345678888888999888776666 889999999999887 56 4899999999888777767666667889999
Q ss_pred CCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEE--EecCCCEEEE
Q 005254 156 TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA--ITSDGSTLIS 205 (706)
Q Consensus 156 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~ 205 (706)
++. |+.++.++.|++||+.+++.......+...+.... +++++++++.
T Consensus 92 g~~--l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~ 141 (388)
T 3pe7_A 92 DDA--LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVG 141 (388)
T ss_dssp SSE--EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred CCE--EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecc
Confidence 987 88888889999999999987776666665554444 4889988775
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=1.4e-19 Score=178.37 Aligned_cols=318 Identities=12% Similarity=0.013 Sum_probs=200.9
Q ss_pred EEEEECCCCeEEEEeeccCCC-----eEEEEECCCCCEEEEecCC---CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCC
Q 005254 84 IRVWDLSTLKCLRSWKGHDGP-----AIGMACHPSGGLLATAGAD---RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD 155 (706)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~ 155 (706)
....|..+++.+..+..+... +..++|||||++|+..... ..|.+||+.+++......++......+.|+|+
T Consensus 12 ~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 12 ETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD 91 (396)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT
T ss_pred heeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCC
Confidence 345588888888887765443 7788999999998887543 47899999988865544333332334789999
Q ss_pred CCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeE
Q 005254 156 TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAV 235 (706)
Q Consensus 156 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 235 (706)
++. |+..+.++.|++||+.+++.......+.. |+++|+.|+....++...+|..
T Consensus 92 g~~--l~~~~~~~~l~~~d~~~~~~~~~~~~~~~------~~~~g~~l~~~~~~~~~~~~~~------------------ 145 (396)
T 3c5m_A 92 ERA--FFYVKNELNLMKVDLETLEEQVIYTVDEE------WKGYGTWVANSDCTKLVGIEIL------------------ 145 (396)
T ss_dssp SSE--EEEEETTTEEEEEETTTCCEEEEEECCTT------EEEEEEEEECTTSSEEEEEEEE------------------
T ss_pred CCE--EEEEEcCCcEEEEECCCCCcEEEEecccc------cCCCCCEEEeccCCcccccccc------------------
Confidence 887 88888888999999988876555443332 5556655555443332222210
Q ss_pred EeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccC
Q 005254 236 CAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS 315 (706)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T Consensus 146 -------------------------------------------------------------------------------- 145 (396)
T 3c5m_A 146 -------------------------------------------------------------------------------- 145 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCC
Q 005254 316 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH 395 (706)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~ 395 (706)
T Consensus 146 -------------------------------------------------------------------------------- 145 (396)
T 3c5m_A 146 -------------------------------------------------------------------------------- 145 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEeeeeeecCCCEEEEEe-----eCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEec-CCCeEEEEecCC------
Q 005254 396 SEIVLCLDTCALSSGKILIVTG-----SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSD------ 463 (706)
Q Consensus 396 ~~~i~~~~~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------ 463 (706)
... +.|+++. ++.. ..+..|.+||+.+++..... .+...+..+.|+| +++ .++..+.+
T Consensus 146 -----~~~--~spdg~~-~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~ 215 (396)
T 3c5m_A 146 -----KRD--WQPLTSW-EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVD 215 (396)
T ss_dssp -----GGG--CCCCCSH-HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEE-EEEEEECSCSSSCS
T ss_pred -----ccc--cCCCCcc-eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCC-EEEEEecCCCCCCC
Confidence 000 2233332 1111 23446777777766654433 3556788899999 666 34433333
Q ss_pred CeEEEEEecCCCCCCCcccccceeEEEeec--CcceEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCccEEEEEeecC
Q 005254 464 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAH--GKDINSLAVAPNDSLVCTGSQD-----RTACVWRLPDLVSVVTFRGHK 536 (706)
Q Consensus 464 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~ 536 (706)
..|.+|++.... ...+..+ ...+..++|+|||++|+.++.+ +.|++||+.+++...... ..
T Consensus 216 ~~l~~~d~~~~~-----------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~ 283 (396)
T 3c5m_A 216 ARMWLVNEDGSN-----------VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP 283 (396)
T ss_dssp CCCEEEETTSCC-----------CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC
T ss_pred ceEEEEECCCCc-----------eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC
Confidence 357777775432 1111111 2357789999999988777544 449999998886544332 12
Q ss_pred CcEEEEEEcc-CCCEEEEec----------------CCCcEEEEEcCCCceEEEEeeccc-----------CEEEEEEEe
Q 005254 537 RGIWSVEFSP-VDQVVITAS----------------GDKTIKIWSISDGSCLKTFEGHTS-----------SVLRASFLT 588 (706)
Q Consensus 537 ~~v~~~~~s~-~~~~l~~~~----------------~dg~i~iwd~~~~~~~~~~~~~~~-----------~i~~~~~s~ 588 (706)
... +.|+| +|+++++++ .+..|++||+.+++.. .+..+.. .+..+.|+|
T Consensus 284 -~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~ 360 (396)
T 3c5m_A 284 -PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTP 360 (396)
T ss_dssp -SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECT
T ss_pred -CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEcc
Confidence 233 89999 999888754 3478999999887653 3444443 256679999
Q ss_pred CCCEEEEEeC-CCC--EEEEECCCCeE
Q 005254 589 RGAQIVSCGA-DGL--VKLWTVRTGEC 612 (706)
Q Consensus 589 ~~~~l~~~~~-dg~--i~iwd~~~~~~ 612 (706)
||++|+.++. ++. |+.+++.+++.
T Consensus 361 dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 361 NDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp TSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred CCCeEEEEecCCCCceEEEEEEccccc
Confidence 9999887765 454 44555555543
No 169
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.84 E-value=2.8e-16 Score=157.67 Aligned_cols=333 Identities=13% Similarity=0.039 Sum_probs=227.5
Q ss_pred cCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC--CCeEEEEeeCCCCcE
Q 005254 70 PDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD--GGFCTHYFKGHKGVV 147 (706)
Q Consensus 70 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v 147 (706)
|.+.++++...++.|.++|..+++.+.++.. ...+..++|||||+++++++.++.|.+||+. +++.+..+.. ....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCC
Confidence 4455666777899999999999999998874 3467799999999999999999999999995 8888888775 3456
Q ss_pred EEEEEc----CCCCceEEEEEecCCeEEEEECCCCeeEEEeecc----------cc-eEEEEEEecCCCEEE-EEeCCCE
Q 005254 148 SSILFH----PDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH----------FS-RVTSMAITSDGSTLI-SAGRDKV 211 (706)
Q Consensus 148 ~~~~~~----~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------~~-~v~~~~~~~~~~~l~-~~~~dg~ 211 (706)
..++|+ |||+. ++++...++.|.++|..+.+.+..+... .. .+..+..++++..++ .....|.
T Consensus 243 ~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 243 RSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred ceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 899999 68775 4445556799999999999988776422 11 466676776654333 3334566
Q ss_pred EEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeecc
Q 005254 212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 291 (706)
Q Consensus 212 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 291 (706)
|.++|..+......
T Consensus 322 v~~vd~~~~~~~~v------------------------------------------------------------------ 335 (567)
T 1qks_A 322 ILLVDYTDLNNLKT------------------------------------------------------------------ 335 (567)
T ss_dssp EEEEETTCSSEEEE------------------------------------------------------------------
T ss_pred EEEEecCCCcccee------------------------------------------------------------------
Confidence 66666543210000
Q ss_pred CccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEE
Q 005254 292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371 (706)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 371 (706)
T Consensus 336 -------------------------------------------------------------------------------- 335 (567)
T 1qks_A 336 -------------------------------------------------------------------------------- 335 (567)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-----CCcCeEE
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-----HMGAVGA 446 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~ 446 (706)
. .+. .......+. +.+++++++++...++.|.++|..+++.+..... |.+.-..
T Consensus 336 ---------~---------~i~-~~~~~~d~~--~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~ 394 (567)
T 1qks_A 336 ---------T---------EIS-AERFLHDGG--LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN 394 (567)
T ss_dssp ---------E---------EEE-CCSSEEEEE--ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE
T ss_pred ---------e---------eee-ccccccCce--ECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee
Confidence 0 000 001112223 7788888777777788999999999988776653 2221112
Q ss_pred EEEecCCCeEEEEec-CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-------CCcE
Q 005254 447 VAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-------DRTA 518 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~i 518 (706)
.++|++..+.++.. .++.|.+++....... ...++....+......-..+..+|++++|.+... .++|
T Consensus 395 -~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~---~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v 470 (567)
T 1qks_A 395 -FVHPTFGPVWATSHMGDDSVALIGTDPEGHP---DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSV 470 (567)
T ss_dssp -EEETTTEEEEEEEBSSSSEEEEEECCTTTCT---TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCE
T ss_pred -eECCCCCcEEEeCCCCCCeEEEecCCCCCCc---cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceE
Confidence 25787564555553 5689999998763211 1123344444444333355788999999998663 3589
Q ss_pred EEEeCCCc-----c-EEEEEee--------cCCcEEEEEEccCCCEEEEec-----CCCcEEEEEcCCCceEEEEee
Q 005254 519 CVWRLPDL-----V-SVVTFRG--------HKRGIWSVEFSPVDQVVITAS-----GDKTIKIWSISDGSCLKTFEG 576 (706)
Q Consensus 519 ~i~d~~~~-----~-~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~ 576 (706)
.++|+.+. . ....+.- ....+..+.|+|+|+.+..+. .++.|.|+|.++++++..+..
T Consensus 471 ~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 471 AVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp EEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 99999876 2 1233321 245789999999999887763 378999999999999888874
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.83 E-value=8.2e-17 Score=161.57 Aligned_cols=238 Identities=13% Similarity=0.073 Sum_probs=164.1
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC-----------CcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCC
Q 005254 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-----------MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 476 (706)
|+++.++++...++.+.++|..+.+.+..+... ...+..+..++++..+++....+|.|.++|.....
T Consensus 253 pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~- 331 (567)
T 1qks_A 253 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN- 331 (567)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS-
T ss_pred CCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc-
Confidence 355554555555566667776666666554321 22677888898888788888888999999986532
Q ss_pred CCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CCCcEEEEeCCCccEEEEEee-----cCCcEEEEEEccCCCE
Q 005254 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRG-----HKRGIWSVEFSPVDQV 550 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~ 550 (706)
. ..............+.|+|+|++++++. .++.|.++|+.+++.+..+.. |.+.-..+ ++|++..
T Consensus 332 ------~--~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~ 402 (567)
T 1qks_A 332 ------N--LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGP 402 (567)
T ss_dssp ------E--EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEE
T ss_pred ------c--ceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCc
Confidence 0 1111223345567889999999887765 578899999999988776654 33222222 5787554
Q ss_pred E-EEec-CCCcEEEEEcCC-------CceEEEEeecccCEEEEEEEeCCCEEEEEeC-------CCCEEEEECCCC----
Q 005254 551 V-ITAS-GDKTIKIWSISD-------GSCLKTFEGHTSSVLRASFLTRGAQIVSCGA-------DGLVKLWTVRTG---- 610 (706)
Q Consensus 551 l-~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~i~iwd~~~~---- 610 (706)
+ +++. .++.|.++|..+ .+.++++......-..+..+|++++|.+... .+.|.++|+.+.
T Consensus 403 v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g 482 (567)
T 1qks_A 403 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDG 482 (567)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSS
T ss_pred EEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccc
Confidence 4 4443 468999999987 6778888765444345788999999988663 359999999876
Q ss_pred -e-EEEEec--------cCCCcEEEEEEcCCCCEEEEEe-----CCCcEEEEECCchhHH
Q 005254 611 -E-CIATYD--------KHEDKIWALAVGKKTEMFATGG-----SDALVNLWHDSTAAER 655 (706)
Q Consensus 611 -~-~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~vw~~~~~~~~ 655 (706)
. ....+. .-...+..+.|+++|+++..+. .++.|.|+|..+.+..
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 483 SDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp SCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred cCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 2 112332 1245788999999999877653 3799999999887654
No 171
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=2.8e-18 Score=165.82 Aligned_cols=236 Identities=13% Similarity=0.112 Sum_probs=163.8
Q ss_pred cceEEcCCCCEEEEeeCCeEEEEEcc-CCeEEEeec--CCCccEEEEEEccCCCE--EEEEe-------------ccCeE
Q 005254 23 GPLVVSSDGSFIACACGESINIVDLS-NASIKSTIE--GGSDTITALALSPDDKL--LFSSG-------------HSREI 84 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~~i~i~d~~-~~~~~~~l~--~~~~~i~~l~~s~~~~~--l~s~~-------------~d~~i 84 (706)
..++|+|||++|+++..+.|.+|++. +++...... .+ +...+++|+|||++ ++++. .++.+
T Consensus 43 ~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v 121 (365)
T 1jof_A 43 SWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG 121 (365)
T ss_dssp SEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred cEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence 36999999999988887799999997 787654332 11 23566899999994 55553 68899
Q ss_pred EEEECC-CCeEEEEee----ccCCCeEEEEECCCCCEEEEec-CCCcEEEEECC-CCeEE--EEee--CCCCcEEEEEEc
Q 005254 85 RVWDLS-TLKCLRSWK----GHDGPAIGMACHPSGGLLATAG-ADRKVLVWDVD-GGFCT--HYFK--GHKGVVSSILFH 153 (706)
Q Consensus 85 ~iwd~~-~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~-~d~~i~vw~~~-~~~~~--~~~~--~~~~~v~~~~~~ 153 (706)
.+|++. +++....+. .+...+.+++|+|||++|+++. .++.|.+|+++ +++.. ..+. .|...+..++|+
T Consensus 122 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s 201 (365)
T 1jof_A 122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH 201 (365)
T ss_dssp EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC
T ss_pred EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC
Confidence 999997 566554444 2457899999999999888765 36789999998 77643 2333 246679999999
Q ss_pred CCCCceEEEEEe-cCCeEEEEECC--CCeeE---EEee-------cccc------eEEEEE-EecCCCEEEEEeCCC---
Q 005254 154 PDTDKSLLFSGS-DDATVRVWDLL--AKKCV---ATLD-------KHFS------RVTSMA-ITSDGSTLISAGRDK--- 210 (706)
Q Consensus 154 ~~~~~~~l~~~~-~dg~i~vwd~~--~~~~~---~~~~-------~~~~------~v~~~~-~~~~~~~l~~~~~dg--- 210 (706)
|+++. +++++ .++.|.+|++. +++.. ..+. +|.. .+..++ |+|||++|+++..+.
T Consensus 202 pdg~~--l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~ 279 (365)
T 1jof_A 202 PTGNY--LYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE 279 (365)
T ss_dssp TTSSE--EEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT
T ss_pred CCCCE--EEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCC
Confidence 99876 55555 47899999865 45542 1221 1222 588999 999999988776432
Q ss_pred ---EEEEEeCC-CCcceee---ec-CcceeeeEEeeC---CCCCcccccccccchhhhccccccceEEEEecC-CCeEEE
Q 005254 211 ---VVNLWDLR-DYSCKLT---VP-TYEMVEAVCAIP---PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE-RGIVRM 278 (706)
Q Consensus 211 ---~i~~w~~~-~~~~~~~---~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ 278 (706)
.|.+|++. +++.... .+ .......++++| ++. .+++++. ++.|.+
T Consensus 280 ~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~-----------------------~l~v~~~~~~~v~v 336 (365)
T 1jof_A 280 LQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE-----------------------WMAITDDQEGWLEI 336 (365)
T ss_dssp SCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT-----------------------EEEEECSSSCEEEE
T ss_pred CCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC-----------------------EEEEEEcCCCeEEE
Confidence 89999986 4443321 11 111233344444 332 5666655 589999
Q ss_pred EECCCC
Q 005254 279 WNADSA 284 (706)
Q Consensus 279 ~~~~~~ 284 (706)
|+.+..
T Consensus 337 ~~~~~~ 342 (365)
T 1jof_A 337 YRWKDE 342 (365)
T ss_dssp EEEETT
T ss_pred EEEchh
Confidence 998765
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=2.5e-18 Score=169.37 Aligned_cols=284 Identities=12% Similarity=0.085 Sum_probs=185.1
Q ss_pred cceEEcCCCCEEEEeeCC----eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 23 GPLVVSSDGSFIACACGE----SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~----~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
..++|||||++|++.... .|.+||+.+++......++......+.|||||++|+.++.++.|.+||+.+++.....
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~ 118 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIY 118 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE
Confidence 468999999999988653 6999999998876554444333344889999999999999989999999998876666
Q ss_pred eccCCCeEE-------------------EEECCCCCEEEEe-----cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcC
Q 005254 99 KGHDGPAIG-------------------MACHPSGGLLATA-----GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP 154 (706)
Q Consensus 99 ~~~~~~v~~-------------------~~~s~~~~~l~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~ 154 (706)
..+...... +.|+|++++++.. ..+..|.+||+.+++..... .+...+..+.|+|
T Consensus 119 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp 197 (396)
T 3c5m_A 119 TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRP 197 (396)
T ss_dssp ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEET
T ss_pred ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECC
Confidence 545443322 3567888877654 35678999999988765544 4677899999999
Q ss_pred -CCCceEEEEEecC------CeEEEEECCCCeeEEEeecc-cceEEEEEEecCCCEEEEEeCC-----CEEEEEeCCCCc
Q 005254 155 -DTDKSLLFSGSDD------ATVRVWDLLAKKCVATLDKH-FSRVTSMAITSDGSTLISAGRD-----KVVNLWDLRDYS 221 (706)
Q Consensus 155 -~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~~~~ 221 (706)
+++. ++..+.+ ..|.+||+.+++........ ...+..++|+|+|++|+.++.+ +.|++||+.+++
T Consensus 198 ~dg~~--l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 198 FDDST--VGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp TEEEE--EEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred CCCCE--EEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 6655 3333332 46889998766543322221 3368889999999988777544 559999998876
Q ss_pred ceeeecCcceeeeEEeeC-CCCCcccccccccchhhhccccccceEEEEec----------------CCCeEEEEECCCC
Q 005254 222 CKLTVPTYEMVEAVCAIP-PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG----------------ERGIVRMWNADSA 284 (706)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~~~~~~~~ 284 (706)
......... .. ..+++ ++. .++..+ .+..|++||..++
T Consensus 276 ~~~l~~~~~-~~-~~~s~~dg~-----------------------~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 276 NEEVMVMPP-CS-HLMSNFDGS-----------------------LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEEEEECCS-EE-EEEECSSSS-----------------------EEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred eEEeeeCCC-CC-CCccCCCCc-----------------------eEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 543322222 22 56666 664 233222 3578999999877
Q ss_pred eEEeeccCccccccccCCCccceeEEEEccCCCeeEEEee-CCceEEEEee
Q 005254 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA-DQQLLLYTTV 334 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ 334 (706)
...........................++|+++.++..+. ++...+|...
T Consensus 331 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 331 SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 4322111110000000000112345678999998877664 4556666554
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=2.4e-18 Score=181.54 Aligned_cols=152 Identities=13% Similarity=0.108 Sum_probs=113.4
Q ss_pred EeecCCCccEEEEEEccCCCEEEEE--eccCeEEEEECCCCeEEEEeeccCCCeE---------EEEEC--CCCCE-EEE
Q 005254 54 STIEGGSDTITALALSPDDKLLFSS--GHSREIRVWDLSTLKCLRSWKGHDGPAI---------GMACH--PSGGL-LAT 119 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~---------~~~~s--~~~~~-l~~ 119 (706)
..+.+|...+..++|++++.++++. +.++...||....+.....+..|...+. ...|+ |||++ |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3466788999999999887666766 5588899999755555667777766666 56565 99998 777
Q ss_pred ecC-CCcEEEEECC--C-CeEEEEeeC-----CCCcEEEEEEcCCCCceEEEEEecC----------CeEEEEECCC---
Q 005254 120 AGA-DRKVLVWDVD--G-GFCTHYFKG-----HKGVVSSILFHPDTDKSLLFSGSDD----------ATVRVWDLLA--- 177 (706)
Q Consensus 120 ~~~-d~~i~vw~~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~--- 177 (706)
++. +..|.+|++. + ++ ...+.. |...+..++|+|||+. |+.++.+ ..|++||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~--l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGE--VWCMAEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTE--EEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred EECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCE--EEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence 654 5667777766 3 44 444544 6778999999999987 7766665 5899999987
Q ss_pred ---CeeEEEee-cccceEEEEEEecCCCEEEEEeCC
Q 005254 178 ---KKCVATLD-KHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 178 ---~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
++. ..+. .+...+..++|+|||++|+.++.+
T Consensus 174 ~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~ 208 (662)
T 3azo_A 174 ADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWD 208 (662)
T ss_dssp TCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred ccCCce-eEEEecCCCcccCceECCCCCEEEEEECC
Confidence 554 4455 556788889999999999887754
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=8.4e-17 Score=152.65 Aligned_cols=241 Identities=11% Similarity=0.136 Sum_probs=182.7
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCC------------------------CcEEEEeCCCceEEEEEe-CCCcCeEEEEEec
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKD------------------------NSVRLWDSESRCCVGVGT-GHMGAVGAVAFSK 451 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~d------------------------g~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~ 451 (706)
+.+.+++ +.++++. +++...+ +.|.+||..+++.+.... .+......+++++
T Consensus 24 ~~v~~va--~d~~G~l-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 24 GQVSGVA--LDSKNNL-VIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp SCEEEEE--ECTTCCE-EEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred CCceEEE--ECCCCCE-EEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence 4466666 6677665 5555544 479999999888876654 3456789999999
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE---------eecCcceEEEEEcC-CCCEEEEee-CCCcEEE
Q 005254 452 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV---------AAHGKDINSLAVAP-NDSLVCTGS-QDRTACV 520 (706)
Q Consensus 452 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~s~-~~~~l~~~~-~dg~i~i 520 (706)
++. ++++...++.|++|+...... ....+ ..+-.....++++| ++.++++.+ .++.|++
T Consensus 101 ~g~-l~v~d~~~~~v~~~~~~g~~~---------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 101 DGN-YWVTDVALHQVFKLDPHSKEG---------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ 170 (329)
T ss_dssp TSC-EEEEETTTTEEEEECTTCSSC---------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred CCC-EEEEECCCCEEEEEeCCCCeE---------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence 988 888888899999999754310 01111 12334678999999 788888876 6899999
Q ss_pred EeCCCccEEEEEeecC----------CcEEEEEEccC-CCEEEEecCCCcEEEEEcCCCceEEEEee--cccCEEEEEEE
Q 005254 521 WRLPDLVSVVTFRGHK----------RGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEG--HTSSVLRASFL 587 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~----------~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s 587 (706)
|+ .+++.+..+.... .....++++|+ +.++++...++.|++||..+++.+..+.. +...+..++|+
T Consensus 171 ~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 249 (329)
T 3fvz_A 171 FS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYI 249 (329)
T ss_dssp EC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEE
T ss_pred Ec-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeec
Confidence 99 5677777665322 34889999998 77777878899999999988998888743 45678889999
Q ss_pred e------CCCEEEEEeCCCCEEEEECCCCeEEEEec---cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 588 T------RGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 588 ~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
| +|+..++...+..|++||+.+++.+..+. .+......++++|+|.++++...++.|++|++..
T Consensus 250 pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 250 PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 8 33333333345589999999999998873 6777899999999998888888899999999864
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.79 E-value=1.3e-16 Score=153.63 Aligned_cols=168 Identities=19% Similarity=0.234 Sum_probs=117.2
Q ss_pred ceEEcCCCCEEEEee----------CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc---C--eEEEEE
Q 005254 24 PLVVSSDGSFIACAC----------GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS---R--EIRVWD 88 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~----------~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d---~--~i~iwd 88 (706)
..++ ||+.+++.. ...|.+||+.+++... + ..+.+++|||||++||.++.+ + .|.+||
T Consensus 19 ~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~ 91 (347)
T 2gop_A 19 DPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVAD 91 (347)
T ss_dssp EEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEE
T ss_pred cceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEE
Confidence 3566 999998864 2369999999887543 4 567899999999999987653 2 488889
Q ss_pred CCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCC---------------------------CcEEEEECCCCeEEEEee
Q 005254 89 LSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGAD---------------------------RKVLVWDVDGGFCTHYFK 141 (706)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------------------------~~i~vw~~~~~~~~~~~~ 141 (706)
+.+++.......+ . +..++|+|||++|+.++.+ ..|.+||+.+++.+..+.
T Consensus 92 ~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~ 169 (347)
T 2gop_A 92 LETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE 169 (347)
T ss_dssp TTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE
T ss_pred CCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec
Confidence 9888876655544 4 9999999999999988632 579999999988745555
Q ss_pred CCCCcEEEEEEcCCCCceEEEEEecCC-------eEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 142 GHKGVVSSILFHPDTDKSLLFSGSDDA-------TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 142 ~~~~~v~~~~~~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
. . .+..++|+|++ +++++..++ ...+|.+.+++. ..+..+ ..+..+ +|+|++|+.++.+
T Consensus 170 ~-~-~~~~~~~spdg---~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~ 235 (347)
T 2gop_A 170 K-P-RFSSGIWHRDK---IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKP 235 (347)
T ss_dssp E-E-TTCEEEEETTE---EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECC
T ss_pred C-C-CcccccCCCCe---EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEcc
Confidence 4 3 78899999987 466665432 334443334443 333333 444433 7777777666543
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=4e-16 Score=145.28 Aligned_cols=238 Identities=11% Similarity=0.165 Sum_probs=176.1
Q ss_pred CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC------CCcCeEEEEEe-cCCCeEEEEec-CCCeE
Q 005254 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG------HMGAVGAVAFS-KKLQNFLVSGS-SDHTI 466 (706)
Q Consensus 395 ~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~~l~~~~-~d~~i 466 (706)
+...+.++. +.+++.. +++...++.|.+||.. ++.+..+.. +...+..+++. +++. ++++.. .++.|
T Consensus 28 ~~~~p~~v~--~~~~g~l-~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~~~~i 102 (286)
T 1q7f_A 28 QFTEPSGVA--VNAQNDI-IVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTHQI 102 (286)
T ss_dssp CBSCEEEEE--ECTTCCE-EEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGCEE
T ss_pred ccCCCceEE--ECCCCCE-EEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCCCCEE
Confidence 444566666 6777764 7777888999999987 555555532 34578899995 5654 555553 38899
Q ss_pred EEEEecCCCCCCCcccccceeEEEe-ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe--ecCCcEEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVE 543 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~ 543 (706)
.+|+.... ....+. .+...+..++++|+|+++++...++.|.+||. +++.+..+. .+...+..++
T Consensus 103 ~~~d~~g~-----------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~ 170 (286)
T 1q7f_A 103 QIYNQYGQ-----------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVV 170 (286)
T ss_dssp EEECTTSC-----------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEE
T ss_pred EEECCCCc-----------EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEE
Confidence 99984321 222221 23356889999999998888778899999996 455665554 3445789999
Q ss_pred EccCCCEEEEecCCCcEEEEEcCCCceEEEEeec--ccCEEEEEEEeCCCEEEEEeCCC-CEEEEECCCCeEEEEeccCC
Q 005254 544 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH--TSSVLRASFLTRGAQIVSCGADG-LVKLWTVRTGECIATYDKHE 620 (706)
Q Consensus 544 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~ 620 (706)
++++++++++...++.|++||. +++.+..+..+ ...+..++++++|+++++...++ .|.+||. +++.+..+..+.
T Consensus 171 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~ 248 (286)
T 1q7f_A 171 VNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV 248 (286)
T ss_dssp ECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS
T ss_pred ECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC
Confidence 9999998888888999999997 56666666543 35788999999999888887776 9999995 677777776543
Q ss_pred C--cEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 621 D--KIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 621 ~--~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
. .+.+++++|+|+++++ +.|+.|++|++...
T Consensus 249 ~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 3 4789999999987776 67999999998653
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.78 E-value=2.6e-17 Score=173.57 Aligned_cols=295 Identities=11% Similarity=0.038 Sum_probs=193.1
Q ss_pred ecccCceeeEeeEeCCCCcEEEEE--ecCCcEEEEeCCCceeeEeeeCCcceEE---------EeeeeeecCCCE-EEEE
Q 005254 349 LVGYNEEILDLKFLGEEEQYLAVA--TNIEQVQVYDLSSMSCSYVLAGHSEIVL---------CLDTCALSSGKI-LIVT 416 (706)
Q Consensus 349 ~~~~~~~v~~~~~~~~~~~~l~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~i~---------~~~~~~~~~~~~-~l~~ 416 (706)
+.++...+..+++++ +..+++.. ..++...+|....+.....+..+...+. ...+..+|+++. ++++
T Consensus 19 ~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 19 VASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 445667778888874 33444444 3467888888544444455555554433 232112388887 5666
Q ss_pred eeCCCcEEEEeCC--C-ceEEEEEeC-----CCcCeEEEEEecCCCeEEEEecCC----------CeEEEEEecCCCCCC
Q 005254 417 GSKDNSVRLWDSE--S-RCCVGVGTG-----HMGAVGAVAFSKKLQNFLVSGSSD----------HTIKVWSFDGLSDDA 478 (706)
Q Consensus 417 ~~~dg~i~i~d~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------~~i~i~~~~~~~~~~ 478 (706)
...+..|.+++.. . +. ...+.. +...+..++|+|+|+ .|+.++.+ ..|++|++.......
T Consensus 98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 5557778888876 3 43 334444 567889999999998 56666655 578999987610000
Q ss_pred CcccccceeEEEe-ecCcceEEEEEcCCCCEEEEeeCC--------CcEEEEeCC-Cc---cEEEEEeecCCcEEEEEEc
Q 005254 479 EQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQD--------RTACVWRLP-DL---VSVVTFRGHKRGIWSVEFS 545 (706)
Q Consensus 479 ~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~v~~~~~s 545 (706)
......+. .+...+..++|||||++|+.++.+ ..|++||+. ++ +.......|...+..++|+
T Consensus 176 -----~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s 250 (662)
T 3azo_A 176 -----RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA 250 (662)
T ss_dssp -----GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred -----CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence 00112222 344567889999999999987755 379999998 56 4444445567889999999
Q ss_pred cCCCEEEEecCCC--cEEEEEcCCCceEEEEeecccC--------EEEEEEEeCCCEEEEEeCCCCEEEE--ECCCCeEE
Q 005254 546 PVDQVVITASGDK--TIKIWSISDGSCLKTFEGHTSS--------VLRASFLTRGAQIVSCGADGLVKLW--TVRTGECI 613 (706)
Q Consensus 546 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~--------i~~~~~s~~~~~l~~~~~dg~i~iw--d~~~~~~~ 613 (706)
|||++++++..++ .|.+||+.+++.......+... +..++|+++++++++++. +.+++| |+.+++ +
T Consensus 251 pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~ 328 (662)
T 3azo_A 251 PDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-L 328 (662)
T ss_dssp TTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-E
T ss_pred CCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-E
Confidence 9999888888888 5666776666654443333222 567899999999999998 999999 665665 6
Q ss_pred EEeccCCCcEEEE-EEcCCCCEEEEEeCCCc--EEEEECCchh
Q 005254 614 ATYDKHEDKIWAL-AVGKKTEMFATGGSDAL--VNLWHDSTAA 653 (706)
Q Consensus 614 ~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg~--i~vw~~~~~~ 653 (706)
..+..|...+..+ +++++.-++++++.+.. |.+|++.+++
T Consensus 329 ~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 329 VDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp EECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7788888888877 55433333445555544 4445555543
No 178
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.78 E-value=5.5e-12 Score=135.18 Aligned_cols=562 Identities=10% Similarity=0.061 Sum_probs=326.5
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecC-----CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEG-----GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~-----~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
+|+-.++| +|-+|..+.+..||-.+-+....-.. ....|.+|...++|.+.+ ++.+ .+..||..+.+... +
T Consensus 47 ~I~qD~~G-~lWigT~~GL~ryDG~~f~~~~~~~~~~~~l~~n~I~~i~~d~~g~lWi-gT~~-Gl~~yd~~~~~f~~-~ 122 (795)
T 4a2l_A 47 SIDQDKRG-NMWFATYDGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVWI-GTRD-GLSRYDEEKDIFQN-F 122 (795)
T ss_dssp EEEECTTS-CEEEEETTEEEEECSSCEEEECCCTTCTTSCSCSCEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEE-E
T ss_pred EEEEcCCC-CEEEeecCcCcccCCCceEEEeCCCCCCCcccccceeEEEECCCCCEEE-EeCC-chheeCCCCCeEEe-c
Confidence 57777787 55577778888898543222111000 135799999999987654 4445 48999988776433 2
Q ss_pred ecc-CC---CeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCC-CCc-EEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 99 KGH-DG---PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH-KGV-VSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 99 ~~~-~~---~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~-v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
... .. .|.++...+++.+.+.. . +.|..||.++++.......+ ... |.++...+++. +..++.++.|..
T Consensus 123 ~~~~~~~~~~i~~i~~d~~g~lwi~t-~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~ 197 (795)
T 4a2l_A 123 FYEKNGKHLQVNGIEEISPEQLLIST-P-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYT 197 (795)
T ss_dssp CCEETTEECCCCEEEEEETTEEEEEE-T-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTE---EEEEESSSCEEE
T ss_pred cccccCCCceEEEEEECCCCCEEEEE-C-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCC---EEEEECCCCEEE
Confidence 211 11 28889888888766544 3 45899998877643321111 112 88888877654 555776555999
Q ss_pred EECCCCeeEEEe-ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC--------cceeeeEEeeCCCCC
Q 005254 173 WDLLAKKCVATL-DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT--------YEMVEAVCAIPPGSA 243 (706)
Q Consensus 173 wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 243 (706)
|+..+++..... ..+...|.++...+++. |..++.++-+..|+..+.+....... ...+.++...+++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-- 274 (795)
T 4a2l_A 198 YSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQN-- 274 (795)
T ss_dssp EETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTS--
T ss_pred EeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCC--
Confidence 998776644321 12345688888888775 55555444488899877553322111 1223333333333
Q ss_pred cccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEe
Q 005254 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 323 (706)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 323 (706)
.+..+... -|..|+..++.......... ....-....+.++...++ ..+.+++
T Consensus 275 ----------------------~lWigt~~-Gl~~~~~~~~~~~~~~~~~~---~~~~l~~~~i~~i~~D~~-g~lWigt 327 (795)
T 4a2l_A 275 ----------------------RLWIGTFN-DLNIYHEGTDSFASYSSNPV---ENGSLSQRSVRSIFMDSQ-GGMWLGT 327 (795)
T ss_dssp ----------------------CEEEEESS-CEEEEETTTTEEEEECCCTT---STTSCSSSCEEEEEECTT-SCEEEEE
T ss_pred ----------------------CEEEEeCC-hhheEcCCCCeEEEEecCCC---CCCCCCCCcEEEEEEeCC-cCEEEEE
Confidence 34444444 47888887765433221110 001112344556555554 4577788
Q ss_pred eCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeC--------C
Q 005254 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--------H 395 (706)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~--------~ 395 (706)
.++-+..++.....-....... ....-....|.++... ....+-+++.++.+..|+..++........ .
T Consensus 328 ~~~Gl~~~~~~~~~~~~~~~~~-~~~~l~~~~V~~i~~d--~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~ 404 (795)
T 4a2l_A 328 YFGGLNYYHPIRNRFKNIRNIP-YKNSLSDNVVSCIVED--KDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIG 404 (795)
T ss_dssp SSSCEEEECGGGGSSEEECCCT-TSSSCSCSSEEEEEEC--TTSCEEEEESSSCEEEECTTTCCEEEECCC------CCS
T ss_pred CCCCeEEeCCCcccceEEcCCC-CCCCCCCCeeEEEEEC--CCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCC
Confidence 7777888765433211100000 0000123346666553 344566788888899999887655433211 2
Q ss_pred cceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe----CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEe
Q 005254 396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT----GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 396 ~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
...|.++. ..+++.. +..|+.++-+..+|..+++...... .....|.++...+++. |..|+.+ -+..|+.
T Consensus 405 ~~~v~~i~--~d~~g~~-lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lwigt~~-Gl~~~~~ 478 (795)
T 4a2l_A 405 SNNIKAVY--VDEKKSL-VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN--LWLGTLS-ALVRFNP 478 (795)
T ss_dssp CSCEEEEE--EETTTTE-EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC--EEEEESS-CEEEEET
T ss_pred CccEEEEE--EcCCCCE-EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC--EEEEecC-ceeEEeC
Confidence 34577765 5566663 4556677779999998876544322 2346788998888876 4444444 4788886
Q ss_pred cCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe-------ecCCcEEEEEE
Q 005254 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR-------GHKRGIWSVEF 544 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~~~~ 544 (706)
........... ..........|.++...++|.+.+.. . +-+..||..+++. .+. .....|.++..
T Consensus 479 ~~~~~~~~~~~----~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~ 550 (795)
T 4a2l_A 479 EQRSFTTIEKE----KDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYE 550 (795)
T ss_dssp TTTEEEECCBC----TTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEE
T ss_pred CCCeEEEcccc----ccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEE
Confidence 54310000000 00001123568899999988766644 4 4588898876654 332 13457899999
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCCceEEEEee----cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccC-
Q 005254 545 SPVDQVVITASGDKTIKIWSISDGSCLKTFEG----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH- 619 (706)
Q Consensus 545 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~- 619 (706)
.++|.+.+... .| +..||..+++.. .+.. ....|.++...++|++.+++ . +-|..||..+++.. .+...
T Consensus 551 d~~g~lWigT~-~G-l~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~d 624 (795)
T 4a2l_A 551 ASNGIIWVGTR-EG-FYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESD 624 (795)
T ss_dssp CTTSCEEEEES-SC-EEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGG
T ss_pred CCCCCEEEEeC-CC-ceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcC
Confidence 99888665543 45 889998766443 3322 13468888888888766655 4 44888998877643 34322
Q ss_pred ---CCcE--EEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 620 ---EDKI--WALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 620 ---~~~v--~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
...+ .++...++|++.+ |+.+| +..++.
T Consensus 625 Gl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p 657 (795)
T 4a2l_A 625 GLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRP 657 (795)
T ss_dssp TCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECG
T ss_pred CCccccCccCceeECCCCeEEE-ecCCc-eEEEcH
Confidence 1222 4677788887555 66677 455553
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=1.4e-16 Score=151.22 Aligned_cols=235 Identities=13% Similarity=0.195 Sum_probs=178.1
Q ss_pred ceEEcCCCCEEEEeeCC-------------------------eEEEEEccCCeEEEeec-CCCccEEEEEEccCCCEEEE
Q 005254 24 PLVVSSDGSFIACACGE-------------------------SINIVDLSNASIKSTIE-GGSDTITALALSPDDKLLFS 77 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-------------------------~i~i~d~~~~~~~~~l~-~~~~~i~~l~~s~~~~~l~s 77 (706)
+|+++|+|+++++..++ .|.+||..+++.+..+. ++-.....++++|+|+++++
T Consensus 28 ~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~ 107 (329)
T 3fvz_A 28 GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVT 107 (329)
T ss_dssp EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEE
T ss_pred EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEE
Confidence 59999999999888776 59999999898876654 44567899999999998888
Q ss_pred EeccCeEEEEECCCCe-EEEEe---------eccCCCeEEEEECC-CCCEEEEec-CCCcEEEEECCCCeEEEEeeCC--
Q 005254 78 SGHSREIRVWDLSTLK-CLRSW---------KGHDGPAIGMACHP-SGGLLATAG-ADRKVLVWDVDGGFCTHYFKGH-- 143 (706)
Q Consensus 78 ~~~d~~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~s~-~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~-- 143 (706)
...++.|++||..... .+..+ .++-.....++|+| ++.++++.+ .++.|++|+ .+++.+..+...
T Consensus 108 d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~ 186 (329)
T 3fvz_A 108 DVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESS 186 (329)
T ss_dssp ETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECC
T ss_pred ECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCC
Confidence 8888999999986542 45555 23445789999999 788888876 689999999 567666666422
Q ss_pred --------CCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEee--cccceEEEEEEec------CCCEEEEEe
Q 005254 144 --------KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD--KHFSRVTSMAITS------DGSTLISAG 207 (706)
Q Consensus 144 --------~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~------~~~~l~~~~ 207 (706)
-..+..++++|++. .++++...++.|++||..+++.+..+. .+...+..++|+| +|+..++..
T Consensus 187 ~~~~~~~~~~~p~gia~d~~~g-~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~ 265 (329)
T 3fvz_A 187 GSSPRPGQFSVPHSLALVPHLD-QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQ 265 (329)
T ss_dssp SSSCCTTEESCEEEEEEETTTT-EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCS
T ss_pred CCCCCCcccCCCcEEEEECCCC-EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccC
Confidence 23489999999733 357777788999999998899888773 4556788999999 333222233
Q ss_pred CCCEEEEEeCCCCcceeeec----CcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCC
Q 005254 208 RDKVVNLWDLRDYSCKLTVP----TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (706)
Q Consensus 208 ~dg~i~~w~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 283 (706)
.+..|++|+..+++.+..+. .......+++.+++. .+++...++.|+.|+...
T Consensus 266 ~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~-----------------------lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 266 EPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT-----------------------VYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE-----------------------EEEEESSSCCEEEEEEEE
T ss_pred CCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC-----------------------EEEEECCCCEEEEEeCCc
Confidence 45589999999998887763 233466777777763 577778888999998653
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=3.8e-15 Score=138.70 Aligned_cols=230 Identities=12% Similarity=0.215 Sum_probs=168.6
Q ss_pred cceEEcCCCCEEEEeeC-CeEEEEEccCCeEEEeec------CCCccEEEEEE-ccCCCEEEEEec-cCeEEEEECCCCe
Q 005254 23 GPLVVSSDGSFIACACG-ESINIVDLSNASIKSTIE------GGSDTITALAL-SPDDKLLFSSGH-SREIRVWDLSTLK 93 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~-~~i~i~d~~~~~~~~~l~------~~~~~i~~l~~-s~~~~~l~s~~~-d~~i~iwd~~~~~ 93 (706)
.+++++++|+++++... +.|.+||.. ++.+..+. +|...+.++++ .++++++++... ++.|.+|| .+++
T Consensus 33 ~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~ 110 (286)
T 1q7f_A 33 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQ 110 (286)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSC
T ss_pred ceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCc
Confidence 37999999998777654 489999976 55555553 24467899999 477776666643 88999999 6777
Q ss_pred EEEEeec-cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee--CCCCcEEEEEEcCCCCceEEEEEecCCeE
Q 005254 94 CLRSWKG-HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 94 ~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 170 (706)
.+..+.. +...+..++++|+++++++...++.|.+||.+ ++.+..+. .+...+..++++|+++ ++++...++.|
T Consensus 111 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i 187 (286)
T 1q7f_A 111 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE--IFISDNRAHCV 187 (286)
T ss_dssp EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE--EEEEEGGGTEE
T ss_pred EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC--EEEEECCCCEE
Confidence 7777643 44678999999999988887778999999965 55555554 3556789999999865 46777778999
Q ss_pred EEEECCCCeeEEEeecc--cceEEEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCcc---eeeeEEeeCCCCCc
Q 005254 171 RVWDLLAKKCVATLDKH--FSRVTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTYE---MVEAVCAIPPGSAF 244 (706)
Q Consensus 171 ~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 244 (706)
++||. +++.+..+..+ ...+..++++++|+++++...++ .|.+|+.. ++.+..+.... ....+++.+++.
T Consensus 188 ~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~-- 263 (286)
T 1q7f_A 188 KVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGS-- 263 (286)
T ss_dssp EEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTE--
T ss_pred EEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCc--
Confidence 99997 55666666433 35789999999998888777775 99999954 44444443321 244666666652
Q ss_pred ccccccccchhhhccccccceEEEEecCCCeEEEEECCC
Q 005254 245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (706)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 283 (706)
.+++ +.++.|++|+...
T Consensus 264 ---------------------l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 264 ---------------------VVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp ---------------------EEEE-ETTTEEEEEECSC
T ss_pred ---------------------EEEE-CCCCeEEEEEccc
Confidence 3444 6789999998754
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.74 E-value=3.7e-15 Score=157.65 Aligned_cols=188 Identities=12% Similarity=0.045 Sum_probs=133.0
Q ss_pred CCCCEEEEeeCC------eEEEEEccCCeEEEee------cCCCccEEEEEEccCCCEEEEEeccC-----eEEEEECCC
Q 005254 29 SDGSFIACACGE------SINIVDLSNASIKSTI------EGGSDTITALALSPDDKLLFSSGHSR-----EIRVWDLST 91 (706)
Q Consensus 29 ~dg~~l~~~~~~------~i~i~d~~~~~~~~~l------~~~~~~i~~l~~s~~~~~l~s~~~d~-----~i~iwd~~~ 91 (706)
|||+++++.... .|.+.+..+++....+ .+|...+..++|||||++||.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 899999887632 3555555555543322 23445789999999999999775543 899999999
Q ss_pred CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCc----------------EEEEECCCCe----EEEEeeCCCCcEEEEE
Q 005254 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRK----------------VLVWDVDGGF----CTHYFKGHKGVVSSIL 151 (706)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------i~vw~~~~~~----~~~~~~~~~~~v~~~~ 151 (706)
++.+.....+ ..+..++|+|||+.|+.++.++. |++|++.+++ .+.....|...+..+.
T Consensus 161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 9887643322 23678999999999999887665 9999998875 2223233556688999
Q ss_pred EcCCCCceEEEEEec-----CCeEEEEECCC------Ce-eEEEeecccceEEEEEEecCCCEEEEEeCC----CEEEEE
Q 005254 152 FHPDTDKSLLFSGSD-----DATVRVWDLLA------KK-CVATLDKHFSRVTSMAITSDGSTLISAGRD----KVVNLW 215 (706)
Q Consensus 152 ~~~~~~~~~l~~~~~-----dg~i~vwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~w 215 (706)
|+||++. |+..+. +..|++||+.+ +. ....+..+...+.. .|+++|+.|+..+.. +.|.+|
T Consensus 240 ~SpDg~~--l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 240 LSDDGRY--VLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp ECTTSCE--EEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EcCCCCE--EEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 9999987 444433 57899999976 43 35556556555544 488899888777643 357777
Q ss_pred eCCCC
Q 005254 216 DLRDY 220 (706)
Q Consensus 216 ~~~~~ 220 (706)
++.++
T Consensus 317 d~~~~ 321 (710)
T 2xdw_A 317 DFTDP 321 (710)
T ss_dssp ETTSC
T ss_pred eCCCC
Confidence 77654
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.74 E-value=2.9e-15 Score=140.09 Aligned_cols=238 Identities=11% Similarity=0.080 Sum_probs=173.7
Q ss_pred CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
.+.....++. +.++++.+++++..++.|..|+..++ ...+..+...+.++++++++. ++++...++.|.+|+...
T Consensus 25 ~~~~~~eg~~--~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 25 DGFTWTEGPV--YVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQREPG 99 (296)
T ss_dssp CCCSSEEEEE--EEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEECSTT
T ss_pred cCCccccCCe--EeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEEEcCCC
Confidence 3344455555 88999866888899999999999987 566667778899999999987 677766778999999865
Q ss_pred CCCCCCcccccceeEEEe----ecCcceEEEEEcCCCCEEEE----ee-------------CCCcEEEEeCCCccEEEEE
Q 005254 474 LSDDAEQPMNLKAKAVVA----AHGKDINSLAVAPNDSLVCT----GS-------------QDRTACVWRLPDLVSVVTF 532 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~ 532 (706)
+. ...... .....+..++++|+|+++++ |+ ..+.|..++.. ++ ...+
T Consensus 100 g~----------~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~ 167 (296)
T 3e5z_A 100 GE----------WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAP 167 (296)
T ss_dssp CC----------EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEE
T ss_pred Cc----------EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEe
Confidence 42 111111 11234678999999998887 33 13456666654 43 3445
Q ss_pred eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC-CCce---EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS-DGSC---LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 533 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
..+......++|+|+++.|++.+.++.|++|++. +++. ...+..+...+..++++++|+++++. ++.|.+||..
T Consensus 168 ~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 168 IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 5566778999999999999777888999999996 4554 23333344566789999999876666 7889999986
Q ss_pred CCeEEEEeccCCCcEEEEEE-cCCCCEEEEEeCCCcEEEEECCchh
Q 005254 609 TGECIATYDKHEDKIWALAV-GKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 609 ~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
++.+..+..+.. +++++| +|+++.|.+++.++ +.-++..+..
T Consensus 246 -g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 246 -GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp -SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred -CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence 888888887777 899999 68999888888764 4445555443
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.74 E-value=2.6e-15 Score=144.47 Aligned_cols=242 Identities=10% Similarity=0.101 Sum_probs=164.6
Q ss_pred CCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC--C--cEEEEeCCCceEEEEEeCCCcCeEEEEEe
Q 005254 375 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--N--SVRLWDSESRCCVGVGTGHMGAVGAVAFS 450 (706)
Q Consensus 375 ~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d--g--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 450 (706)
++.|.+||+.+++.... ..+..+. ++|+++.++++...+ + .|.+|++.+++.......+ . +..++|+
T Consensus 42 ~~~l~~~d~~~~~~~~l-----~~~~~~~--~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~ws 112 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI-----ENATMPR--ISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWN 112 (347)
T ss_dssp EEEEEEEETTTCCEEEE-----ESCEEEE--ECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEEC
T ss_pred cceEEEEeCCCCceEEc-----ccCCCeE--ECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeEC
Confidence 46789999988765433 3455555 889999844444332 3 4888899888766655443 3 9999999
Q ss_pred cCCCeEEEEecC--------------------------CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 451 KKLQNFLVSGSS--------------------------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 451 ~~~~~~l~~~~~--------------------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
|+++.++++... ...|.+|++..+. ....+.. . .+..++|+|
T Consensus 113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~----------~~~~l~~-~-~~~~~~~sp 180 (347)
T 2gop_A 113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE----------VIEEFEK-P-RFSSGIWHR 180 (347)
T ss_dssp TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE----------EEEEEEE-E-TTCEEEEET
T ss_pred CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe----------EEeeecC-C-CcccccCCC
Confidence 999854444322 3568888876542 1122222 2 788999999
Q ss_pred CCCEEEEeeCCC-------cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCC--------CcEEEEEcCCCc
Q 005254 505 NDSLVCTGSQDR-------TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD--------KTIKIWSISDGS 569 (706)
Q Consensus 505 ~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~ 569 (706)
|| +++++..++ ...+|.+.+++ ...+..+ ..+..+ +|+|++|+.++.+ ..|.+|| +++
T Consensus 181 dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~ 253 (347)
T 2gop_A 181 DK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE 253 (347)
T ss_dssp TE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC
T ss_pred Ce-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc
Confidence 99 777776542 33444443444 3444444 555544 9999988877654 3688888 565
Q ss_pred eEEEEeecccCEEE-EEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcE-EEE
Q 005254 570 CLKTFEGHTSSVLR-ASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALV-NLW 647 (706)
Q Consensus 570 ~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i-~vw 647 (706)
.......+...+.. +.|+ |+ ++++++.++.+++| +.+++.... ..+...|.+++|+| .++++++.++.. .+|
T Consensus 254 ~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~-~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 254 VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI-AKGRHWIMGFDVDE--IVVYLKETATRLRELF 327 (347)
T ss_dssp EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE-ECSSSEEEEEEESS--SEEEEEECSSSCCEEE
T ss_pred eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE-ecCCCeEEeeeeeC--cEEEEEcCCCChHHhe
Confidence 54444455667876 8999 88 88999999999999 877766444 34578899999999 677777777765 788
Q ss_pred ECC
Q 005254 648 HDS 650 (706)
Q Consensus 648 ~~~ 650 (706)
.++
T Consensus 328 ~~~ 330 (347)
T 2gop_A 328 TWD 330 (347)
T ss_dssp EES
T ss_pred EeC
Confidence 775
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=5.5e-15 Score=141.17 Aligned_cols=265 Identities=12% Similarity=0.056 Sum_probs=181.4
Q ss_pred eeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEE
Q 005254 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 435 (706)
Q Consensus 356 v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 435 (706)
+..+.|.+. ...++....++.++.| .......+..+...+.++. +.++++ +++++..++.|.+||..+++...
T Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 8 LPTLFYSGK-SNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLN--FDRQGQ-LFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCBCCSCGG-GGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEE--ECTTSC-EEEEETTTCEEEEECTTTCCEEE
T ss_pred cceeeecCC-ccceeEEeecccCccc---ccceeEEEeccCccccCcE--ECCCCC-EEEEECCCCEEEEEeCCCCcEEE
Confidence 445555543 3333333556777777 3344555666666667776 677776 47778889999999999887766
Q ss_pred EEeCCCcCeEEEEEecCCCeEEEEecCC----CeEEEEEecCCCCCCCcccccceeEEE--eecCcceEEEEEcCCCCEE
Q 005254 436 VGTGHMGAVGAVAFSKKLQNFLVSGSSD----HTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLV 509 (706)
Q Consensus 436 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l 509 (706)
....+...+.+++++++++ ++++...+ +.|.+||...... .... ......+..++++|+|+++
T Consensus 81 ~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~----------~~~~~~~~~~~~~~~i~~d~~g~l~ 149 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNL----------QDIIEDLSTAYCIDDMVFDSKGGFY 149 (333)
T ss_dssp EEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSC----------EEEECSSSSCCCEEEEEECTTSCEE
T ss_pred EeeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEE----------EEEEccCccCCcccceEECCCCCEE
Confidence 5545677899999999987 66665555 6899998765421 1111 1234568899999999887
Q ss_pred EEeeC------CCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEE-EecCCCcEEEEEcCC-CceEEEE-------
Q 005254 510 CTGSQ------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI-TASGDKTIKIWSISD-GSCLKTF------- 574 (706)
Q Consensus 510 ~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~------- 574 (706)
++... .+.|..+|..+++... +..+...+..++|+|+++.|+ +...++.|.+||+.+ +..+..+
T Consensus 150 v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~ 228 (333)
T 2dg1_A 150 FTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY 228 (333)
T ss_dssp EEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred EEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe
Confidence 76653 3556677765544433 333445678999999998664 445678999999964 3333221
Q ss_pred -eecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCC------cEEEEEEcCCCCEEEEEeCC
Q 005254 575 -EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED------KIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 575 -~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~~d 641 (706)
.++ ..+..++++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+||++.|+.++.+
T Consensus 229 ~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 229 FTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred cCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 111 36778999999998888878899999998 5777777754433 68899999998777655554
No 185
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.73 E-value=2.1e-11 Score=130.77 Aligned_cols=524 Identities=10% Similarity=0.079 Sum_probs=301.4
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCC-Cc---cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGG-SD---TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK 99 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~-~~---~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 99 (706)
+|...++|.+.+ ++.+.+..||..+.+... +... .. .|.++...++|.+.+. +. +.|..||.++++......
T Consensus 92 ~i~~d~~g~lWi-gT~~Gl~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g~lwi~-t~-~gl~~~~~~~~~~~~~~~ 167 (795)
T 4a2l_A 92 IVKTDSQGRVWI-GTRDGLSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPEQLLIS-TP-EGLIMFDIKESKFIDDSF 167 (795)
T ss_dssp EEEECTTSCEEE-EESSCEEEEETTTTEEEE-ECCEETTEECCCCEEEEEETTEEEEE-ET-TEEEEEETTTTEEECSSS
T ss_pred EEEECCCCCEEE-EeCCchheeCCCCCeEEe-ccccccCCCceEEEEEECCCCCEEEE-EC-CceEEEECCCCEEEeccC
Confidence 577788887665 445679999988776543 2211 11 1889999999876654 34 458999988766433211
Q ss_pred cc-CCC-eEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC
Q 005254 100 GH-DGP-AIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF-KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176 (706)
Q Consensus 100 ~~-~~~-v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 176 (706)
.+ ... |.++...+++.+.+ ++.++.|..|+..+++..... ..+...|.++...+++. +..|+.++-+..||..
T Consensus 168 ~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~ 243 (795)
T 4a2l_A 168 STAMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR---IWVATEGAGLFLINPK 243 (795)
T ss_dssp CHHHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE---EEEEEBSSCEEEEETT
T ss_pred CCCCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC---EEEEECCCCeEEEeCC
Confidence 11 123 88898888886555 555445999998877654332 12356788888877654 5556655459999987
Q ss_pred CCeeEEEeec-------ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC--------cceeeeEEeeCCC
Q 005254 177 AKKCVATLDK-------HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT--------YEMVEAVCAIPPG 241 (706)
Q Consensus 177 ~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 241 (706)
+++....... ....|.++...++|. |..|+.+| |.+|+..+......... ...+.++....++
T Consensus 244 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g 321 (795)
T 4a2l_A 244 TKEIKNYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG 321 (795)
T ss_dssp TTEEEEECCCTTCTTSCSCSBEEEEEECTTSC-EEEEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS
T ss_pred CCeEEEeecCCCCccccCCCeEEEEEEcCCCC-EEEEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc
Confidence 7665433221 135699999988886 55555554 88899876654322111 1123333333333
Q ss_pred CCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEE
Q 005254 242 SAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC 321 (706)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 321 (706)
.+..++.++-|..++.............. ...-....+.++...++ ..+.+
T Consensus 322 ------------------------~lWigt~~~Gl~~~~~~~~~~~~~~~~~~----~~~l~~~~V~~i~~d~~-g~lWi 372 (795)
T 4a2l_A 322 ------------------------GMWLGTYFGGLNYYHPIRNRFKNIRNIPY----KNSLSDNVVSCIVEDKD-KNLWI 372 (795)
T ss_dssp ------------------------CEEEEESSSCEEEECGGGGSSEEECCCTT----SSSCSCSSEEEEEECTT-SCEEE
T ss_pred ------------------------CEEEEECCCCeEEeCCCcccceEEcCCCC----CCCCCCCeeEEEEECCC-CCEEE
Confidence 35556666667777765443221111000 01112334555555444 45777
Q ss_pred EeeCCceEEEEeeeccccceeeEEeeEe-cccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee----CCc
Q 005254 322 VTADQQLLLYTTVEVPEKKMELILSKRL-VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA----GHS 396 (706)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~----~~~ 396 (706)
++.++-+..|+.....-........... .-....|.++...+ ++..+.+++.++.+..+|..+++...... ...
T Consensus 373 Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~ 451 (795)
T 4a2l_A 373 GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVN 451 (795)
T ss_dssp EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSC
T ss_pred EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCC
Confidence 8888778888755332111000000000 01234566666543 44547777777889999998776543322 123
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC------CCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
..+.++. ..+++.. ..|+. +.+.+||..+++....... ....|.++...+++. +..++. +-+..|+
T Consensus 452 ~~v~~i~--~d~~g~l--wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~--lWigt~-~Gl~~~~ 523 (795)
T 4a2l_A 452 ENVYAIL--PDGEGNL--WLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKR--LWIGGE-EGLSVFK 523 (795)
T ss_dssp SCEEEEE--ECSSSCE--EEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCC--EEEEES-SCEEEEE
T ss_pred CeeEEEE--ECCCCCE--EEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCC--EEEEeC-CceEEEe
Confidence 4577765 5555554 34444 4588899888765443221 236788999888887 333444 4588888
Q ss_pred ecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee----cCCcEEEEEEcc
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG----HKRGIWSVEFSP 546 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~s~ 546 (706)
...... . ..... .........|.++...++|.+.+. +.+ -+..||..+.+.. .+.. ....|.++...+
T Consensus 524 ~~~~~~-~---~~~~~-~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~ 595 (795)
T 4a2l_A 524 QEGLDI-Q---KASIL-PVSNVTKLFTNCIYEASNGIIWVG-TRE-GFYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDS 595 (795)
T ss_dssp EETTEE-E---ECCCS-CSCGGGGSCEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEE-EECGGGTCSCSCEEEEEECT
T ss_pred CCCCeE-E---EecCC-CCCCCCCCeeEEEEECCCCCEEEE-eCC-CceeECCCCCcEE-EeCCCCCCchhheEEEEECC
Confidence 765321 0 00000 000113456889999998876554 444 5888998766433 3322 234688999998
Q ss_pred CCCEEEEecCCCcEEEEEcCCCceEEEEeeccc----CE--EEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 547 VDQVVITASGDKTIKIWSISDGSCLKTFEGHTS----SV--LRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 547 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~i--~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
+|.+.+++ ..| |..||..+++ ...+....+ .+ .++...++|++ ..|+.+| +..++..
T Consensus 596 ~g~lWi~t-~~G-l~~~~~~~~~-~~~~~~~dGl~~~~f~~~~~~~~~~G~l-~~g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 596 FGRLWLST-NRG-ISCFNPETEK-FRNFTESDGLQSNQFNTASYCRTSVGQM-YFGGING-ITTFRPE 658 (795)
T ss_dssp TSCEEEEE-TTE-EEEEETTTTE-EEEECGGGTCSCSCEEEEEEEECTTSCE-EEEETTE-EEEECGG
T ss_pred CCCEEEEc-CCc-eEEEcCCCCc-EEEcCCcCCCccccCccCceeECCCCeE-EEecCCc-eEEEcHH
Confidence 88866655 444 8889987654 334432222 22 45566677754 4456667 5555543
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.72 E-value=9.3e-15 Score=138.16 Aligned_cols=258 Identities=9% Similarity=-0.002 Sum_probs=184.4
Q ss_pred CCcEEEEeCCCceeeEeee------CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEE
Q 005254 375 IEQVQVYDLSSMSCSYVLA------GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448 (706)
Q Consensus 375 ~~~i~~~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 448 (706)
++.|.++|..+++....+. ........+. + +++.+.++...++.|.+||..+++.+..+. .......++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~--~--~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~ 90 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMV--I--RDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIH 90 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEE--E--ETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEE--E--ECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEE
Confidence 6899999999988765431 1112234443 3 345556777778999999999999988875 346788999
Q ss_pred EecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecC-----cceEEEEEcCCCCEEEEee-CCCcEEEEe
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG-----KDINSLAVAPNDSLVCTGS-QDRTACVWR 522 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~-~dg~i~i~d 522 (706)
++++++ +.++...++.|.+||..+.+ ......... .....+++ .+++++++.. .++.|.++|
T Consensus 91 ~~~~g~-lyv~~~~~~~v~~iD~~t~~----------~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD 158 (328)
T 3dsm_A 91 FLSDEK-AYVTQIWDYRIFIINPKTYE----------ITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKID 158 (328)
T ss_dssp EEETTE-EEEEEBSCSEEEEEETTTTE----------EEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEE
T ss_pred EeCCCe-EEEEECCCCeEEEEECCCCe----------EEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEE
Confidence 999874 55555578999999987642 222222111 14556777 3444444433 488999999
Q ss_pred CCCccEEEEEeecCCcEEEEEEccCCCEEEEecCC----------CcEEEEEcCCCceEEEEeec-ccCEEEEEEEeCCC
Q 005254 523 LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD----------KTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGA 591 (706)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~ 591 (706)
..+++....+... .....++++|+|++++++..+ +.|.++|..+++....+... ......++|+|+++
T Consensus 159 ~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~ 237 (328)
T 3dsm_A 159 TETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD 237 (328)
T ss_dssp TTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC
T ss_pred CCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC
Confidence 9999888877643 345689999999987777655 78999999999888777533 23688999999999
Q ss_pred EEEEEeCCCCEEEEECCCCeEEEE--eccCCCcEEEEEEcCC-CCEEEEE----eCCCcEEEEECCchh
Q 005254 592 QIVSCGADGLVKLWTVRTGECIAT--YDKHEDKIWALAVGKK-TEMFATG----GSDALVNLWHDSTAA 653 (706)
Q Consensus 592 ~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~-~~~l~~~----~~dg~i~vw~~~~~~ 653 (706)
+|.++.. .|.+||..+++.... +..+......++++|+ +.+.++. ..++.|.+|+.. ++
T Consensus 238 ~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 238 TLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp EEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred EEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 9988765 899999998876421 1122456889999994 5555555 578999999987 54
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.72 E-value=1.3e-15 Score=160.54 Aligned_cols=186 Identities=12% Similarity=-0.041 Sum_probs=125.5
Q ss_pred cCCCCEEEEeeCC------eEEEEEccCCeEEEeec------CCCccEEEEEEccCCCEEEEE-----eccCeEEEEECC
Q 005254 28 SSDGSFIACACGE------SINIVDLSNASIKSTIE------GGSDTITALALSPDDKLLFSS-----GHSREIRVWDLS 90 (706)
Q Consensus 28 s~dg~~l~~~~~~------~i~i~d~~~~~~~~~l~------~~~~~i~~l~~s~~~~~l~s~-----~~d~~i~iwd~~ 90 (706)
+|||+++++.... .|.+.+..+++....+. +|...+.+++|||||++||.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 4899999887642 35666655665444433 456689999999999999943 335689999999
Q ss_pred CCeEE-EEeeccCCCeEEEEECCCCCEEEEecCCCc-------------EEEEECCCCe----EEEEeeCCCCcEEEEEE
Q 005254 91 TLKCL-RSWKGHDGPAIGMACHPSGGLLATAGADRK-------------VLVWDVDGGF----CTHYFKGHKGVVSSILF 152 (706)
Q Consensus 91 ~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------i~vw~~~~~~----~~~~~~~~~~~v~~~~~ 152 (706)
+++.+ .... .......++|+|||+.|+.++.+.. |++|++.++. ++.....+...+..+.|
T Consensus 156 tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 156 SGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp TCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred CCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence 99875 2111 1111267999999999999987765 9999998875 44444456678899999
Q ss_pred cCCCCceEEEEEecCC----eEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC----CCEEEEEeCCC
Q 005254 153 HPDTDKSLLFSGSDDA----TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR----DKVVNLWDLRD 219 (706)
Q Consensus 153 ~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~w~~~~ 219 (706)
+|||+. ++..+.++ .|.+|+..+++. ..+..+...+....+ ++|. ++..+. ++.|.+|++.+
T Consensus 235 SpDG~~--l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~ 304 (695)
T 2bkl_A 235 SRDGKY--LFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAK 304 (695)
T ss_dssp CTTSCC--EEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTB
T ss_pred CCCCCE--EEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCC
Confidence 999987 55555444 677777655543 344445455555555 5666 444443 45666666543
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.72 E-value=6.1e-15 Score=134.63 Aligned_cols=211 Identities=12% Similarity=0.100 Sum_probs=168.0
Q ss_pred EEEEEeeCCCcEEEEeCCCceEEEEEeCCC-cCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE
Q 005254 412 ILIVTGSKDNSVRLWDSESRCCVGVGTGHM-GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 490 (706)
.++++++.++.|.+||.++++.+..+..+. ..+.+++++|+|+ +++ +.++.|..||. .++ ....+
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~----------~~W~~ 71 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGR----------ELWNI 71 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSC----------EEEEE
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCC----------EEEEE
Confidence 348999999999999999999999988776 5789999999987 566 45778998887 332 33334
Q ss_pred eec-CcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCccEEEEEee------cCCcEEEEEEccCCCEEEEecCCCcEEE
Q 005254 491 AAH-GKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVTFRG------HKRGIWSVEFSPVDQVVITASGDKTIKI 562 (706)
Q Consensus 491 ~~~-~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~i 562 (706)
... ...+.++.+.++|+++++.+. ++.+..+|. +++.+..+.. +......+++.++|+++++...++.|..
T Consensus 72 ~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~ 150 (276)
T 3no2_A 72 AAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVRE 150 (276)
T ss_dssp ECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEE
T ss_pred cCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEE
Confidence 333 346788999999999999887 778888885 7777776652 2224556678999999999999999999
Q ss_pred EEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCC------CcEEEEEEcCCCCEEE
Q 005254 563 WSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE------DKIWALAVGKKTEMFA 636 (706)
Q Consensus 563 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~ 636 (706)
||.+ |+.+.++..+ ..+..+.+.++|+.+++++.++.|..+|..+|+.+..+..+. ..+..+...++|..++
T Consensus 151 ~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v 228 (276)
T 3no2_A 151 IAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI 228 (276)
T ss_dssp ECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred ECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence 9987 9999888754 445567888999999999988899999999999999886432 2378889999999888
Q ss_pred EEe
Q 005254 637 TGG 639 (706)
Q Consensus 637 ~~~ 639 (706)
+..
T Consensus 229 ~~~ 231 (276)
T 3no2_A 229 CNW 231 (276)
T ss_dssp EEE
T ss_pred Eec
Confidence 763
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.71 E-value=3.9e-14 Score=132.32 Aligned_cols=119 Identities=18% Similarity=0.064 Sum_probs=92.8
Q ss_pred EEEECCCCCEEEEecC-----CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE--------ecCCeEEEE
Q 005254 107 GMACHPSGGLLATAGA-----DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG--------SDDATVRVW 173 (706)
Q Consensus 107 ~~~~s~~~~~l~~~~~-----d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~--------~~dg~i~vw 173 (706)
.....|+++++++... ++.|.+.|..+++.+..+..-..+ . ++++||++..+++.. ..++.|.+|
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3456799999888765 579999999999999988865555 4 999999988444331 246789999
Q ss_pred ECCCCeeEEEeeccc-------ceEEEEEEecCCCEEEEEeC--CCEEEEEeCCCCcceeeec
Q 005254 174 DLLAKKCVATLDKHF-------SRVTSMAITSDGSTLISAGR--DKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 174 d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--dg~i~~w~~~~~~~~~~~~ 227 (706)
|..+++.+..+.-.. .....++|+|||++++++.. ++.|.++|+.+++.+.+++
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~ 177 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD 177 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 999999888775321 23556899999999998874 6899999999888776654
No 190
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=6.6e-10 Score=118.88 Aligned_cols=572 Identities=11% Similarity=0.063 Sum_probs=325.5
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCC--------CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEE
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGG--------SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL 95 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~--------~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 95 (706)
+|+-.++| +|-+|..+.+..||-.+-+.... ... ...|.+|...++|..|..++.++.+..||..+.+..
