Query 005258
Match_columns 705
No_of_seqs 49 out of 51
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 20:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kwh_A RAla-binding protein 1; 50.9 5.2 0.00018 32.9 1.2 19 323-341 37-55 (56)
2 1l6x_B Minimized B-domain of p 17.1 43 0.0015 25.2 1.0 13 665-677 11-23 (34)
3 1zda_A Mini protein A domain, 15.7 50 0.0017 25.4 1.0 13 665-677 16-28 (38)
4 2a67_A Isochorismatase family 14.1 1.8E+02 0.006 26.3 4.5 31 325-355 23-53 (167)
5 1iyr_A DFF45, DNA fragmentatio 13.0 88 0.003 28.6 2.1 47 457-509 37-83 (111)
6 4az3_B Lysosomal protective pr 12.0 82 0.0028 28.4 1.6 14 507-520 142-155 (155)
7 1v54_I STA, cytochrome C oxida 10.9 1.1E+02 0.0037 26.0 1.9 27 386-412 45-72 (73)
8 3lqy_A Putative isochorismatas 10.3 2E+02 0.0068 26.5 3.6 32 326-357 31-62 (190)
9 1cix_A Protein (tachystatin A) 10.0 62 0.0021 25.3 0.1 9 342-350 13-21 (44)
10 2l2l_A Transcriptional repress 9.4 1.6E+02 0.0054 23.2 2.1 14 327-340 5-18 (43)
No 1
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=50.89 E-value=5.2 Score=32.88 Aligned_cols=19 Identities=42% Similarity=0.826 Sum_probs=17.8
Q ss_pred cchhchHHHHHHHHHHHHH
Q 005258 323 ETLWEHQDLIDQLKTELKK 341 (705)
Q Consensus 323 e~~wehqdlieqlK~elk~ 341 (705)
|.|||=|.+|-|||+.||.
T Consensus 37 E~lWeVQriiTqLKRKLk~ 55 (56)
T 2kwh_A 37 ERLWEVQRILTALKRKLRE 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 7899999999999999985
No 2
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=17.15 E-value=43 Score=25.23 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=11.6
Q ss_pred hhhcCCCCChhHH
Q 005258 665 RVLNMTKLTTDQL 677 (705)
Q Consensus 665 RVLrMs~lt~eQL 677 (705)
-||+|+.||++|-
T Consensus 11 evLh~~nLtEeQr 23 (34)
T 1l6x_B 11 EALHDPNLNEEQR 23 (34)
T ss_dssp HHHHCTTCCHHHH
T ss_pred HHHcCCCCCHHHH
Confidence 5899999999984
No 3
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=15.71 E-value=50 Score=25.42 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=11.6
Q ss_pred hhhcCCCCChhHH
Q 005258 665 RVLNMTKLTTDQL 677 (705)
Q Consensus 665 RVLrMs~lt~eQL 677 (705)
-||+|+.||+||-
T Consensus 16 evLh~~nLtEeQr 28 (38)
T 1zda_A 16 EALHDPNLNEEQR 28 (38)
T ss_dssp HHHSCSSSCTTHH
T ss_pred HHHcCCCCCHHHH
Confidence 5899999999984
No 4
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis}
Probab=14.14 E-value=1.8e+02 Score=26.27 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=27.0
Q ss_pred hhchHHHHHHHHHHHHHhhhcCCceecccCC
Q 005258 325 LWEHQDLIDQLKTELKKARAIGLPTILEESE 355 (705)
Q Consensus 325 ~wehqdlieqlK~elk~~R~~gl~tilee~E 355 (705)
.|....+++.+..-++.+|+.|.|+|.-...
