Query 005259
Match_columns 705
No_of_seqs 169 out of 193
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 20:38:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09787 Golgin_A5: Golgin sub 100.0 2E-32 4.4E-37 308.2 39.7 373 271-673 108-511 (511)
2 KOG4677 Golgi integral membran 100.0 4E-29 8.6E-34 268.0 41.2 375 245-683 157-551 (554)
3 KOG0612 Rho-associated, coiled 99.5 9.3E-12 2E-16 147.6 29.4 319 239-588 534-883 (1317)
4 KOG0963 Transcription factor/C 99.2 2.3E-07 4.9E-12 105.5 37.2 143 301-443 193-342 (629)
5 TIGR02169 SMC_prok_A chromosom 99.0 2E-05 4.3E-10 96.5 46.6 8 671-678 613-620 (1164)
6 PF08172 CASP_C: CASP C termin 98.9 4.1E-08 8.8E-13 102.5 17.7 49 636-684 195-243 (248)
7 TIGR02169 SMC_prok_A chromosom 98.9 4.2E-05 9.2E-10 93.6 44.8 10 648-657 562-571 (1164)
8 KOG0161 Myosin class II heavy 98.9 3.1E-05 6.8E-10 98.6 43.5 156 243-405 980-1144(1930)
9 TIGR02168 SMC_prok_B chromosom 98.8 0.00011 2.3E-09 89.8 45.4 25 549-573 462-486 (1179)
10 KOG0161 Myosin class II heavy 98.8 0.00013 2.7E-09 93.3 45.9 39 547-585 1188-1226(1930)
11 PF07888 CALCOCO1: Calcium bin 98.7 0.00042 9E-09 79.4 43.0 72 513-588 386-457 (546)
12 PRK02224 chromosome segregatio 98.6 0.0022 4.8E-08 77.5 48.1 13 517-529 625-637 (880)
13 PF10174 Cast: RIM-binding pro 98.6 0.00041 8.9E-09 82.8 40.4 73 510-590 292-364 (775)
14 PRK02224 chromosome segregatio 98.6 0.0018 4E-08 78.2 46.4 37 342-378 264-300 (880)
15 KOG0612 Rho-associated, coiled 98.5 0.0023 5E-08 78.1 43.2 185 290-479 494-693 (1317)
16 KOG0971 Microtubule-associated 98.5 0.0039 8.5E-08 74.0 43.7 119 249-386 229-347 (1243)
17 TIGR00606 rad50 rad50. This fa 98.5 0.0018 3.8E-08 82.0 44.6 29 550-578 1063-1091(1311)
18 COG1196 Smc Chromosome segrega 98.5 0.0048 1E-07 77.3 47.9 98 278-376 188-286 (1163)
19 PF07888 CALCOCO1: Calcium bin 98.5 0.0054 1.2E-07 70.6 44.8 45 544-588 420-464 (546)
20 COG1196 Smc Chromosome segrega 98.5 0.0049 1.1E-07 77.3 46.8 38 547-584 459-496 (1163)
21 KOG0976 Rho/Rac1-interacting s 98.5 0.0087 1.9E-07 70.4 44.3 79 449-528 280-360 (1265)
22 TIGR00606 rad50 rad50. This fa 98.4 0.0043 9.3E-08 78.6 44.5 18 556-573 1055-1072(1311)
23 PF00038 Filament: Intermediat 98.4 0.0041 8.8E-08 66.4 37.9 32 544-575 265-296 (312)
24 KOG0977 Nuclear envelope prote 98.4 0.0011 2.5E-08 75.9 35.2 84 497-580 295-381 (546)
25 PF00261 Tropomyosin: Tropomyo 98.4 0.00034 7.5E-09 72.6 28.2 223 245-476 2-227 (237)
26 PF05701 WEMBL: Weak chloropla 98.4 0.01 2.2E-07 68.5 42.6 96 496-592 321-416 (522)
27 KOG0976 Rho/Rac1-interacting s 98.3 0.016 3.5E-07 68.3 41.1 190 383-579 282-500 (1265)
28 PRK03918 chromosome segregatio 98.3 0.024 5.3E-07 68.5 44.9 14 650-663 814-827 (880)
29 PF10174 Cast: RIM-binding pro 98.3 0.017 3.6E-07 69.5 41.5 124 280-404 228-361 (775)
30 PF00261 Tropomyosin: Tropomyo 98.3 0.0031 6.6E-08 65.6 31.4 49 541-589 169-217 (237)
31 KOG4674 Uncharacterized conser 98.3 0.031 6.7E-07 71.6 45.1 222 306-528 800-1041(1822)
32 KOG4674 Uncharacterized conser 98.2 0.045 9.8E-07 70.2 45.8 100 270-373 655-754 (1822)
33 KOG0996 Structural maintenance 98.2 0.028 6.1E-07 68.8 42.0 61 499-574 543-603 (1293)
34 PRK03918 chromosome segregatio 98.2 0.036 7.7E-07 67.1 45.8 27 451-477 403-429 (880)
35 PRK04863 mukB cell division pr 98.2 0.034 7.3E-07 71.2 44.4 186 277-472 287-482 (1486)
36 KOG0996 Structural maintenance 98.2 0.031 6.7E-07 68.5 41.5 46 544-589 545-590 (1293)
37 PF09726 Macoilin: Transmembra 98.2 0.013 2.8E-07 69.8 38.1 220 252-476 422-652 (697)
38 PF12128 DUF3584: Protein of u 98.2 0.058 1.2E-06 68.1 46.9 15 189-203 188-202 (1201)
39 PF15070 GOLGA2L5: Putative go 98.1 0.024 5.2E-07 66.7 37.5 58 246-303 6-63 (617)
40 PF09726 Macoilin: Transmembra 98.1 0.0035 7.6E-08 74.5 30.3 56 331-386 441-496 (697)
41 KOG1029 Endocytic adaptor prot 98.0 0.021 4.6E-07 67.2 34.7 145 420-575 446-598 (1118)
42 KOG4643 Uncharacterized coiled 98.0 0.074 1.6E-06 64.4 42.9 170 308-478 261-461 (1195)
43 PF12128 DUF3584: Protein of u 98.0 0.064 1.4E-06 67.7 41.5 16 492-507 470-485 (1201)
44 KOG0977 Nuclear envelope prote 98.0 0.031 6.6E-07 64.6 34.9 279 280-582 46-369 (546)
45 PF09787 Golgin_A5: Golgin sub 98.0 0.0083 1.8E-07 69.0 30.1 139 341-480 107-248 (511)
46 KOG1029 Endocytic adaptor prot 97.9 0.041 9E-07 64.9 33.9 165 359-538 411-575 (1118)
47 PF00038 Filament: Intermediat 97.9 0.058 1.3E-06 57.6 38.2 31 281-311 9-39 (312)
48 PRK04863 mukB cell division pr 97.8 0.25 5.4E-06 63.7 44.4 32 495-526 569-600 (1486)
49 KOG0933 Structural maintenance 97.8 0.084 1.8E-06 64.0 34.8 32 634-665 1012-1043(1174)
50 PF05701 WEMBL: Weak chloropla 97.8 0.14 3E-06 59.4 45.3 144 428-586 277-424 (522)
51 KOG4673 Transcription factor T 97.8 0.16 3.5E-06 59.6 37.2 80 251-330 449-542 (961)
52 PF12718 Tropomyosin_1: Tropom 97.7 0.0086 1.9E-07 58.1 21.4 139 340-480 4-142 (143)
53 KOG0999 Microtubule-associated 97.7 0.043 9.3E-07 62.8 28.5 195 372-589 44-242 (772)
54 PF15070 GOLGA2L5: Putative go 97.7 0.25 5.3E-06 58.5 36.2 67 252-328 1-67 (617)
55 KOG4673 Transcription factor T 97.6 0.26 5.7E-06 57.8 41.8 51 435-485 714-764 (961)
56 KOG4643 Uncharacterized coiled 97.6 0.35 7.6E-06 58.9 40.1 62 388-453 410-471 (1195)
57 KOG0250 DNA repair protein RAD 97.5 0.26 5.7E-06 60.6 34.1 227 334-583 219-457 (1074)
58 KOG0994 Extracellular matrix g 97.5 0.56 1.2E-05 57.9 40.0 37 548-584 1710-1746(1758)
59 PF14662 CCDC155: Coiled-coil 97.5 0.14 3.1E-06 52.0 26.3 102 353-459 63-164 (193)
60 PF01576 Myosin_tail_1: Myosin 97.4 3.4E-05 7.3E-10 93.3 0.0 61 419-479 315-375 (859)
61 KOG0250 DNA repair protein RAD 97.4 0.49 1.1E-05 58.3 34.1 38 436-473 362-400 (1074)
62 PHA02562 46 endonuclease subun 97.4 0.28 6E-06 56.4 31.0 30 347-376 217-246 (562)
63 PHA02562 46 endonuclease subun 97.3 0.22 4.7E-06 57.2 29.7 9 630-638 472-480 (562)
64 PF01576 Myosin_tail_1: Myosin 97.3 6E-05 1.3E-09 91.2 0.0 53 430-482 319-371 (859)
65 PF05483 SCP-1: Synaptonemal c 97.3 0.73 1.6E-05 54.4 46.0 227 252-481 223-520 (786)
66 KOG0971 Microtubule-associated 97.2 0.91 2E-05 55.0 49.4 37 650-686 652-688 (1243)
67 KOG0933 Structural maintenance 97.2 1.1 2.3E-05 55.0 39.4 111 290-407 691-808 (1174)
68 PF05557 MAD: Mitotic checkpoi 97.2 8.8E-05 1.9E-09 88.2 0.0 28 545-572 403-430 (722)
69 KOG0995 Centromere-associated 97.1 0.83 1.8E-05 53.1 40.7 103 275-381 220-325 (581)
70 KOG0980 Actin-binding protein 97.1 1.1 2.5E-05 54.1 41.2 106 344-475 411-516 (980)
71 PRK04778 septation ring format 97.1 0.96 2.1E-05 53.0 37.7 25 388-412 284-308 (569)
72 COG4942 Membrane-bound metallo 97.0 0.72 1.6E-05 52.1 28.6 50 278-327 61-110 (420)
73 PF12718 Tropomyosin_1: Tropom 97.0 0.15 3.3E-06 49.5 20.6 125 279-412 17-141 (143)
74 PRK09039 hypothetical protein; 97.0 0.21 4.6E-06 55.0 24.1 123 275-402 45-167 (343)
75 KOG0995 Centromere-associated 97.0 1.1 2.4E-05 52.0 42.1 86 245-331 236-321 (581)
76 PF05667 DUF812: Protein of un 97.0 0.6 1.3E-05 55.1 28.5 82 499-586 448-529 (594)
77 PF06160 EzrA: Septation ring 96.8 1.6 3.5E-05 51.1 38.7 148 386-533 278-435 (560)
78 PF09755 DUF2046: Uncharacteri 96.8 1.1 2.3E-05 48.9 27.4 202 252-461 52-297 (310)
79 KOG0964 Structural maintenance 96.8 2.3 5E-05 52.1 39.5 23 513-535 426-448 (1200)
80 KOG0978 E3 ubiquitin ligase in 96.8 2 4.4E-05 51.3 32.8 50 424-473 544-593 (698)
81 PRK11281 hypothetical protein; 96.7 3 6.5E-05 52.7 47.7 44 640-683 522-569 (1113)
82 PF05557 MAD: Mitotic checkpoi 96.6 0.0029 6.3E-08 75.5 5.9 35 546-580 501-535 (722)
83 KOG0994 Extracellular matrix g 96.5 3.5 7.6E-05 51.4 39.3 41 547-587 1695-1735(1758)
84 PRK01156 chromosome segregatio 96.5 3.2 7E-05 50.9 44.0 15 645-659 822-836 (895)
85 KOG0964 Structural maintenance 96.5 3.3 7.1E-05 50.9 39.2 45 359-404 274-318 (1200)
86 PF05622 HOOK: HOOK protein; 96.5 0.00066 1.4E-08 80.8 0.0 77 302-379 337-413 (713)
87 PRK04778 septation ring format 96.5 2.7 5.9E-05 49.3 39.0 42 547-588 389-430 (569)
88 COG1579 Zn-ribbon protein, pos 96.4 0.9 2E-05 47.9 22.5 102 276-386 21-125 (239)
89 PF09755 DUF2046: Uncharacteri 96.4 1.9 4.1E-05 47.0 33.6 117 254-386 33-150 (310)
90 KOG0018 Structural maintenance 96.3 4.4 9.5E-05 50.3 31.0 33 548-580 870-902 (1141)
91 KOG0946 ER-Golgi vesicle-tethe 96.3 1.5 3.3E-05 52.8 25.7 61 244-304 653-713 (970)
92 PRK01156 chromosome segregatio 96.3 4.4 9.6E-05 49.7 44.8 18 249-266 167-184 (895)
93 PF09730 BicD: Microtubule-ass 96.3 4.1 8.9E-05 49.2 41.7 331 252-589 35-467 (717)
94 COG1579 Zn-ribbon protein, pos 96.2 1.5 3.3E-05 46.2 22.8 18 463-480 152-169 (239)
95 PF14662 CCDC155: Coiled-coil 96.2 1.8 3.8E-05 44.3 27.4 124 274-402 13-139 (193)
96 PF09730 BicD: Microtubule-ass 96.1 5 0.00011 48.5 42.3 37 446-482 265-301 (717)
97 PF13514 AAA_27: AAA domain 96.0 6.8 0.00015 49.6 43.3 156 419-588 809-976 (1111)
98 PF15619 Lebercilin: Ciliary p 96.0 2.1 4.6E-05 43.8 26.2 128 332-473 57-191 (194)
99 PF15619 Lebercilin: Ciliary p 96.0 2.2 4.8E-05 43.6 23.9 77 245-332 13-89 (194)
100 PF10473 CENP-F_leu_zip: Leuci 96.0 1.5 3.2E-05 42.8 19.7 96 292-392 5-100 (140)
101 KOG4677 Golgi integral membran 96.0 3.7 8.1E-05 46.6 25.2 89 388-478 208-296 (554)
102 PRK09039 hypothetical protein; 96.0 1.8 3.8E-05 47.9 22.9 136 435-588 63-198 (343)
103 KOG0980 Actin-binding protein 95.9 6.4 0.00014 48.1 35.6 92 390-481 421-515 (980)
104 COG4942 Membrane-bound metallo 95.9 4.4 9.5E-05 46.0 31.4 39 284-322 39-77 (420)
105 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.7 1.2 2.6E-05 42.5 18.0 110 352-473 5-118 (132)
106 TIGR02680 conserved hypothetic 95.7 10 0.00022 49.1 35.2 8 150-157 636-643 (1353)
107 TIGR03185 DNA_S_dndD DNA sulfu 95.7 6.8 0.00015 46.7 36.3 45 291-335 210-254 (650)
108 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.5 1.7 3.7E-05 41.5 18.0 123 438-581 9-131 (132)
109 KOG2129 Uncharacterized conser 95.4 4.8 0.0001 45.4 23.3 154 286-456 139-316 (552)
110 PF08317 Spc7: Spc7 kinetochor 95.3 1.8 4E-05 47.2 19.8 123 273-403 146-268 (325)