T Consensus 23 ~I~qD~~G-~lWigT~~GL~ryDG~~f~~~~~-~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~ 100 (781)
T 3v9f_A 23 SITQDKQG-FLWFATEEGLNKFDGTRFITYYK-EEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFS 100 (781)
T ss_dssp EEEECTTS-CEEEEESSCEEEECSSSEEEECC-CSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEE
T ss_pred EEEECCCC-CEEEccCCcCccccCCceEEEEc-CCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceECCCCCeEE
Confidence 57777777 46677777888898554222211 111 246999999999884555666756999999887654
Q ss_pred EEe-e---c---cCCCeEEEEECC--CCCEEEEecCCCcEEEEECCCCeEEEEee-----CCCCcEEEEEEcCCCCceEE
Q 005254 96 RSW-K---G---HDGPAIGMACHP--SGGLLATAGADRKVLVWDVDGGFCTHYFK-----GHKGVVSSILFHPDTDKSLL 161 (706)
Q Consensus 96 ~~~-~---~---~~~~v~~~~~s~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l 161 (706)
... . . ....|.++.... ++. |..++.++.|..+|..+++...... .....|.++...+++. +
T Consensus 101 ~~~~~~~~~~~l~~~~i~~i~~d~~~~g~-lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~---l 176 (781)
T 3v9f_A 101 VYQYNPEDPQSLITNDVTHITSSVQAGKG-LWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGK---L 176 (781)
T ss_dssp EECCCTTCSSSCSCSCEEEEEECSSTTSE-EEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTE---E
T ss_pred eeccccCCCCCcccCcceEEEecCccCCC-EEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCCC---E
Confidence 321 1 0 123688998887 665 4445534558999988776543311 1234588888776654 5
Q ss_pred EEEecCCeEEEEECCCCeeEEEeec-------ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC------
Q 005254 162 FSGSDDATVRVWDLLAKKCVATLDK-------HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT------ 228 (706)
Q Consensus 162 ~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~------ 228 (706)
..++.++-|..||..+++....... ....|.++...++|.+ ..++.+ -+..||..+.+.......
T Consensus 177 wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-wigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~ 254 (781)
T 3v9f_A 177 YIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNI-WIGTSK-GLALFNANTETFTNFHNNPGNIHG 254 (781)
T ss_dssp EEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCE-EEEETT-EEEEEETTTTEEEC----------
T ss_pred EEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCE-EEEeCC-cHheECCCCCcEEEEEcCCCcccc
Confidence 6677775699999877654332111 1246888888888764 445555 588999876543321111
Q ss_pred --cceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcc----ccccccCC
Q 005254 229 --YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV----TISFEMDD 302 (706)
Q Consensus 229 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~ 302 (706)
...+..+....++ .+..+...+-|..++..+........... .......-
T Consensus 255 l~~~~i~~i~~d~~g------------------------~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l 310 (781)
T 3v9f_A 255 ALSSYIFSIKQLKDN------------------------KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSL 310 (781)
T ss_dssp -CCCCEEEEEECTTS------------------------EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSB
T ss_pred ccCceEEEEEECCCC------------------------CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCC
Confidence 1123333332332 45566665567778877664322111000 00000111
Q ss_pred CccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEe--eEecccCceeeEeeEeCCCCcEEEEEecCCcEEE
Q 005254 303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS--KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV 380 (706)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~ 380 (706)
....+.++....++ .+-+++.++-+..++.............. ....-....|.++...+ ...+.+++.++.+..
T Consensus 311 ~~~~v~~i~~D~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~lWigt~~~Gl~~ 387 (781)
T 3v9f_A 311 SNASARYIFQDSFN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG--QGKLWIGTDGGGINV 387 (781)
T ss_dssp SSSCEEEEEECSSC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT--TSCEEEEEBSSCEEE
T ss_pred CCCeEEEEEEeCCC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC--CCCEEEEeCCCcEEE
Confidence 23345555555544 57778877778777655432111110000 00011234466665543 345667776778999
Q ss_pred EeCCCceeeEee---eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe--CCCcCeEEEEEecCCCe
Q 005254 381 YDLSSMSCSYVL---AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--GHMGAVGAVAFSKKLQN 455 (706)
Q Consensus 381 ~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~ 455 (706)
++..+....... ......|.++. ..+++. +..|+.++-+..++..+++...... .....|.++...+++.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~v~~i~--~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~- 462 (781)
T 3v9f_A 388 FENGKRVAIYNKENRELLSNSVLCSL--KDSEGN--LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK- 462 (781)
T ss_dssp EETTEEEEECC-----CCCSBEEEEE--ECTTSC--EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-
T ss_pred EECCCCeEEEccCCCCCCCcceEEEE--ECCCCC--EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-
Confidence 998765443221 12334566664 444554 4556766779999988776543321 2356788888888765
Q ss_pred EEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee-
Q 005254 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG- 534 (706)
Q Consensus 456 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 534 (706)
+..++. +-+..++............. . .......|.++...++|.+.+ |+.++-+..||..+++.. .+..
T Consensus 463 -lwigt~-~Gl~~~~~~~~~~~~~~~~~--~---~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~ 533 (781)
T 3v9f_A 463 -IWIGTH-AGVFVIDLASKKVIHHYDTS--N---SQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVR-KFNQY 533 (781)
T ss_dssp -EEEEET-TEEEEEESSSSSCCEEECTT--T---SSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEE-EECTT
T ss_pred -EEEEEC-CceEEEeCCCCeEEecccCc--c---cccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEE-EccCC
Confidence 444555 45888886654211000000 0 001135688999999887655 444344788887665433 3321
Q ss_pred ---cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeec----ccCEEEEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 535 ---HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH----TSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 535 ---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
....|.++...++|.+.+.. .+|.+..||..+++. ..+... ...|.++...++|++.++ +.+| |..++.
T Consensus 534 ~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~ 609 (781)
T 3v9f_A 534 EGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYIT 609 (781)
T ss_dssp TTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEET
T ss_pred CCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEEC
Confidence 23568999999888865554 467448888876653 333321 235778888888876655 4555 888898
Q ss_pred CCCeEEEEecc---CC-C--cEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 608 RTGECIATYDK---HE-D--KIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 608 ~~~~~~~~~~~---~~-~--~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
.+++.. .+.. -. . ...++...++|++++ |+.+| +..++...
T Consensus 610 ~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 610 SKKCFY-TYDHSNNIPQGSFISGCVTKDHNGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp TTTEEE-EECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE-EEEECSCC
T ss_pred CCCceE-EecccCCccccccccCceEECCCCEEEE-ECCCc-eEEEChhh
Confidence 776543 3321 11 1 234677788887555 66677 55666543
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.71 E-value=8.9e-15 Score=136.81 Aligned_cols=209 Identities=15% Similarity=0.050 Sum_probs=151.1
Q ss_pred ceEEcCCCC-EEEEeeC-CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeecc
Q 005254 24 PLVVSSDGS-FIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101 (706)
Q Consensus 24 ~~~~s~dg~-~l~~~~~-~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 101 (706)
.++|+|+|+ +++++.. +.|..||..++ ...+..+...+.+++++|+|+++++...++.|.+||.++++........
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~ 109 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSF 109 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEE
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc
Confidence 799999999 5555544 48999999887 5566667788999999999998887777789999999888765443321
Q ss_pred ----CCCeEEEEECCCCCEEEE----ec-------------CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceE
Q 005254 102 ----DGPAIGMACHPSGGLLAT----AG-------------ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL 160 (706)
Q Consensus 102 ----~~~v~~~~~s~~~~~l~~----~~-------------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 160 (706)
...+..++++|+|+++++ ++ ..+.|..++.. ++ +..+..+......++|+|+++.
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~-- 185 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNL-- 185 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCE--
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCE--
Confidence 235678999999998887 33 12456666655 44 3444556777899999999876
Q ss_pred EEEEecCCeEEEEECC-CCee---EEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEE
Q 005254 161 LFSGSDDATVRVWDLL-AKKC---VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236 (706)
Q Consensus 161 l~~~~~dg~i~vwd~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 236 (706)
+++.+.++.|.+|++. +++. ...+..+.+.+.+++++++|++.++. ++.|.+|+.+ ++....+.....+..++
T Consensus 186 lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~ 262 (296)
T 3e5z_A 186 LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLC 262 (296)
T ss_dssp EEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEE
T ss_pred EEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEE
Confidence 5777788999999986 4544 23333345567789999999855555 7889999986 66666655444466666
Q ss_pred ee-CCC
Q 005254 237 AI-PPG 241 (706)
Q Consensus 237 ~~-~~~ 241 (706)
+. +++
T Consensus 263 f~~~d~ 268 (296)
T 3e5z_A 263 FGGPEG 268 (296)
T ss_dssp EESTTS
T ss_pred EECCCC
Confidence 63 444
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.71 E-value=2.6e-14 Score=133.52 Aligned_cols=147 Identities=18% Similarity=0.078 Sum_probs=113.5
Q ss_pred EEEccCCCEEEEEec-----cCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEec----------CCCcEEEEE
Q 005254 66 LALSPDDKLLFSSGH-----SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG----------ADRKVLVWD 130 (706)
Q Consensus 66 l~~s~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~vw~ 130 (706)
....|+++.+.+... ++.|.+.|..+++.+.++.....+ . ++++|||++++++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455789999888765 579999999999999999866566 4 99999999888775 357899999
Q ss_pred CCCCeEEEEeeCCC-------CcEEEEEEcCCCCceEEEEEe--cCCeEEEEECCCCeeEEEeecccceEEEEEEecCCC
Q 005254 131 VDGGFCTHYFKGHK-------GVVSSILFHPDTDKSLLFSGS--DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS 201 (706)
Q Consensus 131 ~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 201 (706)
..+++.+..+.-.. .....++|+|||+. ++.+. .++.|.++|+.+++.+.++.... . ...+....+
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~--~~~~P~g~~ 190 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C--YHIFPTAPD 190 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEECCS-E--EEEEEEETT
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcEEEEEECCC-c--ceeecCCCc
Confidence 99999888775321 24567999999987 44444 37899999999999998885322 1 223333456
Q ss_pred EEEEEeCCCEEEEEeCCC
Q 005254 202 TLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 202 ~l~~~~~dg~i~~w~~~~ 219 (706)
.+++.+.||.+.+.++.+
T Consensus 191 ~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 191 TFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp EEEEEETTSCEEEEECCS
T ss_pred eeEEECCCCCEEEEECCC
Confidence 777888899888888765
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.71 E-value=4.6e-13 Score=127.90 Aligned_cols=115 Identities=15% Similarity=-0.011 Sum_probs=86.2
Q ss_pred EECCCCCEEEEecC--CC---cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe----------cCCeEEEE
Q 005254 109 ACHPSGGLLATAGA--DR---KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS----------DDATVRVW 173 (706)
Q Consensus 109 ~~s~~~~~l~~~~~--d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~i~vw 173 (706)
...|+++++.+... .. .|.++|..+++.+..+.....+ .++++||++. ++.+. .++.|.+|
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~--lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSE--FALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCE--EEEEeccccccccCCCCCeEEEE
Confidence 45578887777653 22 8899999999998887754444 9999999987 44443 46789999
Q ss_pred ECCCCeeEEEeecc-------cceEEEEEEecCCCEEEEEeC--CCEEEEEeCCCCcceee-ecC
Q 005254 174 DLLAKKCVATLDKH-------FSRVTSMAITSDGSTLISAGR--DKVVNLWDLRDYSCKLT-VPT 228 (706)
Q Consensus 174 d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~~w~~~~~~~~~~-~~~ 228 (706)
|..+.+.+..+... ......++|+|||++|+++.. ++.|.++| .+++.+.. ++.
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~ 166 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS 166 (373)
T ss_pred ECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC
Confidence 99998887766432 123457899999999999874 57899999 88876655 443
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.70 E-value=4.2e-13 Score=128.16 Aligned_cols=186 Identities=12% Similarity=0.031 Sum_probs=135.8
Q ss_pred EEcCCCCEEEEeeC--C----eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe----------ccCeEEEEEC
Q 005254 26 VVSSDGSFIACACG--E----SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----------HSREIRVWDL 89 (706)
Q Consensus 26 ~~s~dg~~l~~~~~--~----~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~----------~d~~i~iwd~ 89 (706)
...||++++++... . .|.++|..+++.+..+.....+ .+++||||++|+++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 44588888777653 2 7899999999998888765555 999999999999885 3678999999
Q ss_pred CCCeEEEEeecc-------CCCeEEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEE-eeCCCCcEEEEEEcCCCCce
Q 005254 90 STLKCLRSWKGH-------DGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHY-FKGHKGVVSSILFHPDTDKS 159 (706)
Q Consensus 90 ~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~ 159 (706)
.+++.+..+... ......++|+|||++|+++.. ++.|.++| .+++.+.. +.. .. ++.+.|+++.
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~- 178 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPS- 178 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCc-
Confidence 999888877532 123458999999999998864 47899999 99998877 542 22 2556677654
Q ss_pred EEEEEecCCeEEEEECCCCeeEEEee-----cccce-EEEEEEecCCCEEEEEeCCCEEEEEeCCCC
Q 005254 160 LLFSGSDDATVRVWDLLAKKCVATLD-----KHFSR-VTSMAITSDGSTLISAGRDKVVNLWDLRDY 220 (706)
Q Consensus 160 ~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 220 (706)
.+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+..+.+.+.|+...
T Consensus 179 ~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred eEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 3566778999999999 877663321 11112 233456777666555557888999988654
No 195
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.70 E-value=1.7e-14 Score=152.63 Aligned_cols=244 Identities=7% Similarity=0.000 Sum_probs=173.3
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCCC----cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCe-------
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT------- 465 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~------- 465 (706)
..+..+. ++|+++.++++.+.+| .|++||+.+++.+.....+ ..+..++|+|||+ .|+.++.++.
T Consensus 125 ~~~~~~~--~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 125 VALRGYA--FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGK-GMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp EEEEEEE--ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSS-EEEEEECCCCSSCCSSS
T ss_pred EEEEEEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCC-EEEEEEECCcccccccc
Confidence 3456666 8899998555544444 8999999999877643222 2367899999998 5555555544
Q ss_pred ---------EEEEEecCCCCCCCcccccceeEEEee--cCcceEEEEEcCCCCEEEEeeC-----CCcEEEEeCCC----
Q 005254 466 ---------IKVWSFDGLSDDAEQPMNLKAKAVVAA--HGKDINSLAVAPNDSLVCTGSQ-----DRTACVWRLPD---- 525 (706)
Q Consensus 466 ---------i~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~---- 525 (706)
|++|++.+... ........ +...+..+.++|||++|+..+. +..|++||+.+
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~--------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQS--------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGG--------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccCCCCEEEEEECCCCcc--------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999865421 01112222 3445788999999999988765 56899999976
Q ss_pred --cc-EEEEEeecCCcEEEEEEccCCCEEEEecCC----CcEEEEEcCCCc--eEEEEeeccc--CEEEEEEEeCCCEEE
Q 005254 526 --LV-SVVTFRGHKRGIWSVEFSPVDQVVITASGD----KTIKIWSISDGS--CLKTFEGHTS--SVLRASFLTRGAQIV 594 (706)
Q Consensus 526 --~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~--~~~~~~~~~~--~i~~~~~s~~~~~l~ 594 (706)
+. ....+..+...+.. .|+|+|+.|+..+.. +.|.+||+.++. ....+..|.. .+..+.|++++.+++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 43 35556666666655 588999888776553 369999998774 2344544544 677889987777888
Q ss_pred EEeCCC--CEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE-e---CCCcEEEEECCchh
Q 005254 595 SCGADG--LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG-G---SDALVNLWHDSTAA 653 (706)
Q Consensus 595 ~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~---~dg~i~vw~~~~~~ 653 (706)
+...|+ .|.+||+.+|+.+..+..+.+.+..+.++|++..++.. + ..+.+..||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 888888 46677887888888888888889999999999766532 2 35789999998765
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.70 E-value=5.2e-13 Score=125.38 Aligned_cols=279 Identities=7% Similarity=-0.048 Sum_probs=190.2
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEe-eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
...+.++++.+ ++.+.++...++.|..||.. +..... .......+.++. +.+++.. .++...++.|..|+.. +
T Consensus 14 ~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~--~~~~g~l-~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 14 DTGPYGITVSD-KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLT--ISSDGEV-WFTENAANKIGRITKK-G 87 (299)
T ss_dssp SCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEE--ECTTSCE-EEEETTTTEEEEECTT-S
T ss_pred CCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEE--ECCCCCE-EEeCCCCCeEEEECCC-C
Confidence 35667777765 55666655557899999988 443322 223445667776 6677664 5666667889999986 3
Q ss_pred eEEE-EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 432 CCVG-VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 432 ~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
+... ........+..+++.+++. ++++...++.|..|+. .+.. ...........+..+++.++|++++
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~---------~~~~~~~~~~~~~~i~~~~~g~l~v 156 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKI---------REYELPNKGSYPSFITLGSDNALWF 156 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCE---------EEEECSSTTCCEEEEEECTTSCEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCE---------EEecCCCCCCCCceEEEcCCCCEEE
Confidence 3222 2223456789999999876 6666667888999987 3210 1111122345688999999998888
Q ss_pred EeeCCCcEEEEeCCCccEEEE-EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE-EeecccCEEEEEEEe
Q 005254 511 TGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-FEGHTSSVLRASFLT 588 (706)
Q Consensus 511 ~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~ 588 (706)
+...++.|..||. +++.... ...+...+..++++++++++++...++.|.+||. +++.... ...+...+..+++++
T Consensus 157 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~ 234 (299)
T 2z2n_A 157 TENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA 234 (299)
T ss_dssp EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS
T ss_pred EeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC
Confidence 7777789999998 6655432 2334556889999999998777777889999998 6664332 222446788999999
Q ss_pred CCCEEEEEeCCCCEEEEECCCCeEEEE-eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 589 RGAQIVSCGADGLVKLWTVRTGECIAT-YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 589 ~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+|+.+++...++.|..||. +++.... +..+...+.++++ +++++.++.. .+.+..++..+..
T Consensus 235 ~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp TTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred CCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 9987776657789999998 5653322 3345567899999 8888777655 5667777776543
No 197
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.69 E-value=2.5e-14 Score=136.56 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=116.7
Q ss_pred ccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Q 005254 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF 140 (706)
Q Consensus 61 ~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 140 (706)
..|.+++|++++..++..+.++.++.| .++....+..+...+.+++|+|++++++++..++.|.+||.++++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 456788999998888877788899999 45667777777788899999999998888888899999999988866655
Q ss_pred eCCCCcEEEEEEcCCCCceEEEEEecC----CeEEEEECCCCeeEEEee--cccceEEEEEEecCCCEEEEEeC------
Q 005254 141 KGHKGVVSSILFHPDTDKSLLFSGSDD----ATVRVWDLLAKKCVATLD--KHFSRVTSMAITSDGSTLISAGR------ 208 (706)
Q Consensus 141 ~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------ 208 (706)
..+...+.+++++|+++. +++...+ +.|.+||..+++....+. .+...+..++++|+|+++++...
T Consensus 83 ~~~~~~~~~i~~~~dg~l--~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRL--FVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp ECSSSSEEEEEECTTSCE--EEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eCCCCCcceEEECCCCcE--EEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 456788999999998763 5555555 589999998777653332 23457899999999987666543
Q ss_pred CCEEEEEeCC
Q 005254 209 DKVVNLWDLR 218 (706)
Q Consensus 209 dg~i~~w~~~ 218 (706)
.+.|..++..
T Consensus 161 ~~~l~~~~~~ 170 (333)
T 2dg1_A 161 LGGVYYVSPD 170 (333)
T ss_dssp CEEEEEECTT
T ss_pred CceEEEEeCC
Confidence 2445555543
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.69 E-value=8e-15 Score=135.31 Aligned_cols=241 Identities=9% Similarity=-0.027 Sum_probs=170.1
Q ss_pred eEEEeeeeeecCCCEEEE-EeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCC
Q 005254 398 IVLCLDTCALSSGKILIV-TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 476 (706)
...++. +.+++.. ++ +...++.|..|+..+.............+.++++++++. ++++.. ++.|..|+......
T Consensus 25 ~p~~i~--~~~~g~l-~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVA--VDSAGNV-YVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEE--ECTTCCE-EEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCC
T ss_pred CccceE--ECCCCCE-EEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceE
Confidence 344554 6677764 55 557788999999876543332233445788899999987 555555 88999998765321
Q ss_pred CCCcccccceeEEEe-ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec
Q 005254 477 DAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 555 (706)
.... .....+..++++++|+++++...++.|.+|+..+.............+..++++++++++++..
T Consensus 100 -----------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 168 (270)
T 1rwi_B 100 -----------TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDT 168 (270)
T ss_dssp -----------EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEG
T ss_pred -----------eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEEC
Confidence 1111 2225678999999999887777788999998765544333233334678899999999877777
Q ss_pred CCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEE
Q 005254 556 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635 (706)
Q Consensus 556 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 635 (706)
.++.|.+||............+...+..++++++|..+++...++.|.+||............+...+.+++++++|+++
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 169 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEE
T ss_pred CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEE
Confidence 78899999987665544333333678899999999777777778899999987655433222344678999999999988
Q ss_pred EEEeCCCcEEEEECCchhH
Q 005254 636 ATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 636 ~~~~~dg~i~vw~~~~~~~ 654 (706)
++...++.|.++++...+.
T Consensus 249 v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 249 VADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEGGGTEEEEECCCGGGS
T ss_pred EEECCCCEEEEEcCCCccc
Confidence 8888999999999987654
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.68 E-value=5.8e-14 Score=132.71 Aligned_cols=196 Identities=11% Similarity=0.031 Sum_probs=139.9
Q ss_pred CeEEEEEccCCeEEEeec------CCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCC
Q 005254 40 ESINIVDLSNASIKSTIE------GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPS 113 (706)
Q Consensus 40 ~~i~i~d~~~~~~~~~l~------~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 113 (706)
+.|.++|..+++....+. ........+++. ++++.++...++.|.+||.++++.+.++. .......++++++
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~ 94 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSD 94 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEET
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCC
Confidence 489999999999876542 122346778874 34455555668899999999999999886 4577899999999
Q ss_pred CCEEEEecCCCcEEEEECCCCeEEEEeeCCC-----CcEEEEEEcCCCCceEEEEEe-cCCeEEEEECCCCeeEEEeecc
Q 005254 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHK-----GVVSSILFHPDTDKSLLFSGS-DDATVRVWDLLAKKCVATLDKH 187 (706)
Q Consensus 114 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~ 187 (706)
++..++...++.|.+||..+++....+.... .....+++ +++. ++++.. .++.|.++|+.+++.+..+...
T Consensus 95 g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~-lyv~~~~~~~~v~viD~~t~~~~~~i~~g 171 (328)
T 3dsm_A 95 EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKY-VYVNCWSYQNRILKIDTETDKVVDELTIG 171 (328)
T ss_dssp TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTE-EEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCE-EEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence 8544444478999999999999887766433 14566777 3344 334433 4889999999999988877543
Q ss_pred cceEEEEEEecCCCEEEEEeCC----------CEEEEEeCCCCcceeeecCc--ceeeeEEeeCCC
Q 005254 188 FSRVTSMAITSDGSTLISAGRD----------KVVNLWDLRDYSCKLTVPTY--EMVEAVCAIPPG 241 (706)
Q Consensus 188 ~~~v~~~~~~~~~~~l~~~~~d----------g~i~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~ 241 (706)
.....++++++|++++++..+ +.|.++|..+++....+... .....+++.+++
T Consensus 172 -~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~ 236 (328)
T 3dsm_A 172 -IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR 236 (328)
T ss_dssp -SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS
T ss_pred -CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC
Confidence 345688999999876666544 78999999988766555432 234445555444
No 200
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.67 E-value=1.4e-13 Score=129.28 Aligned_cols=172 Identities=14% Similarity=0.088 Sum_probs=140.5
Q ss_pred ccceEEcCCCCEEEEeeCCeEEEEEccCCe---------EEE-eecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC
Q 005254 22 GGPLVVSSDGSFIACACGESINIVDLSNAS---------IKS-TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST 91 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~---------~~~-~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~ 91 (706)
...+++++.+.++++++.+.+++|++++.+ ... ....+.. |++|+| |+++|+++ .++.|++||+.+
T Consensus 40 ~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s 115 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEE 115 (388)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSS
T ss_pred ccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchh
Confidence 347999999999999999999999976544 111 2223566 999999 99999999 889999999988
Q ss_pred CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
.........|..++.++.+.+.. +|+++.||.|.+||+.++.... +...|++++|+|+| ++.|..||.++
T Consensus 116 l~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG----~~vg~~dg~i~ 185 (388)
T 1xip_A 116 LSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ----LAVLLKDRSFQ 185 (388)
T ss_dssp TTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE----EEEEETTSCEE
T ss_pred hhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc----eEEEEcCCcEE
Confidence 77666777788889998887653 8888999999999999887643 45689999999976 67899999999
Q ss_pred EEECCCCee--EEEe------e---cccceEEEEEEecCCCEEEEEe
Q 005254 172 VWDLLAKKC--VATL------D---KHFSRVTSMAITSDGSTLISAG 207 (706)
Q Consensus 172 vwd~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~~~~ 207 (706)
+|+...+.. ...+ . +|...|.++.|.+++.++++-+
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999887775 5555 2 3678999999999998888643
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=6.6e-14 Score=127.74 Aligned_cols=192 Identities=14% Similarity=0.072 Sum_probs=156.0
Q ss_pred CCCCEEEEeeCC-eEEEEEccCCeEEEeecCCC-ccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC-CCe
Q 005254 29 SDGSFIACACGE-SINIVDLSNASIKSTIEGGS-DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-GPA 105 (706)
Q Consensus 29 ~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~-~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v 105 (706)
..+++|++++++ .|.+||.++|+.+..+..+. ..+.+++++|+|++++ +.++.|..||. +|+.+..+..+. ..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 345677777766 89999999999999888776 4789999999999988 34778999999 899999998753 578
Q ss_pred EEEEECCCCCEEEEecC-CCcEEEEECCCCeEEEEeeC------CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 106 IGMACHPSGGLLATAGA-DRKVLVWDVDGGFCTHYFKG------HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 106 ~~~~~s~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
.++.+.+||+++++.+. ++.|..+|. +|+.+..+.. +......+++.++++. +++...++.|..||.+ |
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~--lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNY--LVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCE--EEEETTTTEEEEECTT-S
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCE--EEEecCCCEEEEECCC-C
Confidence 89999999999999876 777888886 6777766542 2223455677887775 8888899999999987 9
Q ss_pred eeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 179 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 179 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
+.+..+..+ ....++.+.++|+.++++..++.|..+|..+++.+..+..
T Consensus 156 ~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 156 QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 998888654 4456678889999999998888999999999998887753
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=2.2e-12 Score=121.12 Aligned_cols=189 Identities=13% Similarity=0.141 Sum_probs=137.6
Q ss_pred cceEEcCCCCEEEEee-CCeEEEEEccCCeEEE-eecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEE-EEee
Q 005254 23 GPLVVSSDGSFIACAC-GESINIVDLSNASIKS-TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL-RSWK 99 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~-~~~i~i~d~~~~~~~~-~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~ 99 (706)
.+++++++|+++++.. ++.|.+||.. ++... .+..+...+.+++++++|.++++...++.|..||.. ++.. ..+.
T Consensus 18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~ 95 (299)
T 2z2n_A 18 YGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLP 95 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred cceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCC
Confidence 4699999999887766 3589999988 65443 223355789999999999988877768899999986 4322 2222
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY-FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
.....+..+++++++.++++...++.|.+||. +++.... ...+...+..+++.+++. ++++...++.|..||. ++
T Consensus 96 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g 171 (299)
T 2z2n_A 96 NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA--LWFTENQNNAIGRITE-SG 171 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TC
T ss_pred CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC--EEEEeCCCCEEEEEcC-CC
Confidence 34567899999999988888777889999998 5554332 233456789999999875 3555556788999998 66
Q ss_pred eeEEE-eecccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 179 KCVAT-LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 179 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
+.... +..+...+.++++.++|++.++...++.|..|+.
T Consensus 172 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 172 DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 65432 3334456888999999886666555777888876
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=4e-14 Score=130.61 Aligned_cols=237 Identities=9% Similarity=-0.005 Sum_probs=162.7
Q ss_pred ccceEEcCCCCEEE-Eee-CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee
Q 005254 22 GGPLVVSSDGSFIA-CAC-GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK 99 (706)
Q Consensus 22 ~~~~~~s~dg~~l~-~~~-~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 99 (706)
..+++++++|++++ +.. ++.|.+||..+.........+...+.+++++++|+++++.. ++.|.+||..+........
T Consensus 26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~ 104 (270)
T 1rwi_B 26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPF 104 (270)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCC
T ss_pred ccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeec
Confidence 34699999999766 423 45899999766554333233445678999999999666655 8899999987655432222
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 179 (706)
.....+..++++++|+++++...++.|.+|+..+.............+..+++.++++ ++++...++.|.+||.....
T Consensus 105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN--VYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC--EEEEEGGGTEEEEECTTTCC
T ss_pred CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC--EEEEECCCCEEEEEecCCCc
Confidence 2336789999999999877777788999998765544332223344678899999875 36666667899999987766
Q ss_pred eEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC-cceeeeEEeeCCCCCcccccccccchhhhc
Q 005254 180 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT-YEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 258 (706)
Q Consensus 180 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (706)
.......+...+.++++.++|.++++...++.|.+|+............ ...+..+++.+++.
T Consensus 183 ~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~---------------- 246 (270)
T 1rwi_B 183 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT---------------- 246 (270)
T ss_dssp EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC----------------
T ss_pred eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC----------------
Confidence 5443333446788999999997666666688999999876543322211 23456666666654
Q ss_pred cccccceEEEEecCCCeEEEEECCCC
Q 005254 259 KRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
.+++...++.|++++....
T Consensus 247 -------l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 247 -------VYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp -------EEEEEGGGTEEEEECCCGG
T ss_pred -------EEEEECCCCEEEEEcCCCc
Confidence 5677788899999987654
No 204
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.3e-09 Score=116.73 Aligned_cols=529 Identities=11% Similarity=0.067 Sum_probs=304.3
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec--------cCCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG--------HDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 131 (706)
...|.+|.-.++|. |-.|+.+| +..||-.+.+.... .. ....|.++...+++..|-+++.++-+..||.
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~f~~~~~-~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~ 94 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEG-LNKFDGTRFITYYK-EEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNY 94 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEECSSSEEEECC-CSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEEET
T ss_pred cCEeEEEEECCCCC-EEEccCCc-CccccCCceEEEEc-CCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceECC
Confidence 46899999999985 56677776 77788655333222 11 1245999999998873555666646999999
Q ss_pred CCCeEEEEeeC-------CCCcEEEEEEcC--CCCceEEEEEecCCeEEEEECCCCeeEEEee-----cccceEEEEEEe
Q 005254 132 DGGFCTHYFKG-------HKGVVSSILFHP--DTDKSLLFSGSDDATVRVWDLLAKKCVATLD-----KHFSRVTSMAIT 197 (706)
Q Consensus 132 ~~~~~~~~~~~-------~~~~v~~~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~ 197 (706)
.+++....... ....|.++.... ++. +..++.++.|..+|..+++...... .....|.++...
T Consensus 95 ~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d 171 (781)
T 3v9f_A 95 ETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEA 171 (781)
T ss_dssp TTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEE
T ss_pred CCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEEC
Confidence 88775443111 123688888766 443 5566645558899987766443211 112457888887
Q ss_pred cCCCEEEEEeCCCEEEEEeCCCCcceeeecC--------cceeeeEEeeCCCCCcccccccccchhhhccccccceEEEE
Q 005254 198 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPT--------YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 269 (706)
Q Consensus 198 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (706)
++|. |..++.++-|..|+..+.+....... ...+..+....++ .+..
T Consensus 172 ~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g------------------------~lwi 226 (781)
T 3v9f_A 172 EDGK-LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNG------------------------NIWI 226 (781)
T ss_dssp ETTE-EEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTC------------------------CEEE
T ss_pred CCCC-EEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCC------------------------CEEE
Confidence 7775 55566665688999877653321100 1123333332332 3444
Q ss_pred ecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEee--
Q 005254 270 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK-- 347 (706)
Q Consensus 270 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 347 (706)
+... -+..|+..++........... ........+.++...+ ...+.+++..+-+..++...............
T Consensus 227 gt~~-Gl~~~d~~~~~~~~~~~~~~~---~~~l~~~~i~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~ 301 (781)
T 3v9f_A 227 GTSK-GLALFNANTETFTNFHNNPGN---IHGALSSYIFSIKQLK-DNKLWIATELNGIMILDLQQNQFLLPEQIRFEFI 301 (781)
T ss_dssp EETT-EEEEEETTTTEEEC--------------CCCCEEEEEECT-TSEEEEEESSSCEEEEETTCC---------CEEE
T ss_pred EeCC-cHheECCCCCcEEEEEcCCCc---cccccCceEEEEEECC-CCCEEEEeCCCCeEEECCCCCeeeeeeccccccc
Confidence 4444 588888876644322111000 0011223455555444 44566677756677776544321111000000
Q ss_pred -E----ecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee---------CCcceEEEeeeeeecCCCEE
Q 005254 348 -R----LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA---------GHSEIVLCLDTCALSSGKIL 413 (706)
Q Consensus 348 -~----~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~ 413 (706)
. ..-....|.++... ....+-+++.++.|..++........... .....|.++. ...++.
T Consensus 302 ~~~~~~~~l~~~~v~~i~~D--~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~--~d~~g~-- 375 (781)
T 3v9f_A 302 REGDNNYSLSNASARYIFQD--SFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVC--DDGQGK-- 375 (781)
T ss_dssp CBCSSTTSBSSSCEEEEEEC--SSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEE--ECTTSC--
T ss_pred cCCCCCCCCCCCeEEEEEEe--CCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEE--EcCCCC--
Confidence 0 01123445555554 34457777877889999887654332211 1234566664 444444
Q ss_pred EEEeeCCCcEEEEeCCCceEEEEE---eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE
Q 005254 414 IVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 490 (706)
+-.|+.++-+..++..++...... ......|.++...+++. |..|+.++-+..++..... ....
T Consensus 376 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~-----------~~~~ 442 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN--LWFGTYLGNISYYNTRLKK-----------FQII 442 (781)
T ss_dssp EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC--EEEEETTEEEEEECSSSCE-----------EEEC
T ss_pred EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC--EEEEeccCCEEEEcCCCCc-----------EEEe
Confidence 556676677889998765433211 22346788888887776 5556666668888765431 1111
Q ss_pred ---eecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeec-----CCcEEEEEEccCCCEEEEecCCCcEEE
Q 005254 491 ---AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH-----KRGIWSVEFSPVDQVVITASGDKTIKI 562 (706)
Q Consensus 491 ---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~i 562 (706)
......|.++...++|.+.+ |+. +-+..||..+++........ ...|.++...++|.+.+.....| +..
T Consensus 443 ~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~ 519 (781)
T 3v9f_A 443 ELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGI 519 (781)
T ss_dssp CSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEE
T ss_pred ccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEE
Confidence 11345688898888886544 555 45889998776543332222 36789999999888665543355 888
Q ss_pred EEcCCCceEEEEee----cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc----CCCcEEEEEEcCCCCE
Q 005254 563 WSISDGSCLKTFEG----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----HEDKIWALAVGKKTEM 634 (706)
Q Consensus 563 wd~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~ 634 (706)
||..+++. ..+.. ....|.++...++|+..++ +.+|.+..||..+++.. .+.. ....|.++...++|++
T Consensus 520 ~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~l 596 (781)
T 3v9f_A 520 YTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNI 596 (781)
T ss_dssp ECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCE
T ss_pred EeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCE
Confidence 98766543 33321 2346888888888876554 44675588998776532 3321 2346788988888876
Q ss_pred EEEEeCCCcEEEEECCc
Q 005254 635 FATGGSDALVNLWHDST 651 (706)
Q Consensus 635 l~~~~~dg~i~vw~~~~ 651 (706)
.++ +.+| |..++..+
T Consensus 597 W~~-t~~G-l~~~~~~~ 611 (781)
T 3v9f_A 597 WAS-TNTG-ISCYITSK 611 (781)
T ss_dssp EEE-CSSC-EEEEETTT
T ss_pred EEE-cCCc-eEEEECCC
Confidence 554 4455 66677654
No 205
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.64 E-value=4.8e-09 Score=106.97 Aligned_cols=519 Identities=12% Similarity=0.054 Sum_probs=292.2
Q ss_pred CCEEEEeeCCeEEEEEccCCeEEEeec-CCCccEEEEEEccCCCEEEEEe-ccCeEEEEECCCCeEEEEeeccCCCeEEE
Q 005254 31 GSFIACACGESINIVDLSNASIKSTIE-GGSDTITALALSPDDKLLFSSG-HSREIRVWDLSTLKCLRSWKGHDGPAIGM 108 (706)
Q Consensus 31 g~~l~~~~~~~i~i~d~~~~~~~~~l~-~~~~~i~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 108 (706)
..+|+++....|+..++.+......+. ..-....+|+|++.+..|..+. .++.|..+++........+.........+
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 347888888899999998765433332 2235678999999777776554 57889999987654444444333457789
Q ss_pred EECCCCCEEEEe-cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe--cCCeEEEEECCCCeeEEEee
Q 005254 109 ACHPSGGLLATA-GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS--DDATVRVWDLLAKKCVATLD 185 (706)
Q Consensus 109 ~~s~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~ 185 (706)
++.+.+..|..+ ...+.|.+.+++.......+...-.....+++.|.... |+... ..+.|...++.........
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~--lY~tD~g~~~~I~r~~~dG~~~~~l~- 162 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGF--MYWTEWGGKPKIDRAAMDGSERTTLV- 162 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTE--EEEEECSSSCEEEEEETTSCSCEEEE-
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCe--EEEeCCCCCCEEEEEeCCCCceEEEE-
Confidence 999876666554 45678999998765433333344566799999986554 33333 3567888887544433323
Q ss_pred cccceEEEEEEecCCCEEEEEe-CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccc
Q 005254 186 KHFSRVTSMAITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264 (706)
Q Consensus 186 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
........++++++++.|+.+. ..+.|...+++................++... .
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~------------------------~ 218 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ------------------------D 218 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET------------------------T
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC------------------------C
Confidence 3446788999999877777765 46789999987543311111111222333322 1
Q ss_pred eEEEEecCCCeEEEEECCCCeE---EeeccC-c--ccccccc--------CCCccceeEEEEccCCCeeEEEeeCCceEE
Q 005254 265 IHFITVGERGIVRMWNADSACL---YEQKSS-D--VTISFEM--------DDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~---~~~~~~-~--~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (706)
..+++-...+.|...|..++.. +..... . ....... .....+...++....+....|.+..|....
T Consensus 219 ~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~ 298 (628)
T 4a0p_A 219 YIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLN 298 (628)
T ss_dssp EEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEEC
T ss_pred EEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEec
Confidence 2445555567777777655421 111000 0 0000000 000111122222211112222222221110
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCcee-eEeee-CCcceEEEeeeeeec
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLA-GHSEIVLCLDTCALS 408 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~-~~~~~-~~~~~i~~~~~~~~~ 408 (706)
. ....+ .+ ...+++.+.. ..|+-..+..... ...+. ..-..+..++ +.+
T Consensus 299 ~----------------------d~~~C---~~-~~~~Ll~s~~-~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld--~d~ 349 (628)
T 4a0p_A 299 A----------------------DNRTC---SA-PTTFLLFSQK-SAINRMVIDEQQSPDIILPIHSLRNVRAID--YDP 349 (628)
T ss_dssp T----------------------TSSCE---EC-CSSEEEEEET-TEEEEECCCTTCCCCEECCCTTCSCEEEEE--EET
T ss_pred c----------------------cCCcC---cc-ccceeeeecc-ceEEEEecccccCceEEEEehhcCCceEEE--Eec
Confidence 0 00001 11 2334444443 5566665543321 11122 1224466677 888
Q ss_pred CCCEEEEEeeCCCcEEEEeCCCceEEEEEeC------CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccc
Q 005254 409 SGKILIVTGSKDNSVRLWDSESRCCVGVGTG------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482 (706)
Q Consensus 409 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 482 (706)
.++.++.+-...+.|..++.........+.. ....+..+++...++++..+-+..+.|.+.+++...
T Consensus 350 ~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~------- 422 (628)
T 4a0p_A 350 LDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRS------- 422 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCE-------
T ss_pred CCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCe-------
Confidence 8888666666678888888765433333322 234688999999888777888888999999886431
Q ss_pred ccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCC--cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec-CCC
Q 005254 483 NLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDK 558 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg 558 (706)
........-.....+++.| .|.++.+-.... .|...++............-.....|+++++++.|+.+. ..+
T Consensus 423 ---~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~ 499 (628)
T 4a0p_A 423 ---VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLR 499 (628)
T ss_dssp ---EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred ---EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCC
Confidence 1122233445689999999 555555543332 566666653333333333345678999999877776664 457
Q ss_pred cEEEEEcCCCceEEEEe-ecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec
Q 005254 559 TIKIWSISDGSCLKTFE-GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617 (706)
Q Consensus 559 ~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (706)
.|...++. |...+.+. ........++... +....+=...+.|...|..+|+....+.
T Consensus 500 ~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 500 RIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp EEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred EEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 89999985 44444443 2334456676644 3333443345678888877776444443
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.64 E-value=2e-13 Score=145.01 Aligned_cols=186 Identities=16% Similarity=0.056 Sum_probs=121.1
Q ss_pred cCCCCEEEEeeCC------eEEEEEcc---CCeEEEee------cCCCccEEEEEEccCCCEEEEEecc-----CeEEEE
Q 005254 28 SSDGSFIACACGE------SINIVDLS---NASIKSTI------EGGSDTITALALSPDDKLLFSSGHS-----REIRVW 87 (706)
Q Consensus 28 s~dg~~l~~~~~~------~i~i~d~~---~~~~~~~l------~~~~~~i~~l~~s~~~~~l~s~~~d-----~~i~iw 87 (706)
+|||+++++.... .|.+.+.. +++....+ .+|...+..++|||||++||.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 4999999987642 34555554 44433322 2344578999999999999987553 469999
Q ss_pred ECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCc--------------EEEEECCCCe----EEEEeeCCCCcEEE
Q 005254 88 DLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRK--------------VLVWDVDGGF----CTHYFKGHKGVVSS 149 (706)
Q Consensus 88 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------i~vw~~~~~~----~~~~~~~~~~~v~~ 149 (706)
|+.+++.+.... +...+..++|+|| +.|+.++.++. |++|++.++. .+.....+...+..
T Consensus 195 dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 195 GVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp ETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred ECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 999998765421 2222457899999 99998876543 8999998765 23322334446899
Q ss_pred EEEcCCCCceEEEEEec-----CCeEEEEECCCC--eeEEEeecccceEEEEEEecCCCEEEEEeCC----CEEEEEeCC
Q 005254 150 ILFHPDTDKSLLFSGSD-----DATVRVWDLLAK--KCVATLDKHFSRVTSMAITSDGSTLISAGRD----KVVNLWDLR 218 (706)
Q Consensus 150 ~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~w~~~ 218 (706)
+.|+|||+. ++..+. ...|++||+.++ +....+..+...+... ++|+|+.|+..+.+ +.|.+|++.
T Consensus 273 ~~~SpDG~~--l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~ 349 (741)
T 1yr2_A 273 ASVSSDGRW--VVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLS 349 (741)
T ss_dssp EEECTTSCE--EEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred EEECCCCCE--EEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence 999999887 554443 348999999876 3134454444444444 34788877777643 335555543
No 207
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.63 E-value=2.2e-14 Score=151.24 Aligned_cols=262 Identities=8% Similarity=-0.064 Sum_probs=172.3
Q ss_pred EEEEeCCCceeeEeee------CCcceEEEeeeeeecCCCEEEEEee----CCCcEEEEeCCCceEEEEEeCCCcCe--E
Q 005254 378 VQVYDLSSMSCSYVLA------GHSEIVLCLDTCALSSGKILIVTGS----KDNSVRLWDSESRCCVGVGTGHMGAV--G 445 (706)
Q Consensus 378 i~~~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~v--~ 445 (706)
+...+...+.....+. +|...+..+. ++|+++.++++.+ .+..|++||+.+++.+. ..+...+ .
T Consensus 96 l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~--~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~ 171 (695)
T 2bkl_A 96 LYWRQGESGQEKVLLDPNGWSKDGTVSLGTWA--VSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYA 171 (695)
T ss_dssp EEEEESTTSCCEEEECGGGSSSSSCEEEEEEE--ECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTC
T ss_pred EEEEcCCCCCcEEEEchHHhccCCCEEEEEEE--ECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCccccc
Confidence 4455544444333332 3444566776 8899998554443 34579999999987641 1122222 6
Q ss_pred EEEEecCCCeEEEEecCCCe-------------EEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe
Q 005254 446 AVAFSKKLQNFLVSGSSDHT-------------IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~-------------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (706)
.++|+|+|+ .|+.++.+.. |++|++.+..... ........+...+..+.++|||++|+..
T Consensus 172 ~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~------~lv~~~~~~~~~~~~~~~SpDG~~l~~~ 244 (695)
T 2bkl_A 172 TPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD------TVVHERTGDPTTFLQSDLSRDGKYLFVY 244 (695)
T ss_dssp CCEECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC------EEEECCCCCTTCEEEEEECTTSCCEEEE
T ss_pred ceEEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc------eEEEecCCCCEEEEEEEECCCCCEEEEE
Confidence 899999998 5666666554 9999987642100 0111112244568899999999999988
Q ss_pred eCCC----cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec---CCCcEEEEEcCCCce--EEEEeec--ccCE
Q 005254 513 SQDR----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISDGSC--LKTFEGH--TSSV 581 (706)
Q Consensus 513 ~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~--~~~i 581 (706)
+.++ .|++++..+++. ..+..+...+....+ +++.+++... .++.|.+||+.+++. ...+..+ ...+
T Consensus 245 ~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l 322 (695)
T 2bkl_A 245 ILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL 322 (695)
T ss_dssp EEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred EeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence 7666 678887665543 444555666666666 5666444443 257899999987753 2333333 4457
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECC-CCeEEEEeccC-CCcEEEEEEcCCCCEEEE----EeCCCcEEEEECCchh
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVR-TGECIATYDKH-EDKIWALAVGKKTEMFAT----GGSDALVNLWHDSTAA 653 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~----~~~dg~i~vw~~~~~~ 653 (706)
..++|+ ++.++++...|+..++|.+. +++....+..+ .+.+..+.++|+++.++. ....+.|++||+.+++
T Consensus 323 ~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 323 LSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 788888 67788888999988887654 46666667655 677888999999987763 2335789999998765
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.63 E-value=4.1e-13 Score=128.23 Aligned_cols=114 Identities=16% Similarity=0.031 Sum_probs=87.1
Q ss_pred CCCCEEEEecCC-----CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE--------ecCCeEEEEECCCC
Q 005254 112 PSGGLLATAGAD-----RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG--------SDDATVRVWDLLAK 178 (706)
Q Consensus 112 ~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~--------~~dg~i~vwd~~~~ 178 (706)
++++++++.... +.|.++|..+++.+..+..-..+ .++++||++..++... ..++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 577777666542 68999999999999998865555 8999999988444332 14678999999999
Q ss_pred eeEEEeecc-------cceEEEEEEecCCCEEEEEeC--CCEEEEEeCCCCcceeeec
Q 005254 179 KCVATLDKH-------FSRVTSMAITSDGSTLISAGR--DKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 179 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~~w~~~~~~~~~~~~ 227 (706)
+.+..+.-. ......+.|+|||++|+++.. ++.|.+.|+.+.+.+..++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 988877532 123457899999999999874 5789999998887666554
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.63 E-value=4.4e-13 Score=127.99 Aligned_cols=185 Identities=14% Similarity=0.067 Sum_probs=138.0
Q ss_pred CCCCEEEEeeC------CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe----------ccCeEEEEECCCC
Q 005254 29 SDGSFIACACG------ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----------HSREIRVWDLSTL 92 (706)
Q Consensus 29 ~dg~~l~~~~~------~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~----------~d~~i~iwd~~~~ 92 (706)
+|++.+++... +.|.++|..+++.+..+.....+ .+++||||++|+++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 57777777765 58999999999999988866666 899999999988775 3678999999999
Q ss_pred eEEEEeecc-------CCCeEEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEE
Q 005254 93 KCLRSWKGH-------DGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS 163 (706)
Q Consensus 93 ~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 163 (706)
+.+.++.-. ......++|+|||++|+++.. ++.|.+.|..+++.+..+..... ....|++.. .+++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~-~~v~ 234 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPT-VFYM 234 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETT-EEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCc-EEEE
Confidence 998887632 233457899999999999863 57899999999999888774221 334555543 3566
Q ss_pred EecCCeEEEEECCCCeeEEEe----ecccce-EEEEEEecCCCEEEEEeCCCEEEEEeCCCC
Q 005254 164 GSDDATVRVWDLLAKKCVATL----DKHFSR-VTSMAITSDGSTLISAGRDKVVNLWDLRDY 220 (706)
Q Consensus 164 ~~~dg~i~vwd~~~~~~~~~~----~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 220 (706)
.+.||.+.+.+..+++..... .....+ ...+.|.+++..++.....+.+.+.|....
T Consensus 235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~ 296 (426)
T 3c75_H 235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE 296 (426)
T ss_dssp EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence 777888888888666554321 111111 123567899888888888899999998654
No 210
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.61 E-value=1e-08 Score=104.47 Aligned_cols=515 Identities=12% Similarity=0.085 Sum_probs=281.5
Q ss_pred CCEEEEeeCCeEEEEEccCCe-EEEeecCCCccEEEEEEccCCCEEEEEec-cCeEEEEECCCCeE-EEEeeccCCCeEE
Q 005254 31 GSFIACACGESINIVDLSNAS-IKSTIEGGSDTITALALSPDDKLLFSSGH-SREIRVWDLSTLKC-LRSWKGHDGPAIG 107 (706)
Q Consensus 31 g~~l~~~~~~~i~i~d~~~~~-~~~~l~~~~~~i~~l~~s~~~~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~~~~~v~~ 107 (706)
..+|..+..+.|+..|+.... ....+...-....+|+|++.+..|..+.. .+.|..+++..... ...+...-.....
T Consensus 9 ~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~G 88 (619)
T 3s94_A 9 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 88 (619)
T ss_dssp -CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEE
T ss_pred CceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCe
Confidence 346778888899999987653 22222233456789999998777776654 67899999876532 2233333357889
Q ss_pred EEECCCCCEEEEe-cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe--cCCeEEEEECCCCeeEEEe
Q 005254 108 MACHPSGGLLATA-GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS--DDATVRVWDLLAKKCVATL 184 (706)
Q Consensus 108 ~~~s~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~ 184 (706)
+++.+.+..|+.+ ...+.|.+.+++.......+...-.....|++.|.+.. |+... ..+.|...++.........
T Consensus 89 lAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~--ly~tD~g~~~~I~r~~~dG~~~~~l~ 166 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGF--MYWTDWGEVPKIERAGMDGSSRFIII 166 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTE--EEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred EEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCe--EEEeccCCCCEEEEEECCCCceEEEE
Confidence 9999966655554 46788999999865433333344556789999987554 33333 3467777777543333333
Q ss_pred ecccceEEEEEEecCCCEEEEEe-CCCEEEEEeCCCCcceeeec-CcceeeeEEeeCCCCCcccccccccchhhhccccc
Q 005254 185 DKHFSRVTSMAITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVP-TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS 262 (706)
Q Consensus 185 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (706)
...-.....+++++++..|+.+. ..+.|...+++......... .......+++..
T Consensus 167 ~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~----------------------- 223 (619)
T 3s94_A 167 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE----------------------- 223 (619)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESS-----------------------
T ss_pred eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeC-----------------------
Confidence 33445678999999877777665 45678888876533222111 001111222211
Q ss_pred cceEEEEecCCCeEEEEECCCCeEEeeccCcc------ccccccCC---------CccceeEEEE-ccCCCeeEEEeeCC
Q 005254 263 LEIHFITVGERGIVRMWNADSACLYEQKSSDV------TISFEMDD---------SKRGFTAATV-LPSNQGLLCVTADQ 326 (706)
Q Consensus 263 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~---------~~~~~~~~~~-~~~~~~l~~~~~~~ 326 (706)
+..+++-...+.|...|..++.......... .......+ ...+...+++ .|......|.+..|
T Consensus 224 -~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g 302 (619)
T 3s94_A 224 -DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTG 302 (619)
T ss_dssp -SEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTT
T ss_pred -CEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCch
Confidence 1245555566777777776653221111100 00000000 0111122222 12222233333333
Q ss_pred ceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeE-eee-CCcceEEEeee
Q 005254 327 QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-VLA-GHSEIVLCLDT 404 (706)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~-~~~-~~~~~i~~~~~ 404 (706)
....- .... +......+|+.+. .+.|+..++....... .+. ..-..+.+++
T Consensus 303 ~~l~~----------------------d~~~---C~~~~~~~Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld- 355 (619)
T 3s94_A 303 VKLLE----------------------NGKT---CKDGATELLLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAID- 355 (619)
T ss_dssp CCBCT----------------------TSSC---BCSSCSEEEEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEE-
T ss_pred heecc----------------------cCcc---cCCCCceEEEEEc-ccceEEEecCCCccceeEEeccccCccEEEE-
Confidence 21100 0000 0111234455444 3677777876553221 111 1223455666
Q ss_pred eeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccc
Q 005254 405 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 405 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 484 (706)
+.+.++.++++-...+.|+.++...................+++.+.++++.++-...+.|.+.++....
T Consensus 356 -~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~--------- 425 (619)
T 3s94_A 356 -YDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM--------- 425 (619)
T ss_dssp -EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---------
T ss_pred -EEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe---------
Confidence 7887777566666678899998876544444444446778999998767677777788999999887542
Q ss_pred ceeEEEeecCcceEEEEEcCCCCEEEEeeC--CCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEE
Q 005254 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQ--DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIK 561 (706)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~ 561 (706)
........-.....+++.|....|..... .+.|...++............-.....|++++++..|+.+. ..+.|.
T Consensus 426 -~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~ 504 (619)
T 3s94_A 426 -RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIE 504 (619)
T ss_dssp -CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred -EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEE
Confidence 11222223456789999997445544432 35677666653333323333445678999998777776664 456799
Q ss_pred EEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEe-CCCCEEEEECCCCe
Q 005254 562 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG-ADGLVKLWTVRTGE 611 (706)
Q Consensus 562 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 611 (706)
..++........+.........++...+ +|.... ..+.|...|..+|.
T Consensus 505 ~~~~dG~~~~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 505 VMNTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEESSSCCCEEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred EEecCCCceEEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence 9998543332222222222334555433 554443 45677777877774
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.59 E-value=1.3e-12 Score=123.57 Aligned_cols=240 Identities=11% Similarity=0.003 Sum_probs=163.3
Q ss_pred EEEeeeeeecCCCEEEEE-------eeCCCcEEEEeCCCceEEEEEe----CCCcCeEEEEEecC-CCeEEEEecCCCeE
Q 005254 399 VLCLDTCALSSGKILIVT-------GSKDNSVRLWDSESRCCVGVGT----GHMGAVGAVAFSKK-LQNFLVSGSSDHTI 466 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~~l~~~~~d~~i 466 (706)
..++. +.+++.. +++ +..++.|..||..+++...... .+...+.+++++++ +. ++++.. .+.|
T Consensus 20 ~~~~~--~~~~g~l-~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~-~~~l 94 (314)
T 1pjx_A 20 AEGPV--FDKNGDF-YIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADM-RLGL 94 (314)
T ss_dssp CEEEE--ECTTSCE-EEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEET-TTEE
T ss_pred ccCce--ECCCCCE-EEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEEC-CCCE
Confidence 34554 6666654 555 5678899999988877644322 24467889999998 65 444443 4478
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC---------------CcEEEEeCCCccEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD---------------RTACVWRLPDLVSVVT 531 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~ 531 (706)
.+|+.. +...... .... .......+.+++++++|+++++...+ +.|..|+.. ++...
T Consensus 95 ~~~d~~-g~~~~~~-~~~~----~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~- 166 (314)
T 1pjx_A 95 LVVQTD-GTFEEIA-KKDS----EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ- 166 (314)
T ss_dssp EEEETT-SCEEECC-SBCT----TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-
T ss_pred EEEeCC-CCEEEEE-eccC----CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-
Confidence 888876 3210000 0000 00122457899999999888776654 567777765 54433
Q ss_pred EeecCCcEEEEEEc----cCCCEEEEe-cCCCcEEEEEcC-CCce-----EEEEeecc-cCEEEEEEEeCCCEEEEEeCC
Q 005254 532 FRGHKRGIWSVEFS----PVDQVVITA-SGDKTIKIWSIS-DGSC-----LKTFEGHT-SSVLRASFLTRGAQIVSCGAD 599 (706)
Q Consensus 532 ~~~~~~~v~~~~~s----~~~~~l~~~-~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~i~~~~~s~~~~~l~~~~~d 599 (706)
+..+......++|+ |+++.|+.+ ..++.|.+||+. +++. ...+..+. ..+..++++++|+++++...+
T Consensus 167 ~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 167 VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 33344557889999 999765554 567899999986 4442 22233333 557889999999988888788
Q ss_pred CCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEECCc
Q 005254 600 GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF-ATGGSDALVNLWHDST 651 (706)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vw~~~~ 651 (706)
+.|.+||..+++.+..+..+...+.+++|+++++.| ++...++.|..|++..
T Consensus 247 ~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999998888777777777889999999999955 4555668899999864
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.59 E-value=6.7e-12 Score=116.86 Aligned_cols=220 Identities=15% Similarity=0.109 Sum_probs=154.0
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
+.++++.++++...++.|..||..+++... +. ....+.+++++++++ ++++. ++.|.+||...+.
T Consensus 20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~---------- 84 (297)
T 3g4e_A 20 WEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VT-MDAPVSSVALRQSGG-YVATI--GTKFCALNWKEQS---------- 84 (297)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEE-EE-CSSCEEEEEEBTTSS-EEEEE--TTEEEEEETTTTE----------
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCcEEE-Ee-CCCceEEEEECCCCC-EEEEE--CCeEEEEECCCCc----------
Confidence 677778878888888999999998876532 22 346799999999988 44443 5678899876542
Q ss_pred eeEEEee----cCcceEEEEEcCCCCEEEEeeCC---------CcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEE
Q 005254 486 AKAVVAA----HGKDINSLAVAPNDSLVCTGSQD---------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 486 ~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 552 (706)
....... ....+..++++|+|+++++...+ ..-.+|.+........+..+......++|+|+++.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEE
Confidence 1111111 12347889999999977654322 2334555443222333334445678999999998765
Q ss_pred -EecCCCcEEEEEc--CCCceE-----EEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEE
Q 005254 553 -TASGDKTIKIWSI--SDGSCL-----KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW 624 (706)
Q Consensus 553 -~~~~dg~i~iwd~--~~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 624 (706)
+.+.++.|.+|++ .++... ..+..+...+..+++.++|++.++...++.|..||..+|+.+..+..+...++
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t 244 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT 244 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence 4556788999997 455432 22222345678899999998888887888999999999999999988878899
Q ss_pred EEEEc-CCCCEEEEEeC
Q 005254 625 ALAVG-KKTEMFATGGS 640 (706)
Q Consensus 625 ~~~~s-~~~~~l~~~~~ 640 (706)
+++|+ ||++.|..++.
T Consensus 245 ~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEESGGGCEEEEEEB
T ss_pred EEEEeCCCCCEEEEEcC
Confidence 99998 88876655443
No 213
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.59 E-value=2.6e-11 Score=113.78 Aligned_cols=274 Identities=8% Similarity=-0.038 Sum_probs=185.7
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeE-eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
...+.++++.+ ++.+.++...++.|..||.. ++... .+......+..+. ..+++.. .++...++.|..+|.. +
T Consensus 19 ~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~--~~~~g~l-~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 19 DSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLI--VSSLGDI-WFTENGANKIGKLSKK-G 92 (300)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE--ECTTSCE-EEEETTTTEEEEECTT-S
T ss_pred CCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEE--ECCCCCE-EEEecCCCeEEEECCC-C
Confidence 34566677665 56666666677899999988 44433 2223335566665 6666664 5555567889999988 5
Q ss_pred eEEEE-EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeE-EEeecCcceEEEEEcCCCCEE
Q 005254 432 CCVGV-GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA-VVAAHGKDINSLAVAPNDSLV 509 (706)
Q Consensus 432 ~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l 509 (706)
+.... .......+..+++.+++. +.++...++.|..++.. +. ... ........+..+++.++|++.
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~----------~~~~~~~~~~~~~~~i~~d~~g~l~ 160 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GT----------IYEYDLPNKGSYPAFITLGSDNALW 160 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SC----------EEEEECSSTTCCEEEEEECTTSSEE
T ss_pred CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CC----------EEEccCCCCCCCceeEEECCCCCEE
Confidence 54322 222446789999999886 66666667888888865 21 111 112234568899999999977
Q ss_pred EEeeCCCcEEEEeCCCccEEEE-EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE-EeecccCEEEEEEE
Q 005254 510 CTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-FEGHTSSVLRASFL 587 (706)
Q Consensus 510 ~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s 587 (706)
++...++.|..+|. +++.... ...+...+..+++++++++.++....+.|.+||. +++.... +..+...+..+++.
T Consensus 161 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d 238 (300)
T 2qc5_A 161 FTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAG 238 (300)
T ss_dssp EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred EEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC
Confidence 76666788999998 5544432 2234456899999999988777777778999998 5554332 22345678899999
Q ss_pred eCCCEEEEEeCCCCEEEEECCCCeEEE-EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 588 TRGAQIVSCGADGLVKLWTVRTGECIA-TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 588 ~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
++|+..++...++.|..||. +++... .+......+.++.++++|++.++.. . .|..++.
T Consensus 239 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 239 KNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp STTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 99987776666789999998 555432 2333456688999999998666554 4 6666654
No 214
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.56 E-value=1.6e-12 Score=137.94 Aligned_cols=241 Identities=14% Similarity=0.061 Sum_probs=160.9
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCC----cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC---------
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH--------- 464 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--------- 464 (706)
.+..+. ++|+++.++++...+| .|++||+.+++.+... .+...+..++|+|+ + .|+.++.++
T Consensus 164 ~~~~~~--~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 164 ALDAWA--ASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEE--ECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-S-EEEEEECCCC--------
T ss_pred EEEeEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-C-EEEEEEecCccccccccc
Confidence 455666 8899998555554444 5999999999876542 12222357899999 7 454444443
Q ss_pred -----eEEEEEecCCCCCCCcccccceeEEEee--cCcceEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCc--cEEE
Q 005254 465 -----TIKVWSFDGLSDDAEQPMNLKAKAVVAA--HGKDINSLAVAPNDSLVCTGSQDR-----TACVWRLPDL--VSVV 530 (706)
Q Consensus 465 -----~i~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~ 530 (706)
.|++|++.+... ........ +...+..+.++|||++|+..+.++ .|++||+.++ +...
T Consensus 239 ~~~~~~v~~~~lgt~~~--------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQS--------ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp CCCCCEEEEEETTSCGG--------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred CCCCCEEEEEECCCCch--------hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 378888754321 01112222 223478999999999998877544 7999999876 3144
Q ss_pred EEeecCCcEEEEEEccCCCEEEEecCC----CcEEEEEcCCC--ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEE
Q 005254 531 TFRGHKRGIWSVEFSPVDQVVITASGD----KTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 604 (706)
Q Consensus 531 ~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 604 (706)
.+..+...+.... +|+++.|+..+.+ +.|.+||+.++ +....+..+...+..+.++ ++.++++...|+..++
T Consensus 311 ~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 311 ALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 5555555555553 4889988877653 45999999874 3344444444556677777 5667788888987777
Q ss_pred EECC-CCeEEEEecc-CCCcEEEEEEcCCCCEEEE----EeCCCcEEEEECCchh
Q 005254 605 WTVR-TGECIATYDK-HEDKIWALAVGKKTEMFAT----GGSDALVNLWHDSTAA 653 (706)
Q Consensus 605 wd~~-~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~----~~~dg~i~vw~~~~~~ 653 (706)
|.+. +++....+.. +.+.+..+.++|+++.|+. ....+.|.+||+.+++
T Consensus 389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 6544 5666666764 3677899999999886662 2345889999998765
No 215
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.56 E-value=7.8e-11 Score=110.50 Aligned_cols=189 Identities=14% Similarity=0.113 Sum_probs=136.3
Q ss_pred cceEEcCCCCEEEEeeC-CeEEEEEccCCeEEE-eecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEE-Eee
Q 005254 23 GPLVVSSDGSFIACACG-ESINIVDLSNASIKS-TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR-SWK 99 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~-~~i~i~d~~~~~~~~-~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~ 99 (706)
.+++++++|++.++... +.|.+||.. ++... .+..+...+.+++++++|++.++...++.|..||.. ++... .+.
T Consensus 23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~ 100 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLP 100 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred ceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCC
Confidence 36999999998777654 589999987 65543 233344678999999999987777667899999988 55432 222
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE-EeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH-YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
.....+..+++++++++.++...++.|..+|.+ ++... .+......+..+++.++++ +.++...++.|..+|. ++
T Consensus 101 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~i~~~~~-~g 176 (300)
T 2qc5_A 101 QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA--LWFTENQNNSIGRITN-TG 176 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS--EEEEETTTTEEEEECT-TC
T ss_pred CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC--EEEEecCCCeEEEECC-CC
Confidence 244678999999999988877767889999988 65443 2333456789999999876 3555555788999998 55
Q ss_pred eeEEE-eecccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 179 KCVAT-LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 179 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
+.... ...+...+..+++.++|.+.++....+.|.+|+.
T Consensus 177 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 177 KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 54432 2234456888999998876665555667777775
No 216
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.56 E-value=1.4e-13 Score=129.40 Aligned_cols=181 Identities=11% Similarity=0.115 Sum_probs=139.9
Q ss_pred cCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC-cccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEE
Q 005254 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE-QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 520 (706)
.++..+++++... ++++|+.++ +.+|++........ ........ ....+.. |+.++| |+++|+++ .++.|++
T Consensus 38 ~~~nlLais~~~g-ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 38 ASLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYS 110 (388)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred ccccEEEEcCCCC-EEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence 3688899999977 788888774 66698764320000 00001111 2223556 999999 99999999 8899999
Q ss_pred EeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC
Q 005254 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 600 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 600 (706)
||+.+.........|..++.++.+.+. .++++..||.|.+||+.++.... +...|++++|||+| ++.|..||
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg 182 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDR 182 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTS
T ss_pred EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCC
Confidence 999888777777788888988887764 38888999999999999887643 45689999999999 78899999
Q ss_pred CEEEEECCCCeE--EEEe------c---cCCCcEEEEEEcCCCCEEEE
Q 005254 601 LVKLWTVRTGEC--IATY------D---KHEDKIWALAVGKKTEMFAT 637 (706)
Q Consensus 601 ~i~iwd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~ 637 (706)
.+++|+...++. ...+ . +|...|.++.|.+++.++++
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999999988875 5666 2 37889999999999999886
No 217
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.55 E-value=1.4e-11 Score=116.33 Aligned_cols=234 Identities=14% Similarity=0.111 Sum_probs=161.4
Q ss_pred cceEEcCCCCEEEE--------eeCCeEEEEEccCCeEEEeec----CCCccEEEEEEccC-CCEEEEEeccCeEEEEEC
Q 005254 23 GPLVVSSDGSFIAC--------ACGESINIVDLSNASIKSTIE----GGSDTITALALSPD-DKLLFSSGHSREIRVWDL 89 (706)
Q Consensus 23 ~~~~~s~dg~~l~~--------~~~~~i~i~d~~~~~~~~~l~----~~~~~i~~l~~s~~-~~~l~s~~~d~~i~iwd~ 89 (706)
..++|+++|+++++ ..++.|.+||..+++...... ++...+.+++++++ |+++++. ..+.|.+||.
T Consensus 21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~ 99 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQT 99 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEET
T ss_pred cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEEeC
Confidence 47999999998887 445689999988887643322 24567899999999 7655544 3447999999
Q ss_pred CCCeEEEE-eec----cCCCeEEEEECCCCCEEEEecCC---------------CcEEEEECCCCeEEEEeeCCCCcEEE
Q 005254 90 STLKCLRS-WKG----HDGPAIGMACHPSGGLLATAGAD---------------RKVLVWDVDGGFCTHYFKGHKGVVSS 149 (706)
Q Consensus 90 ~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~d---------------~~i~vw~~~~~~~~~~~~~~~~~v~~ 149 (706)
+ ++.... ... ....+.+++++++|++.++...+ +.|..|+.+ ++..... .+......
