Query 005256
Match_columns 705
No_of_seqs 18 out of 20
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 20:05:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005256.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005256hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a0ia2 d.142.2.1 (A:2-240) AT 32.3 5.8 0.00042 34.0 0.7 14 331-345 223-238 (239)
2 d1mqkh_ b.1.1.1 (H:) Immunoglo 26.3 33 0.0024 29.0 4.6 39 532-570 79-123 (123)
3 d2bnqd1 b.1.1.1 (D:2-114) T-ce 25.2 35 0.0026 26.3 4.3 61 482-546 20-86 (113)
4 d1jfla2 c.78.2.1 (A:116-228) A 24.3 4.5 0.00032 31.7 -1.4 8 634-641 77-84 (113)
5 d2bmwa1 b.43.4.2 (A:9-141) Fer 24.2 9.6 0.0007 31.2 0.7 12 259-270 67-78 (133)
6 d1i9ea_ b.1.1.1 (A:) T-cell an 19.3 27 0.002 27.1 2.4 55 491-549 33-90 (115)
7 d1smoa_ b.1.1.1 (A:) TREM-1 (t 19.2 60 0.0044 24.7 4.4 65 480-548 17-92 (113)
8 d1i8lc_ b.1.1.1 (C:) Immunorec 17.2 1.2E+02 0.0088 23.2 5.9 19 532-550 75-93 (118)
9 d1b74a2 c.78.2.1 (A:106-252) G 15.8 13 0.00095 31.5 -0.4 10 633-642 70-80 (147)
10 d2gj6d1 b.1.1.1 (D:15-114) T-c 15.2 41 0.003 25.2 2.5 52 492-547 20-72 (94)
No 1
>d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]}
Probab=32.29 E-value=5.8 Score=33.99 Aligned_cols=14 Identities=36% Similarity=0.798 Sum_probs=10.1
Q ss_pred cceeeeCCcc--cceee
Q 005256 331 LEGIYVPGRR--WRRKL 345 (705)
Q Consensus 331 LEGiyiPGrR--WrRKl 345 (705)
+.+.|.|||| |. |+
T Consensus 223 ~~s~Y~~GR~~~w~-K~ 238 (239)
T d1a0ia2 223 PMCIYKRGKKSGWW-KM 238 (239)
T ss_dssp TTCEECSEEEEEEE-EE
T ss_pred CCCccCCCCCCCcE-Ee
Confidence 3567999997 75 54
No 2
>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}
Probab=26.26 E-value=33 Score=29.02 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=29.5
Q ss_pred EEEEecCCCcccceeEEeecCCCC------CCCceEeccCCCCCC
Q 005256 532 LTLQASNLTSQDLTLTVLAPTSFT------YPPSVVSLNSSPTSP 570 (705)
Q Consensus 532 LTLqAsNLTsedLtLTVLAPasft------sppSVvsLnSaPttP 570 (705)
+.||-+||++||--+---|-.... ++=..|+.+||+++|
T Consensus 79 ~~L~i~~L~~eDtAvYYCAr~~~~~~~d~WG~GT~VTVsSa~~~p 123 (123)
T d1mqkh_ 79 LYLQMSSLKSEDTAMYYCVRHEYYYAMDYWGQGTTVTVSSAWRHP 123 (123)
T ss_dssp EEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCCC
T ss_pred cccceeeeccCcccceeEEecCCCccccccCCCEEEEEeCCCCCC
Confidence 789999999999877655533221 445679999999998
No 3
>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}
Probab=25.21 E-value=35 Score=26.27 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=33.0
Q ss_pred eeecccccee----eecCCCCcccCCCcceeEEeeccccCCCCCcc--ccccCCceEEEEecCCCccccee
Q 005256 482 CRCNYTESRL----FFKQPTSWRPRISRDLMISVASEISGQSSEAN--ERVTQLPVLTLQASNLTSQDLTL 546 (705)
Q Consensus 482 crCnyTeSrL----FFKQpTsWRPr~srDLmISVaSEmS~q~~g~~--~r~~QLPvLTLqAsNLTsedLtL 546 (705)
-.|+|+.+-. +|||. |.-+.+++|.+.+.......+.. .....-...+|+-.||+.+|--+
T Consensus 20 L~C~~s~~~~~~~~Wyrq~----~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~ 86 (113)
T d2bnqd1 20 LNCSFTDSAIYNLQWFRQD----PGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSAT 86 (113)
T ss_dssp EEEEESCCCEEEEEEEEEC----TTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred EEEEEecCcccCCeEEEec----cccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcE
Confidence 3455544332 47764 77778899988764322111111 01111223778888888888543
No 4
>d1jfla2 c.78.2.1 (A:116-228) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=24.27 E-value=4.5 Score=31.66 Aligned_cols=8 Identities=38% Similarity=0.837 Sum_probs=6.7
Q ss_pred Cccceeee
Q 005256 634 LGCTHLWL 641 (705)
Q Consensus 634 lgCTHLWL 641 (705)
||||||.|
T Consensus 77 LGCTelpl 84 (113)
T d1jfla2 77 AGCTEVSV 84 (113)
T ss_dssp ECSHHHHH
T ss_pred EccccHHH
Confidence 69999965
No 5
>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}
Probab=24.20 E-value=9.6 Score=31.22 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=10.2
Q ss_pred ccccccCCCCCC
Q 005256 259 HFRSYSMSSLPQ 270 (705)
Q Consensus 259 hFRSYSMsslP~ 270 (705)
+.|+|||+|.|.