111 TIGR01843 type_I_hlyD type I s 95.2 6.2 0.00013 43.3 25.4 7 243-249 68-74 (423)
112 KOG0999 Microtubule-associated 95.2 8.5 0.00018 44.9 37.7 83 350-437 107-189 (772)
113 KOG0982 Centrosomal protein Nu 95.1 5.1 0.00011 45.4 22.3 143 233-379 264-418 (502)
114 PF14992 TMCO5: TMCO5 family 95.0 6.6 0.00014 42.4 23.4 37 367-404 14-50 (280)
115 PF07111 HCR: Alpha helical co 95.0 11 0.00024 45.1 43.4 38 409-446 329-366 (739)
116 KOG0963 Transcription factor/C 94.9 11 0.00023 44.7 40.0 46 639-685 575-620 (629)
117 PF13851 GAS: Growth-arrest sp 94.9 5.4 0.00012 40.9 23.9 95 281-383 39-133 (201)
118 PF08317 Spc7: Spc7 kinetochor 94.8 3.3 7.2E-05 45.3 20.1 23 115-137 8-30 (325)
119 PF08614 ATG16: Autophagy prot 94.8 0.26 5.6E-06 49.9 10.8 106 273-382 71-183 (194)
120 PF06705 SF-assemblin: SF-asse 94.7 6.6 0.00014 41.2 26.1 127 272-408 81-219 (247)
121 COG4372 Uncharacterized protei 94.7 9.4 0.0002 42.9 30.3 16 285-300 66-81 (499)
122 KOG0018 Structural maintenance 94.6 17 0.00037 45.5 37.1 42 333-374 231-272 (1141)
123 PF05622 HOOK: HOOK protein; 94.5 0.01 2.2E-07 70.9 0.0 26 544-569 498-523 (713)
124 KOG1003 Actin filament-coating 94.5 6.6 0.00014 40.4 26.8 48 541-588 137-184 (205)
125 PF06818 Fez1: Fez1; InterPro 94.4 7.2 0.00016 40.3 22.5 154 270-427 8-172 (202)
126 PF09728 Taxilin: Myosin-like 94.4 9.5 0.00021 41.7 41.6 67 454-530 203-269 (309)
127 PF10481 CENP-F_N: Cenp-F N-te 94.4 1.8 3.8E-05 46.4 15.9 55 543-597 76-130 (307)
128 PF04849 HAP1_N: HAP1 N-termin 94.3 9.9 0.00021 41.6 26.0 24 360-383 163-186 (306)
129 TIGR03007 pepcterm_ChnLen poly 94.3 12 0.00027 42.7 25.1 39 364-403 254-292 (498)
130 PF07111 HCR: Alpha helical co 94.3 16 0.00035 43.9 38.5 38 633-670 422-459 (739)
131 PF09728 Taxilin: Myosin-like 94.2 10 0.00022 41.4 37.0 114 258-374 39-152 (309)
132 PF13851 GAS: Growth-arrest sp 94.1 8.2 0.00018 39.6 25.3 76 497-572 99-174 (201)
133 PF14915 CCDC144C: CCDC144C pr 94.0 11 0.00025 41.0 37.3 26 562-587 221-246 (305)
134 PF05667 DUF812: Protein of un 93.9 18 0.00039 43.1 33.8 35 548-582 557-591 (594)
135 TIGR01005 eps_transp_fam exopo 93.9 20 0.00042 43.4 32.9 31 559-589 373-403 (754)
136 KOG0962 DNA repair protein RAD 93.8 27 0.00058 44.8 36.8 66 493-561 1017-1082(1294)
137 TIGR03007 pepcterm_ChnLen poly 93.7 16 0.00034 41.8 29.1 32 558-589 351-382 (498)
138 PRK10884 SH3 domain-containing 93.5 1.1 2.4E-05 46.2 12.5 49 332-380 121-169 (206)
139 COG0419 SbcC ATPase involved i 93.5 26 0.00056 43.6 46.1 12 246-257 234-245 (908)
140 TIGR01005 eps_transp_fam exopo 93.5 23 0.0005 42.9 25.7 25 88-112 70-95 (754)
141 PF14915 CCDC144C: CCDC144C pr 93.4 14 0.0003 40.3 38.7 168 306-484 33-210 (305)
142 PF13514 AAA_27: AAA domain 93.4 30 0.00066 43.9 45.0 139 243-381 149-327 (1111)
143 PF06160 EzrA: Septation ring 93.3 22 0.00047 41.9 43.4 37 544-580 375-411 (560)
144 PRK10929 putative mechanosensi 93.2 33 0.00071 43.8 50.9 34 447-480 280-313 (1109)
145 smart00787 Spc7 Spc7 kinetocho 93.1 7.4 0.00016 42.6 18.7 121 274-402 142-262 (312)
146 KOG0946 ER-Golgi vesicle-tethe 93.1 27 0.00059 42.7 32.4 36 549-584 905-940 (970)
147 PF15254 CCDC14: Coiled-coil d 93.0 27 0.00059 42.5 24.0 44 15-58 12-59 (861)
148 PRK10929 putative mechanosensi 93.0 35 0.00075 43.6 39.7 17 388-404 217-233 (1109)
149 TIGR01843 type_I_hlyD type I s 93.0 17 0.00037 39.9 25.9 32 342-373 150-181 (423)
150 PF10212 TTKRSYEDQ: Predicted 92.9 23 0.0005 41.4 23.9 61 515-575 451-514 (518)
151 TIGR03185 DNA_S_dndD DNA sulfu 92.9 26 0.00056 41.9 35.0 36 344-379 217-252 (650)
152 PF04156 IncA: IncA protein; 92.6 8 0.00017 38.6 16.8 45 280-324 78-122 (191)
153 COG0419 SbcC ATPase involved i 92.4 35 0.00077 42.4 47.8 15 246-260 324-338 (908)
154 KOG1003 Actin filament-coating 92.3 15 0.00033 37.9 27.1 32 346-377 7-38 (205)
155 PF05010 TACC: Transforming ac 92.3 16 0.00034 38.0 28.2 115 436-575 87-202 (207)
156 smart00787 Spc7 Spc7 kinetocho 92.1 13 0.00029 40.7 19.0 59 341-400 223-285 (312)
157 KOG1853 LIS1-interacting prote 92.0 20 0.00043 38.4 22.2 96 347-454 49-155 (333)
158 PLN03188 kinesin-12 family pro 91.8 48 0.0011 42.5 37.8 50 541-590 1197-1246(1320)
159 COG3883 Uncharacterized protei 91.7 22 0.00047 38.3 25.5 37 347-383 131-167 (265)
160 KOG0982 Centrosomal protein Nu 91.7 29 0.00062 39.7 24.1 86 290-382 200-289 (502)
161 PF05010 TACC: Transforming ac 91.7 19 0.0004 37.5 29.2 73 393-468 118-190 (207)
162 PF10168 Nup88: Nuclear pore c 91.5 40 0.00088 41.1 24.3 78 496-577 637-714 (717)
163 COG4372 Uncharacterized protei 91.4 29 0.00063 39.2 31.2 75 312-386 75-152 (499)
164 PF08614 ATG16: Autophagy prot 91.2 0.92 2E-05 45.9 8.4 47 544-590 126-172 (194)
165 PF05911 DUF869: Plant protein 91.1 46 0.001 40.9 27.9 120 345-465 591-713 (769)
166 PF04156 IncA: IncA protein; 90.8 19 0.00041 35.9 17.7 56 419-474 131-186 (191)
167 PF04849 HAP1_N: HAP1 N-termin 90.6 30 0.00066 38.0 25.6 26 307-332 163-188 (306)
168 KOG4360 Uncharacterized coiled 90.1 42 0.00092 39.2 20.8 90 309-399 164-253 (596)
169 PF12325 TMF_TATA_bd: TATA ele 90.0 18 0.0004 34.5 15.8 45 359-404 70-114 (120)
170 PF12325 TMF_TATA_bd: TATA ele 89.9 12 0.00026 35.7 14.0 87 288-375 21-107 (120)
171 KOG0249 LAR-interacting protei 89.8 28 0.00062 42.0 19.6 37 655-691 582-619 (916)
172 PF10481 CENP-F_N: Cenp-F N-te 89.7 13 0.00029 40.0 15.5 104 364-479 18-121 (307)
173 PF05483 SCP-1: Synaptonemal c 89.6 55 0.0012 39.5 47.5 58 275-332 218-275 (786)
174 KOG4360 Uncharacterized coiled 89.6 15 0.00033 42.6 16.8 136 237-376 159-301 (596)
175 PRK15178 Vi polysaccharide exp 89.4 46 0.00099 38.3 23.4 80 517-597 291-379 (434)
176 COG2433 Uncharacterized conser 89.2 6.9 0.00015 46.2 14.0 88 289-377 421-508 (652)
177 PF11559 ADIP: Afadin- and alp 89.0 14 0.00031 35.7 14.3 55 278-332 68-122 (151)
178 PF04111 APG6: Autophagy prote 88.7 20 0.00043 39.3 16.7 28 560-587 104-131 (314)
179 PF09789 DUF2353: Uncharacteri 88.7 43 0.00094 37.0 22.6 38 441-478 191-228 (319)
180 PRK10884 SH3 domain-containing 88.4 7.4 0.00016 40.3 12.5 43 357-400 125-167 (206)
181 PF11559 ADIP: Afadin- and alp 88.3 15 0.00032 35.6 13.9 80 273-352 70-149 (151)
182 KOG1937 Uncharacterized conser 88.0 57 0.0012 37.6 24.9 70 511-586 358-427 (521)
183 PF15397 DUF4618: Domain of un 88.0 42 0.00091 36.1 28.6 54 351-405 82-139 (258)
184 TIGR02680 conserved hypothetic 87.9 1E+02 0.0022 40.4 40.0 13 639-651 629-641 (1353)
185 COG2433 Uncharacterized conser 87.7 15 0.00032 43.6 15.5 94 350-459 415-508 (652)
186 PF15397 DUF4618: Domain of un 87.6 45 0.00097 35.9 29.1 106 277-382 14-138 (258)
187 PF06785 UPF0242: Uncharacteri 87.6 23 0.00049 39.3 15.8 109 260-372 73-184 (401)
188 PF12240 Angiomotin_C: Angiomo 87.5 37 0.00081 35.2 16.5 81 311-407 3-92 (205)
189 PF10473 CENP-F_leu_zip: Leuci 87.3 31 0.00068 33.8 20.8 40 347-386 21-60 (140)
190 TIGR03017 EpsF chain length de 87.3 56 0.0012 36.7 24.9 52 276-327 171-231 (444)
191 PF10205 KLRAQ: Predicted coil 86.9 9.3 0.0002 35.6 10.8 67 519-593 5-71 (102)
192 PF00769 ERM: Ezrin/radixin/mo 86.8 46 0.001 35.3 17.9 78 309-398 10-87 (246)
193 TIGR03017 EpsF chain length de 86.4 62 0.0013 36.3 25.8 16 91-106 68-83 (444)
194 PF00769 ERM: Ezrin/radixin/mo 86.1 47 0.001 35.2 17.2 36 441-476 84-119 (246)
195 PF05335 DUF745: Protein of un 86.1 44 0.00095 34.3 18.1 113 335-466 59-171 (188)
196 COG4913 Uncharacterized protei 86.1 93 0.002 38.1 27.3 136 433-569 692-851 (1104)
197 KOG0249 LAR-interacting protei 86.1 91 0.002 38.0 22.7 43 343-386 210-252 (916)
198 PF10498 IFT57: Intra-flagella 86.0 32 0.00069 38.6 16.6 37 286-322 216-252 (359)
199 COG3883 Uncharacterized protei 85.0 61 0.0013 35.0 22.4 40 545-584 187-226 (265)
200 PF09304 Cortex-I_coil: Cortex 84.7 36 0.00077 32.0 15.7 17 388-404 60-76 (107)
201 COG1842 PspA Phage shock prote 84.4 58 0.0013 34.3 21.1 53 334-386 15-67 (225)
202 COG1340 Uncharacterized archae 84.4 69 0.0015 35.1 34.2 45 544-588 217-261 (294)
203 TIGR01010 BexC_CtrB_KpsE polys 84.0 72 0.0016 35.1 24.0 33 558-590 274-306 (362)
204 PF10168 Nup88: Nuclear pore c 84.0 48 0.001 40.5 18.0 12 150-161 459-470 (717)
205 KOG1853 LIS1-interacting prote 83.9 67 0.0014 34.6 22.4 118 347-473 63-184 (333)
206 KOG4593 Mitotic checkpoint pro 83.9 1.1E+02 0.0024 37.1 42.8 32 434-465 239-270 (716)
207 PF10186 Atg14: UV radiation r 83.3 63 0.0014 33.8 22.9 27 633-660 199-225 (302)
208 PF06005 DUF904: Protein of un 83.1 21 0.00046 31.1 10.8 63 510-587 9-71 (72)
209 TIGR01000 bacteriocin_acc bact 82.0 1E+02 0.0022 35.3 22.4 38 547-584 275-313 (457)
210 PF05911 DUF869: Plant protein 81.0 1.5E+02 0.0033 36.7 34.0 39 547-585 271-309 (769)
211 KOG0288 WD40 repeat protein Ti 81.0 76 0.0016 36.3 16.7 30 413-442 92-121 (459)
212 PF15066 CAGE1: Cancer-associa 80.1 1.2E+02 0.0027 35.1 28.7 47 423-469 388-434 (527)
213 PF06818 Fez1: Fez1; InterPro 79.8 81 0.0018 32.8 22.8 40 433-472 67-106 (202)
214 PF10267 Tmemb_cc2: Predicted 79.6 1.1E+02 0.0024 34.9 17.7 12 396-407 320-331 (395)
215 PLN02939 transferase, transfer 79.4 1.9E+02 0.0041 36.8 29.8 27 419-445 258-284 (977)
216 PF07889 DUF1664: Protein of u 79.1 30 0.00065 33.4 11.3 61 272-332 50-110 (126)
217 KOG4809 Rab6 GTPase-interactin 78.8 1.5E+02 0.0032 35.2 28.9 27 545-571 532-558 (654)
218 PF04111 APG6: Autophagy prote 78.7 45 0.00098 36.6 14.1 61 343-404 71-131 (314)
219 PRK10246 exonuclease subunit S 78.6 2E+02 0.0044 36.7 43.4 23 546-568 827-849 (1047)
220 PRK11281 hypothetical protein; 78.5 2.1E+02 0.0046 36.9 44.5 25 307-331 124-148 (1113)
221 PF10146 zf-C4H2: Zinc finger- 78.3 68 0.0015 33.9 14.7 7 277-283 16-22 (230)
222 PF04012 PspA_IM30: PspA/IM30 77.9 86 0.0019 32.1 20.6 43 435-477 101-143 (221)
223 TIGR00618 sbcc exonuclease Sbc 77.9 2.1E+02 0.0045 36.4 46.0 26 555-580 549-574 (1042)
224 PF15254 CCDC14: Coiled-coil d 77.8 1.8E+02 0.004 35.8 20.7 29 358-386 495-523 (861)