T Consensus 100 ~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~ 176 (314)
T 1pjx_A 100 D-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNG 176 (314)
T ss_dssp T-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEE
T ss_pred C-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcce
Confidence 8 765443 221 12458899999999888776554 567777766 5543332 23455688
Q ss_pred EEEc----CCCCceEEEEEecCCeEEEEECC-CCe-----eEEEeeccc-ceEEEEEEecCCCEEEEEeCCCEEEEEeCC
Q 005254 150 ILFH----PDTDKSLLFSGSDDATVRVWDLL-AKK-----CVATLDKHF-SRVTSMAITSDGSTLISAGRDKVVNLWDLR 218 (706)
Q Consensus 150 ~~~~----~~~~~~~l~~~~~dg~i~vwd~~-~~~-----~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 218 (706)
++|+ |+++. ++++...++.|.+||.. +++ ....+..+. ..+..++++++|+++++...++.|.+|+.+
T Consensus 177 i~~~~~~d~dg~~-l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 177 IAVRHMNDGRPYQ-LIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEECTTSCEEE-EEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred EEEecccCCCCCE-EEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 9999 87653 34444567899999986 444 222333343 567889999999888877788999999998
Q ss_pred CCcceeeecCc-ceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCC
Q 005254 219 DYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (706)
Q Consensus 219 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 283 (706)
+++....+... ..+..+++.+++. ..+++...++.|..|+...
T Consensus 256 ~g~~~~~~~~~~~~~~~i~~~~dg~----------------------~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 256 GGQPKMRIRCPFEKPSNLHFKPQTK----------------------TIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CBSCSEEEECSSSCEEEEEECTTSS----------------------EEEEEETTTTEEEEEECSS
T ss_pred CCcEeEEEeCCCCCceeEEECCCCC----------------------EEEEEeCCCCeEEEEeCCC
Confidence 77666555443 4566666666653 1345556678888888764
No 218
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.54 E-value=2e-11 Score=118.52 Aligned_cols=298 Identities=8% Similarity=0.020 Sum_probs=180.6
Q ss_pred CCEEEEee-CCeEEEEEccCCeEEEeecCC---------CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 31 GSFIACAC-GESINIVDLSNASIKSTIEGG---------SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 31 g~~l~~~~-~~~i~i~d~~~~~~~~~l~~~---------~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
+..++++. ++.|..+|..+++.+-..... ...+.+.- ..++..+++++.++.|..+|.++|+.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 44555555 458999999999987555432 12232222 22356777888899999999999999887765
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcE-----EEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVV-----SSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
........... +..+++++.++.|..+|..+|+.+.......... ...... + .. ++.+..++.|..+|.
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~-~~--v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F-GA--AVVGGDNGRVSAVLM 205 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T-TE--EEECCTTTEEEEEET
T ss_pred CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C-CE--EEEEcCCCEEEEEEC
Confidence 43322222222 4577888889999999999999887776432211 112222 2 33 777888999999999
Q ss_pred CCCeeEEEeecccce----EEE---EEEec--CCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccc
Q 005254 176 LAKKCVATLDKHFSR----VTS---MAITS--DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDS 246 (706)
Q Consensus 176 ~~~~~~~~~~~~~~~----v~~---~~~~~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (706)
.+++.+......... +.. +.-.| .+..++.++.++.+..+|.++++.........
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~---------------- 269 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS---------------- 269 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC----------------
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC----------------
Confidence 999987766432110 000 00011 23456666667777777776655443321100
Q ss_pred ccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCC
Q 005254 247 FLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQ 326 (706)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (706)
T Consensus 270 -------------------------------------------------------------------------------- 269 (376)
T 3q7m_A 270 -------------------------------------------------------------------------------- 269 (376)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCC-cceEEEeeee
Q 005254 327 QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH-SEIVLCLDTC 405 (706)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~ 405 (706)
...+.. .+..+.+++.++.+..+|..+++........ ........
T Consensus 270 -----------------------------~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~-- 315 (376)
T 3q7m_A 270 -----------------------------VNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPV-- 315 (376)
T ss_dssp -----------------------------EEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCE--
T ss_pred -----------------------------CCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCE--
Confidence 000000 2345555666677888888877766555421 11111111
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
. .+.. ++.++.+|.+.++|..+++.+.........+.+.....++ .|+.++.+|.|..|+
T Consensus 316 ~--~~~~-l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~--~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 316 L--YNGN-LVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADG--KLLIQAKDGTVYSIT 375 (376)
T ss_dssp E--ETTE-EEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETT--EEEEEBTTSCEEEEE
T ss_pred E--ECCE-EEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECC--EEEEEeCCCEEEEEe
Confidence 1 2445 7888889999999999999888776544443332222233 588888999998886
No 219
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.54 E-value=4.8e-08 Score=99.66 Aligned_cols=501 Identities=9% Similarity=0.006 Sum_probs=280.2
Q ss_pred ceEEcCCCCEEEEeeC--CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEE-eccCeEEEEECCCCeEEEEeec
Q 005254 24 PLVVSSDGSFIACACG--ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-GHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~--~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
+|+|++++..|+.+.. +.|..+++........+.........|++.+.+..|..+ ...+.|.+.++........+..
T Consensus 41 ~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~ 120 (628)
T 4a0p_A 41 ALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK 120 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECS
T ss_pred EEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeC
Confidence 6999998888877754 378889887655444444333456789999876666555 4467899999865433222323
Q ss_pred cCCCeEEEEECCCCCEEEEec--CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 101 HDGPAIGMACHPSGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
.-.....|++.|...+|.... ..+.|...+++........ ..-.....+++.++++. ++++-...+.|...|+...
T Consensus 121 ~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~-LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 121 DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRR-LYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCE-EEEEECCCCEEEEEcCCCC
Confidence 445678999999766666654 2567888888755433333 34567899999997665 3444456788999998654
Q ss_pred eeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCc-ceeeeEEeeCCCCCcccccccccchhhh
Q 005254 179 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIK 257 (706)
Q Consensus 179 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (706)
.. ..+.........+++.. +...++-...+.|...|..+++....+... .....+....+......-.+........
T Consensus 199 ~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~ 276 (628)
T 4a0p_A 199 NR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCS 276 (628)
T ss_dssp SC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCS
T ss_pred ce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcc
Confidence 43 33433344556777765 344444445788999998777655444322 1233333332221110000000000000
Q ss_pred cccc-ccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeec
Q 005254 258 KKRR-SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 336 (706)
Q Consensus 258 ~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 336 (706)
.... .....+.+.+..|.... ....++ . +.. .++..+....+.-..+...
T Consensus 277 ~~C~~~~~~~~~C~C~~g~~l~-------------------------~d~~~C--~-~~~-~~Ll~s~~~~i~~i~l~~~ 327 (628)
T 4a0p_A 277 HLCLAVPVGGFVCGCPAHYSLN-------------------------ADNRTC--S-APT-TFLLFSQKSAINRMVIDEQ 327 (628)
T ss_dssp SEEEEETTTEEEEECSTTCEEC-------------------------TTSSCE--E-CCS-SEEEEEETTEEEEECCCTT
T ss_pred hhhhcCCCCCeeEEcCCCcEec-------------------------ccCCcC--c-ccc-ceeeeeccceEEEEecccc
Confidence 0000 00001111111111100 000011 1 112 2333444444544433321
Q ss_pred cccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeC------CcceEEEeeeeeecCC
Q 005254 337 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG------HSEIVLCLDTCALSSG 410 (706)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~~ 410 (706)
... .. ......-..+..+.|.+.++.++.+-...+.|+.++.........+.. ....+..++ +...+
T Consensus 328 ~~~--~~---~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glA--vD~~~ 400 (628)
T 4a0p_A 328 QSP--DI---ILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLS--IDIYS 400 (628)
T ss_dssp CCC--CE---ECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEE--EETTT
T ss_pred cCc--eE---EEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEE--eeccC
Confidence 110 00 011122345778888887777777666778888888765443333322 233566777 77777
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC--eEEEEEecCCCCCCCcccccceeE
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKA 488 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~ 488 (706)
+.+..+-+..+.|.+.++.................++++.|....++.+-.... .|...+++... ...
T Consensus 401 ~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~----------~~~ 470 (628)
T 4a0p_A 401 RYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE----------REV 470 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS----------CEE
T ss_pred CeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC----------cEE
Confidence 886777777889999998654333334445677899999995453444433332 45555554321 111
Q ss_pred EEeecCcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCccEEEEEe-ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 489 VVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 489 ~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
.....-...+.+++.++++.|+.+.. .+.|..+++.... ...+. ........++... +..+.+=...+.|...|..
T Consensus 471 l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~ 548 (628)
T 4a0p_A 471 LFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMT 548 (628)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred EEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECc
Confidence 22223345789999998777766654 5789999985443 33333 3344567777765 4555555566778888877
Q ss_pred CCceEEEEee
Q 005254 567 DGSCLKTFEG 576 (706)
Q Consensus 567 ~~~~~~~~~~ 576 (706)
+++....+..
T Consensus 549 ~G~~~~~i~~ 558 (628)
T 4a0p_A 549 GREGRTKVQA 558 (628)
T ss_dssp SSSCCEEEEC
T ss_pred CCCCcEEEec
Confidence 7766555543
No 220
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.54 E-value=2.2e-08 Score=102.04 Aligned_cols=498 Identities=10% Similarity=0.012 Sum_probs=266.3
Q ss_pred cceEEcCCCCEEEEeeC--CeEEEEEccCCeE-EEeecCCCccEEEEEEccCCCEEEEE-eccCeEEEEECCCCeEEEEe
Q 005254 23 GPLVVSSDGSFIACACG--ESINIVDLSNASI-KSTIEGGSDTITALALSPDDKLLFSS-GHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~--~~i~i~d~~~~~~-~~~l~~~~~~i~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~ 98 (706)
.+|+|++.+..|+.+.- +.|..+++..... ...+...-.....|++.+.+..|..+ ...+.|.+.+.........+
T Consensus 43 ~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~ 122 (619)
T 3s94_A 43 AAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF 122 (619)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred EEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEE
Confidence 36899998888877754 3788888865532 23344333567999999976666555 45789999998754433333
Q ss_pred eccCCCeEEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC
Q 005254 99 KGHDGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176 (706)
Q Consensus 99 ~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 176 (706)
...-.....|++.|.+.+|..... .+.|...+++...........-.....+++.++++. ++++-...+.|...|+.
T Consensus 123 ~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~-LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 123 WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQK-LYWADAKLNFIHKSNLD 201 (619)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTE-EEEEETTTCCEEEESSS
T ss_pred eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCE-EEEEeCCCCeEEEecCC
Confidence 334456778999998776666542 466777777654433333334556899999997665 34444566789999886
Q ss_pred CCeeEEEeecccceEEEEEEecCCCEEEEE-eCCCEEEEEeCCCCcceeeecCc-ceeeeEEeeCCC-CCcccccccccc
Q 005254 177 AKKCVATLDKHFSRVTSMAITSDGSTLISA-GRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPG-SAFDSFLSSYNQ 253 (706)
Q Consensus 177 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 253 (706)
.........+.......+++..+ .|+.+ ...+.|...|..+++....+... .....+...... .......+....
T Consensus 202 G~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~n 279 (619)
T 3s94_A 202 GTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDN 279 (619)
T ss_dssp CCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTG
T ss_pred CCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCC
Confidence 54333222222223346666555 44444 45678888888777655444332 123333332211 100000000000
Q ss_pred hhhhcccc--ccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEE
Q 005254 254 QTIKKKRR--SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (706)
Q Consensus 254 ~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (706)
........ .......+.+..|.. ... ...+ ..+..+.++..+..+.+...
T Consensus 280 g~Cs~lCl~~~~~~~~~C~C~~g~~-----------------------l~~--d~~~---C~~~~~~~Ll~~~~~~i~~i 331 (619)
T 3s94_A 280 GGCSHLCLMSPVKPFYQCACPTGVK-----------------------LLE--NGKT---CKDGATELLLLARRTDLRRI 331 (619)
T ss_dssp GGCSSEEEECSSTTSEEEECCTTCC-----------------------BCT--TSSC---BCSSCSEEEEEEESSCEEEE
T ss_pred CcccceEECCCCCCCceEeCCchhe-----------------------ecc--cCcc---cCCCCceEEEEEcccceEEE
Confidence 00000000 000001111111110 000 0000 00112334455555666666
Q ss_pred EeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCC
Q 005254 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK 411 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 411 (706)
.+......... .....-..+..++|.+.++.++.+-...+.|+.+++........+.........++ +...++
T Consensus 332 ~l~~~~~~~~~-----~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlA--vD~~~~ 404 (619)
T 3s94_A 332 SLDTPDFTDIV-----LQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIA--VDWVAR 404 (619)
T ss_dssp ESSSTTCCCEE-----CCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE--EETTTT
T ss_pred ecCCCccceeE-----EeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceE--EecccC
Confidence 55433211110 00111234677888876777777766778899998876544434443334455666 666677
Q ss_pred EEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEe-cCCCeEEEEEecCCCCCCCcccccceeEEE
Q 005254 412 ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 490 (706)
.+..+-...+.|.+.++............-....++++.|....+.++- +....|...+++... .....
T Consensus 405 ~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~----------~~~l~ 474 (619)
T 3s94_A 405 NLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD----------RVVLV 474 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----------CEEEE
T ss_pred cEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc----------cEEEE
Confidence 7666666778999998876543333444556788999999755344443 223566666655431 11122
Q ss_pred eecCcceEEEEEcCCCCEEEEee-CCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc
Q 005254 491 AAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 569 (706)
Q Consensus 491 ~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 569 (706)
...-...+.+++++++..|+.+. ..+.|..+++........+.........++...+ ...++-...+.|...|..++.
T Consensus 475 ~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 475 NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 22345678999998776666655 4567888988644333222222222334555433 333444445667777776663
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.53 E-value=8.2e-12 Score=121.21 Aligned_cols=194 Identities=12% Similarity=0.147 Sum_probs=138.9
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccC--eEEEEECCCCeEEEEe--
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSR--EIRVWDLSTLKCLRSW-- 98 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~-- 98 (706)
.|+++++|+++++...+ .|++||+.+++..........+ . ++|+|+++.|+++..++ .|.+|+..++.....+
T Consensus 135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~ 212 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ 212 (409)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE
T ss_pred EEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee
Confidence 69999999977666554 8999999888876655543333 3 99999999999887765 8999998766544444
Q ss_pred --eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE----eeCCCCcE-E-EEEEcCCCCceEEEEEecCCeE
Q 005254 99 --KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY----FKGHKGVV-S-SILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 99 --~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~----~~~~~~~v-~-~~~~~~~~~~~~l~~~~~dg~i 170 (706)
......+.+++++|++..|+++..++.|+.||.+++..... ..++...- . .++|+|++.. ++++...++.|
T Consensus 213 ~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~-lyv~d~~~~~I 291 (409)
T 3hrp_A 213 LGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN-FYMSDQNLSSV 291 (409)
T ss_dssp CCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE-EEEEETTTTEE
T ss_pred ccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE-EEEEeCCCCEE
Confidence 22456778999999655666677788999999987764332 22222222 3 9999996443 46666778899
Q ss_pred EEEECCCCeeEEEeeccc---------------ceEEEEEEecCCCEEEEEe-CCCEEEEEeCCCCcc
Q 005254 171 RVWDLLAKKCVATLDKHF---------------SRVTSMAITSDGSTLISAG-RDKVVNLWDLRDYSC 222 (706)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~ 222 (706)
+.|+.... +..+.++. .....++++++|+++++-. .++.|+.|++.++..
T Consensus 292 ~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 292 YKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp EEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred EEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 99997543 23332322 3478999999999666666 788999999877654
No 222
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.52 E-value=3.1e-11 Score=117.20 Aligned_cols=237 Identities=10% Similarity=0.048 Sum_probs=161.5
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC--eEEEEEecCCC
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLS 475 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~i~~~~~~~ 475 (706)
....++ +.+++. ++++...++.|+.||..++.......... ... ++|+++++ .|+++..++ .|.+++.....
T Consensus 132 ~P~~la--~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 132 YMWGIA--AVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CEEEEE--ECSTTE-EEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSS-EEEEEBSSTTCEEEEEEGGGTT
T ss_pred CceEEE--EeCCCC-EEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCC-cEEEEecCCCceEEEEEcCCCc
Confidence 455665 666665 47777778999999999887776655433 333 99999988 666666654 78888775432
Q ss_pred CCCCcccccceeEEEee-cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEE----EeecCCcE--EEEEEccC-
Q 005254 476 DDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT----FRGHKRGI--WSVEFSPV- 547 (706)
Q Consensus 476 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v--~~~~~s~~- 547 (706)
. ......... ....+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++|+|+
T Consensus 206 ~-------~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 206 A-------PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp C-------EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred e-------eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence 1 000001111 345678899999555555577788999999987754332 22222222 28999995
Q ss_pred CCEEEEecCCCcEEEEEcCCCceEEEEeecc---------------cCEEEEEEEeCCCEEEEEe-CCCCEEEEECCCCe
Q 005254 548 DQVVITASGDKTIKIWSISDGSCLKTFEGHT---------------SSVLRASFLTRGAQIVSCG-ADGLVKLWTVRTGE 611 (706)
Q Consensus 548 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 611 (706)
+.++++-..++.|+.|+... + +..+.++. .....++++++|+++++-. .++.|+.|++.+++
T Consensus 279 g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp TEEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred CEEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 56666666788999999753 3 33443332 3478999999999777777 78999999988887
Q ss_pred EEEEeccC---------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 612 CIATYDKH---------------EDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 612 ~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.. .+.++ -.....+++++++.++++-..++.|+.++++
T Consensus 357 v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 357 VS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 43 33333 2458899999998888888888888887753
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.51 E-value=2.1e-11 Score=126.33 Aligned_cols=269 Identities=11% Similarity=0.031 Sum_probs=178.1
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCC-c----ceEEEeeeeeecCCCEEEEEeeC------CCcEEEEeCCCceEEE
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGH-S----EIVLCLDTCALSSGKILIVTGSK------DNSVRLWDSESRCCVG 435 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~----~~i~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~ 435 (706)
..+++++.++.+..+|..+++.+..+... . ..+..- ....+.. +++++. ++.|+.+|..+++.+.
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~---p~v~~~~-v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGA---PRVFKGK-VIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSC---CEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccC---cEEECCE-EEEEecccccCCCCEEEEEECCCCcEEE
Confidence 35566666777888888777777666544 1 111111 1112344 444443 6899999999999987
Q ss_pred EEeCCCcC--------------------------------eEEEEEecCCCeEEEEecCCC-------------------
Q 005254 436 VGTGHMGA--------------------------------VGAVAFSKKLQNFLVSGSSDH------------------- 464 (706)
Q Consensus 436 ~~~~~~~~--------------------------------v~~~~~~~~~~~~l~~~~~d~------------------- 464 (706)
.+...... ...+++++++. +++.+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeE
Confidence 76542211 12467888866 666665553
Q ss_pred eEEEEEecCCCCCCCcccccceeEEEee--c-------CcceEEEEEcCCC---CEEEEeeCCCcEEEEeCCCccEEEEE
Q 005254 465 TIKVWSFDGLSDDAEQPMNLKAKAVVAA--H-------GKDINSLAVAPND---SLVCTGSQDRTACVWRLPDLVSVVTF 532 (706)
Q Consensus 465 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~i~~~~~s~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~ 532 (706)
.|..+|..+++ ....... | ......+....+| ..++.++.+|.++++|..+++.+..+
T Consensus 284 sv~AlD~~TG~----------~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 284 SIVALDPDTGK----------YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp EEEEECTTTCC----------EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCC----------EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 47777777653 2222221 1 1122233344477 68999999999999999999998776
Q ss_pred eecC-----------CcE------------------------EEEEEccCCCEEEEecC---------------------
Q 005254 533 RGHK-----------RGI------------------------WSVEFSPVDQVVITASG--------------------- 556 (706)
Q Consensus 533 ~~~~-----------~~v------------------------~~~~~s~~~~~l~~~~~--------------------- 556 (706)
+... .++ ..++++|+..++++...
T Consensus 354 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~ 433 (677)
T 1kb0_A 354 NFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGK 433 (677)
T ss_dssp ESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTS
T ss_pred cccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccc
Confidence 5321 011 14688998888877532
Q ss_pred ----------------------CCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE
Q 005254 557 ----------------------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614 (706)
Q Consensus 557 ----------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 614 (706)
.|.|..||+.+++.+..+. +..++....++.++..++.++.||.+++||..+|+.+.
T Consensus 434 ~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 434 PQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp TTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence 2789999999999988876 44455566778888899999999999999999999999
Q ss_pred EeccCC-CcEEEEEEcCCCCEEE-EEeC----------------CCcEEEEECCc
Q 005254 615 TYDKHE-DKIWALAVGKKTEMFA-TGGS----------------DALVNLWHDST 651 (706)
Q Consensus 615 ~~~~~~-~~v~~~~~s~~~~~l~-~~~~----------------dg~i~vw~~~~ 651 (706)
.+.... ..-..+.+..+|+.++ +.+. .+.+..|.+..
T Consensus 513 ~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 513 EAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred eeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 987433 2234456667887444 3222 47888998873
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.50 E-value=8.5e-11 Score=114.00 Aligned_cols=307 Identities=10% Similarity=0.055 Sum_probs=187.5
Q ss_pred CCEEEEEeccCeEEEEECCCCeEEEEeeccC---------CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeC
Q 005254 72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHD---------GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG 142 (706)
Q Consensus 72 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 142 (706)
+..+++++.++.|..+|.++|+.+....... ..+.+. ...++..+++++.++.|..+|.++|+.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 6678888889999999999999987776431 223222 222456788888899999999999998877664
Q ss_pred CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceE-----EEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 143 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRV-----TSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 143 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
........... + .. ++.++.++.|..+|..+++.+.......... ...... +..+++++.++.+..+|.
T Consensus 132 ~~~~~~~p~~~-~-~~--v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 132 AGEALSRPVVS-D-GL--VLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp SSCCCSCCEEE-T-TE--EEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred CCceEcCCEEE-C-CE--EEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence 33222222222 2 33 7888899999999999999887765432211 112222 346888888999999999
Q ss_pred CCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccc
Q 005254 218 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 297 (706)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 297 (706)
.+++................ . ++.+
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~---~-----------------------------------~~~~----------------- 230 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEI---D-----------------------------------RLSD----------------- 230 (376)
T ss_dssp TTCCEEEEEECCC-------------------------------------------------C-----------------
T ss_pred CCCcEEEEEecccCCCCccc---c-----------------------------------cccc-----------------
Confidence 88876655432211000000 0 0000
Q ss_pred cccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCc
Q 005254 298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 377 (706)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 377 (706)
....++ . .+..+.+++.++.
T Consensus 231 -----------------------------------------------------~~~~p~----~---~~~~v~~~~~~g~ 250 (376)
T 3q7m_A 231 -----------------------------------------------------VDTTPV----V---VNGVVFALAYNGN 250 (376)
T ss_dssp -----------------------------------------------------CCCCCE----E---ETTEEEEECTTSC
T ss_pred -----------------------------------------------------cCCCcE----E---ECCEEEEEecCcE
Confidence 000000 0 1245555666778
Q ss_pred EEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-CCcCeEEEEEecCCCeE
Q 005254 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKLQNF 456 (706)
Q Consensus 378 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 456 (706)
+..+|..+++......... ...+ ...+.. +..++.++.+..+|..+++.+..... ....+....... . .
T Consensus 251 l~~~d~~tG~~~w~~~~~~--~~~~----~~~~~~-l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~--~-~ 320 (376)
T 3q7m_A 251 LTALDLRSGQIMWKRELGS--VNDF----IVDGNR-IYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYN--G-N 320 (376)
T ss_dssp EEEEETTTCCEEEEECCCC--EEEE----EEETTE-EEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEET--T-E
T ss_pred EEEEECCCCcEEeeccCCC--CCCc----eEECCE-EEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEEC--C-E
Confidence 8888888877665544322 2222 123555 77778899999999999998877652 222333333332 2 6
Q ss_pred EEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEE-EEEcCCCCEEEEeeCCCcEEEEe
Q 005254 457 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS-LAVAPNDSLVCTGSQDRTACVWR 522 (706)
Q Consensus 457 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~dg~i~i~d 522 (706)
++.++.+|.+..+|..+++ ...........+.. ... .+..|++++.+|.|+.|+
T Consensus 321 l~v~~~~g~l~~~d~~tG~----------~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 321 LVVGDSEGYLHWINVEDGR----------FVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEECTTSEEEEEETTTCC----------EEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCc----------EEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 8888899999999987764 22222222222221 222 245778888999999886
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.50 E-value=1.5e-10 Score=109.15 Aligned_cols=216 Identities=11% Similarity=-0.034 Sum_probs=149.2
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
+.++++.++++...++.|..||..+++... +. ....+.+++++++++ ++++. .+ .|.+||...+.
T Consensus 56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~-l~v~~-~~-gl~~~d~~~g~---------- 120 (326)
T 2ghs_A 56 FDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSK-QLIAS-DD-GLFLRDTATGV---------- 120 (326)
T ss_dssp EETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTE-EEEEE-TT-EEEEEETTTCC----------
T ss_pred EeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCe-EEEEE-CC-CEEEEECCCCc----------
Confidence 778777778888888999999998876543 22 346799999999987 44443 33 48888876542
Q ss_pred eeEEEe----ecCcceEEEEEcCCCCEEEEeeC------CCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEe-
Q 005254 486 AKAVVA----AHGKDINSLAVAPNDSLVCTGSQ------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA- 554 (706)
Q Consensus 486 ~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~- 554 (706)
...... .....+..++++|+|+++++... .+.|..++ +++.. .+..+......++|+|+++.|+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEE
T ss_pred EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEE
Confidence 111111 11235789999999997765442 24566666 44433 333344557889999999876554
Q ss_pred cCCCcEEEEEcC--CC-ce-----EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEE
Q 005254 555 SGDKTIKIWSIS--DG-SC-----LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL 626 (706)
Q Consensus 555 ~~dg~i~iwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 626 (706)
+.++.|.+||+. ++ +. ...+......+..+++.++|++.++...++.|.+||. +++.+..+..+...++++
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 557889999986 55 32 2222223345678999999988877777788999998 688888887777789999
Q ss_pred EEc-CCCCEEEEEeC
Q 005254 627 AVG-KKTEMFATGGS 640 (706)
Q Consensus 627 ~~s-~~~~~l~~~~~ 640 (706)
+|+ ++++.|.+++.
T Consensus 277 af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 277 AFIGPDASRLLVTSA 291 (326)
T ss_dssp EEESTTSCEEEEEEB
T ss_pred EEecCCCCEEEEEec
Confidence 998 88876655443
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.49 E-value=2.7e-11 Score=113.34 Aligned_cols=224 Identities=14% Similarity=0.076 Sum_probs=154.4
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCC
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 477 (706)
...... +.++++.++++...++.|..|+. +++ ...+..+...+..++++++|+ ++++...++.|..|+.. +.
T Consensus 46 ~~egp~--~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~-- 117 (305)
T 3dr2_A 46 WSEGPA--WWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQ-- 117 (305)
T ss_dssp SEEEEE--EEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC--
T ss_pred CccCCe--EeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEECCC-CC--
Confidence 334444 78888877888888999999998 444 344455667789999999987 66665666789998864 21
Q ss_pred CCcccccceeEEEe----ecCcceEEEEEcCCCCEEEE----eeC-------------CCcEEEEeCCCccEEEEEeecC
Q 005254 478 AEQPMNLKAKAVVA----AHGKDINSLAVAPNDSLVCT----GSQ-------------DRTACVWRLPDLVSVVTFRGHK 536 (706)
Q Consensus 478 ~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~ 536 (706)
...... .....+..++++|+|+++++ |.. .+.|..+|..+++..... ..
T Consensus 118 --------~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~ 187 (305)
T 3dr2_A 118 --------AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL 187 (305)
T ss_dssp --------EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred --------EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence 111111 11234678999999998886 332 246778887666554433 34
Q ss_pred CcEEEEEEccCCCEEEEecCC------CcEEEEEcCCCceE--EEE-eecccCEEEEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 537 RGIWSVEFSPVDQVVITASGD------KTIKIWSISDGSCL--KTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 537 ~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~--~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
.....++|+||++.|+.+... +.|.+|++..+... ..+ .........+++.++|++.++ +.+| |.+|+.
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~g-v~~~~~ 265 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGTG-VCVFDS 265 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSSE-EEEECT
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCCc-EEEECC
Confidence 557889999999988777665 68999998765411 111 112234456889999985444 4554 999998
Q ss_pred CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc
Q 005254 608 RTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL 643 (706)
Q Consensus 608 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 643 (706)
+++.+..+..+. .+..++|+++++.|..++.++.
T Consensus 266 -~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 -DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred -CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 688887777655 5889999999988887777653
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.49 E-value=3.2e-11 Score=125.27 Aligned_cols=259 Identities=11% Similarity=0.029 Sum_probs=164.5
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCC--cceEEEeeeeeecCCCEEEEEee------CCCcEEEEeCCCceEEEEEe
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGH--SEIVLCLDTCALSSGKILIVTGS------KDNSVRLWDSESRCCVGVGT 438 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~ 438 (706)
..+++++.++.+..+|..+++.+...... ......+.....-.+.. ++++. .+|.|+.||..+++.+..+.
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 34555666677777777777766555432 10000000000011334 44443 36899999999999887765
Q ss_pred CCC-------------------------------cCeEEEEEecCCCeEEEEecCCCe-------------------EEE
Q 005254 439 GHM-------------------------------GAVGAVAFSKKLQNFLVSGSSDHT-------------------IKV 468 (706)
Q Consensus 439 ~~~-------------------------------~~v~~~~~~~~~~~~l~~~~~d~~-------------------i~i 468 (706)
... .....++++|+.. +++.+..++. |..
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 210 0112577888766 6777776653 888
Q ss_pred EEecCCCCCCCcccccceeEEEee--c-------CcceEEEEEcCCCC---EEEEeeCCCcEEEEeCCCccEEEEEeecC
Q 005254 469 WSFDGLSDDAEQPMNLKAKAVVAA--H-------GKDINSLAVAPNDS---LVCTGSQDRTACVWRLPDLVSVVTFRGHK 536 (706)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 536 (706)
+|..+++ ....... | ..++.......+|+ .++.++.+|.++++|..+++.+...+...
T Consensus 280 lD~~TG~----------~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~ 349 (689)
T 1yiq_A 280 VNADTGE----------YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVP 349 (689)
T ss_dssp EETTTCC----------EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred EEccCCc----------eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccc
Confidence 8888764 2222221 1 11222223333565 78899999999999999999875433111
Q ss_pred C---------------------------------------cEEEEEEccCCCEEEEecC---------------------
Q 005254 537 R---------------------------------------GIWSVEFSPVDQVVITASG--------------------- 556 (706)
Q Consensus 537 ~---------------------------------------~v~~~~~s~~~~~l~~~~~--------------------- 556 (706)
. .-..++|+|+..++++...
T Consensus 350 ~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~ 429 (689)
T 1yiq_A 350 QSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSM 429 (689)
T ss_dssp CSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTS
T ss_pred cccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccc
Confidence 0 0012688888887776521
Q ss_pred ------------------------CCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE
Q 005254 557 ------------------------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC 612 (706)
Q Consensus 557 ------------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 612 (706)
+|.|+.||+.+++.+..+..+. +.....++..+.++++++.||.|+.||.++|+.
T Consensus 430 ~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 430 YQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp CCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence 3789999999999988877543 344456777888999999999999999999999
Q ss_pred EEEeccCCCc-EEEEEEcCCCCE-EEEE
Q 005254 613 IATYDKHEDK-IWALAVGKKTEM-FATG 638 (706)
Q Consensus 613 ~~~~~~~~~~-v~~~~~s~~~~~-l~~~ 638 (706)
+..++...+. ...+.|..+|+. +++.
T Consensus 509 lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 509 LWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred ceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 9988754332 244667778874 4443
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.48 E-value=4.6e-11 Score=124.11 Aligned_cols=378 Identities=11% Similarity=0.076 Sum_probs=211.8
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCCcc----------E-EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGSDT----------I-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~----------i-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
++.+++....+.|+-+|..+|+.+-.++.+... + ..+++ ++..|++++.|+.|..+|.++|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 444444444458999999999988766543210 0 11222 3567888889999999999999999887
Q ss_pred ecc--CCCeEEEEECC---CCCEEEEec------CCCcEEEEECCCCeEEEEeeCCC-----------------------
Q 005254 99 KGH--DGPAIGMACHP---SGGLLATAG------ADRKVLVWDVDGGFCTHYFKGHK----------------------- 144 (706)
Q Consensus 99 ~~~--~~~v~~~~~s~---~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~----------------------- 144 (706)
... ......+..+| ++ .+++++ .++.|..||..+|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 642 11111112222 44 444443 36899999999999987765210
Q ss_pred --------CcEEEEEEcCCCCceEEEEEecCC-------------------eEEEEECCCCeeEEEeec--cc-------
Q 005254 145 --------GVVSSILFHPDTDKSLLFSGSDDA-------------------TVRVWDLLAKKCVATLDK--HF------- 188 (706)
Q Consensus 145 --------~~v~~~~~~~~~~~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~--~~------- 188 (706)
.....+++.|+.+. ++.+..++ .|..||..+|+.+..++. |.
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~--vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNL--LYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTE--EEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred eeecCCCCccccceeEcCCCCE--EEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 01125778887655 77776665 399999999999887754 21
Q ss_pred ceEEEEEEecCCC---EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeC-CCCCcccccccccchhhhccccccc
Q 005254 189 SRVTSMAITSDGS---TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP-PGSAFDSFLSSYNQQTIKKKRRSLE 264 (706)
Q Consensus 189 ~~v~~~~~~~~~~---~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
.+........+|+ .++.++.+|.++++|.++++.+...+...........+ .+.... ....... .....
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~------~~~~~~~-~~~~~ 377 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPIL------DEENAAY-WKNGK 377 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEE------CHHHHCT-TTSSS
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCccc------chhhccc-cCCCC
Confidence 1222223333665 78889999999999999999876654332110000000 000000 0000000 00000
Q ss_pred eEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeE
Q 005254 265 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 344 (706)
Q Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (706)
..++ +...........+++.|+...+++...+.....+.....+. .
T Consensus 378 ~~~~-----------------------------~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~--~--- 423 (689)
T 1yiq_A 378 RNLV-----------------------------TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPK--R--- 423 (689)
T ss_dssp CEEE-----------------------------SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCC--C---
T ss_pred eeEe-----------------------------CCCcccccCCCcceECCCCCEEEEeccccceeeeecccccc--c---
Confidence 0000 00011112234467888888777777665555443221100 0
Q ss_pred EeeEecccCcee-eE--eeEeCCC--CcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC
Q 005254 345 LSKRLVGYNEEI-LD--LKFLGEE--EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 419 (706)
Q Consensus 345 ~~~~~~~~~~~v-~~--~~~~~~~--~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 419 (706)
......+ .. +...|.. +........+|.+..||+.+++.......+...... . +...+.. ++.++.
T Consensus 424 -----~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g-~--~~taggl-vf~gt~ 494 (689)
T 1yiq_A 424 -----NPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGG-T--LSTAGNL-VFEGSA 494 (689)
T ss_dssp -----CSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCC-E--EEETTTE-EEEECT
T ss_pred -----cccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCc-c--ceECCCE-EEEECC
Confidence 0000000 00 0000000 000000001378999999999988877655432211 1 4445665 788899
Q ss_pred CCcEEEEeCCCceEEEEEeCCCcC-eEEEEEecCCCeEEEEecC
Q 005254 420 DNSVRLWDSESRCCVGVGTGHMGA-VGAVAFSKKLQNFLVSGSS 462 (706)
Q Consensus 420 dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~ 462 (706)
||.++.||.++++.+..++...+. ...+.|..+|+.++++.+.
T Consensus 495 dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 495 DGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 999999999999999888755333 3457778888877766544
No 229
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.48 E-value=2.9e-10 Score=105.73 Aligned_cols=226 Identities=9% Similarity=-0.024 Sum_probs=157.3
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEE
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 434 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 434 (706)
-.-+..|.+.++.++.+....+.|..||..++... .+. ....+.++. +.++++. +++ . ++.|.+||..+++..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~--~~~dG~l-~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVA--LRQSGGY-VAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEE--EBTTSSE-EEE-E-TTEEEEEETTTTEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEE--ECCCCCE-EEE-E-CCeEEEEECCCCcEE
Confidence 34467777777788888888899999999887653 222 235677776 7788874 443 3 568999999888755
Q ss_pred EEEeC----CCcCeEEEEEecCCCeEEEEecC---------CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEE
Q 005254 435 GVGTG----HMGAVGAVAFSKKLQNFLVSGSS---------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 435 ~~~~~----~~~~v~~~~~~~~~~~~l~~~~~---------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (706)
..... ....+..++++|+|+ ++++... ...-.+|.+.... ..............++
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----------~~~~~~~~~~~pngi~ 155 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH----------HVKKYFDQVDISNGLD 155 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS----------CEEEEEEEESBEEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC----------CEEEEeeccccccceE
Confidence 44332 234578899999988 4444322 2334666665321 1111222334567899
Q ss_pred EcCCCCEEEE-eeCCCcEEEEeC--CCccEE-----EEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 502 VAPNDSLVCT-GSQDRTACVWRL--PDLVSV-----VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 502 ~s~~~~~l~~-~~~dg~i~i~d~--~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
|+||++.|+. .+.++.|.+|++ .++... ..+..+...+..++++++|++.++....+.|.+||..+++.+..
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence 9999987654 455788999987 455432 22233445678999999998888877788899999988999999
Q ss_pred EeecccCEEEEEEE-eCCCEEEEEeC
Q 005254 574 FEGHTSSVLRASFL-TRGAQIVSCGA 598 (706)
Q Consensus 574 ~~~~~~~i~~~~~s-~~~~~l~~~~~ 598 (706)
+..+...+++++|. |+++.|+.++.
T Consensus 236 i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 VKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EECCCCCceEEEEeCCCCCEEEEEcC
Confidence 88777789999999 88887766554
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.46 E-value=1.8e-12 Score=123.54 Aligned_cols=218 Identities=11% Similarity=0.006 Sum_probs=138.7
Q ss_pred EEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec
Q 005254 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (706)
+..++.++.+..+|.. ++...........+.++...+++. +..++.++.+..+|.. +. ........
T Consensus 110 l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~----------~~~~~~~~ 175 (330)
T 3hxj_A 110 LYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GT----------EKWRFKTN 175 (330)
T ss_dssp EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SC----------EEEEEECS
T ss_pred EEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CC----------EeEEEecC
Confidence 4444455556666655 444444443444445555555554 5556666777777765 32 22222233
Q ss_pred CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
...+.++.+.+++.+.+.. +.+..+| .+++...........+.++...+++. |..++.++.+..+|. +++.+..
T Consensus 176 ~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~ 249 (330)
T 3hxj_A 176 DAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWR 249 (330)
T ss_dssp SCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEE
T ss_pred CCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEE
Confidence 4456667777777755544 7799999 77777777766666788888888876 445566777888874 6666666
Q ss_pred EeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 574 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 574 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+......+..+.+.+++ .|..++.+|.|..+|. +++.+..+......+.++..+++++ |..++.+|.+.+...+..+
T Consensus 250 ~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 250 FKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp EECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred eeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 65443333445554455 6677788888999996 7887777766566677888878886 4558889999998766554
Q ss_pred H
Q 005254 654 E 654 (706)
Q Consensus 654 ~ 654 (706)
.
T Consensus 327 ~ 327 (330)
T 3hxj_A 327 H 327 (330)
T ss_dssp -
T ss_pred c
Confidence 3
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.46 E-value=9.4e-12 Score=116.96 Aligned_cols=164 Identities=12% Similarity=-0.028 Sum_probs=115.6
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe----------ccCeEEEEECCCCeEEEEeecc-------CC
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----------HSREIRVWDLSTLKCLRSWKGH-------DG 103 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~-------~~ 103 (706)
.|.++|..+++.+.++.....+ .++++||+++++++. .++.|.+||..+++.+.++..+ ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999999988766667 799999999999886 3688999999999999998743 12
Q ss_pred CeEEEEECCCCCEEEEecC--CCcEEE--EECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC--
Q 005254 104 PAIGMACHPSGGLLATAGA--DRKVLV--WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-- 177 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~~~~~--d~~i~v--w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-- 177 (706)
....++|+|||++++++.. +..+.+ +|..+ +..+.. .+. ..+.|+++.. +++.+.||.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~---~~~~p~g~~~-~~~~~~dg~~~~vd~~~~~ 196 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC---FHIHPGAAAT-HYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC---CCCEEEETTE-EECCCCTTSCEEEECCSSC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc---eEEccCCCeE-EEEEcCCCCEEEEECcccc
Confidence 3568999999999998864 467888 88877 344432 111 2234565553 45666788888888876
Q ss_pred ---CeeEEE----eecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 178 ---KKCVAT----LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 178 ---~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
++.... +.....+. . ++++..++..+. +.+.+.|...
T Consensus 197 ~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~ 240 (368)
T 1mda_H 197 AAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPA 240 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCS
T ss_pred ccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCC
Confidence 443211 11112233 3 666666666666 8888888754
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.44 E-value=1.5e-10 Score=120.10 Aligned_cols=193 Identities=13% Similarity=0.103 Sum_probs=130.6
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCCcc-----------EEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGSDT-----------ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~-----------i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
++.+++....+.|+-+|..+|+.+-.++..... -..+++ ++..|++++.|+.|..+|.++|+.+.++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 454444444468999999999988666543210 112333 4667888889999999999999999988
Q ss_pred ecc-C----CCeEE-EEECCCCCEEEEecC------CCcEEEEECCCCeEEEEeeCCCCc--------------------
Q 005254 99 KGH-D----GPAIG-MACHPSGGLLATAGA------DRKVLVWDVDGGFCTHYFKGHKGV-------------------- 146 (706)
Q Consensus 99 ~~~-~----~~v~~-~~~s~~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~-------------------- 146 (706)
..+ . ..+.+ ... .+..+++++. ++.|+.+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 754 2 11211 111 2345555543 689999999999998877542211
Q ss_pred ------------EEEEEEcCCCCceEEEEEecCC-------------------eEEEEECCCCeeEEEeec--cc-----
Q 005254 147 ------------VSSILFHPDTDKSLLFSGSDDA-------------------TVRVWDLLAKKCVATLDK--HF----- 188 (706)
Q Consensus 147 ------------v~~~~~~~~~~~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~--~~----- 188 (706)
...+++.|+++. ++.+..++ .|..+|..+|+.+..++. |.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~--vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~ 310 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNT--MYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT 310 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTE--EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred CceeEeCCCcccccceeEcCCCCE--EEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence 135678887665 55555443 599999999999877653 21
Q ss_pred --ceEEEEEEecCC---CEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 189 --SRVTSMAITSDG---STLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 189 --~~v~~~~~~~~~---~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
.....+....+| ..++.++.+|.++++|..+++.+...+.
T Consensus 311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~ 355 (677)
T 1kb0_A 311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNF 355 (677)
T ss_dssp CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccc
Confidence 122233444577 6889999999999999999998776543
No 233
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.43 E-value=2.2e-11 Score=114.51 Aligned_cols=294 Identities=9% Similarity=-0.042 Sum_probs=170.4
Q ss_pred eEEEEEecCC----eEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEe----------CCCEEEEEeCCCCccee
Q 005254 159 SLLFSGSDDA----TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG----------RDKVVNLWDLRDYSCKL 224 (706)
Q Consensus 159 ~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~~w~~~~~~~~~ 224 (706)
.++++...++ .|.++|..+++.+..+.....+ .+.++||+++++++. .++.|.+||..+++.+.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~ 110 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA 110 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence 3455555455 8889999999999998766566 799999999999886 36899999999998887
Q ss_pred eecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCc
Q 005254 225 TVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSK 304 (706)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (706)
.++........ ..
T Consensus 111 ~I~v~~~~~~~-------------------------------------------------------------------~g 123 (368)
T 1mda_H 111 DIELPDAPRFS-------------------------------------------------------------------VG 123 (368)
T ss_dssp EEEETTSCSCC-------------------------------------------------------------------BS
T ss_pred EEECCCccccc-------------------------------------------------------------------cC
Confidence 76532100000 00
Q ss_pred cceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEE--Ee
Q 005254 305 RGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV--YD 382 (706)
Q Consensus 305 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~--~d 382 (706)
.....+.++|+++.+++.... ....+.+ +|
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~------------------------------------------------~~~~v~V~~iD 155 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFG------------------------------------------------SSAAAGLSVPG 155 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECS------------------------------------------------SSCEEEEEETT
T ss_pred CCcceEEEcCCCCEEEEEccC------------------------------------------------CCCeEEEEEEc
Confidence 011223334444443333221 0123444 44
Q ss_pred CCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC-----ceEEEE----EeCCCcCeEEEEEecCC
Q 005254 383 LSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-----RCCVGV----GTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 383 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~----~~~~~~~v~~~~~~~~~ 453 (706)
..+ ...+.... +.. ..|+++..+++.+.||.+.+.++.+ ++.... +.....+. + .+++
T Consensus 156 ~~t---v~~i~v~~----~~~--~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~ 222 (368)
T 1mda_H 156 ASD---DQLTKSAS----CFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP 222 (368)
T ss_dssp TEE---EEEEECSS----CCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT
T ss_pred hhh---ceEEECCC----ceE--EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccC
Confidence 443 11221110 011 2344444466667788888888876 433211 11112222 3 5665
Q ss_pred CeEEEEecCCCeEEEEEecCCCCCCCccccccee--EEEeecCcceEEEEEcCCCCEEEEeeC-C--------CcEEEEe
Q 005254 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK--AVVAAHGKDINSLAVAPNDSLVCTGSQ-D--------RTACVWR 522 (706)
Q Consensus 454 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~-d--------g~i~i~d 522 (706)
..+++ .+. +.+.+.|+................ ............++++||++.++++.. + +.+.++|
T Consensus 223 ~~~~~-vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD 300 (368)
T 1mda_H 223 GMLVW-AVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300 (368)
T ss_dssp TEEEE-CBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred CEEEE-EcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEE
Confidence 53444 444 889999986432100000000000 000000111222689999998887643 2 3567999
Q ss_pred CCCccEEEEEeecCCcEEEEEEccCCC-EEEEec-CCCcEEEEEcCCCceEEEEeecccCEEEEEE
Q 005254 523 LPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITAS-GDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586 (706)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 586 (706)
+.+.+.+..+.... ....++|+||++ .+++.. .++.|.++|+.+++.+.++.....+ ..+++
T Consensus 301 ~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P-~~i~~ 364 (368)
T 1mda_H 301 ASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP-ESLSV 364 (368)
T ss_dssp SSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC-CEEEC
T ss_pred CCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC-CEEEe
Confidence 99999988887544 578999999998 455665 5899999999999999998754432 34444
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.43 E-value=9.2e-12 Score=118.64 Aligned_cols=184 Identities=12% Similarity=0.171 Sum_probs=125.9
Q ss_pred cceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 23 GPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
.+.++..+|.+.+...++.|..|| .+++.+.....+...+.++...++|.+.+ ++.+ |..+|. +++.+..+....
T Consensus 23 ~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 23 SSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC--
T ss_pred cCceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCC
Confidence 357777788766555566899999 88888766665556678888888886444 4444 888886 676655554333
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEE
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 182 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 182 (706)
.......+. +..|.+++.++.|..+|.+ ++.......+...+.++...+++. ++.++.++.|..+|.. ++...
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~-g~~~~ 170 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPD-GTEKW 170 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTT-SCEEE
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCC-CCEeE
Confidence 333333333 5567778888999999998 777776665656666777776655 7778888999999998 87776
Q ss_pred EeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcc
Q 005254 183 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC 222 (706)
Q Consensus 183 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~ 222 (706)
.+......+.++.+.+++. ++.++ +.|..+| .+++.
T Consensus 171 ~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~ 206 (330)
T 3hxj_A 171 RFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTE 206 (330)
T ss_dssp EEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCE
T ss_pred EEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcE
Confidence 6665555667777777776 44444 6688888 55443
No 235
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.42 E-value=3.2e-11 Score=126.69 Aligned_cols=191 Identities=13% Similarity=0.125 Sum_probs=133.3
Q ss_pred ceEEcCCCCEEEEeeC------CeEEEEEccCCeEEEe-ecCCCccEEEEEEccCCCEEEEEeccC-------------e
Q 005254 24 PLVVSSDGSFIACACG------ESINIVDLSNASIKST-IEGGSDTITALALSPDDKLLFSSGHSR-------------E 83 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~------~~i~i~d~~~~~~~~~-l~~~~~~i~~l~~s~~~~~l~s~~~d~-------------~ 83 (706)
.++|||||++||++.+ ..|+++|+.+++.+.. +.+ .....++|+ ||+.|+.++.+. .
T Consensus 133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~ 209 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK 209 (693)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence 5799999999998653 1699999999986543 211 113578999 999999887763 4
Q ss_pred EEEEECCCCe----EEEEeec-cCCCeEEEEECCCCCEEEEec----CCCcEEEEECCCCe-EEEEeeCCCCcEEEEEEc
Q 005254 84 IRVWDLSTLK----CLRSWKG-HDGPAIGMACHPSGGLLATAG----ADRKVLVWDVDGGF-CTHYFKGHKGVVSSILFH 153 (706)
Q Consensus 84 i~iwd~~~~~----~~~~~~~-~~~~v~~~~~s~~~~~l~~~~----~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~ 153 (706)
|++|++.++. ++..... |...+..+.|||||++|+... ..+.|+++|++++. ....+..+....... ++
T Consensus 210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~ 288 (693)
T 3iuj_A 210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VD 288 (693)
T ss_dssp EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EE
T ss_pred EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Ee
Confidence 9999998764 3444444 555678999999999987643 23589999998763 344555566555554 66
Q ss_pred CCCCceEEEEEec---CCeEEEEECCCCee--EEEeecccceEEEEEEecCCCEEEEEeCCC---EEEEEeCCCCc
Q 005254 154 PDTDKSLLFSGSD---DATVRVWDLLAKKC--VATLDKHFSRVTSMAITSDGSTLISAGRDK---VVNLWDLRDYS 221 (706)
Q Consensus 154 ~~~~~~~l~~~~~---dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~w~~~~~~ 221 (706)
++++.. ++.... .+.|..+|+.++.. ...+..|...+. .|+++++.|+....++ .|++|++..+.
T Consensus 289 ~~g~~l-~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 289 NKGSTL-YLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EETTEE-EEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred ccCCEE-EEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe
Confidence 776663 333333 36899999987654 344555655554 8999998887766544 78899987543
No 236
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.39 E-value=1.3e-09 Score=102.68 Aligned_cols=223 Identities=11% Similarity=0.034 Sum_probs=149.0
Q ss_pred eEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE
Q 005254 357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 436 (706)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 436 (706)
....|.++++.++.+...++.|..||..+++... +. ....+.++. +.++++. +++ +. ..|.+||..+++....
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~--~~~dg~l-~v~-~~-~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALA--KISDSKQ-LIA-SD-DGLFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEE--EEETTEE-EEE-ET-TEEEEEETTTCCEEEE
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEE--EeCCCeE-EEE-EC-CCEEEEECCCCcEEEE
Confidence 4567777677788888788999999998876542 22 234677776 6777765 443 33 4599999988875443
Q ss_pred EeC----CCcCeEEEEEecCCCeEEEEecCC----CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCE
Q 005254 437 GTG----HMGAVGAVAFSKKLQNFLVSGSSD----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 508 (706)
Q Consensus 437 ~~~----~~~~v~~~~~~~~~~~~l~~~~~d----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 508 (706)
... ....+..++++|+|+ ++++...+ +...+|.+..+ ..............++|+||++.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~~g-----------~~~~~~~~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKG-----------KVTKLFADISIPNSICFSPDGTT 192 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETT-----------EEEEEEEEESSEEEEEECTTSCE
T ss_pred eeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEeCC-----------cEEEeeCCCcccCCeEEcCCCCE
Confidence 321 124688999999987 44443221 23444544422 11112223345678999999987
Q ss_pred EEEe-eCCCcEEEEeCC--Cc-c-----EEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc
Q 005254 509 VCTG-SQDRTACVWRLP--DL-V-----SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 579 (706)
Q Consensus 509 l~~~-~~dg~i~i~d~~--~~-~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 579 (706)
++.+ +.++.|.+|++. ++ . ....+......+..++++++|.++++...++.|.+||. +++.+..+..+..
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~ 271 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK 271 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS
T ss_pred EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC
Confidence 7655 456889999985 55 2 12222223456788999999988777766788999998 6777777776767
Q ss_pred CEEEEEEE-eCCCEEEEEeCC
Q 005254 580 SVLRASFL-TRGAQIVSCGAD 599 (706)
Q Consensus 580 ~i~~~~~s-~~~~~l~~~~~d 599 (706)
.+++++|+ ++++.|++++..
T Consensus 272 ~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 272 QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp BEEEEEEESTTSCEEEEEEBC
T ss_pred CcEEEEEecCCCCEEEEEecC
Confidence 89999999 888877655543
No 237
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.38 E-value=1.2e-10 Score=122.24 Aligned_cols=242 Identities=12% Similarity=0.092 Sum_probs=158.9
Q ss_pred CcceEEEeeeeeecCCCEEEEEeeCC----CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC-------
Q 005254 395 HSEIVLCLDTCALSSGKILIVTGSKD----NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD------- 463 (706)
Q Consensus 395 ~~~~i~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------- 463 (706)
+...+..+. ++|+++.++++.+.. ..|++||+.+++.+... ........++|+ |++. |+.++.+
T Consensus 127 ~~~~l~~~~--~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~-l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 127 GTTALDQLS--FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEG-FFYSSYDKPDGSEL 201 (693)
T ss_dssp SCCEEEEEE--ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTE-EEEEESSCCC----
T ss_pred CcEEEEEEE--ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCE-EEEEEecCcccccc
Confidence 334556665 899999855554433 46999999999866531 111123578899 9884 4444444
Q ss_pred ------CeEEEEEecCCCCCCCcccccceeEEEee---cCcceEEEEEcCCCCEEEEeeC----CCcEEEEeCCCcc-EE
Q 005254 464 ------HTIKVWSFDGLSDDAEQPMNLKAKAVVAA---HGKDINSLAVAPNDSLVCTGSQ----DRTACVWRLPDLV-SV 529 (706)
Q Consensus 464 ------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~-~~ 529 (706)
..|++|++...... ....... +......+.++|||++|+.... ++.|+++|+.++. ..
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~--------~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 273 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQED--------DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL 273 (693)
T ss_dssp ---CCCCEEEEEETTSCGGG--------CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred cccCCCcEEEEEECCCCccc--------ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence 34888887654210 1122221 2345678999999998865442 3589999997763 34
Q ss_pred EEEeecCCcEEEEEEccCCCEEEEec-CC---CcEEEEEcCCCce--EEEEeecccCEEEEEEEeCCCEEEEEeCCC---
Q 005254 530 VTFRGHKRGIWSVEFSPVDQVVITAS-GD---KTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADG--- 600 (706)
Q Consensus 530 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--- 600 (706)
..+..+....... +++++..|+..+ .+ +.|..+|+.++.. ...+..|...+. .|++++++|+....++
T Consensus 274 ~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 274 LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEE
T ss_pred EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCee
Confidence 5555566665555 666666655443 33 6799999987754 345666666665 8999999887766544
Q ss_pred CEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEECCchh
Q 005254 601 LVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSD----ALVNLWHDSTAA 653 (706)
Q Consensus 601 ~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vw~~~~~~ 653 (706)
.|++||+..+. ...+. .+.+.+..+.++++++.|+....+ +.+..||+.+++
T Consensus 351 ~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 68999987544 44444 345677888888898877655444 889999987664
No 238
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.38 E-value=1.7e-10 Score=107.92 Aligned_cols=208 Identities=11% Similarity=0.039 Sum_probs=138.5
Q ss_pred ceEEcCCCCEEEEee-C-CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec-
Q 005254 24 PLVVSSDGSFIACAC-G-ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG- 100 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~-~-~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~- 100 (706)
..+|+|+|+.|++.. . +.|..|+. +++. ..+..+...+..++++++|+++++...++.|.+|+.. ++.......
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~ 125 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRY 125 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEecc
Confidence 689999999555444 3 48999997 5553 3444466778999999999977665556789999986 553322211
Q ss_pred ---cCCCeEEEEECCCCCEEEE----ecC-------------CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceE
Q 005254 101 ---HDGPAIGMACHPSGGLLAT----AGA-------------DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL 160 (706)
Q Consensus 101 ---~~~~v~~~~~s~~~~~l~~----~~~-------------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 160 (706)
....+..++++|+|++.++ |.. .+.|..||..+++..... .......++|+|+++.
T Consensus 126 ~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~-- 201 (305)
T 3dr2_A 126 AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQT-- 201 (305)
T ss_dssp TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSE--
T ss_pred CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCE--
Confidence 1234678999999998886 332 256788887777644433 3456788999999876
Q ss_pred EEEEecC------CeEEEEECCCCeeEEE---e-ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcc
Q 005254 161 LFSGSDD------ATVRVWDLLAKKCVAT---L-DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 161 l~~~~~d------g~i~vwd~~~~~~~~~---~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 230 (706)
|+.+... +.|.+|++..+. +.. + ....+....+++.++|+ |.+++.+ .|.+|+. +++....+....
T Consensus 202 lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~ 277 (305)
T 3dr2_A 202 LYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTPG 277 (305)
T ss_dssp EEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECSS
T ss_pred EEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECCC
Confidence 4444443 789999987654 211 1 11233456788999998 5555544 4999998 466666665555
Q ss_pred eeeeEEeeCCCC
Q 005254 231 MVEAVCAIPPGS 242 (706)
Q Consensus 231 ~~~~~~~~~~~~ 242 (706)
.+..+++.+++.
T Consensus 278 ~~~~~~f~~d~~ 289 (305)
T 3dr2_A 278 TASNCTFDQAQQ 289 (305)
T ss_dssp CCCEEEECTTSC
T ss_pred ceeEEEEeCCCC
Confidence 566666665543
No 239
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.35 E-value=4.4e-10 Score=106.94 Aligned_cols=116 Identities=13% Similarity=0.036 Sum_probs=76.6
Q ss_pred CCeEEEEECCCCCEEEEec--CCCcEEEEECCCCeEEEEe-------eCCCCcEEEEEEcCCCCceEEEEEec-----CC
Q 005254 103 GPAIGMACHPSGGLLATAG--ADRKVLVWDVDGGFCTHYF-------KGHKGVVSSILFHPDTDKSLLFSGSD-----DA 168 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg 168 (706)
..+..++++|+|+.+++.. .++.+.||.+.+++.. .+ ..+...+..+++.+++. ++++... ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~--L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGI--VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSE--EEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCc--EEEEcCCCCcCCCC
Confidence 6789999999999988853 2343556665566543 22 13456899999999854 2333322 57
Q ss_pred eEEEEECCCCeeEEEeecc------cceEEEEEEecCCCEEEEEe----CCCEEEEEeCCCCc
Q 005254 169 TVRVWDLLAKKCVATLDKH------FSRVTSMAITSDGSTLISAG----RDKVVNLWDLRDYS 221 (706)
Q Consensus 169 ~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~----~dg~i~~w~~~~~~ 221 (706)
.|.+||+.+++.+..+... ...+..+++++++..++.+. .++.|.+||+.+++
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 8999999999877666432 23457888887655554443 45677777766543
No 240
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.32 E-value=3e-10 Score=108.09 Aligned_cols=196 Identities=9% Similarity=0.111 Sum_probs=131.7
Q ss_pred ceEEcCCCCEEEEee---CCeEEEEEccCCeEEE------eecCCCccEEEEEEccCCCEEEEEec-----cCeEEEEEC
Q 005254 24 PLVVSSDGSFIACAC---GESINIVDLSNASIKS------TIEGGSDTITALALSPDDKLLFSSGH-----SREIRVWDL 89 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~---~~~i~i~d~~~~~~~~------~l~~~~~~i~~l~~s~~~~~l~s~~~-----d~~i~iwd~ 89 (706)
.++++|||+++++.. ++.+.||.+.+++... ...+|-..+..++++++|+++++-.. ++.|.+||+
T Consensus 21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~ 100 (343)
T 2qe8_A 21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDT 100 (343)
T ss_dssp EEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEET
T ss_pred eEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEEC
Confidence 599999999988753 2324555544665431 11234568999999999986665433 478999999
Q ss_pred CCCeEEEEeecc------CCCeEEEEECCCCCEEE-Eec---CCCcEEEEECCCCeEEEEeeCCC---------------
Q 005254 90 STLKCLRSWKGH------DGPAIGMACHPSGGLLA-TAG---ADRKVLVWDVDGGFCTHYFKGHK--------------- 144 (706)
Q Consensus 90 ~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~-~~~---~d~~i~vw~~~~~~~~~~~~~~~--------------- 144 (706)
.+++.+..+..+ ...+..+++++++..+. +-. .++.|.+||+.+++....+.+|.
T Consensus 101 ~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~ 180 (343)
T 2qe8_A 101 LNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVP 180 (343)
T ss_dssp TTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEE
T ss_pred CCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEE
Confidence 999987776532 23568999998755554 433 57889999999887666554321
Q ss_pred --------------CcEEEEEEcCCCCceEEEEEecCC-eEEEEECC---CCe-----eEE--EeecccceEEEEEEecC
Q 005254 145 --------------GVVSSILFHPDTDKSLLFSGSDDA-TVRVWDLL---AKK-----CVA--TLDKHFSRVTSMAITSD 199 (706)
Q Consensus 145 --------------~~v~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~---~~~-----~~~--~~~~~~~~v~~~~~~~~ 199 (706)
..+..++|+|+++. |+.+...+ .+..++.. .+. ... ...++.+....++++++
T Consensus 181 ~~~~~~~g~~~~~~~~~~gia~s~dg~~--ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~ 258 (343)
T 2qe8_A 181 VQIGQPDGTVIRPHLGVNGIVLDAENEW--LYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD 258 (343)
T ss_dssp CBEECTTSCEECCCCCEEEEEECTTSCE--EEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT
T ss_pred EEeccCCCceeceecccceeEeccCCCE--EEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC
Confidence 23688999998875 66655554 45444431 110 000 11134445667999999
Q ss_pred CCEEEEEeCCCEEEEEeCCCCc
Q 005254 200 GSTLISAGRDKVVNLWDLRDYS 221 (706)
Q Consensus 200 ~~~l~~~~~dg~i~~w~~~~~~ 221 (706)
|.++++...++.|.+||..+++
T Consensus 259 G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 259 HNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp CCEEEEEGGGTEEEEEETTTTE
T ss_pred CCEEEEccCCCeEEEEECCCCC
Confidence 9988888888999999985554
No 241
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.31 E-value=2.2e-08 Score=91.48 Aligned_cols=249 Identities=10% Similarity=0.075 Sum_probs=156.9
Q ss_pred EEEEecCCcEEEEeCCCceee-----EeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcC
Q 005254 369 LAVATNIEQVQVYDLSSMSCS-----YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 443 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 443 (706)
|..+.. +.|+.+++...... ..+......+.++. +.++++.++++-..++.|..++................
T Consensus 4 l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~--~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 4 LLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLA--FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEE--EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred EEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEE--EecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 344433 46777777654321 11222223445665 77877886777777889999998876544444333457
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC---CCcEEE
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ---DRTACV 520 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i 520 (706)
...+++++++..+.++....+.|.+++++... ..............++++|++..|..+.. .+.|..
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~----------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~ 150 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ----------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET 150 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCS----------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCC----------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence 88999999776577777778899999886431 11111112245789999997666655553 367888
Q ss_pred EeCCCccEEEEEeecCCcEEEEEEccCCCEEEE-ecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEe-C
Q 005254 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG-A 598 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~ 598 (706)
+++..................+++++++..|+. -...+.|.++|+........+. .......++. ++..|..+. .
T Consensus 151 ~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~--d~~~lyva~~~ 227 (267)
T 1npe_A 151 SHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTS--YGKNLYYTDWK 227 (267)
T ss_dssp EETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEE--ETTEEEEEETT
T ss_pred EecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-CCCCceEEEE--eCCEEEEEECC
Confidence 887543322222223346789999998766654 4456789999987544333333 2233455654 355665555 5
Q ss_pred CCCEEEEECCCCeEEEEeccCC-CcEEEEEEcCCCC
Q 005254 599 DGLVKLWTVRTGECIATYDKHE-DKIWALAVGKKTE 633 (706)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~ 633 (706)
.+.|.++|..+++.+..+.... .....+++.|++.
T Consensus 228 ~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 228 TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 5899999999999988886433 2456777877764
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.30 E-value=8.8e-13 Score=126.41 Aligned_cols=192 Identities=13% Similarity=0.058 Sum_probs=113.9
Q ss_pred CCCEEEEeeC-CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCC-eE-
Q 005254 30 DGSFIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP-AI- 106 (706)
Q Consensus 30 dg~~l~~~~~-~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~- 106 (706)
++..+++++. +.|+.||..+|+.+..++. ..+.+..+..++..+++++.|+.|+.||.++|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 5667777765 4899999999999877775 45556666778888888889999999999999887766543211 10
Q ss_pred EEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec
Q 005254 107 GMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK 186 (706)
Q Consensus 107 ~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 186 (706)
+..+. ++..+++++.++.|+.||..+|+.+..+..+. ...++|+++. +++++.++.|+.||..+++.+..+..
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~--v~~~~~dg~v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSL--LYLGRTEYTITMYDTKTRELRWNATY 158 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCE--EEEEecCCEEEEEECCCCCEEEeEec
Confidence 00111 35577888889999999999999888776543 2345665554 88889999999999999987766543
Q ss_pred ccceEEEEEEecCC---CEEEEEeCCCEEEEEeCCCCcceeeecCccee
Q 005254 187 HFSRVTSMAITSDG---STLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232 (706)
Q Consensus 187 ~~~~v~~~~~~~~~---~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~ 232 (706)
+. .....+..+. ..+++++.+|.++.||.++++.+.......++
T Consensus 159 ~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv 205 (369)
T 2hz6_A 159 FD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPV 205 (369)
T ss_dssp EE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCE
T ss_pred cc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCce
Confidence 21 2223334432 56888889999999999999887776654443
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.28 E-value=8.6e-09 Score=96.89 Aligned_cols=220 Identities=10% Similarity=0.072 Sum_probs=150.4
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCCc----eEEEEEe-------CCCcCeEEEEEecCCCeEEEEecCC------CeEEEEE
Q 005254 408 SSGKILIVTGSKDNSVRLWDSESR----CCVGVGT-------GHMGAVGAVAFSKKLQNFLVSGSSD------HTIKVWS 470 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~i~~ 470 (706)
.+++.+++.+..+++|.++|+.+. +....+. ........+...|+| +++++..+ +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 678888888999999999998755 5665552 112245667888998 55565554 7899999
Q ss_pred ecCCCCCCCcccccceeEEEeec--C-cceEEEEEcCCCCEEEEee-------------------CCCcEEEEeCCCccE
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAH--G-KDINSLAVAPNDSLVCTGS-------------------QDRTACVWRLPDLVS 528 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~--~-~~i~~~~~s~~~~~l~~~~-------------------~dg~i~i~d~~~~~~ 528 (706)
..+.+ ........ . .--..+.|+|+++.+++.. .+.+|.+||+.+++.
T Consensus 171 ~~T~~----------v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~ 240 (462)
T 2ece_A 171 HYSFE----------PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR 240 (462)
T ss_dssp TTTCC----------EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred CCCCe----------EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence 87653 22222211 1 1123477899999888884 368899999999888
Q ss_pred EEEEeec-C-CcEEEEEE--ccCCCEEEEec------CCCcEEEEEcCCCce--EEEE--eec----------------c
Q 005254 529 VVTFRGH-K-RGIWSVEF--SPVDQVVITAS------GDKTIKIWSISDGSC--LKTF--EGH----------------T 578 (706)
Q Consensus 529 ~~~~~~~-~-~~v~~~~~--s~~~~~l~~~~------~dg~i~iwd~~~~~~--~~~~--~~~----------------~ 578 (706)
+.++... . .....+.| +|+++++++++ .+++|.+|....++. .+.+ ... .
T Consensus 241 ~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~ 320 (462)
T 2ece_A 241 IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVP 320 (462)
T ss_dssp EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEEC
T ss_pred eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCC
Confidence 8877652 1 23455656 99999988776 456888877655432 1111 110 1
Q ss_pred cCEEEEEEEeCCCEEEEEeC-CCCEEEEECC---CCeEEEEeccCC--------------CcEEEEEEcCCCCEEEEEe
Q 005254 579 SSVLRASFLTRGAQIVSCGA-DGLVKLWTVR---TGECIATYDKHE--------------DKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 579 ~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~ 639 (706)
.....+.+|+||++|.++.. .+.|.+||+. +.+.+..+.... +.-..+.++|||++|+++.