T Consensus 23 ~~~~~~~~~~i~~li~~ar~~g~pVi~t~~~ 53 (167)
T 2a67_A 23 LYRLPAVLDKVNQRIAVYRQHHAPIIFVQHE 53 (167)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCeEEEEEeC
Confidence 5678889999999999999999999986653
No 5
>1iyr_A DFF45, DNA fragmentation factor alpha subunit; apoptosis, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; NMR {Homo sapiens} SCOP: a.164.1.1 PDB: 1koy_A*
Probab=13.03 E-value=88 Score=28.61 Aligned_cols=47 Identities=30% Similarity=0.256 Sum_probs=35.1
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhHHhhHHhhhcCCCCCCCchhhHhhhhhhHHH
Q 005258 457 HSDLEVVYVGQLCLSWEILHWQYEKSLELWESDPYGICRYNEVAGEFQQFQVL 509 (705)
Q Consensus 457 y~DLE~vYVaQiCLSWEaL~WqY~k~~~l~~sd~~~~~~Yn~VAqEFQQFQVL 509 (705)
.+|||+|-=--.=-==.||.|--++...+... |-++.+-.-||-|-|
T Consensus 37 sqdLElV~kedpkALa~aL~Wd~~kt~avqqA------C~qELs~RlQQVQsL 83 (111)
T 1iyr_A 37 SQDLELVTKEDPKALAVALNWDIKKTETVQEA------CERELALRLQQTQSL 83 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHTCSCHHHHHHHHHH------HHHHHHHHHGGGCCC
T ss_pred HHHHHHHHccCHHHHHHHHcccHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 68999875322222336899999999888775 888999999998865
No 6
>4az3_B Lysosomal protective protein 20 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_B*
Probab=12.04 E-value=82 Score=28.43 Aligned_cols=14 Identities=29% Similarity=0.861 Sum_probs=12.1
Q ss_pred HHHHHHhhhcCCCC
Q 005258 507 QVLMQRFIENEPFE 520 (705)
Q Consensus 507 QVLLQRFIENEPFq 520 (705)
..|++|||.++||+
T Consensus 142 l~m~~~fl~g~pFe 155 (155)
T 4az3_B 142 FTMFSRFLNKQPYE 155 (155)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHcCCCCC
Confidence 35899999999995
No 7
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=10.86 E-value=1.1e+02 Score=26.05 Aligned_cols=27 Identities=30% Similarity=0.640 Sum_probs=21.9
Q ss_pred HHHHHHHhhhhhhh-hhhhhccccccCC
Q 005258 386 KSYRERMRKFDILN-YQKMYTIGFLQSK 412 (705)
Q Consensus 386 kkY~ERMrkfDiLn-~Qkl~aig~lqsk 412 (705)
+.|.|=++.+|.+- +..|.+.|++||-
T Consensus 45 ~aYadFYknYD~~k~ferMk~aG~fqS~ 72 (73)
T 1v54_I 45 KAYADFYRNYDSMKDFEEMRKAGIFQSA 72 (73)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHhcCcHHHHHHHHHccccccC
Confidence 57888888888864 7889999998873
No 8
>3lqy_A Putative isochorismatase hydrolase; structural genomics, PSI-2, PROT structure initiative, midwest center for structural genomic; 1.75A {Oleispira antarctica} SCOP: c.33.1.0
Probab=10.31 E-value=2e+02 Score=26.47 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=26.9
Q ss_pred hchHHHHHHHHHHHHHhhhcCCceecccCCCc
Q 005258 326 WEHQDLIDQLKTELKKARAIGLPTILEESESP 357 (705)
Q Consensus 326 wehqdlieqlK~elk~~R~~gl~tilee~Esp 357 (705)
.....+|+.+..-++.+|+.|+|+|.-....|
T Consensus 31 ~~~~~~i~~i~~l~~~ar~~g~pVi~t~~~~~ 62 (190)
T 3lqy_A 31 VGTEAAAEQGAKLLAKFRQQGLPVVHVRHEFP 62 (190)
T ss_dssp BTHHHHHHHHHHHHHHHHHTTCCEEEEEECC-
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEEEecC
Confidence 45678999999999999999999998776544
No 9
>1cix_A Protein (tachystatin A); antimicrobial peptide, chitin-binding peptide; NMR {Tachypleus tridentatus} SCOP: g.3.6.2
Probab=10.03 E-value=62 Score=25.30 Aligned_cols=9 Identities=67% Similarity=1.106 Sum_probs=7.6
Q ss_pred hhhcCCcee
Q 005258 342 ARAIGLPTI 350 (705)
Q Consensus 342 ~R~~gl~ti 350 (705)
||..|||||
T Consensus 13 v~s~glpt~ 21 (44)
T 1cix_A 13 VRSYGLPTI 21 (44)
T ss_dssp SCCTTSCSC
T ss_pred EEeCCCCCc
Confidence 678899987
No 10
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=9.44 E-value=1.6e+02 Score=23.16 Aligned_cols=14 Identities=50% Similarity=0.786 Sum_probs=11.6
Q ss_pred chHHHHHHHHHHHH
Q 005258 327 EHQDLIDQLKTELK 340 (705)
Q Consensus 327 ehqdlieqlK~elk 340 (705)
|++-+|.+|+.||+
T Consensus 5 ere~~i~~LreeLR 18 (43)
T 2l2l_A 5 ERERMIKQLKEELR 18 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67889999998864
Done!