225 TIGR00634 recN DNA repair prot 77.7 1.5E+02 0.0033 34.8 22.9 15 515-529 325-339 (563)
226 PF03148 Tektin: Tektin family 77.4 1.3E+02 0.0028 33.9 29.9 107 353-463 247-362 (384)
227 PF09789 DUF2353: Uncharacteri 77.3 1.2E+02 0.0027 33.6 23.9 32 449-480 136-167 (319)
228 PF15294 Leu_zip: Leucine zipp 77.2 1.1E+02 0.0024 33.4 16.0 23 275-297 131-153 (278)
229 COG1842 PspA Phage shock prote 77.2 1E+02 0.0022 32.5 27.8 95 306-401 47-142 (225)
230 KOG2129 Uncharacterized conser 76.9 1.5E+02 0.0032 34.2 26.0 41 257-297 59-99 (552)
231 COG5185 HEC1 Protein involved 76.9 1.6E+02 0.0034 34.5 36.4 51 429-479 459-513 (622)
232 PF08826 DMPK_coil: DMPK coile 76.6 27 0.00059 29.6 9.1 58 256-324 2-59 (61)
233 PF15066 CAGE1: Cancer-associa 76.2 1.6E+02 0.0035 34.3 26.7 22 161-182 195-216 (527)
234 KOG0804 Cytoplasmic Zn-finger 75.8 1.6E+02 0.0034 34.2 17.3 45 358-403 348-392 (493)
235 KOG4593 Mitotic checkpoint pro 75.5 2E+02 0.0043 35.0 37.6 23 360-382 115-137 (716)
236 PF15450 DUF4631: Domain of un 75.0 1.8E+02 0.0039 34.3 39.0 81 274-360 169-250 (531)
237 PF04012 PspA_IM30: PspA/IM30 74.6 1.1E+02 0.0023 31.4 26.2 101 286-386 26-127 (221)
238 PF04582 Reo_sigmaC: Reovirus 74.4 4.9 0.00011 44.2 5.2 52 347-399 102-153 (326)
239 PF10498 IFT57: Intra-flagella 74.4 1.3E+02 0.0029 33.8 16.4 38 355-392 232-269 (359)
240 PF06120 Phage_HK97_TLTM: Tail 73.0 1.5E+02 0.0033 32.6 16.3 50 242-297 46-95 (301)
241 PRK12704 phosphodiesterase; Pr 72.8 2E+02 0.0044 33.9 24.1 41 342-382 109-149 (520)
242 TIGR00618 sbcc exonuclease Sbc 72.4 2.8E+02 0.006 35.3 43.1 22 278-299 182-203 (1042)
243 PF05384 DegS: Sensor protein 72.0 1.1E+02 0.0024 30.6 19.7 108 278-386 29-141 (159)
244 PF06785 UPF0242: Uncharacteri 71.6 1.8E+02 0.0038 32.7 20.9 44 431-474 186-229 (401)
245 PRK10361 DNA recombination pro 71.3 2.1E+02 0.0046 33.5 24.4 30 563-592 381-410 (475)
246 PF14197 Cep57_CLD_2: Centroso 71.2 59 0.0013 28.1 10.1 62 295-360 3-64 (69)
247 KOG0804 Cytoplasmic Zn-finger 69.9 2.2E+02 0.0048 33.1 16.9 16 150-165 133-148 (493)
248 PF10234 Cluap1: Clusterin-ass 69.8 1.7E+02 0.0037 31.7 16.6 71 410-480 147-217 (267)
249 PF15035 Rootletin: Ciliary ro 69.5 1.4E+02 0.003 30.5 21.1 27 273-299 13-39 (182)
250 PF09486 HrpB7: Bacterial type 68.3 1.4E+02 0.0029 30.0 14.5 58 229-286 7-64 (158)
251 KOG1103 Predicted coiled-coil 68.2 2.1E+02 0.0046 32.2 23.7 18 452-469 244-261 (561)
252 PF10186 Atg14: UV radiation r 68.2 1.6E+02 0.0035 30.8 21.7 26 312-337 21-46 (302)
253 KOG4403 Cell surface glycoprot 67.4 2.4E+02 0.0053 32.6 21.4 55 507-561 356-417 (575)
254 TIGR02231 conserved hypothetic 67.1 51 0.0011 38.3 11.7 7 291-297 79-85 (525)
255 PF10212 TTKRSYEDQ: Predicted 67.0 1.3E+02 0.0027 35.6 14.5 97 249-363 418-514 (518)
256 PF06705 SF-assemblin: SF-asse 66.8 1.7E+02 0.0037 30.7 31.6 51 358-408 93-143 (247)
257 PF10267 Tmemb_cc2: Predicted 66.8 2.4E+02 0.0052 32.3 17.6 49 351-403 245-293 (395)
258 PF14197 Cep57_CLD_2: Centroso 66.6 76 0.0016 27.5 9.8 40 343-382 5-44 (69)
259 PLN02939 transferase, transfer 66.6 3.6E+02 0.0079 34.4 30.9 10 153-162 72-81 (977)
260 PF07058 Myosin_HC-like: Myosi 66.4 1.9E+02 0.0042 32.0 14.8 14 517-530 120-133 (351)
261 PF04871 Uso1_p115_C: Uso1 / p 65.9 1.3E+02 0.0029 29.1 14.6 25 343-367 84-108 (136)
262 PRK10698 phage shock protein P 65.6 1.8E+02 0.0039 30.4 25.0 58 286-343 27-84 (222)
263 PF02841 GBP_C: Guanylate-bind 65.3 2E+02 0.0044 31.0 15.8 58 267-324 199-256 (297)
264 PF12777 MT: Microtubule-bindi 64.9 2.3E+02 0.0049 31.4 21.8 44 544-587 266-309 (344)
265 PF07106 TBPIP: Tat binding pr 64.7 70 0.0015 31.5 10.6 49 515-569 89-137 (169)
266 PRK06975 bifunctional uroporph 64.6 3.2E+02 0.007 33.1 18.4 57 347-406 382-438 (656)
267 KOG0978 E3 ubiquitin ligase in 64.5 3.4E+02 0.0074 33.3 43.2 42 543-584 561-602 (698)
268 KOG0288 WD40 repeat protein Ti 64.5 2.7E+02 0.0059 32.1 16.6 60 419-478 14-73 (459)
269 COG4026 Uncharacterized protei 64.1 1.6E+02 0.0034 31.3 13.2 42 436-477 139-180 (290)
270 PF15290 Syntaphilin: Golgi-lo 63.9 1.9E+02 0.0042 31.6 14.1 25 267-291 63-87 (305)
271 PF06008 Laminin_I: Laminin Do 63.8 2E+02 0.0044 30.4 31.8 46 428-475 123-168 (264)
272 PF08826 DMPK_coil: DMPK coile 63.5 94 0.002 26.5 9.7 10 316-325 2-11 (61)
273 PF15290 Syntaphilin: Golgi-lo 63.5 2.2E+02 0.0048 31.2 14.4 41 293-333 64-104 (305)
274 COG4026 Uncharacterized protei 63.4 66 0.0014 34.1 10.3 67 446-529 135-201 (290)
275 PF14257 DUF4349: Domain of un 62.9 1.6E+02 0.0034 31.1 13.5 19 561-579 168-186 (262)
276 PF09304 Cortex-I_coil: Cortex 62.3 1.4E+02 0.0031 28.2 14.8 34 289-322 36-69 (107)
277 PF14988 DUF4515: Domain of un 62.3 2E+02 0.0043 29.9 26.5 22 449-470 180-201 (206)
278 KOG1899 LAR transmembrane tyro 62.2 3.4E+02 0.0075 32.9 16.7 34 436-469 228-261 (861)
279 PF03915 AIP3: Actin interacti 62.1 3E+02 0.0065 31.8 16.6 78 420-507 208-291 (424)
280 TIGR00634 recN DNA repair prot 62.1 3.2E+02 0.007 32.2 26.7 10 629-638 443-452 (563)
281 KOG4603 TBP-1 interacting prot 61.9 65 0.0014 32.8 9.6 40 283-322 79-118 (201)
282 PF07106 TBPIP: Tat binding pr 61.7 49 0.0011 32.7 8.9 11 390-400 120-130 (169)
283 KOG0993 Rab5 GTPase effector R 59.8 3.2E+02 0.007 31.5 31.8 40 543-582 415-454 (542)
284 KOG0979 Structural maintenance 59.8 4.7E+02 0.01 33.4 30.2 151 270-425 189-357 (1072)
285 COG1340 Uncharacterized archae 59.7 2.8E+02 0.006 30.6 33.8 22 441-462 167-188 (294)
286 KOG2991 Splicing regulator [RN 59.1 2.7E+02 0.0058 30.3 24.6 26 150-175 26-51 (330)
287 KOG4807 F-actin binding protei 58.8 3.3E+02 0.0072 31.2 28.6 24 309-332 350-373 (593)
288 TIGR02977 phageshock_pspA phag 58.7 2.3E+02 0.0049 29.3 25.7 31 312-342 53-83 (219)
289 PF02403 Seryl_tRNA_N: Seryl-t 58.6 81 0.0018 28.7 9.2 67 309-376 34-100 (108)
290 TIGR03319 YmdA_YtgF conserved 58.4 3.7E+02 0.008 31.7 24.0 7 395-401 154-160 (514)
291 PF04799 Fzo_mitofusin: fzo-li 58.0 63 0.0014 32.8 8.9 66 248-327 102-167 (171)
292 PF06005 DUF904: Protein of un 57.7 1.3E+02 0.0028 26.3 11.1 21 366-386 41-61 (72)
293 KOG2077 JNK/SAPK-associated pr 57.5 2E+02 0.0042 34.5 13.6 14 235-248 260-273 (832)
294 PF08172 CASP_C: CASP C termin 57.2 1.6E+02 0.0035 31.5 12.3 31 356-386 85-115 (248)
295 KOG0239 Kinesin (KAR3 subfamil 57.2 3.3E+02 0.0072 33.2 16.3 132 248-380 179-316 (670)
296 PF10234 Cluap1: Clusterin-ass 57.0 2.9E+02 0.0063 30.0 15.5 95 390-485 114-215 (267)
297 PF04102 SlyX: SlyX; InterPro 57.0 50 0.0011 28.3 7.0 49 281-329 2-50 (69)
298 KOG0979 Structural maintenance 55.5 5.5E+02 0.012 32.8 32.9 40 549-588 871-914 (1072)
299 PRK09841 cryptic autophosphory 55.2 4.7E+02 0.01 31.9 24.4 30 559-588 367-396 (726)
300 KOG4403 Cell surface glycoprot 54.7 4E+02 0.0087 31.0 17.5 60 342-404 245-304 (575)
301 PF14992 TMCO5: TMCO5 family 54.3 3.3E+02 0.0071 29.8 14.2 81 347-445 8-97 (280)
302 smart00806 AIP3 Actin interact 54.2 4E+02 0.0087 30.8 23.6 18 388-405 157-174 (426)
303 PRK00106 hypothetical protein; 54.0 4.5E+02 0.0097 31.3 24.2 8 650-657 402-409 (535)
304 PF08232 Striatin: Striatin fa 53.7 39 0.00085 32.6 6.5 49 282-330 24-72 (134)
305 PRK10803 tol-pal system protei 53.4 81 0.0018 33.7 9.5 58 419-476 41-98 (263)
306 PRK10361 DNA recombination pro 53.4 4.4E+02 0.0094 31.0 25.3 17 421-437 102-118 (475)
307 PF09744 Jnk-SapK_ap_N: JNK_SA 53.3 2.5E+02 0.0054 28.1 15.9 58 308-379 54-111 (158)
308 PRK02119 hypothetical protein; 53.3 77 0.0017 27.7 7.6 45 281-325 7-51 (73)
309 TIGR01010 BexC_CtrB_KpsE polys 53.2 3.5E+02 0.0075 29.8 17.3 54 350-403 170-231 (362)
310 PF02994 Transposase_22: L1 tr 52.8 44 0.00095 37.5 7.6 32 355-386 142-173 (370)
311 PF11365 DUF3166: Protein of u 52.8 37 0.00079 31.4 5.8 37 346-382 4-40 (96)
312 PRK02793 phi X174 lysis protei 52.6 81 0.0018 27.4 7.6 45 281-325 6-50 (72)
313 PRK00295 hypothetical protein; 52.6 95 0.0021 26.7 8.0 44 281-324 3-46 (68)
314 PF15175 SPATA24: Spermatogene 51.0 2.3E+02 0.005 28.3 11.1 65 396-460 6-84 (153)
315 KOG4571 Activating transcripti 50.8 73 0.0016 34.8 8.5 42 341-382 246-287 (294)
316 PRK15422 septal ring assembly 50.7 1.8E+02 0.004 26.1 9.5 28 560-587 51-78 (79)
317 KOG4302 Microtubule-associated 50.0 5.6E+02 0.012 31.3 18.1 137 439-578 54-197 (660)
318 PRK09841 cryptic autophosphory 50.0 5.6E+02 0.012 31.3 18.2 23 90-112 85-108 (726)
319 PF00901 Orbi_VP5: Orbivirus o 49.8 5E+02 0.011 30.6 20.2 80 341-423 138-217 (508)
320 PRK04406 hypothetical protein; 49.6 93 0.002 27.3 7.6 44 281-324 9-52 (75)
321 PF09731 Mitofilin: Mitochondr 49.1 5.1E+02 0.011 30.5 23.9 14 396-409 363-376 (582)
322 PF10046 BLOC1_2: Biogenesis o 49.1 2.1E+02 0.0046 26.1 12.8 83 282-365 13-95 (99)
323 PF15450 DUF4631: Domain of un 48.8 5.3E+02 0.011 30.6 45.6 83 315-398 110-212 (531)
324 PRK00736 hypothetical protein; 47.3 1.2E+02 0.0025 26.2 7.7 44 282-325 4-47 (68)
325 PF09738 DUF2051: Double stran 46.9 2.6E+02 0.0057 30.8 12.2 22 507-528 278-299 (302)
326 PF12777 MT: Microtubule-bindi 46.9 98 0.0021 34.2 9.1 13 51-63 77-89 (344)
327 TIGR01069 mutS2 MutS2 family p 46.0 6.8E+02 0.015 31.1 16.8 24 125-148 248-271 (771)
328 PLN03188 kinesin-12 family pro 45.9 8.4E+02 0.018 32.1 26.3 21 513-533 1219-1239(1320)
329 PF05700 BCAS2: Breast carcino 45.9 3.7E+02 0.008 28.0 12.8 87 288-381 134-220 (221)
330 PRK04325 hypothetical protein; 45.8 1.2E+02 0.0026 26.5 7.6 45 280-324 6-50 (74)
331 KOG0972 Huntingtin interacting 44.9 4.8E+02 0.01 29.0 16.8 61 277-337 246-306 (384)
332 TIGR02977 phageshock_pspA phag 44.8 3.7E+02 0.0081 27.8 26.2 23 358-380 39-61 (219)
333 TIGR03752 conj_TIGR03752 integ 44.2 2.5E+02 0.0055 32.8 11.9 44 343-386 59-102 (472)
334 PRK00409 recombination and DNA 43.9 7.3E+02 0.016 30.8 17.3 24 125-148 253-276 (782)
335 PRK10803 tol-pal system protei 43.2 1.4E+02 0.0031 31.8 9.4 37 347-383 58-94 (263)
336 PF09727 CortBP2: Cortactin-bi 42.9 4.1E+02 0.0088 27.6 16.3 95 288-382 79-173 (192)
337 TIGR01069 mutS2 MutS2 family p 42.7 5.9E+02 0.013 31.6 15.6 6 652-657 743-748 (771)