T Consensus 321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 34678899999999977765 5799999986 345666654321 1247899999999999887
No 244
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.27 E-value=5.1e-09 Score=98.37 Aligned_cols=201 Identities=16% Similarity=0.158 Sum_probs=140.5
Q ss_pred EEc--CCCCEEEEeeCC--eEEEEEccCC----eEEEeec-------CCCccEEEEEEccCCCEEEEEecc------CeE
Q 005254 26 VVS--SDGSFIACACGE--SINIVDLSNA----SIKSTIE-------GGSDTITALALSPDDKLLFSSGHS------REI 84 (706)
Q Consensus 26 ~~s--~dg~~l~~~~~~--~i~i~d~~~~----~~~~~l~-------~~~~~i~~l~~s~~~~~l~s~~~d------~~i 84 (706)
+++ +++++|++++.. .|+|+|+.+. +....++ .....-..+..+|+| +++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 347 899999998875 7999998765 6666663 112244678889999 66666444 789
Q ss_pred EEEECCCCeEEEEeeccCC---CeEEEEECCCCCEEEEec-------------------CCCcEEEEECCCCeEEEEeeC
Q 005254 85 RVWDLSTLKCLRSWKGHDG---PAIGMACHPSGGLLATAG-------------------ADRKVLVWDVDGGFCTHYFKG 142 (706)
Q Consensus 85 ~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~-------------------~d~~i~vw~~~~~~~~~~~~~ 142 (706)
.+.|.++++.+.++..... --..+.|+|+++.+++.. .+.+|.+||+.+++.+..+..
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 9999999999999873322 233588899999988874 368899999999988888774
Q ss_pred C-C-CcEEEEEE--cCCCCceEEEEEe-----cCCeEEEEECCCCeeE--EE--eecc----------------cceEEE
Q 005254 143 H-K-GVVSSILF--HPDTDKSLLFSGS-----DDATVRVWDLLAKKCV--AT--LDKH----------------FSRVTS 193 (706)
Q Consensus 143 ~-~-~~v~~~~~--~~~~~~~~l~~~~-----~dg~i~vwd~~~~~~~--~~--~~~~----------------~~~v~~ 193 (706)
. . .....+.| +|+++. .+++.. .+++|.+|..+.++.. +. +... ......
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~-aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLM-GFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCE-EEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred CCCCCccceeEeeECCCCCE-EEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 3 1 34556666 998776 233333 5678888776554321 11 1110 134678
Q ss_pred EEEecCCCEEEEEeC-CCEEEEEeCCCC---cceeeecC
Q 005254 194 MAITSDGSTLISAGR-DKVVNLWDLRDY---SCKLTVPT 228 (706)
Q Consensus 194 ~~~~~~~~~l~~~~~-dg~i~~w~~~~~---~~~~~~~~ 228 (706)
+.+++||++|+++.. .+.|.+||+.+. +.+..++.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t 364 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL 364 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence 999999999998875 689999998632 34444444
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.27 E-value=3e-12 Score=122.73 Aligned_cols=203 Identities=10% Similarity=0.020 Sum_probs=115.4
Q ss_pred CCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeE
Q 005254 409 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488 (706)
Q Consensus 409 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 488 (706)
+++. +++++.||.|+.||..+++.+..+.. +.+.+..+..++. ++++++.|+.|+.||..+++...
T Consensus 8 ~~~~-v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w---------- 73 (369)
T 2hz6_A 8 PETL-LFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLT---------- 73 (369)
T ss_dssp CTTE-EEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSE----------
T ss_pred eCCE-EEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceee----------
Confidence 3555 88899999999999999999988776 4555555555654 67777899999999987654211
Q ss_pred EEeec-CcceE-EEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 489 VVAAH-GKDIN-SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 489 ~~~~~-~~~i~-~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
....+ ...+. +..+. ++..+++++.++.++.||..+++.+..+..+. ...++|++..+++++.|+.|+.||..
T Consensus 74 ~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~ 148 (369)
T 2hz6_A 74 KLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTK 148 (369)
T ss_dssp ECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSS
T ss_pred eeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECC
Confidence 11000 00000 00111 34567788889999999999999888776553 24566788899999999999999999
Q ss_pred CCceEEEEeecccCEEEEEEEeCC---CEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEE-EEEEcCCCC
Q 005254 567 DGSCLKTFEGHTSSVLRASFLTRG---AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW-ALAVGKKTE 633 (706)
Q Consensus 567 ~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~ 633 (706)
+++.+..+..+. .....+..+. ..+++++.||.|+.||..+|+.+...+.. .++. ...+++++.
T Consensus 149 tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 149 TRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA-SPVVAFYVWQREGL 216 (369)
T ss_dssp SSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS-SCEEEEEECTTSSC
T ss_pred CCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC-CceEEEEEecCCce
Confidence 998876654321 1222333332 56778889999999999999998877643 3443 344555554
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.25 E-value=6.7e-08 Score=88.18 Aligned_cols=185 Identities=14% Similarity=0.104 Sum_probs=119.2
Q ss_pred CCEEEEeeCCeEEEEEccCCeEE-----EeecCCCccEEEEEEccCCCEEEEEe-ccCeEEEEECCCCeEEEEeeccCCC
Q 005254 31 GSFIACACGESINIVDLSNASIK-----STIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLSTLKCLRSWKGHDGP 104 (706)
Q Consensus 31 g~~l~~~~~~~i~i~d~~~~~~~-----~~l~~~~~~i~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 104 (706)
|.+|.++..+.|+.+++...... ..+......+..+++++++..|..+. .++.|..++..+......+......
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 46777777778999998765421 12222234678999999877666554 4789999999766544333333357
Q ss_pred eEEEEECCCCCEEEEe-cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec---CCeEEEEECCCCee
Q 005254 105 AIGMACHPSGGLLATA-GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD---DATVRVWDLLAKKC 180 (706)
Q Consensus 105 v~~~~~s~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~ 180 (706)
...++++|++..|..+ ...+.|.+++.+.................+++.|++.. ++.+.. .+.|..+++....
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~--lyv~~~~~~~~~I~~~~~dg~~- 157 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGN--LYWTDWNRDNPKIETSHMDGTN- 157 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTE--EEEEECCSSSCEEEEEETTSCC-
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCE--EEEEECCCCCcEEEEEecCCCC-
Confidence 7899999987666655 45678999998754332222222356789999997655 333332 4688888875432
Q ss_pred EEEe-ecccceEEEEEEecCCCEEEEEeC-CCEEEEEeCC
Q 005254 181 VATL-DKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLR 218 (706)
Q Consensus 181 ~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~ 218 (706)
...+ .........+++++++..|+.+.. .+.|.+++..
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~ 197 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence 2222 223345788899988776666553 4567666654
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=9.8e-09 Score=106.44 Aligned_cols=257 Identities=11% Similarity=0.078 Sum_probs=159.0
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcc----eEEEeeeeeecCCCEEEEEeeC------CCcEEEEeCCCceEEEE
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSE----IVLCLDTCALSSGKILIVTGSK------DNSVRLWDSESRCCVGV 436 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~ 436 (706)
..+++++.++.+..+|..+++.......... .+.+-. .. .+.. ++++.. +|.|..+|..+++.+..
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P--~v-~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAP--RV-VKGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCC--EE-ETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCC--EE-ECCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 3455566667777777777777665544210 111000 11 1334 444433 58999999999999887
Q ss_pred EeCCCc-------------------------------CeEEEEEecCCCeEEEEecCCC-------------------eE
Q 005254 437 GTGHMG-------------------------------AVGAVAFSKKLQNFLVSGSSDH-------------------TI 466 (706)
Q Consensus 437 ~~~~~~-------------------------------~v~~~~~~~~~~~~l~~~~~d~-------------------~i 466 (706)
+..... ....+++.++.. +++.+..++ .|
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v 272 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSI 272 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 653110 112367777765 666666655 37
Q ss_pred EEEEecCCCCCCCcccccceeEEEee--cC-------cceEEEEEcCCCC---EEEEeeCCCcEEEEeCCCccEEEEEee
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAA--HG-------KDINSLAVAPNDS---LVCTGSQDRTACVWRLPDLVSVVTFRG 534 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~ 534 (706)
..+|..+++ ....... |. .+.....+..+|+ .++.++.+|.++++|..+++.+...+.
T Consensus 273 ~AlD~~tG~----------~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 342 (668)
T 1kv9_A 273 LAIRPDTGK----------LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKF 342 (668)
T ss_dssp EEECTTTCC----------EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred EEEcCCCCc----------eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccc
Confidence 777777654 2222221 11 2222233334665 788999999999999999998854432
Q ss_pred cCC------------cE------------------------EEEEEccCCCEEEEe------------------------
Q 005254 535 HKR------------GI------------------------WSVEFSPVDQVVITA------------------------ 554 (706)
Q Consensus 535 ~~~------------~v------------------------~~~~~s~~~~~l~~~------------------------ 554 (706)
... ++ ..++++|+...++..
T Consensus 343 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g 422 (668)
T 1kv9_A 343 GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTA 422 (668)
T ss_dssp SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCS
T ss_pred cccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccC
Confidence 110 00 125777776665541
Q ss_pred ------------cCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCc
Q 005254 555 ------------SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 622 (706)
Q Consensus 555 ------------~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 622 (706)
..+|.|..||+.+++.+-+...+ .+.....+...+.++++++.||.++.||..+|+.+..++...+.
T Consensus 423 ~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~ 501 (668)
T 1kv9_A 423 AGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGI 501 (668)
T ss_dssp SCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred ccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCc
Confidence 13488999999999998777643 33444556667889999999999999999999999888754321
Q ss_pred E-EEEEEcCCCC-EEEEEe
Q 005254 623 I-WALAVGKKTE-MFATGG 639 (706)
Q Consensus 623 v-~~~~~s~~~~-~l~~~~ 639 (706)
. .-+.+..+|+ +++++.
T Consensus 502 ~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 502 VAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CSCCEEEEETTEEEEEEEE
T ss_pred ccCceEEEECCEEEEEEEe
Confidence 1 2233345666 444443
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.24 E-value=3.4e-09 Score=93.54 Aligned_cols=188 Identities=10% Similarity=0.039 Sum_probs=135.5
Q ss_pred ceEEcCCCCEEEEee---CCeEEEEEccCCeEEEeecCCCc-cEEEEEEccCCCEEEEE-eccCeEEEEECCCCeEEEEe
Q 005254 24 PLVVSSDGSFIACAC---GESINIVDLSNASIKSTIEGGSD-TITALALSPDDKLLFSS-GHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~---~~~i~i~d~~~~~~~~~l~~~~~-~i~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~ 98 (706)
.++|+|||.+.++.+ ++.|.++|+.+++.+..+.-... ....++++ ++.|..+ -.++.+.++|.++++.+.++
T Consensus 25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 25 GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence 499999975444433 25899999999999887653221 22345554 5556554 45889999999999999998
Q ss_pred ecc-CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCC-----CcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 99 KGH-DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHK-----GVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 99 ~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
... .. ...+++|+++|+++..++.|.++|.++.+.+..+.-.. ..+..+.|. ++ . +.+....++.|.+
T Consensus 103 ~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~-lyvn~~~~~~V~v 176 (266)
T 2iwa_A 103 THQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-E-VWANIWQTDCIAR 176 (266)
T ss_dssp ECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-E-EEEEETTSSEEEE
T ss_pred ECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-E-EEEecCCCCeEEE
Confidence 743 22 24466788877777778899999999998887766321 236788888 54 3 3455556889999
Q ss_pred EECCCCeeEEEeeccc-------------ceEEEEEEecCCCEEEEEe-CCCEEEEEeCCC
Q 005254 173 WDLLAKKCVATLDKHF-------------SRVTSMAITSDGSTLISAG-RDKVVNLWDLRD 219 (706)
Q Consensus 173 wd~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~ 219 (706)
.|..+++.+..+.-.. .....++|+|+++.+++++ ..+.+.+.++..
T Consensus 177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 9999999988885321 2568999999987666555 678888888754
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.23 E-value=1.3e-09 Score=106.27 Aligned_cols=232 Identities=11% Similarity=0.078 Sum_probs=159.1
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC-CcCeEEEEE-e-cCCCeEEEEe------------------cCCCeE
Q 005254 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAF-S-KKLQNFLVSG------------------SSDHTI 466 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~~l~~~------------------~~d~~i 466 (706)
++++++++....+.+|.+.|+.+.+....+.-. ......+++ + |+++ +++++ -.++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccccccccCceE
Confidence 467787777777888999999999988855433 356788887 5 8888 45554 234678
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC------------------------------
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR------------------------------ 516 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------------------------------ 516 (706)
.+.|..+.+ ......-.. ....++++|+|+++++.+.+.
T Consensus 178 tvID~~t~~----------v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 178 TAVDADKWE----------VAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp EEEETTTTE----------EEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEECCCCe----------EEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 888876432 222222222 456788999999999888553
Q ss_pred --------cEEEEeCCC--ccE-EEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcCCCc------------eEE
Q 005254 517 --------TACVWRLPD--LVS-VVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGS------------CLK 572 (706)
Q Consensus 517 --------~i~i~d~~~--~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~ 572 (706)
.|.+.|..+ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ ...
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence 366667666 434 444442 23456799999999876655 57899999998653 233
Q ss_pred EEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC----------CeEEEEeccCCCcE-----EEEEEcCCCCEEEE
Q 005254 573 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT----------GECIATYDKHEDKI-----WALAVGKKTEMFAT 637 (706)
Q Consensus 573 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~ 637 (706)
+.. -......++|+++|...++.--|+.|.+||+.+ .+.+..+..|..+- ..+.++|||++|++
T Consensus 326 ~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 326 EPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp CCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred EcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence 333 334678899999994445566789999999987 56788887765532 12356899999998
Q ss_pred EeC---CCcE----------EEEECCchh
Q 005254 638 GGS---DALV----------NLWHDSTAA 653 (706)
Q Consensus 638 ~~~---dg~i----------~vw~~~~~~ 653 (706)
+.. |+.+ .++|+..++
T Consensus 405 ~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 405 LSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 654 4421 778886554
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=1.9e-08 Score=104.30 Aligned_cols=370 Identities=11% Similarity=0.094 Sum_probs=201.5
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCCcc----------E-EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGSDT----------I-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~----------i-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
++.+++....+.|+-+|..+|+.+-..+..... + ..+++ ++..++.++.|+.|..+|.++|+.+.++
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 454444444558999999999988666533211 0 11223 3567888888999999999999999887
Q ss_pred eccCC-CeEEEEECC--CCCEEEEecC------CCcEEEEECCCCeEEEEeeCCC---C---------------------
Q 005254 99 KGHDG-PAIGMACHP--SGGLLATAGA------DRKVLVWDVDGGFCTHYFKGHK---G--------------------- 145 (706)
Q Consensus 99 ~~~~~-~v~~~~~s~--~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~---~--------------------- 145 (706)
..... ....+..+| .+..++++.. ++.|..+|..+|+.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 65211 000111112 1345555543 5899999999999988775311 0
Q ss_pred -------cEEEEEEcCCCCceEEEEEecCC-------------------eEEEEECCCCeeEEEeec--cc-------ce
Q 005254 146 -------VVSSILFHPDTDKSLLFSGSDDA-------------------TVRVWDLLAKKCVATLDK--HF-------SR 190 (706)
Q Consensus 146 -------~v~~~~~~~~~~~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~--~~-------~~ 190 (706)
....+++.|+.+. ++.+..++ .|..+|..+|+.+..++. |. .+
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~--vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDL--LYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHCEECCCCSCEEEETTTTE--EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeCCCCccccceEEcCCCCE--EEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 0123677776554 66666555 499999999999887754 21 23
Q ss_pred EEEEEEecCCC---EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeC-CCCCcccccccccchhhhccccccceE
Q 005254 191 VTSMAITSDGS---TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP-PGSAFDSFLSSYNQQTIKKKRRSLEIH 266 (706)
Q Consensus 191 v~~~~~~~~~~---~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (706)
.....+..+|+ .++.++.+|.++++|..+++.+...+.........+.+ .+...
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~---------------------- 359 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPV---------------------- 359 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEE----------------------
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcc----------------------
Confidence 33333444665 68889999999999999999886654432110100100 00000
Q ss_pred EEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEe
Q 005254 267 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS 346 (706)
Q Consensus 267 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (706)
...... + .. .....+............++.|+...+++...+-.... ...... ..
T Consensus 360 --~~~~~~----~--~~---------~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~-~~~~~~---~~---- 414 (668)
T 1kv9_A 360 --EAPGVR----Y--EK---------EPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVY-RNEGKD---FV---- 414 (668)
T ss_dssp --ECTTTT----C--SS---------SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE-CCCGGG---CC----
T ss_pred --cccccc----c--cC---------CeeEECCCCccccCCCcceECCCCCEEEEeccccceEe-eeeccc---cc----
Confidence 000000 0 00 00000000011112234566676666665544332222 111000 00
Q ss_pred eEecccCceeeEeeEeCCCCcEEE-EEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEE
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLA-VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (706)
..........+ .....+ ....+|.+..||+.+++............ ... ....+.. ++.++.|+.++.
T Consensus 415 ----~~~~~~~g~~~---~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~-~~~--~~t~gg~-vf~g~~dg~l~a 483 (668)
T 1kv9_A 415 ----TRKAFNTAAGF---ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWN-GGT--LSTAGNL-VFQGTAAGQMHA 483 (668)
T ss_dssp ----CCSSCCCSSCG---GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCC-CCE--EEETTTE-EEEECTTSEEEE
T ss_pred ----cccccccCccc---cccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCc-Cce--eEeCCCE-EEEECCcccchh
Confidence 00000000000 000011 12234789999999999877665433221 111 3345565 777899999999
Q ss_pred EeCCCceEEEEEeCCCcCe-EEEEEecCCCeEEEEec
Q 005254 426 WDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 426 ~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~ 461 (706)
||..+++.+..+....... ..+.+..+|+.+++.+.
T Consensus 484 ~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 484 YSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred hhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 9999999998877553222 23455566665555544
No 251
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.15 E-value=8.4e-08 Score=96.85 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=90.5
Q ss_pred CCC---CEEEEeeCCCcEEEEeCCCccEEEEEeecC-------------CcE--------------------------EE
Q 005254 504 PND---SLVCTGSQDRTACVWRLPDLVSVVTFRGHK-------------RGI--------------------------WS 541 (706)
Q Consensus 504 ~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~v--------------------------~~ 541 (706)
.+| ..++.++.+|.++++|..+++.+....... .++ ..
T Consensus 318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 397 (599)
T 1w6s_A 318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGH 397 (599)
T ss_dssp TTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCC
Confidence 467 567788899999999999999887665211 111 13
Q ss_pred EEEccCCCEEEEe---------------------------------c------CCCcEEEEEcCCCceEEEEeecccCEE
Q 005254 542 VEFSPVDQVVITA---------------------------------S------GDKTIKIWSISDGSCLKTFEGHTSSVL 582 (706)
Q Consensus 542 ~~~s~~~~~l~~~---------------------------------~------~dg~i~iwd~~~~~~~~~~~~~~~~i~ 582 (706)
++++|+..++++. + .+|.|..||+.+++.+-+... ..+..
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~ 476 (599)
T 1w6s_A 398 DSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVW 476 (599)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCC
T ss_pred ccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCcc
Confidence 5667766655442 1 357899999999998877652 22222
Q ss_pred EEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCc-EEEEEEcCCCC-EEEEE
Q 005254 583 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK-IWALAVGKKTE-MFATG 638 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~-~l~~~ 638 (706)
.-.+...+..++.++.||.++.||.++|+.+..++..... ..-+.+..+|+ |+++.
T Consensus 477 ~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 477 GGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp SBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence 2233446778888999999999999999999888743322 12345556776 45443
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.15 E-value=3.8e-08 Score=86.85 Aligned_cols=206 Identities=12% Similarity=0.044 Sum_probs=143.9
Q ss_pred CeEEEeecCCC-ccEEEEEEccCCCEEEEEec--cCeEEEEECCCCeEEEEeeccCC-CeEEEEECCCCCEEEEe-cCCC
Q 005254 50 ASIKSTIEGGS-DTITALALSPDDKLLFSSGH--SREIRVWDLSTLKCLRSWKGHDG-PAIGMACHPSGGLLATA-GADR 124 (706)
Q Consensus 50 ~~~~~~l~~~~-~~i~~l~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~-~~d~ 124 (706)
.+.+.++.... .....++|++|+.+.++.+. ++.|.+.|.++++.+..+.-... ....+++. ++.|..+ -.++
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 34556664222 24689999999755555443 67999999999999998763222 22345555 4455554 4678
Q ss_pred cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeeccc-----ceEEEEEEecC
Q 005254 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-----SRVTSMAITSD 199 (706)
Q Consensus 125 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~ 199 (706)
.+.++|..+.+.+..+...... ...+++|++. ++.+..++.|.++|..+.+.+..+.-.. ..+..+.|. +
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~--l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d 161 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKI--LYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N 161 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSS--CCEEEECSSS--EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCE--EEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence 9999999999999888633122 2345667776 4455568899999999998888775322 236788888 6
Q ss_pred CCEEEEEeCCCEEEEEeCCCCcceeeecCc--------------ceeeeEEeeCCCCCcccccccccchhhhccccccce
Q 005254 200 GSTLISAGRDKVVNLWDLRDYSCKLTVPTY--------------EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI 265 (706)
Q Consensus 200 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (706)
|...+....++.|.+.|.++++.+..+... .....+++.+++. .
T Consensus 162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~----------------------~ 219 (266)
T 2iwa_A 162 GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK----------------------R 219 (266)
T ss_dssp TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT----------------------E
T ss_pred CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC----------------------E
Confidence 754444446789999999999998888764 2346778887764 3
Q ss_pred EEEEecCCCeEEEEECCCC
Q 005254 266 HFITVGERGIVRMWNADSA 284 (706)
Q Consensus 266 ~~~~~~~~~~i~~~~~~~~ 284 (706)
.++++...+.+...++...
T Consensus 220 lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 220 IFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCCeEEEEEEecc
Confidence 6788888899988886543
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.13 E-value=1e-07 Score=96.62 Aligned_cols=252 Identities=12% Similarity=0.086 Sum_probs=152.6
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcc----eEEEeeeeeecCCCEEEEEeeC------CCcEEEEeCCCceEEEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSE----IVLCLDTCALSSGKILIVTGSK------DNSVRLWDSESRCCVGVG 437 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~ 437 (706)
.+++++.++.+..+|..+++.......... .+.+- ....+.. +++++. ++.|..+|..+++.+..+
T Consensus 117 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~---P~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQA---PFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC---CEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccC---CEEECCE-EEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 455555667777777777776655442210 11110 0012344 444444 789999999999988776
Q ss_pred eCCCcC--------------------------------------eEEEEEecCCCeEEEEecCC----------------
Q 005254 438 TGHMGA--------------------------------------VGAVAFSKKLQNFLVSGSSD---------------- 463 (706)
Q Consensus 438 ~~~~~~--------------------------------------v~~~~~~~~~~~~l~~~~~d---------------- 463 (706)
...... ...+++.++.. .++.+..+
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCCCceeE
Confidence 532211 01345666544 44444321
Q ss_pred CeEEEEEecCCCCCCCcccccceeEEEee--c--------CcceEEEEEcCCCC---EEEEeeCCCcEEEEeCCCccEEE
Q 005254 464 HTIKVWSFDGLSDDAEQPMNLKAKAVVAA--H--------GKDINSLAVAPNDS---LVCTGSQDRTACVWRLPDLVSVV 530 (706)
Q Consensus 464 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~ 530 (706)
+.|..+|..+++ ....... | ..++ -+....+|+ .++.++.+|.++++|..+++.+.
T Consensus 272 ~~v~Ald~~tG~----------~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w 340 (571)
T 2ad6_A 272 MTIWGRDLDTGM----------AKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV 340 (571)
T ss_dssp TEEEEEETTTCC----------EEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCc----------EEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe
Confidence 257777776653 2222211 1 1111 122334674 67788899999999999999887
Q ss_pred EEeecC-------------CcE--------------------------EEEEEccCCCEEEEec----------------
Q 005254 531 TFRGHK-------------RGI--------------------------WSVEFSPVDQVVITAS---------------- 555 (706)
Q Consensus 531 ~~~~~~-------------~~v--------------------------~~~~~s~~~~~l~~~~---------------- 555 (706)
..+... .++ ..++++|+..++++..
T Consensus 341 ~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 420 (571)
T 2ad6_A 341 AEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRA 420 (571)
T ss_dssp EEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred eecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccccccccc
Confidence 765321 111 2357888777776643
Q ss_pred ---------------------CCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE
Q 005254 556 ---------------------GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614 (706)
Q Consensus 556 ---------------------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 614 (706)
.+|.|..||+.+++.+.++... ..+....+...+..++.++.||.|+.||..+|+.+.
T Consensus 421 g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 421 GQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp TSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence 3578999999999988777632 333333445567788889999999999999999998
Q ss_pred EeccCCCc-EEEEEEcCCCCEEE
Q 005254 615 TYDKHEDK-IWALAVGKKTEMFA 636 (706)
Q Consensus 615 ~~~~~~~~-v~~~~~s~~~~~l~ 636 (706)
.++..... -..+.+..+|+.++
T Consensus 500 ~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 500 NFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEECSSCCCSCCEEEEETTEEEE
T ss_pred EEeCCCCcEeeeEEEEECCEEEE
Confidence 88743221 12233556776444
No 254
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.12 E-value=3.4e-07 Score=92.44 Aligned_cols=371 Identities=12% Similarity=0.051 Sum_probs=198.6
Q ss_pred CCCEEEEee-CCeEEEEEc-cCCeEEEeecCCCcc-----------EEEEEEccCCCE----EEEEeccCeEEEEECCCC
Q 005254 30 DGSFIACAC-GESINIVDL-SNASIKSTIEGGSDT-----------ITALALSPDDKL----LFSSGHSREIRVWDLSTL 92 (706)
Q Consensus 30 dg~~l~~~~-~~~i~i~d~-~~~~~~~~l~~~~~~-----------i~~l~~s~~~~~----l~s~~~d~~i~iwd~~~~ 92 (706)
++.+++... .+.|+-+|. .+|+.+-..+..... -..++++|.+.. |+.++.|+.|.-+|.++|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 444444443 468999999 899988555432210 123566554444 788888999999999999
Q ss_pred eEEEEeeccCC----CeEE-EEECCCCCEEEEec------CCCcEEEEECCCCeEEEEeeCCCCc---------------
Q 005254 93 KCLRSWKGHDG----PAIG-MACHPSGGLLATAG------ADRKVLVWDVDGGFCTHYFKGHKGV--------------- 146 (706)
Q Consensus 93 ~~~~~~~~~~~----~v~~-~~~s~~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~~~--------------- 146 (706)
+.+........ .+.+ -.+. ++ .+++++ .++.|+.+|.++|+.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 99887653220 1111 1111 34 555554 3799999999999998776633211
Q ss_pred ----------------------E-EEEEEcCCCCceEEEEEecC----------------CeEEEEECCCCeeEEEeecc
Q 005254 147 ----------------------V-SSILFHPDTDKSLLFSGSDD----------------ATVRVWDLLAKKCVATLDKH 187 (706)
Q Consensus 147 ----------------------v-~~~~~~~~~~~~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~ 187 (706)
+ ..+++.++... ++.+..+ +.|..+|..+|+.+..++..
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~--vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNL--IYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTE--EEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCE--EEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 0 12345555444 5555443 47999999999998776542
Q ss_pred c----------ceEEEEEEe-cCC---CEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEE-ee-CCCCCcccccccc
Q 005254 188 F----------SRVTSMAIT-SDG---STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC-AI-PPGSAFDSFLSSY 251 (706)
Q Consensus 188 ~----------~~v~~~~~~-~~~---~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 251 (706)
. .++. +... .+| ..++.++.+|.++++|.++++.+...+....+.-.. .. +.+....... .
T Consensus 298 ~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~--~ 374 (599)
T 1w6s_A 298 PHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPE--Y 374 (599)
T ss_dssp TTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGG--G
T ss_pred CCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccc--c
Confidence 2 1121 2222 467 467778899999999999999887665432110000 00 0010000000 0
Q ss_pred cchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEE
Q 005254 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (706)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (706)
.... .......+.-..........++.|+.+.+++...+......
T Consensus 375 ------~~~~-----------------------------~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~ 419 (599)
T 1w6s_A 375 ------GTRM-----------------------------DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWE 419 (599)
T ss_dssp ------CCCT-----------------------------TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred ------CCCC-----------------------------CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeee
Confidence 0000 00000000111122334456777877777666554332221
Q ss_pred EeeeccccceeeEEeeEecccCceeeEe---eEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeec
Q 005254 332 TTVEVPEKKMELILSKRLVGYNEEILDL---KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS 408 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 408 (706)
...... ......... .+..+.+. -......|.+..||+.+++............... ...
T Consensus 420 -~~~~~~------------~~g~~~~g~~~~~~~~p~~~-~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~---~~t 482 (599)
T 1w6s_A 420 -PFMLPY------------KAGQFFVGATLNMYPGPKGD-RQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGT---MAT 482 (599)
T ss_dssp -ECCCCC------------CTTSCCCCEEEEEEECTTSB-TTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBC---EEE
T ss_pred -cccccc------------cCCcceecccceeccCCcCC-cccCCCcCeEEEEECCCCCEEeEecCCCCccCcc---eEe
Confidence 111000 000000000 00000000 0000034789999999998876664221111010 223
Q ss_pred CCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe-EEEEEecCCCeEEEEe
Q 005254 409 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSG 460 (706)
Q Consensus 409 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~ 460 (706)
.+.. ++.++.|+.++.||.++++.+..++.....+ .-+.+..+|+.++++.
T Consensus 483 agg~-vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 483 AGDL-VFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp TTTE-EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred cCCE-EEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence 4555 6668999999999999999998876543322 2356667777565544
No 255
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.11 E-value=3.3e-07 Score=92.93 Aligned_cols=134 Identities=10% Similarity=0.120 Sum_probs=92.0
Q ss_pred CCCC---EEEEeeCCCcEEEEeCCCccEEEEEeecC-------------CcE----------------------------
Q 005254 504 PNDS---LVCTGSQDRTACVWRLPDLVSVVTFRGHK-------------RGI---------------------------- 539 (706)
Q Consensus 504 ~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~v---------------------------- 539 (706)
.+|+ .++.++.+|.++++|..+++.+..+.... .++
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 4674 78889999999999999999887665432 000
Q ss_pred ----EEEEEccCCCEEEEec---------------------------------CCCcEEEEEcCCCceEEEEeecccCEE
Q 005254 540 ----WSVEFSPVDQVVITAS---------------------------------GDKTIKIWSISDGSCLKTFEGHTSSVL 582 (706)
Q Consensus 540 ----~~~~~s~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~i~ 582 (706)
..++++|+...+++.. .+|.|..||+.+++.+-+.... .++.
T Consensus 411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~ 489 (582)
T 1flg_A 411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLW 489 (582)
T ss_dssp SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCC
T ss_pred ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCc
Confidence 1345666655554432 3678999999999988776633 2332
Q ss_pred EEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcE-EEEEEcCCCC-EEEEE
Q 005254 583 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKI-WALAVGKKTE-MFATG 638 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~-~l~~~ 638 (706)
.-.....+.+++.++.||.++.||.++|+.+..++...+.. .-+.+..+|+ |+++.
T Consensus 490 ~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 490 AGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp SCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred ccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 22333457789899999999999999999999887543322 2356667887 44443
No 256
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.10 E-value=8.7e-09 Score=100.66 Aligned_cols=191 Identities=18% Similarity=0.136 Sum_probs=141.1
Q ss_pred ceEEcC-----CCCEEEEeeCC--eEEEEEccCCeEEEeecCC-CccEEEEEE-c-cCCCEEEEEe--------------
Q 005254 24 PLVVSS-----DGSFIACACGE--SINIVDLSNASIKSTIEGG-SDTITALAL-S-PDDKLLFSSG-------------- 79 (706)
Q Consensus 24 ~~~~s~-----dg~~l~~~~~~--~i~i~d~~~~~~~~~l~~~-~~~i~~l~~-s-~~~~~l~s~~-------------- 79 (706)
..++|. ||+++.+.... .|.+.|+.+.+....++-. ...+..+++ + |+++++.+++
T Consensus 89 h~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 89 HVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp CEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred ccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence 466776 99999988765 6999999999988755432 345789998 5 9999998884
Q ss_pred ----ccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCC-------------------------------
Q 005254 80 ----HSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR------------------------------- 124 (706)
Q Consensus 80 ----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~------------------------------- 124 (706)
.++.+.+.|.++.+.+.++.--. .-..++++|||+++++.+.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 25689999999999999887433 456788999999999987443
Q ss_pred -------cEEEEECCC--CeE-EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe------------eEE
Q 005254 125 -------KVLVWDVDG--GFC-THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK------------CVA 182 (706)
Q Consensus 125 -------~i~vw~~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------------~~~ 182 (706)
.|.|.|..+ ++. +..+. -.....++.++|||+. +++++..+.+|.++|+.+.+ ...
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~-v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKH-LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSE-EEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCE-EEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence 366666665 433 33333 2234578999999875 55666678999999998653 233
Q ss_pred EeecccceEEEEEEecCCCEEE-EEeCCCEEEEEeCCC
Q 005254 183 TLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDLRD 219 (706)
Q Consensus 183 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~~ 219 (706)
.+. -......++|+++| +++ +.-.++.|.+||++.
T Consensus 326 ~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 326 EPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred EcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 332 23457889999999 555 455699999999977
No 257
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=99.08 E-value=4.1e-05 Score=83.72 Aligned_cols=510 Identities=11% Similarity=0.068 Sum_probs=250.6
Q ss_pred eCCeEEEEEccCCeEEEeecCC-CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe-eccCCCeEEEEECCC--
Q 005254 38 CGESINIVDLSNASIKSTIEGG-SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHPS-- 113 (706)
Q Consensus 38 ~~~~i~i~d~~~~~~~~~l~~~-~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~-- 113 (706)
..+.|++.+......+...... ...|.+.+.+. .+++.+. .+.+.++.+.++++.... ..-...|.|+++.|.
T Consensus 490 t~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~ 566 (1158)
T 3ei3_A 490 TSASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGD 566 (1158)
T ss_dssp ESSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSS
T ss_pred ecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCC
Confidence 3445778877655556556533 34677766553 4566664 678888888766432211 123578999999873
Q ss_pred ----CCEEEEecC-CCcEEEEECCCCeEEEEeeC-CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC--CCeeEEE--
Q 005254 114 ----GGLLATAGA-DRKVLVWDVDGGFCTHYFKG-HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL--AKKCVAT-- 183 (706)
Q Consensus 114 ----~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~-- 183 (706)
++++|+|.. |++++|+++.+.+.+....- ....+.++++..-+...+|..|-.||.+.-+.+. ++.....
T Consensus 567 ~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~ 646 (1158)
T 3ei3_A 567 SNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKK 646 (1158)
T ss_dssp STTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEE
T ss_pred CcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcccccee
Confidence 469999986 99999999998776654331 1234455555433455679999999988666543 4443321
Q ss_pred eecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcccccc
Q 005254 184 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 263 (706)
Q Consensus 184 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (706)
..--..++.-..+...|..-+.+..+.-..++.-+ ++.....-....+..++.......
T Consensus 647 ~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~-------------------- 705 (1158)
T 3ei3_A 647 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGY-------------------- 705 (1158)
T ss_dssp EECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSS--------------------
T ss_pred EEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccC--------------------
Confidence 11112345444454444433333344444444433 222111111112222222221110
Q ss_pred ceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecccccee-
Q 005254 264 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME- 342 (706)
Q Consensus 264 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~- 342 (706)
..-++... ++.+++..++.-.. -.+..+...-....++.--..+...+-...........
T Consensus 706 ~~g~v~~~-~~~LrI~~i~~~~~------------------~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~ 766 (1158)
T 3ei3_A 706 PDSLALAN-NSTLTIGTIDEIQK------------------LHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 766 (1158)
T ss_dssp TTEEEEEC-SSCEEEEEECCSSS------------------EEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSS
T ss_pred CCcEEEEc-CCceEEEEecccCC------------------eeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccc
Confidence 01233222 33466655432200 01111111111122232222333222222111000000
Q ss_pred eEEeeE--------ecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeC-CcceEEEeeeeeecC-CCE
Q 005254 343 LILSKR--------LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSS-GKI 412 (706)
Q Consensus 343 ~~~~~~--------~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~ 412 (706)
...... ..........-....++. .+-.....+.++++|..+.+.+..+.- ....+.++..+...+ .+.
T Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~ 845 (1158)
T 3ei3_A 767 TTALRPSASTQALSSSVSSSKLFSSSTAPHET-SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 845 (1158)
T ss_dssp EEESSCCHHHHCSEEEECCCCCC-----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCC
T ss_pred cchhhhhhhhhhhhhcccccccccccccCchh-hcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCE
Confidence 000000 000000000000000000 000000125688888888776655543 334455665444333 344
Q ss_pred EEEEee----------CCCcEEEEeCCCceEEEEE-eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcc
Q 005254 413 LIVTGS----------KDNSVRLWDSESRCCVGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481 (706)
Q Consensus 413 ~l~~~~----------~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 481 (706)
++++|+ ..|.|.+|++..++..... ....+.+++++--.. + ++++. ..++++|++...+.
T Consensus 846 ~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g-~-Lla~i--g~~l~vy~l~~~~~----- 916 (1158)
T 3ei3_A 846 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNG-K-LLASI--NSTVRLYEWTTEKE----- 916 (1158)
T ss_dssp EEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETT-E-EEEEE--TTEEEEEEECTTSC-----
T ss_pred EEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCC-E-EEEEc--CCEEEEEECCCCce-----
Confidence 577775 3578999998755433221 234678888875543 2 44333 47899999975421
Q ss_pred cccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC--CccEEEEEee-cCCcEEEEEEccCCCEEEEecCCC
Q 005254 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP--DLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDK 558 (706)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg 558 (706)
...... +-..+..+.....++++++|+.-..+.++..+ ..+....-+. +...++++.|-.++ .++.+..+|
T Consensus 917 ----L~~~~~-~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~g 990 (1158)
T 3ei3_A 917 ----LRTECN-HYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAF 990 (1158)
T ss_dssp ----EEEEEE-ECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTS
T ss_pred ----EEEEee-ccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCC
Confidence 111111 11123333343457899999988877776543 3333333222 55678888887554 677789999
Q ss_pred cEEEEEcCCC--------ceEEEEeecc-cCEEEEE---EEeC---------CCEEEEEeCCCCEEEEE
Q 005254 559 TIKIWSISDG--------SCLKTFEGHT-SSVLRAS---FLTR---------GAQIVSCGADGLVKLWT 606 (706)
Q Consensus 559 ~i~iwd~~~~--------~~~~~~~~~~-~~i~~~~---~s~~---------~~~l~~~~~dg~i~iwd 606 (706)
.+.+...... ++...-.-|- ..|+++. +.+. ...++.++.+|.|-+.-
T Consensus 991 Nl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 991 NLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp EEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred cEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 9999876541 2222222233 3555554 2222 12466677777776653
No 258
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.08 E-value=6.1e-08 Score=84.16 Aligned_cols=180 Identities=13% Similarity=0.144 Sum_probs=125.1
Q ss_pred eEEEEEecCCCeEEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe-eCCCcEEE
Q 005254 444 VGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACV 520 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i 520 (706)
...+.|+ ++ .+..+.+.+| .|+.+|+.+++ ...... -........+.++++.|... -.++.+.+
T Consensus 45 tqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgk----------v~~~~~-l~~~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 45 TEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGK----------TLQQIE-LGKRYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCC----------EEEEEE-CCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred cceEEEE-CC-EEEEECCCCCCceEEEEECCCCc----------EEEEEe-cCCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 4678888 54 4677777765 89999998764 222221 12233332233334455444 45889999
Q ss_pred EeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-----cCEEEEEEEeCCCEEEE
Q 005254 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVS 595 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~ 595 (706)
||..+.+.+.++..... ...+++|++.|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|+..+.
T Consensus 112 ~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan 187 (262)
T 3nol_A 112 WNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN 187 (262)
T ss_dssp EETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence 99999999999885332 23444678888887778889999999999888876422 335567776 7765555
Q ss_pred EeCCCCEEEEECCCCeEEEEeccC------------CCcEEEEEEcCCCCEEEEEeC
Q 005254 596 CGADGLVKLWTVRTGECIATYDKH------------EDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 596 ~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~~ 640 (706)
.-.+..|.+.|..+|+.+..+... .+..+.|+++|+++.|.+.+.
T Consensus 188 ~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 188 VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 556889999999999999888632 135689999999887776664
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.07 E-value=6.1e-07 Score=90.95 Aligned_cols=375 Identities=12% Similarity=0.058 Sum_probs=198.7
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCCcc---------EEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGSDT---------ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~---------i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
++.+++....+.|+-+|..+|+.+-.+...... -..+++ .+..++.++.++.|.-+|.++|+.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 554444444357999999999988655433211 012222 356677888899999999999999887654
Q ss_pred cCC----CeE-E-EEECC--CCC-EEEEec------CCCcEEEEECCCCeEEEEeeCCCCcE------------------
Q 005254 101 HDG----PAI-G-MACHP--SGG-LLATAG------ADRKVLVWDVDGGFCTHYFKGHKGVV------------------ 147 (706)
Q Consensus 101 ~~~----~v~-~-~~~s~--~~~-~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~~~v------------------ 147 (706)
... .+. . +.... +++ .+++++ .++.|..+|..+|+.+.........+
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 321 111 1 11111 233 566654 37899999999999887654321111
Q ss_pred -----------------------EEEEEcCCCCceEEEEEec--------------------C----CeEEEEECCCCee
Q 005254 148 -----------------------SSILFHPDTDKSLLFSGSD--------------------D----ATVRVWDLLAKKC 180 (706)
Q Consensus 148 -----------------------~~~~~~~~~~~~~l~~~~~--------------------d----g~i~vwd~~~~~~ 180 (706)
..+++.|+... ++.+.. | +.|..+|..+|+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~--vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNT--IIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTE--EEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCE--EEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 12445555444 444432 2 6899999999999
Q ss_pred EEEeec--cc--------ceEEEEEEe-cCCC---EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeE-Eee-CCCCCc
Q 005254 181 VATLDK--HF--------SRVTSMAIT-SDGS---TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAV-CAI-PPGSAF 244 (706)
Q Consensus 181 ~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~ 244 (706)
+..++. |. .++. +... .+|+ .++.++.+|.++++|.++++.+...+....+.-. ... ..+...
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEe
Confidence 887753 21 1221 1222 4674 7888899999999999999988776654321100 000 001000
Q ss_pred ccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEee
Q 005254 245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA 324 (706)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 324 (706)
.. ..+....... .+ . ....................++.|+...+++...
T Consensus 383 ~~--~~~~~~~~~~-------------~~--------~--------~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~ 431 (582)
T 1flg_A 383 ER--EGQRPPLPEP-------------GQ--------K--------HGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPAN 431 (582)
T ss_dssp EC--TTCSCCCCCT-------------TC--------S--------SCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEE
T ss_pred Ec--cccCCccccc-------------cc--------c--------CCCceEECcCCccccCCCCceECCCCCEEEEech
Confidence 00 0000000000 00 0 0000000000111122335566777766666654
Q ss_pred CCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeee
Q 005254 325 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT 404 (706)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 404 (706)
+-.+.++....... .+..-.-..+...|. .....|.+..||+.+++........... ..-.
T Consensus 432 ~~~~~~~~~~~~~~-----------~g~~~~g~~~~~~p~------~~~~~G~l~A~D~~tG~~~W~~~~~~~~-~~g~- 492 (582)
T 1flg_A 432 HWKEDYWTEEVSYT-----------KGSAYLGMGFRIKRM------YDDHVGSLRAMDPVSGKVVWEHKEHLPL-WAGV- 492 (582)
T ss_dssp CEEEEEEECCCCCC-----------TTSCCCCEEEEEEES------CSSCSEEEEEECTTTCCEEEEEEESSCC-CSCC-
T ss_pred hcceeeeccccccc-----------CCCceeccceeecCC------CCCCcceEEEEECCCCCEEEEecCCCCC-cccc-
Confidence 43333222111000 000000000000110 0123588999999999887666543211 1111
Q ss_pred eeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe-EEEEEecCCCeEEEEec
Q 005254 405 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 405 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~ 461 (706)
....+.. ++.++.|+.++.||.++++.+..++...+.. .-+.+..+|+.++++.+
T Consensus 493 -~~taggl-vf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 493 -LATAGNL-VFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp -EEETTTE-EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred -eEeCCCE-EEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 2233555 6779999999999999999999887654332 23666677775665543
No 260
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.06 E-value=2.6e-08 Score=86.50 Aligned_cols=178 Identities=13% Similarity=0.116 Sum_probs=126.0
Q ss_pred ceEEcCCCCEEEEeeC-C--eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEE-eccCeEEEEECCCCeEEEEee
Q 005254 24 PLVVSSDGSFIACACG-E--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-GHSREIRVWDLSTLKCLRSWK 99 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~-~--~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~ 99 (706)
.+.|+ |+.++.+.+. + .|+++|+++++.+..+.-.. ......+.++++.|..+ -.++.+.++|.++++.+.++.
T Consensus 47 GL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~ 124 (262)
T 3nol_A 47 GFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN 124 (262)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred eEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence 38888 6654444433 2 79999999999988776543 33333333445566555 458899999999999999998
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCC--C---CcEEEEEEcCCCCceEEEEEecCCeEEEEE
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH--K---GVVSSILFHPDTDKSLLFSGSDDATVRVWD 174 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 174 (706)
....+ ..+++|++.|+....++.|.++|.++.+.+..+... . ..++.+.|. ++. +.+....++.|.+.|
T Consensus 125 ~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~--lyan~w~~~~I~vID 198 (262)
T 3nol_A 125 YDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE--IFANVWQTNKIVRID 198 (262)
T ss_dssp CSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTSSEEEEEC
T ss_pred CCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE--EEEEEccCCeEEEEE
Confidence 54322 344467787777766788999999999888876542 1 334567776 443 355555788999999
Q ss_pred CCCCeeEEEeecc------------cceEEEEEEecCCCEEEEEeCC
Q 005254 175 LLAKKCVATLDKH------------FSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 175 ~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~d 209 (706)
.++++.+..+... ..-.+.++|+|+++.|++.+..
T Consensus 199 p~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 199 PETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 9999998887532 1356899999998888887753
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.01 E-value=2.2e-07 Score=80.03 Aligned_cols=175 Identities=18% Similarity=0.136 Sum_probs=122.4
Q ss_pred eEEcCCCCEEEEeeCC----eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEE-EeccCeEEEEECCCCeEEEEee
Q 005254 25 LVVSSDGSFIACACGE----SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFS-SGHSREIRVWDLSTLKCLRSWK 99 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~----~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~ 99 (706)
+.|++ + .|..+.+. .|+++|+.+++.+..+.-... .....+.++++.|.. .-.++.+.++|.++.+.+.++.
T Consensus 26 L~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~ 102 (243)
T 3mbr_X 26 LFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFR 102 (243)
T ss_dssp EEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred EEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEe
Confidence 78876 4 44444443 799999999999887764332 222223333555554 4568899999999999999998
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCC-----CcEEEEEEcCCCCceEEEEEecCCeEEEEE
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHK-----GVVSSILFHPDTDKSLLFSGSDDATVRVWD 174 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 174 (706)
....+ ..+ .+|++.|+++..++.|.++|.++.+.+..+.-.. ..++.+.+. ++. +.+....+..|.+.|
T Consensus 103 ~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~--lyanvw~s~~I~vID 176 (243)
T 3mbr_X 103 YPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE--LLANVWLTSRIARID 176 (243)
T ss_dssp CSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTTTEEEEEC
T ss_pred CCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE--EEEEECCCCeEEEEE
Confidence 54333 233 4567777776668899999999998888776422 345667765 333 344444678999999
Q ss_pred CCCCeeEEEeecc-------------cceEEEEEEecCCCEEEEEeC
Q 005254 175 LLAKKCVATLDKH-------------FSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 175 ~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~ 208 (706)
..+++.+..+.-. ..-.+.++++|+++.|++.+.
T Consensus 177 p~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 177 PASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9999998887522 135689999998888877764
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.01 E-value=2e-07 Score=94.47 Aligned_cols=275 Identities=11% Similarity=0.053 Sum_probs=171.3
Q ss_pred CcEEEEEec-CCcEEEEeC-CCceeeEeeeCCcce-EE---E---eeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE
Q 005254 366 EQYLAVATN-IEQVQVYDL-SSMSCSYVLAGHSEI-VL---C---LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 436 (706)
Q Consensus 366 ~~~l~~~~~-~~~i~~~d~-~~~~~~~~~~~~~~~-i~---~---~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 436 (706)
+..+.+++. ++.+..+|. .+++.+......... +. | +.......+.. ++.++.|+.+..+|..+++.+..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQ-IVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTE-EEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCE-EEEEeCCCEEEEEECCCCCEEEE
Confidence 345666666 789999999 899887766533210 00 0 00001112445 77788899999999999998877
Q ss_pred EeCCCc----CeEE-EEEecCCCeEEEEecC------CCeEEEEEecCCCCCCCcccccceeEEEeec------------
Q 005254 437 GTGHMG----AVGA-VAFSKKLQNFLVSGSS------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH------------ 493 (706)
Q Consensus 437 ~~~~~~----~v~~-~~~~~~~~~~l~~~~~------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~------------ 493 (706)
...... .+.+ ..+. ++ .+++++. ++.|..+|..+++. .......
T Consensus 141 ~~~~~~~~~~~~~~~P~v~-~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~----------~W~~~~~~~~~~~~~~p~~ 207 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVA-KD--TVLMGCSGAELGVRGAVNAFDLKTGEL----------KWRAFATGSDDSVRLAKDF 207 (571)
T ss_dssp EECCCGGGTCBCCSCCEEE-TT--EEEEECBCGGGTCCCEEEEEETTTCCE----------EEEEESSSCHHHHTBCTTT
T ss_pred ecCCCCCccceeccCCEEE-CC--EEEEEecCCccCCCCEEEEEECCCCcE----------EEEEccCCCccccccCccc
Confidence 653221 1211 1122 33 3555544 78999999877642 1111100
Q ss_pred --------------------------CcceEEEEEcCCCCEEEEeeCC----------------CcEEEEeCCCccEEEE
Q 005254 494 --------------------------GKDINSLAVAPNDSLVCTGSQD----------------RTACVWRLPDLVSVVT 531 (706)
Q Consensus 494 --------------------------~~~i~~~~~s~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~ 531 (706)
......+++.++...++.+..+ +.|..+|..+++.+..
T Consensus 208 ~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~ 287 (571)
T 2ad6_A 208 NSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWG 287 (571)
T ss_dssp TTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEE
T ss_pred ccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEE
Confidence 0001235666766667666532 3599999999999888
Q ss_pred Eeec--C--------CcEEEEEEccCCC---EEEEecCCCcEEEEEcCCCceEEEEeecc-------------cCE----
Q 005254 532 FRGH--K--------RGIWSVEFSPVDQ---VVITASGDKTIKIWSISDGSCLKTFEGHT-------------SSV---- 581 (706)
Q Consensus 532 ~~~~--~--------~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~i---- 581 (706)
++.. . .++ -+....+|+ .++.++.+|.++++|..+++.+....... .++
T Consensus 288 ~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~ 366 (571)
T 2ad6_A 288 YQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPE 366 (571)
T ss_dssp EESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGG
T ss_pred ecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccc
Confidence 7642 1 222 123334674 57788899999999999999887664221 111
Q ss_pred ----------------------EEEEEEeCCCEEEEEe-------------------------------------CCCCE
Q 005254 582 ----------------------LRASFLTRGAQIVSCG-------------------------------------ADGLV 602 (706)
Q Consensus 582 ----------------------~~~~~s~~~~~l~~~~-------------------------------------~dg~i 602 (706)
..++++|+..++++.. .+|.|
T Consensus 367 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l 446 (571)
T 2ad6_A 367 FATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQI 446 (571)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEE
T ss_pred cCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeE
Confidence 1357888777776653 35789
Q ss_pred EEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHH
Q 005254 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
..||+.+|+.+..+.... .+....+...+..++.++.||.|+.||..+++.+.
T Consensus 447 ~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 447 RAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp EEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence 999999999888775322 22222223346677778999999999999887653
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.96 E-value=3.1e-07 Score=79.72 Aligned_cols=180 Identities=12% Similarity=0.065 Sum_probs=125.4
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 522 (706)
....+.|+. ..+..+.+.+|.|+.+|+.+++. ..........-..+++..+ ++.+..-.++.+.+||
T Consensus 56 ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv----------~~~~l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 56 FTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQP----------VWMERLGNIFAEGLASDGE-RLYQLTWTEGLLFTWS 122 (268)
T ss_dssp CEEEEEEET--TEEEEEETTTTEEEECCSSCSSC----------SEEEECTTCCEEEEEECSS-CEEEEESSSCEEEEEE
T ss_pred ccceEEEEC--CEEEEEcCCCCEEEEEECCCCcE----------EeEECCCCcceeEEEEeCC-EEEEEEccCCEEEEEE
Confidence 346788874 45788888999999999987752 1111111111233555432 3444455688999999
Q ss_pred CCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-----cCEEEEEEEeCCCEEEEEe
Q 005254 523 LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVSCG 597 (706)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~ 597 (706)
..+.+.+.++..... -..+ ++|++.|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|+..+...
T Consensus 123 ~~Tl~~~~ti~~~~e-GwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw 198 (268)
T 3nok_A 123 GMPPQRERTTRYSGE-GWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIW 198 (268)
T ss_dssp TTTTEEEEEEECSSC-CCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred CCcCcEEEEEeCCCc-eeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEEC
Confidence 999999999885332 2334 4668888888789999999999999888876422 245667777 776555555
Q ss_pred CCCCEEEEECCCCeEEEEeccC-------------CCcEEEEEEcCCCCEEEEEe
Q 005254 598 ADGLVKLWTVRTGECIATYDKH-------------EDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~ 639 (706)
.+..|.+.|..+|+.+..+... .+..+.|+++|+++.|++.+
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 6789999999999999888632 13568999999877666555
No 264
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.94 E-value=8.8e-08 Score=83.05 Aligned_cols=174 Identities=13% Similarity=0.088 Sum_probs=121.7
Q ss_pred eEEcCCCCEEEEeeCC--eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEE-EeccCeEEEEECCCCeEEEEeecc
Q 005254 25 LVVSSDGSFIACACGE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFS-SGHSREIRVWDLSTLKCLRSWKGH 101 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~--~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~ 101 (706)
+.|+ ++.|+.+.+. .|+++|+++++.+..+ -. .........++++.|.. .-.++.+.++|.++++.+.++...
T Consensus 60 L~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~ 135 (268)
T 3nok_A 60 LVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS 135 (268)
T ss_dssp EEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS
T ss_pred EEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC
Confidence 7776 3455555554 7999999999987766 22 22223223334444444 446889999999999999999854
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCC--C---CcEEEEEEcCCCCceEEEEEecCCeEEEEECC
Q 005254 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH--K---GVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176 (706)
Q Consensus 102 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 176 (706)
... ..+++|++.|+.+..++.|.++|.++.+.+..+.-. . ..++.+.|. +|. +.+....++.|.+.|.+
T Consensus 136 ~eG---wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~--lyanvw~s~~I~vIDp~ 209 (268)
T 3nok_A 136 GEG---WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV--IYANIWHSSDVLEIDPA 209 (268)
T ss_dssp SCC---CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTCSEEEEECTT
T ss_pred Cce---eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE--EEEEECCCCeEEEEeCC
Confidence 332 233367888888777899999999999988877542 2 234667777 443 34555568899999999
Q ss_pred CCeeEEEeecc-------------cceEEEEEEecCCCEEEEEeC
Q 005254 177 AKKCVATLDKH-------------FSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 177 ~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~ 208 (706)
+++.+..+.-. ..-.+.++++|+++.|++.+.
T Consensus 210 TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 210 TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99998887532 135689999998877777664
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.92 E-value=1.6e-06 Score=74.71 Aligned_cols=181 Identities=11% Similarity=0.158 Sum_probs=123.9
Q ss_pred cCeEEEEEecCCCeEEEEecCC--CeEEEEEecCCCCCCCcccccceeEEEeecCcce--EEEEEcCCCCEEEEeeCCCc
Q 005254 442 GAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI--NSLAVAPNDSLVCTGSQDRT 517 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~s~~~~~l~~~~~dg~ 517 (706)
.....+.|++ + .+..+.+.+ ..|+.+|+.+++ ...... -.... ..+++. ++++....-.++.
T Consensus 21 ~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgk----------v~~~~~-l~~~~fgeGi~~~-~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 21 AFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGR----------ILQRAE-VPPPYFGAGIVAW-RDRLIQLTWRNHE 86 (243)
T ss_dssp CCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCC----------EEEEEE-CCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred cccccEEEEC-C-EEEEECCCCCCceEEEEECCCCC----------EEEEEe-CCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence 4466788887 3 366666665 489999998764 222221 11222 233433 2344444557889
Q ss_pred EEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-----cCEEEEEEEeCCCE
Q 005254 518 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQ 592 (706)
Q Consensus 518 i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~ 592 (706)
+.+||..+.+.+.++...... ..+ +++++.|+.+..++.|.++|..+.+.+.++.... ..++.+.+. +|+.
T Consensus 87 v~v~D~~tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEETTTTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 999999999999998854332 344 4567777777778899999999999888876432 345666765 6665
Q ss_pred EEEEeCCCCEEEEECCCCeEEEEeccC-------------CCcEEEEEEcCCCCEEEEEeC
Q 005254 593 IVSCGADGLVKLWTVRTGECIATYDKH-------------EDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~ 640 (706)
.+..-.+..|.+.|..+|+.+..+... .+..+.|+++|+++.|.+.+.
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 555556789999999999999888621 135689999998776666553
No 266
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.88 E-value=7.2e-06 Score=77.52 Aligned_cols=235 Identities=9% Similarity=-0.008 Sum_probs=149.5
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
.++.+. ...|+..++............. ....++ +.+.++.++.+-...+.|..++...................+
T Consensus 46 ~ll~~~-~~~I~~i~~~g~~~~~~~~~~~-~~~~l~--~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gl 121 (349)
T 3v64_C 46 VLLFAN-RIDIRQVLPHRSEYTLLLNNLE-NAIALD--FHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL 121 (349)
T ss_dssp EEEEEC-BSCEEEECTTSCCEEEEECSCS-CEEEEE--EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred eeEeec-ccceEEEeCCCCeeEEeecCCC-ceEEEE--EeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEE
Confidence 444443 3568888887665544444333 356666 777788866676778899999988765444444444566789
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CC-CcEEEEeCCC
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QD-RTACVWRLPD 525 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d-g~i~i~d~~~ 525 (706)
++.+.+..+.++-...+.|.+.+++... ........-.....+++.|.+..|+... .. +.|..+++..
T Consensus 122 avd~~~g~ly~~d~~~~~I~~~~~dG~~----------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 122 AVDWVHDKLYWTDSGTSRIEVANLDGAH----------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCS----------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred EEecCCCeEEEEcCCCCeEEEEcCCCCc----------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 9998767677777778899999886532 1122222334578999999665555444 44 6788888764
Q ss_pred ccEEEEEeecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEE
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 604 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 604 (706)
..........-.....++++|++..|+.+ ...+.|..+|+........+.........+++ ..+...++-...+.|..
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~ 270 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS 270 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEE
Confidence 33322222234457899999877666555 45678999998644333333333445677777 34545555556678888
Q ss_pred EECCCCeEEEEec
Q 005254 605 WTVRTGECIATYD 617 (706)
Q Consensus 605 wd~~~~~~~~~~~ 617 (706)
++..+|+.+..+.
T Consensus 271 ~~~~~G~~~~~i~ 283 (349)
T 3v64_C 271 ANKFTGKNQEIIR 283 (349)
T ss_dssp EETTTCCSCEEEE
T ss_pred EEccCCCccEEec
Confidence 8876776555554
No 267
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.86 E-value=7.1e-06 Score=78.80 Aligned_cols=246 Identities=9% Similarity=-0.008 Sum_probs=156.2
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
+++.+.. ..|+.+++............ .....++ +.+.++.++++-...+.|..++...................+
T Consensus 89 ~l~~~~~-~~I~~i~~~~~~~~~~~~~~-~~~~gl~--~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gl 164 (386)
T 3v65_B 89 VLLFANR-IDIRQVLPHRSEYTLLLNNL-ENAIALD--FHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL 164 (386)
T ss_dssp EEEEECB-SCEEEECTTSCCCEEEECSC-SCEEEEE--EETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCE
T ss_pred eeEeecC-ccceeeccCCCcEEEEecCC-CccEEEE--EecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEE
Confidence 4444433 67888888776555444433 3456666 777788867777778899999988766544444444566789
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CC-CcEEEEeCCC
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QD-RTACVWRLPD 525 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d-g~i~i~d~~~ 525 (706)
++.+.+..+.++-...+.|.+.++.... ........-.....+++.|.+..|+... .. +.|..+++..
T Consensus 165 avd~~~g~lY~~d~~~~~I~~~~~dg~~----------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 165 AVDWVHDKLYWTDSGTSRIEVANLDGAH----------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp EEETTTTEEEEEETTTTEEEECBTTSCS----------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred EEEeCCCeEEEEcCCCCeEEEEeCCCCc----------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 9998767677777778888888876431 1122222335578999998766665554 33 6788888765
Q ss_pred ccEEEEEeecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEE
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 604 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 604 (706)
..........-.....|+|+|++..|+.+ ...+.|..+|+........+.........+++ ..+..+++-...+.|..
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS 313 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEE
Confidence 44333333334457899999876666555 45678999998644333333333445677787 44545555556788999
Q ss_pred EECCCCeEEEEeccCCCcEEEEEE
Q 005254 605 WTVRTGECIATYDKHEDKIWALAV 628 (706)
Q Consensus 605 wd~~~~~~~~~~~~~~~~v~~~~~ 628 (706)
++..+|+.+..+.........|++
T Consensus 314 ~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 314 ANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EETTTCCSCEEEECSCSCCCCEEE
T ss_pred EECCCCcceEEEccCCCCCceEEE
Confidence 987777766665533333334443
No 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.86 E-value=3.1e-05 Score=72.08 Aligned_cols=226 Identities=11% Similarity=0.042 Sum_probs=143.4
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC----ceEEEEEeCCCcCeEEEEEec
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAFSK 451 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~ 451 (706)
..|+..|+.+......+.. .....+++ +.+.++.++++-...+.|..++... ......+.........+++.+
T Consensus 10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~--~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPN-LRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (316)
T ss_dssp SSEEEEETTSCCCEEEECS-CSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CeEEEEECCCcceEehhcC-CCceEEEE--EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence 5788889887765554443 33455666 7777777677777788999999876 222222333334568899987
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC--CcEEEEeCCCccEE
Q 005254 452 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD--RTACVWRLPDLVSV 529 (706)
Q Consensus 452 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~i~i~d~~~~~~~ 529 (706)
.+.++.++-...+.|.++++.... ..............+++.|.+..|+..... +.|..+++.. ...
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~----------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~ 155 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDI 155 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSS----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCE
T ss_pred cCCeEEEEECCCCEEEEEeCCCCc----------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCe
Confidence 666577777778899999876431 122222234567899999966655555433 6788888753 333
Q ss_pred EEE-eecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcCCCceEEEEee---cccCEEEEEEEeCCCEEEEEeCCCCEEE
Q 005254 530 VTF-RGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKL 604 (706)
Q Consensus 530 ~~~-~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i 604 (706)
..+ ...-.....+++++++..|+.+. ..+.|..+|+.. .....+.. .......+++. .+..+++-...+.|..
T Consensus 156 ~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~ 233 (316)
T 1ijq_A 156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFS 233 (316)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEE
Confidence 333 22345678999999877666554 567899999864 33333321 12345677774 4445555556678999
Q ss_pred EECCCCeEEEEec
Q 005254 605 WTVRTGECIATYD 617 (706)
Q Consensus 605 wd~~~~~~~~~~~ 617 (706)
++..+|+.+..+.
T Consensus 234 ~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 234 ANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTCCCCEEEE
T ss_pred EeCCCCcceEEEe
Confidence 9987777555553
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.86 E-value=1.7e-05 Score=74.89 Aligned_cols=192 Identities=13% Similarity=0.077 Sum_probs=125.2
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe-ccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
|.+..+ ..+|+++..+.|+..++.+......+.+. ..+..++|++....|..+. ..+.|..++.........+....
T Consensus 38 C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 115 (349)
T 3v64_C 38 CKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 115 (349)
T ss_dssp EEESSS-CCEEEEECBSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred cccccc-CceeEeecccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC
Confidence 555556 45777777778999998776655545443 4578999998776666554 57889999988765444343333
Q ss_pred CCeEEEEECCCCCEEEE-ecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecC-CeEEEEECCCCee
Q 005254 103 GPAIGMACHPSGGLLAT-AGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD-ATVRVWDLLAKKC 180 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~ 180 (706)
.....+++.+.+..|.. -...+.|.+.+.+.......+.........+++.|.+.. ++++-... +.|...++.....
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~-ly~td~~~~~~I~r~~~dG~~~ 194 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGR 194 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSC
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCe-EEEeccCCCCEEEEEeCCCCCc
Confidence 45678999986655544 445678999998765444334444567899999997554 34444444 7888888754332
Q ss_pred EEEeecccceEEEEEEecCCCEEEEEeC-CCEEEEEeCC
Q 005254 181 VATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLR 218 (706)
Q Consensus 181 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~ 218 (706)
.............+++++++..|+.+.. .+.|..++++
T Consensus 195 ~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 195 RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 2222223345788999987776666643 4566666653
No 270
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.85 E-value=2.4e-06 Score=74.99 Aligned_cols=191 Identities=14% Similarity=0.152 Sum_probs=130.6
Q ss_pred cceEEcCCCCEEEEeeCC--eEEEEEccCCeEEEeec-CCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeE---EE
Q 005254 23 GPLVVSSDGSFIACACGE--SINIVDLSNASIKSTIE-GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC---LR 96 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~--~i~i~d~~~~~~~~~l~-~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~ 96 (706)
+.++++|+++.|++..+. .|...|.. ++.++.+. +.....-.|++.+++.++++.-.++.+.++++..... +.
T Consensus 30 SGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~ 108 (255)
T 3qqz_A 30 SSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILK 108 (255)
T ss_dssp EEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred ceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeee
Confidence 369999988777765554 79999987 88777663 2234578899999998777765678899998865432 22
Q ss_pred Eee------ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC---CeEEEEee-------CCCCcEEEEEEcCCCCceE
Q 005254 97 SWK------GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG---GFCTHYFK-------GHKGVVSSILFHPDTDKSL 160 (706)
Q Consensus 97 ~~~------~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~---~~~~~~~~-------~~~~~v~~~~~~~~~~~~~ 160 (706)
... ........++|+|+++.|.++.+.....+|.++. ...+..+. .+...+..+++.|... .+
T Consensus 109 ~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg-~l 187 (255)
T 3qqz_A 109 KIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN-TL 187 (255)
T ss_dssp EEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT-EE
T ss_pred eeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC-eE
Confidence 221 1345678999999998888877665556666541 11122221 1344678999999854 56
Q ss_pred EEEEecCCeEEEEECCCCeeEEEeeccc---------ceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 161 LFSGSDDATVRVWDLLAKKCVATLDKHF---------SRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 161 l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
++....+..+..+|.. ++.+..+.-.. .....++|.++|+ |++.++.+.++.+.-
T Consensus 188 liLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 188 LVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred EEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 6667788889999975 55555443221 3678999999997 666688887777653
No 271
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.84 E-value=4.8e-06 Score=78.26 Aligned_cols=232 Identities=12% Similarity=0.006 Sum_probs=142.8
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-------------------CCcCeEEEEEec-CCCeEEEEecCCCe
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-------------------HMGAVGAVAFSK-KLQNFLVSGSSDHT 465 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~~v~~~~~~~-~~~~~l~~~~~d~~ 465 (706)
+.+++.. +.++..++.|..|+..++........ ....+..+++.+ ++. |+.+...+.
T Consensus 26 ~d~~g~~-l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~--l~v~d~~~~ 102 (322)
T 2fp8_A 26 FDSTNKG-FYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ--LYIVDCYYH 102 (322)
T ss_dssp CCTTCSS-EEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE--EEEEETTTE
T ss_pred EcCCCCE-EEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc--EEEEECCCC
Confidence 5566654 66777889999999877654322111 113578899997 554 444444445
Q ss_pred EEEEEecCCCCCCCcccccceeE-EEe-ecCcceEEEEEcC-CCCEEEEeeC-----------------CCcEEEEeCCC
Q 005254 466 IKVWSFDGLSDDAEQPMNLKAKA-VVA-AHGKDINSLAVAP-NDSLVCTGSQ-----------------DRTACVWRLPD 525 (706)
Q Consensus 466 i~i~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~s~-~~~~l~~~~~-----------------dg~i~i~d~~~ 525 (706)
+..++...+.. .... ... ........+++.+ +|++.++-.. ++.|..||..+
T Consensus 103 i~~~d~~~g~~--------~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 103 LSVVGSEGGHA--------TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEEECTTCEEC--------EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEEEeCCCCEE--------EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 77776543210 0000 000 1123467899999 9987766432 36788888876
Q ss_pred ccEEEEEeecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcCCCc--eEEEEeecccCEEEEEEEeCCCEEEEEeC----
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGS--CLKTFEGHTSSVLRASFLTRGAQIVSCGA---- 598 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---- 598 (706)
++...... .......++++|+++.|+.+ ...+.|.+|++.... ....+....+ ...+++.++|++.++...
