Query 005256
Match_columns 705
No_of_seqs 18 out of 20
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 20:05:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a0i_A DNA ligase; DNA replica 20.1 31 0.001 34.4 1.0 31 304-349 210-242 (348)
2 3d24_B Peroxisome proliferator 19.0 32 0.0011 24.6 0.7 12 206-217 8-19 (26)
3 1q8m_A Triggering receptor exp 14.2 1.9E+02 0.0064 25.1 4.4 56 490-550 38-99 (127)
4 1wgv_A KIAA1068 protein; CS do 12.8 1.9E+02 0.0063 24.9 4.0 15 629-643 10-27 (124)
5 1v1c_A Obscurin; muscle, sarco 12.3 1.2E+02 0.004 25.7 2.5 16 154-169 24-39 (71)
6 4ew7_A Conjugative transfer: r 12.1 1.6E+02 0.0054 27.2 3.4 37 131-171 89-125 (127)
7 2ojl_A Hypothetical protein; B 11.9 71 0.0024 28.6 1.1 35 61-100 22-68 (108)
8 1pk8_A RAT synapsin I; ATP bin 10.6 49 0.0017 35.1 -0.4 31 290-320 124-154 (422)
9 1xed_A Polymeric-immunoglobuli 10.6 3.1E+02 0.011 22.4 4.5 51 490-547 35-90 (117)
10 2dlg_A Filamin-B; beta-sandwic 10.6 2.1E+02 0.0071 24.3 3.5 22 532-553 21-42 (102)
No 1
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=20.15 E-value=31 Score=34.38 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=20.9
Q ss_pred ccccCCccceeeeeeeccccceeEEeccceeeeCCcc--cceeeeeee
Q 005256 304 GQRTGNEGLLSFRGVSLERERFSVRCGLEGIYVPGRR--WRRKLEIIQ 349 (705)
Q Consensus 304 s~k~g~e~lLSFRGVsLE~eRFSV~CGLEGiyiPGrR--WrRKleIIQ 349 (705)
..+.|.||+..=+ +.+.|.|||| |. |+.-.+
T Consensus 210 ~~~~g~EGlv~K~--------------~ds~Y~~Grr~~wl-K~K~~~ 242 (348)
T 1a0i_A 210 KRAEGHEGLIVKD--------------PMCIYKRGKKSGWW-KMKPEN 242 (348)
T ss_dssp HHTTTCCCEEEEC--------------TTCEECSEEEEEEE-EESCCE
T ss_pred HHHcCCceEEEeC--------------CCCCCCCCCccCcE-EEeecc
Confidence 4567788876543 3679999987 55 665444
No 2
>3d24_B Peroxisome proliferator-activated receptor gamma coactivator 1-alpha; nuclear receptor, ligand binding domain, DNA- binding, metal-binding, nucleus; 2.11A {Homo sapiens}
Probab=19.04 E-value=32 Score=24.61 Aligned_cols=12 Identities=58% Similarity=1.135 Sum_probs=10.4
Q ss_pred CchHHHhhcccc
Q 005256 206 DPCGELLKWLLP 217 (705)
Q Consensus 206 DPc~eLLkWLLP 217 (705)
-||-||||.|--
T Consensus 8 RpCtELlKyLTs 19 (26)
T 3d24_B 8 RPCSELLKYLTT 19 (26)
T ss_pred CcHHHHHHHHhc
Confidence 699999999854
No 3
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like domain, immunoglobulin-like, immune system receptor; HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Probab=14.20 E-value=1.9e+02 Score=25.07 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=30.5
Q ss_pred eeeecCCCCcccCCCcceeEEeeccccCC-CCCccccccC-----CceEEEEecCCCcccceeEEee
Q 005256 490 RLFFKQPTSWRPRISRDLMISVASEISGQ-SSEANERVTQ-----LPVLTLQASNLTSQDLTLTVLA 550 (705)
Q Consensus 490 rLFFKQpTsWRPr~srDLmISVaSEmS~q-~~g~~~r~~Q-----LPvLTLqAsNLTsedLtLTVLA 550 (705)
..||||...-.|+ ++|..... ++. ....++|.+- =-.++|+-+||+.||--.--=|
T Consensus 38 ~~WyrQ~pg~~~~----~li~~~~~-~~~~~~~~~gRfsis~~~s~~~~~LtIs~lq~eDsa~Y~Ca 99 (127)
T 1q8m_A 38 KAWQIIRDGEMPK----TLACTERP-SKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCV 99 (127)
T ss_dssp EEEEEEETTTEEE----EEEECCSS-CCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEeCCCCCCE----EEEEEcCC-CceeccccCCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEE
Confidence 5788887544444 45542210 111 1112345432 1338999999999997655444
No 4
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=12.81 E-value=1.9e+02 Score=24.92 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=11.2
Q ss_pred ccCCCCccc---eeeecc
Q 005256 629 VPSSGLGCT---HLWLQS 643 (705)
Q Consensus 629 ip~sglgCT---HLWLQS 643 (705)
-|+.|-||+ |.|-|+
T Consensus 10 ~~~~~nG~~~~~y~W~Qt 27 (124)
T 1wgv_A 10 NPDSYNGAVRENYTWSQD 27 (124)
T ss_dssp CSSSSSSBCCSSCEEEEE
T ss_pred CCCccCCCcCCcEEEEEc
Confidence 356777886 789995
No 5
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=12.27 E-value=1.2e+02 Score=25.70 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=14.1
Q ss_pred eeccCCCEEEEEEEEe
Q 005256 154 CSLSNGDIVVLLQVNV 169 (705)
Q Consensus 154 caL~NGDIVVlLQVnV 169 (705)
-+|.+||+|-+||.|-
T Consensus 24 i~lk~Gd~VeVl~k~~ 39 (71)
T 1v1c_A 24 ITLREGQYVEVLDAAH 39 (71)
T ss_dssp CCBCTTCEEEEEEEEE
T ss_pred eeecCCCEEEEEEcCC
Confidence 4699999999999885
No 6
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=12.12 E-value=1.6e+02 Score=27.18 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=26.7
Q ss_pred EEeecCCCCccccccccccceeeeeccCCCEEEEEEEEeec
Q 005256 131 AVIDKGDFDANLSGGVARNIVKCCSLSNGDIVVLLQVNVGV 171 (705)
Q Consensus 131 aviDrg~FD~~~sGGvARn~v~ccaL~NGDIVVlLQVnVgV 171 (705)
|+..|=||- |-+-.=-+.|-++-|.|+||+-|.|+-.