338 TIGR02338 gimC_beta prefoldin, 42.6 2.8E+02 0.006 25.6 13.1 33 341-373 72-104 (110)
339 PF10226 DUF2216: Uncharacteri 42.5 4.1E+02 0.009 27.6 12.8 94 253-378 43-136 (195)
340 PRK00846 hypothetical protein; 41.9 2.3E+02 0.0049 25.3 8.8 10 288-297 11-20 (77)
341 KOG2264 Exostosin EXT1L [Signa 41.9 1.8E+02 0.0038 34.8 10.2 40 544-583 110-149 (907)
342 PF06008 Laminin_I: Laminin Do 41.8 4.5E+02 0.0097 27.8 29.0 56 257-312 54-109 (264)
343 PF13747 DUF4164: Domain of un 41.7 2.7E+02 0.0058 25.2 11.5 40 341-380 37-76 (89)
344 PRK10698 phage shock protein P 41.6 4.3E+02 0.0094 27.6 26.6 47 432-478 99-145 (222)
345 PF06632 XRCC4: DNA double-str 41.1 4.5E+02 0.0097 29.5 13.0 69 280-358 141-209 (342)
346 KOG4572 Predicted DNA-binding 40.4 8.6E+02 0.019 30.7 24.9 42 338-379 924-965 (1424)
347 KOG0837 Transcriptional activa 40.2 1.6E+02 0.0034 31.9 8.9 62 275-337 206-267 (279)
348 KOG1962 B-cell receptor-associ 40.2 2.3E+02 0.005 29.9 10.0 17 309-325 112-128 (216)
349 PF04582 Reo_sigmaC: Reovirus 40.0 58 0.0013 36.2 5.9 12 283-294 35-46 (326)
350 PF05266 DUF724: Protein of un 40.0 4.3E+02 0.0094 27.1 13.7 24 342-365 158-181 (190)
351 PF06156 DUF972: Protein of un 39.8 1.2E+02 0.0027 28.4 7.3 46 544-589 11-56 (107)
352 PF11172 DUF2959: Protein of u 39.7 4.7E+02 0.01 27.4 19.5 120 459-584 63-185 (201)
353 TIGR03752 conj_TIGR03752 integ 39.5 3.6E+02 0.0078 31.6 12.2 37 350-386 59-95 (472)
354 PF06770 Arif-1: Actin-rearran 39.4 33 0.00072 35.4 3.8 29 652-680 164-192 (196)
355 PF02994 Transposase_22: L1 tr 39.4 94 0.002 34.9 7.6 38 345-382 146-183 (370)
356 PRK11519 tyrosine kinase; Prov 39.4 7.9E+02 0.017 30.0 22.2 22 91-112 86-108 (719)
357 PF12329 TMF_DNA_bd: TATA elem 39.0 2.6E+02 0.0057 24.3 10.1 22 511-532 4-25 (74)
358 PF06428 Sec2p: GDP/GTP exchan 38.9 51 0.0011 30.6 4.5 79 301-382 5-83 (100)
359 PRK09343 prefoldin subunit bet 38.5 3.5E+02 0.0076 25.6 14.0 30 347-376 82-111 (121)
360 PF05278 PEARLI-4: Arabidopsis 38.3 5E+02 0.011 28.3 12.4 8 395-402 168-175 (269)
361 KOG1937 Uncharacterized conser 38.3 7.2E+02 0.016 29.2 28.9 26 277-302 280-305 (521)
362 smart00338 BRLZ basic region l 38.1 1.3E+02 0.0028 25.0 6.6 40 341-380 24-63 (65)
363 PRK00846 hypothetical protein; 38.0 2.7E+02 0.0059 24.8 8.7 48 280-327 10-57 (77)
364 PF11802 CENP-K: Centromere-as 37.6 5.8E+02 0.012 27.9 17.4 39 251-289 30-69 (268)
365 TIGR00414 serS seryl-tRNA synt 37.3 2.6E+02 0.0055 32.0 10.8 74 307-380 33-106 (418)
366 KOG3457 Sec61 protein transloc 37.2 25 0.00055 31.8 2.2 17 661-677 68-84 (88)
367 PF12761 End3: Actin cytoskele 37.2 2.7E+02 0.0059 28.9 9.8 33 493-525 162-194 (195)
368 PRK00409 recombination and DNA 37.1 9.1E+02 0.02 30.0 17.4 6 652-657 754-759 (782)
369 KOG4603 TBP-1 interacting prot 37.1 2.4E+02 0.0052 28.9 9.1 58 343-401 79-138 (201)
370 PF05529 Bap31: B-cell recepto 37.0 1.7E+02 0.0038 29.3 8.5 37 549-585 155-191 (192)
371 KOG2264 Exostosin EXT1L [Signa 36.9 1.4E+02 0.0031 35.5 8.6 44 340-383 90-133 (907)
372 PRK04406 hypothetical protein; 36.8 2.9E+02 0.0062 24.3 8.6 44 287-330 8-51 (75)
373 PF04304 DUF454: Protein of un 36.8 73 0.0016 26.9 4.9 46 630-675 23-69 (71)
374 PF02403 Seryl_tRNA_N: Seryl-t 36.5 2.4E+02 0.0053 25.5 8.6 33 543-575 69-101 (108)
375 PF07099 DUF1361: Protein of u 36.5 63 0.0014 32.3 5.1 49 633-681 107-162 (168)
376 KOG4460 Nuclear pore complex, 36.1 5E+02 0.011 31.1 12.6 125 270-395 597-721 (741)
377 PF12004 DUF3498: Domain of un 36.0 12 0.00026 43.5 0.0 43 333-375 423-465 (495)
378 PF11180 DUF2968: Protein of u 35.8 5.2E+02 0.011 26.8 13.7 75 285-370 107-181 (192)
379 PRK13169 DNA replication intia 35.6 1.6E+02 0.0034 27.9 7.3 45 544-588 11-55 (110)
380 KOG4421 Uncharacterized conser 35.5 1.2E+02 0.0026 34.3 7.4 71 512-590 15-85 (637)
381 PF04912 Dynamitin: Dynamitin 35.1 6.9E+02 0.015 28.1 23.2 11 417-427 215-225 (388)
382 PF08232 Striatin: Striatin fa 35.1 4E+02 0.0086 25.8 10.2 46 351-397 19-64 (134)
383 PRK10476 multidrug resistance 34.7 6.3E+02 0.014 27.5 17.6 24 307-330 82-105 (346)
384 PF14932 HAUS-augmin3: HAUS au 34.6 5.9E+02 0.013 27.1 13.0 114 242-359 38-151 (256)
385 COG4477 EzrA Negative regulato 34.4 8.8E+02 0.019 29.0 36.9 23 276-298 164-186 (570)
386 PF09753 Use1: Membrane fusion 34.3 87 0.0019 33.0 6.1 21 562-582 163-183 (251)
387 PF05529 Bap31: B-cell recepto 34.3 4.2E+02 0.0091 26.6 10.7 21 311-331 118-138 (192)
388 COG4467 Regulator of replicati 34.2 1.4E+02 0.0031 28.3 6.5 44 544-587 11-54 (114)
389 PF13870 DUF4201: Domain of un 34.2 4.8E+02 0.01 25.9 22.1 65 336-401 56-120 (177)
390 KOG2629 Peroxisomal membrane a 34.1 4.1E+02 0.009 29.3 11.0 71 294-378 119-189 (300)
391 KOG1850 Myosin-like coiled-coi 34.1 7.2E+02 0.016 28.0 40.9 59 252-311 36-94 (391)
392 COG3206 GumC Uncharacterized p 33.2 7.8E+02 0.017 28.1 24.4 21 87-107 77-97 (458)
393 PF12004 DUF3498: Domain of un 33.1 14 0.00031 42.9 0.0 81 271-358 396-480 (495)
394 PF10805 DUF2730: Protein of u 33.0 3.6E+02 0.0077 25.0 9.2 32 551-582 68-99 (106)
395 PF02185 HR1: Hr1 repeat; Int 33.0 2.7E+02 0.0059 23.5 7.8 58 312-370 2-60 (70)
396 KOG2391 Vacuolar sorting prote 32.9 3.5E+02 0.0075 30.5 10.3 53 323-375 233-285 (365)
397 cd00632 Prefoldin_beta Prefold 32.7 3.9E+02 0.0084 24.4 13.8 40 341-380 61-100 (105)
398 KOG3091 Nuclear pore complex, 32.5 4.1E+02 0.0088 31.3 11.2 104 449-557 337-444 (508)
399 KOG0163 Myosin class VI heavy 32.3 1.1E+03 0.024 29.6 16.8 126 248-390 893-1019(1259)
400 PF06632 XRCC4: DNA double-str 32.3 7.2E+02 0.016 27.9 12.9 57 348-404 149-205 (342)
401 KOG2991 Splicing regulator [RN 32.2 7E+02 0.015 27.2 23.9 65 510-582 234-298 (330)
402 PF08409 DUF1736: Domain of un 32.1 48 0.001 29.6 3.1 25 656-680 21-45 (80)
403 PF11365 DUF3166: Protein of u 31.9 1.5E+02 0.0032 27.5 6.3 42 435-476 4-45 (96)
404 PF06428 Sec2p: GDP/GTP exchan 31.9 87 0.0019 29.1 4.9 77 320-401 3-80 (100)
405 PF07246 Phlebovirus_NSM: Phle 31.6 7E+02 0.015 27.2 12.1 39 345-383 204-242 (264)
406 PF10458 Val_tRNA-synt_C: Valy 31.5 2.9E+02 0.0064 23.2 7.7 47 356-402 3-62 (66)
407 PF15035 Rootletin: Ciliary ro 31.5 5.8E+02 0.013 26.0 19.0 36 285-320 4-39 (182)
408 PLN02678 seryl-tRNA synthetase 31.0 3.5E+02 0.0076 31.4 10.6 71 309-380 38-108 (448)
409 KOG4572 Predicted DNA-binding 30.9 1.2E+03 0.026 29.5 19.9 45 353-397 998-1042(1424)
410 cd00089 HR1 Protein kinase C-r 30.9 2.9E+02 0.0063 23.5 7.7 66 306-377 4-69 (72)
411 PF08647 BRE1: BRE1 E3 ubiquit 30.5 4.2E+02 0.009 24.1 13.0 7 313-319 33-39 (96)
412 PF07851 TMPIT: TMPIT-like pro 30.3 5.8E+02 0.012 28.6 11.6 11 667-677 269-279 (330)
413 PRK05431 seryl-tRNA synthetase 30.0 3.7E+02 0.0079 30.8 10.5 72 308-380 32-103 (425)
414 PF04100 Vps53_N: Vps53-like, 29.9 8.6E+02 0.019 27.5 19.7 79 304-382 25-106 (383)
415 cd00632 Prefoldin_beta Prefold 29.6 4.3E+02 0.0094 24.0 12.1 23 279-301 9-31 (105)
416 TIGR02971 heterocyst_DevB ABC 29.6 7.3E+02 0.016 26.6 20.0 28 348-375 95-122 (327)
417 PLN02320 seryl-tRNA synthetase 29.5 3.4E+02 0.0074 32.1 10.2 67 312-380 101-167 (502)
418 PF12329 TMF_DNA_bd: TATA elem 29.2 3.9E+02 0.0084 23.3 10.6 28 359-386 35-62 (74)
419 KOG0962 DNA repair protein RAD 29.2 1.5E+03 0.032 30.1 40.3 48 431-478 884-931 (1294)
420 PF12761 End3: Actin cytoskele 29.1 6.6E+02 0.014 26.2 11.0 22 277-298 97-118 (195)
421 PF06120 Phage_HK97_TLTM: Tail 29.0 8.3E+02 0.018 27.1 17.3 49 274-322 57-106 (301)
422 TIGR03794 NHPM_micro_HlyD NHPM 29.0 8.7E+02 0.019 27.3 21.2 23 455-477 229-251 (421)
423 PF08581 Tup_N: Tup N-terminal 28.9 4.2E+02 0.0091 23.6 11.2 7 393-399 64-70 (79)
424 COG1382 GimC Prefoldin, chaper 28.9 5.3E+02 0.012 24.8 13.7 40 341-380 68-107 (119)
425 PRK13729 conjugal transfer pil 28.5 2.2E+02 0.0047 33.3 8.3 46 356-402 75-120 (475)
426 PF02183 HALZ: Homeobox associ 28.5 2.3E+02 0.0051 22.6 6.1 19 316-334 3-21 (45)
427 PF05546 She9_MDM33: She9 / Md 28.3 7.2E+02 0.016 26.2 17.4 122 430-589 7-141 (207)
428 TIGR02449 conserved hypothetic 28.1 4E+02 0.0086 23.1 8.9 33 348-380 12-44 (65)
429 TIGR02894 DNA_bind_RsfA transc 28.0 3.3E+02 0.0071 27.5 8.4 48 285-332 99-146 (161)
430 PF04728 LPP: Lipoprotein leuc 27.8 3.4E+02 0.0075 22.9 7.2 40 342-381 9-48 (56)
431 PF14282 FlxA: FlxA-like prote 27.7 3.9E+02 0.0085 24.7 8.5 28 558-585 47-74 (106)
432 PF04728 LPP: Lipoprotein leuc 27.6 3.8E+02 0.0082 22.6 7.4 43 546-588 8-50 (56)
433 PF09763 Sec3_C: Exocyst compl 27.5 1.2E+03 0.025 28.4 17.2 51 431-481 29-79 (701)
434 KOG0993 Rab5 GTPase effector R 27.4 1E+03 0.022 27.7 25.2 47 419-465 442-488 (542)
435 KOG3850 Predicted membrane pro 27.3 1E+03 0.022 27.5 17.9 14 166-179 219-232 (455)
436 PF04880 NUDE_C: NUDE protein, 26.3 92 0.002 31.5 4.3 22 434-455 2-23 (166)
437 PF00170 bZIP_1: bZIP transcri 26.3 3.8E+02 0.0082 22.2 9.6 38 341-378 24-61 (64)
438 COG1730 GIM5 Predicted prefold 26.2 6.5E+02 0.014 24.9 13.8 42 359-401 96-137 (145)
439 PRK00753 psbL photosystem II r 26.0 69 0.0015 24.9 2.5 16 665-680 19-34 (39)
440 PF05791 Bacillus_HBL: Bacillu 25.9 6.1E+02 0.013 25.6 10.2 18 222-239 45-62 (184)
441 PF05663 DUF809: Protein of un 25.9 59 0.0013 30.3 2.7 18 659-676 25-42 (138)
442 COG0172 SerS Seryl-tRNA synthe 25.8 4.6E+02 0.0099 30.4 10.2 74 309-382 34-107 (429)
443 PF07798 DUF1640: Protein of u 25.7 6.8E+02 0.015 25.0 16.7 108 272-402 47-154 (177)
444 PF04799 Fzo_mitofusin: fzo-li 25.6 4.5E+02 0.0098 26.8 9.0 26 353-378 140-165 (171)
445 TIGR00998 8a0101 efflux pump m 25.1 8.6E+02 0.019 26.0 17.9 28 349-376 107-134 (334)
446 PF10191 COG7: Golgi complex c 25.1 1.4E+03 0.03 28.4 20.5 55 455-509 72-126 (766)
447 TIGR03495 phage_LysB phage lys 25.0 4.1E+02 0.0089 26.0 8.3 73 246-318 21-96 (135)
448 PF12808 Mto2_bdg: Micro-tubul 24.9 1.8E+02 0.0039 24.1 5.0 39 311-349 4-42 (52)
449 PF07439 DUF1515: Protein of u 24.8 5.7E+02 0.012 24.4 8.8 16 313-328 10-25 (112)
450 PF15294 Leu_zip: Leucine zipp 24.7 9.5E+02 0.021 26.3 24.8 22 459-480 214-235 (278)