T Consensus 175 ~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 175 KETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp TEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred CEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence 65433222 22345679999999866555 556889999987421 1222221223 778899999987766544
Q ss_pred ------CCCEEEEECCCCeEEEEeccCC----CcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 599 ------DGLVKLWTVRTGECIATYDKHE----DKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 599 ------dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
.+.|..+|. .++.+..+.... ..++++.+ .++++.++....+.|..+++...
T Consensus 253 ~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp STTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred cccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 467888887 588777776432 34666766 46666666667888999987643
No 272
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.83 E-value=6.1e-06 Score=77.56 Aligned_cols=201 Identities=11% Similarity=0.015 Sum_probs=125.0
Q ss_pred eeccceEEcCCCCEEEEeeC-CeEEEEEccCCeEEEeecC-------------------CCccEEEEEEcc-CCCEEEEE
Q 005254 20 YGGGPLVVSSDGSFIACACG-ESINIVDLSNASIKSTIEG-------------------GSDTITALALSP-DDKLLFSS 78 (706)
Q Consensus 20 ~~~~~~~~s~dg~~l~~~~~-~~i~i~d~~~~~~~~~l~~-------------------~~~~i~~l~~s~-~~~~l~s~ 78 (706)
.....++++++|+++.++.. +.|..||..+++....... ....+..+++++ +++ |+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 34457999999996666554 4899999877654322110 013578999998 565 5555
Q ss_pred eccCeEEEEECCCCeEEEEeec-----cCCCeEEEEECC-CCCEEEEecC-----------------CCcEEEEECCCCe
Q 005254 79 GHSREIRVWDLSTLKCLRSWKG-----HDGPAIGMACHP-SGGLLATAGA-----------------DRKVLVWDVDGGF 135 (706)
Q Consensus 79 ~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~-~~~~l~~~~~-----------------d~~i~vw~~~~~~ 135 (706)
...+.|..+|..+++. ..+.. .......+++.+ +|.+.++-.. ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 4455688899876643 22211 123578899999 9986665432 3678899988776
Q ss_pred EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe--eEEEeecccceEEEEEEecCCCEEEEEeC-----
Q 005254 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLISAGR----- 208 (706)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----- 208 (706)
...... .......++|+|+++. ++++-...+.|.++++.... ....+....+ ...+++.++|++.++...
T Consensus 177 ~~~~~~-~~~~p~gia~~~dg~~-lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 177 TTLLLK-ELHVPGGAEVSADSSF-VLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEE-EESCCCEEEECTTSSE-EEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEEecc-CCccCcceEECCCCCE-EEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 443322 1233467999998765 23444566889999987421 1112211223 778999999986665544
Q ss_pred -----CCEEEEEeCCCCcceeee
Q 005254 209 -----DKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 209 -----dg~i~~w~~~~~~~~~~~ 226 (706)
.+.|..++.. ++.+..+
T Consensus 254 ~~~~~~~~v~~~d~~-G~~~~~~ 275 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEF-GNILEVI 275 (322)
T ss_dssp TTSCEEEEEEEECTT-SCEEEEE
T ss_pred ccCCCccEEEEECCC-CCEEEEE
Confidence 4667777764 4444333
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.79 E-value=8.4e-05 Score=71.61 Aligned_cols=246 Identities=10% Similarity=0.031 Sum_probs=156.0
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc----eEEEEEeCCCcC
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMGA 443 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~ 443 (706)
+++.+. ...|+..++.......... ....+..++ +.+.++.+..+-...+.|+.+++... ............
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~--~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEE--EETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEe--eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 444443 3788888888765544443 344566777 88878886666667788999988752 233334445567
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC--CCcEEEE
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ--DRTACVW 521 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~ 521 (706)
...+++.+.++++.++-...+.|.+.+++... ..............+++.|.+.+|+.... .+.|...
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~----------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~ 230 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 230 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTCS----------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCCc----------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence 78899998666677777778899988876542 22223333455789999997666665542 3678888
Q ss_pred eCCCccEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcCCCceEEEEee--cccCEEEEEEEeCCCEEEEEeC
Q 005254 522 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTFEG--HTSSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 522 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~ 598 (706)
++............-.....|++++++..|+.+. ..+.|..+|+........... .......+++. .+..+.+-..
T Consensus 231 ~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~ 309 (400)
T 3p5b_L 231 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDII 309 (400)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESS
T ss_pred eCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCC
Confidence 8865444333343445678999998877776664 467899999864433333322 22345566663 3344555556
Q ss_pred CCCEEEEECCCCeEEEEeccCCCcEEEEEE
Q 005254 599 DGLVKLWTVRTGECIATYDKHEDKIWALAV 628 (706)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 628 (706)
.+.|..+|..+|+.+..+.........+.+
T Consensus 310 ~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 310 NEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp SCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred CCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 688999998888766666543334444443
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.76 E-value=7.3e-05 Score=72.07 Aligned_cols=186 Identities=12% Similarity=0.069 Sum_probs=122.8
Q ss_pred CCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe-ccCeEEEEECCCC----eEEEEeeccCCCe
Q 005254 31 GSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLSTL----KCLRSWKGHDGPA 105 (706)
Q Consensus 31 g~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~----~~~~~~~~~~~~v 105 (706)
..+|+++....|+..++.+......+. ....+.+|+|++.+..|..+. ..+.|..+++... .....+.......
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred cceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 357888888899999998776555444 456779999999777666654 4678999998652 2333333344567
Q ss_pred EEEEECCCCCEEEE-ecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE-ecCCeEEEEECCCCeeEEE
Q 005254 106 IGMACHPSGGLLAT-AGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG-SDDATVRVWDLLAKKCVAT 183 (706)
Q Consensus 106 ~~~~~s~~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~ 183 (706)
..+++.+.+..|.. -...+.|.+.+++.......+.........+++.|.+.. ++++- +..+.|...++........
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~-ly~td~~~~~~I~~~~~dG~~~~~~ 240 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSL 240 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTE-EEEEECSSSCCEEEEETTSCSCEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCe-EEEEeCCCCCEEEEEeCCCCccEEE
Confidence 89999985555544 456788999998876655555545566899999997655 22332 2347788888764443333
Q ss_pred eecccceEEEEEEecCCCEEEEEeC-CCEEEEEeCC
Q 005254 184 LDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLR 218 (706)
Q Consensus 184 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~ 218 (706)
+...-.....|++++++..|+.+.. .+.|..++++
T Consensus 241 ~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 241 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 3333456788999987777776653 4566666653
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.75 E-value=9e-05 Score=68.95 Aligned_cols=185 Identities=12% Similarity=0.080 Sum_probs=123.5
Q ss_pred CEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe-ccCeEEEEECCC----CeEEEEeeccCCCeE
Q 005254 32 SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLST----LKCLRSWKGHDGPAI 106 (706)
Q Consensus 32 ~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~-~d~~i~iwd~~~----~~~~~~~~~~~~~v~ 106 (706)
.+|+++..+.|+..|+.+.+....+.. -....+++|++++..|..+. ..+.|..+++.+ ......+...-....
T Consensus 2 ~~ll~~~~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 2 AYLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp CEEEEECBSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred CEEEEECCCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 367888888999999988776655543 45678999999776666554 468999999876 222222332224567
Q ss_pred EEEECCCCCEEEEe-cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec-CCeEEEEECCCCeeEEEe
Q 005254 107 GMACHPSGGLLATA-GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD-DATVRVWDLLAKKCVATL 184 (706)
Q Consensus 107 ~~~~s~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~ 184 (706)
.+++++.+..|..+ ...+.|.+.+.+.......+.........+++.|.+.. ++++... .+.|...++. ++....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~-ly~~d~~~~~~I~~~~~d-G~~~~~~ 158 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLN-GVDIYSL 158 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTE-EEEEECSSSCEEEEEETT-SCCEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCE-EEEEccCCCCeEEEEcCC-CCCeEEE
Confidence 89999766555444 56788999998765444444434567899999987665 2333323 3788888875 3333333
Q ss_pred -ecccceEEEEEEecCCCEEEEEe-CCCEEEEEeCCC
Q 005254 185 -DKHFSRVTSMAITSDGSTLISAG-RDKVVNLWDLRD 219 (706)
Q Consensus 185 -~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~ 219 (706)
...-.....+++++++..|+.+. ..+.|..++++.
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 23345678999999877777665 456899999874
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.73 E-value=3.4e-05 Score=74.06 Aligned_cols=222 Identities=12% Similarity=0.008 Sum_probs=143.9
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 432 (706)
...+..++|.+.++.++.+-...+.|..+++........+.........++ +.+.++.+.++-...+.|.+.++....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla--vd~~~g~lY~~d~~~~~I~~~~~dg~~ 192 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA--VDWVHDKLYWTDSGTSRIEVANLDGAH 192 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE--EETTTTEEEEEETTTTEEEECBTTSCS
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE--EEeCCCeEEEEcCCCCeEEEEeCCCCc
Confidence 345778888887777777777788999999887654444433333334455 666677766676777889998887654
Q ss_pred EEEEEeCCCcCeEEEEEecCCCeEEEEecCC-CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE
Q 005254 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 433 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (706)
..............+++.|.+..+.++-... +.|..++++... ........-.....++++|++..|..
T Consensus 193 ~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----------~~~~~~~~~~~PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 193 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG----------RRIIADTHLFWPNGLTIDYAGRRMYW 262 (386)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----------CEEEECSSCSCEEEEEEEGGGTEEEE
T ss_pred eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC----------cEEEEECCCCCeeeEEEeCCCCEEEE
Confidence 4444444556788999999777555555555 778887766431 11122222345689999986666655
Q ss_pred e-eCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 512 G-SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 512 ~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
+ ...+.|..+|+........+.........+++ ..+..+++-...+.|..++..+++.+..+.........+++.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~ 338 (386)
T 3v65_B 263 VDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL 338 (386)
T ss_dssp EETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEE
Confidence 5 45677999998654443334434455678888 345566666677889999877787776665433344444443
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.73 E-value=1.6e-06 Score=91.67 Aligned_cols=191 Identities=13% Similarity=0.117 Sum_probs=115.2
Q ss_pred eccceEEc-CCCCEEEEeeCC------eEEEEEccCC-eEEE-eecCCCccEEEEEEccCCCEEEEEecc-----CeEEE
Q 005254 21 GGGPLVVS-SDGSFIACACGE------SINIVDLSNA-SIKS-TIEGGSDTITALALSPDDKLLFSSGHS-----REIRV 86 (706)
Q Consensus 21 ~~~~~~~s-~dg~~l~~~~~~------~i~i~d~~~~-~~~~-~l~~~~~~i~~l~~s~~~~~l~s~~~d-----~~i~i 86 (706)
..+..+|| |||++||++... .|+++|+.++ +.+. .+. .....++|+|||+.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 44578999 999999988652 4999999998 6321 121 123468999999988876554 36888
Q ss_pred EECCCCeE--EEEee-ccCCCeEEEEECCCCCEEEEec---CCCcEEEEECCCC--eE--EEEeeCCCCcEEEEEEcCCC
Q 005254 87 WDLSTLKC--LRSWK-GHDGPAIGMACHPSGGLLATAG---ADRKVLVWDVDGG--FC--THYFKGHKGVVSSILFHPDT 156 (706)
Q Consensus 87 wd~~~~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~---~d~~i~vw~~~~~--~~--~~~~~~~~~~v~~~~~~~~~ 156 (706)
+++.++.. ...+. ........+.|||||++|+..+ ....|.++|+.++ +. .............+.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 99887642 22232 2234567889999999988765 3456889999875 22 222233445555555543 4
Q ss_pred CceEEEEEecC----CeEEEEECCCCeeEEE-eecccc--eEEEEEEecCCCEEEEEeCCCE--EEEEeC
Q 005254 157 DKSLLFSGSDD----ATVRVWDLLAKKCVAT-LDKHFS--RVTSMAITSDGSTLISAGRDKV--VNLWDL 217 (706)
Q Consensus 157 ~~~~l~~~~~d----g~i~vwd~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~~~~~dg~--i~~w~~ 217 (706)
+. +++....+ ..|..+++.++..... +-.+.. .+..+.+. .+.++++...++. |.++++
T Consensus 331 ~~-l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 331 SH-LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TE-EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred CE-EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 54 23333332 3677778765322122 222322 44555554 2334555666775 455554
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.71 E-value=1.8e-05 Score=69.56 Aligned_cols=199 Identities=12% Similarity=0.144 Sum_probs=130.4
Q ss_pred EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE-eecCcceEEEEEcCCCCEEEEeeCC
Q 005254 437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQD 515 (706)
Q Consensus 437 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d 515 (706)
+.+-...+..++++|++..+.++...++.|...|.. ++ ..... .........+++.+++.++++.-.+
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~----------v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~ 90 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD----------LIRTIPLDFVKDLETIEYIGDNQFVISDERD 90 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC----------EEEEEECSSCSSEEEEEECSTTEEEEEETTT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC----------EEEEEecCCCCChHHeEEeCCCEEEEEECCC
Confidence 445556799999999877667777788888888876 21 22222 1223567889999999877776677
Q ss_pred CcEEEEeCCCccE---EEEEe------ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC---CCceEEEEee-------
Q 005254 516 RTACVWRLPDLVS---VVTFR------GHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS---DGSCLKTFEG------- 576 (706)
Q Consensus 516 g~i~i~d~~~~~~---~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~------- 576 (706)
+.+.++++..... ..... ..+.....++|+|.++.|+++.+.....+|.+. ....+..+..
T Consensus 91 ~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~ 170 (255)
T 3qqz_A 91 YAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF 170 (255)
T ss_dssp TEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred CcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence 8899998765442 22221 134456899999999888887776656666654 1112222211
Q ss_pred cccCEEEEEEEeCCC-EEEEEeCCCCEEEEECCCCeEEEEeccCC---------CcEEEEEEcCCCCEEEEEeCCCcEEE
Q 005254 577 HTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGECIATYDKHE---------DKIWALAVGKKTEMFATGGSDALVNL 646 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~i~v 646 (706)
+...+..+++.|... +++.......+.++|.. |+.+..+.-.. ..--.|+|.++|++.+ .++.+.+.+
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~ 248 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYR 248 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEE
T ss_pred ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEE
Confidence 223567899998654 55666667788999965 66666654221 2457899999998555 477765555
Q ss_pred EE
Q 005254 647 WH 648 (706)
Q Consensus 647 w~ 648 (706)
++
T Consensus 249 f~ 250 (255)
T 3qqz_A 249 FT 250 (255)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.70 E-value=3.3e-05 Score=71.56 Aligned_cols=230 Identities=10% Similarity=0.035 Sum_probs=143.1
Q ss_pred CCcEEEEeCCCce-eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE-EEEEeCCCcCeEEEEEecC
Q 005254 375 IEQVQVYDLSSMS-CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMGAVGAVAFSKK 452 (706)
Q Consensus 375 ~~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~ 452 (706)
...|+.+++.... ..............++ +.+.++.+..+-...+.|..++...+.. .............+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld--~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~ 89 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVD--FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 89 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEE--EEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEE--EEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence 3678888887653 1112212223445566 7777777667767778899999876532 1222223345678999986
Q ss_pred CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee--CCCcEEEEeCCCccEEE
Q 005254 453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSVV 530 (706)
Q Consensus 453 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~ 530 (706)
+..+.++-...+.|.+++++... ..............+++.|.+..|+... ..+.|...++.......
T Consensus 90 ~g~ly~~d~~~~~I~~~~~dG~~----------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLDGSL----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI 159 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSCS----------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CCeEEEEECCCCEEEEEECCCCc----------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence 66677777778899999886532 1122223345578999998766666555 25778888875433322
Q ss_pred EEeecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 531 TFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 531 ~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
.....-.....++++|++..|+.+ ...+.|..+|+..........+.......+++. .+..+.+-...+.|..++..+
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCC
Confidence 223333456899999977666655 456789999986433322233233456677775 334445555667899999888
Q ss_pred CeEEEEec
Q 005254 610 GECIATYD 617 (706)
Q Consensus 610 ~~~~~~~~ 617 (706)
|+....+.
T Consensus 239 G~~~~~i~ 246 (318)
T 3sov_A 239 GEGLREIH 246 (318)
T ss_dssp CCSCEEEE
T ss_pred CCceEEEe
Confidence 87655554
No 280
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.62 E-value=7e-05 Score=69.56 Aligned_cols=223 Identities=9% Similarity=0.034 Sum_probs=132.5
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecC-CC-eEEEEEecCCCC
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS-DH-TIKVWSFDGLSD 476 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~-~i~i~~~~~~~~ 476 (706)
...+. +.+++. ++++-..++.|..||..... ..... .......+++.++++ ++++... ++ .|..++...+.
T Consensus 34 pegia--~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~~~~-~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~- 106 (306)
T 2p4o_A 34 LENLA--SAPDGT-IFVTNHEVGEIVSITPDGNQ-QIHAT-VEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGT- 106 (306)
T ss_dssp EEEEE--ECTTSC-EEEEETTTTEEEEECTTCCE-EEEEE-CSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSC-
T ss_pred cceEE--ECCCCC-EEEEeCCCCeEEEECCCCce-EEEEe-CCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCe-
Confidence 34454 667665 36666678899999987643 33332 235688999999987 4444433 22 45555544432
Q ss_pred CCCcccccceeEEEe-ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE-EEEEe---------ecCCcEEEEEEc
Q 005254 477 DAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS-VVTFR---------GHKRGIWSVEFS 545 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~---------~~~~~v~~~~~s 545 (706)
...... ........++..+++..+++...++.|+.+|..+++. +.... ..-.....+ +
T Consensus 107 ---------~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 107 ---------VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp ---------EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred ---------EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 111111 1122234555556655555544688899999765432 21111 111234455 7
Q ss_pred cCCCEEEEe-cCCCcEEEEEcCC-Cce--EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE--EeccC
Q 005254 546 PVDQVVITA-SGDKTIKIWSISD-GSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TYDKH 619 (706)
Q Consensus 546 ~~~~~l~~~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~ 619 (706)
|+++.|+.+ ...+.|..+++.. ++. ...+. .......+++.++|+++++....+.|.++|.. |+... .+...
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~ 253 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG 253 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc
Confidence 888766554 5577899999864 322 12221 11345568999999887777778899999975 66533 34443
Q ss_pred CCcEEEEEEc---CCCCEEEEEeCC
Q 005254 620 EDKIWALAVG---KKTEMFATGGSD 641 (706)
Q Consensus 620 ~~~v~~~~~s---~~~~~l~~~~~d 641 (706)
....++++|. ||++.|..++..
T Consensus 254 ~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 254 VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cCCceEEEEecccCCCCEEEEECCC
Confidence 4568999998 887777665543
No 281
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.62 E-value=3e-06 Score=88.29 Aligned_cols=114 Identities=19% Similarity=0.157 Sum_probs=73.6
Q ss_pred EEEEcc-CCCEEEEEeccC-----------eEEEEECCCCeE--EEEeec-cCCCeEEEEECCCCCEEEEec-CCCcEEE
Q 005254 65 ALALSP-DDKLLFSSGHSR-----------EIRVWDLSTLKC--LRSWKG-HDGPAIGMACHPSGGLLATAG-ADRKVLV 128 (706)
Q Consensus 65 ~l~~s~-~~~~l~s~~~d~-----------~i~iwd~~~~~~--~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~d~~i~v 128 (706)
+.++.+ ++++++.|+.++ .+.+||..+++- +..+.. +.....++++.++++.+++|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887532 688999988753 223322 333344678889999999998 4568999
Q ss_pred EECCCCeEEEEeeCCCCc-EEEEEEcCCCCceEEEEEe-cC-----CeEEEEECCCCee
Q 005254 129 WDVDGGFCTHYFKGHKGV-VSSILFHPDTDKSLLFSGS-DD-----ATVRVWDLLAKKC 180 (706)
Q Consensus 129 w~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~-~d-----g~i~vwd~~~~~~ 180 (706)
||..+++-...-.-+..+ -.+++..++++ +++.|+ .+ ..+.+||..+.+-
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ecCcCCceeECCCCCccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcc
Confidence 999887644332212222 13455566655 366666 34 4688899877653
No 282
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.59 E-value=0.0002 Score=66.43 Aligned_cols=138 Identities=9% Similarity=0.047 Sum_probs=84.7
Q ss_pred CCEEEEEeeCCCcEEEEeCCCceE-EEEEe---------CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC
Q 005254 410 GKILIVTGSKDNSVRLWDSESRCC-VGVGT---------GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE 479 (706)
Q Consensus 410 ~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~---------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~ 479 (706)
+..++++-..++.|..+|..+++. +.... ........+ +++++.+.++-...+.|..+++..... .
T Consensus 127 ~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~-~- 202 (306)
T 2p4o_A 127 DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK-P- 202 (306)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC-B-
T ss_pred CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC-C-
Confidence 344344444578888888776431 11111 111234445 788876777777889999999874210 0
Q ss_pred cccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEE--EEeecCCcEEEEEEc---cCCCEEEEe
Q 005254 480 QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV--TFRGHKRGIWSVEFS---PVDQVVITA 554 (706)
Q Consensus 480 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~~~~s---~~~~~l~~~ 554 (706)
.....+. .......++++++|+++++....+.|.++|.. ++... .+.......++++|. |+++.|+++
T Consensus 203 -----~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 203 -----GEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV 275 (306)
T ss_dssp -----CCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred -----CccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEE
Confidence 0111111 11346779999999887777778899999975 55432 223233568999998 888777766
Q ss_pred cCCC
Q 005254 555 SGDK 558 (706)
Q Consensus 555 ~~dg 558 (706)
+..+
T Consensus 276 ~~~~ 279 (306)
T 2p4o_A 276 TNGG 279 (306)
T ss_dssp ECTT
T ss_pred CCCC
Confidence 5543
No 283
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.57 E-value=2.8e-06 Score=88.49 Aligned_cols=273 Identities=11% Similarity=0.034 Sum_probs=146.8
Q ss_pred EeeEeCCCCcEEEEEecCC-----------cEEEEeCCCceeeE--eeeC-CcceEEEeeeeeecCCCEEEEEee-CCCc
Q 005254 358 DLKFLGEEEQYLAVATNIE-----------QVQVYDLSSMSCSY--VLAG-HSEIVLCLDTCALSSGKILIVTGS-KDNS 422 (706)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~-----------~i~~~d~~~~~~~~--~~~~-~~~~i~~~~~~~~~~~~~~l~~~~-~dg~ 422 (706)
..++.+.++++++.++.+. .+.+||..+.+... .+.. +.....+.. +..++.. ++.|+ .+..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~--~~~~g~l-yv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGIS--MDGNGQI-VVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEE--ECTTSCE-EEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcccccc--CCCCCCE-EEeCCCCCCc
Confidence 4445554666777665432 57889988765432 2211 111111121 4456666 66666 5568
Q ss_pred EEEEeCCCceEEEEEeCCCcCe-EEEEEecCCCeEEEEec-CC-----CeEEEEEecCCCCCCCcccccceeEEEeecCc
Q 005254 423 VRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGS-SD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~-~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (706)
+.+||..+.+.......+..+. .+++..++++ +++.|+ .+ ..+.+||.....-........... ....
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~--~~~~-- 341 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPM--LTAD-- 341 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGG--CCCC--
T ss_pred eEEecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCcccccc--cccc--
Confidence 9999998876554332222222 3455566777 677777 34 568889876532000000000000 0000
Q ss_pred ceEEEEEcCCCCEEEEeeCCC---------cEEEEeCCCccEEEEEeecCC---------cEEEEEEcc-CCCEEEEecC
Q 005254 496 DINSLAVAPNDSLVCTGSQDR---------TACVWRLPDLVSVVTFRGHKR---------GIWSVEFSP-VDQVVITASG 556 (706)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~---------~v~~~~~s~-~~~~l~~~~~ 556 (706)
....+..++..++.|+.+| .+..||..+..-......+.. .-.++.|.. ++++++.|+.
T Consensus 342 --~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~ 419 (656)
T 1k3i_A 342 --KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419 (656)
T ss_dssp --TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred --ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence 0012234555556665443 467888877654433322211 234455543 6788888875
Q ss_pred CC-----------cEEEEEcCCCceEEEE--eecccCE-EEEEEEeCCCEEEEEeCC-----------CCEEEEECCCCe
Q 005254 557 DK-----------TIKIWSISDGSCLKTF--EGHTSSV-LRASFLTRGAQIVSCGAD-----------GLVKLWTVRTGE 611 (706)
Q Consensus 557 dg-----------~i~iwd~~~~~~~~~~--~~~~~~i-~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~ 611 (706)
++ .+.+||..+..-.... ..+.... .++...|+|+.++.|+.+ ..+.+||..+.+
T Consensus 420 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 420 PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp SSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 42 6788888766544332 1122222 234566799999999864 468999998776
Q ss_pred EEEE--eccCCCcEEEEEEcCCCCEEEEEeC
Q 005254 612 CIAT--YDKHEDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 612 ~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~ 640 (706)
-... .........+..+.+|++.++.||.
T Consensus 500 W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 500 FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4321 2222222334556789999998885
No 284
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.55 E-value=0.0017 Score=69.14 Aligned_cols=515 Identities=11% Similarity=0.017 Sum_probs=258.0
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEee-cCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l-~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
+|.-..+|. |-++..+.+..||-.+-+..... ......|.++....+| .|..++.+| +..||..+.+.........
T Consensus 26 ~I~qD~~G~-lWigT~~GL~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~ 102 (758)
T 3ott_A 26 CFLQDSEGL-IWIGSNKGLFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFP 102 (758)
T ss_dssp EEEECTTSC-EEEEESSCEEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCC
T ss_pred EEEECCCCC-EEEEECCCccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCC
Confidence 566677774 44566677888874332211110 1123579998888777 455566554 7899998865433111123
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee----CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK----GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
..|.++.. .++ .|..++.+ -|..+|..+++...... .....|.++....++. +..|+.+| |..++..++
T Consensus 103 ~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~---lWigt~~G-l~~~~~~~~ 175 (758)
T 3ott_A 103 TDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ---IYVGTYNG-LCRYIPSNG 175 (758)
T ss_dssp SCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC---EEEEETTE-EEEEETTTT
T ss_pred ceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC---EEEEeCCC-HhhCccCCC
Confidence 45777765 344 45555555 58889988766433211 1235688888776654 55566555 778887766
Q ss_pred eeEEEe-ecc----cceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC-cceeeeEEeeCCCCCccccccccc
Q 005254 179 KCVATL-DKH----FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT-YEMVEAVCAIPPGSAFDSFLSSYN 252 (706)
Q Consensus 179 ~~~~~~-~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 252 (706)
+..... ... ...|.++...+++..|..++. +-+..++..+.+....... ...+..+....++
T Consensus 176 ~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g----------- 243 (758)
T 3ott_A 176 KFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNG----------- 243 (758)
T ss_dssp EEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTC-----------
T ss_pred ceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCC-----------
Confidence 543211 111 124888888777776666664 4588888766543211100 0111111111111
Q ss_pred chhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEE
Q 005254 253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 332 (706)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (706)
.+..+... -+..++..++........
T Consensus 244 -------------~lWigT~~-Gl~~~~~~~~~~~~~~~~---------------------------------------- 269 (758)
T 3ott_A 244 -------------DLLAGTDN-GLYVYHNDTTPLQHIIHD---------------------------------------- 269 (758)
T ss_dssp -------------CEEEEETT-EEEEECCTTSCCEEECCC----------------------------------------
T ss_pred -------------CEEEEeCC-ceeEEecCCCcEEEEEcC----------------------------------------
Confidence 12222222 233333322211000000
Q ss_pred eeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee-----CCcceEEEeeeeee
Q 005254 333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-----GHSEIVLCLDTCAL 407 (706)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~i~~~~~~~~ 407 (706)
. .....-....|.++... ....+-+++..| +.++.....-...... .....+.++. ..
T Consensus 270 --~----------~~~~~l~~~~i~~i~~D--~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~D 332 (758)
T 3ott_A 270 --S----------RNIQSLTNNIIWNIFAD--QEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLF--RD 332 (758)
T ss_dssp --T----------TCTTSCSCSCEEEEEEC--TTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEE--EC
T ss_pred --C----------CCcCcCCcCeEEEEEEc--CCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEE--Ec
Confidence 0 00000012234444332 333455555555 4444322211111100 1123466654 44
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCCce--EEEEEe-------CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCC
Q 005254 408 SSGKILIVTGSKDNSVRLWDSESRC--CVGVGT-------GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 478 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 478 (706)
.++.. -.|+.+| +..++..+++ ....+. .....|.++.-..++. |-.|+ ++-+..++......
T Consensus 333 ~~g~l--WiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt-~~GL~~~~~~~~~~-- 404 (758)
T 3ott_A 333 SKGFY--WFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ--LWIAT-DGSINRYDYATRQF-- 404 (758)
T ss_dssp TTCCE--EEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSC--EEEEE-TTEEEEEETTTTEE--
T ss_pred CCCCE--EEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCC--EEEEe-CCcHhhcCcCCCcE--
Confidence 55554 4445444 6666655431 111221 1234588888777776 44454 34688888654310
Q ss_pred CcccccceeEEEe----ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc-----cEE---EEEee----cCCcEEEE
Q 005254 479 EQPMNLKAKAVVA----AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-----VSV---VTFRG----HKRGIWSV 542 (706)
Q Consensus 479 ~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~---~~~~~----~~~~v~~~ 542 (706)
....... .....|.++...++|. |.+|+..+-+.++|..+. ... ..+.. ....|.++
T Consensus 405 ------~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i 477 (758)
T 3ott_A 405 ------IHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQI 477 (758)
T ss_dssp ------EEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEE
T ss_pred ------EEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeE
Confidence 0000000 0234578888877775 445666556888885421 111 11111 12358899
Q ss_pred EEccCCCEEEE-ecCCCcEEEEEcCCCceEEEEee---cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEE-ec
Q 005254 543 EFSPVDQVVIT-ASGDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT-YD 617 (706)
Q Consensus 543 ~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~ 617 (706)
...++|.+.+. ++..| +..+|..+++....... ....+.++....+|...+. +.+| +..+|..+++.... ..
T Consensus 478 ~~d~~g~lWi~~~t~~G-l~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~~~~ 554 (758)
T 3ott_A 478 IPDNEGNVWVLLYNNKG-IDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSISFG 554 (758)
T ss_dssp EECTTSCEEEEETTCSS-EEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBCCCC
T ss_pred EEcCCCCEEEEccCCCC-cEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEeccc
Confidence 99998887663 44444 88899877654432110 1245777777777766654 4555 88888766543211 11
Q ss_pred -cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 618 -KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 618 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
.....|.++... +|+ |..++..| |..++..+.
T Consensus 555 gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~ 587 (758)
T 3ott_A 555 SFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTM 587 (758)
T ss_dssp C---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTC
T ss_pred CCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCc
Confidence 113457777763 554 44455555 666776554
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=0.00019 Score=69.89 Aligned_cols=232 Identities=8% Similarity=0.055 Sum_probs=135.2
Q ss_pred eec-CCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC----eEEEEEecCCCCCCCc
Q 005254 406 ALS-SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH----TIKVWSFDGLSDDAEQ 480 (706)
Q Consensus 406 ~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~i~i~~~~~~~~~~~~ 480 (706)
+.| ++.. |.+....+.|+.+|...+....... .......++++++++.++++...++ .+..++.... ..
T Consensus 144 vdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~-~~--- 217 (430)
T 3tc9_A 144 FDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG-FK--- 217 (430)
T ss_dssp EETTEEEE-EEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT-SC---
T ss_pred ECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc-ee---
Confidence 555 3445 4444444789999988776554433 5567889999999884555544322 2333333221 00
Q ss_pred ccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEee-cCCcEEEEEEccCCCEEE-EecCC
Q 005254 481 PMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVI-TASGD 557 (706)
Q Consensus 481 ~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~-~~~~d 557 (706)
....+. .......++++| +|.++++-..++.|..++...+........ .......++|+|++++|+ +-...
T Consensus 218 -----~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 218 -----VITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp -----SEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred -----eeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 011111 234467889999 677666666778999999886654222221 223467899999999554 44567
Q ss_pred CcEEEEEcCC--Cce--EEEEeec---------------ccCEE-EEEEE--------eCCCEEEEEeCCCCEEEEECCC
Q 005254 558 KTIKIWSISD--GSC--LKTFEGH---------------TSSVL-RASFL--------TRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 558 g~i~iwd~~~--~~~--~~~~~~~---------------~~~i~-~~~~s--------~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
+.|..++... ++. ...+.+. -.... .++.. ++|.+.++=...+.|+.++ .+
T Consensus 292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~ 370 (430)
T 3tc9_A 292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQ 370 (430)
T ss_dssp TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TT
T ss_pred CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CC
Confidence 8899988653 221 2222221 01223 34443 2354555555567888888 46
Q ss_pred CeEEEEecc----C-------------CCcEEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 005254 610 GECIATYDK----H-------------EDKIWALAVGKK-TEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 610 ~~~~~~~~~----~-------------~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~ 650 (706)
|+.....-. . -.....|+++++ +.++++-.....|+.++++
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 654433211 0 124689999995 6555555566778877754
No 286
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.51 E-value=0.0022 Score=68.31 Aligned_cols=523 Identities=10% Similarity=0.046 Sum_probs=265.4
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee----
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK---- 99 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---- 99 (706)
++....+| .|.++..+.+..||..+.+...........|.++.. .+| .|..++.+ .|..+|..+++......
T Consensus 67 ~i~~d~~g-~lWigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~ 142 (758)
T 3ott_A 67 CGVIIDNT-YLYMGTDNGILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNG 142 (758)
T ss_dssp EEEEETTT-EEEEEETTEEEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHC
T ss_pred EEEEcCCC-cEEEEeCCCeEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCC
Confidence 35556666 555666778999998877543311112345777765 455 45556655 68889987765433211
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeC-C----CCcEEEEEEcCCCCceEEEEEecCCeEEEEE
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG-H----KGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~----~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 174 (706)
.....|.++....++.+.+. +.+ -|..++..+++....... . ...|.++...+++.. |..|+.. -+..+|
T Consensus 143 l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~--lWigt~~-Gl~~~~ 217 (758)
T 3ott_A 143 LPNNTIYSIIRTKDNQIYVG-TYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQC--VWIGTEG-YLFQYF 217 (758)
T ss_dssp CSCSCEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTE--EEEEEEE-EEEEEE
T ss_pred cCCCeEEEEEEcCCCCEEEE-eCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCE--EEEEECC-CCeEEc
Confidence 12356889988888876653 444 488889887764322111 1 224788877665554 3444443 488899
Q ss_pred CCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccch
Q 005254 175 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQ 254 (706)
Q Consensus 175 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (706)
..+++...........|.++....+|. |..|+.+ -+.+++..+.+......... +...+
T Consensus 218 ~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~~-Gl~~~~~~~~~~~~~~~~~~---------~~~~l---------- 276 (758)
T 3ott_A 218 PSTGQIKQTEAFHNNSIKSLALDGNGD-LLAGTDN-GLYVYHNDTTPLQHIIHDSR---------NIQSL---------- 276 (758)
T ss_dssp TTTTEEEEEEEEEEEEEEEEEECTTCC-EEEEETT-EEEEECCTTSCCEEECCCTT---------CTTSC----------
T ss_pred CCCCeEEeccCCCCCeEEEEEEcCCCC-EEEEeCC-ceeEEecCCCcEEEEEcCCC---------CcCcC----------
Confidence 877654322222234688888887776 4555554 47788876543221110000 00000
Q ss_pred hhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEee
Q 005254 255 TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 334 (706)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 334 (706)
....+.++.... ...+-+++..| +.++...
T Consensus 277 ------------------------------------------------~~~~i~~i~~D~-~g~lWiGT~~G-l~~~~~~ 306 (758)
T 3ott_A 277 ------------------------------------------------TNNIIWNIFADQ-EHNIWLGTDYG-ISLSRYN 306 (758)
T ss_dssp ------------------------------------------------SCSCEEEEEECT-TCCEEEEESSS-EEEECCC
T ss_pred ------------------------------------------------CcCeEEEEEEcC-CCCEEEEeCCc-ccccccC
Confidence 000111111111 22244444444 2222110
Q ss_pred eccccceeeEEeeEe--cccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce--eeEeee-------CCcceEEEee
Q 005254 335 EVPEKKMELILSKRL--VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLA-------GHSEIVLCLD 403 (706)
Q Consensus 335 ~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~--~~~~~~-------~~~~~i~~~~ 403 (706)
. .......... ......+.++.. +....+-+++.. .+..++..++. ....+. .....|.++.
T Consensus 307 ~----~~~~~~~~~~~~~~~~~~v~~i~~--D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~ 379 (758)
T 3ott_A 307 S----ALQFIPISQITGTGDGNQFYSLFR--DSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIY 379 (758)
T ss_dssp C-----CEEEEHHHHSCSCCCCBEEEEEE--CTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEE
T ss_pred C----ceeEEecccCCCCCCCceEEEEEE--cCCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEE
Confidence 0 0000000000 001223444443 233445555554 46666655431 111111 1123466664
Q ss_pred eeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe-C-----CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCC
Q 005254 404 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-G-----HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477 (706)
Q Consensus 404 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~-----~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 477 (706)
...++.. -.|+ ++-+..+|..+++...... . ....|.++...+++. |..|+..+-+..++.......
T Consensus 380 --~d~~g~l--Wigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~--lWigT~~~Gl~~~~~~~~~~~ 452 (758)
T 3ott_A 380 --EDKEQQL--WIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ--LWISTCLGGIFVVDKHKLMQS 452 (758)
T ss_dssp --ECTTSCE--EEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE--EEEEESSSCEEEEEHHHHHHC
T ss_pred --ECCCCCE--EEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC--EEEEECCCceEEEcccccccc
Confidence 4455554 3444 4578999988876544321 1 234577777777654 666766666888875421000
Q ss_pred CCcccccceeEEEe----ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee---cCCcEEEEEEccCCCE
Q 005254 478 AEQPMNLKAKAVVA----AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQV 550 (706)
Q Consensus 478 ~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~ 550 (706)
... ......... -....|.++...++|.+.+.++..+-+..+|..+++....... ....+.++....+|.+
T Consensus 453 ~~~--~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l 530 (758)
T 3ott_A 453 TSG--QYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLL 530 (758)
T ss_dssp CSS--EEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCE
T ss_pred CCc--ceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCE
Confidence 000 000000000 0123588899999998776333344588899877654432111 1245788888888876
Q ss_pred EEEecCCCcEEEEEcCCCceEEE-Eee-cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEE
Q 005254 551 VITASGDKTIKIWSISDGSCLKT-FEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV 628 (706)
Q Consensus 551 l~~~~~dg~i~iwd~~~~~~~~~-~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 628 (706)
.+. +..| +..+|..+++.... ..+ ....|.++... +| .|-.++.+| |..+|..+.+... +......+....+
T Consensus 531 Wig-t~~G-l~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g-~lWi~t~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~~ 604 (758)
T 3ott_A 531 WVG-FHGG-VMRINPKDESQQSISFGSFSNNEILSMTCV-KN-SIWVSTTNG-LWIIDRKTMDARQ-QNMTNKRFTSLLF 604 (758)
T ss_dssp EEE-ETTE-EEEECC--CCCCBCCCCC---CCEEEEEEE-TT-EEEEEESSC-EEEEETTTCCEEE-C--CCCCCSEEEE
T ss_pred EEE-ecCc-eEEEecCCCceEEecccCCCccceEEEEEC-CC-CEEEECCCC-eEEEcCCCceeEE-ecCCCCceeeeEE
Confidence 654 4555 88888765543211 111 12457777653 55 555555656 8888988766432 2111222333344
Q ss_pred -cCCCCEEEEEeCCCcEEEEECC
Q 005254 629 -GKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 629 -s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.++|. |..|+.+|. ..++..
T Consensus 605 ~~~~G~-l~fG~~~Gl-~~f~p~ 625 (758)
T 3ott_A 605 DPKEDC-VYLGGADGF-GISHSN 625 (758)
T ss_dssp ETTTTE-EEEECBSEE-EEEEC-
T ss_pred ECCCCc-EEEecCCce-EEEChh
Confidence 34564 555777774 455554
No 287
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=0.0001 Score=71.82 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=98.8
Q ss_pred cceEEcC-CCCEEEEeeC-CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc----C-eEEEEECCCCeEE
Q 005254 23 GPLVVSS-DGSFIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS----R-EIRVWDLSTLKCL 95 (706)
Q Consensus 23 ~~~~~s~-dg~~l~~~~~-~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d----~-~i~iwd~~~~~~~ 95 (706)
..|+++| ++..|+++.. +.|+.+|+.+++...... .......|+|+++|++|+++... . .+.+.+ ..+...
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~ 217 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFK 217 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSC
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCcee
Confidence 3789998 4556666655 689999998877654444 44567999999999977666541 1 333344 333222
Q ss_pred --EEeeccCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEeeC-CCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 96 --RSWKGHDGPAIGMACHP-SGGLLATAGADRKVLVWDVDGGFCTHYFKG-HKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 96 --~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
..+.. ......++++| ++.++++-..++.|..++.+++........ .......++|+|+++. ++++-...+.|.
T Consensus 218 ~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~-lyv~d~~~~~I~ 295 (430)
T 3tc9_A 218 VITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY-AYIVVVNQHYIL 295 (430)
T ss_dssp SEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE-EEEEETTTTEEE
T ss_pred eeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE-EEEEECCCCEEE
Confidence 22322 23456788999 666666655678899999987765332221 2245789999999874 355556778899
Q ss_pred EEECC
Q 005254 172 VWDLL 176 (706)
Q Consensus 172 vwd~~ 176 (706)
.++..
T Consensus 296 ~~~~d 300 (430)
T 3tc9_A 296 RSDYD 300 (430)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 98765
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.50 E-value=0.00057 Score=63.30 Aligned_cols=219 Identities=11% Similarity=0.011 Sum_probs=135.9
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCcee-eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 433 (706)
....+.|.+.++.++.+-...+.|..+++..... ...+.........++ +.+.++.+.++-...+.|.++++.....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla--vd~~~g~ly~~d~~~~~I~~~~~dG~~~ 113 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA--CDWLGEKLYWTDSETNRIEVSNLDGSLR 113 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE--EETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE--EEcCCCeEEEEECCCCEEEEEECCCCcE
Confidence 4567888876777777777778899998876532 112222222334454 6666777566666778999999876544
Q ss_pred EEEEeCCCcCeEEEEEecCCCeEEEEec-CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe
Q 005254 434 VGVGTGHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (706)
Q Consensus 434 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (706)
.............+++.|.+..+..+-. ..+.|...+++... ........-.....+++++++..|..+
T Consensus 114 ~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----------~~~~~~~~l~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS----------RFIIINSEIYWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS----------CEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC----------eEEEEECCCCCccEEEEeccCCEEEEE
Confidence 3334455567889999987664444442 35777777765431 111112223456899999976666555
Q ss_pred e-CCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEE
Q 005254 513 S-QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586 (706)
Q Consensus 513 ~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 586 (706)
. ..+.|..+|+..................+++.. +..+++-...+.|..++..+++....+.........++.
T Consensus 184 D~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v 257 (318)
T 3sov_A 184 DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 257 (318)
T ss_dssp ETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEE
T ss_pred ECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEE
Confidence 4 567899999864433333333345567778753 455566666788999998888776666543333333443
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.48 E-value=0.00044 Score=72.31 Aligned_cols=228 Identities=11% Similarity=0.046 Sum_probs=145.1
Q ss_pred cCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc----eEEEEEeCCCcCeEEEEE
Q 005254 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMGAVGAVAF 449 (706)
Q Consensus 374 ~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~ 449 (706)
....|+..++........... ...+..++ +.+..+.++++-...+.|+.+++... .....+.........|++
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~--~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv 478 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPN-LRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 478 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECS-CSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred cccceeEeeccCCcceeeecC-CCceEEEe--ecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence 346788888876655444433 34456676 77777776677677788998888753 223334445567788999
Q ss_pred ecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC--CCcEEEEeCCCcc
Q 005254 450 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ--DRTACVWRLPDLV 527 (706)
Q Consensus 450 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~ 527 (706)
.+.++++.++-...+.|.+.++.... ........-.....|++.|.+.+|+.... .+.|...++....
T Consensus 479 D~~~~~LY~tD~~~~~I~v~~ldG~~----------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~ 548 (791)
T 3m0c_C 479 DWIHSNIYWTDSVLGTVSVADTKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 548 (791)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSS----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred eecCCcEEEEecCCCeEEEEeCCCCe----------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence 98887788888888999999987542 22223334455789999997666665543 2678888886544
Q ss_pred EEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcCCCceEEEEeec--ccCEEEEEEEeCCCEEEEEe-CCCCEE
Q 005254 528 SVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTFEGH--TSSVLRASFLTRGAQIVSCG-ADGLVK 603 (706)
Q Consensus 528 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~-~dg~i~ 603 (706)
....+...-.....|++++.+..|+.+. ..+.|...++........+... -.....|++. +.+|+... ..+.|.
T Consensus 549 ~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 549 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 626 (791)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEE
Confidence 4444443446788999998777666654 4567999998644433333321 2234456653 34555444 557788
Q ss_pred EEECCCCeEEEEe
Q 005254 604 LWTVRTGECIATY 616 (706)
Q Consensus 604 iwd~~~~~~~~~~ 616 (706)
..|..+|+.+..+
T Consensus 627 ~~dk~tG~~~~~l 639 (791)
T 3m0c_C 627 SANRLTGSDVNLL 639 (791)
T ss_dssp EEETTTCCCCEEE
T ss_pred EEeCCCCcceEEe
Confidence 8887777654444
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.45 E-value=0.00038 Score=72.78 Aligned_cols=185 Identities=12% Similarity=0.063 Sum_probs=119.4
Q ss_pred CCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEE-eccCeEEEEECCCC----eEEEEeeccCCCe
Q 005254 31 GSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-GHSREIRVWDLSTL----KCLRSWKGHDGPA 105 (706)
Q Consensus 31 g~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~----~~~~~~~~~~~~v 105 (706)
..+|+++....|+..++........+. ....+.+|+|++....|..+ ...+.|+.+++... .....+.......
T Consensus 395 ~p~Ll~an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 395 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp CCEEEEECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccccccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 346777777789999887766544444 34567899999966666554 44678999998753 2233333344566
Q ss_pred EEEEECCCCCEEEEe-cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE-ecCCeEEEEECCCCeeEEE
Q 005254 106 IGMACHPSGGLLATA-GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG-SDDATVRVWDLLAKKCVAT 183 (706)
Q Consensus 106 ~~~~~s~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~ 183 (706)
..|++.+.++.|+.+ ...+.|.+.+++.......+.........|++.|.... ++++- +..+.|...++........
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~-LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCCEEEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCC-EEEecCCCCCeEEEEecCCCceEEE
Confidence 789999887666554 45688999999866554444445566899999997555 23332 2336788888864444333
Q ss_pred eecccceEEEEEEecCCCEEEEEeC-CCEEEEEeC
Q 005254 184 LDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDL 217 (706)
Q Consensus 184 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~ 217 (706)
+...-.....|++.+.+..|+.+.. .+.|...++
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 3333456788888877666666643 345555554
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.41 E-value=0.00025 Score=64.70 Aligned_cols=191 Identities=12% Similarity=0.237 Sum_probs=123.1
Q ss_pred CCCEEEEeeC-CeEEEEEccCCeEEEeecCCCccEEEEEEccC----CCE--EEEE--ec--cCeEEEEEC--CCCeEEE
Q 005254 30 DGSFIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSPD----DKL--LFSS--GH--SREIRVWDL--STLKCLR 96 (706)
Q Consensus 30 dg~~l~~~~~-~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~----~~~--l~s~--~~--d~~i~iwd~--~~~~~~~ 96 (706)
...+++.... +.+.+||+ +|+.++.+.. +.++.+.+-|+ |+. ||.+ .. +++|.+|++ .++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 3444443333 48999999 8888888864 56777777663 322 3333 33 578999977 3443 44
Q ss_pred Eeec------cC-CCeEEEEE--CCC-CC-EEEEecCCCcEEEEECC-------CCeEEEEeeCCCCcEEEEEEcCCCCc
Q 005254 97 SWKG------HD-GPAIGMAC--HPS-GG-LLATAGADRKVLVWDVD-------GGFCTHYFKGHKGVVSSILFHPDTDK 158 (706)
Q Consensus 97 ~~~~------~~-~~v~~~~~--s~~-~~-~l~~~~~d~~i~vw~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~ 158 (706)
.+.. .. ..+..+++ +|. ++ ++++...+|.+..|++. +.+.+..+. ..+.+..+...+....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCCe
Confidence 4421 11 45566777 774 44 67777888999999982 235566666 3467888888876665
Q ss_pred eEEEEEecCCeEEEEECC-----CCeeEEEee-cc-cceEEEEEEe--cCCC-EEEEEe-CCCEEEEEeCC-CCcceeee
Q 005254 159 SLLFSGSDDATVRVWDLL-----AKKCVATLD-KH-FSRVTSMAIT--SDGS-TLISAG-RDKVVNLWDLR-DYSCKLTV 226 (706)
Q Consensus 159 ~~l~~~~~dg~i~vwd~~-----~~~~~~~~~-~~-~~~v~~~~~~--~~~~-~l~~~~-~dg~i~~w~~~-~~~~~~~~ 226 (706)
|+.+-++.-|..++.+ +++.+..+. ++ ...+..|++. ++++ +|++++ .++.+.+||.+ +.+.+..+
T Consensus 194 --Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 194 --LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp --EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred --EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 8889888777777754 345554442 22 2468888884 5555 566665 56799999996 55555444
Q ss_pred c
Q 005254 227 P 227 (706)
Q Consensus 227 ~ 227 (706)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 3
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.40 E-value=0.00038 Score=67.76 Aligned_cols=230 Identities=11% Similarity=0.039 Sum_probs=138.6
Q ss_pred eecC--CCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC---C-eEEEEEecCCCCCCC
Q 005254 406 ALSS--GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---H-TIKVWSFDGLSDDAE 479 (706)
Q Consensus 406 ~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~-~i~i~~~~~~~~~~~ 479 (706)
+.++ +.. |..+...+.|+.+|..++...... ........+++++++. ++++.... . .+...+.....
T Consensus 146 vd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~---- 218 (433)
T 4hw6_A 146 FDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF---- 218 (433)
T ss_dssp ECTTTTTCE-EEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT----
T ss_pred EccccCCCE-EEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe----
Confidence 6663 455 444433388999999887765543 3556688999999998 55554322 1 12222222110
Q ss_pred cccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEee--cCCcEEEEEEccCCCEEEEe-c
Q 005254 480 QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVITA-S 555 (706)
Q Consensus 480 ~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~-~ 555 (706)
...... ........++++| +|.+.++-..++.|+.+|..++.....+.. ....-..++|+|++++|+.+ .
T Consensus 219 -----~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 219 -----TERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp -----CCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred -----eccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 000111 1334567789999 676666666778899999887765333221 12223479999999955544 4
Q ss_pred CCCcEEEEEcC--CCce--EEEEeec---------------ccCEEEEEE---------EeCCCEEEEEeCCCCEEEEEC
Q 005254 556 GDKTIKIWSIS--DGSC--LKTFEGH---------------TSSVLRASF---------LTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 556 ~dg~i~iwd~~--~~~~--~~~~~~~---------------~~~i~~~~~---------s~~~~~l~~~~~dg~i~iwd~ 607 (706)
..+.|+.++.. ++.. ...+.+. -.....+++ .++|.+.++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 56789998865 2321 1222221 123667888 566666666666788999985
Q ss_pred CCCeEEEEeccC------------------CCcEEEEEEc-CCCCEEEEEeCCCcEEEEECC
Q 005254 608 RTGECIATYDKH------------------EDKIWALAVG-KKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 608 ~~~~~~~~~~~~------------------~~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~ 650 (706)
+|...... +. -.....|+++ +++.++++=...+.|+..+++
T Consensus 373 -~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 -EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 66543322 11 1236789999 667666666667778887764
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.39 E-value=0.00025 Score=68.94 Aligned_cols=191 Identities=12% Similarity=0.056 Sum_probs=114.7
Q ss_pred cceEEcCC--CCEEEEeeC-CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc----C-eEEEEECCCCeE
Q 005254 23 GPLVVSSD--GSFIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS----R-EIRVWDLSTLKC 94 (706)
Q Consensus 23 ~~~~~s~d--g~~l~~~~~-~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d----~-~i~iwd~~~~~~ 94 (706)
..|+++|+ +..|+++.. +.|+.+|+.+++..... ........++++++|+ |..+... . .+...+...+..
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTC
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCee
Confidence 37999985 444444444 78999999888765544 3445679999999999 4444431 1 233333322111
Q ss_pred -EEEeeccCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-e-CCCCcEEEEEEcCCCCceEEEEEecCCeE
Q 005254 95 -LRSWKGHDGPAIGMACHP-SGGLLATAGADRKVLVWDVDGGFCTHYF-K-GHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 95 -~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 170 (706)
...+. .......++++| ++.+.++-..++.|+.++..++.....+ . +.......++|+|+++. ++++-...+.|
T Consensus 220 ~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~-LYvad~~~~~I 297 (433)
T 4hw6_A 220 ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW-AYIIYNGKHCI 297 (433)
T ss_dssp CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE-EEEEETTTTEE
T ss_pred cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE-EEEEeCCCCEE
Confidence 01122 234456789999 6665555556788999999877652222 2 12223357999999874 34555567889
Q ss_pred EEEECC--CCee--EEEeecc---------------cceEEEEEE---------ecCCCEEEEEeCCCEEEEEeC
Q 005254 171 RVWDLL--AKKC--VATLDKH---------------FSRVTSMAI---------TSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 171 ~vwd~~--~~~~--~~~~~~~---------------~~~v~~~~~---------~~~~~~l~~~~~dg~i~~w~~ 217 (706)
+.+++. ++.. ...+.+. -.....+++ .++|.+.++-...+.|+.++.
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 998865 2321 1122111 123567888 566665555556678888874
No 294
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.37 E-value=0.0011 Score=58.95 Aligned_cols=203 Identities=12% Similarity=0.192 Sum_probs=139.4
Q ss_pred ccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC-CeEEEEeec
Q 005254 22 GGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST-LKCLRSWKG 100 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~ 100 (706)
+.+..++|..+.||.-.+..+.|+|+++.+.+....- ...|.--.|-.+. .|+-.+. ..|+-|+++. ..++..+.-
T Consensus 69 AdsAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT~-taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 69 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp CSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEEEEES-SEEEEEESSTTCCCEEEEEC
T ss_pred cceeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEEEEcC-CcEEEEcccCCCCCceeeec
Confidence 3467789999999999988999999999988877664 4577777777554 4554443 4799999974 356666665
Q ss_pred c----CCCeEEEEECCCCCEEEEecC-------CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCC-ceEEEEEec--
Q 005254 101 H----DGPAIGMACHPSGGLLATAGA-------DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTD-KSLLFSGSD-- 166 (706)
Q Consensus 101 ~----~~~v~~~~~s~~~~~l~~~~~-------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~-- 166 (706)
| ...|..-..+++.++++..+- .|.+.+|+.+.+. -+.+.+|.+....+.+..+.. ..++..+..
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~ 224 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 224 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEET
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 4 357888889999999887652 4788999988664 455677766554444432222 222333322
Q ss_pred -CCeEEEEECCCC---e------eEEEee---cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 167 -DATVRVWDLLAK---K------CVATLD---KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 167 -dg~i~vwd~~~~---~------~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
.+.+++-++... . .+..+- ...+-..+|..++.-..++..+.-|.+.+||+.++.++..-..
T Consensus 225 ~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrI 299 (365)
T 2xzh_A 225 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 299 (365)
T ss_dssp TEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEecc
Confidence 257888887432 1 111111 1234456788888888999999999999999999887765443
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00045 Score=67.07 Aligned_cols=252 Identities=11% Similarity=0.035 Sum_probs=144.1
Q ss_pred EEEeeeeeec-CCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC---CcCeEEEEE-------ecCCCeEEEEecCCC---
Q 005254 399 VLCLDTCALS-SGKILIVTGSKDNSVRLWDSESRCCVGVGTGH---MGAVGAVAF-------SKKLQNFLVSGSSDH--- 464 (706)
Q Consensus 399 i~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~~l~~~~~d~--- 464 (706)
...+. +.| +...++++....+.|++.|..++......... ......++| ++++..++++...++
T Consensus 141 p~~la--~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLA--FDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEE--EETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCEEE--EccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 44554 666 35554555555578999999988777655432 235889999 999884444444432
Q ss_pred ---eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC-CCEEEEeeCCCcEEEEeCC-------CccE-----
Q 005254 465 ---TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLP-------DLVS----- 528 (706)
Q Consensus 465 ---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~-------~~~~----- 528 (706)
.|.+++........ ..... ..... ......++++|+ +.++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~-~~~~~---~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFD-DRSDI---QLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp GEEEEEEEECCTTSCCS-TTSCE---EEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred cCceEEEEecCCCCcee-ecccc---eeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 24555422211100 00000 11111 224567889995 5555566677889999987 4443
Q ss_pred ------EEE-Ee-ecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcC--CCce--EEEEeec---c------------cC
Q 005254 529 ------VVT-FR-GHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSIS--DGSC--LKTFEGH---T------------SS 580 (706)
Q Consensus 529 ------~~~-~~-~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~--~~~~--~~~~~~~---~------------~~ 580 (706)
... +. +.......++|+|++++|+.+ ...+.|+.++.. .+.. ...+-+. . ..
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 122 11 223446799999999965544 556788886653 2221 1233221 0 12
Q ss_pred EE-EEEEE-------eCCCEEEEEeCCCCEEEEECCCCeEEEEeccC------------------------CCcEEEEEE
Q 005254 581 VL-RASFL-------TRGAQIVSCGADGLVKLWTVRTGECIATYDKH------------------------EDKIWALAV 628 (706)
Q Consensus 581 i~-~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~v~~~~~ 628 (706)
.. .+... ++|.+.++=..++.|+.++ .+|.. .++-+. -.....|++
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 34 34443 4555666666678899998 46643 333221 123678999
Q ss_pred cCC-CCEEEEEeCCCcEEEEECCchhHHHHHH
Q 005254 629 GKK-TEMFATGGSDALVNLWHDSTAAEREEAF 659 (706)
Q Consensus 629 s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 659 (706)
+++ +.+.++=.....|+.++++.....+...
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~~~~~~~ 483 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEENVAGDE 483 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC------
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCcccccCC
Confidence 997 7666666677889999998876655443
No 296
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.35 E-value=0.0066 Score=66.69 Aligned_cols=570 Identities=12% Similarity=0.054 Sum_probs=283.8
Q ss_pred cceEEcCCCCEEEEeeC-CeEEEEEccCC--------eEEEeecCCCccEEEEEEccC----CCEEEEE---eccCeEEE
Q 005254 23 GPLVVSSDGSFIACACG-ESINIVDLSNA--------SIKSTIEGGSDTITALALSPD----DKLLFSS---GHSREIRV 86 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~-~~i~i~d~~~~--------~~~~~l~~~~~~i~~l~~s~~----~~~l~s~---~~d~~i~i 86 (706)
.++++-.+| +|..|+. +.=.+|.+... +.+..+. .-++|..++.... ...|+++ +.+|.+++
T Consensus 330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~-N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~ 407 (1158)
T 3ei3_A 330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFT-NLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 407 (1158)
T ss_dssp SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEEC-CCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEE
T ss_pred cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeeec-CcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEE
Confidence 467777777 4445543 34344444322 3345554 4578998888642 2345544 34788888
Q ss_pred EECCCC-eEEEEeec-cCCCeEEEEEC---CCCCEEEEecCCCcEEEEECCCCeEEEEee--CCC---CcEEEEEEcCCC
Q 005254 87 WDLSTL-KCLRSWKG-HDGPAIGMACH---PSGGLLATAGADRKVLVWDVDGGFCTHYFK--GHK---GVVSSILFHPDT 156 (706)
Q Consensus 87 wd~~~~-~~~~~~~~-~~~~v~~~~~s---~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~---~~v~~~~~~~~~ 156 (706)
..-.=+ +.+..+.- .-..++.+... ....||+....+.+ .|+.+... .+.... +-. ..+.+-.+ ++
T Consensus 408 lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l-~~- 483 (1158)
T 3ei3_A 408 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNV-AH- 483 (1158)
T ss_dssp EEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEE-TT-
T ss_pred EecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEc-CC-
Confidence 753211 22222211 22445555433 23568887766655 56665322 222221 111 11222222 22
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEEEeeccc-ceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcc--eeeecCcceee
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC--KLTVPTYEMVE 233 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~--~~~~~~~~~~~ 233 (706)
+. ++=....+ |++.+...+..+..+.... ..|...+.. +..++.+. ++.+..+++.+++. .........+.
T Consensus 484 ~~--ivQVt~~~-Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evs 557 (1158)
T 3ei3_A 484 QQ--LIQITSAS-VRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVA 557 (1158)
T ss_dssp TE--EEEEESSC-EEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEE
T ss_pred Ce--EEEEecCE-EEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceE
Confidence 22 44444444 7888876655665554332 356666554 34666664 67888888765432 22233344555
Q ss_pred eEEeeCCCCCcccccccccchhhhccccccceEEEEecC-CCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEE
Q 005254 234 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE-RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV 312 (706)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (706)
++...+.... ......++.+.. |++++++++++........... ...+..+.-..+
T Consensus 558 cl~i~~~~~~-----------------~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~------~~~p~si~l~~~ 614 (1158)
T 3ei3_A 558 CLDITPLGDS-----------------NGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG------EIIPRSILMTTF 614 (1158)
T ss_dssp EEECCCCSSS-----------------TTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS------SCCEEEEEEEEE
T ss_pred EEEeecCCCC-----------------cccccEEEEEECCCCEEEEEECCCCCeEEEEECCC------CCCCcEEEEEEe
Confidence 5554432110 011235666664 9999999998653332221100 011122222222
Q ss_pred ccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee
Q 005254 313 LPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL 392 (706)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~ 392 (706)
....++.++..||.+..+.+..... ... .......+. .++ .+...+..+..-+.+..+....+|.-.. +....
T Consensus 615 -~~~~~L~igl~dG~l~~~~~d~~tg-~l~-d~r~~~LG~-~pv-~L~~~~~~~~~~V~a~s~rp~liy~~~~-~l~~s- 687 (1158)
T 3ei3_A 615 -ESSHYLLCALGDGALFYFGLNIETG-LLS-DRKKVTLGT-QPT-VLRTFRSLSTTNVFACSDRPTVIYSSNH-KLVFS- 687 (1158)
T ss_dssp -TTEEEEEEEETTSEEEEEEECTTTC-CEE-EEEEEECCS-SCC-EEEEEESSSCEEEEEESSSCEEEEESSS-SEEEE-
T ss_pred -CCCcEEEEEeCCCeEEEEEEcCCCC-ccc-cceeEEcCC-Cce-EEEEEeeCCceeEEEECCCCEEEEEcCC-ceEEe-
Confidence 3445688889999998887654221 111 111122222 222 2222222333333333344444444332 21111
Q ss_pred eCCcceEEEeeeeeecC--CCEEEEEeeCCCcEEEEeCCCce--EEEEEeCCCcCeEEEEEecCCCeEEEEecCC-----
Q 005254 393 AGHSEIVLCLDTCALSS--GKILIVTGSKDNSVRLWDSESRC--CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD----- 463 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----- 463 (706)
.-....+..+.. |... .+. ++.. .++.+++..+.+-. .++.++ -...+..++++|..+.+.+..+..
T Consensus 688 ~l~~~~v~~~~~-F~se~~~~g-~v~~-~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~ 763 (1158)
T 3ei3_A 688 NVNLKEVNYMCP-LNSDGYPDS-LALA-NNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDT 763 (1158)
T ss_dssp EBSSSCCCEEEE-ECCSSSTTE-EEEE-CSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECS
T ss_pred ccChHHhceEec-cCcccCCCc-EEEE-cCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEecccccc
Confidence 111122222221 2211 223 3333 34558887765322 233333 346788899999877444433221
Q ss_pred -Ce------------------------------------------EEEEEecCCCCCCCcccccceeEEE-eecCcceEE
Q 005254 464 -HT------------------------------------------IKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINS 499 (706)
Q Consensus 464 -~~------------------------------------------i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 499 (706)
+. |++.|-.+ +...... ......+.+
T Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t----------~~~i~~~~l~~nE~~~s 833 (1158)
T 3ei3_A 764 SGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHT----------FEVLHAHQFLQNEYALS 833 (1158)
T ss_dssp SSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTT----------CCEEEEEECCTTEEEEE
T ss_pred ccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCC----------CeEEEEEeCCCCcceEE
Confidence 10 11111100 0011000 111222444
Q ss_pred EE---EcCC-CCEEEEee----------CCCcEEEEeCCCccEEEEE-eecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 500 LA---VAPN-DSLVCTGS----------QDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 500 ~~---~s~~-~~~l~~~~----------~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
++ |..+ ..++++|+ ..|.|.+|++..++..... ....++|++++-- +|++|+.. ...|++|+
T Consensus 834 v~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~ 910 (1158)
T 3ei3_A 834 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYE 910 (1158)
T ss_dssp EEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred EEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEE
Confidence 44 3222 46888886 3478999998754333222 2256788888744 35444433 36799999
Q ss_pred cCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEE--ECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 565 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW--TVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 565 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
+...+.++.-..+-..+..+.....+++++.|+.-..|.+. +...++....-+ .+...++++.|-.++ .++.+..+
T Consensus 911 l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~ 989 (1158)
T 3ei3_A 911 WTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENA 989 (1158)
T ss_dssp ECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETT
T ss_pred CCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCC
Confidence 98665444111122223334444567899999888777665 444555443333 456678888886554 67778999
Q ss_pred CcEEEEECCch
Q 005254 642 ALVNLWHDSTA 652 (706)
Q Consensus 642 g~i~vw~~~~~ 652 (706)
|.+.+.+.++.
T Consensus 990 gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 990 FNLFVCQKDSA 1000 (1158)
T ss_dssp SEEEEEEECTT
T ss_pred CcEEEEecCCC
Confidence 99999988764
No 297
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.34 E-value=0.00042 Score=63.17 Aligned_cols=198 Identities=11% Similarity=0.188 Sum_probs=127.3
Q ss_pred EEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecC----CCe--E-EEEecC--CCeEEEEEecCCCCCCCccccc
Q 005254 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK----LQN--F-LVSGSS--DHTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~-l~~~~~--d~~i~i~~~~~~~~~~~~~~~~ 484 (706)
++.....+-+.+||+ +++.+..+.. +.+..+..-|. ++. + +++... +++|.+|++.............
T Consensus 43 ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp EEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred EEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 666677789999999 8888887753 66777777663 111 2 333334 5899999885322110000000
Q ss_pred ceeEEEeecCcceEEEEE--cCC-CC-EEEEeeCCCcEEEEeCC-------CccEEEEEeecCCcEEEEEEccCCCEEEE
Q 005254 485 KAKAVVAAHGKDINSLAV--APN-DS-LVCTGSQDRTACVWRLP-------DLVSVVTFRGHKRGIWSVEFSPVDQVVIT 553 (706)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~--s~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 553 (706)
.. . ....-..+..+++ +|. ++ ++++...+|.+..|++. +.+.++++.. ...+..+...+....|+.
T Consensus 120 ~~-p-v~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 120 DH-P-IATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp TS-C-EECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred cc-C-cCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence 00 0 0011144566776 774 43 67788889999999882 3356666664 457889999998899999
Q ss_pred ecCCCcEEEEEcC-----CCceEEEEe-ecc-cCEEEEEEE--eCCC-EEEEEe-CCCCEEEEECC-CCeEEEEec
Q 005254 554 ASGDKTIKIWSIS-----DGSCLKTFE-GHT-SSVLRASFL--TRGA-QIVSCG-ADGLVKLWTVR-TGECIATYD 617 (706)
Q Consensus 554 ~~~dg~i~iwd~~-----~~~~~~~~~-~~~-~~i~~~~~s--~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~~~~ 617 (706)
+-++.-|..++.+ +++.+..+. ++- ..+..|++- ++++ ||++.+ .+..+.+||.. +.+.+..+.