T Consensus 89 af~r~Fn~~----~e~yQIRmE~iSf~~~e~~~lWQiNlf~ 125 (127)
T 4ew7_A 89 AFCRRFNFH----GEIYQIRMENISFDNNEIIVLWQINLFP 125 (127)
T ss_dssp EEEEEEEET----TEEEEEEEEEEECTTCCEEEEEEEEECC
T ss_pred eEEEEeecC----CceEEEEEEEeeecCCceEEEEEeeeec
Confidence 555555553 2233445789999999999999999843
No 7
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=11.86 E-value=71 Score=28.58 Aligned_cols=35 Identities=34% Similarity=0.638 Sum_probs=25.4
Q ss_pred hhhhhhhhHhHHHHHHHhc------------cCceEEEEcccCCCcccCCCC
Q 005256 61 LLRMEDHKRQTETLLHRFK------------NSHFFVRIAESGEPLWSKKSD 100 (705)
Q Consensus 61 lLrmEdhKrqte~lLqrF~------------~ShFFVrIaes~ePLWSkk~~ 100 (705)
+||-.|..+ .||+.|. +--|-|++ .|+.+||||..
T Consensus 22 ~lRa~~laq---eLl~tF~~~l~eV~L~P~~~G~FeV~v--ng~lVwsRk~~ 68 (108)
T 2ojl_A 22 LLRAAWMAQ---ELLSTFGADLGEVALVPGTGGVFRIHY--NGAPLWDREVD 68 (108)
T ss_dssp HHHHHHHHH---HHHHHHGGGSSEEEEEEECTTCEEEEE--TTEEEEEHHHH
T ss_pred hHHHHHHHH---HHHHhcCcccceEEEEeCCCceEEEEE--CCEEEEEEccC
Confidence 566666554 5788994 35688888 58999999853
No 8
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=10.64 E-value=49 Score=35.14 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=15.5
Q ss_pred cchhhchhhhhhhcccccCCccceeeeeeec
Q 005256 290 LEDWDQYTSQKLFKGQRTGNEGLLSFRGVSL 320 (705)
Q Consensus 290 ~edWd~~s~qk~~ks~k~g~e~lLSFRGVsL 320 (705)
.-||.+|...|-+.++-....++=.|++..|
T Consensus 124 ~~dw~K~f~~~~~~g~y~i~veqa~~~~i~l 154 (422)
T 1pk8_A 124 HTDWAKYFKGKKIHGEIDIKVEQAEFSDLNL 154 (422)
T ss_dssp TSCHHHHHTTCEETTTEEEEEEEECGGGEEE
T ss_pred cchHHHHhcccccccchhhHHHHHhhcCceE
Confidence 3478888777633222212244445555444
No 9
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=10.61 E-value=3.1e+02 Score=22.35 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=24.8
Q ss_pred eeeecCCCCcccCCCcceeEEeeccccCCCCCcccccc-----CCceEEEEecCCCcccceeE
Q 005256 490 RLFFKQPTSWRPRISRDLMISVASEISGQSSEANERVT-----QLPVLTLQASNLTSQDLTLT 547 (705)
Q Consensus 490 rLFFKQpTsWRPr~srDLmISVaSEmS~q~~g~~~r~~-----QLPvLTLqAsNLTsedLtLT 547 (705)
-.||||...-.| .+||...... .....+|.. .--..+|+-+|++.+|=-+-
T Consensus 35 v~Wyrq~~~~~~----~~li~~~~~~---~~~~~~R~~~~~~~~~~~~sL~I~~l~~~DsG~Y 90 (117)
T 1xed_A 35 KYWCRQGARGGC----ITLISSEGYV---SSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRY 90 (117)
T ss_dssp EEEEEC-----C----EEEEESSSCB---CTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred EEEEEeCCCCCC----EEEEEeCCeE---cceEcCCEEEEecCCCCEEEEEECCCChHHCEEE
Confidence 456777643223 3455544321 122234432 11237888899998885443
No 10
>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=10.57 E-value=2.1e+02 Score=24.34 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.4
Q ss_pred EEEEecCCCcccceeEEeecCC
Q 005256 532 LTLQASNLTSQDLTLTVLAPTS 553 (705)
Q Consensus 532 LTLqAsNLTsedLtLTVLAPas 553 (705)
+||.+.+-...+|+.+|..|.-
T Consensus 21 ftv~~~~ag~~~l~v~v~~P~G 42 (102)
T 2dlg_A 21 LNLKIPEINSSDMSAHVTSPSG 42 (102)
T ss_dssp CEEECTTSCGGGCEEEEECTTS
T ss_pred EEEEecCCCCCCEEEEEECCCC
Confidence 9999999999999999998875
Done!