451 COG3074 Uncharacterized protei 24.6 5E+02 0.011 23.0 10.4 44 343-386 25-68 (79)
452 PRK15178 Vi polysaccharide exp 24.4 1.2E+03 0.025 27.2 19.1 43 359-402 288-337 (434)
453 COG4985 ABC-type phosphate tra 24.4 9.2E+02 0.02 26.0 11.3 45 436-480 161-206 (289)
454 PF13094 CENP-Q: CENP-Q, a CEN 24.3 6.3E+02 0.014 24.6 9.8 15 388-402 64-78 (160)
455 KOG0860 Synaptobrevin/VAMP-lik 24.2 2.3E+02 0.005 27.2 6.2 52 629-681 63-114 (116)
456 TIGR02449 conserved hypothetic 24.1 4.8E+02 0.01 22.6 9.0 38 295-332 5-42 (65)
457 PF13094 CENP-Q: CENP-Q, a CEN 24.0 5.9E+02 0.013 24.8 9.5 6 292-297 29-34 (160)
458 PF12795 MscS_porin: Mechanose 23.9 8.4E+02 0.018 25.4 22.9 178 280-461 35-229 (240)
459 PF06716 DUF1201: Protein of u 23.8 96 0.0021 25.2 3.1 25 661-685 17-43 (54)
460 PF02841 GBP_C: Guanylate-bind 23.7 9.4E+02 0.02 25.9 17.0 14 273-286 127-140 (297)
461 TIGR03545 conserved hypothetic 23.7 1.3E+03 0.028 27.7 13.7 53 352-404 221-273 (555)
462 KOG1962 B-cell receptor-associ 23.6 8.9E+02 0.019 25.6 14.6 46 340-385 162-207 (216)
463 PRK02793 phi X174 lysis protei 23.4 4.9E+02 0.011 22.6 8.1 24 290-313 8-31 (72)
464 PF07989 Microtub_assoc: Micro 23.3 5.2E+02 0.011 22.7 9.0 44 343-386 14-58 (75)
465 PF01920 Prefoldin_2: Prefoldi 23.0 5.3E+02 0.011 22.8 11.9 36 345-380 64-99 (106)
466 PF12072 DUF3552: Domain of un 22.9 8.3E+02 0.018 25.0 22.5 12 394-405 155-166 (201)
467 PF03962 Mnd1: Mnd1 family; I 22.9 8.2E+02 0.018 24.9 13.4 20 354-373 73-92 (188)
468 PTZ00464 SNF-7-like protein; P 22.7 8.9E+02 0.019 25.3 15.9 20 278-297 20-39 (211)
469 PF07058 Myosin_HC-like: Myosi 22.7 1.1E+03 0.024 26.4 19.1 21 345-365 68-88 (351)
470 PF03915 AIP3: Actin interacti 22.5 1.2E+03 0.027 26.9 18.4 25 312-336 152-176 (424)
471 PF14389 Lzipper-MIP1: Leucine 22.5 3E+02 0.0065 24.8 6.5 66 305-370 9-81 (88)
472 TIGR03545 conserved hypothetic 22.4 1.4E+03 0.03 27.4 13.9 18 631-648 475-492 (555)
473 COG4477 EzrA Negative regulato 22.2 1.4E+03 0.031 27.4 37.4 37 496-532 328-367 (570)
474 PF07851 TMPIT: TMPIT-like pro 22.2 8.6E+02 0.019 27.3 11.2 28 345-372 6-33 (330)
475 PF06387 Calcyon: D1 dopamine 22.1 54 0.0012 33.4 1.8 33 653-685 79-113 (186)
476 PF02419 PsbL: PsbL protein; 22.1 96 0.0021 23.9 2.7 16 665-680 17-32 (37)
477 PRK03947 prefoldin subunit alp 22.0 6.9E+02 0.015 23.7 14.0 94 296-394 5-137 (140)
478 PRK08476 F0F1 ATP synthase sub 21.8 7.3E+02 0.016 23.9 14.7 20 543-562 120-139 (141)
479 PRK10869 recombination and rep 21.7 1.4E+03 0.03 27.1 28.1 231 307-553 143-386 (553)
480 PF13863 DUF4200: Domain of un 21.6 6.4E+02 0.014 23.2 14.6 101 385-485 6-106 (126)
481 PF06156 DUF972: Protein of un 21.6 4.7E+02 0.01 24.6 7.7 49 343-392 8-56 (107)
482 PRK09343 prefoldin subunit bet 21.6 6.9E+02 0.015 23.6 13.6 103 436-553 4-111 (121)
483 PF05103 DivIVA: DivIVA protei 21.3 51 0.0011 30.6 1.4 104 352-469 27-130 (131)
484 CHL00038 psbL photosystem II p 21.2 99 0.0022 23.9 2.6 16 665-680 18-33 (38)
485 PF10205 KLRAQ: Predicted coil 21.1 7E+02 0.015 23.5 10.7 66 309-374 3-71 (102)
486 PRK03947 prefoldin subunit alp 21.0 7.2E+02 0.016 23.6 14.0 94 282-379 5-137 (140)
487 KOG2302 T-type voltage-gated C 20.8 99 0.0022 39.1 3.9 33 646-678 176-223 (1956)
488 PF08647 BRE1: BRE1 E3 ubiquit 20.7 6.4E+02 0.014 22.9 13.6 95 281-386 1-95 (96)
489 PLN02678 seryl-tRNA synthetase 20.6 6E+02 0.013 29.6 9.9 76 498-578 33-108 (448)
490 PRK00295 hypothetical protein; 20.4 5.5E+02 0.012 22.0 8.0 49 288-336 3-51 (68)
491 PF15188 CCDC-167: Coiled-coil 20.4 5.7E+02 0.012 23.3 7.7 61 453-527 5-65 (85)
492 PRK10476 multidrug resistance 20.3 1.1E+03 0.024 25.6 17.8 118 306-439 81-201 (346)
493 PLN03221 rapid alkalinization 20.2 77 0.0017 30.8 2.3 24 654-677 6-29 (137)
494 TIGR03495 phage_LysB phage lys 20.1 8.4E+02 0.018 24.0 10.7 77 492-576 20-96 (135)
495 PRK11519 tyrosine kinase; Prov 20.0 1.6E+03 0.035 27.3 19.0 139 277-416 254-400 (719)
No 1
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=100.00 E-value=2e-32 Score=308.21 Aligned_cols=373 Identities=26% Similarity=0.338 Sum_probs=253.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 271 EARLARVCAGLSSRLQEYKSENAQLEELLVA--------------ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAE 336 (705)
Q Consensus 271 e~qLa~~~~RLrk~~~elks~~aqLEell~e--------------l~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~e 336 (705)
.+++++++++|.+..++++....+|+++-++ +....+.|.+++..|+.++......+......|..
T Consensus 108 ~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~ 187 (511)
T PF09787_consen 108 SSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLK 187 (511)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 4499999999999999999999999997111 11124888889999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHHHHHHH-H
Q 005259 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL----------TETRMIQALREELASVERRAEE-E 405 (705)
Q Consensus 337 alsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~----------~ekeilqSLE~eLkslq~~le~-E 405 (705)
+...++..+..|+.+.. +...+........+++...+.++..... ++..+++++++.|.+|+.+... .
T Consensus 188 rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~ 266 (511)
T PF09787_consen 188 RTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEG 266 (511)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence 99999999999999888 4456666666777776666665555544 3788999999999999984333 1
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCCh
Q 005259 406 RAAHNA-TKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP 484 (705)
Q Consensus 406 ~~aH~a-Tk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~ 484 (705)
...+.. ...+ .|..+..-+.+-+..++..+.+-+.++.+++.++ ..+.+.+++....+..........
T Consensus 267 ~~~~~~~~el~------~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~---~~~~~~~~~~~~~~~~~~~~~~~~-- 335 (511)
T PF09787_consen 267 FDSSTNSIELE------ELKQERDHLQEEIQLLERQIEQLRAELQDLEAQL---EGEQESFREQPQELSQQLEPELTT-- 335 (511)
T ss_pred cccccchhcch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHhch--
Confidence 221111 1111 1222222223333344444444444443333322 222333333333333333333322
Q ss_pred HHHH---HHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 005259 485 EEAN---QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ 561 (705)
Q Consensus 485 ~ea~---q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ 561 (705)
+++ ....+..+..++.+. ...+..++...+.|+++|+.++..-- +.....++|.|++.||+.|++||
T Consensus 336 -e~e~~l~~~el~~~~ee~~~~---~s~~~~k~~~ke~E~q~lr~~l~~~~------~~s~~~elE~rl~~lt~~Li~KQ 405 (511)
T PF09787_consen 336 -EAELRLYYQELYHYREELSRQ---KSPLQLKLKEKESEIQKLRNQLSARA------SSSSWNELESRLTQLTESLIQKQ 405 (511)
T ss_pred -HHHHHHHHHHHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHHHHh------ccCCcHhHHHHHhhccHHHHHHH
Confidence 111 111233344444322 23357788899999999999996522 12334799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC--CCCcccchhhhccccCCCCCCCcCccchhhhHHHHHHH
Q 005259 562 TQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRS--WSSWEEDAEMKSLENNGRPLPLHHRHIAGASVQLQKAA 639 (705)
Q Consensus 562 ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~~~~~sr~sr~~--~~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~vk~Aa 639 (705)
+++|.|.+||++|.+|||++...+++.. ...+.+... +..+.+|.... +. .+....+|.++++++|++||
T Consensus 406 ~~lE~l~~ek~al~lqlErl~~~l~~~~---~~~~~~~~~~~~~~~~~d~~~r-~~----~~~~~~~~d~~~~~r~~~a~ 477 (511)
T PF09787_consen 406 TQLESLGSEKNALRLQLERLETQLKEEA---SNNRPSSILMKYSNSEDDAESR-VP----LLMKDSPHDIGVARRVKRAA 477 (511)
T ss_pred HHHHHHHhhhhhccccHHHHHHHHHhhc---cCCCCchhhHhhccCCCchhhh-hh----hhccCCCccchHHHHHHHHH
Confidence 9999999999999999999999999721 112222221 22344444443 22 22233445568999999999
Q ss_pred hHhhhhhhhhhHhhhcchhHHHHHHHHHHHHHHH
Q 005259 640 KLLDSGAVRATRFLWRYPIARIILLFYLVFVHLF 673 (705)
Q Consensus 640 ~~lDs~slr~g~fLRRyP~ARl~vlvYmvlLHLW 673 (705)
++||+|+||+|+||||||++|+||||||++||||
T Consensus 478 ~~iD~~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW 511 (511)
T PF09787_consen 478 SVIDSFSIRLGIFLRRYPMARIFVIIYMALLHLW 511 (511)
T ss_pred HHHhHhhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999
No 2
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=99.98 E-value=4e-29 Score=267.99 Aligned_cols=375 Identities=17% Similarity=0.152 Sum_probs=240.4
Q ss_pred CCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259 245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (705)
Q Consensus 245 k~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ 324 (705)
+|+.....-+.+ ..+..++.-..|++|| ++||++..+.++.++..||.. .-...|++++.-+++.+.+.+
T Consensus 157 ~~a~d~~~s~~~--q~~d~~e~~~~kdSQl---kvrlqe~~~ll~~Rve~le~~-----Sal~~lq~~L~la~~~~~~~~ 226 (554)
T KOG4677|consen 157 SYAPDLGRSKGE--QYRDYSEDWSPKDSQL---KVRLQEVRRLLKGRVESLERF-----SALRSLQDKLQLAEEAVSMHD 226 (554)
T ss_pred hcccccccchhh--hHhhHhhhcccchhhH---HHHHHHHHHHHHhhhHHHHHH-----HHHHHHHHHHHHHHHHHHhhh
Confidence 444444333333 5677888889999999 999999999999999999996 345678889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--H---HHHhhh---HHHHHHHHHHHHHH
Q 005259 325 SEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES--I---MRNREL---TETRMIQALREELA 396 (705)
Q Consensus 325 ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~r--l---~e~l~~---~ekeilqSLE~eLk 396 (705)
+.+.++...|..++-.++.++.++.+-++-+...+-..|.++.+.+...+- + ++++.+ .+..|+++.++
T Consensus 227 e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~k--- 303 (554)
T KOG4677|consen 227 ENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDK--- 303 (554)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCc---
Confidence 999999999999999999999999999999999999999999998887655 2 233333 24555555443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHH
Q 005259 397 SVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ----QELQDM 472 (705)
Q Consensus 397 slq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLk----QeLq~l 472 (705)
+.--+.+.|... .+..+..+- ++-....+-.|+.++..+|+....+. ..+...