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 9998777777754 344554442 222 367888884 4555 676666 56799999997 677777774
No 298
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.28 E-value=0.0027 Score=59.09 Aligned_cols=202 Identities=11% Similarity=0.189 Sum_probs=139.2
Q ss_pred ccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC-CeEEEEeec
Q 005254 22 GGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST-LKCLRSWKG 100 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~ 100 (706)
..+..++|..+.||.-.+..+.|+|+++.+.+....-. ..|.--.|-.+. .|+-.+ +..|+-|++.. ..++..+.-
T Consensus 68 AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 68 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp CSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred cceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheec
Confidence 34678999999999999889999999999888776643 456666665543 455554 34899999974 356666665
Q ss_pred c----CCCeEEEEECCCCCEEEEec-------CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCc-eEEEEEec--
Q 005254 101 H----DGPAIGMACHPSGGLLATAG-------ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK-SLLFSGSD-- 166 (706)
Q Consensus 101 ~----~~~v~~~~~s~~~~~l~~~~-------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~-- 166 (706)
| ...|..-..+++.++++..| ..|.+.+|+.+.+. -+.+.+|.+....+.+..+... .++..+..
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECST
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 4 45788888999999988754 24788999988664 4456777766655554332222 23333333
Q ss_pred -CCeEEEEECCCC---e-----eEEEe--e--cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 167 -DATVRVWDLLAK---K-----CVATL--D--KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 167 -dg~i~vwd~~~~---~-----~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
.+.+++-++... . ....+ + ...+-..+|..++.-..++..+.-|.+.+||+.++.++..-.
T Consensus 224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence 278888887432 1 11111 1 123445678888888899999999999999999988776544
No 299
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.22 E-value=6.3e-05 Score=79.52 Aligned_cols=192 Identities=10% Similarity=0.058 Sum_probs=111.6
Q ss_pred CeEEEEEe-cCCCeEEEEecCCC----eEEEEEecCC-CCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-
Q 005254 443 AVGAVAFS-KKLQNFLVSGSSDH----TIKVWSFDGL-SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD- 515 (706)
Q Consensus 443 ~v~~~~~~-~~~~~~l~~~~~d~----~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d- 515 (706)
.+...+|| |||+.++++...+| .|+++|+.++ .... . .+. .....++|+|||+.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-------~--~~~---~~~~~~~WspDg~~l~y~~~d~ 242 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-------D--KVS---GTNGEIVWGPDHTSLFYVTKDE 242 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-------C--CEE---EECSCCEECSSTTEEEEEEECT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-------c--ccc---CceeeEEEecCCCEEEEEEECC
Confidence 56788999 99985555554443 4999998876 3110 0 011 113568899999888877665
Q ss_pred ----CcEEEEeCCCcc--EEEEEe-ecCCcEEEEEEccCCCEEEEecC---CCcEEEEEcCCCc-eE--EEEe-ecccCE
Q 005254 516 ----RTACVWRLPDLV--SVVTFR-GHKRGIWSVEFSPVDQVVITASG---DKTIKIWSISDGS-CL--KTFE-GHTSSV 581 (706)
Q Consensus 516 ----g~i~i~d~~~~~--~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~-~~--~~~~-~~~~~i 581 (706)
..|+++++.++. ....+. ........+.|||||++|+.... ...|+++|+.++. .. ..+. ......
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR 322 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence 258888887763 223333 22334678899999999887653 3468889987752 22 3332 233444
Q ss_pred EEEEEEeCCCEEEEEe-CC----CCEEEEECCCCeEEEE-eccCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 582 LRASFLTRGAQIVSCG-AD----GLVKLWTVRTGECIAT-YDKHED--KIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~-~d----g~i~iwd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
..+.|+. |+.|+..+ .+ ..|..+|+.++..... +-.|.. .+..+.+. .+.++++...+|...+|-
T Consensus 323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 4444443 55554443 33 2577777765321122 223333 34555554 234556677778655554
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.19 E-value=0.0043 Score=57.89 Aligned_cols=268 Identities=10% Similarity=0.041 Sum_probs=141.2
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee----CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA----GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 429 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 429 (706)
..+.++.+.+ .+..+++ ...+.|. .....++.-.... .....+..+. +.+ +..++. +..+.|.. ...
T Consensus 36 ~~~~~v~~~~-~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~--~~~--~~~~~~-g~~g~i~~-S~D 106 (327)
T 2xbg_A 36 ATILDMSFID-RHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVS--FQG--NEGWIV-GEPPIMLH-TTD 106 (327)
T ss_dssp SCEEEEEESS-SSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEE--EET--TEEEEE-EETTEEEE-ESS
T ss_pred CcEEEEEECC-CCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEE--ecC--CeEEEE-ECCCeEEE-ECC
Confidence 4566776654 3344444 4455543 3333332211111 1234566665 544 443444 45565544 222
Q ss_pred CceEEEEEe---CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 430 SRCCVGVGT---GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 430 ~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
.++.-.... .....+..+.+.+++. +++.+ .++.| |....... . -..........+..+++.+++
T Consensus 107 gG~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v--~~S~DgG~------t--W~~~~~~~~~~~~~~~~~~~~ 174 (327)
T 2xbg_A 107 GGQSWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGAI--YRTKDSGK------N--WQALVQEAIGVMRNLNRSPSG 174 (327)
T ss_dssp TTSSCEECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCCE--EEESSTTS------S--EEEEECSCCCCEEEEEECTTS
T ss_pred CCCCceECccccCCCCCeEEEEEECCCC-EEEEe-CCccE--EEEcCCCC------C--CEEeecCCCcceEEEEEcCCC
Confidence 232222221 2234567787777654 44444 45543 33322110 1 112222334568889999999
Q ss_pred CEEEEeeCCCcEEEEeC--CCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee----cccC
Q 005254 507 SLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG----HTSS 580 (706)
Q Consensus 507 ~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~ 580 (706)
.+++++...+..+-.|- .+.+.+. ......+..+++.+++..++. +.+|.+++.+...++.-..+.. +...
T Consensus 175 ~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~ 251 (327)
T 2xbg_A 175 EYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVG 251 (327)
T ss_dssp CEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSC
T ss_pred cEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcc
Confidence 88877654433333442 2333332 234567889999998876654 5678777764322332222221 1235
Q ss_pred EEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec---cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 581 VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 581 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+..+.+.+++..++++ .+|.+ .+....|+.-..+. .+...+.++.|.+++. +++++.+|.|.-++
T Consensus 252 ~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp EEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred eEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 7888898887766665 46766 34445554433343 2345678888875554 66677899776655
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=0.0036 Score=60.85 Aligned_cols=253 Identities=11% Similarity=0.029 Sum_probs=142.6
Q ss_pred eeeEeeEeCC-CCcEEEEEecCCcEEEEeCCCceeeEeeeCCc---ceEEEeeeee-------ecCCCEEEEEeeCCC--
Q 005254 355 EILDLKFLGE-EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS---EIVLCLDTCA-------LSSGKILIVTGSKDN-- 421 (706)
Q Consensus 355 ~v~~~~~~~~-~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~-------~~~~~~~l~~~~~dg-- 421 (706)
....+++.|. ++.++++....+.|++.|+..+.......... .....++ + .++++.++++-..++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia--~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIA--FNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEE--ECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEE--EeecccccCCCCCEEEEEeCCCCCc
Confidence 4556777774 44555555555789999999887766554322 2456666 7 788887455544442
Q ss_pred ----cEEEEeCCC-ceEE-----EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEec-------CCCC-CCCcccc
Q 005254 422 ----SVRLWDSES-RCCV-----GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD-------GLSD-DAEQPMN 483 (706)
Q Consensus 422 ----~i~i~d~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~-------~~~~-~~~~~~~ 483 (706)
.+.+++... +... ..+. .......++++|++..++++-..++.|..+|+. .+.. ....+..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 266665333 1211 1222 123445788899766677788888999999987 3321 0000000
Q ss_pred ---cceeEEEeecCcceEEEEEcCCCCEEEEe-eCCCcEEEEeCC--CccE--EEEEeec---------------CCcEE
Q 005254 484 ---LKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLP--DLVS--VVTFRGH---------------KRGIW 540 (706)
Q Consensus 484 ---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~--~~~~--~~~~~~~---------------~~~v~ 540 (706)
.... ...........++++|+|++|.++ +....|+.++.. .+.. ...+-+. -....
T Consensus 297 ~g~~~~l-~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 297 PNTFKQL-FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TTTEEEE-EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccccee-EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 0011 112223456899999999965554 456778886543 3221 1222221 01234
Q ss_pred -EEEEc-------cCCCEEEEecCCCcEEEEEcCCCceEEEEeec------------------------ccCEEEEEEEe
Q 005254 541 -SVEFS-------PVDQVVITASGDKTIKIWSISDGSCLKTFEGH------------------------TSSVLRASFLT 588 (706)
Q Consensus 541 -~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~i~~~~~s~ 588 (706)
.++.. +++.++++=...+.|+.++ .++ .+.++-+. -.....+++.+
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 44554 4566666666778899998 456 34444332 02356788887
Q ss_pred C-CCEEEEEeCCCCEEEEECCCCeEE
Q 005254 589 R-GAQIVSCGADGLVKLWTVRTGECI 613 (706)
Q Consensus 589 ~-~~~l~~~~~dg~i~iwd~~~~~~~ 613 (706)
+ |.+.++=..+..|+.+++.....+
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCEEEEEeCCCCEEEEEECCCCccc
Confidence 6 554454445567777777655444
No 302
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.15 E-value=1.1e-05 Score=83.75 Aligned_cols=240 Identities=10% Similarity=0.014 Sum_probs=137.6
Q ss_pred CCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC----ceEEEEEeCCCcCeEEEEEe
Q 005254 375 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAFS 450 (706)
Q Consensus 375 ~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~ 450 (706)
...|+..++........+.... .+..++ +.+.++.++++-...+.|+.+++.. ......+.........+++.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~-~p~gla--~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLR-NVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCT-TCCCCE--EETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred ccceEEEeCCCCcceeeeccCc-ceEEEc--cccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 3577778877665543333322 334555 6777777555656678899998875 22222222222345678888
Q ss_pred cCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC--CCcEEEEeCCCccE
Q 005254 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ--DRTACVWRLPDLVS 528 (706)
Q Consensus 451 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~ 528 (706)
+.+..++++-...+.|.++++.... ..............+++.|.+.+|+.... .+.|..+++.....
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~----------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~ 531 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVK----------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 531 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCC----------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC
T ss_pred eeCCcEEEEeccCCeEEEEecCCCc----------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe
Confidence 6656566666677889998876531 11112222344678899997665555443 26787777653322
Q ss_pred EEEEeecCCcEEEEEEccCCCEEE-EecCCCcEEEEEcCCCceEEEEee---cccCEEEEEEEeCCCEEEEEeCCCCEEE
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVI-TASGDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKL 604 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i 604 (706)
...+...-.....|+|+|++..|+ +-...+.|.++++.... ...+.. .......+++..+ ..+++....+.|..
T Consensus 532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~ 609 (699)
T 1n7d_A 532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFS 609 (699)
T ss_dssp CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEE
T ss_pred eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEE
Confidence 222222233456899999765554 44556789999986433 333321 1122344555443 34455556689999
Q ss_pred EECCCCeEEEEeccCCCcEEEEEEc
Q 005254 605 WTVRTGECIATYDKHEDKIWALAVG 629 (706)
Q Consensus 605 wd~~~~~~~~~~~~~~~~v~~~~~s 629 (706)
++..+|+.+..+.......+.|++.
T Consensus 610 ~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 610 ANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp EETTTEEEEECCCTTCSSCCCCCBC
T ss_pred EEccCCCceEEeecCCCCCcEEEEe
Confidence 9998998887775433334444443
No 303
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.12 E-value=0.00096 Score=62.34 Aligned_cols=184 Identities=10% Similarity=0.063 Sum_probs=112.9
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCe-EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEEC--CCCeEEEEeecc
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNAS-IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL--STLKCLRSWKGH 101 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~-~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~ 101 (706)
+++.++++.++++..+.|.. ....++ -.....++...+.+++++|++.+++.+...+..+-+|- .+.+.+. ...
T Consensus 127 i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~ 203 (327)
T 2xbg_A 127 IKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTT 203 (327)
T ss_dssp EEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCS
T ss_pred EEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCC
Confidence 67777787777765554432 223343 22223455668999999999988877654444444442 3334432 234
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeC----CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC
Q 005254 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG----HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 177 (706)
Q Consensus 102 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 177 (706)
...+..+++++++..++++ .+|.+++.+.+.++.-..+.. +...+..+++.+++. ++.++.+|.| ++..+.
T Consensus 204 ~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~---~~~~g~~g~i-~~S~Dg 278 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE---VWLAGGAGAL-LCSQDG 278 (327)
T ss_dssp SSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC---EEEEESTTCE-EEESST
T ss_pred CCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE---EEEEeCCCeE-EEeCCC
Confidence 5788999999998866554 568777765443443332221 234588999988654 4455557766 455555
Q ss_pred CeeEEEeec---ccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 178 KKCVATLDK---HFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 178 ~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
++.-..+.. ....+.++.|.+++ .+++++.+|.|.-++-
T Consensus 279 G~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 279 GQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp TSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred CcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 655444432 23567888887555 5777778998777653
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.06 E-value=0.0058 Score=54.57 Aligned_cols=162 Identities=10% Similarity=0.113 Sum_probs=99.4
Q ss_pred eecCCCEEEEEee------CCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC--CeEEEEecC---CCeEEEEEecCC
Q 005254 406 ALSSGKILIVTGS------KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL--QNFLVSGSS---DHTIKVWSFDGL 474 (706)
Q Consensus 406 ~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~---d~~i~i~~~~~~ 474 (706)
.+++.++++++|- -.|.+.+|..+.+. -+.+.+|......+.+..+. ..+++.+.. .+++++.++...
T Consensus 159 ~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~ 237 (365)
T 2xzh_A 159 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 237 (365)
T ss_dssp ECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSC
T ss_pred ECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence 6677777666653 23678889887653 33456665544443332211 112332222 368899888543
Q ss_pred CCCCCcccccceeEEEee---cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEE
Q 005254 475 SDDAEQPMNLKAKAVVAA---HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 551 (706)
.. ...+...+....+.. ...-..++.+|+.-..+..-+.-|.+++||+.++.++..-+-....|..-+-+....-+
T Consensus 238 ~~-~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi 316 (365)
T 2xzh_A 238 PT-GNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGI 316 (365)
T ss_dssp CT-TCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEE
T ss_pred CC-CCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcE
Confidence 11 112222222222222 24456788999988899999999999999999999999888777777666655544445
Q ss_pred EEecCCCcEEEEEcCCCc
Q 005254 552 ITASGDKTIKIWSISDGS 569 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~~~ 569 (706)
+.....|.|.--.++..+
T Consensus 317 ~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 317 IGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEETTCEEEEEEECTTT
T ss_pred EEEcCCCEEEEEEECccc
Confidence 555577777666665443
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.02 E-value=0.0038 Score=58.89 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=62.0
Q ss_pred cceEEcCCCCEEEEeeCCeEEEEEccCCeEE--Eeec---CCCccEEEEEEccC---CCEEEEEec-c-----CeEEEEE
Q 005254 23 GPLVVSSDGSFIACACGESINIVDLSNASIK--STIE---GGSDTITALALSPD---DKLLFSSGH-S-----REIRVWD 88 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~--~~l~---~~~~~i~~l~~s~~---~~~l~s~~~-d-----~~i~iwd 88 (706)
..|+|.|||+++++-..+.|.+++ +++.. ..+. ........|+|+|+ +.+|.++.. . +.|..++
T Consensus 34 ~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~ 111 (352)
T 2ism_A 34 WALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLR 111 (352)
T ss_dssp EEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEE
T ss_pred eEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEE
Confidence 479999999977776667899998 44422 2221 22456799999998 555555433 2 6788888
Q ss_pred CCCCe-----E-EEEee---ccCCCeEEEEECCCCCEEEEec
Q 005254 89 LSTLK-----C-LRSWK---GHDGPAIGMACHPSGGLLATAG 121 (706)
Q Consensus 89 ~~~~~-----~-~~~~~---~~~~~v~~~~~s~~~~~l~~~~ 121 (706)
...+. . +..+. +.......++|.|||.+.++.+
T Consensus 112 ~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 112 HLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp ECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred eCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 87541 1 22233 1112336899999997666643
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.98 E-value=0.0014 Score=60.69 Aligned_cols=220 Identities=12% Similarity=0.082 Sum_probs=110.0
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC-----CeEEEEEecCCCCCCCcccccceeEEEeecCc
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (706)
..+.+||..+.+...............+...++. +++.|+.+ ..+.+||........ +...........
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-l~v~GG~~~~~~~~~~~~~d~~~~~~~~-----W~~~~~~p~~r~ 104 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDR-IYVIGGYDGRSRLSSVECLDYTADEDGV-----WYSVAPMNVRRG 104 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTE-EEEECCBCSSCBCCCEEEEETTCCTTCC-----CEEECCCSSCCB
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCE-EEEEcCCCCCccCceEEEEECCCCCCCe-----eEECCCCCCCcc
Confidence 3688889887764443221111111122223333 67777654 457888876543000 111111111111
Q ss_pred ceEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecCC-----CcEEEE
Q 005254 496 DINSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIW 563 (706)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw 563 (706)
....+. .++++++.|+.++ .+.+||+.+.+-... +......-..+. .+++.++.|+.+ ..+.+|
T Consensus 105 ~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 180 (301)
T 2vpj_A 105 LAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKY 180 (301)
T ss_dssp SCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEE
T ss_pred ceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEE
Confidence 112222 2677778877543 588899877643332 221111122222 267777777654 458899
Q ss_pred EcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC-----CCEEEEECCCCeEEEEe--ccCCCcEEEEEEcCCCCEEE
Q 005254 564 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIATY--DKHEDKIWALAVGKKTEMFA 636 (706)
Q Consensus 564 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~ 636 (706)
|+.+.+-...-..........+...+++.++.|+.+ ..+.+||+.+.+-...- .........+.+ ++++++
T Consensus 181 d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v 258 (301)
T 2vpj_A 181 DPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYA 258 (301)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred eCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEE
Confidence 987764432211111111112223366777777764 46899999887643322 211112222333 677777
Q ss_pred EEeCC-----CcEEEEECCch
Q 005254 637 TGGSD-----ALVNLWHDSTA 652 (706)
Q Consensus 637 ~~~~d-----g~i~vw~~~~~ 652 (706)
.|+.+ ..+.+||+.+.
T Consensus 259 ~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 259 IAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp ECCBCSSSBEEEEEEEETTTT
T ss_pred EcCcCCCcccccEEEEcCCCC
Confidence 77765 34677777653
No 307
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.98 E-value=0.0004 Score=64.56 Aligned_cols=148 Identities=12% Similarity=0.121 Sum_probs=101.5
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCC----CccEEEEEEccCCCEEEEEeccCeEEEEECCCCe------
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGG----SDTITALALSPDDKLLFSSGHSREIRVWDLSTLK------ 93 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~----~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~------ 93 (706)
-...+.+|+-++++.++.|+.-++.....-+.++.. -..|..+..||+|++||..+.. .|.|-.+..+.
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCH
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCccc
Confidence 355678999999999999998888744433444432 2268889999999999998765 78888886321
Q ss_pred ------EEEEeec------cCCCeEEEEECC---CCCEEEEecCCCcEEEEECCCCe--EEEEee---------CCCCcE
Q 005254 94 ------CLRSWKG------HDGPAIGMACHP---SGGLLATAGADRKVLVWDVDGGF--CTHYFK---------GHKGVV 147 (706)
Q Consensus 94 ------~~~~~~~------~~~~v~~~~~s~---~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~---------~~~~~v 147 (706)
..+.++- ...+|..+.|+| .+..|++-..|+.|++||+.... +. .+. .....|
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 1122321 257899999999 45689999999999999997521 22 222 233567
Q ss_pred EEEEEcCCCCceEEEEEecCCeEEEE
Q 005254 148 SSILFHPDTDKSLLFSGSDDATVRVW 173 (706)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~dg~i~vw 173 (706)
.+++|.+++-..++++....|.|+-.
T Consensus 183 ~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 88888876555444444466666543
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.97 E-value=3.5e-05 Score=80.15 Aligned_cols=203 Identities=12% Similarity=0.041 Sum_probs=123.4
Q ss_pred cceEEcCCCCEEEEeeC--CeEEEEEccC----CeEEEeecCCCccEEEEEEccCCCEEEEE-eccCeEEEEECCCCeEE
Q 005254 23 GPLVVSSDGSFIACACG--ESINIVDLSN----ASIKSTIEGGSDTITALALSPDDKLLFSS-GHSREIRVWDLSTLKCL 95 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~--~~i~i~d~~~----~~~~~~l~~~~~~i~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~ 95 (706)
.+|+|+++++.|+++.. +.|..+++.+ ......+...-.....|++.+.+..|+.+ ...+.|.+.++......
T Consensus 409 ~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~ 488 (699)
T 1n7d_A 409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 488 (699)
T ss_dssp CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE
T ss_pred EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceE
Confidence 37999998888877754 3799999875 22223332222344678888655444444 45678999998765444
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEE
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 173 (706)
..+.........++++|.+.+|+.... .+.|.+.+++.......+...-.....|+|.|++.. ++++-...+.|..+
T Consensus 489 ~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~-LY~aD~~~~~I~~~ 567 (699)
T 1n7d_A 489 TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR-LYWVDSKLHSISSI 567 (699)
T ss_dssp EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCC-EEEEETTTTEEEEE
T ss_pred EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCE-EEEEecCCCeEEEE
Confidence 333333345678899997766665542 267888877643322222223345678999998665 34444567889999
Q ss_pred ECCCCeeEEEee--cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 174 DLLAKKCVATLD--KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 174 d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
++........+. ........|++..+ .++++....+.|..++..+++.+..+.
T Consensus 568 d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 568 DVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp CSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 986443332222 11223445566543 344455566789999987777666554
No 309
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.96 E-value=0.0055 Score=55.41 Aligned_cols=193 Identities=12% Similarity=0.163 Sum_probs=119.6
Q ss_pred ceEEcCCCCEEEEee--CCeEEEEEccCCeEEE-eecC----C--CccEEEEEE---ccCCCEEEEEec-----------
Q 005254 24 PLVVSSDGSFIACAC--GESINIVDLSNASIKS-TIEG----G--SDTITALAL---SPDDKLLFSSGH----------- 80 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~--~~~i~i~d~~~~~~~~-~l~~----~--~~~i~~l~~---s~~~~~l~s~~~----------- 80 (706)
+++|.+....+.++. .+.|..||..++.... .+.+ . ...+..|.+ .|+++++++...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 588877555666655 4599999987664433 3332 1 125689999 688888776442
Q ss_pred --cCeEEEEECC---CCeEEEEee--cc-----------CCCeEEEEECCCCCEEEEecCC-CcEEEEECCCCeEEEEe-
Q 005254 81 --SREIRVWDLS---TLKCLRSWK--GH-----------DGPAIGMACHPSGGLLATAGAD-RKVLVWDVDGGFCTHYF- 140 (706)
Q Consensus 81 --d~~i~iwd~~---~~~~~~~~~--~~-----------~~~v~~~~~s~~~~~l~~~~~d-~~i~vw~~~~~~~~~~~- 140 (706)
+..|..+|+. +++.+.... .. ......++..++|+.-++++.. +.|...+.+......-+
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~ 176 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAW 176 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeee
Confidence 5789999999 887766544 11 1347899999999988888877 77777776644322211
Q ss_pred eC----CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee--EEEee-cc---cceEEE-EEEecCCCEEE-EEeC
Q 005254 141 KG----HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC--VATLD-KH---FSRVTS-MAITSDGSTLI-SAGR 208 (706)
Q Consensus 141 ~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~-~~---~~~v~~-~~~~~~~~~l~-~~~~ 208 (706)
.. .....+.|+++|++.. |++....|.+..+|+.+... +..-. +. -..... +..-.+|+.|+ +...
T Consensus 177 ~~~~~~~~~G~nGIv~~pdg~~--Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~ 254 (334)
T 2p9w_A 177 ESGNGGQRPGYSGITFDPHSNK--LIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA 254 (334)
T ss_dssp CCCCSSSCCSCSEEEEETTTTE--EEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET
T ss_pred cCCCcccccCcceEEEeCCCCE--EEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC
Confidence 11 1223679999999865 55554499999999875433 21110 11 112333 33345777644 4444
Q ss_pred CCEEEEEeCC
Q 005254 209 DKVVNLWDLR 218 (706)
Q Consensus 209 dg~i~~w~~~ 218 (706)
.+.+.+.+.+
T Consensus 255 ~~~~~l~S~D 264 (334)
T 2p9w_A 255 PYAISFRSWD 264 (334)
T ss_dssp TEEEEEECSS
T ss_pred CCEEEEECCC
Confidence 5555555443
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.96 E-value=0.0015 Score=59.02 Aligned_cols=199 Identities=12% Similarity=0.082 Sum_probs=124.0
Q ss_pred CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec-------CcceEEEEE---cCCCCE
Q 005254 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH-------GKDINSLAV---APNDSL 508 (706)
Q Consensus 439 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~---s~~~~~ 508 (706)
.......+++|.+....++++.-..++|..|+...+. ........ ...+..+.+ .|++++
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~----------~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL 79 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS----------HFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRL 79 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC----------EEEECCTTTCCSSCCSEEEEEEEESSSSSCCEE
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe----------EEEEecCCccccCCCcceeeEEEEeccCCCCcE
Confidence 3344455788888666566666689999999876432 11111111 113578999 688888
Q ss_pred EEEeeC-------------CCcEEEEeCC---CccEEEEEe--ecC-----------CcEEEEEEccCCCEEEEecCC-C
Q 005254 509 VCTGSQ-------------DRTACVWRLP---DLVSVVTFR--GHK-----------RGIWSVEFSPVDQVVITASGD-K 558 (706)
Q Consensus 509 l~~~~~-------------dg~i~i~d~~---~~~~~~~~~--~~~-----------~~v~~~~~s~~~~~l~~~~~d-g 558 (706)
+++... +..+..||+. +++.+.... ... .....++..++|+..++++.. +
T Consensus 80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~ 159 (334)
T 2p9w_A 80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP 159 (334)
T ss_dssp EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC
T ss_pred EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCC
Confidence 876442 5779999998 776665544 211 247899999999999988877 8
Q ss_pred cEEEEEcCCCceEEEEeecc------cCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE--EEEec-c---CCCcEEE-
Q 005254 559 TIKIWSISDGSCLKTFEGHT------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC--IATYD-K---HEDKIWA- 625 (706)
Q Consensus 559 ~i~iwd~~~~~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~-~---~~~~v~~- 625 (706)
.|...+.. ++.+..+.... ...+.+++.|+|+.|++....|.+..+|+.+... +..-. + .......
T Consensus 160 ~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgi 238 (334)
T 2p9w_A 160 AIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKI 238 (334)
T ss_dssp EEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEE
T ss_pred eEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccc
Confidence 77777754 43333332111 1356899999999998887799999999875432 21110 1 1112233
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEE
Q 005254 626 LAVGKKTEM-FATGGSDALVNLWH 648 (706)
Q Consensus 626 ~~~s~~~~~-l~~~~~dg~i~vw~ 648 (706)
+..-.+|+. |++.+..+.+.+.+
T Consensus 239 lp~~~~G~vllV~~~~~~~~~l~S 262 (334)
T 2p9w_A 239 VTVPVGNESVLVGARAPYAISFRS 262 (334)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEC
T ss_pred cccccCCEEEEEEcCCCCEEEEEC
Confidence 333347776 44555555444443
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.92 E-value=0.0017 Score=60.01 Aligned_cols=224 Identities=12% Similarity=0.093 Sum_probs=110.6
Q ss_pred EEEEeeCC----CcEEEEeCCCceEEEEEeCCCcCe-EEEEEecCCCeEEEEecCC-----CeEEEEEecCCCCCCCccc
Q 005254 413 LIVTGSKD----NSVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPM 482 (706)
Q Consensus 413 ~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~ 482 (706)
+++.|+.+ ..+..||..+.+............ .+++. -++. +++.|+.+ ..+.+||.....
T Consensus 18 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-lyv~GG~~~~~~~~~~~~~d~~~~~------- 88 (302)
T 2xn4_A 18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGL-VFAVGGFNGSLRVRTVDSYDPVKDQ------- 88 (302)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE-EEEESCBCSSSBCCCEEEEETTTTE-------
T ss_pred EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-ECCE-EEEEeCcCCCccccceEEECCCCCc-------
Confidence 35555543 357888888776444322111111 12222 2333 67777654 347777765432
Q ss_pred ccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEec
Q 005254 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITAS 555 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~ 555 (706)
+...............+. -++++++.|+.++ .+.+||+.+.+-... +.........+. -+++.++.|+
T Consensus 89 -W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 163 (302)
T 2xn4_A 89 -WTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGG 163 (302)
T ss_dssp -EEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred -eeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeC
Confidence 111110111111112222 2677788887654 477888876643332 111111112222 2567777766
Q ss_pred CC-------CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC-----CCEEEEECCCCeEEEE--eccCCC
Q 005254 556 GD-------KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIAT--YDKHED 621 (706)
Q Consensus 556 ~d-------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~ 621 (706)
.+ ..+.+||+.+.+-...-......-...+...+++.++.|+.+ ..+.+||+.+.+-... +.....
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~ 243 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR 243 (302)
T ss_dssp EETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc
Confidence 43 358899987764332211111111111223367777777764 3689999988764332 211111
Q ss_pred cEEEEEEcCCCCEEEEEeCCC-----cEEEEECCch
Q 005254 622 KIWALAVGKKTEMFATGGSDA-----LVNLWHDSTA 652 (706)
Q Consensus 622 ~v~~~~~s~~~~~l~~~~~dg-----~i~vw~~~~~ 652 (706)
.-..+. .++++++.|+.++ .+.+||+.+.
T Consensus 244 ~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 244 NAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 112222 2677777777654 4788887654
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.90 E-value=0.0022 Score=59.47 Aligned_cols=227 Identities=8% Similarity=0.043 Sum_probs=115.5
Q ss_pred CEEEEEeeC--CCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC----CeEEEEEecCCCCCCCccccc
Q 005254 411 KILIVTGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD----HTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 411 ~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~i~~~~~~~~~~~~~~~~ 484 (706)
+.+++.|+. ...+.+||..+.+....-..........+..-++. +++.|+.+ ..+.+||..... +
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~d~~~~~--------W 82 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNV-VYILGGSQLFPIKRMDCYNVVKDS--------W 82 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTE-EEEECCBSSSBCCEEEEEETTTTE--------E
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCE-EEEEeCCCCCCcceEEEEeCCCCe--------E
Confidence 444666654 35788999988765543221111111112222433 67777654 567777766541 1
Q ss_pred ceeEEEeecCcceEEEEEcCCCCEEEEeeCC------CcEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecC
Q 005254 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQD------RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASG 556 (706)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~ 556 (706)
...............+. -++++++.|+.+ ..+.+||..+.+-... +......-..+. -++++++.|+.
T Consensus 83 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~ 158 (306)
T 3ii7_A 83 YSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGS 158 (306)
T ss_dssp EEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCE
T ss_pred EECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCC
Confidence 11111111111112222 267788888765 4588999887653332 111111112222 25677777653
Q ss_pred ---------CCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC-----CCEEEEECCCCeEEE--EeccCC
Q 005254 557 ---------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIA--TYDKHE 620 (706)
Q Consensus 557 ---------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~~~ 620 (706)
-..+.+||+.+.+-...-..........+..-+++.++.|+.+ ..+.+||+.+.+-.. .+....
T Consensus 159 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 238 (306)
T 3ii7_A 159 LGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG 238 (306)
T ss_dssp ESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB
T ss_pred CCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc
Confidence 3458899988764332211111111112222366777777654 368999998875332 222222
Q ss_pred CcEEEEEEcCCCCEEEEEeCC-----CcEEEEECCch
Q 005254 621 DKIWALAVGKKTEMFATGGSD-----ALVNLWHDSTA 652 (706)
Q Consensus 621 ~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~ 652 (706)
....++.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 22233333 67777888754 45778887654
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.84 E-value=0.02 Score=53.50 Aligned_cols=296 Identities=12% Similarity=0.110 Sum_probs=189.9
Q ss_pred CcEEEEeCCCceeeEeee-CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCC
Q 005254 376 EQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (706)
.++.+.|+.++......+ .....+ .+|..+. ++.-. ...+.++|+++.+.+....-. ..|.--.|-.+.
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~AdsAI------MnP~~~i-iALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~- 117 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPISADSAI------MNPASKV-IALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN- 117 (494)
T ss_dssp CEEEEEETTSTTSCEEEECCCSEEE------ECSSSSC-EEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-
T ss_pred CeEEEEECCCCCcceecccccceee------eCCCCcE-EEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCC-
Confidence 378889988765543222 122222 5566655 55443 779999999999988887654 356566666553
Q ss_pred eEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec----CcceEEEEEcCCCCEEEEeeC-------CCcEEEEeC
Q 005254 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH----GKDINSLAVAPNDSLVCTGSQ-------DRTACVWRL 523 (706)
Q Consensus 455 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~-------dg~i~i~d~ 523 (706)
.|+..+ +..|+-|++..... +...+..| +..|..-..+++.++++..+- .|.+.+|..
T Consensus 118 -~l~lVT-~taVyHWsi~~~s~---------P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~ 186 (494)
T 1bpo_A 118 -TVALVT-DNAVYHWSMEGESQ---------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (494)
T ss_dssp -EEEEEC-SSEEEEEESSSSCC---------CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEES
T ss_pred -eEEEEc-CCeeEEecccCCCC---------chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeec
Confidence 343333 45799999865221 22233222 456888888999998875442 367888987
Q ss_pred CCccEEEEEeecCCcEEEEEEccCC---CEEEEecC---CCcEEEEEcCCC--------ceEEEEe----ecccCEEEEE
Q 005254 524 PDLVSVVTFRGHKRGIWSVEFSPVD---QVVITASG---DKTIKIWSISDG--------SCLKTFE----GHTSSVLRAS 585 (706)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~---dg~i~iwd~~~~--------~~~~~~~----~~~~~i~~~~ 585 (706)
+.. ....+.+|......+.+..+. +.++.+.. .+.+.|-++... +....+. ...+-..++.
T Consensus 187 er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamq 265 (494)
T 1bpo_A 187 DRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 265 (494)
T ss_dssp TTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEE
T ss_pred ccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEE
Confidence 644 445667776555444433211 23333333 268999998543 1111111 1123456788
Q ss_pred EEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHHHHHH---
Q 005254 586 FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKE--- 662 (706)
Q Consensus 586 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--- 662 (706)
.|+.-..+...+.-|.|++||+.++.++..-+-..+.|..-+-.....=++.....|.|.--.++............
T Consensus 266 vs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivpyi~~~l~n~ 345 (494)
T 1bpo_A 266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNP 345 (494)
T ss_dssp EETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHHHHHHTTCCH
T ss_pred ecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccchhhhhhccCCH
Confidence 89888899999999999999999999999888778888777766665556777799999988888887666544211
Q ss_pred --HH-----------HHHhcchhhhhhhccchhHhhheeeecCC
Q 005254 663 --EE-----------AVLRGQELENAVLDADYTKAIQVAFELRR 693 (706)
Q Consensus 663 --~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (706)
.. .-+-.+..+......+|.++.+++.++..
T Consensus 346 ~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~ 389 (494)
T 1bpo_A 346 DLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK 389 (494)
T ss_dssp HHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 00 11123446677788888888888877644
No 314
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.77 E-value=0.028 Score=52.92 Aligned_cols=191 Identities=16% Similarity=0.172 Sum_probs=106.1
Q ss_pred ccceEEcCCCCEEEEeeCCeEEEEEccCCe-EEEee---cCCCccEEEEEEccC---CCEEEEEec----c----CeEEE
Q 005254 22 GGPLVVSSDGSFIACACGESINIVDLSNAS-IKSTI---EGGSDTITALALSPD---DKLLFSSGH----S----REIRV 86 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~-~~~~l---~~~~~~i~~l~~s~~---~~~l~s~~~----d----~~i~i 86 (706)
...|++.|||+++++-..+.|.+++ .+++ .+..+ .........|+++|+ +..|.++.. + +.|..
T Consensus 31 P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r 109 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIR 109 (354)
T ss_dssp EEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEE
T ss_pred CeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEE
Confidence 3479999999977777667899887 4554 22222 122356799999998 555554432 3 67888
Q ss_pred EECCCC-------eEE-EEeec-cCCCeEEEEECCCCCEEEEecC-------------CCcEEEEECCCC---------e
Q 005254 87 WDLSTL-------KCL-RSWKG-HDGPAIGMACHPSGGLLATAGA-------------DRKVLVWDVDGG---------F 135 (706)
Q Consensus 87 wd~~~~-------~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~-------------d~~i~vw~~~~~---------~ 135 (706)
|+.... +.+ ..+.. .......|+|.|||.+.++.+. .+.|.-.+.+.. .
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~ 189 (354)
T 3a9g_A 110 GRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNS 189 (354)
T ss_dssp EEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTC
T ss_pred EEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCC
Confidence 887654 111 22321 1123467999999987776442 145555555432 0
Q ss_pred EEEEeeCCCCcEEEEEEcCCCCceEEEEEec--CC--eEEEEECCCCe------------------eEEEeecccceEEE
Q 005254 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSD--DA--TVRVWDLLAKK------------------CVATLDKHFSRVTS 193 (706)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg--~i~vwd~~~~~------------------~~~~~~~~~~~v~~ 193 (706)
.+. ..++. ....++|.|+... |+++.. ++ .|.+.. .+. .+..+.........
T Consensus 190 ~i~-a~G~r-np~Gla~d~~~g~--l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 190 PIW-SYGHR-NPQGIDWHRASGV--MVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp CEE-EECCS-CCCEEEECTTTCC--EEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred cEE-EEccC-CcceEEEeCCCCC--EEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 111 12333 3467999994344 444332 22 233322 211 22222112245777
Q ss_pred EEEe-------cCCCEEEEEeCCCEEEEEeCCC
Q 005254 194 MAIT-------SDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 194 ~~~~-------~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
++|. .+|.++++.-..+.|...++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 8884 4666666555566777777664
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.76 E-value=0.0048 Score=56.98 Aligned_cols=220 Identities=14% Similarity=0.115 Sum_probs=108.5
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC-----CcEEEEeCCCce---EEEEEeCCCcCeEEE
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD-----NSVRLWDSESRC---CVGVGTGHMGAVGAV 447 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~~~~~v~~~ 447 (706)
..+..||+.+.+-...-..... ...... ... ++.+++.|+.+ ..+.+||..+.+ ...............
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~-r~~~~~-~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~ 107 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRK-RRYVAS-VSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG 107 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSC-CBSCEE-EEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred eEEEEEcCCCCeEEeCCCCChh-hccccE-EEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence 4688899887654332111111 000110 222 34456777654 368899988765 333322111111111
Q ss_pred EEecCCCeEEEEecCC-----CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-----Cc
Q 005254 448 AFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-----RT 517 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~ 517 (706)
+...++. +++.|+.+ ..+.+||..... +...............+. .++++++.|+.+ ..
T Consensus 108 ~~~~~~~-lyv~GG~~~~~~~~~~~~~d~~~~~--------W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~ 176 (301)
T 2vpj_A 108 ATTLGDM-IYVSGGFDGSRRHTSMERYDPNIDQ--------WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNS 176 (301)
T ss_dssp EEEETTE-EEEECCBCSSCBCCEEEEEETTTTE--------EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCC
T ss_pred EEEECCE-EEEEcccCCCcccceEEEEcCCCCe--------EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccce
Confidence 2222444 66666643 357777765431 111111111111112222 267788887755 45
Q ss_pred EEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecCC-----CcEEEEEcCCCceEEEEeecccCEEEEEEEeCC
Q 005254 518 ACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590 (706)
Q Consensus 518 i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~ 590 (706)
+.+||+.+.+-... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-...-..........+...++
T Consensus 177 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 254 (301)
T 2vpj_A 177 VEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRG 254 (301)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred EEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECC
Confidence 88999877644332 1111111222222 56777777764 468999998765432211111111112233367
Q ss_pred CEEEEEeCCC-----CEEEEECCCCe
Q 005254 591 AQIVSCGADG-----LVKLWTVRTGE 611 (706)
Q Consensus 591 ~~l~~~~~dg-----~i~iwd~~~~~ 611 (706)
+.++.|+.++ .+.+||+.+.+
T Consensus 255 ~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 255 RLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEEEcCcCCCcccccEEEEcCCCCe
Confidence 7777777653 57888987765
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.64 E-value=0.019 Score=53.00 Aligned_cols=227 Identities=9% Similarity=0.055 Sum_probs=113.0
Q ss_pred cEEEEEec--CCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC----CcEEEEeCCCceEEEEEeCC
Q 005254 367 QYLAVATN--IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD----NSVRLWDSESRCCVGVGTGH 440 (706)
Q Consensus 367 ~~l~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~ 440 (706)
.+++.|+. ...+..||..+.+-...-..... -..... ... ++.+++.|+.+ ..+.+||..+.+........
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~-~~~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK-RRDAAC-VFW-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCC-CBSCEE-EEE-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcc-cceeEE-EEE-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34444443 35788999887664432111111 001110 122 34457777654 56889999887655443322
Q ss_pred CcCeEEEEEecCCCeEEEEecCC------CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC
Q 005254 441 MGAVGAVAFSKKLQNFLVSGSSD------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514 (706)
Q Consensus 441 ~~~v~~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 514 (706)
.......+..-+++ +++.|+.+ ..+.+||..... +............. +++. -++++++.|+.
T Consensus 90 ~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~--------W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~ 158 (306)
T 3ii7_A 90 TPRDSLAACAAEGK-IYTSGGSEVGNSALYLFECYDTRTES--------WHTKPSMLTQRCSH-GMVE-ANGLIYVCGGS 158 (306)
T ss_dssp SCCBSCEEEEETTE-EEEECCBBTTBSCCCCEEEEETTTTE--------EEEECCCSSCCBSC-EEEE-ETTEEEEECCE
T ss_pred ccccceeEEEECCE-EEEECCCCCCCcEeeeEEEEeCCCCc--------eEeCCCCcCCccee-EEEE-ECCEEEEECCC
Confidence 22222222222444 66777655 457788876542 10110010011111 1222 26677777764
Q ss_pred ---------CCcEEEEeCCCccEEEEE--eecCCcEEEEEEccCCCEEEEecCC-----CcEEEEEcCCCceEE--EEee
Q 005254 515 ---------DRTACVWRLPDLVSVVTF--RGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSCLK--TFEG 576 (706)
Q Consensus 515 ---------dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~ 576 (706)
-..+.+||+.+.+-...- ......-..+.+ ++++++.|+.+ ..+.+||+.+.+-.. .+..
T Consensus 159 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 236 (306)
T 3ii7_A 159 LGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW 236 (306)
T ss_dssp ESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC
T ss_pred CCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC
Confidence 345889998876433221 111111122222 56777777653 358899987764322 1111
Q ss_pred cccCEEEEEEEeCCCEEEEEeCC-----CCEEEEECCCCe
Q 005254 577 HTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGE 611 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 611 (706)
.......+. -+++.++.|+.+ ..+.+||+.+.+
T Consensus 237 ~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 237 KGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 111222222 267777888754 468889998765
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.64 E-value=0.0083 Score=55.36 Aligned_cols=221 Identities=13% Similarity=0.104 Sum_probs=107.2
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC-----CcEEEEeCCCceEEEEEeCCCcCeEEEEEe
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD-----NSVRLWDSESRCCVGVGTGHMGAVGAVAFS 450 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 450 (706)
..+..||+.+.+-...-.... +...... ... ++.+++.|+.+ ..+.+||..+.+...............+..
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~-~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPS-RRCRAGM-VYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSS-CCBSCEE-EEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCc-ccccceE-EEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE
Confidence 457888888765433211111 1000010 112 44457777654 358889988876554432222211111122
Q ss_pred cCCCeEEEEecCCC-----eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-------CcE
Q 005254 451 KKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-------RTA 518 (706)
Q Consensus 451 ~~~~~~l~~~~~d~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-------g~i 518 (706)
-++. +++.|+.++ .+.+||..... +............. +++. -++++++.|+.+ ..+
T Consensus 107 ~~~~-iyv~GG~~~~~~~~~~~~~d~~~~~--------W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~ 175 (302)
T 2xn4_A 107 LNGL-LYAVGGFDGSTGLSSVEAYNIKSNE--------WFHVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTV 175 (302)
T ss_dssp ETTE-EEEEEEECSSCEEEEEEEEETTTTE--------EEEECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCE
T ss_pred ECCE-EEEEcCCCCCccCceEEEEeCCCCe--------EeecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEE
Confidence 2444 666666543 46667765431 11110011111111 2222 266777777643 358
Q ss_pred EEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecCC-----CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCC
Q 005254 519 CVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 591 (706)
Q Consensus 519 ~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 591 (706)
.+||+.+.+-... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-...-..............+++
T Consensus 176 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 253 (302)
T 2xn4_A 176 ECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGL 253 (302)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE
T ss_pred EEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCE
Confidence 8999877643332 1111111222222 57777787754 3689999877643322111111111112233677
Q ss_pred EEEEEeCCC-----CEEEEECCCCeE
Q 005254 592 QIVSCGADG-----LVKLWTVRTGEC 612 (706)
Q Consensus 592 ~l~~~~~dg-----~i~iwd~~~~~~ 612 (706)
.++.|+.++ .+.+||+.+.+-
T Consensus 254 i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 254 LYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred EEEECCcCCCcccccEEEEcCCCCeE
Confidence 778887654 489999987764
No 318
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.49 E-value=0.0059 Score=56.53 Aligned_cols=222 Identities=9% Similarity=0.071 Sum_probs=109.6
Q ss_pred EEEEeeCC----CcEEEEeCCCceEEEEEeCCCcCeE-EEEEecCCCeEEEEecC----C-----CeEEEEEecCCCCCC
Q 005254 413 LIVTGSKD----NSVRLWDSESRCCVGVGTGHMGAVG-AVAFSKKLQNFLVSGSS----D-----HTIKVWSFDGLSDDA 478 (706)
Q Consensus 413 ~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~----d-----~~i~i~~~~~~~~~~ 478 (706)
+++.|+.+ ..+.+||..+.+....-........ +++. -++. +++.|+. + ..+.+||.....-
T Consensus 27 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W-- 102 (308)
T 1zgk_A 27 IYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGL-LYAVGGRNNSPDGNTDSSALDCYNPMTNQW-- 102 (308)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTE-EEEECCEEEETTEEEECCCEEEEETTTTEE--
T ss_pred EEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCE-EEEECCCcCCCCCCeecceEEEECCCCCeE--
Confidence 35555532 3588888887765443221111111 2222 2333 6666665 2 3577777654320
Q ss_pred CcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEE
Q 005254 479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-----RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l 551 (706)
...............+.+ ++++++.|+.+ ..+.+||..+.+-... +......-..+.+ +++++
T Consensus 103 ------~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 172 (308)
T 1zgk_A 103 ------SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLY 172 (308)
T ss_dssp ------EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEE
T ss_pred ------eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEE
Confidence 011001111111122222 67777777644 3588899877643322 1111111222222 56777
Q ss_pred EEecCC-----CcEEEEEcCCCceEEE--EeecccCEEEEEEEeCCCEEEEEeCC-----CCEEEEECCCCeEEEE--ec
Q 005254 552 ITASGD-----KTIKIWSISDGSCLKT--FEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIAT--YD 617 (706)
Q Consensus 552 ~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~ 617 (706)
+.|+.+ ..+.+||+.+.+-... +.........+ .-+++.++.|+.+ ..+.+||+.+.+-... +.
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 250 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC--VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK 250 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEE--EECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC
Confidence 777654 4588999876643221 11111111222 2367777777765 4689999988764322 21
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEECCch
Q 005254 618 KHEDKIWALAVGKKTEMFATGGSD-----ALVNLWHDSTA 652 (706)
Q Consensus 618 ~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~ 652 (706)
........+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 251 ~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 251 HRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 11112222222 67777777754 34677777543
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.48 E-value=0.01 Score=55.10 Aligned_cols=222 Identities=9% Similarity=0.102 Sum_probs=109.3
Q ss_pred EEEeeCCCcEEEEeCCCceEEEE-EeCCCcCeEEEEEecCCCeEEEEecC-------C----CeEEEEEecCCCCCCCcc
Q 005254 414 IVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQNFLVSGSS-------D----HTIKVWSFDGLSDDAEQP 481 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~-------d----~~i~i~~~~~~~~~~~~~ 481 (706)
++.|+ ..+..||..+++-... +..........+...++. +++.|+. . ..+..||.....-
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W----- 79 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW----- 79 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTEE-----
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCE-EEEEcCcccCCCCCccccccceEEecCCCCeE-----
Confidence 55555 5788999998875432 111222333333344545 6666663 1 1256666654310
Q ss_pred cccceeEEEeecCcceEEEEEcCCCCEEEEeeCC--------CcEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEE
Q 005254 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD--------RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l 551 (706)
............. +++. -++++++.|+.+ ..+.+||..+.+-... +......-..+. .+++.+
T Consensus 80 ---~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iy 152 (315)
T 4asc_A 80 ---LGMPPLPSPRCLF-GLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVY 152 (315)
T ss_dssp ---EECCCBSSCEESC-EEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEE
T ss_pred ---EECCCCCcchhce-eEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEE
Confidence 0000000000011 1222 266777777742 3588999887643221 111111112222 356777
Q ss_pred EEecC-C-----CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC-----CEEEEECCCCeEEEEec--c
Q 005254 552 ITASG-D-----KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGECIATYD--K 618 (706)
Q Consensus 552 ~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~--~ 618 (706)
+.|+. + ..+.+||..+.+-...-..........+...+++.++.|+.++ .+.+||+.+.+-...-. .
T Consensus 153 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 232 (315)
T 4asc_A 153 VIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ 232 (315)
T ss_dssp EECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS
T ss_pred EEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC
Confidence 77775 2 3589999877643221111111111122233677778887654 48899998875433221 1
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCC--------------cEEEEECCch
Q 005254 619 HEDKIWALAVGKKTEMFATGGSDA--------------LVNLWHDSTA 652 (706)
Q Consensus 619 ~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~vw~~~~~ 652 (706)
.......+.+ ++++++.|+.++ .+.+||+.+.
T Consensus 233 ~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 233 ERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp CCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred cccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 1112222333 667777777642 3667777654
No 320
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.39 E-value=0.018 Score=53.80 Aligned_cols=143 Identities=11% Similarity=0.061 Sum_probs=98.3
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeec----CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc-------
Q 005254 501 AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH----KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS------- 569 (706)
Q Consensus 501 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------- 569 (706)
..+.+|..++++- ++.||.-++......+.+... -..|..+..+|+|.+||..+.. .|.|-.+..+.
T Consensus 27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHH
T ss_pred EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccc
Confidence 4455666666554 578888888755444454433 2367889999999999998654 69998887331
Q ss_pred -----eEEEEee------cccCEEEEEEEeC---CCEEEEEeCCCCEEEEECCCC--eEEEEec---------cCCCcEE
Q 005254 570 -----CLKTFEG------HTSSVLRASFLTR---GAQIVSCGADGLVKLWTVRTG--ECIATYD---------KHEDKIW 624 (706)
Q Consensus 570 -----~~~~~~~------~~~~i~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~--~~~~~~~---------~~~~~v~ 624 (706)
..+.+.- ...+|..+.|+|- +..|++-..|+.|++||+... ++. .++ .+...|.
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence 1123322 2467999999984 568999999999999999852 222 222 2336789
Q ss_pred EEEEcCCCCEEEEEe--CCCcEEE
Q 005254 625 ALAVGKKTEMFATGG--SDALVNL 646 (706)
Q Consensus 625 ~~~~s~~~~~l~~~~--~dg~i~v 646 (706)
+++|++++-.|...+ .+|.|+-
T Consensus 184 S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 184 DLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEECTTSSCEEEEECTTSCEEEE
T ss_pred EEEEcCCCcEEEEEecCCCCCEEE
Confidence 999999887666644 7787753
No 321
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.39 E-value=0.01 Score=64.41 Aligned_cols=200 Identities=13% Similarity=0.213 Sum_probs=129.1
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC-CeEEEEeecc-
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST-LKCLRSWKGH- 101 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~- 101 (706)
+..++|..+.||.-.+..+.|+|+.+.+.+....- ..+|.--.|-.+. .|+..+ +..|.-|++.. ..++..|.-|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 57789999999999988999999998877665553 3466666776554 344443 34799999964 3455555544
Q ss_pred ---CCCeEEEEECCCCCEEEEec-------CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEE-Eec---C
Q 005254 102 ---DGPAIGMACHPSGGLLATAG-------ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS-GSD---D 167 (706)
Q Consensus 102 ---~~~v~~~~~s~~~~~l~~~~-------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~---d 167 (706)
...|..-..+++.+|++..| ..|.+.+|+++.+. .+.+.||.+....+....+.....+++ +.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 46788888999999988754 35789999987654 334555655544444322111111222 211 2
Q ss_pred CeEEEEECCCC---ee------EEEe-e--cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 168 ATVRVWDLLAK---KC------VATL-D--KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 168 g~i~vwd~~~~---~~------~~~~-~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
+.+.|-++... .. +..+ + ....-..+|..++.-..++..+.-|.+.++|+.++.++..-.
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 67888877432 11 0011 1 112334567778777788888999999999999887765543
No 322
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.32 E-value=0.1 Score=48.43 Aligned_cols=170 Identities=5% Similarity=0.037 Sum_probs=97.7
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeEEE----eecCcceEEEEEcC--CCC-EEEEe-eC--CCcEEEEeCCCc-c---
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVV----AAHGKDINSLAVAP--NDS-LVCTG-SQ--DRTACVWRLPDL-V--- 527 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~s~--~~~-~l~~~-~~--dg~i~i~d~~~~-~--- 527 (706)
.+|.|.++|........ ...... .........+.+.+ ++. +|+++ .. +.+|.+|++... .
T Consensus 81 ~~G~I~~~d~~~~~~~~------~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~ 154 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV------SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLL 154 (355)
T ss_dssp -CCEEEEEETTSSSCCE------EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEE
T ss_pred CCCeEEEEecCCCCCce------EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEE
Confidence 68889999986432111 011111 11223556666655 443 34443 22 456778776543 2
Q ss_pred EEEEEee-cCCcEEEEEEccCCCEEEEecC-----------------CCcEEEEEcCCCceEEEEeecccCEEEEEEEeC
Q 005254 528 SVVTFRG-HKRGIWSVEFSPVDQVVITASG-----------------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 589 (706)
Q Consensus 528 ~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 589 (706)
.+..+.+ .-.....+.+.++|.+.++... .|.|.-+|. ++.. .+...-...+.++|+||
T Consensus 155 ~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~~~l~~pNGia~spD 231 (355)
T 3sre_A 155 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVAEGFDFANGINISPD 231 (355)
T ss_dssp EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-EEEEEESSEEEEEECTT
T ss_pred EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-EeecCCcccCcceECCC
Confidence 2223332 2245789999999998877541 244554544 4332 33333456789999999
Q ss_pred CCEEEEEe-CCCCEEEEECCC-CeE--EEEeccCCCcEEEEEEcC-CCCEEEEEeCC
Q 005254 590 GAQIVSCG-ADGLVKLWTVRT-GEC--IATYDKHEDKIWALAVGK-KTEMFATGGSD 641 (706)
Q Consensus 590 ~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 641 (706)
+++|..+. ..+.|..|++.. ++. ...+ ...+..-.+++.+ +|++.+++..+
T Consensus 232 g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 232 GKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred CCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 99887665 467899999863 432 2233 2245567788888 58877766533
No 323
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.28 E-value=0.03 Score=52.01 Aligned_cols=146 Identities=10% Similarity=0.109 Sum_probs=74.2
Q ss_pred CCCEEEEeeCC-------CcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC------CCcEEEEEcCCCceE
Q 005254 505 NDSLVCTGSQD-------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG------DKTIKIWSISDGSCL 571 (706)
Q Consensus 505 ~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~ 571 (706)
++++++.|+.+ ..+.+||..+.+-...-..........+...++++++.|+. -..+.+||+.+.+-.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 67777777754 24788888776433221111110101111245777777764 235899998876433
Q ss_pred EEEeecccCEEEEEEEeCCCEEEEEeCCC-----CEEEEECCCCeEEE--EeccCCCcEEEEEEcCCCCEEEEEeCC---
Q 005254 572 KTFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGECIA--TYDKHEDKIWALAVGKKTEMFATGGSD--- 641 (706)
Q Consensus 572 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d--- 641 (706)
..-..........+..-+++.++.|+.++ .+.+||+.+.+-.. .+.........+. .++++++.||.+
T Consensus 189 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~ 266 (318)
T 2woz_A 189 DLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQ 266 (318)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC
T ss_pred ECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccC
Confidence 22111111111112223667777776543 47789988765332 2221111222222 266777777654
Q ss_pred -----------CcEEEEECCch
Q 005254 642 -----------ALVNLWHDSTA 652 (706)
Q Consensus 642 -----------g~i~vw~~~~~ 652 (706)
..+.+||+.+.
T Consensus 267 ~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 267 LESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp ----CCBCCBCCCEEEEETTTT
T ss_pred CCCceeccceeeeEEEEeCCCC
Confidence 34667776553
No 324
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.20 E-value=0.19 Score=48.84 Aligned_cols=265 Identities=12% Similarity=0.061 Sum_probs=145.4
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeC------------------------------CcceEEEeeeeeecCCCEEEEEe
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAG------------------------------HSEIVLCLDTCALSSGKILIVTG 417 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~------------------------------~~~~i~~~~~~~~~~~~~~l~~~ 417 (706)
.+.+++..|+++++-+.+++.+..+.- |...+..-+ -..+++++++-.
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~td--g~yDGrylfiNd 149 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTD--GKYDGKYLFIND 149 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEET--TEEEEEEEEEEE
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccC--CeeeeEEEEEec
Confidence 366778889999999999888776541 111122111 224566656655
Q ss_pred eCCCcEEEEeCCCceEEEEEe-CCCcCeEEEEEe--cCCCeEEEEecCCCeEEEEEecCCCCCC-CcccccceeEEEeec
Q 005254 418 SKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFS--KKLQNFLVSGSSDHTIKVWSFDGLSDDA-EQPMNLKAKAVVAAH 493 (706)
Q Consensus 418 ~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~~~~~d~~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~ 493 (706)
-.+.+|...++...++-+.+. .....+..+++. |+.. +++.++... +-+= +.+.... ..+.+..........
T Consensus 150 kan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~-yv~~~~e~~-~P~p--ndg~~~~~~~~~~y~~f~~iD~~ 225 (638)
T 3sbq_A 150 KANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTK-YVFANAEFI-IPHP--NDGKVFDLQDENSYTMYNAIDAE 225 (638)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCC-EEEEEECSC-EESS--CSSSCCCTTSTTEEEEEEEEETT
T ss_pred CCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCcc-EEEecceee-ccCC--CCCcccccCChhhceEEEEEcCC
Confidence 567788888888877666544 345678888886 4544 666665421 1100 0000000 000000000001111
Q ss_pred ----------CcceEEEEEcCCCCEEEEeeCCC---------------cEEEEe-------------------------C
Q 005254 494 ----------GKDINSLAVAPNDSLVCTGSQDR---------------TACVWR-------------------------L 523 (706)
Q Consensus 494 ----------~~~i~~~~~s~~~~~l~~~~~dg---------------~i~i~d-------------------------~ 523 (706)
..........++|++.++.+.+. .+.+++ .
T Consensus 226 tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~ 305 (638)
T 3sbq_A 226 TMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG 305 (638)
T ss_dssp TCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred ccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence 12233445566777777766541 133443 3
Q ss_pred CC----ccEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcCCC------ce-------EEEEeecccCEEEEE
Q 005254 524 PD----LVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDG------SC-------LKTFEGHTSSVLRAS 585 (706)
Q Consensus 524 ~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~------~~-------~~~~~~~~~~i~~~~ 585 (706)
+. +..+..+-.-......+.++|||++++.++ .+.++.++|+... +. ..+.+ -.-.....+
T Consensus 306 ~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~ 384 (638)
T 3sbq_A 306 RKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTT 384 (638)
T ss_dssp SCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEE
T ss_pred ccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEE
Confidence 32 111111112223445688999999987765 4788999998742 11 22222 234567899
Q ss_pred EEeCCCEEEEEeCCCCEEEEECCCC----------eEEEEeccCCCcEEEEE-----EcCCCCEEEEEe
Q 005254 586 FLTRGAQIVSCGADGLVKLWTVRTG----------ECIATYDKHEDKIWALA-----VGKKTEMFATGG 639 (706)
Q Consensus 586 ~s~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~-----~s~~~~~l~~~~ 639 (706)
|.++|.-..+.--|..|.-|++... ..+..+.-|-.+-.-.+ -.+||++|++..
T Consensus 385 Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 385 FDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp ECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred ECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 9999955556668999999999753 46666665544322111 145666666543
No 325
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.16 E-value=0.16 Score=47.61 Aligned_cols=231 Identities=13% Similarity=0.130 Sum_probs=121.7
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce-EEEEEe---CCCcCeEEEEEecC---CCeEEEEecC---C----
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-CVGVGT---GHMGAVGAVAFSKK---LQNFLVSGSS---D---- 463 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~~l~~~~~---d---- 463 (706)
....++ +.+++. ++++..+|.|++++. +++ .+..+. ........++++|+ +..+.++-.. +
T Consensus 30 ~P~~ia--~~pdG~--l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 30 VPWSIA--PLGGGR--YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CEEEEE--EEETTE--EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCeEEE--EcCCCe--EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 345565 777765 444456699999974 444 222211 22356889999997 4434444332 3
Q ss_pred CeEEEEEecCCCCCCCccccccee-EEEe-ecCcceEEEEEcCCCCEEEEeeCC-------------CcEEEEeCCCc--
Q 005254 464 HTIKVWSFDGLSDDAEQPMNLKAK-AVVA-AHGKDINSLAVAPNDSLVCTGSQD-------------RTACVWRLPDL-- 526 (706)
Q Consensus 464 ~~i~i~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~~s~~~~~l~~~~~d-------------g~i~i~d~~~~-- 526 (706)
..|..|+......... ..+.. .... ........++|.|||.+.++.+.. |.|.-++....
T Consensus 105 ~~v~r~~~~~~~~~~~---~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p 181 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLK---EVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP 181 (354)
T ss_dssp EEEEEEEECSSSCCEE---EEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred eEEEEEEECCCCcCcC---ccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence 5677777654311110 00011 1111 111234679999999877764321 44555554321
Q ss_pred ------cEEEEEeecCCcEEEEEEcc-CCCEEEEecCCC---cEEEEEcCCCc------------------eEEEEeecc
Q 005254 527 ------VSVVTFRGHKRGIWSVEFSP-VDQVVITASGDK---TIKIWSISDGS------------------CLKTFEGHT 578 (706)
Q Consensus 527 ------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg---~i~iwd~~~~~------------------~~~~~~~~~ 578 (706)
.......++. ....++|+| ++.++++-...+ .|.+.. .+. ++..+....
T Consensus 182 ~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 258 (354)
T 3a9g_A 182 ADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSET 258 (354)
T ss_dssp TTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence 0111112333 345799999 566555432221 133322 111 222331122
Q ss_pred cCEEEEEEE-------eCCCEEEEEeCCCCEEEEECCCC-eEE--EEe-ccCCCcEEEEEEcCCCCEEEEEe
Q 005254 579 SSVLRASFL-------TRGAQIVSCGADGLVKLWTVRTG-ECI--ATY-DKHEDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 579 ~~i~~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~-~~~~~~v~~~~~s~~~~~l~~~~ 639 (706)
.....++|. .+|.++++....+.|...++... +.. ..+ ......+..+++.|||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 356778883 56766666666678888888753 332 222 22345789999999998766654
No 326
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.15 E-value=0.17 Score=47.55 Aligned_cols=232 Identities=13% Similarity=0.067 Sum_probs=117.7
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceee--Eeee---CCcceEEEeeeeeecC---CCEEEEEeeCC-----C
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--YVLA---GHSEIVLCLDTCALSS---GKILIVTGSKD-----N 421 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~--~~~~---~~~~~i~~~~~~~~~~---~~~~l~~~~~d-----g 421 (706)
....+++.+ ++. +.++...+.|.+++ .+... ..+. ........++ +.|+ ++.+.++-... +
T Consensus 32 ~P~~ia~~p-dG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia--~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 32 VPWALAFLP-DGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLA--LHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CEEEEEECT-TSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEE--ECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CceEEEEcC-CCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEE--ECCCCCCCCEEEEEEecCCCCCcc
Confidence 456788877 445 45556669999998 33321 1111 1234556666 7776 55644444432 5
Q ss_pred cEEEEeCCCce-----EE-EEEe---CCCcCeEEEEEecCCCeEEEEecC-------------CCeEEEEEecCCCCCCC
Q 005254 422 SVRLWDSESRC-----CV-GVGT---GHMGAVGAVAFSKKLQNFLVSGSS-------------DHTIKVWSFDGLSDDAE 479 (706)
Q Consensus 422 ~i~i~d~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~i~~~~~~~~~~~ 479 (706)
.|..++...+. .+ ..+. ........++|.|+|. +.++.+. .|.|.-++.+.. ....
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~-~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGE-PAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSS-BCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCC-CCCC
Confidence 77788776431 11 1132 1122346899999986 4444332 144544444321 0000
Q ss_pred cccc----cceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcE------EEEeCCCcc------------------EEE
Q 005254 480 QPMN----LKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTA------CVWRLPDLV------------------SVV 530 (706)
Q Consensus 480 ~~~~----~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i------~i~d~~~~~------------------~~~ 530 (706)
.+.. ........++ .....++|+| ++.++++-...+.+ .+.-+..+. +..
T Consensus 184 npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 0000 0011112222 3357789999 66655553332221 122222221 222
Q ss_pred EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce------EEEEeecccCEEEEEEEeCCCEEEEEe
Q 005254 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC------LKTFEGHTSSVLRASFLTRGAQIVSCG 597 (706)
Q Consensus 531 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~ 597 (706)
.+. +......++| .+|..+++....+.|...+++.... ...+......+..+++.|||.++++..
T Consensus 263 ~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred ecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 221 2234567787 4677766666677788777754321 122222335788899999987666654
No 327
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.15 E-value=0.16 Score=47.17 Aligned_cols=188 Identities=14% Similarity=0.152 Sum_probs=111.7
Q ss_pred ceEEcCCCCEEEEe-------------eCCeEEEEEccC--CeEE-EeecC-----CCccEEEEEEcc--CCC-EEEEEe
Q 005254 24 PLVVSSDGSFIACA-------------CGESINIVDLSN--ASIK-STIEG-----GSDTITALALSP--DDK-LLFSSG 79 (706)
Q Consensus 24 ~~~~s~dg~~l~~~-------------~~~~i~i~d~~~--~~~~-~~l~~-----~~~~i~~l~~s~--~~~-~l~s~~ 79 (706)
.+++.|+|..++++ ..+.|.++|+++ ++.. ..+.+ .......+.+.+ ++. +|.++.
T Consensus 54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvn 133 (355)
T 3sre_A 54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN 133 (355)
T ss_dssp EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEE
Confidence 78899988665554 345899999873 3321 22333 223567777766 454 455552
Q ss_pred c---cCeEEEEECCCC----eEEEEeecc-CCCeEEEEECCCCCEEEEecC-----------------CCcEEEEECCCC
Q 005254 80 H---SREIRVWDLSTL----KCLRSWKGH-DGPAIGMACHPSGGLLATAGA-----------------DRKVLVWDVDGG 134 (706)
Q Consensus 80 ~---d~~i~iwd~~~~----~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~-----------------d~~i~vw~~~~~ 134 (706)
. +..|.+|++... ..+..+.+. -...+.+++.++|.+.++... .|.|..++. +
T Consensus 134 h~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~ 211 (355)
T 3sre_A 134 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N 211 (355)
T ss_dssp CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--T
T ss_pred CCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--C
Confidence 2 467888877543 233344432 246789999999987777531 234544444 3
Q ss_pred eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC-Cee--EEEeecccceEEEEEEec-CCCEEEEEeCC-
Q 005254 135 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-KKC--VATLDKHFSRVTSMAITS-DGSTLISAGRD- 209 (706)
Q Consensus 135 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d- 209 (706)
+. ..+...-...+.++|+||++. ++++-+..+.|..|++.. ++. .+.+ ...+....+++.+ +|++.+++..+
T Consensus 212 ~~-~~~~~~l~~pNGia~spDg~~-lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g 288 (355)
T 3sre_A 212 DV-RVVAEGFDFANGINISPDGKY-VYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNG 288 (355)
T ss_dssp CC-EEEEEEESSEEEEEECTTSSE-EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCH
T ss_pred eE-EEeecCCcccCcceECCCCCE-EEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCc
Confidence 32 222223455789999999876 344445678899999863 332 1233 2245678888988 58866656533
Q ss_pred CEEEEEe
Q 005254 210 KVVNLWD 216 (706)
Q Consensus 210 g~i~~w~ 216 (706)
+.|..|+
T Consensus 289 ~~v~~~~ 295 (355)
T 3sre_A 289 MRIFFYD 295 (355)
T ss_dssp HHHHSCC
T ss_pred eEEEEEC
Confidence 3444443
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.14 E-value=0.027 Score=52.28 Aligned_cols=188 Identities=9% Similarity=0.041 Sum_probs=95.8
Q ss_pred eEEcCCCCEEEEeeC-----C-------eEEEEEccCCeEEE--eecCCCccEEEEEEccCCCEEEEEecc--------C
Q 005254 25 LVVSSDGSFIACACG-----E-------SINIVDLSNASIKS--TIEGGSDTITALALSPDDKLLFSSGHS--------R 82 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~-----~-------~i~i~d~~~~~~~~--~l~~~~~~i~~l~~s~~~~~l~s~~~d--------~ 82 (706)
-+...+++++++|+. . .+.+||+.+++-.. .+......-.++.+ ++++++.|+.+ .
