BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005256
         (705 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P25391|LAMA1_HUMAN Laminin subunit alpha-1 OS=Homo sapiens GN=LAMA1 PE=1 SV=2
          Length = 3075

 Score = 35.4 bits (80), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 347 IIQPVEIHSFAADCNTDDLLCVQIRNVSPAHAPDIVLYIDAITIVFEEASKGGPSSPLPI 406
           I QP E H  AA+CN   +      N +  H          +   + E S+G P    P 
Sbjct: 738 ICQPCECHGHAAECNVHGVCIACAHNTTGVHCE------QCLPGFYGEPSRGTPGDCQPC 791

Query: 407 AC-IEAGNDHNLPNLALRRGEE 427
           AC +   +++  P   L  G+E
Sbjct: 792 ACPLTIASNNFSPTCHLNDGDE 813


>sp|Q6ASC7|EFG1_DESPS Elongation factor G 1 OS=Desulfotalea psychrophila (strain LSv54 /
           DSM 12343) GN=fusA1 PE=3 SV=1
          Length = 695

 Score = 32.7 bits (73), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 22/149 (14%)

Query: 25  AGEGQSSHDVQVIHQNGEYLSEEKIDLRKDISVSESLLRMED----HKRQTETLLHRFKN 80
           +G G+   +V V     EY +E ++  +  +S  E++ +  +    HK+QT         
Sbjct: 450 SGMGELHLEVYVERMKREYAAEVEVG-KPQVSYRETITQRAEFNYTHKKQT-------GG 501

Query: 81  SHFFVRIAESGEPLWSKKSD----------PEMSLESAEAESQKSIASGKKTAKNMSGVA 130
           +  F R+A   EPL     +          P   + S +   QKS+  G      ++GV 
Sbjct: 502 TGQFGRVAGYMEPLDEGDYEFVDKIVGGAIPREFISSCDKGFQKSLVKGHLCGAGITGVR 561

Query: 131 AVIDKGDFDANLSGGVARNIVKCCSLSNG 159
            VI+ G F A  S  VA  I    +  +G
Sbjct: 562 CVINDGSFHAVDSSDVAFQIASVGAFKDG 590


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.129    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,127,329
Number of Sequences: 539616
Number of extensions: 10992490
Number of successful extensions: 30547
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 30431
Number of HSP's gapped (non-prelim): 182
length of query: 705
length of database: 191,569,459
effective HSP length: 125
effective length of query: 580
effective length of database: 124,117,459
effective search space: 71988126220
effective search space used: 71988126220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)