T Consensus 304 stas~~E~ee~r----------ve~~~s~ed-------------~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~ 360 (554)
T KOG4677|consen 304 STASRKEFEETR----------VELPFSAED-------------SAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRK 360 (554)
T ss_pred chhHHHHHHHHH----------hcccccHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHh
Confidence 111111111111 111111111 01111222333444333333222221 111111
Q ss_pred HHHHHHcccCChHHHHHHHHHHHHHHHHHHHHh----hhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHH
Q 005259 473 EARLKRGQKKSPEEANQAIQMQAWQDEVERARQ----GQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEK 548 (705)
Q Consensus 473 E~e~~r~qek~~~ea~q~~qL~~Lk~EL~~~rq----~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~ 548 (705)
..++.-...-...... .++.+.-|..-..+ ..-....+|-..+.++++|++++.. .| ..+ ....+++
T Consensus 361 h~~ka~~~~~~~~l~~---~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~---r~--~~~-s~~~l~~ 431 (554)
T KOG4677|consen 361 HPRKASILNMPLVLTL---FYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKL---RA--WND-SVDALFT 431 (554)
T ss_pred hhHhhhhhhchHHHHH---HHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHH---Hh--hhh-hHHHHhc
Confidence 1111111100000110 11222221111100 0112356778899999999998743 11 122 2467889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcccchhhhccccC--C--CCCCCc
Q 005259 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLENN--G--RPLPLH 624 (705)
Q Consensus 549 rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~~~~~sr~sr~~~~~~~~d~~~~~~~~~--~--~~~p~~ 624 (705)
+.+.||+.|++||.++|.+..+++.|.++||++....- .+.+.+++...|+ + +.+|..
T Consensus 432 ~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N------------------~~~~v~~~~~~n~~~~~~~~v~~l 493 (554)
T KOG4677|consen 432 TKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVN------------------LVEDVDTKLNLNTKFKCHDVVIDL 493 (554)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc------------------cccccceeeccCCCcccccccchH
Confidence 99999999999999999999999999999999875321 1111222221111 0 011111
Q ss_pred CccchhhhHHHHHHHhHhhhhhhhhhHhhhcchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005259 625 HRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQE 683 (705)
Q Consensus 625 ~~~~~~~~~~vk~Aa~~lDs~slr~g~fLRRyP~ARl~vlvYmvlLHLWVm~VL~~~~~ 683 (705)
-+.+-.+ .++++|++.||+|+++++.|||+||.||||+++||++|||||||||++|||
T Consensus 494 ~~d~~~~-~q~r~a~s~VD~~s~~l~~~lr~~psArif~~~YmallHLWvmivlLTYTP 551 (554)
T KOG4677|consen 494 YRDLKDR-QQLRAARSKVDKGSAELEKILRLLPSARIFWKNYMALLHLWVMIVLLTYTP 551 (554)
T ss_pred hhhhhhh-HHHHHHHhhcchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 1112233 799999999999999999999999999999999999999999999999999
No 3
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=99.50 E-value=9.3e-12 Score=147.61 Aligned_cols=319 Identities=15% Similarity=0.141 Sum_probs=241.8
Q ss_pred hhhcCCCCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259 239 ALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ 318 (705)
Q Consensus 239 ~~~~~ek~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQa 318 (705)
..-.++|.+++.++|++++..+++|++. +.+|++..+++.+++.++++..+.+.+++..|+.....|-.
T Consensus 534 ~~~~~~kv~~~rk~le~~~~d~~~e~~~-----------~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~ 602 (1317)
T KOG0612|consen 534 AADSLEKVNSLRKQLEEAELDMRAESED-----------AGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSK 602 (1317)
T ss_pred HHHHHhhHHHHHHHHHHhhhhhhhhHHH-----------HhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 3445789999999999999999999995 99999999999999999999999999999999987777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHH
Q 005259 319 ELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET-RMIQALREELAS 397 (705)
Q Consensus 319 eL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ek-eilqSLE~eLks 397 (705)
+...++........ ........+.+++.++..|+......+..+.+++...+..++.++++++ .+..-++.+++.
T Consensus 603 ~~~~~~~~~e~~~~----~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~ 678 (1317)
T KOG0612|consen 603 ENKKLRSELEKERR----QRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKM 678 (1317)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666665555444 2233667788999999999999999999999999988888888888877 446677799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHH
Q 005259 398 VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT-------AKAGELEQKVAMLEVECATLQQELQ 470 (705)
Q Consensus 398 lq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~-------aea~eLeqQls~LE~elkqLkQeLq 470 (705)
+++.++++..+|+.++.. .+ ...+++++..+.+++ +.+..+..++++|.+++.+.++.++
T Consensus 679 ~q~~~eq~~~E~~~~~L~--~~-----------e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~ 745 (1317)
T KOG0612|consen 679 LQNELEQENAEHHRLRLQ--DK-----------EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLN 745 (1317)
T ss_pred HHHHHHHHHHHHHHHHHh--hH-----------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchh
Confidence 999999999999888332 22 455677777777777 3346788999999999999999998
Q ss_pred HHHHHHHHcccCChHHHHHHHHHHH----HHHHHHHHHhh--hHHHHhhhhhHHHHHHHHHHHHH-----------Hhhh
Q 005259 471 DMEARLKRGQKKSPEEANQAIQMQA----WQDEVERARQG--QRDAENKLSSLEAEVQKMRVEMA-----------AMKR 533 (705)
Q Consensus 471 ~lE~e~~r~qek~~~ea~q~~qL~~----Lk~EL~~~rq~--qr~l~~kl~s~E~elqkLr~e~~-----------~~k~ 533 (705)
.++.........+..+..++++... ++.||....+. .+.++.+..++..++..++.+++ .+.+
T Consensus 746 ~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~~~~~~ 825 (1317)
T KOG0612|consen 746 ELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNTKMLEKQLKKLLDELAELKKQLEEENAQLRGLNRSAWG 825 (1317)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 8888877777655555544443111 23333311111 03345555556666665555553 2234
Q ss_pred hhcccchhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 534 DAEHYSREE------HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (705)
Q Consensus 534 q~~els~q~------~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e 588 (705)
+++.++.++ +..|++++.+..+...+|. ++++.|+-.+..|.+.+.+.++++
T Consensus 826 ~~k~lq~~leae~~~~~~~ktq~~e~~e~~~ek~---~~~~~er~~~~~Q~~~~~~~~~~~ 883 (1317)
T KOG0612|consen 826 QMKELQDQLEAEQCFSSLMKTQIIEDREEIAEKN---QSLQAERMLLPKQVEQAVTKADSE 883 (1317)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc---cchhhhhhhcchhcchhhchhhhH
Confidence 556666666 4567999999999999997 888999999999999888777766
No 4
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=99.16 E-value=2.3e-07 Score=105.49 Aligned_cols=143 Identities=15% Similarity=0.222 Sum_probs=89.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 301 el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
..+++...+...+..||..+..-+..+...++.+.+...++.+++.-+...+..++..+..+..+.+.+..+......+.
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~ 272 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK 272 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44455666777888888899999999999998888888889999888887766666666666666666555543333222
Q ss_pred hh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 381 EL-------TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE 443 (705)
Q Consensus 381 ~~-------~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeE 443 (705)
.. .....+..++.++..|=..++....+|...+..-......|+.....+...+.++..+|+.
T Consensus 273 ~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 273 KLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred hhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 21 2334455566666666666655555555555444444555555554444444444444443
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.98 E-value=2e-05 Score=96.53 Aligned_cols=8 Identities=13% Similarity=0.334 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 005259 671 HLFLMYLL 678 (705)
Q Consensus 671 HLWVm~VL 678 (705)
+-++.|+|
T Consensus 613 ~~~~~~~l 620 (1164)
T TIGR02169 613 EPAFKYVF 620 (1164)
T ss_pred HHHHHHHC
Confidence 33344443
No 6
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=98.93 E-value=4.1e-08 Score=102.49 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=45.4
Q ss_pred HHHHhHhhhhhhhhhHhhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005259 636 QKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQ 684 (705)
Q Consensus 636 k~Aa~~lDs~slr~g~fLRRyP~ARl~vlvYmvlLHLWVm~VL~~~~~~ 684 (705)
..-++.+|++.+.+|+|+..++.+|.|||||+|+||+|||++|+++.+.
T Consensus 195 ~~~L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~~~~~ 243 (248)
T PF08172_consen 195 YKRLSPPERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYYMSHS 243 (248)
T ss_pred HhcCChHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5668889999999999999999999999999999999999999986654
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.89 E-value=4.2e-05 Score=93.64 Aligned_cols=10 Identities=30% Similarity=0.248 Sum_probs=3.9
Q ss_pred hhhHhhhcch
Q 005259 648 RATRFLWRYP 657 (705)
Q Consensus 648 r~g~fLRRyP 657 (705)
.+-.||+.+.
T Consensus 562 ~~i~~l~~~~ 571 (1164)
T TIGR02169 562 EAIELLKRRK 571 (1164)
T ss_pred HHHHHHHhcC
Confidence 3333444333
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.87 E-value=3.1e-05 Score=98.62 Aligned_cols=156 Identities=21% Similarity=0.298 Sum_probs=79.3
Q ss_pred CCCCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 243 DDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (705)
Q Consensus 243 ~ek~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~ 322 (705)
+.|.++.-+.+++.++.|.+.+.....|-.+|...+.+|...+.++.....+=.. ..-.++..+..|+.+|..
T Consensus 980 ~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~-------~r~e~Ek~~rkle~el~~ 1052 (1930)
T KOG0161|consen 980 ISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR-------IRMELEKAKRKLEGELKD 1052 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555444444455555555554444444333222222 222233344445555544
Q ss_pred HHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh------HHHHHHHHHHH
Q 005259 323 YKSEVT---KVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL------TETRMIQALRE 393 (705)
Q Consensus 323 EQ~~l~---q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~------~ekeilqSLE~ 393 (705)
.|+... .....+...+..+..++..|..++......+..+...+.+++....-|.++++. +.++...-|..
T Consensus 1053 ~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ 1132 (1930)
T KOG0161|consen 1053 LQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSE 1132 (1930)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 222355556666666666666666666666666555555555555555555554 12233666666
Q ss_pred HHHHHHHHHHHH
Q 005259 394 ELASVERRAEEE 405 (705)
Q Consensus 394 eLkslq~~le~E 405 (705)
+|..++.+++..
T Consensus 1133 ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1133 ELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHH
Confidence 677776666654
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.83 E-value=0.00011 Score=89.81 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 549 RYRELTDLLYYKQTQLETMASEKAA 573 (705)
Q Consensus 549 rl~eLtE~L~eKQ~qlE~L~~Er~s 573 (705)
++..|...+...+..+..+......
T Consensus 462 ~~~~l~~~~~~~~~~~~~l~~~~~~ 486 (1179)
T TIGR02168 462 ALEELREELEEAEQALDAAERELAQ 486 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.81 E-value=0.00013 Score=93.31 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (705)
Q Consensus 547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (705)
...+.+|.+++.+.+..-..+..++..|......+...+
T Consensus 1188 ~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev 1226 (1930)
T KOG0161|consen 1188 ADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAEL 1226 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555555555555555444444433
No 11
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.74 E-value=0.00042 Score=79.42 Aligned_cols=72 Identities=25% Similarity=0.246 Sum_probs=44.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (705)
Q Consensus 513 kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e 588 (705)
.++.-..+.++|+.++...+.. ......+..+.|.+|...|.--|..-|.|..|+.-|..-.++++.|++..
T Consensus 386 ~lqEer~E~qkL~~ql~ke~D~----n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 386 HLQEERMERQKLEKQLGKEKDC----NRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556667777777432211 11123455566666777666666677778888888887777777777664
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=98.65 E-value=0.0022 Score=77.51 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 005259 517 LEAEVQKMRVEMA 529 (705)
Q Consensus 517 ~E~elqkLr~e~~ 529 (705)
+..++..++.++.
T Consensus 625 ~~~~l~~~r~~i~ 637 (880)
T PRK02224 625 RRERLAEKRERKR 637 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 13
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.63 E-value=0.00041 Score=82.79 Aligned_cols=73 Identities=19% Similarity=0.355 Sum_probs=56.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (705)
Q Consensus 510 l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~ 589 (705)
+...|...+.++..+..++.....+ ..++..+|.-|.+.|-.|+...+-|.++..+|+++|+...+.+..-.
T Consensus 292 ~~~eL~rk~~E~~~~qt~l~~~~~~--------~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~ 363 (775)
T PF10174_consen 292 LKLELSRKKSELEALQTRLETLEEQ--------DSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQ 363 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555566777777777777554433 25678899999999999999999999999999999999887776655
Q ss_pred H
Q 005259 590 S 590 (705)
Q Consensus 590 ~ 590 (705)
+
T Consensus 364 ~ 364 (775)
T PF10174_consen 364 A 364 (775)
T ss_pred H
Confidence 4
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=98.62 E-value=0.0018 Score=78.23 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (705)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e 378 (705)
...+..++.++..+..++...+..+.+++.+.+.+..
T Consensus 264 ~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~ 300 (880)
T PRK02224 264 RETIAETEREREELAEEVRDLRERLEELEEERDDLLA 300 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444443333333
No 15
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.54 E-value=0.0023 Score=78.07 Aligned_cols=185 Identities=19% Similarity=0.184 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---------
Q 005259 290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA--------- 360 (705)
Q Consensus 290 s~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~--------- 360 (705)
.++.-.++.+....++.+.|.+.+.+++.+|...|....+.... +.....+...|.....-+..+..