T Consensus 40 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 40 SLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp EEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCC
T ss_pred EEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccc
Confidence 344467788877772 1 28889998876432 11111111122222 56666666632 4
Q ss_pred eEEEEECCCCeEE--EEeeccCCCeEEEEECCCCCEEEEecC------CCcEEEEECCCCeEEEEe--eCCCCcEEEEEE
Q 005254 83 EIRVWDLSTLKCL--RSWKGHDGPAIGMACHPSGGLLATAGA------DRKVLVWDVDGGFCTHYF--KGHKGVVSSILF 152 (706)
Q Consensus 83 ~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~ 152 (706)
.+.+||..+.+-. ..+......-.++. .+++.++.|+. -..+.+||+.+.+-...- ......-.++.+
T Consensus 118 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 195 (315)
T 4asc_A 118 SVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH 195 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred eEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE
Confidence 5899999876522 22221112222222 35667777765 246899999887543321 111111122222
Q ss_pred cCCCCceEEEEEecCC-----eEEEEECCCCeeEEEe--ecccceEEEEEEecCCCEEEEEeCCC--------------E
Q 005254 153 HPDTDKSLLFSGSDDA-----TVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTLISAGRDK--------------V 211 (706)
Q Consensus 153 ~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~ 211 (706)
+ + .+++.|+.++ .+.+||+.+.+-...- ....... +++ .-+++.++.|+.++ .
T Consensus 196 --~-~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~ 269 (315)
T 4asc_A 196 --D-G-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL-SLV-SLVGTLYAIGGFATLETESGELVPTELND 269 (315)
T ss_dssp --T-T-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred --C-C-EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce-eEE-EECCEEEEECCccccCcCCccccccccCc
Confidence 2 3 3455565443 5888998876543321 1111111 222 22666777776532 3
Q ss_pred EEEEeCCCCcc
Q 005254 212 VNLWDLRDYSC 222 (706)
Q Consensus 212 i~~w~~~~~~~ 222 (706)
+.+||+.+.+-
T Consensus 270 v~~yd~~~~~W 280 (315)
T 4asc_A 270 IWRYNEEEKKW 280 (315)
T ss_dssp EEEEETTTTEE
T ss_pred EEEecCCCChh
Confidence 66777776543
No 329
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.13 E-value=0.18 Score=47.38 Aligned_cols=136 Identities=13% Similarity=0.167 Sum_probs=77.3
Q ss_pred eccceEEcCCCC-EEEEeeCCeEEEEEccCCeEEEe---e----cCCCccEEEEEEccC---CCEEEEEe-c-------c
Q 005254 21 GGGPLVVSSDGS-FIACACGESINIVDLSNASIKST---I----EGGSDTITALALSPD---DKLLFSSG-H-------S 81 (706)
Q Consensus 21 ~~~~~~~s~dg~-~l~~~~~~~i~i~d~~~~~~~~~---l----~~~~~~i~~l~~s~~---~~~l~s~~-~-------d 81 (706)
....|+|.|||+ ++++-..+.|++++. .++.... + .........|+++|+ +.+|..+. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 344799999999 777666679999985 3433211 1 122346789999996 45554442 2 2
Q ss_pred CeEEEEECCCC-----eE--E-EEeec---cCCCeEEEEECCCCCEEEEecC-------------CCcEEEEECCCCe--
Q 005254 82 REIRVWDLSTL-----KC--L-RSWKG---HDGPAIGMACHPSGGLLATAGA-------------DRKVLVWDVDGGF-- 135 (706)
Q Consensus 82 ~~i~iwd~~~~-----~~--~-~~~~~---~~~~v~~~~~s~~~~~l~~~~~-------------d~~i~vw~~~~~~-- 135 (706)
..|..|++... .. + ..+.. ....-..|+|.|||.+.++.+. .+.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35777776533 11 1 11111 1122357999999976665433 2457777765320
Q ss_pred ----------EEEEe-eCCCCcEEEEEEcCCCCc
Q 005254 136 ----------CTHYF-KGHKGVVSSILFHPDTDK 158 (706)
Q Consensus 136 ----------~~~~~-~~~~~~v~~~~~~~~~~~ 158 (706)
....+ .++ .....++|.|+...
T Consensus 178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~ 210 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNA 210 (353)
T ss_dssp TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTE
T ss_pred CCCCcCCCCCCccEEEEcC-cCccceEEECCCCC
Confidence 11111 223 34688999994344
No 330
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.13 E-value=0.026 Score=47.32 Aligned_cols=142 Identities=15% Similarity=0.067 Sum_probs=83.7
Q ss_pred ccEEEEEEccCCCEEEEEeccCeEEEEECCCCeE------EEEee--ccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKC------LRSWK--GHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 61 ~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
..++.++|+|+|.+.++ .+|.+.-.+..+... -..+- +-. ...++.|.|+|.+.++ .||.|.-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 47789999999987666 677776666544211 11111 111 1478999999988887 56988877763
Q ss_pred CCeE-------EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe------eEEEe-ecccceEEEEEEec
Q 005254 133 GGFC-------THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK------CVATL-DKHFSRVTSMAITS 198 (706)
Q Consensus 133 ~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~-~~~~~~v~~~~~~~ 198 (706)
+... ...-..-=..+..|.|.|+|. |.+.. |+.++-+...++. ....+ +..-.....+.|.+
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~---Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGY---LYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSC---EEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCce---EEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 3110 011111225689999999987 56666 8876544333221 11111 12333455577899
Q ss_pred CCCEEEEEeCCCEEE
Q 005254 199 DGSTLISAGRDKVVN 213 (706)
Q Consensus 199 ~~~~l~~~~~dg~i~ 213 (706)
++.+.++. +|.+.
T Consensus 192 ~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 192 VGTLFGVQ--GGKFY 204 (236)
T ss_dssp TSCEEEEE--TTEEE
T ss_pred CCcEEEEe--CCeEE
Confidence 88765555 77443
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.12 E-value=0.0055 Score=51.26 Aligned_cols=141 Identities=14% Similarity=0.067 Sum_probs=81.8
Q ss_pred eccceEEcCCCCEEEEeeCCeEEEEEccCCeEE------Eee-cCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe
Q 005254 21 GGGPLVVSSDGSFIACACGESINIVDLSNASIK------STI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK 93 (706)
Q Consensus 21 ~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~------~~l-~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~ 93 (706)
.-..++|+|||.+.++ ..+.++-.+..++... ..+ .+.-..-.++.|.|+|.+.++ .||.|.-++-.+..
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD 118 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence 3347999999998888 7778887776553221 111 111112478999999998888 56999888764321
Q ss_pred EEE------Ee-eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe------EEEEee-CCCCcEEEEEEcCCCCce
Q 005254 94 CLR------SW-KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF------CTHYFK-GHKGVVSSILFHPDTDKS 159 (706)
Q Consensus 94 ~~~------~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~------~~~~~~-~~~~~v~~~~~~~~~~~~ 159 (706)
.-. .+ .+-=..+..|.|.|+|.+-++. |+.+.-+...++. ....+. ..-.....+.|.+++.
T Consensus 119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~-- 194 (236)
T 1tl2_A 119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-- 194 (236)
T ss_dssp TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC--
T ss_pred CCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc--
Confidence 110 11 1011467899999999887776 6765433332111 011111 2333445566888765
Q ss_pred EEEEEecCCeE
Q 005254 160 LLFSGSDDATV 170 (706)
Q Consensus 160 ~l~~~~~dg~i 170 (706)
|.... +|.+
T Consensus 195 -l~~v~-~g~~ 203 (236)
T 1tl2_A 195 -LFGVQ-GGKF 203 (236)
T ss_dssp -EEEEE-TTEE
T ss_pred -EEEEe-CCeE
Confidence 44444 6643
No 332
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.01 Score=54.59 Aligned_cols=229 Identities=10% Similarity=0.044 Sum_probs=120.7
Q ss_pred EEEEeeCCCcEEEEeCCCceEEEEEeCC-CcCeEEEEE--ecCCCeEEEEe-cCCCeEEEEEecCCCCCCCcccccceeE
Q 005254 413 LIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAF--SKKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKA 488 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 488 (706)
+++.++.||.|.-+|..+|+.+..+... ..++....- .+.+...++.. ..||.+..++...+. ...
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~----------~~~ 81 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL----------QKL 81 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE----------EEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc----------EEe
Confidence 3889999999999999999999887654 122221110 01122234443 578999888875441 111
Q ss_pred EEee----cCcceEE---EEE-----cCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCC-c------EEEEEEc----
Q 005254 489 VVAA----HGKDINS---LAV-----APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR-G------IWSVEFS---- 545 (706)
Q Consensus 489 ~~~~----~~~~i~~---~~~-----s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~------v~~~~~s---- 545 (706)
.... ...++.. ..+ +..+..+++|+.+|.+...|+.+|+.+..+..... . ..|....
T Consensus 82 ~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~ 161 (339)
T 2be1_A 82 PLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKL 161 (339)
T ss_dssp EEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----------------
T ss_pred eeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccc
Confidence 1100 0111111 000 01456888999999999999999999998874211 0 0111110
Q ss_pred -cCCCEEEEecCCCcEEEEEcCCCceEEEE-----eecccC--E-EEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE-E
Q 005254 546 -PVDQVVITASGDKTIKIWSISDGSCLKTF-----EGHTSS--V-LRASFLTRGAQIVSCGADGLVKLWTVRTGECIA-T 615 (706)
Q Consensus 546 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~--i-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~ 615 (706)
..+..++.+..+..+.+.+ ++|+ +..+ ...... + ..-..+.|+.+ +.++.||.|.-+|..+|+.+. +
T Consensus 162 d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W~~ 238 (339)
T 2be1_A 162 QECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARWVS 238 (339)
T ss_dssp ---CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEEEC
T ss_pred ccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEEEe
Confidence 1235667666666666666 3443 2111 110000 0 00001124555 446788888888888887765 2
Q ss_pred eccCCCcEE--------------EEEEcC----------CCCEEEEEeCCCcEEEEECCchhHH
Q 005254 616 YDKHEDKIW--------------ALAVGK----------KTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 616 ~~~~~~~v~--------------~~~~s~----------~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
.+ -..++. -+.-.| +++.++..+.+|.+.-+....=...
T Consensus 239 ~~-l~sPv~~~~dv~~~~~~g~~v~~~~P~~~~~~~~~~~~~v~v~~t~~G~~~Als~~~yp~~ 301 (339)
T 2be1_A 239 PT-FPGIIVGLFDVFNDLRTNENILVPHPFNPGDHESISSNKVYLDQTSNLSWFALSSQNFPSL 301 (339)
T ss_dssp CC-CSSCEEEEEEEEEETTTTEEEEEECCCCC--------CCEEEEECTTCCEEEEETTTCHHH
T ss_pred ec-CCCCeEEEEEEEEecCCCCEEEecCCCcccccccccCCeEEEEECCCCcEEEecCCCCcee
Confidence 21 122221 122223 3444444677999999987554433
No 333
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.11 E-value=0.19 Score=47.25 Aligned_cols=239 Identities=11% Similarity=0.106 Sum_probs=123.7
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE---E----eCCCcCeEEEEEecC---CCeEEEEecC------
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV---G----TGHMGAVGAVAFSKK---LQNFLVSGSS------ 462 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~~l~~~~~------ 462 (706)
...++ +.++++.++ ++...|.|++++.. +..... + .........++++|+ +..+.++-..
T Consensus 20 P~~i~--~~pdG~~l~-V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 20 PWALA--FLPDNHGML-ITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp EEEEE--ECSTTCCEE-EEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred cEEEE--EcCCCCEEE-EEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 34555 788887424 44557899999854 322111 1 112345688999995 3434444332
Q ss_pred -CCeEEEEEecCCCCCCCcccccceeEEEee------cCcceEEEEEcCCCCEEEEeeCC-------------CcEEEEe
Q 005254 463 -DHTIKVWSFDGLSDDAEQPMNLKAKAVVAA------HGKDINSLAVAPNDSLVCTGSQD-------------RTACVWR 522 (706)
Q Consensus 463 -d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~d-------------g~i~i~d 522 (706)
...|..+++........ . ....+.. .......++|.|||.+.++.+.. |.|.-++
T Consensus 96 ~~~~v~r~~~~~~~~~~~---~--~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVT---D--FRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp EEEEEEEEEECTTSSBEE---E--EEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred ceeEEEEEEECCCCCCCC---c--eEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 23566666543211000 0 1111111 11224679999999666654332 4566666
Q ss_pred CCCcc------------EEEEE-eecCCcEEEEEEcc-CCCEEEEecC-CCcEEEEEcCCC-------------------
Q 005254 523 LPDLV------------SVVTF-RGHKRGIWSVEFSP-VDQVVITASG-DKTIKIWSISDG------------------- 568 (706)
Q Consensus 523 ~~~~~------------~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~-dg~i~iwd~~~~------------------- 568 (706)
....- ....+ .++ .....++|+| ++.++++-.. ++.=.|.-+..+
T Consensus 171 ~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 171 DQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp TTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 54210 11111 122 3467899999 5554443211 111122211111
Q ss_pred ------------ceEEEEeecccCEEEEEEEe-------CCCEEEEEeCCCCEEEEECCCCeEEEEe---ccCCCcEEEE
Q 005254 569 ------------SCLKTFEGHTSSVLRASFLT-------RGAQIVSCGADGLVKLWTVRTGECIATY---DKHEDKIWAL 626 (706)
Q Consensus 569 ------------~~~~~~~~~~~~i~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~ 626 (706)
.++..+. +...+..+.|.. +|.++++.-..+.|...++..++.+... ......+..+
T Consensus 250 ~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v 328 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDV 328 (353)
T ss_dssp TTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEE
T ss_pred CcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEE
Confidence 1122222 234567788864 4667776667778888888766544332 2223578999
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEECC
Q 005254 627 AVGKKTEMFATGG-SDALVNLWHDS 650 (706)
Q Consensus 627 ~~s~~~~~l~~~~-~dg~i~vw~~~ 650 (706)
++.|||.+.++.. .+| +||++.
T Consensus 329 ~~~pdG~lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 329 RTGPDGYLYVLTDESSG--ELLKVS 351 (353)
T ss_dssp EECTTSCEEEEECSTTE--EEEEEE
T ss_pred EECCCCcEEEEEeCCCC--EEEEEe
Confidence 9999998666433 344 566654
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.10 E-value=0.018 Score=53.31 Aligned_cols=182 Identities=10% Similarity=0.116 Sum_probs=95.7
Q ss_pred CCCEEEEeeC----------CeEEEEEccCCeEEEe--ecCCCccEEEEEEccCCCEEEEEecc-----CeEEEEECCCC
Q 005254 30 DGSFIACACG----------ESINIVDLSNASIKST--IEGGSDTITALALSPDDKLLFSSGHS-----REIRVWDLSTL 92 (706)
Q Consensus 30 dg~~l~~~~~----------~~i~i~d~~~~~~~~~--l~~~~~~i~~l~~s~~~~~l~s~~~d-----~~i~iwd~~~~ 92 (706)
+++++++|+. +.+.+||+.+.+-... +......-.++.+ ++++++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 6777777654 2589999988764322 2211222222333 66777776543 46889998876
Q ss_pred eEEE--EeeccCCCeEEEEECCCCCEEEEecCC-----CcEEEEECCCCeEEEE--eeCCCCcEEEEEEcCCCCceEEEE
Q 005254 93 KCLR--SWKGHDGPAIGMACHPSGGLLATAGAD-----RKVLVWDVDGGFCTHY--FKGHKGVVSSILFHPDTDKSLLFS 163 (706)
Q Consensus 93 ~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~ 163 (706)
+-.. .+......-.++.+ +++.++.|+.+ ..+.+||+.+.+-... +.........+.+ + + .+++.
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~-~-~iyv~ 221 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--H-N-CIYAA 221 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T-T-EEEEE
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--C-C-EEEEE
Confidence 5322 22222222223333 56777777643 4689999987754322 1111111222222 2 2 34566
Q ss_pred EecC-----CeEEEEECCCCeeEEE--eecccceEEEEEEecCCCEEEEEeCC-----CEEEEEeCCCCc
Q 005254 164 GSDD-----ATVRVWDLLAKKCVAT--LDKHFSRVTSMAITSDGSTLISAGRD-----KVVNLWDLRDYS 221 (706)
Q Consensus 164 ~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~~~~ 221 (706)
|+.+ ..+.+||+.+.+-... +....... +++. -+++.++.|+.+ ..+.+||+.+.+
T Consensus 222 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 222 GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eCCCCCCccceEEEEeCCCCcEEECCCCCCCccce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 6553 5689999887654322 11111111 2222 256677777643 467788877654
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.08 E-value=0.047 Score=50.71 Aligned_cols=220 Identities=10% Similarity=0.053 Sum_probs=103.0
Q ss_pred cEEEEeCCCceeeEe-eeCCc-ceEEEeeeeeecCCCEEEEEeeC----CC-------cEEEEeCCCceEEEEEeCCCcC
Q 005254 377 QVQVYDLSSMSCSYV-LAGHS-EIVLCLDTCALSSGKILIVTGSK----DN-------SVRLWDSESRCCVGVGTGHMGA 443 (706)
Q Consensus 377 ~i~~~d~~~~~~~~~-~~~~~-~~i~~~~~~~~~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~~~~~~~~ 443 (706)
.+..||..+.+-... +.... ..-.++ ...++.. ++.|+. ++ .+..||..+.+...........
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~---~~~~~~l-yv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSI---VTQQNQV-YVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEE---ECSSSCE-EEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceecccCCccCCccceEE---EEECCEE-EEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 478889887765431 11111 111111 2334444 666662 12 1778888877654432111111
Q ss_pred -eEEEEEecCCCeEEEEecCC-------CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-
Q 005254 444 -VGAVAFSKKLQNFLVSGSSD-------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ- 514 (706)
Q Consensus 444 -v~~~~~~~~~~~~l~~~~~d-------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~- 514 (706)
-.+++.. ++. +++.|+.+ ..+.+||..... +............ .+++. .++++++.|+.
T Consensus 101 ~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~--------W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~ 168 (318)
T 2woz_A 101 CLFGLGEV-DDK-IYVVAGKDLQTEASLDSVLCYDPVAAK--------WSEVKNLPIKVYG-HNVIS-HNGMIYCLGGKT 168 (318)
T ss_dssp CSCEEEEE-TTE-EEEEEEEBTTTCCEEEEEEEEETTTTE--------EEEECCCSSCEES-CEEEE-ETTEEEEECCEE
T ss_pred cccceEEE-CCE-EEEEcCccCCCCcccceEEEEeCCCCC--------EeECCCCCCcccc-cEEEE-ECCEEEEEcCCC
Confidence 1122222 334 66666653 346667765431 0000000000001 11222 46777777764
Q ss_pred -----CCcEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecCC-----CcEEEEEcCCCceEEEEeecccCEE
Q 005254 515 -----DRTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSCLKTFEGHTSSVL 582 (706)
Q Consensus 515 -----dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~ 582 (706)
-..+.+||+.+.+-... +.........+.+ +++.++.|+.+ ..+.+||+.+.+-...-........
T Consensus 169 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 246 (318)
T 2woz_A 169 DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS 246 (318)
T ss_dssp SSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS
T ss_pred CCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc
Confidence 23589999887643322 1111111122222 56777777653 3477899876643221111111111
Q ss_pred EEEEEeCCCEEEEEeCC--------------CCEEEEECCCCeEEE
Q 005254 583 RASFLTRGAQIVSCGAD--------------GLVKLWTVRTGECIA 614 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~ 614 (706)
..+...+++.++.|+.+ ..+.+||+.+.+-..
T Consensus 247 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 247 ISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp CEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred eEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 12223466777777654 357888988776443
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.04 E-value=0.074 Score=58.09 Aligned_cols=300 Identities=13% Similarity=0.127 Sum_probs=171.0
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCe
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 455 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 455 (706)
.++.+.|+.++...... ++.+=....+|..+. ++.-. ..++.++|+++...+....-. .+|.--.|-....
T Consensus 48 ~~vvIidl~~~~~~~rr-----pi~AdsAIMnP~~~i-iALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~- 118 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRR-----PISADSAIMNPASKV-IALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT- 118 (1630)
T ss_pred ceEEEEECCCCCCcccc-----cccchhhccCCCcce-EEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCe-
Confidence 37888898876544221 111111114555554 44443 778999999988877765543 3555556655433
Q ss_pred EEEEecCCCeEEEEEecCCCCCCCcccccc-eeEEEeecCcceEEEEEcCCCCEEEEee-------CCCcEEEEeCCCcc
Q 005254 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLK-AKAVVAAHGKDINSLAVAPNDSLVCTGS-------QDRTACVWRLPDLV 527 (706)
Q Consensus 456 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~dg~i~i~d~~~~~ 527 (706)
|+..+ +..|.-|++.... .|.... ....+ .+..|..-..+++.++++..+ -.|.+.+|..+.+
T Consensus 119 -l~lVT-~~aVyHW~~~~~s----~P~k~fdR~~~L--~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~- 189 (1630)
T 1xi4_A 119 -VALVT-DNAVYHWSMEGES----QPVKMFDRHSSL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK- 189 (1630)
T ss_pred -eEEEc-CCeEEEeccCCCC----ccHHHHhcchhc--ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-
Confidence 33333 4569999996522 111111 11111 146688888899998887544 3477888887543
Q ss_pred EEEEEeecCCcEEEEEEcc--C-CCEEEEecC---CCcEEEEEcCCC---ce------EEEEee---cccCEEEEEEEeC
Q 005254 528 SVVTFRGHKRGIWSVEFSP--V-DQVVITASG---DKTIKIWSISDG---SC------LKTFEG---HTSSVLRASFLTR 589 (706)
Q Consensus 528 ~~~~~~~~~~~v~~~~~s~--~-~~~l~~~~~---dg~i~iwd~~~~---~~------~~~~~~---~~~~i~~~~~s~~ 589 (706)
....+.+|......+.... . ...++.+.. .+.+.|-++... .. +..+.. ...-..++..++.
T Consensus 190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k 269 (1630)
T 1xi4_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK 269 (1630)
T ss_pred cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc
Confidence 3334455544433333221 1 122222211 267888888543 11 111111 1223446777877
Q ss_pred CCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHHHHHH-------
Q 005254 590 GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKE------- 662 (706)
Q Consensus 590 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~------- 662 (706)
-..+...+.-|.|+++|+.||.++..-+-....|...+-.....=++.....|.|.--.++......-.....
T Consensus 270 ~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~yi~~~l~~~~la~ 349 (1630)
T 1xi4_A 270 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLAL 349 (1630)
T ss_pred cCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhhhhHhhccCCHHHHH
Confidence 7788888999999999999999887766656666655554433334445567777776666655444332211
Q ss_pred ---------HHHHHhcchhhhhhhccchhHhhheeeecCC
Q 005254 663 ---------EEAVLRGQELENAVLDADYTKAIQVAFELRR 693 (706)
Q Consensus 663 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (706)
...-+-.+........+++.++.+++.+++.
T Consensus 350 ~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~~aa~sp~ 389 (1630)
T 1xi4_A 350 RMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK 389 (1630)
T ss_pred HHHHhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 0011222346677788888888888887754
No 337
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.92 E-value=0.23 Score=45.16 Aligned_cols=179 Identities=7% Similarity=0.065 Sum_probs=107.8
Q ss_pred eccceEEcCCCCEEEEeeCC---------------eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe----cc
Q 005254 21 GGGPLVVSSDGSFIACACGE---------------SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----HS 81 (706)
Q Consensus 21 ~~~~~~~s~dg~~l~~~~~~---------------~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~----~d 81 (706)
...+--++++|++|++.... .|+..++.+.+....... . +..|++++++|+-.. ..
T Consensus 54 ~~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~-~----~~~~s~~g~~Iy~~~~~~~~~ 128 (302)
T 3s25_A 54 NDTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD-P----CIYASLIGNYIYYLHYDTQTA 128 (302)
T ss_dssp EEEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS-C----EEEEEEETTEEEEEEESSSSC
T ss_pred CCceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC-C----ccEEEEeCCEEEEEeecCCCC
Confidence 33355678999999999642 588888877664333222 1 237888999998775 34
Q ss_pred CeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecC-CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceE
Q 005254 82 REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA-DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL 160 (706)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 160 (706)
..|..-++.. .....+..+.. .+|+++++.|.-.+. ...|.+-+++.+.....+.+ ... ..++|+++.
T Consensus 129 ~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~-- 197 (302)
T 3s25_A 129 TSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTN-- 197 (302)
T ss_dssp EEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTE--
T ss_pred ceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCE--
Confidence 4566666654 33444543432 457888998887664 57888888887764443332 222 346688776
Q ss_pred EEEEecC--CeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC--CCEEEEEeCCCC
Q 005254 161 LFSGSDD--ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR--DKVVNLWDLRDY 220 (706)
Q Consensus 161 l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~w~~~~~ 220 (706)
|+-.... ..|..-++.... ...+.. ..+ ..|+|++..|+-+.. .+.|..-+++..
T Consensus 198 iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 198 VYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 4433322 456666665444 333322 223 337888888876532 356666666543
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.88 E-value=0.022 Score=54.06 Aligned_cols=136 Identities=8% Similarity=-0.069 Sum_probs=64.9
Q ss_pred CcEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecC------CCcEEEEEc--CCCceE--EEEeecccCEEE
Q 005254 516 RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASG------DKTIKIWSI--SDGSCL--KTFEGHTSSVLR 583 (706)
Q Consensus 516 g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~--~~~~~~--~~~~~~~~~i~~ 583 (706)
..+.+||..+.+-... +......-.+++.. ++++++.|+. ...+.+||+ .+.+-. ..+.........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 4688999887643332 22111110222222 5667777664 235777876 333221 111111111112
Q ss_pred EEEEeCCCEEEEEeCC----------------------CCEEEEECCCCe--EEEEeccCCCcEEEEEEcCCCCEEEEEe
Q 005254 584 ASFLTRGAQIVSCGAD----------------------GLVKLWTVRTGE--CIATYDKHEDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 584 ~~~s~~~~~l~~~~~d----------------------g~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 639 (706)
.+...+++.++.|+.+ ..+.+||+.+.+ .+..+......-.++. .++++++.||
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG 324 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGG 324 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEee
Confidence 2334467777777632 257889988654 4444432222222333 3778888888
Q ss_pred CCC------cEEEEECCchhH
Q 005254 640 SDA------LVNLWHDSTAAE 654 (706)
Q Consensus 640 ~dg------~i~vw~~~~~~~ 654 (706)
.++ .+.++++++++.
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSC
T ss_pred eCCCCCEeeeEEEEEEcCcEe
Confidence 653 345557766654
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.17 Score=46.50 Aligned_cols=143 Identities=8% Similarity=0.047 Sum_probs=85.5
Q ss_pred CEEEEEeccCeEEEEECCCCeEEEEeecc-CCCeEEEEE--CC-CCCEEEEe-cCCCcEEEEECCCCeEEEEeeC----C
Q 005254 73 KLLFSSGHSREIRVWDLSTLKCLRSWKGH-DGPAIGMAC--HP-SGGLLATA-GADRKVLVWDVDGGFCTHYFKG----H 143 (706)
Q Consensus 73 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--s~-~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~----~ 143 (706)
.+++.++.||.|.-.|.++|+.+.+++.. ..++....- .+ ++..++.. ..||.|..++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46788999999999999999999998764 123322110 01 23333333 5799999999988865544331 2
Q ss_pred CCcEEEEEEcCCC-------CceEEEEEecCCeEEEEECCCCeeEEEeeccc--ce-----EEEEEEe-----cCCCEEE
Q 005254 144 KGVVSSILFHPDT-------DKSLLFSGSDDATVRVWDLLAKKCVATLDKHF--SR-----VTSMAIT-----SDGSTLI 204 (706)
Q Consensus 144 ~~~v~~~~~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~-----v~~~~~~-----~~~~~l~ 204 (706)
..++.. .=.|-- ....+++|+.+|.+...|+.+|+.+..+.... +. ..|.... ..+..++
T Consensus 91 ~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 91 TSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred cccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 222221 000000 12248999999999999999999998885331 10 1111111 1235677
Q ss_pred EEeCCCEEEEEe
Q 005254 205 SAGRDKVVNLWD 216 (706)
Q Consensus 205 ~~~~dg~i~~w~ 216 (706)
.+..+..+.+.+
T Consensus 170 ig~~~y~v~~~~ 181 (339)
T 2be1_A 170 IGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEECEECC
T ss_pred EecceEEEEEEC
Confidence 777777666666
No 340
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.55 E-value=0.073 Score=50.40 Aligned_cols=211 Identities=13% Similarity=0.102 Sum_probs=101.7
Q ss_pred cceeeceeee-eeeeccceEEcCCCCEEEEeeC-----------CeEEEEEccCCeEEE--eec-CCCccEEEEEEccCC
Q 005254 8 KSYGCEPVLQ-QFYGGGPLVVSSDGSFIACACG-----------ESINIVDLSNASIKS--TIE-GGSDTITALALSPDD 72 (706)
Q Consensus 8 ~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~-----------~~i~i~d~~~~~~~~--~l~-~~~~~i~~l~~s~~~ 72 (706)
..|...+.++ .-....+++. -+++++++|+. +.+.+||+.+.+-.. .+. .....-.++. .++
T Consensus 43 ~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~ 119 (357)
T 2uvk_A 43 KKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNG 119 (357)
T ss_dssp CCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETT
T ss_pred CCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECC
Confidence 5566655554 2222233333 36677776654 258999998876432 222 1112222222 567
Q ss_pred CEEEEEecc---------------------------------------CeEEEEECCCCeE--EEEeeccCCCeEEEEEC
Q 005254 73 KLLFSSGHS---------------------------------------REIRVWDLSTLKC--LRSWKGHDGPAIGMACH 111 (706)
Q Consensus 73 ~~l~s~~~d---------------------------------------~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s 111 (706)
++++.|+.+ ..+.+||..+.+- +..+......-.+++..
T Consensus 120 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~ 199 (357)
T 2uvk_A 120 KAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK 199 (357)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE
T ss_pred EEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE
Confidence 777888753 5799999987653 32222111110222222
Q ss_pred CCCCEEEEecC------CCcEEEEEC--CCCeEEEE--eeCCCCcEE-EEEEcCCCCceEEEEEecC-------------
Q 005254 112 PSGGLLATAGA------DRKVLVWDV--DGGFCTHY--FKGHKGVVS-SILFHPDTDKSLLFSGSDD------------- 167 (706)
Q Consensus 112 ~~~~~l~~~~~------d~~i~vw~~--~~~~~~~~--~~~~~~~v~-~~~~~~~~~~~~l~~~~~d------------- 167 (706)
+++.++.|+. ...+.+||+ .+.+-... +........ +++.. + +. +++.|+.+
T Consensus 200 -~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~-~-~~-iyv~GG~~~~~~~~~~~~g~~ 275 (357)
T 2uvk_A 200 -GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGIS-N-DS-LIFAGGAGFKGSRENYQNGKN 275 (357)
T ss_dssp -TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEE-T-TE-EEEECCEECTTHHHHHHTTCS
T ss_pred -CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEE-C-CE-EEEEcCccccCCcccccccce
Confidence 5666666653 345777887 44432221 111111111 12222 2 23 45555532
Q ss_pred ---------CeEEEEECCCCee--EEEeecccceEEEEEEecCCCEEEEEeCCC------EEEEEeCCCCcceeeec
Q 005254 168 ---------ATVRVWDLLAKKC--VATLDKHFSRVTSMAITSDGSTLISAGRDK------VVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 168 ---------g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~~w~~~~~~~~~~~~ 227 (706)
..+.+||+.+.+- +..+...... ..+...+++.++.|+.++ .+.++++++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 276 YAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp STTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 2577899876543 2233222111 122334777888888543 46666888777665544
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.36 E-value=0.65 Score=45.25 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=62.8
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCeEE--EeecC------CCccEEEEEEccC---CCEEEEEec----------
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIK--STIEG------GSDTITALALSPD---DKLLFSSGH---------- 80 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~--~~l~~------~~~~i~~l~~s~~---~~~l~s~~~---------- 80 (706)
..|+|.|||+++++-..+ .|++++..+++.. ..+.. .......|+|+|+ +.+|..+..
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~ 109 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKE 109 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CC
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccc
Confidence 479999999988877665 6998887656532 22221 2457789999995 555554432
Q ss_pred ---cCeEEEEECCCC-------eEEE-Eeec-cCCCeEEEEECCCCCEEEEecC
Q 005254 81 ---SREIRVWDLSTL-------KCLR-SWKG-HDGPAIGMACHPSGGLLATAGA 122 (706)
Q Consensus 81 ---d~~i~iwd~~~~-------~~~~-~~~~-~~~~v~~~~~s~~~~~l~~~~~ 122 (706)
...|.-|+...+ +.+. .+.. .......|+|.|||.+.++.+.
T Consensus 110 ~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 110 LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 1121 1221 1235789999999987776543
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.28 E-value=0.79 Score=44.64 Aligned_cols=104 Identities=10% Similarity=0.088 Sum_probs=62.5
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEE--EEee------cCCcEEEEEEccC---CCEEEEecC-------
Q 005254 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV--TFRG------HKRGIWSVEFSPV---DQVVITASG------- 556 (706)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~------~~~~v~~~~~s~~---~~~l~~~~~------- 556 (706)
.....|+|.|+|+++++-...+.|++++..++.... .+.. .......|+|+|+ +..|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 456799999999977765444578888865554322 2221 2456779999995 555544432
Q ss_pred ------CCcEEEEEcCCC--c-----eEE-EEee-cccCEEEEEEEeCCCEEEEEeC
Q 005254 557 ------DKTIKIWSISDG--S-----CLK-TFEG-HTSSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 557 ------dg~i~iwd~~~~--~-----~~~-~~~~-~~~~i~~~~~s~~~~~l~~~~~ 598 (706)
...|.-+++..+ + .+. .+.. .......++|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234666665432 1 111 1221 1234688999999987776553
No 343
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.11 E-value=0.78 Score=41.70 Aligned_cols=173 Identities=8% Similarity=0.116 Sum_probs=101.9
Q ss_pred EcCCCCEEEEee---CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc--------------CeEEEEEC
Q 005254 27 VSSDGSFIACAC---GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS--------------REIRVWDL 89 (706)
Q Consensus 27 ~s~dg~~l~~~~---~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d--------------~~i~iwd~ 89 (706)
|+.+|.+|++.. ++.|+..+...... ..+... .+--++++|++|+-+... ..|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSC-EEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCC-EEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 456888998886 34788888654443 334322 234568999999876543 46777787
Q ss_pred CCCeEEEEeeccCCCeEEEEECCCCCEEEEec----CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe
Q 005254 90 STLKCLRSWKGHDGPAIGMACHPSGGLLATAG----ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 165 (706)
..++... +.. .. +..|++++++|+-.. ....|..-+++... ...+..+.. .+|+++++. +..+..
T Consensus 96 dg~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~-iy~t~~ 164 (302)
T 3s25_A 96 NGHGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRY-FYYNNP 164 (302)
T ss_dssp TSCCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTE-EEEECT
T ss_pred CCCcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCE-EEEEeC
Confidence 7665332 221 11 236788999998775 33456666665433 334443433 456777765 333433
Q ss_pred cCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC--CEEEEEeCCC
Q 005254 166 DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD--KVVNLWDLRD 219 (706)
Q Consensus 166 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~w~~~~ 219 (706)
....|.+-++..+.....+.+ ... ..+.|++.+|+-.... ..|..-+++.
T Consensus 165 g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 165 KNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp TTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred CCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 467888888876654443332 222 2356888888766543 2455555443
No 344
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.07 E-value=0.9 Score=42.02 Aligned_cols=239 Identities=12% Similarity=0.090 Sum_probs=125.2
Q ss_pred cceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE--E----eCCCcCeEEEEEecC---CCeEEEEe--cCCC
Q 005254 396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV--G----TGHMGAVGAVAFSKK---LQNFLVSG--SSDH 464 (706)
Q Consensus 396 ~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~----~~~~~~v~~~~~~~~---~~~~l~~~--~~d~ 464 (706)
-.....++ +.|++.. +++--..|.|++++..+++.... + .........++++|+ +..+.++- ..++
T Consensus 31 L~~P~~ia--~~pdG~l-lVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 31 LNSPWGLA--PLPGGDL-LVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp CSSEEEEE--ECTTSCE-EEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred CCCceEEE--EcCCCcE-EEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 33455666 7788764 55555589999998765543222 1 123456789999985 23233322 2445
Q ss_pred eEEEEEecCCCCCCCcccccceeE-EE-eecCcceEEEEEcCCCCEEEEeeC-------------CCcEEEEeCCCc---
Q 005254 465 TIKVWSFDGLSDDAEQPMNLKAKA-VV-AAHGKDINSLAVAPNDSLVCTGSQ-------------DRTACVWRLPDL--- 526 (706)
Q Consensus 465 ~i~i~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~i~~~~~s~~~~~l~~~~~-------------dg~i~i~d~~~~--- 526 (706)
.|.-|.+.............+... .+ .........|+|.|||.+.++.+. .|.|.-++....
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 565566554221100110111111 11 112223567999999987777542 244554554321
Q ss_pred -----cEEEEEeecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcCCCc------------------eEEEEeecccCEE
Q 005254 527 -----VSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGS------------------CLKTFEGHTSSVL 582 (706)
Q Consensus 527 -----~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~------------------~~~~~~~~~~~i~ 582 (706)
.....-.+|. ....++|+|++.+.++= +.|+.=.|--+..+. ++..+..+.....
T Consensus 188 ~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~ 266 (347)
T 3das_A 188 GNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPS 266 (347)
T ss_dssp TCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEE
T ss_pred CCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCc
Confidence 1111112343 34578999987765543 223322222222221 1223322223566
Q ss_pred EEEEEeCCCEEEEEeCCCCEEEEECCCCeE----EEEeccCCCcEEEEEEcCCCCEEEEEe
Q 005254 583 RASFLTRGAQIVSCGADGLVKLWTVRTGEC----IATYDKHEDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~ 639 (706)
.++|. +|..++..-..+.|....+..+.. ...+.+....+..+...|||.++++..
T Consensus 267 G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 267 GIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 77776 455555555566777666655432 223444457899999999998766543
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.05 E-value=1.2 Score=43.41 Aligned_cols=228 Identities=9% Similarity=0.083 Sum_probs=126.9
Q ss_pred EEEEEeeCCCcEEEEeCCCceEEEEEeCC-------------------------CcCeE--EEEEe---cCCCeEEEEec
Q 005254 412 ILIVTGSKDNSVRLWDSESRCCVGVGTGH-------------------------MGAVG--AVAFS---KKLQNFLVSGS 461 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------~~~v~--~~~~~---~~~~~~l~~~~ 461 (706)
..+.+|+..|.++++-+.+++.+..+.-. .+... .+.+. -||+.+++-.-
T Consensus 71 y~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 71 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EEEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence 35889999999999999999988876411 11111 12222 24453344444
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeE-EEeecCcceEEEEEc--CCCCEEEEeeCC-------CcE------------E
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKA-VVAAHGKDINSLAVA--PNDSLVCTGSQD-------RTA------------C 519 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s--~~~~~l~~~~~d-------g~i------------~ 519 (706)
.+..|-..+++..+ ... ....+...+..+.+- |+-.+++++++. |.. .
T Consensus 151 an~RvAri~l~~~~----------~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 151 ANSRVARIRLDIMK----------CDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp TTTEEEEEETTTTE----------EEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred CCcceEEEECCcEe----------eceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 56666666665432 222 223344567777775 677777777642 221 0
Q ss_pred EEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCC---------------cEEEEEc-------------------
Q 005254 520 VWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK---------------TIKIWSI------------------- 565 (706)
Q Consensus 520 i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------------~i~iwd~------------------- 565 (706)
..|..+.+...++.- .+........+++++.++.+.+. .+.++++
T Consensus 221 ~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g 299 (638)
T 3sbq_A 221 AIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK 299 (638)
T ss_dssp EEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred EEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence 112222222222111 11222344566777776655431 2444443
Q ss_pred ------CC----Cce-EEEEeecccCEEEEEEEeCCCEEEEEeC-CCCEEEEECCC------Ce-------EEEEeccCC
Q 005254 566 ------SD----GSC-LKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRT------GE-------CIATYDKHE 620 (706)
Q Consensus 566 ------~~----~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~------~~-------~~~~~~~~~ 620 (706)
+. +.. ...+. -....-.+.++|||++++.++. +.++.++|+.. ++ .+...+. .
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP-~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-G 377 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVP-VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-G 377 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEE-ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-C
T ss_pred eeEEccccccccCCceEEEEe-CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-C
Confidence 32 111 11111 1223446788999999877654 67899999873 11 1333332 3
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 621 DKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 621 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
-.....+|.++|.-..|.-.|..|..|++...
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 45678899999965566678999999998543
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.75 E-value=0.7 Score=48.15 Aligned_cols=191 Identities=10% Similarity=0.096 Sum_probs=99.5
Q ss_pred EEEEeeCC----CcEEEEeCCCceEEEEE-e-----CCCcC-eEEEEEec-CCCeEEEEecCC------CeEEEEEecCC
Q 005254 413 LIVTGSKD----NSVRLWDSESRCCVGVG-T-----GHMGA-VGAVAFSK-KLQNFLVSGSSD------HTIKVWSFDGL 474 (706)
Q Consensus 413 ~l~~~~~d----g~i~i~d~~~~~~~~~~-~-----~~~~~-v~~~~~~~-~~~~~l~~~~~d------~~i~i~~~~~~ 474 (706)
+++.|+.+ ..+.+||..+++..... . ..... -.+++..+ ++. +++.|+.+ ..+.+||....
T Consensus 400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~-lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ-LLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE-EEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE-EEEEcCCCCCCCccccEEEEeCCCC
Confidence 35666543 45788888877654443 2 11111 12333332 444 67777654 24667776543
Q ss_pred CCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC--cEEEEeCCCccEEEEEe-----ecCCcEEEEEEccC
Q 005254 475 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR--TACVWRLPDLVSVVTFR-----GHKRGIWSVEFSPV 547 (706)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~s~~ 547 (706)
. +........ ...-.+++.-.++++++.|+.++ .+.+||..+..-...-. .......++.+..+
T Consensus 479 ~--------W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 479 E--------WSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp E--------EEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred c--------EEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 1 111110111 11112333334788888888655 68999988765332211 11122233555555
Q ss_pred -CCEEEEecC--C-----CcEEEEEcCCCce-----EEEEeec--ccCE-EEEEEEeCCCEEEEEeCC--------CCEE
Q 005254 548 -DQVVITASG--D-----KTIKIWSISDGSC-----LKTFEGH--TSSV-LRASFLTRGAQIVSCGAD--------GLVK 603 (706)
Q Consensus 548 -~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~--~~~i-~~~~~s~~~~~l~~~~~d--------g~i~ 603 (706)
++.++.|+. + ..+.+||+.+.+- -..+... .... .++....+++.++.|+.+ ..+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 667777765 2 3588999987761 1222111 1111 122333337777777743 4699
Q ss_pred EEECCCCeEE
Q 005254 604 LWTVRTGECI 613 (706)
Q Consensus 604 iwd~~~~~~~ 613 (706)
+||+.+.+-.
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999887654
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.51 E-value=1.2 Score=46.45 Aligned_cols=192 Identities=15% Similarity=0.171 Sum_probs=103.4
Q ss_pred CCCCEEEEeeC-----CeEEEEEccCCeEEEee--------cCCCccEEEEEEccCCCEEEEEecc------CeEEEEEC
Q 005254 29 SDGSFIACACG-----ESINIVDLSNASIKSTI--------EGGSDTITALALSPDDKLLFSSGHS------REIRVWDL 89 (706)
Q Consensus 29 ~dg~~l~~~~~-----~~i~i~d~~~~~~~~~l--------~~~~~~i~~l~~s~~~~~l~s~~~d------~~i~iwd~ 89 (706)
.++.++++|+. +.+.+||+.+++-...- ......-.++.+..++++++.||.+ +.+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 56777777763 36899999887643322 1111222333443377777777643 35888998
Q ss_pred CCCeE--EEEeeccCCCeEEEEECCCCCEEEEecCCC--cEEEEECCCCeEEEEee-----CCCCcEEEEEEcCCCCceE
Q 005254 90 STLKC--LRSWKGHDGPAIGMACHPSGGLLATAGADR--KVLVWDVDGGFCTHYFK-----GHKGVVSSILFHPDTDKSL 160 (706)
Q Consensus 90 ~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~ 160 (706)
.+.+- +..+...... .+++.-.+++.++.|+.++ .+.+||..+.+-...-. .......++.+..+. ..+
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~-~~i 553 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS-KQG 553 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT-TEE
T ss_pred CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC-CEE
Confidence 87542 2222211111 2233334788888887544 79999998876433211 111122334444432 334
Q ss_pred EEEEec--C-----CeEEEEECCCCee-----EEEeec---ccceEEEEEEecCCCEEEEEeC--------CCEEEEEeC
Q 005254 161 LFSGSD--D-----ATVRVWDLLAKKC-----VATLDK---HFSRVTSMAITSDGSTLISAGR--------DKVVNLWDL 217 (706)
Q Consensus 161 l~~~~~--d-----g~i~vwd~~~~~~-----~~~~~~---~~~~v~~~~~~~~~~~l~~~~~--------dg~i~~w~~ 217 (706)
++.|+. + ..+.+||+.+.+- -..+.. ....-.+++...+++.++.||. ...+.+||+
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 633 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP 633 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence 566654 2 4688999887761 122211 1111123333344677777764 245788888
Q ss_pred CCCcc
Q 005254 218 RDYSC 222 (706)
Q Consensus 218 ~~~~~ 222 (706)
.+.+-
T Consensus 634 ~t~~W 638 (695)
T 2zwa_A 634 LSETL 638 (695)
T ss_dssp TTTEE
T ss_pred CCCeE
Confidence 76543
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.23 E-value=0.83 Score=41.08 Aligned_cols=230 Identities=11% Similarity=0.032 Sum_probs=112.9
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
..+... +|.++.|-....-.+-........+..++ ......++. . ||.+..|-....-.+.....-...|..+
T Consensus 35 h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia----~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~i 107 (282)
T 3qhy_B 35 HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIA----AGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAI 107 (282)
T ss_dssp EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEE----ECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEE
T ss_pred eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEE----eCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEE
Confidence 333335 89999998664322211111122344442 122332444 4 8999999755422211111123467777
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 527 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 527 (706)
+.... ..+.-. +|.|..|-........... .....|..++...+. .+.-. ||.|+.|-.....
T Consensus 108 a~G~~---hs~al~-~G~v~~wG~n~~gqlg~~~----------~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 108 AAGAW---ASYALK-DGKVIAWGDDSDGQTTVPA----------EAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp EEETT---EEEEEE-TTEEEEEECCTTSTTSCCG----------GGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTS
T ss_pred ECcCC---EEEEEe-CCeEEEecCCCCCcCCCCc----------cCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCC
Confidence 76655 333344 9999999876543211110 112345555554332 22223 6888888654321
Q ss_pred EEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 528 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 528 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
.+..-......|..++...... ++. .||.|+.|-......+..-......|..++-... ..++ .. ||.|+.|=.
T Consensus 171 qlg~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-h~~a-l~-~g~v~~wG~ 244 (282)
T 3qhy_B 171 QTTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSLA-LK-NGKVIAWGS 244 (282)
T ss_dssp TTSCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEEE-EE-TTEEEEEST
T ss_pred CCCCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC-EEEE-EE-CCEEEEecC
Confidence 1111111235677777654333 333 5899999976543222111112235655554333 2333 33 899999965
Q ss_pred CCCeEEEEeccCCCcEEEEEEcCC
Q 005254 608 RTGECIATYDKHEDKIWALAVGKK 631 (706)
Q Consensus 608 ~~~~~~~~~~~~~~~v~~~~~s~~ 631 (706)
....++.. ...|.+++....
T Consensus 245 n~~gq~~v----~~~v~~iaaG~~ 264 (282)
T 3qhy_B 245 SRTAPSSV----QSGVSSIEAGPN 264 (282)
T ss_dssp TCCCCGGG----SSCEEEEEECSS
T ss_pred CCCccccC----CCCcEEEEECcC
Confidence 54333211 335666655443
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.96 E-value=0.58 Score=42.09 Aligned_cols=207 Identities=13% Similarity=0.092 Sum_probs=106.8
Q ss_pred CCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEE
Q 005254 420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (706)
Q Consensus 420 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (706)
||.+..|-....-.+.........|..++..... .++. . ||.+..|-......... +.. ....|..
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~Gqlg~-P~~---------~~~~v~~ 106 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNEDGQTTV-PAE---------ARSGVDA 106 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCTTSTTCC-CGG---------GSSSEEE
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCCCCCCCC-Ccc---------cCCCeEE
Confidence 8888888655322211111223466677765542 3333 4 89999998765432111 111 1235666
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc
Q 005254 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 579 (706)
Q Consensus 500 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 579 (706)
++...+ ..+.-. +|.|+.|-....-.+.........|..++...... ++. . ||.|+.|-......+..-..-..
T Consensus 107 ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~-~~l-~-~G~v~~wG~n~~gqlg~p~~~~~ 180 (282)
T 3qhy_B 107 IAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA-LAV-K-NGGVIAWGDNYFGQTTVPAEAQS 180 (282)
T ss_dssp EEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE-E-TTEEEEEECCTTSTTSCCGGGGS
T ss_pred EECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEE-EEE-E-CCEEEEecCCCCCCCCCceecCC
Confidence 666543 333334 88899986543221111111334577776654333 222 3 78899997654322211111134
Q ss_pred CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 580 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 580 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
.|..++...+ ..+.- .||.|+.|=....-.+..-......|..++...+...++ . ||.+..|--...
T Consensus 181 ~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al--~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 181 GVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLAL--K-NGKVIAWGSSRT 247 (282)
T ss_dssp SEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEE--E-TTEEEEESTTCC
T ss_pred CeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEE--E-CCEEEEecCCCC
Confidence 5665554433 33333 589999996543322211111234577777654433333 3 999999976654
No 350
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.64 E-value=2.7 Score=38.81 Aligned_cols=112 Identities=18% Similarity=0.158 Sum_probs=67.5
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE--Ee----eCCCCcEEEEEEcCC---CCceEEEEE--e
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH--YF----KGHKGVVSSILFHPD---TDKSLLFSG--S 165 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~--~~----~~~~~~v~~~~~~~~---~~~~~l~~~--~ 165 (706)
.+...-.....|+|.|||.++++--..|.|++++..+++... .+ .........|+|+|+ ... +.++- .
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~-lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHM-VYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCE-EEEEEECS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCE-EEEEEecC
Confidence 344344667899999999987776558999999876665322 12 123566899999996 233 23322 2
Q ss_pred cCCeEEEEECCCC----------eeE-EEeec-ccceEEEEEEecCCCEEEEEeCC
Q 005254 166 DDATVRVWDLLAK----------KCV-ATLDK-HFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 166 ~dg~i~vwd~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
.++.|.-|.+..+ +.+ ..+.. ....-..|.|.|||.+.++.+..
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~ 160 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGES 160 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCT
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCC
Confidence 4556666766541 111 12221 11134568999999877776543
No 351
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=93.12 E-value=4.5 Score=36.01 Aligned_cols=186 Identities=9% Similarity=0.019 Sum_probs=108.4
Q ss_pred cCCCCEEEEeeCCe---EEEEEccCCeEEEeecCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCCC------eEEEE
Q 005254 28 SSDGSFIACACGES---INIVDLSNASIKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTL------KCLRS 97 (706)
Q Consensus 28 s~dg~~l~~~~~~~---i~i~d~~~~~~~~~l~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~------~~~~~ 97 (706)
+....++++...+. +.+|+++.++....+. ....|.++.... +..+++.++.+|.++...+... .....
T Consensus 33 ~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~ 111 (276)
T 3no0_A 33 PFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIK 111 (276)
T ss_dssp ETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSC
T ss_pred CCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEe
Confidence 34445556665554 3345555443222243 345666665422 5678999999999999987553 22223
Q ss_pred eeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC---------CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCC
Q 005254 98 WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG---------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168 (706)
Q Consensus 98 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 168 (706)
++. ...+..+....+...++..+..|.+..++... |.....+. ....|..+...++++. ++..+..|
T Consensus 112 lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~--ll~~T~~G 187 (276)
T 3no0_A 112 LTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY--LLVITAKG 187 (276)
T ss_dssp CCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE--EEEEETTS
T ss_pred cCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE--EEEEeCCC
Confidence 332 34555555555666788888889988887632 22222233 2355666655554444 78888999
Q ss_pred eEEEEECCCC-------eeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEE--EeCCC
Q 005254 169 TVRVWDLLAK-------KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL--WDLRD 219 (706)
Q Consensus 169 ~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~--w~~~~ 219 (706)
.++...+..- +-+..+ ...+.+..+....+...++..+.+|.+.. ++..+
T Consensus 188 ~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 188 RVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp CEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred cEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 9988876432 222223 23344555444444456777777887777 76543
No 352
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=92.35 E-value=6.6 Score=35.98 Aligned_cols=239 Identities=9% Similarity=0.060 Sum_probs=126.3
Q ss_pred CEEEEEeccCeEEEEECCCCe---------EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC---C------CC
Q 005254 73 KLLFSSGHSREIRVWDLSTLK---------CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV---D------GG 134 (706)
Q Consensus 73 ~~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~---~------~~ 134 (706)
..+++.+.+|.|+--.+.+.+ .-..++ ....+..+........|+.-+..|.++-... . .|
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 456677778877765543211 111122 2234444444445555665566676655443 2 23
Q ss_pred eEEEEee--CCCCcEEEEEEcCC-CCceEEEEEecCCeEEEEECCCCe-------eEEEeecccceEEEEEEecCCCEEE
Q 005254 135 FCTHYFK--GHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAKK-------CVATLDKHFSRVTSMAITSDGSTLI 204 (706)
Q Consensus 135 ~~~~~~~--~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~ 204 (706)
..+..+- .....|..+...++ .+..+++..+.+|.++--.+.... ....++. .+.+..+........|+
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 3321111 13455655544432 123359999999999998765422 1122333 34555555555666788
Q ss_pred EEeCCCEEEEEeCC--CCccee---------eecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCC
Q 005254 205 SAGRDKVVNLWDLR--DYSCKL---------TVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 273 (706)
Q Consensus 205 ~~~~dg~i~~w~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (706)
..+..|.+..+... ...... .+...+.+..+...++ ...++..+..
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~-----------------------~~~ll~~T~~ 218 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVRE-----------------------GTYLLVATSG 218 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCT-----------------------TCEEEEEETT
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECC-----------------------CCEEEEEeCC
Confidence 88999999888876 322111 1111122222222211 2267888888
Q ss_pred CeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecc
Q 005254 274 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337 (706)
Q Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 337 (706)
|.++.-.+..-...... ...............+..+....+...++..+.+|.+..+...+.+
T Consensus 219 G~~Krt~l~e~~~~~R~-~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~ 281 (327)
T 3uc1_A 219 GYAKRTAIEEYPVQGRG-GKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVR 281 (327)
T ss_dssp SEEEEEEGGGSCBCCTT-SCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSC
T ss_pred CcEEEEEHHHccccCcC-CCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhcc
Confidence 88887765432111110 0111122232323445555556677789999999999988877654
No 353
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=92.25 E-value=6.8 Score=35.90 Aligned_cols=235 Identities=9% Similarity=0.039 Sum_probs=123.7
Q ss_pred EEEEeeCCCcEEEEeCCCc-------eEEEEEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCc--cc
Q 005254 413 LIVTGSKDNSVRLWDSESR-------CCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ--PM 482 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~ 482 (706)
.+++-+.+|.|+--.+.+- +-+.... .....+..+....... .++.-++.|.++-............ -.
T Consensus 5 v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d-~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 5 VVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHD-LILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTS-EEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred EEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCC-EEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 3677778888876543211 1111111 1233444444444434 4666666676655443322111000 00
Q ss_pred ccceeEEEeecCcceEEEEEcC---CCCEEEEeeCCCcEEEEeCCCccE-------EEEEeecCCcEEEEEEccCCCEEE
Q 005254 483 NLKAKAVVAAHGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDLVS-------VVTFRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~ 552 (706)
.......+ .....|..+..-+ +..+++..+.+|.++...+..... ...++. .+.+..+........|+
T Consensus 84 ~i~~~l~l-~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 84 HVANLLAF-QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EHHHHTTC-CTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EHHHccCC-CCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 00000001 1234455554333 578999999999999887654321 112332 34555555555566788
Q ss_pred EecCCCcEEEEEcC--CC---------ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC-------eEEE
Q 005254 553 TASGDKTIKIWSIS--DG---------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG-------ECIA 614 (706)
Q Consensus 553 ~~~~dg~i~iwd~~--~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~ 614 (706)
..+..|.+..+... .- .....+. ....|.++...+++.+|+..+..|.++.-.+... +-+.
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~ 240 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL 240 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE
Confidence 88889988888765 21 1111122 3456777776667779999999999988876432 2122
Q ss_pred Eec--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 615 TYD--KHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 615 ~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
.++ .-.+.+..+....+...++..+.+|.+.-+++..
T Consensus 241 ~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 241 TVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 222 2133455544444445566677788777776543
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=91.74 E-value=17 Score=39.41 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=33.5
Q ss_pred cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEe
Q 005254 538 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE 575 (706)
Q Consensus 538 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 575 (706)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46778888888999999999999999999999987754
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.97 E-value=8.2 Score=37.52 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=61.0
Q ss_pred ccceEEcCCCC--EEEEeeCCeEEEEEccCCe---EEEeec---------CCCccEEEEEEccC----CCEEEEEec--c
Q 005254 22 GGPLVVSSDGS--FIACACGESINIVDLSNAS---IKSTIE---------GGSDTITALALSPD----DKLLFSSGH--S 81 (706)
Q Consensus 22 ~~~~~~s~dg~--~l~~~~~~~i~i~d~~~~~---~~~~l~---------~~~~~i~~l~~s~~----~~~l~s~~~--d 81 (706)
..+|+|.|||+ ++++-..+.|++++..... .+..+. +.......|+|+|+ +.+.++-+. +
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 34799999996 7776666789999754321 112111 12457889999996 433333221 1
Q ss_pred ----------CeEEEEECCC----------CeEEEEee--ccCCCeEEEEECCCCCEEEEecCCC
Q 005254 82 ----------REIRVWDLST----------LKCLRSWK--GHDGPAIGMACHPSGGLLATAGADR 124 (706)
Q Consensus 82 ----------~~i~iwd~~~----------~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~ 124 (706)
..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..+
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 2455566542 23333333 1223467899999998777766544
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.49 E-value=16 Score=35.47 Aligned_cols=247 Identities=11% Similarity=0.025 Sum_probs=116.9
Q ss_pred EEEeeeeeecCCC-EEEEEeeCCCcEEEEeCCCc---eEEEEEeC---------CCcCeEEEEEecC----CCeEEEEec
Q 005254 399 VLCLDTCALSSGK-ILIVTGSKDNSVRLWDSESR---CCVGVGTG---------HMGAVGAVAFSKK----LQNFLVSGS 461 (706)
Q Consensus 399 i~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~---~~~~~~~~---------~~~~v~~~~~~~~----~~~~l~~~~ 461 (706)
...++ +.|++. . ++++...|.|++++.... ..+..+.. .......|+++|+ +. +.++-+
T Consensus 16 P~~~a--~~pdG~~r-l~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~-lYv~yt 91 (463)
T 2wg3_C 16 PVGAL--HSGDGSQR-LFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGK-LYVSYT 91 (463)
T ss_dssp EEEEE--CCSSSSCC-EEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCE-EEEEEE
T ss_pred ceEEE--ECCCCCeE-EEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCE-EEEEEe
Confidence 34555 778885 4 445567899999975432 12222211 1356788999985 33 333322
Q ss_pred C--C----------CeEEEEEecCCCCCCCcccccceeEEE--eecCcceEEEEEcCCCCEEEEeeCCC-----------
Q 005254 462 S--D----------HTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQDR----------- 516 (706)
Q Consensus 462 ~--d----------~~i~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg----------- 516 (706)
. + ..|.-|.+.............+..... .........|+|.|||.+.++.+..+
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~ 171 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDG 171 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTT
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccC
Confidence 1 1 134445554321111111111111111 12233467899999998777655433
Q ss_pred ------cEEEEeCCCc--------------------cEEEEEeecCCcEEEEEEccC-----CC-EEEEecCCC----cE
Q 005254 517 ------TACVWRLPDL--------------------VSVVTFRGHKRGIWSVEFSPV-----DQ-VVITASGDK----TI 560 (706)
Q Consensus 517 ------~i~i~d~~~~--------------------~~~~~~~~~~~~v~~~~~s~~-----~~-~l~~~~~dg----~i 560 (706)
.|.-.+.... ....--.+|.. ...++|.|. |. ++..+...| .-
T Consensus 172 ~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ 250 (463)
T 2wg3_C 172 LSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSA 250 (463)
T ss_dssp CCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC------CE
T ss_pred cCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCC
Confidence 2222333221 00011112322 346899986 33 444443212 12
Q ss_pred EEEEcCCC------ceEEEEeecc-cCEEEEEEEeC-------CCEEEEEeCCCCEEEEECCCCe---EEEEe-c-----
Q 005254 561 KIWSISDG------SCLKTFEGHT-SSVLRASFLTR-------GAQIVSCGADGLVKLWTVRTGE---CIATY-D----- 617 (706)
Q Consensus 561 ~iwd~~~~------~~~~~~~~~~-~~i~~~~~s~~-------~~~l~~~~~dg~i~iwd~~~~~---~~~~~-~----- 617 (706)
.|..+..+ .++..+..|. ..+..+.|-.. |.+ +.+...+.|....+.... ....+ .
T Consensus 251 ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~-f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~ 329 (463)
T 2wg3_C 251 RILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSY-VFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGS 329 (463)
T ss_dssp EEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCE-EEEETTSCEEEEEC-----CCEEEEECEEETTS
T ss_pred eEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceE-EEecCCCcEEEEEeCCCCceeeEEEeecCCccc
Confidence 33333322 2344443221 46777777432 334 445555776666654332 11111 1
Q ss_pred ---cCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEECCc
Q 005254 618 ---KHEDKIWALAVGKKTEMFATGGSD-----ALVNLWHDST 651 (706)
Q Consensus 618 ---~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~ 651 (706)
.....+..+.+.|||.++++.... ..=+||++..
T Consensus 330 ~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~ 371 (463)
T 2wg3_C 330 CRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVD 371 (463)
T ss_dssp SCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEEC
T ss_pred ccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecC
Confidence 123578999999999987766521 2236788763
No 357
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=88.80 E-value=16 Score=34.57 Aligned_cols=248 Identities=11% Similarity=0.105 Sum_probs=119.0
Q ss_pred EEEEecCCCeEEEEECCCCeEEeeccC-cccccccc-CCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecccc----
Q 005254 266 HFITVGERGIVRMWNADSACLYEQKSS-DVTISFEM-DDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK---- 339 (706)
Q Consensus 266 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---- 339 (706)
+.+....+|.|..|-....-.+-.... ........ ......+....+.......++.+.+|.++.|-.....+.
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~ 143 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN 143 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC
Confidence 566777899999997543211000000 00000000 111223344566777788889999999999976543211
Q ss_pred ceeeEEeeEeccc-CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce-----------eeEeeeC-CcceEEEeeeee
Q 005254 340 KMELILSKRLVGY-NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-----------CSYVLAG-HSEIVLCLDTCA 406 (706)
Q Consensus 340 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~ 406 (706)
.........+... ...+..++. .....++.+.+|.++.|-....- ....+.. ....+..++ .
T Consensus 144 ~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia--~ 218 (389)
T 3kci_A 144 RSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIA--C 218 (389)
T ss_dssp CCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE--E
T ss_pred CccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEE--E
Confidence 0111112222222 224555554 45566777788999999764311 0111111 122344443 2
Q ss_pred ecCCCEEEEEeeCCCcEEEEeCCCc----------eEE-EEEeC-CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 407 LSSGKILIVTGSKDNSVRLWDSESR----------CCV-GVGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
-..... .+.-..+|.|..|-.... ... ..+.. ....|..++.... ..++-..+|.|..|-....
T Consensus 219 G~g~~~-t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~---hs~alt~~G~v~~wG~n~~ 294 (389)
T 3kci_A 219 GSGDAQ-TLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ---FSVALTKSGAVYTWGKGDY 294 (389)
T ss_dssp CCSSCE-EEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT---EEEEEETTSCEEEEECCGG
T ss_pred cCCCcE-EEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC---EEEEEeCCCeEEEEeCCCC
Confidence 111233 555567899999954321 111 11111 2224666665444 4555578899999976532
Q ss_pred CCCCCcccc-cceeEEEe-ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 475 SDDAEQPMN-LKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 475 ~~~~~~~~~-~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
......... ........ .....|..++.. ....++...||.|+.|=..
T Consensus 295 GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 295 HRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp GTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEECC
T ss_pred CCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeCC
Confidence 211100000 00011111 112345555543 3344555678888888654
No 358
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=88.52 E-value=14 Score=33.49 Aligned_cols=233 Identities=9% Similarity=-0.006 Sum_probs=120.4
Q ss_pred EEEEeeCCCcEEEEeCCCceEEE---------EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccc
Q 005254 413 LIVTGSKDNSVRLWDSESRCCVG---------VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN 483 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 483 (706)
.+++.+.+|.|+--.+..-+... .+.. ...+..+....... .++..+..|.++-+.............-
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~-~ll~fT~~G~~~~~~~~elp~~~~~a~G 82 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHD-HILCFSSRGRVYSMKVYQLPEATRGARG 82 (307)
T ss_dssp EEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC-EEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCC-EEEEEECCCEEEEEEhhHCcCCCCCCCC
Confidence 37778888888776654322111 1122 23333333333333 5666777787666655432211110000
Q ss_pred c--ceeEEEeecCcceEEEEEc---CCCCEEEEeeCCCcEEEEeCCCcc-------EEEEEeecCCcEEEEEEccCCCEE
Q 005254 484 L--KAKAVVAAHGKDINSLAVA---PNDSLVCTGSQDRTACVWRLPDLV-------SVVTFRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 484 ~--~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l 551 (706)
. .....+ .....|.++..- .++.+++..+.+|.++...+.... ....+..+ +.+..+........+
T Consensus 83 ~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i 160 (307)
T 1zi0_A 83 RPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEV 160 (307)
T ss_dssp EEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEE
T ss_pred eEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEE
Confidence 0 000011 233445555432 356678899999999988764221 11123333 555555555555667
Q ss_pred EEecCCCcEEEEEcCCC---------ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC---------eEE
Q 005254 552 ITASGDKTIKIWSISDG---------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG---------ECI 613 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---------~~~ 613 (706)
+..+.+|.+..++...- ...-.+. ....|.++....++..|++.+..|.++-.++... ...
T Consensus 161 ~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~ 239 (307)
T 1zi0_A 161 MLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 239 (307)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEES
T ss_pred EEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEe
Confidence 77788888888876421 1111222 3356766655556678899999999988877321 112
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 614 ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 614 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
..+..-.+.+..+....+...++..+.+|.+.-..+.
T Consensus 240 ~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 240 IKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred eEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence 2222223455554443344455566777777666554
No 359
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=86.60 E-value=22 Score=33.66 Aligned_cols=291 Identities=10% Similarity=0.075 Sum_probs=125.5
Q ss_pred eEEEEecCCCeEEEEECCCCeEEeeccC-ccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccc---
Q 005254 265 IHFITVGERGIVRMWNADSACLYEQKSS-DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK--- 340 (706)
Q Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--- 340 (706)
..++....+|.|..|-....-.+-.... ........ ..........+.-.....++.+.+|.++.|-......-.
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v-~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPC-EALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEEC-HHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEec-ccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 4677888999999996544211100000 00000000 000011222334455667788899999999755432110
Q ss_pred -eeeEEeeEecccCc-eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce-----------eeEeeeC-CcceEEEeeeee
Q 005254 341 -MELILSKRLVGYNE-EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-----------CSYVLAG-HSEIVLCLDTCA 406 (706)
Q Consensus 341 -~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~ 406 (706)
........+..... .+..+.. .......+..+.+|.|+.|-....- ....+.. ....+..++
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i-~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va--- 165 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAV-NSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA--- 165 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEE-CTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE---
T ss_pred cCCccCCEEcccccCCceeEEEE-CcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEE---
Confidence 11111222222222 1222222 2355666777888999999754311 1111111 112344443
Q ss_pred ecCCCEEEEEeeCCCcEEEEeCCCc----------e-EEEEEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 407 LSSGKILIVTGSKDNSVRLWDSESR----------C-CVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~i~d~~~~----------~-~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
..... .+.-..+|.|+.|-.... . ...... .....|..++...... ..+....+|.|..|-....