T Consensus 67 ~~R~YSias~p~ 78 (133)
T d2bmwa1 67 KLRLYSIASTRH 78 (133)
T ss_dssp CCEEEEBCSCTT
T ss_pred ceeeeeecCCCc
Confidence 479999999865
No 6
>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}
Probab=19.30 E-value=27 Score=27.06 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=28.2
Q ss_pred eeecCCCCcccCCCcceeEEeeccccCCCCCccccccCCce---EEEEecCCCcccceeEEe
Q 005256 491 LFFKQPTSWRPRISRDLMISVASEISGQSSEANERVTQLPV---LTLQASNLTSQDLTLTVL 549 (705)
Q Consensus 491 LFFKQpTsWRPr~srDLmISVaSEmS~q~~g~~~r~~QLPv---LTLqAsNLTsedLtLTVL 549 (705)
++|+| +|.-+--+|+...+...........+..-.+. .+|.-+||+.||=-+--=
T Consensus 33 ~Wyrq----~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyC 90 (115)
T d1i9ea_ 33 FWYVQ----YPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFC 90 (115)
T ss_dssp EEEEE----CTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEEEE
T ss_pred EEEEE----CCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccceecc
Confidence 56665 46666678887654432222222222221111 567777887777544433
No 7
>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.17 E-value=60 Score=24.72 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=33.1
Q ss_pred EEeeecccc-----c-eeeecCCCCcccCCCcceeEEeeccccCCCCCccccc-----cCCceEEEEecCCCcccceeEE
Q 005256 480 LSCRCNYTE-----S-RLFFKQPTSWRPRISRDLMISVASEISGQSSEANERV-----TQLPVLTLQASNLTSQDLTLTV 548 (705)
Q Consensus 480 VscrCnyTe-----S-rLFFKQpTsWRPr~srDLmISVaSEmS~q~~g~~~r~-----~QLPvLTLqAsNLTsedLtLTV 548 (705)
|.-.|.|.. . ..+|||+. .....+++.....-........+|. .+--.++|+-+||+.+|=-+--
T Consensus 17 vtl~C~~~~~~~~~~~~~Wyrq~~----~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~ 92 (113)
T d1smoa_ 17 LDVKCDYTLEKFASSQKAWQIIRD----GEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQ 92 (113)
T ss_dssp EEEEEECCHHHHTTSCEEEEEECT----TSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred EEEEEEeCCCCCCCCEEEEEECCC----CCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccCceEE
Confidence 445666642 2 34788754 3334466554432111111222332 2222378889999999965543
No 8
>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.21 E-value=1.2e+02 Score=23.19 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=15.0
Q ss_pred EEEEecCCCcccceeEEee
Q 005256 532 LTLQASNLTSQDLTLTVLA 550 (705)
Q Consensus 532 LTLqAsNLTsedLtLTVLA 550 (705)
.+|+-+||+.+|--+=.-|
T Consensus 75 ~~L~I~~l~~~Dsa~YyCa 93 (118)
T d1i8lc_ 75 VNLTIQGLRAMDTGLYICK 93 (118)
T ss_dssp EEEEECSCCGGGCEEEEEE
T ss_pred EEEEeeccccCCCEEEEEe
Confidence 7888899999997665444
No 9
>d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
Probab=15.76 E-value=13 Score=31.45 Aligned_cols=10 Identities=60% Similarity=1.029 Sum_probs=7.8
Q ss_pred CCcccee-eec
Q 005256 633 GLGCTHL-WLQ 642 (705)
Q Consensus 633 glgCTHL-WLQ 642 (705)
=|||||+ ||+
T Consensus 70 vLGCTHyP~l~ 80 (147)
T d1b74a2 70 ILGCTHYPLLK 80 (147)
T ss_dssp EECCCCTTSCH
T ss_pred EEecCcchhHH
Confidence 4899999 654
No 10
>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}
Probab=15.21 E-value=41 Score=25.20 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=29.1
Q ss_pred eecCCCCcccCCCcceeEEeeccccCCCCCcccccc-CCceEEEEecCCCcccceeE
Q 005256 492 FFKQPTSWRPRISRDLMISVASEISGQSSEANERVT-QLPVLTLQASNLTSQDLTLT 547 (705)
Q Consensus 492 FFKQpTsWRPr~srDLmISVaSEmS~q~~g~~~r~~-QLPvLTLqAsNLTsedLtLT 547 (705)
+||| .|.-+.-+|+++.+........-..+.. .-...+|+-+|++.+|=-+-
T Consensus 20 Wyrq----~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y 72 (94)
T d2gj6d1 20 WYRQ----YSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATY 72 (94)
T ss_dssp EEEE----CTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred EEEE----CCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccc
Confidence 4664 5666777888876554333222222221 11227788888888885544
Done!