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~----~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~ 569 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADS----LEKVNSLRKQLEEAELDMRAESEDAGKLRKHS 569 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhh
Confidence 33333444444444455555555555665555554444443321 11223333333333222222222
Q ss_pred -HHHhHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 361 -LSEGNLASLQMNMESIMRNRELTETR--MIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARI 437 (705)
Q Consensus 361 -~~K~rleele~E~~rl~e~l~~~eke--ilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALael 437 (705)
.....+.....+.+.+.+.+.+++.. .+.-..+.+.+.....-.....|.....++..+..+|++.+.....-+...
T Consensus 570 ~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~ 649 (1317)
T KOG0612|consen 570 KELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKV 649 (1317)
T ss_pred hhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHH
Confidence 22222222222333444444443222 222222333333333333344555556666666666666553222222222
Q ss_pred HHHHHHHH-HHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHc
Q 005259 438 QRIADERT-AKAGELEQ--KVAMLEVECATLQQELQDMEARLKRG 479 (705)
Q Consensus 438 QrkLeEe~-aea~eLeq--Qls~LE~elkqLkQeLq~lE~e~~r~ 479 (705)
+. +..+. ....+.++ .-..++..++.+.++++.+..+++++
T Consensus 650 ~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 650 EE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 11111 11122222 12224555566666666666666666
No 16
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.54 E-value=0.0039 Score=74.03 Aligned_cols=119 Identities=21% Similarity=0.225 Sum_probs=61.9
Q ss_pred hhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005259 249 EQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT 328 (705)
Q Consensus 249 lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~ 328 (705)
|.-|+.++-.+|.+=- .+-++.+.||++ +..++-.+.+|++ --..+......||.+|.+.+-+..
T Consensus 229 Lr~QvrdLtEkLetlR-------~kR~EDk~Kl~E-lekmkiqleqlqE-------fkSkim~qqa~Lqrel~raR~e~k 293 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLR-------LKRAEDKAKLKE-LEKMKIQLEQLQE-------FKSKIMEQQADLQRELKRARKEAK 293 (1243)
T ss_pred HHHHHHHHHHHHHHHH-------hhhhhhHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554321 122234666654 2334444444444 334455667778888877776666
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 329 KVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 329 q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
..+. .-+.-..++.++.+.+..+.-+-...+.|.+.+|.+...++++++.++..
T Consensus 294 eaqe----~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletd 347 (1243)
T KOG0971|consen 294 EAQE----AKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETD 347 (1243)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6553 22224445555555444444444444555566666666655555554444
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=0.0018 Score=81.98 Aligned_cols=29 Identities=7% Similarity=-0.098 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 550 YRELTDLLYYKQTQLETMASEKAAAEFQL 578 (705)
Q Consensus 550 l~eLtE~L~eKQ~qlE~L~~Er~sL~~qL 578 (705)
+..|+-.-.....++..+..+...|..+|
T Consensus 1063 ~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1063 IDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.53 E-value=0.0048 Score=77.35 Aligned_cols=98 Identities=21% Similarity=0.292 Sum_probs=43.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005259 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV-ESNLAEALAAKNSEIETLVSSIDALK 356 (705)
Q Consensus 278 ~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~-es~~~ealsak~~eie~Le~rl~~Le 356 (705)
..++..-..++..+...|+.. .+.-.+...|..++..++..+...+-..... -..+.+.++.....+.++...+....
T Consensus 188 l~~~~~~~~el~~~l~~L~~q-~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (1163)
T COG1196 188 LERLEDLLEELEKQLEKLERQ-AEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAE 266 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555542 1222233444444444443333222111111 12344444444445555555555555
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 005259 357 KQAALSEGNLASLQMNMESI 376 (705)
Q Consensus 357 ~el~~~K~rleele~E~~rl 376 (705)
.++..++.++.++..+...+
T Consensus 267 ~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 267 KEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444
No 19
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.51 E-value=0.0054 Score=70.57 Aligned_cols=45 Identities=16% Similarity=0.034 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (705)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e 588 (705)
.+|+..++-+--+-.+-+...+.|.....-|+.+|+..--..-++
T Consensus 420 ~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~~~ 464 (546)
T PF07888_consen 420 QELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKWKE 464 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 456665555555555556666777888888888888765433333
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.50 E-value=0.0049 Score=77.25 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584 (705)
Q Consensus 547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~ 584 (705)
..++..+...+...+..+..+..+...+..+|..+.+.
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 496 (1163)
T COG1196 459 RDRLKELERELAELQEELQRLEKELSSLEARLDRLEAE 496 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555554443
No 21
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.45 E-value=0.0087 Score=70.42 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=45.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHH--HHHHHHHHHhhhHHHHhhhhhHHHHHHHHHH
Q 005259 449 GELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQA--WQDEVERARQGQRDAENKLSSLEAEVQKMRV 526 (705)
Q Consensus 449 ~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~--Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~ 526 (705)
.-|...++..++-++.++.+|+.++.-..+.-.. ..++.++..+.. ++.+..++|...-.++.+...+...++.|.+
T Consensus 280 s~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gd-seqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEK 358 (1265)
T KOG0976|consen 280 SVLGDELSQKEELVKELQEELDTLKQTRTRADGD-SEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEK 358 (1265)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 4455555666777777777777777655555422 223333333333 4555556666655555566666666666666
Q ss_pred HH
Q 005259 527 EM 528 (705)
Q Consensus 527 e~ 528 (705)
+.
T Consensus 359 kr 360 (1265)
T KOG0976|consen 359 KR 360 (1265)
T ss_pred HH
Confidence 55
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.44 E-value=0.0043 Score=78.59 Aligned_cols=18 Identities=0% Similarity=-0.031 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005259 556 LLYYKQTQLETMASEKAA 573 (705)
Q Consensus 556 ~L~eKQ~qlE~L~~Er~s 573 (705)
++.+...++..|.+.++.
T Consensus 1055 e~~~l~~~~~~l~~~~a~ 1072 (1311)
T TIGR00606 1055 EHQKLEENIDLIKRNHVL 1072 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444443333
No 23
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.43 E-value=0.0041 Score=66.36 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (705)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~ 575 (705)
..++..+..|+..+.......+.|..-+-+|.
T Consensus 265 ~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld 296 (312)
T PF00038_consen 265 AELEEELAELREEMARQLREYQELLDVKLALD 296 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444445555555444444455444444333
No 24
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.42 E-value=0.0011 Score=75.93 Aligned_cols=84 Identities=13% Similarity=0.214 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 497 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSRE---EHMELEKRYRELTDLLYYKQTQLETMASEKAA 573 (705)
Q Consensus 497 k~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q---~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~s 573 (705)
.+||...|...-.+.++++.+|.....|.+++..+.-+.++.... .-.+.+..+..|+++|-.--..++.|..=+-+
T Consensus 295 rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~ 374 (546)
T KOG0977|consen 295 REELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKIS 374 (546)
T ss_pred HHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhH
Confidence 466666666666666777666666666666665555444332222 23444666666777776666666666666666
Q ss_pred HHHHHHH
Q 005259 574 AEFQLEK 580 (705)
Q Consensus 574 L~~qLE~ 580 (705)
|...+..
T Consensus 375 Ld~EI~~ 381 (546)
T KOG0977|consen 375 LDAEIAA 381 (546)
T ss_pred HHhHHHH
Confidence 6555544
No 25
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.41 E-value=0.00034 Score=72.57 Aligned_cols=223 Identities=19% Similarity=0.223 Sum_probs=130.0
Q ss_pred CCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259 245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (705)
Q Consensus 245 k~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ 324 (705)
|+..++.++|++...+..--..|...+. ...+.......+..++..||+-|....+++.....++..++..+....
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~----~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~e 77 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEK----RAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESE 77 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555443322111111 233455566677778888888777777777888888888888888887
Q ss_pred HHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005259 325 SEVTKVES---NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401 (705)
Q Consensus 325 ~~l~q~es---~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~ 401 (705)
..+..+++ ...+++...+..+.........++..+.....++.-++.++.++-++....+.+ +..|+.+|..+.+.
T Consensus 78 r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~k-i~eLE~el~~~~~~ 156 (237)
T PF00261_consen 78 RARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESK-IKELEEELKSVGNN 156 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-HHHHHHHHHHHHHH
Confidence 77777775 334444455555555555556666666666666667777777777777766776 67777777766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005259 402 AEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (705)
Q Consensus 402 le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~ 476 (705)
+.. .......+..|+..++.....|..-+.++....+..-.++..|+.++..|+.++...+.+...+..++
T Consensus 157 lk~----lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 157 LKS----LEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 22233444555555555554444444444444444444444444444444444444444443333333
No 26
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.39 E-value=0.01 Score=68.51 Aligned_cols=96 Identities=26% Similarity=0.345 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (705)
Q Consensus 496 Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~ 575 (705)
.+.++..+++.-......+.+++.++.+++.++.......... ......+-..+..++.+..+-...++....|..-+.
T Consensus 321 ~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~-k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k 399 (522)
T PF05701_consen 321 EKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKA-KEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAK 399 (522)
T ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555556666777777777777775544322110 112345566667777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005259 576 FQLEKEMNRLQEVQSEA 592 (705)
Q Consensus 576 ~qLE~~~~~~~~e~~~~ 592 (705)
..++.+...+......+
T Consensus 400 ~E~e~~ka~i~t~E~rL 416 (522)
T PF05701_consen 400 EEAEQTKAAIKTAEERL 416 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777666666655433
No 27
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.32 E-value=0.016 Score=68.30 Aligned_cols=190 Identities=17% Similarity=0.221 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 005259 383 TETRMIQALREELASVERRAEEERAAHNAT--KMAAMEREVELEHRAAEASMALARIQRIADERT-------AKAGELEQ 453 (705)
Q Consensus 383 ~ekeilqSLE~eLkslq~~le~E~~aH~aT--k~ea~~Re~eLEee~~eLseALaelQrkLeEe~-------aea~eLeq 453 (705)
+.++ +.-++...+.++..++.+.+....+ +.+.... -++.++-.+..-.+.++..|-|++ .+..+|++
T Consensus 282 L~~E-lSqkeelVk~~qeeLd~lkqt~t~a~gdseqatk--ylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEK 358 (1265)
T KOG0976|consen 282 LGDE-LSQKEELVKELQEELDTLKQTRTRADGDSEQATK--YLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEK 358 (1265)
T ss_pred Hhhh-hhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 4555 5555555666666555544321111 1111111 123334334444445555555555 45579999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHH-HHHHHHHHHHHHHHHhh---hHHHHhhhhhHHHHHHHHHHHHH
Q 005259 454 KVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ-AIQMQAWQDEVERARQG---QRDAENKLSSLEAEVQKMRVEMA 529 (705)
Q Consensus 454 Qls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q-~~qL~~Lk~EL~~~rq~---qr~l~~kl~s~E~elqkLr~e~~ 529 (705)
+..|+..+...+++.+...+.++.++.. ++.. -+|+..++.-+-.+.+. .+.++..|+...+.+..|...+.
T Consensus 359 krd~al~dvr~i~e~k~nve~elqsL~~----l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~ 434 (1265)
T KOG0976|consen 359 KRDMALMDVRSIQEKKENVEEELQSLLE----LQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLS 434 (1265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999888888888763 2221 12333343333222222 22234444545555555555443
Q ss_pred Hhhhhhcccch-------------hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 005259 530 AMKRDAEHYSR-------------EEHMELEKRYRELTDLLYYKQ---TQLETMASEKAAAEFQLE 579 (705)
Q Consensus 530 ~~k~q~~els~-------------q~~~elE~rl~eLtE~L~eKQ---~qlE~L~~Er~sL~~qLE 579 (705)
....|..+.+. .-++++=.+|+.|.+.|.-+- .+++.|..|..--..+++
T Consensus 435 mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkie 500 (1265)
T KOG0976|consen 435 MADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIE 500 (1265)
T ss_pred HHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 33322211110 114566667777777665433 445555554444333433
No 28
>PRK03918 chromosome segregation protein; Provisional
Probab=98.29 E-value=0.024 Score=68.49 Aligned_cols=14 Identities=7% Similarity=-0.014 Sum_probs=6.4
Q ss_pred hHhhhcchhHHHHH
Q 005259 650 TRFLWRYPIARIIL 663 (705)
Q Consensus 650 g~fLRRyP~ARl~v 663 (705)
..++.--|++-+=.
T Consensus 814 ~~lilDEp~~~lD~ 827 (880)
T PRK03918 814 PLLILDEPTPFLDE 827 (880)
T ss_pred CeEEEeCCCcccCH
Confidence 33444455554433
No 29
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.27 E-value=0.017 Score=69.46 Aligned_cols=124 Identities=23% Similarity=0.345 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHH
Q 005259 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEA-------RIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETLV 349 (705)
Q Consensus 280 RLrk~~~elks~~aqLEell~el~e~~~~L~~-------rl~~LQaeL~~EQ~~l~q~es---~~~ealsak~~eie~Le 349 (705)
.|...+..-.+.+..||..|+.+.+-...|.. ....+..+|...+.....+++ ...-.|+.++.++..|.
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~q 307 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQ 307 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666665555555544 344555566666666666663 45556778888888888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005259 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (705)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~ 404 (705)
.++..+......++..++.+..++......-+.+... +..|+++|......++.
T Consensus 308 t~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsd-ve~Lr~rle~k~~~l~k 361 (775)
T PF10174_consen 308 TRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSD-VEALRFRLEEKNSQLEK 361 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888877777777777 67777776666655544
No 30
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.27 E-value=0.0031 Score=65.59 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 541 EEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (705)
Q Consensus 541 q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~ 589 (705)
+....|+.+|+.|++.|.+-...++.+......|..++..+...+....
T Consensus 169 ~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 169 EREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357788888888888888888888888888888888888877766654
No 31
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.26 E-value=0.031 Score=71.60 Aligned_cols=222 Identities=18% Similarity=0.284 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHH
Q 005259 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (705)
Q Consensus 306 ~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ek 385 (705)
-..++.+|..|+.+|...+..+....+.+.+-....+-.+.+....+..+..++......+..++.....+...++.+++
T Consensus 800 k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k 879 (1822)
T KOG4674|consen 800 KDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEK 879 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555689999999999998888888777777777777888888888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----H
Q 005259 386 RMIQALREELASVER------------RAEEERAAHNATKMAAMEREVEL---EHRAAEASMALARIQRIADERT----A 446 (705)
Q Consensus 386 eilqSLE~eLkslq~------------~le~E~~aH~aTk~ea~~Re~eL---Eee~~eLseALaelQrkLeEe~----a 446 (705)
+ +.+.......+.. .+..+...|..++......+..+ ++.....++++..+-..+++=+ +
T Consensus 880 ~-l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea 958 (1822)
T KOG4674|consen 880 R-LKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEA 958 (1822)
T ss_pred H-HHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 7 5555544333332 22233333333333333332222 2233334444444444444443 2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChH-HHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHH
Q 005259 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE-EANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMR 525 (705)
Q Consensus 447 ea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~-ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr 525 (705)
+...+..++..++.++-.|+.++..+..++...-+.... ...+..++..++.|+..++.....+...+..+..++....