T Consensus 166 -~G~~h-s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~-~t~~l~~~G~v~~wG~n~~ 242 (389)
T 3kci_A 166 -AGGAH-SACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDA-QTLCLTDDDTVWSWGDGDY 242 (389)
T ss_dssp -ECSSE-EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSC-EEEEEETTTEEEEEECCGG
T ss_pred -eCcCe-EEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCc-EEEEEccCCEEEEEeCCCC
Confidence 12223 455567899999964321 0 111111 1233455665543212 5566678899999975432
Q ss_pred CCCCCcccccceeE-EEe-ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc--------c---EEEEEee-cCCcEE
Q 005254 475 SDDAEQPMNLKAKA-VVA-AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--------V---SVVTFRG-HKRGIW 540 (706)
Q Consensus 475 ~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--------~---~~~~~~~-~~~~v~ 540 (706)
.............. ... .....|..++.. ....++-..+|.|+.|-.... . ....+.. ....|.
T Consensus 243 GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~ 320 (389)
T 3kci_A 243 GKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVI 320 (389)
T ss_dssp GTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEE
T ss_pred CCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEE
Confidence 21111000000111 111 112235555543 334445567888999864321 0 1111111 123466
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEcCC
Q 005254 541 SVEFSPVDQVVITASGDKTIKIWSISD 567 (706)
Q Consensus 541 ~~~~s~~~~~l~~~~~dg~i~iwd~~~ 567 (706)
.++... ...+....||.|+.|-...
T Consensus 321 ~ia~G~--~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 321 AIATGS--LHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEECS--SEEEEEETTCCEEEEECCT
T ss_pred EEEecc--CeEEEECCCCCEEEeeCCC
Confidence 665543 3344446788888887643
No 360
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=85.97 E-value=23 Score=33.17 Aligned_cols=181 Identities=12% Similarity=0.185 Sum_probs=106.1
Q ss_pred ceEEcCCCCEEEEeeC----------------CeEEEEEccCC--eEEEeecCC------CccEEEEEEc---cC----C
Q 005254 24 PLVVSSDGSFIACACG----------------ESINIVDLSNA--SIKSTIEGG------SDTITALALS---PD----D 72 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~----------------~~i~i~d~~~~--~~~~~l~~~------~~~i~~l~~s---~~----~ 72 (706)
.+.+.+++++-+.=.+ -.|.+||+.++ ++++++.-. ...+..+++. |+ +
T Consensus 91 ~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~ 170 (381)
T 3q6k_A 91 QPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSE 170 (381)
T ss_dssp EEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCS
T ss_pred EEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCc
Confidence 4888888877664433 26899999999 888766542 3468889988 22 3
Q ss_pred CEEEEEe-ccCeEEEEECCCCeEEEEeec----c--------------CCCeEEEEECCC----CCEEEEecCCCcEEEE
Q 005254 73 KLLFSSG-HSREIRVWDLSTLKCLRSWKG----H--------------DGPAIGMACHPS----GGLLATAGADRKVLVW 129 (706)
Q Consensus 73 ~~l~s~~-~d~~i~iwd~~~~~~~~~~~~----~--------------~~~v~~~~~s~~----~~~l~~~~~d~~i~vw 129 (706)
.++..+. ..+.|.|+|+.+++.-+.+.. . ...|..|++||+ +++|....-.+ -++|
T Consensus 171 ~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly 249 (381)
T 3q6k_A 171 TFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVY 249 (381)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEE
T ss_pred cEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEE
Confidence 4444443 367899999999876655421 0 247888999998 77777665433 2344
Q ss_pred ECCC-----C---eEEEEeeCC--CCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC-C---eeEEEeec--ccceEEE
Q 005254 130 DVDG-----G---FCTHYFKGH--KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-K---KCVATLDK--HFSRVTS 193 (706)
Q Consensus 130 ~~~~-----~---~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~---~~~~~~~~--~~~~v~~ 193 (706)
.+.+ . ..+..+... ...-..++..+ .+..++++--..+.|..|+..+ . +....+.. .-.....
T Consensus 250 ~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~-~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~ 328 (381)
T 3q6k_A 250 SVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDP-KTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTD 328 (381)
T ss_dssp EEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECT-TTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEE
T ss_pred EEEHHHhhCcchhhceEEeeecCCCCCcceEEEeC-CCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCe
Confidence 4421 1 112222111 12334455542 2344566777788899999865 1 12222211 2234666
Q ss_pred EEEecCCCEEEEE
Q 005254 194 MAITSDGSTLISA 206 (706)
Q Consensus 194 ~~~~~~~~~l~~~ 206 (706)
+.+.++|.+.+..
T Consensus 329 ~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 329 ISVDSKGGLWFMS 341 (381)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEECCCCeEEEEE
Confidence 7666666543433
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.70 E-value=49 Score=35.91 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=33.5
Q ss_pred CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec
Q 005254 580 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617 (706)
Q Consensus 580 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (706)
.+.+++..++..++++.+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777788888899999999999999999999988764
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=84.55 E-value=21 Score=31.65 Aligned_cols=205 Identities=13% Similarity=0.071 Sum_probs=116.5
Q ss_pred CccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC-CCcEEEEEecCCcEEEE
Q 005254 303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE-EEQYLAVATNIEQVQVY 381 (706)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~~~~i~~~ 381 (706)
....+..+......+.++..++.|.++.....+.|.....- +....+.+..+.. .+ ++..++..+..|.+...
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-----ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~ 95 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-----LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKI 95 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-----CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEE
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-----cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEE
Confidence 45667777777888899999999999987766655332111 1334566666644 32 56789999999999998
Q ss_pred eCCCce------eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC---------ceEEEEEeCCCcCeEE
Q 005254 382 DLSSMS------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---------RCCVGVGTGHMGAVGA 446 (706)
Q Consensus 382 d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~v~~ 446 (706)
.+.... ....+... +.+..+. ....... ++..+..|.+..+.... |.....+. ....|.+
T Consensus 96 ~l~~~~~~~~G~~~i~lkeg-D~l~~~~--~~~~~~~-ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~ 170 (276)
T 3no0_A 96 PLAEFEYKAQGMPIIKLTEG-DEVVSIA--SSVDETH-ILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSG 170 (276)
T ss_dssp EGGGTTTCSTTEECSCCCTT-CCEEEEE--ECCSSCE-EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEE
T ss_pred EHHHhhhhcCCeEEEecCCC-CEEEEEE--EeCCCCE-EEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEE
Confidence 875432 11122222 3333332 2233444 77778888887776432 21211222 2355666
Q ss_pred EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEE--EeC
Q 005254 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV--WRL 523 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i--~d~ 523 (706)
+...+++. .++..+..|.++...+.......... +....+ .....+..+....+...++..+.+|.+.. ++.
T Consensus 171 ~~~~~~~~-~ll~~T~~G~~kr~~~~e~~~~~R~g---kGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~ 244 (276)
T 3no0_A 171 LRIWNGEP-YLLVITAKGRVKKISHEEIPKTNRGV---KGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQ 244 (276)
T ss_dssp EEEESSCS-EEEEEETTSCEEEEEGGGSCCCCTTC---CCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEG
T ss_pred EEEeCCCC-EEEEEeCCCcEEEeEHHHcccCCCCC---cceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCH
Confidence 55555444 67888889999888876543211100 011111 22333444433333445566666676666 654
No 363
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=83.33 E-value=26 Score=31.78 Aligned_cols=239 Identities=13% Similarity=0.136 Sum_probs=125.1
Q ss_pred cCCCEEEEEeccCeEEEEECCCCeEEE---------EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC-------
Q 005254 70 PDDKLLFSSGHSREIRVWDLSTLKCLR---------SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG------- 133 (706)
Q Consensus 70 ~~~~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~------- 133 (706)
++..++++.+.+|.|+--.+...+... .++.. ..+..+........++..+..|.++-.....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 456778888999999887664432111 12322 3344444444555677777788777666532
Q ss_pred --CeE---EEEeeCCCCcEEEEEEcCC-CCceEEEEEecCCeEEEEECCCCe-------eEEEeecccceEEEEEEecCC
Q 005254 134 --GFC---THYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAKK-------CVATLDKHFSRVTSMAITSDG 200 (706)
Q Consensus 134 --~~~---~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~ 200 (706)
|.. ...+. ....|..+...++ .....++..+..|.++...+.... ....+.. .+.+..+....++
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 111 01122 2344555544331 112237788999999988774322 2222333 4566666665556
Q ss_pred CEEEEEeCCCEEEEEeCCCCcce-------eee--cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEec
Q 005254 201 STLISAGRDKVVNLWDLRDYSCK-------LTV--PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 271 (706)
Q Consensus 201 ~~l~~~~~dg~i~~w~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (706)
..++..+.+|.+..+...+-... ..+ ...+.+..+....+ ...+++.+
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~-----------------------~~~l~~vt 219 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKE-----------------------NPYLLIVS 219 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTT-----------------------CSEEEEEE
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECC-----------------------CCeEEEEE
Confidence 67889999999999887642211 111 11112222221111 12577788
Q ss_pred CCCeEEEEECCCCeEEeeccCccccccccC-CCccceeEEEEccCCCeeEEEeeCCceEEEEeee
Q 005254 272 ERGIVRMWNADSACLYEQKSSDVTISFEMD-DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 335 (706)
Q Consensus 272 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 335 (706)
..|..+...+..-......... ....... .....+.......++..++..+..|.+.-.....
T Consensus 220 ~~G~~kr~~~~e~~~~~R~~kG-v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 220 ENGYGKRLNMSKISELKRGATG-YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp TTSEEEEEEGGGSCBCCTTCCC-EECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred CCCceEEEEHHHhcccCCCCCC-EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 8888888776543221111111 1111222 2233444444556677788888888765554443
No 364
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=82.67 E-value=3.9 Score=40.92 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=44.3
Q ss_pred ceEEcCCCCEEEEeeCC-------------eEEEEEccCCeEEEeecCC-CccEEEEEEccCCCEEEEE
Q 005254 24 PLVVSSDGSFIACACGE-------------SINIVDLSNASIKSTIEGG-SDTITALALSPDDKLLFSS 78 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-------------~i~i~d~~~~~~~~~l~~~-~~~i~~l~~s~~~~~l~s~ 78 (706)
+|+|+|+|++++.-.++ .+.+.+..+++..+.+.++ ...++.++|+||++.|.+.
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 79999999977665432 4677788889988888776 4589999999999988765
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=82.51 E-value=28 Score=31.50 Aligned_cols=249 Identities=12% Similarity=0.085 Sum_probs=125.3
Q ss_pred cCCCEEEEEeccCeEEEEECCCCeEEE---------EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC--------
Q 005254 70 PDDKLLFSSGHSREIRVWDLSTLKCLR---------SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD-------- 132 (706)
Q Consensus 70 ~~~~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~-------- 132 (706)
|+..++++.+.+|.|+--.+.+.+..+ .++.. ..+..+........|+..+..|.++-....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 455678888999999877765433221 12222 333344444445556666677876665542
Q ss_pred -CCeEEE---EeeCCCCcEEEEEEcCC-CCceEEEEEecCCeEEEEECCCC-------eeEEEeecccceEEEEEEecCC
Q 005254 133 -GGFCTH---YFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAK-------KCVATLDKHFSRVTSMAITSDG 200 (706)
Q Consensus 133 -~~~~~~---~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~ 200 (706)
.|..+. .+. ....|..+...++ .+...++..+.+|.++--.+... .....+..+ +.+..+....+.
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 223221 122 3445666544321 12234888899999999876422 122223333 556565555556
Q ss_pred CEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEE
Q 005254 201 STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 280 (706)
Q Consensus 201 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 280 (706)
..++..+.+|.+..++..+-..... ....+..+... ++........ ......++..+..|..+-.+
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr--~a~Gv~~i~L~-~~d~Vv~~~~-----------~~~~~~ll~~T~~G~~Kr~~ 223 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGC--NTTGVRGIRLG-EGDKVVSLIV-----------PRGDGAILTATQNGYGKRTA 223 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCT--TCCCEECCCCC-TTCCEEEEEC-----------CCSSCEEEEEETTSEEEEEC
T ss_pred CEEEEECCCCcEEEEEHHHcCccCC--CCCCeEeEEeC-CCCEEEEEEE-----------ecCCCEEEEEEcCCceEEEE
Confidence 6788888999988887654322111 00111111111 1111100000 00012577788888888776
Q ss_pred CCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeec
Q 005254 281 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 336 (706)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 336 (706)
+..-... ..................+..+....+...++..+.+|.+..+.....
T Consensus 224 ~~e~~~~-~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 224 VAEYPTK-SRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp GGGSCCC-CTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred HHHhccC-CCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 5431111 000111112223333455556555566777889999998887776654
No 366
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=81.53 E-value=31 Score=31.32 Aligned_cols=191 Identities=12% Similarity=0.116 Sum_probs=106.1
Q ss_pred EEEEeeCCCcEEEEeCCCceE-------EE--EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcc--
Q 005254 413 LIVTGSKDNSVRLWDSESRCC-------VG--VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP-- 481 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-- 481 (706)
.+++.+.+|.|+-..+..-+. +. .+.. ...+..+....... .++..+..|.++-+............
T Consensus 10 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~-~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 10 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHD-YLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTC-EEEEEETTSEEEEEEGGGSCC-------
T ss_pred EEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCC-EEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence 377888899988775432211 11 1122 23344444443333 57777888887777654321110000
Q ss_pred cccceeEEEeecCcceEEEEEcC---CCCEEEEeeCCCcEEEEeCCCcc-------EEEEEeecCCcEEEEEEccCCCEE
Q 005254 482 MNLKAKAVVAAHGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDLV-------SVVTFRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l 551 (706)
........+. ....|..+...+ +..+++..+.+|.++...+.... ....+.. .+.+..+....++..+
T Consensus 88 ~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 88 QNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKV 165 (312)
T ss_dssp CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEE
T ss_pred cChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEE
Confidence 0000000111 223444444332 46678888999999988774332 2222332 4556666655556678
Q ss_pred EEecCCCcEEEEEcCCC---------ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 552 ITASGDKTIKIWSISDG---------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
+..+.+|.+..+....- .....+. ....+..+....++..|++.+..|..+..++.
T Consensus 166 ~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred EEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 88889999888887431 1112222 23456666655566788899999999988875
No 367
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=80.99 E-value=5.4 Score=39.36 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=43.9
Q ss_pred ceEEcCCCCEEEEeeC-------------CeEEEEEccCCeEEEeecCC-CccEEEEEEccCCCEEEEEe
Q 005254 24 PLVVSSDGSFIACACG-------------ESINIVDLSNASIKSTIEGG-SDTITALALSPDDKLLFSSG 79 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~-------------~~i~i~d~~~~~~~~~l~~~-~~~i~~l~~s~~~~~l~s~~ 79 (706)
.|+|+++|.+.+.... +.+..++..++++...+.+. ...++.++||||++.|.++-
T Consensus 480 nL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred ceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 7999999988774432 25788888889887777654 35799999999999988763
No 368
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.43 E-value=78 Score=35.28 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=31.7
Q ss_pred CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec
Q 005254 580 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617 (706)
Q Consensus 580 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (706)
.+.+++..++..+|++.+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556667788899999999999999999999887753
No 369
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=78.12 E-value=68 Score=33.28 Aligned_cols=233 Identities=12% Similarity=0.069 Sum_probs=120.7
Q ss_pred eeecCCCEEEEEeeCCC----cEEEEeCCCceEEEE-Ee-CCCc------CeEEEEEecCCCeEEEEe----------cC
Q 005254 405 CALSSGKILIVTGSKDN----SVRLWDSESRCCVGV-GT-GHMG------AVGAVAFSKKLQNFLVSG----------SS 462 (706)
Q Consensus 405 ~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~-~~-~~~~------~v~~~~~~~~~~~~l~~~----------~~ 462 (706)
|+.|+++.++++-+..| .++++|+.+++.+.. +. .... ....++|..+.. ++++. +.
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~-~~~~~~~~~~~~~~~~~ 214 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT-IIFNLVLHKNEITSSLY 214 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTE-EEECCCCSTTCBCTTSS
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCE-EEEEeCCCCCCcCcCCC
Confidence 46788888666655554 599999999987631 11 0000 113457764433 44432 12
Q ss_pred CCeEEEEEecCCCCCCCcccccceeEEEeecCcc-eEEEEEcCCCCE-----EEEee---CCCcEEEEeCCC--ccEEEE
Q 005254 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD-INSLAVAPNDSL-----VCTGS---QDRTACVWRLPD--LVSVVT 531 (706)
Q Consensus 463 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~-----l~~~~---~dg~i~i~d~~~--~~~~~~ 531 (706)
...|+.|.+-+... ....++...... -.....++++++ +++.+ ....+.+.+... ++ ...
T Consensus 215 ~~~v~~~~~Gt~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~ 285 (711)
T 4hvt_A 215 PNSLYIWKRGESIE--------KAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQK 285 (711)
T ss_dssp BCEEEEEETTSCGG--------GCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEE
T ss_pred CCEEEEEECCCChH--------HCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceE
Confidence 34577777654311 122223322222 234555666662 34333 224466666543 32 222
Q ss_pred EeecCCcEEEEEEccCCCEEEEe----------cCCCcEEEEEcCCCc-------eEEE-Eee-cccCEEEEEEEeCCCE
Q 005254 532 FRGHKRGIWSVEFSPVDQVVITA----------SGDKTIKIWSISDGS-------CLKT-FEG-HTSSVLRASFLTRGAQ 592 (706)
Q Consensus 532 ~~~~~~~v~~~~~s~~~~~l~~~----------~~dg~i~iwd~~~~~-------~~~~-~~~-~~~~i~~~~~s~~~~~ 592 (706)
+...... .+..+.++.+++.. ...+.|.+.|+.++. .... +.. ....+..+.+..+ ..
T Consensus 286 l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l 362 (711)
T 4hvt_A 286 INMPSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RV 362 (711)
T ss_dssp CCSCTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CE
T ss_pred eecCCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EE
Confidence 3222221 12334456555533 146779999987642 2233 322 2335667777765 56
Q ss_pred EEEEeCCC--CEEEEECCCCe-EEEE-eccC-CCcEEEEEEcCCCCEE-EEEeC---CCcEEEEECC
Q 005254 593 IVSCGADG--LVKLWTVRTGE-CIAT-YDKH-EDKIWALAVGKKTEMF-ATGGS---DALVNLWHDS 650 (706)
Q Consensus 593 l~~~~~dg--~i~iwd~~~~~-~~~~-~~~~-~~~v~~~~~s~~~~~l-~~~~~---dg~i~vw~~~ 650 (706)
+++...++ .+.++|+.+++ .+.. +... .+.+....+++++..+ ++.+. -+.+..+++.
T Consensus 363 ~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 363 FLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 77777776 46778877775 2333 3221 3457667777776544 44332 3567777765
No 370
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=76.01 E-value=51 Score=30.74 Aligned_cols=237 Identities=9% Similarity=0.038 Sum_probs=119.6
Q ss_pred ecCCCEEEEEeeCCCcEEEEeCCC---------ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCC
Q 005254 407 LSSGKILIVTGSKDNSVRLWDSES---------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477 (706)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 477 (706)
.++... +++.+.+|.|+--.+.. +..-..++ ....+..+....... .++..+..|.++-+........
T Consensus 4 I~~e~~-~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d-~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 4 IAPEDV-VVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHD-TLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCE-EEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTC-EEEEEETTSEEEEEEGGGSCBC
T ss_pred ccCCCE-EEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCC-EEEEEeCCCeEEEEEHHHCcCC
Confidence 345554 88889999998764321 11222222 234555555444444 5666677777666554332111
Q ss_pred CCccc--ccceeEEEeecCcceEEEEEcC---CCCEEEEeeCCCcEEEEeCCCccE-------EEEEeecCCcEEEEEEc
Q 005254 478 AEQPM--NLKAKAVVAAHGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDLVS-------VVTFRGHKRGIWSVEFS 545 (706)
Q Consensus 478 ~~~~~--~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~v~~~~~s 545 (706)
..... .......+ .....|.++..-. ++.+|+.++..|.++...+..... ...+.. .+.+..+...
T Consensus 81 ~r~a~G~~i~~ll~L-~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~ 158 (370)
T 3l6v_A 81 GSNARGRPIINWIPL-ESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALT 158 (370)
T ss_dssp CTTSCCEEGGGSCCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEE
T ss_pred CcccCCcCHhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEe
Confidence 00000 00000011 2334455554332 456899999999999887643221 112222 3445555555
Q ss_pred cCCCEEEEecCCCcEEEEEcCCC---------ceEEEEeecccCEEEEEEEe----------------------------
Q 005254 546 PVDQVVITASGDKTIKIWSISDG---------SCLKTFEGHTSSVLRASFLT---------------------------- 588 (706)
Q Consensus 546 ~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~i~~~~~s~---------------------------- 588 (706)
.....++..+.+|.+..++...- ...-.+. ....|.++...+
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~ 237 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAV 237 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC--------------------------
T ss_pred CCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccc
Confidence 55566777788888777775321 1111121 234455554443
Q ss_pred -------CCCEEEEEeCCCCEEEEECCCC-------eEEEE--eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 589 -------RGAQIVSCGADGLVKLWTVRTG-------ECIAT--YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 589 -------~~~~l~~~~~dg~i~iwd~~~~-------~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
++..+++.+..|..+...+..- +-+.. +....+.+..+.+..++..++..+..|.+.-..+
T Consensus 238 ~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 238 IDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp ---------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEG
T ss_pred cccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeH
Confidence 4568999999999888877532 11222 2222344444433333334444555665554443
No 371
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=74.88 E-value=61 Score=31.04 Aligned_cols=244 Identities=8% Similarity=0.016 Sum_probs=114.2
Q ss_pred EEEEecCCCeEEEEECCCCeEEeeccCc---cccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEe--eecccc-
Q 005254 266 HFITVGERGIVRMWNADSACLYEQKSSD---VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTT--VEVPEK- 339 (706)
Q Consensus 266 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~- 339 (706)
+.+....+|.|+.|-....-.+-..... ........ ....+ ..+.......++.+.+|.++.|-. ......
T Consensus 86 h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i--~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG 162 (423)
T 3mvd_K 86 HNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKA--LCISAGDSHSACLLEDGRVFAWGSFRDSHGNMG 162 (423)
T ss_dssp EEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCE--EEEEECSSEEEEEETTSCEEEEECEECSSSEEE
T ss_pred eEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCE--EEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcC
Confidence 6677788999999976543111110000 00000011 11223 334455677788899999999986 211100
Q ss_pred --ceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCcee-----------------------eEeeeC
Q 005254 340 --KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-----------------------SYVLAG 394 (706)
Q Consensus 340 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~-----------------------~~~~~~ 394 (706)
................+..++. ...+.++.+.+|.++.|-....-. ......
T Consensus 163 ~~~~~~~~~p~~~~~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~ 239 (423)
T 3mvd_K 163 LTIDGNKRTPIDLMEGTVCCSIAS---GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIIT 239 (423)
T ss_dssp SBTTBCEEEEEESSTTCCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCT
T ss_pred cCCCCCCceeeEecCCCcEEEEec---CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeec
Confidence 0000011111122345556654 455667777889999997542111 111111
Q ss_pred CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC-----------ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC
Q 005254 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-----------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD 463 (706)
Q Consensus 395 ~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 463 (706)
....+..+. . . ....++.-..+|.+..|-... .............|..++.... ..+....+
T Consensus 240 ~~~~v~~i~--~-g-~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~---ht~alt~~ 312 (423)
T 3mvd_K 240 RAKPFEAIW--A-T-NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQH---HTVILTTD 312 (423)
T ss_dssp TCCCEEEEE--E-E-TTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSS---EEEEEETT
T ss_pred CCccEEEEE--E-C-CcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccC---eEEEEeCC
Confidence 122333332 1 1 222233336788898885332 1111111111345666655443 45566778
Q ss_pred CeEEEEEecCCCCCCCcccc--cceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 464 HTIKVWSFDGLSDDAEQPMN--LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 464 ~~i~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
|.|..|-............. .............|..++.... .-++-..||.|+.|=..
T Consensus 313 G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n 373 (423)
T 3mvd_K 313 LKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSG 373 (423)
T ss_dssp CCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEECC
T ss_pred CcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCC
Confidence 99999976432111100000 0011111112225666665433 33444678888888643
No 372
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=74.37 E-value=52 Score=30.01 Aligned_cols=251 Identities=10% Similarity=0.037 Sum_probs=125.3
Q ss_pred cCCCEEEEEeccCeEEEEECCCCe----EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC---------CCeE
Q 005254 70 PDDKLLFSSGHSREIRVWDLSTLK----CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD---------GGFC 136 (706)
Q Consensus 70 ~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~---------~~~~ 136 (706)
|+..++++.+.+|.|+--.+.+.+ .-..++.. ..+..+........|+..+..|.++-.... .|.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 556678888889988876553211 11123323 344444444445566666777876666542 2332
Q ss_pred EEE---eeCCCCcEEEEEEcCC-CCceEEEEEecCCeEEEEECCCC--------eeEEEeecccceEEEEEEecCCCEEE
Q 005254 137 THY---FKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAK--------KCVATLDKHFSRVTSMAITSDGSTLI 204 (706)
Q Consensus 137 ~~~---~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~ 204 (706)
+.. +. ....|..+...++ .+...++..+.+|.++--.+... .....+... +.+..+........++
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 211 22 2344655543332 11234888899999999877422 111223322 5565655555566788
Q ss_pred EEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 205 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
..+.+|.+..+....-..... ....+..+...+ +........ .. .....++..+..|..+..++..-
T Consensus 160 l~T~~G~~irf~~~ev~~~gR--~a~GV~~i~L~~-~d~Vv~~~~---------~~-~~~~~ll~vt~~G~gKr~~~~e~ 226 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGV--RAAGVKGMNLKE-GDYIVSGQL---------IT-SKDESIVVATQRGAVKKMKLTEF 226 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCS--SCCCEECCCCCT-TCCEEEEEE---------EC-CTTCEEEEEETTSEEEEEEGGGS
T ss_pred EEeCCCcEEEEEHHHCcccCC--CCcCEEEEEeCC-CCEEEEEEE---------Ec-CCCcEEEEEECCCceEEEEHHHc
Confidence 889999998888754322111 011111111111 111100000 00 00114667777777776665432
Q ss_pred eEEeeccCccccccc-cCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecc
Q 005254 285 CLYEQKSSDVTISFE-MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 337 (706)
......... ..... .......+..+....+++.+++.+.+|.+......+.+
T Consensus 227 ~~~~Rg~kG-v~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~i~ 279 (323)
T 1wp5_A 227 EKATRAKRG-VVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDIR 279 (323)
T ss_dssp CCCCTTSCC-EECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGGSC
T ss_pred cccCCCCCC-EECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhhcC
Confidence 111111111 11111 11222244444455566778889999988877776543
No 373
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=73.10 E-value=63 Score=30.47 Aligned_cols=174 Identities=11% Similarity=0.013 Sum_probs=85.0
Q ss_pred CEEEEeeCCeEEEEEccC-CeEEEee--cCCCccEEEEEEcc--CCCEEEEEeccC----eEEEEECCCC---eEEEE--
Q 005254 32 SFIACACGESINIVDLSN-ASIKSTI--EGGSDTITALALSP--DDKLLFSSGHSR----EIRVWDLSTL---KCLRS-- 97 (706)
Q Consensus 32 ~~l~~~~~~~i~i~d~~~-~~~~~~l--~~~~~~i~~l~~s~--~~~~l~s~~~d~----~i~iwd~~~~---~~~~~-- 97 (706)
..|.++....+.+++... ++.-..+ ......|.+|++.| ++.+.| ++..| .|...+ ..+ +.+..
T Consensus 23 g~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred CEEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccc
Confidence 355566666677776543 2211111 12345799999998 444444 44444 343332 222 22221
Q ss_pred -eec--------cCCCeEEEEECCC--CCEEEEecCCCcEEEEECCCCeEEEEee-------------------CCCCcE
Q 005254 98 -WKG--------HDGPAIGMACHPS--GGLLATAGADRKVLVWDVDGGFCTHYFK-------------------GHKGVV 147 (706)
Q Consensus 98 -~~~--------~~~~v~~~~~s~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~-------------------~~~~~v 147 (706)
+.. +...|.++++.|. ...|.+++..+.|...+ +.++.-..+. .....+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 111 1125788999872 44555555555444432 2233222221 122457
Q ss_pred EEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecc-------------cceEEEEEEecC-CCEEEEEeCCC
Q 005254 148 SSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH-------------FSRVTSMAITSD-GSTLISAGRDK 210 (706)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~-~~~l~~~~~dg 210 (706)
.+|.+.|..... ++.+..++.|...+ ..++.-..+... ...+.++.+.|+ ...|+++...+
T Consensus 180 ~~i~~d~~~~~~-l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 180 HSILVDPRDPKH-LYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEECTTCTTC-EEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred eEEEECCCCCCE-EEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 899998843322 44454444444432 223322222110 124888999886 35677766544
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.84 E-value=34 Score=38.17 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=32.0
Q ss_pred cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEe
Q 005254 538 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE 575 (706)
Q Consensus 538 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 575 (706)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556667788999999999999999999999988754
No 375
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=70.08 E-value=74 Score=29.99 Aligned_cols=130 Identities=8% Similarity=0.011 Sum_probs=61.8
Q ss_pred ceEEEEEcCC-CCEEEEeeCCCcEEEEeCCCccEEEEEee--cC---CcEEEEEEccC-CCEEEEecC-----------C
Q 005254 496 DINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFRG--HK---RGIWSVEFSPV-DQVVITASG-----------D 557 (706)
Q Consensus 496 ~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~v~~~~~s~~-~~~l~~~~~-----------d 557 (706)
.+.++++.|+ ...|.++...+ |...+- .++.-..+.. .. ..+..++++|. ...|..+.. +
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~ 310 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPG 310 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCC
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCC
Confidence 4788999885 35666666544 443331 2222222221 11 23567888763 333444321 3
Q ss_pred CcEEEEEcCC-CceEEEEee-ccc-----C--EEEEEEEeC-CCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEE
Q 005254 558 KTIKIWSISD-GSCLKTFEG-HTS-----S--VLRASFLTR-GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 627 (706)
Q Consensus 558 g~i~iwd~~~-~~~~~~~~~-~~~-----~--i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 627 (706)
+...+|...+ ++.-..+.. -.. . ...++++|. ...|+.++.++.|..-+ ..|+--..+..+--.+.++.
T Consensus 311 ~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~-D~G~tW~~~~~~lp~~~~v~ 389 (394)
T 3b7f_A 311 GKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASA-DEGEHWQCIASHLPHIYAVQ 389 (394)
T ss_dssp SSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEES-STTSBCEEEECSCSCEEEEE
T ss_pred CceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEEC-CCCCCceEcccCCCCeeEEE
Confidence 3345565444 233232221 110 0 134677764 34566666666555432 23443333333344566766
Q ss_pred E
Q 005254 628 V 628 (706)
Q Consensus 628 ~ 628 (706)
|
T Consensus 390 ~ 390 (394)
T 3b7f_A 390 S 390 (394)
T ss_dssp E
T ss_pred E
Confidence 5
No 376
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=67.86 E-value=79 Score=29.47 Aligned_cols=264 Identities=13% Similarity=0.087 Sum_probs=137.3
Q ss_pred ccCCCEEEEEeccCeEEEEECCC---------CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC-------
Q 005254 69 SPDDKLLFSSGHSREIRVWDLST---------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD------- 132 (706)
Q Consensus 69 s~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~------- 132 (706)
-|+..++++.+.+|.|+--.+.+ |..-..++ ....+..+........|+..+..|.++-+...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46778899999999998765532 12222333 23455555555566667767777877666542
Q ss_pred --CCeEEEE---eeCCCCcEEEEEEcCC-CCceEEEEEecCCeEEEEECCCCe-------eEEEeecccceEEEEEEecC
Q 005254 133 --GGFCTHY---FKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAKK-------CVATLDKHFSRVTSMAITSD 199 (706)
Q Consensus 133 --~~~~~~~---~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~ 199 (706)
.|..+.. +. ....|.++....+ .....++.++..|.++...+.... ....+.. .+.+..+....+
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 2332221 22 3455665554332 122358999999999998764322 2222332 345555555556
Q ss_pred CCEEEEEeCCCEEEEEeCCCCcce---------eeecCcceeeeEEeeCCCCC----c-----cccc-cc--ccchhhhc
Q 005254 200 GSTLISAGRDKVVNLWDLRDYSCK---------LTVPTYEMVEAVCAIPPGSA----F-----DSFL-SS--YNQQTIKK 258 (706)
Q Consensus 200 ~~~l~~~~~dg~i~~w~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~----~-----~~~~-~~--~~~~~~~~ 258 (706)
...++..+..|.+..++...-... ..+...+.+..+...++... . .... .. ........
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 667888889999888876432211 11222333444433331000 0 0000 00 00000000
Q ss_pred cccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeec
Q 005254 259 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 336 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 336 (706)
........+++.+..|..+...+..=....... .....+........+..+....++..+++.+..|.+.-......
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~-kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~i 317 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGT-QGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEI 317 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSCCBCTTS-CCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGGS
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhcccccCC-cceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhhC
Confidence 000123468888888988887765432211111 11122233333445555555667778888899998887766554
No 377
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=66.95 E-value=20 Score=35.92 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=43.9
Q ss_pred cEEEEEEccCCCEEEEEec------------cCeEEEEECCCCeEEEEeecc-CCCeEEEEECCCCCEEEEe
Q 005254 62 TITALALSPDDKLLFSSGH------------SREIRVWDLSTLKCLRSWKGH-DGPAIGMACHPSGGLLATA 120 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~------------d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~ 120 (706)
..-.|+|+|+|.+++.-.. .+.+.+.+..++++.+.+.++ ...++.++|+||++.|.+.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3478999999986665432 134666677788877777664 4689999999999988775
No 378
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=66.48 E-value=31 Score=34.21 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=44.8
Q ss_pred ccEEEEEEccCCCEEEEEec------------cCeEEEEECCCCeEEEEeecc-CCCeEEEEECCCCCEEEEe
Q 005254 61 DTITALALSPDDKLLFSSGH------------SREIRVWDLSTLKCLRSWKGH-DGPAIGMACHPSGGLLATA 120 (706)
Q Consensus 61 ~~i~~l~~s~~~~~l~s~~~------------d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~ 120 (706)
.....|+|+++|.+.+.... ...|..++..++++...+.+. ...++.++|+||+++|.+.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 35578999999987774321 226777788888877766643 4678999999999988876
No 379
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=65.66 E-value=80 Score=28.74 Aligned_cols=166 Identities=12% Similarity=0.116 Sum_probs=95.5
Q ss_pred ccceeEEEEccCCCeeEEEeeCCceEEEEeeecccccee---eEEeeEe-cccCceeeEeeEeCC--CCcEEEEEecCCc
Q 005254 304 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME---LILSKRL-VGYNEEILDLKFLGE--EEQYLAVATNIEQ 377 (706)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~v~~~~~~~~--~~~~l~~~~~~~~ 377 (706)
...+.........+.+++.+..|.++.+...+.|..... .+....+ ....+.+..+...++ ++.+++..+..|.
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 345566667778889999999999999888776644321 1100111 123345666554443 3567888999999
Q ss_pred EEEEeCCCcee--------eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc-------eEEEEEe-CCC
Q 005254 378 VQVYDLSSMSC--------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-------CCVGVGT-GHM 441 (706)
Q Consensus 378 i~~~d~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~-~~~ 441 (706)
+....+..... ...+... +.+..+. ....... ++..+.+|.+..+....- +-+..+. ...
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~--~~~~~~~-i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~ 193 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKND-DQVVDVH--LTDGMNE-LFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEG 193 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEE--EECSCSE-EEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTT
T ss_pred EEEeEHHHhhhccccCceEEEEeCCC-CEEEEEE--EeCCCCE-EEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCC
Confidence 99987753221 1123322 3444433 3334444 777788888877765321 1111111 123
Q ss_pred cCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
..|.++...+++...++..+..|..+..++..
T Consensus 194 d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 194 DYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 45666654443332577778888888877765
No 380
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=63.96 E-value=1e+02 Score=29.28 Aligned_cols=285 Identities=9% Similarity=0.055 Sum_probs=129.9
Q ss_pred EEEEecCCCeEEEEECCCCeEEeecc-CccccccccCCCccceeEEEEccCCCeeEEEeeCC-ceEEEEeeecccc----
Q 005254 266 HFITVGERGIVRMWNADSACLYEQKS-SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQ-QLLLYTTVEVPEK---- 339 (706)
Q Consensus 266 ~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~---- 339 (706)
+.+....+|.++.|-....-.+-... ........... ........+.......++.+.++ .++.|-.......
T Consensus 27 hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~-l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~ 105 (406)
T 4d9s_A 27 HSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA-LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGN 105 (406)
T ss_dssp EEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSS
T ss_pred eEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecc-cCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCC
Confidence 56677788999999754421100000 00000000000 01112223334445556566664 8888865433211
Q ss_pred ceeeEEeeEecc-cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCcee-----------eEeeeC-CcceEEEeeeee
Q 005254 340 KMELILSKRLVG-YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-----------SYVLAG-HSEIVLCLDTCA 406 (706)
Q Consensus 340 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~-----------~~~~~~-~~~~i~~~~~~~ 406 (706)
............ ....+..++. ...+.++.+.+|.|+.|-....-. ...+.. ....+..++
T Consensus 106 ~~~~~~p~~v~~l~~~~i~~ia~---G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va--- 179 (406)
T 4d9s_A 106 SSDLFTPLPIKALHGIRIKQIAC---GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVA--- 179 (406)
T ss_dssp CCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEE---
T ss_pred CCccccceEecccCCCCEEEEEE---ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEe---
Confidence 011111112221 1224555554 455666777889999997653211 111111 112344432
Q ss_pred ecCCCEEEEEeeCCCcEEEEeCCCc----------eEE-EEEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 407 LSSGKILIVTGSKDNSVRLWDSESR----------CCV-GVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~-~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
..... .+.-..+|.++.|-.... ... .... .....|..++.... ..+....+|.|+.|-....
T Consensus 180 -~G~~h-s~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~---ht~~l~~~G~v~~wG~n~~ 254 (406)
T 4d9s_A 180 -AGAEH-TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR---HTISVSYSGALYTYGWSKY 254 (406)
T ss_dssp -ECSSE-EEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS---EEEEEETTCCEEEEECCTT
T ss_pred -cCCCe-EEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCC---cEEEEcCCCCEEEeeCCCC
Confidence 12222 455567899999954321 111 1111 12245555555433 4556678899999976543
Q ss_pred CCCCCcccccceeE-EEe-ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc------------cEEEEEeecCCcEE
Q 005254 475 SDDAEQPMNLKAKA-VVA-AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL------------VSVVTFRGHKRGIW 540 (706)
Q Consensus 475 ~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------------~~~~~~~~~~~~v~ 540 (706)
.............. ... .....|..++.. ....++-..||.|+.|=.... .+..........|.
T Consensus 255 GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~ 332 (406)
T 4d9s_A 255 GQLGHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVV 332 (406)
T ss_dssp STTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEE
T ss_pred CCCCCCCCcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEE
Confidence 22111110100111 111 112235555443 334555567888888854321 11111111233566
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 541 SVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 541 ~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
.++... ...+....+|.|+.|=..
T Consensus 333 ~va~G~--~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 333 QVSCGW--RHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp EEEECS--SEEEEEETTSCEEEEECC
T ss_pred EEEeCC--CeEEEEeCCCCEEEecCC
Confidence 665543 334444578888888654
No 381
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=62.89 E-value=1.1e+02 Score=29.14 Aligned_cols=279 Identities=10% Similarity=0.036 Sum_probs=135.5
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce-----------eeEeeeC-CcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-----------CSYVLAG-HSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
.+..++. ...+.++...++.++.|-....- ....+.. ....+..++ ......++....++.
T Consensus 17 ~v~~ia~---G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va----~G~~ht~al~~~gg~ 89 (406)
T 4d9s_A 17 KVLIISA---GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVT----CGADHTVAYSQSGME 89 (406)
T ss_dssp CEEEEEE---CSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEE----ECSSEEEEEETTTTE
T ss_pred ceEEEec---CCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEE----eCcceEEEEECCCCE
Confidence 4444443 45566667778899988754311 1111111 112344442 122332333333458
Q ss_pred EEEEeCCCc---------eEEE--EEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeE-E
Q 005254 423 VRLWDSESR---------CCVG--VGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA-V 489 (706)
Q Consensus 423 i~i~d~~~~---------~~~~--~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~-~ 489 (706)
|+.|-.... .... .+. .....|..++.... ..+....+|.|+.|-.................. .
T Consensus 90 v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~---h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 166 (406)
T 4d9s_A 90 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS---HCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQK 166 (406)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS---EEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred EEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChh---heEEEcCCCcEEEeCCCCCccCCCCCCCCcccceE
Confidence 998853321 0111 111 12235666665443 566667889999997654322111111100111 1
Q ss_pred Ee-ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc----------cE-EEEEee-cCCcEEEEEEccCCCEEEEecC
Q 005254 490 VA-AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----------VS-VVTFRG-HKRGIWSVEFSPVDQVVITASG 556 (706)
Q Consensus 490 ~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----------~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~~ 556 (706)
.. .....|..++.. ....++-..+|.|+.|-.... .. ...+.. ....|..++... ...+....
T Consensus 167 v~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~--~ht~~l~~ 242 (406)
T 4d9s_A 167 IQAFEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW--RHTISVSY 242 (406)
T ss_dssp CGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS--SEEEEEET
T ss_pred ecccCCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC--CcEEEEcC
Confidence 11 112245555544 345556678899999964321 11 111111 124566666543 34444567
Q ss_pred CCcEEEEEcCCCce-----------EEEEee-cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC------------eE
Q 005254 557 DKTIKIWSISDGSC-----------LKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG------------EC 612 (706)
Q Consensus 557 dg~i~iwd~~~~~~-----------~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------------~~ 612 (706)
+|.|+.|-...... ...+.. ....|..++ ......+....||.|+.|=.... .+
T Consensus 243 ~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~--~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p 320 (406)
T 4d9s_A 243 SGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQIS--GGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSP 320 (406)
T ss_dssp TCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEE--ECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEE
T ss_pred CCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEE--ecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccC
Confidence 88999997533211 011111 112354443 34446666678999999964321 11
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 613 IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 613 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
..........|..++.. ..+.+....||.|..|--..
T Consensus 321 ~~v~~~~~~~v~~va~G--~~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 321 VQVRFPDDQKVVQVSCG--WRHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp EEECCGGGCCEEEEEEC--SSEEEEEETTSCEEEEECCT
T ss_pred EEEeccCCCcEEEEEeC--CCeEEEEeCCCCEEEecCCC
Confidence 11111223456666653 34555567899999997654
No 382
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=61.20 E-value=83 Score=27.41 Aligned_cols=141 Identities=11% Similarity=0.054 Sum_probs=75.9
Q ss_pred EEEEeeCCCcEEEEeCCCccE-EEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEc---CC----CceE---EEEee
Q 005254 508 LVCTGSQDRTACVWRLPDLVS-VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI---SD----GSCL---KTFEG 576 (706)
Q Consensus 508 ~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~---~~----~~~~---~~~~~ 576 (706)
.+++.+.+|.|+--....... ...++ ..+.+..+........|+..+..|.++-... .. |..+ ..+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lk-e~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYK-AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCC-TTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 455566677666544332110 00122 2233444433334445566667777555543 22 2211 1122
Q ss_pred cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC-------CeEEEEeccCCCcEEEEEEc-CCCCEEEEEeCCCcEEEEE
Q 005254 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-------GECIATYDKHEDKIWALAVG-KKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vw~ 648 (706)
....|.++....++.+|+.++..|.++...+.. |.....++. .+.+..+... .++..|+..+.+|.+..+.
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 234676664435667888999999999887742 333333332 2445444444 3455788888899988888
Q ss_pred CCc
Q 005254 649 DST 651 (706)
Q Consensus 649 ~~~ 651 (706)
++.
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 754
No 383
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=54.30 E-value=18 Score=37.00 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=42.2
Q ss_pred EeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCC-------------cEEEEEEcCCCCEEEEEe--CCCcEEEEECCc
Q 005254 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED-------------KIWALAVGKKTEMFATGG--SDALVNLWHDST 651 (706)
Q Consensus 587 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~v~~~~~s~~~~~l~~~~--~dg~i~vw~~~~ 651 (706)
..+..+|++.+.|.++|+|++.+++++....--.. +-.-+... +.++++=. ..|.+++|++..
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~--~~~lv~y~P~~~G~Fk~~~l~~ 305 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLY--NNTLVTLLPLENGLFQMGTLLV 305 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEES--SSEEEEEETTTTCEEEEEEEEC
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhhe--eeEEEEEecCCCCeEEEEEEEE
Confidence 34578999999999999999999999887753111 00111111 24555433 468999999865
Q ss_pred hh
Q 005254 652 AA 653 (706)
Q Consensus 652 ~~ 653 (706)
..
T Consensus 306 ~~ 307 (729)
T 3f7f_A 306 DS 307 (729)
T ss_dssp --
T ss_pred cC
Confidence 33
No 384
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=53.56 E-value=25 Score=35.93 Aligned_cols=37 Identities=14% Similarity=0.475 Sum_probs=30.7
Q ss_pred cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
.|.++.+ +..+|++-+.|.++++||+++++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665555 377999999999999999999999887664
No 385
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=42.87 E-value=2.7e+02 Score=27.79 Aligned_cols=111 Identities=13% Similarity=0.149 Sum_probs=68.0
Q ss_pred CCCCEEEEeeCCeEEEEEccCCeEEEeecCCCc---cEEEEEEccCCCEEEEEec--------------cCeEEEEECCC
Q 005254 29 SDGSFIACACGESINIVDLSNASIKSTIEGGSD---TITALALSPDDKLLFSSGH--------------SREIRVWDLST 91 (706)
Q Consensus 29 ~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~---~i~~l~~s~~~~~l~s~~~--------------d~~i~iwd~~~ 91 (706)
++|.++. +.+..+..+|. .++.+..+..... .-..+...|+|..|+.+.. +..|..-| .+
T Consensus 216 ~nG~l~~-g~G~~i~elD~-~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~t 292 (571)
T 3elq_A 216 PRGTFTA-VQGQHWYEFDM-MGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KS 292 (571)
T ss_dssp TTSCEEE-EEBTEEEEECT-TCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TT
T ss_pred CCCCEEE-ecCcEEEEECC-CCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CC
Confidence 5666554 44456888885 4555544332111 1133566889998886531 33566677 77
Q ss_pred CeEEEEeec--cC-------------------------------------------------CCeEEEEECC-CCCEEEE
Q 005254 92 LKCLRSWKG--HD-------------------------------------------------GPAIGMACHP-SGGLLAT 119 (706)
Q Consensus 92 ~~~~~~~~~--~~-------------------------------------------------~~v~~~~~s~-~~~~l~~ 119 (706)
|+.+..+.. |- --|+++.+.+ ++.+|++
T Consensus 293 GeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~dd~~liS 372 (571)
T 3elq_A 293 GRVVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDAKDDSIILS 372 (571)
T ss_dssp SCEEEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEETTTTEEEEE
T ss_pred CCEEEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcCCCCEEEEE
Confidence 877766531 00 1288999988 5568888
Q ss_pred ecCCCcEEEEECCCCeEEEEeeCCC
Q 005254 120 AGADRKVLVWDVDGGFCTHYFKGHK 144 (706)
Q Consensus 120 ~~~d~~i~vw~~~~~~~~~~~~~~~ 144 (706)
+-.- .|..-|. +++.+..+.++.
T Consensus 373 sR~~-~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 373 SRHQ-GVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp ETTT-EEEEEET-TSCEEEEESCST
T ss_pred CCcc-EEEEEcC-CCcEEEEECCCC
Confidence 7665 6666675 788888776654
No 386
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=36.84 E-value=1.3e+02 Score=29.39 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=46.9
Q ss_pred cEEEEEEcC----CCCceEEEEEecCCeEEEEECCCC-e-------eEEEeec--ccceEEEEEEecCCCEEEEEeCCCE
Q 005254 146 VVSSILFHP----DTDKSLLFSGSDDATVRVWDLLAK-K-------CVATLDK--HFSRVTSMAITSDGSTLISAGRDKV 211 (706)
Q Consensus 146 ~v~~~~~~~----~~~~~~l~~~~~dg~i~vwd~~~~-~-------~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~ 211 (706)
..+.|+... ++++.+++.|..+|.|.=.-+... . .+..+.. ...+|..|.++++..+|++++..+.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 457776643 367888999999998764433221 1 2223332 3568999999999999999998886
Q ss_pred EEE
Q 005254 212 VNL 214 (706)
Q Consensus 212 i~~ 214 (706)
+++
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 387
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=35.39 E-value=1e+02 Score=30.61 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=47.5
Q ss_pred cEEEEEEcCCCCceEEEEEecCCeEEEEECCCC----eeEEEee--cccceEE-EEEEecCCCEEEEEeCCCEEEE
Q 005254 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLD--KHFSRVT-SMAITSDGSTLISAGRDKVVNL 214 (706)
Q Consensus 146 ~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~--~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~ 214 (706)
..++++....+.+.+++.|..+|.|.-..+... .....+. ....+|. .|.++++..+|++++..+.+++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 467777776677888999999998876655322 1223332 2245775 8999999999999987765544
No 388
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=34.38 E-value=2.9e+02 Score=25.79 Aligned_cols=175 Identities=8% Similarity=0.023 Sum_probs=90.2
Q ss_pred CcEEEEeCCCc--eeeEeeeCC------cceEEEeeeeee-cC----CCEEEEEeeCCCcEEEEeCCCceEEEEEeC---
Q 005254 376 EQVQVYDLSSM--SCSYVLAGH------SEIVLCLDTCAL-SS----GKILIVTGSKDNSVRLWDSESRCCVGVGTG--- 439 (706)
Q Consensus 376 ~~i~~~d~~~~--~~~~~~~~~------~~~i~~~~~~~~-~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--- 439 (706)
..+.+||+.+. +.++.+.-. ...+..+.+-.. +. +....++=...+.|.++|+.+++..+....
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 46778888887 766655432 234555552211 21 233233334567899999999887765521
Q ss_pred -C--------------CcCeEEEEEecC----CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec--CcceE
Q 005254 440 -H--------------MGAVGAVAFSKK----LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH--GKDIN 498 (706)
Q Consensus 440 -~--------------~~~v~~~~~~~~----~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 498 (706)
. ...+..++++|+ ++.+.+...... ++|.+.+.-...... ......+-.. ...-.
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~T~~L~~~~~--~~~v~~~G~kg~~s~~~ 278 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVNTKELKQKGG--KLNPELLGNRGKYNDAI 278 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEEHHHHSSTTC--CCCCEEEEECCTTCCEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEEHHHhhCcch--hhceEEeeecCCCCCcc
Confidence 1 135677888886 443333333332 333332110000000 0111111111 13445
Q ss_pred EEEEc-CCCCEEEEeeCCCcEEEEeCCC-c---cEEEEEe-e-cCCcEEEEEEccCCCEEEEe
Q 005254 499 SLAVA-PNDSLVCTGSQDRTACVWRLPD-L---VSVVTFR-G-HKRGIWSVEFSPVDQVVITA 554 (706)
Q Consensus 499 ~~~~s-~~~~~l~~~~~dg~i~i~d~~~-~---~~~~~~~-~-~~~~v~~~~~s~~~~~l~~~ 554 (706)
.+++. .+|.++++--....|..|+..+ . +....+. . .-..+..+.+.+++.+.+..
T Consensus 279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 56775 6787777777888999999875 1 1222222 1 22235667776666554444
No 389
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=31.74 E-value=1.5e+02 Score=21.54 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=30.9
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEEC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL 89 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~ 89 (706)
.+.+..||+++++...+ +|...+... ..-..+.+..+|.+++.. .++...+|..
T Consensus 23 ~L~~q~dGnLvl~~~~~---vW~snt~~~--------~~~~~l~l~~dGNLVl~~-~~~~~~vW~S 76 (111)
T 3mez_A 23 AFVMQGDCNLVLYNEAG---GFQSNTHGR--------GVDCTLRLNNRGQLEIHS-ANSNTPVWVY 76 (111)
T ss_dssp EEEECTTSCEEEECSSC---CEECCCTTS--------CSSCEEEECTTSCEEEEC-SSCSSCSEEE
T ss_pred EEEEccCCeEEEECCCC---EEECCcccC--------CcCEEEEEcCCCcEEEEe-CCCCEEEEEe
Confidence 57788888888876544 787554321 111345667777766543 2333446643
No 390
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=31.73 E-value=1.5e+02 Score=21.60 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=33.5
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST 91 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~ 91 (706)
.+.+..||+++++.....-.+|...+... ..-..+.+..+|.+++.- .++.+ +|...+
T Consensus 27 ~L~~q~dGNLvL~~~~~~~~vWssnt~~~--------~~~~~l~l~~dGNLVl~d-~~~~~-iW~S~t 84 (113)
T 3mez_B 27 SLVMRDDCNLVLTKGSKTNIVWESGTSGR--------GQHCFMRLGHSGELDITD-DRLNT-VFVSNT 84 (113)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECCCTTS--------CSSCEEEECTTSCEEEEC-TTSCE-EEECSC
T ss_pred EEEEcCCCEEEEEECCCCEEEEECCcccC--------CcCEEEEEeCCCcEEEEC-CCCCE-EEECCC
Confidence 57778888887775433445777544311 111356777788776653 23443 676544
No 391
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=31.20 E-value=3.5e+02 Score=25.66 Aligned_cols=278 Identities=10% Similarity=0.039 Sum_probs=135.9
Q ss_pred cCCCeeEEEeeCCceEEEEeeeccccc-----eeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCcee
Q 005254 314 PSNQGLLCVTADQQLLLYTTVEVPEKK-----MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC 388 (706)
Q Consensus 314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~ 388 (706)
......++.+.+|.++.|-.....+.. ........+. ....+..++. ...+.++.+.+|.++.|-....-.
T Consensus 31 ~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~-~l~~v~~va~---G~~h~~~l~~~G~v~~wG~n~~Gq 106 (423)
T 3mvd_K 31 FHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVA-GIPDAVDISA---GGMHNLVLTKSGDIYSFGCNDEGA 106 (423)
T ss_dssp CCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECC-SCSSEEEEEE---CSSEEEEEETTSCEEEEECCSSST
T ss_pred cCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEcc-CCCCceEEee---CCCeEEEEeCCCeEEEeECCCCcC
Confidence 344445566778888888654422110 1111111221 2233555554 556777778889999997643110
Q ss_pred -------------eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeC--CC-ce---------EEEEEeCCCcC
Q 005254 389 -------------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS--ES-RC---------CVGVGTGHMGA 443 (706)
Q Consensus 389 -------------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~--~~-~~---------~~~~~~~~~~~ 443 (706)
...+. ....+..++ ..... .+.-..+|.|+.|-. .. ++ ...........
T Consensus 107 LG~~~~~~~~~~~P~~v~-~~~~i~~va----~G~~h-s~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~ 180 (423)
T 3mvd_K 107 LGRDTSEDGSESKPDLID-LPGKALCIS----AGDSH-SACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTV 180 (423)
T ss_dssp TCSCCCSTTSSSSCEECC-CSSCEEEEE----ECSSE-EEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCC
T ss_pred CCCCCcCCccccCCeEEc-CCCCEEEEE----cCcCe-EEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCc
Confidence 11111 122344443 12233 445577899999975 22 22 11111123345
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCc-------------ccccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ-------------PMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
|..++.... ..+....+|.|+.|-.......... .....+..........|..++.... ..++
T Consensus 181 i~~va~G~~---hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~-~~~~ 256 (423)
T 3mvd_K 181 CCSIASGAD---HLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY-CTFM 256 (423)
T ss_dssp EEEEEECSS---EEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETT-EEEE
T ss_pred EEEEecCCC---eEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCc-EEEE
Confidence 666665443 5666678899999975543211100 0011112222222334555554422 2233
Q ss_pred EeeCCCcEEEEeCCCc-----------cEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC---------c-
Q 005254 511 TGSQDRTACVWRLPDL-----------VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG---------S- 569 (706)
Q Consensus 511 ~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---------~- 569 (706)
.-..+|.|+.|-.... ............|..++... ...+.-..||.|+.|-.... .
T Consensus 257 ~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~--~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~ 334 (423)
T 3mvd_K 257 RESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ--HHTVILTTDLKCSVVGRPEYGRLGLGDVKDV 334 (423)
T ss_dssp EETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECS--SEEEEEETTCCEEEEECCGGGTTCSSSCCSC
T ss_pred EECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEccc--CeEEEEeCCCcEEEEECCCCCCCCCCCcccc
Confidence 3357888888853321 11111111234576666543 34445567899999965321 1
Q ss_pred --eEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 570 --CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 570 --~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
....+..-...|..++.. ...-+....||.|+.|=...
T Consensus 335 ~~~p~~v~~l~~~v~~ia~G--~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 335 VEKPTIVKKLTEKIVSVGCG--EVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEEEEECTTCCSCEEEEEEE--TTEEEEEETTSCEEEEECCT
T ss_pred ccCceEeccCCCCEEEEEcC--CCeEEEEcCCCCEEEECCCC
Confidence 111111122256555554 34555557899999996543
No 392
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A*
Probab=28.03 E-value=1.8e+02 Score=21.25 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=31.4
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST 91 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~ 91 (706)
.+.|..||+++.+. ..-.+|...+... + .-..+.+..+|.+++.- .++. .+|...+
T Consensus 23 ~L~~~~dgnlvly~--~~~~vW~sn~~~~-----~---~~~~l~l~~~GnLvl~d-~~~~-~vW~S~~ 78 (115)
T 2dpf_A 23 TLTIQNKCNLVKYQ--NGRQIWASNTDRR-----G---SGCRLTLLSDGNLVIYD-HNNN-DVWGSAC 78 (115)
T ss_dssp EEEECTTSCEEEEE--TTEEEEECSCTTS-----C---SSCEEEECTTSCEEEEC-TTCC-EEEECCC
T ss_pred EEEEcCCCcEEEEe--CCEEEEeCCCCCC-----C---CceEEEECCCCcEEEEC-CCce-EEEEcCC
Confidence 57777888877764 3446677554321 1 11346677778766653 2333 4676443
No 393
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=26.69 E-value=2.2e+02 Score=29.07 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=44.9
Q ss_pred cEEEEEE----cCCCCceEEEEEecCCeEE-EEECCCCe-------eEEEee--cccceEEEEEEecCCCEEEEEeCCCE
Q 005254 146 VVSSILF----HPDTDKSLLFSGSDDATVR-VWDLLAKK-------CVATLD--KHFSRVTSMAITSDGSTLISAGRDKV 211 (706)
Q Consensus 146 ~v~~~~~----~~~~~~~~l~~~~~dg~i~-vwd~~~~~-------~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~ 211 (706)
..+.|+. .+++++.+++.|+.+|.|. +....... .+..+. ....+|..|.++++...|++++.++.
T Consensus 413 ~lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V 492 (667)
T 4gz8_A 413 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 492 (667)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEE
Confidence 3455554 3556678899999999885 22221111 222222 34567899999999999999998876
Q ss_pred EEE
Q 005254 212 VNL 214 (706)
Q Consensus 212 i~~ 214 (706)
+++
T Consensus 493 ~kV 495 (667)
T 4gz8_A 493 AQL 495 (667)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 394
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=24.07 E-value=2.9e+02 Score=27.03 Aligned_cols=76 Identities=8% Similarity=0.028 Sum_probs=41.6
Q ss_pred CeEEEEEecC----C-CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe--ecCcceEEEEEcCCCCEEEEeeCC
Q 005254 443 AVGAVAFSKK----L-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLAVAPNDSLVCTGSQD 515 (706)
Q Consensus 443 ~v~~~~~~~~----~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d 515 (706)
..++|+...- + ...++.|..+|.|.-.-+...... ..........+. ....+|..|.++++..+|.+++.+
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~--~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~ 482 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETW--HDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTA 482 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-------------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSS
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCc--cccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECC
Confidence 4555555431 2 236778888888765544322100 000000111111 235788999999999999999887
Q ss_pred CcEEE
Q 005254 516 RTACV 520 (706)
Q Consensus 516 g~i~i 520 (706)
+.++|
T Consensus 483 ~V~~v 487 (495)
T 1q47_A 483 GVAQL 487 (495)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 75554
No 395
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=23.13 E-value=6.4e+02 Score=26.10 Aligned_cols=193 Identities=7% Similarity=0.002 Sum_probs=101.8
Q ss_pred ceEEcCCCCEEEEeeC----C--eEEEEEccCCeEEE-eecC-CCc------cEEEEEEccCCCEEEEE----------e
Q 005254 24 PLVVSSDGSFIACACG----E--SINIVDLSNASIKS-TIEG-GSD------TITALALSPDDKLLFSS----------G 79 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~----~--~i~i~d~~~~~~~~-~l~~-~~~------~i~~l~~s~~~~~l~s~----------~ 79 (706)
.-+++||+++++++-. + .++++|+.+++.+. .+.. -.. ....++|..+..++++. +
T Consensus 134 ~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~ 213 (711)
T 4hvt_A 134 VSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSL 213 (711)
T ss_dssp EEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTS
T ss_pred eeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCC
Confidence 3459999999988743 2 69999999998763 2220 000 11334676444444432 1
Q ss_pred ccCeEEEEECCCCe--EEEEeeccCCC-eEEEEECCCCCE-----EEEec---CCCcEEEEECCC--CeEEEEeeCCCCc
Q 005254 80 HSREIRVWDLSTLK--CLRSWKGHDGP-AIGMACHPSGGL-----LATAG---ADRKVLVWDVDG--GFCTHYFKGHKGV 146 (706)
Q Consensus 80 ~d~~i~iwd~~~~~--~~~~~~~~~~~-v~~~~~s~~~~~-----l~~~~---~d~~i~vw~~~~--~~~~~~~~~~~~~ 146 (706)
....|+.|.+-+.. -...+.+.... -.....++++++ +++.+ ....+.+.+.+. ++...........
T Consensus 214 ~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (711)
T 4hvt_A 214 YPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDAT 293 (711)
T ss_dssp SBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTCE
T ss_pred CCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcce
Confidence 23568888776542 22234433333 334566777763 33333 224566667653 4423222222222
Q ss_pred EEEEEEcCCCCceEEEE---------EecCCeEEEEECCCCe-------eEEE-e-ecccceEEEEEEecCCCEEEEEeC
Q 005254 147 VSSILFHPDTDKSLLFS---------GSDDATVRVWDLLAKK-------CVAT-L-DKHFSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 147 v~~~~~~~~~~~~~l~~---------~~~dg~i~vwd~~~~~-------~~~~-~-~~~~~~v~~~~~~~~~~~l~~~~~ 208 (706)
+..+.++ ..++.+ ....+.|...++.++. .... + ......+..+.+..+ .++++...
T Consensus 294 ---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~ 368 (711)
T 4hvt_A 294 ---LQGSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYD 368 (711)
T ss_dssp ---EEEEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEE
T ss_pred ---EeeeECC-EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEE
Confidence 2233333 322222 1256789999987642 2222 3 233456778888866 56677766
Q ss_pred CC--EEEEEeCCCCc
Q 005254 209 DK--VVNLWDLRDYS 221 (706)
Q Consensus 209 dg--~i~~w~~~~~~ 221 (706)
++ .+.++++.++.
T Consensus 369 ~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 369 NVVAKVVTFTLENEQ 383 (711)
T ss_dssp TTEEEEEEECEETTE
T ss_pred CCEEEEEEEECCCCc
Confidence 76 46667765553
No 396
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=21.70 E-value=3.9e+02 Score=23.11 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=49.5
Q ss_pred ccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeC
Q 005254 304 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383 (706)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~ 383 (706)
...+..+....++..++.++.+|.+....+.+.......-.....+. ..+.+..+...+.++..++..+.+|.+..++.
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~-~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~ 161 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-ENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 161 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCC-TTCCBCCCEECCCTTCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEEC-CCCEEEEEEEecCCCCEEEEEcCCCeEEEEEH
Confidence 44566665545667789999999999998876543222111222222 23455555555334557778888888888776
Q ss_pred CC
Q 005254 384 SS 385 (706)
Q Consensus 384 ~~ 385 (706)
..
T Consensus 162 ~e 163 (256)
T 1zvt_A 162 SD 163 (256)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 397
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=21.62 E-value=2.4e+02 Score=20.50 Aligned_cols=24 Identities=13% Similarity=-0.013 Sum_probs=11.5
Q ss_pred EEEEcCCCCceEEEEEecCCeEEEEECC
Q 005254 149 SILFHPDTDKSLLFSGSDDATVRVWDLL 176 (706)
Q Consensus 149 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 176 (706)
.+.+..+|. |+.-..++.+ +|...
T Consensus 60 ~l~l~~dGN---LVl~d~~~~~-iW~S~ 83 (113)
T 3mez_B 60 FMRLGHSGE---LDITDDRLNT-VFVSN 83 (113)
T ss_dssp EEEECTTSC---EEEECTTSCE-EEECS
T ss_pred EEEEeCCCc---EEEECCCCCE-EEECC
Confidence 455666555 3333334433 66543
No 398
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=21.35 E-value=2.2e+02 Score=29.09 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=36.3
Q ss_pred eEEEEecCCCeEEEEEe-cCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEE
Q 005254 455 NFLVSGSSDHTIKVWSF-DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520 (706)
Q Consensus 455 ~~l~~~~~d~~i~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 520 (706)
..++.|..+|.|.-.-+ ............. ..........+|..|.++++...|.+++.++.+++
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~l-eEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLL-EEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEE-EEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEE-EEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 36778888888753322 2211000000000 01112235677899999999999999998775554
No 399
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=20.71 E-value=5.2e+02 Score=25.68 Aligned_cols=79 Identities=13% Similarity=0.217 Sum_probs=51.1
Q ss_pred eeeeeeeccceEEcCCCCEEEEeeCC--------eEEEEEccCCeEEEeecCCC-----ccEEEEEE-ccC--C--CEEE
Q 005254 15 VLQQFYGGGPLVVSSDGSFIACACGE--------SINIVDLSNASIKSTIEGGS-----DTITALAL-SPD--D--KLLF 76 (706)
Q Consensus 15 ~~~~~~~~~~~~~s~dg~~l~~~~~~--------~i~i~d~~~~~~~~~l~~~~-----~~i~~l~~-s~~--~--~~l~ 76 (706)
.+...++...|+--++++++++-..+ .|+|.|+.+|..+..+.... ..+..++. ..| | .++.
T Consensus 190 ~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~Y 269 (570)
T 3hx6_A 190 DLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAY 269 (570)
T ss_dssp TCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEE
T ss_pred ccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCCCCccCCccccceEEecCCCCceeEEE
Confidence 34444444456666688886655543 69999999999887765221 23333332 233 3 5788
Q ss_pred EEeccCeEEEEECCCCe
Q 005254 77 SSGHSREIRVWDLSTLK 93 (706)
Q Consensus 77 s~~~d~~i~iwd~~~~~ 93 (706)
.+...|.|.-+|+.+..
T Consensus 270 aGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 270 AGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp EEETTSEEEEEECSCSS
T ss_pred EEeCCCcEEEEEcCCCC
Confidence 88889999888887644
No 400
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=20.08 E-value=2.5e+02 Score=20.20 Aligned_cols=75 Identities=12% Similarity=0.221 Sum_probs=39.8
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG 103 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 103 (706)
.+.|..||+++++- ..-.+|...+... ..-..+.+..+|++++.. .++. .+|...+. ...
T Consensus 23 ~l~~~~dGnlvl~~--~~~~vW~sn~~~~--------~~~~~l~l~~dGNLVl~~-~~~~-~~W~S~t~--------~~~ 82 (110)
T 3a0c_A 23 RLIMQGDCNFVLYD--SGKPVWASNTGGL--------GSGCRLTLHNNGNLVIYD-QSNR-VIWQTKTN--------GKE 82 (110)
T ss_dssp EEEECTTSCEEEEE--TTEEEEECCCTTS--------CSSCEEEECTTSCEEEEC-TTCC-EEEECCCC--------CSS
T ss_pred EEEEcCCCcEEEEE--CCEEEEECCCCCC--------CCcEEEEEeCCCCEEEEC-CCCc-EEEecCCC--------CCC
Confidence 56777788877764 2345676544311 111346677778766653 2333 46764321 112
Q ss_pred CeEEEEECCCCCEEE
Q 005254 104 PAIGMACHPSGGLLA 118 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~ 118 (706)
.-..+.+.++|.+++
T Consensus 83 g~~~l~l~~dGnlvl 97 (110)
T 3a0c_A 83 DHYVLVLQQDRNVVI 97 (110)
T ss_dssp SCCEEEECTTSCEEE
T ss_pred CCEEEEEeCCccEEE
Confidence 233566667776544
Done!