T Consensus 959 ~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~ 1038 (1822)
T KOG4674|consen 959 KIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTET 1038 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444444444444444444444444444333222111 2333445566666666655555444444444555544444
Q ss_pred HHH
Q 005259 526 VEM 528 (705)
Q Consensus 526 ~e~ 528 (705)
..|
T Consensus 1039 ~~~ 1041 (1822)
T KOG4674|consen 1039 EQL 1041 (1822)
T ss_pred HHH
Confidence 444
No 32
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.23 E-value=0.045 Score=70.16 Aligned_cols=100 Identities=13% Similarity=0.216 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005259 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349 (705)
Q Consensus 270 ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le 349 (705)
.+.=+.+.-..|++....+++.+..++.-+.-..++...|...+..+.++..........++ ..+...+..+..+.
T Consensus 655 ~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~----~~i~~~~q~~~~~s 730 (1822)
T KOG4674|consen 655 NLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQ----STISKQEQTVHTLS 730 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34445555666667777777777777776666667777777777766666665554444333 34445566666777
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 005259 350 SSIDALKKQAALSEGNLASLQMNM 373 (705)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~ 373 (705)
..+..+...++.+...++.+-.|+
T Consensus 731 ~eL~~a~~k~~~le~ev~~LKqE~ 754 (1822)
T KOG4674|consen 731 QELLSANEKLEKLEAELSNLKQEK 754 (1822)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776664
No 33
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=0.028 Score=68.82 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=33.5
Q ss_pred HHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAA 574 (705)
Q Consensus 499 EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL 574 (705)
+|..+......+..++.+.+.++.+++++. ..+..+++.+++.+++.-..+.........|
T Consensus 543 ~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~---------------~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl 603 (1293)
T KOG0996|consen 543 ELDDLKEELPSLKQELKEKEKELPKLRKEE---------------RNLKSQLNKLRQRVEEAKSSLSSSRSRNKVL 603 (1293)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 343333333334445555666666666665 3344566777777776666665555544444
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=98.21 E-value=0.036 Score=67.10 Aligned_cols=27 Identities=11% Similarity=0.485 Sum_probs=12.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005259 451 LEQKVAMLEVECATLQQELQDMEARLK 477 (705)
Q Consensus 451 LeqQls~LE~elkqLkQeLq~lE~e~~ 477 (705)
+..++..+......++..+..++..+.
T Consensus 403 l~~~i~~l~~~~~~~~~~i~eL~~~l~ 429 (880)
T PRK03918 403 IEEEISKITARIGELKKEIKELKKAIE 429 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 35
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.20 E-value=0.034 Score=71.23 Aligned_cols=186 Identities=17% Similarity=0.168 Sum_probs=100.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005259 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALK 356 (705)
Q Consensus 277 ~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le 356 (705)
..++.+++..+..+.....|..+.+..+....+..++..|+.+....+.-+...+. +. .....+..+...+..+.
T Consensus 287 EAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee-~l----r~q~ei~~l~~~LeELe 361 (1486)
T PRK04863 287 EALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT-AL----RQQEKIERYQADLEELE 361 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHH
Confidence 34666677777777777777777777777777788888888887776654433332 11 11233334444444444
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 005259 357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRA--------- 427 (705)
Q Consensus 357 ~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~--------- 427 (705)
.++......++++..+...+..++...+.+ +..++..+..+++.+..-... ..........++.++
T Consensus 362 e~Lee~eeeLeeleeeleeleeEleelEee-LeeLqeqLaelqqel~elQ~e----l~q~qq~i~~Le~~~~~~~~~~~S 436 (1486)
T PRK04863 362 ERLEEQNEVVEEADEQQEENEARAEAAEEE-VDELKSQLADYQQALDVQQTR----AIQYQQAVQALERAKQLCGLPDLT 436 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCCCC
Confidence 444444444444444444444444444444 444444444443333321111 111111223333332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 428 -AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (705)
Q Consensus 428 -~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~l 472 (705)
.+|...+...+.++.+....+.++++++..++..++++++....+
T Consensus 437 dEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l 482 (1486)
T PRK04863 437 ADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLV 482 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666777777777777776666666555443
No 36
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=0.031 Score=68.51 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (705)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~ 589 (705)
..++.-|..+..++.++.+.+..+..+-..+..+|-.+..++.+..
T Consensus 545 ~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 545 DDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666667777777777777777777777777666655543
No 37
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.19 E-value=0.013 Score=69.85 Aligned_cols=220 Identities=18% Similarity=0.270 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhhhhhcchHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259 252 QLDEAQGLLKTTISTGQSKEARLARV-------CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (705)
Q Consensus 252 QLee~n~~LrsE~eal~~ke~qLa~~-------~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ 324 (705)
.|+.-..+||++..+.-.-|..|.-- --.|+-.++.++..+.+|+..++.+......=...+..||.-|..|+
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777754433333333322 22334444444444444444333222211111123455555555555
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005259 325 SEVTKVESNLAEALAAKNSEIETLVSS----IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400 (705)
Q Consensus 325 ~~l~q~es~~~ealsak~~eie~Le~r----l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~ 400 (705)
..+...+..+.+.-.++..+-+.-... -..-.+--..+|.|..+++.|.++|..++-.++.+ +..++.++..++.
T Consensus 502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~-~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQ-IRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 555555543332211111111100000 00000123346777777777777777777777777 6667766644443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005259 401 RAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (705)
Q Consensus 401 ~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~ 476 (705)
-- .| .|..+. .++.-+.-|++.+.-|...|++-.|.-.+=..-..+.++|++.++..+..--++|.+++..+
T Consensus 581 ~~-~e--~~~~~e-~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 581 YE-KE--SEKDTE-VLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HH-hh--hhhhHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11 111111 13334445555555555555554444444444445555555555544444444444444333
No 38
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.18 E-value=0.058 Score=68.14 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=6.6
Q ss_pred cccccccccCCCCcc
Q 005259 189 AGQITKSADADAPLK 203 (705)
Q Consensus 189 ~~~~~~~~~~~~~~~ 203 (705)
.++.=+..|++....
T Consensus 188 ~~vln~~~~~d~iK~ 202 (1201)
T PF12128_consen 188 NAVLNKKLDFDFIKN 202 (1201)
T ss_pred HHHHhccccHHHHHH
Confidence 444444444444433
No 39
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.10 E-value=0.024 Score=66.75 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=38.0
Q ss_pred CchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005259 246 PTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAER 303 (705)
Q Consensus 246 ~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~ 303 (705)
+.+++..-|+....|+.+.-.++.|-.+|...+..|++.-.....++..||..|..++
T Consensus 6 l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 6 LKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666667666666666667777777777776666666666666555544
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.07 E-value=0.0035 Score=74.48 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 331 ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 331 es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
+.+++.+++...+--..+..+|..+..+...+..++..+...+++=++.+..+|++
T Consensus 441 E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr 496 (697)
T PF09726_consen 441 EQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR 496 (697)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444444445566666666666666666666666655544444444444
No 41
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.021 Score=67.23 Aligned_cols=145 Identities=15% Similarity=0.208 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHH----
Q 005259 420 EVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQA---- 495 (705)
Q Consensus 420 e~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~---- 495 (705)
+..|.....+|+.-|....-.+.-.+..++++..++..+-.+..+++++|+.+...+-++-......-.++-+...
T Consensus 446 letLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~ 525 (1118)
T KOG1029|consen 446 LETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKE 525 (1118)
T ss_pred HHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccC
Confidence 3334444444555555555566666667777777777777777777777777766665554211111111111111
Q ss_pred ---HHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 005259 496 ---WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS-EK 571 (705)
Q Consensus 496 ---Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~-Er 571 (705)
-+++|+.++..+..++.. +++.+..|.++.+.-..++ .-+..|+.+|++.+..+|.+.+.+.. ++
T Consensus 526 ~~~~~s~L~aa~~~ke~irq~---ikdqldelskE~esk~~ei--------di~n~qlkelk~~~~~q~lake~~yk~e~ 594 (1118)
T KOG1029|consen 526 TTQRKSELEAARRKKELIRQA---IKDQLDELSKETESKLNEI--------DIFNNQLKELKEDVNSQQLAKEELYKNER 594 (1118)
T ss_pred cchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234555544444333222 3334444444443322222 45677888899999888888887766 55
Q ss_pred HHHH
Q 005259 572 AAAE 575 (705)
Q Consensus 572 ~sL~ 575 (705)
.-+.
T Consensus 595 d~~k 598 (1118)
T KOG1029|consen 595 DKLK 598 (1118)
T ss_pred HHHH
Confidence 5554
No 42
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.04 E-value=0.074 Score=64.44 Aligned_cols=170 Identities=19% Similarity=0.212 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259 308 SYEARIKQLEQELSVYKSEVTKVES---NLAEAL--AAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (705)
Q Consensus 308 ~L~~rl~~LQaeL~~EQ~~l~q~es---~~~eal--sak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (705)
.+.+|+..|...-...+++...++. .+..+. .+.+.+|=.|...+..|..+......+++++..|+..++=.-..
T Consensus 261 fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eq 340 (1195)
T KOG4643|consen 261 FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQ 340 (1195)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666676666666666555554 222222 34556666666777777777777777777777776655432222
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 005259 383 ----------------TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVEL----------EHRAAEASMALAR 436 (705)
Q Consensus 383 ----------------~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eL----------Eee~~eLseALae 436 (705)
.+..-++.....|.+ -..+..+...|+-|..=-+.+..+. +.+..-|+.-..+
T Consensus 341 L~~~~ellq~~se~~E~en~Sl~~e~eqLts-~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~ 419 (1195)
T KOG4643|consen 341 LDGQMELLQIFSENEELENESLQVENEQLTS-DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEI 419 (1195)
T ss_pred hhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHH
Confidence 112212223333443 2356666666666544333333333 3333344444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005259 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (705)
Q Consensus 437 lQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r 478 (705)
++..+.+......+|+.-..+|-.+.+.+.++......-+.+
T Consensus 420 Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~r 461 (1195)
T KOG4643|consen 420 LEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSR 461 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 555555555555555555555555555555555444443333
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.01 E-value=0.064 Score=67.73 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhhh
Q 005259 492 QMQAWQDEVERARQGQ 507 (705)
Q Consensus 492 qL~~Lk~EL~~~rq~q 507 (705)
++..+..++..+++..
T Consensus 470 ~~~~~~~~~~~a~~~~ 485 (1201)
T PF12128_consen 470 QLEQADKRLEQAQEQQ 485 (1201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 44
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.00 E-value=0.031 Score=64.57 Aligned_cols=279 Identities=19% Similarity=0.234 Sum_probs=159.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005259 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEAR--------IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSS 351 (705)
Q Consensus 280 RLrk~~~elks~~aqLEell~el~e~~~~L~~r--------l~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~r 351 (705)
-|-.++.-|--+++.||..++.|..-...|+.. ..--+.++...+..+... ......++..
T Consensus 46 ~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~-----------~~~ra~~e~e 114 (546)
T KOG0977|consen 46 ELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDET-----------ARERAKLEIE 114 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 344455555556666666666555555444441 112233333322222222 2234466777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEAS 431 (705)
Q Consensus 352 l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLs 431 (705)
+..|..++..++.++++.+........++.+.... +..++.++..++.+... ...-+..|-.++.-+-
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~-l~~leAe~~~~krr~~~-----------le~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSR-LSELEAEINTLKRRIKA-----------LEDELKRLKAENSRLR 182 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-hhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHhhhhH
Confidence 88888888888888888888888887777777777 77777777766655432 2224445566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHcc-cCChH-----HHHHHHHHHH-HHHHH
Q 005259 432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQ----QELQDMEARLKRGQ-KKSPE-----EANQAIQMQA-WQDEV 500 (705)
Q Consensus 432 eALaelQrkLeEe~aea~eLeqQls~LE~elkqLk----QeLq~lE~e~~r~q-ek~~~-----ea~q~~qL~~-Lk~EL 500 (705)
..|..+.+.++.+..--.++.-++..|..++.-++ ++|......+.+-- ..... ++..+.++++ ...-+
T Consensus 183 ~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~ 262 (546)
T KOG0977|consen 183 EELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAIS 262 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888666666666666666665555 44544444333333 11111 1211222222 11112
Q ss_pred HHHHhhhHH-HHhhhhhHH--------------HHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHH---------
Q 005259 501 ERARQGQRD-AENKLSSLE--------------AEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDL--------- 556 (705)
Q Consensus 501 ~~~rq~qr~-l~~kl~s~E--------------~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~--------- 556 (705)
.+-|+..+. ++.+|.... +++..+|..+..+..++.++. .....|+++|..|.-+
T Consensus 263 ~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE-~~n~~L~~~I~dL~~ql~e~~r~~e 341 (546)
T KOG0977|consen 263 RQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELE-SRNSALEKRIEDLEYQLDEDQRSFE 341 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhcccc-ccChhHHHHHHHHHhhhhhhhhhhh
Confidence 222222211 234444444 556666666655555544432 2245666777776655
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 557 --LYYKQTQLETMASEKAAAEFQLEKEM 582 (705)
Q Consensus 557 --L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (705)
|..|.+.+..|-.|...|..+|+.+.
T Consensus 342 ~~L~~kd~~i~~mReec~~l~~Elq~Ll 369 (546)
T KOG0977|consen 342 QALNDKDAEIAKMREECQQLSVELQKLL 369 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677888888889999988888876
No 45
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.97 E-value=0.0083 Score=69.01 Aligned_cols=139 Identities=19% Similarity=0.227 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL---TETRMIQALREELASVERRAEEERAAHNATKMAAM 417 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~---~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~ 417 (705)
...+...|..++..+.+++..++..+..++.+..++...... +..+...+|...|.-++.++..+...+..+...++
T Consensus 107 l~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl 186 (511)
T PF09787_consen 107 LSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFL 186 (511)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 344555666777777777888888888876665555544443 23333588888899999999999888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 005259 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (705)
Q Consensus 418 ~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~q 480 (705)
.|..+++.....|.+... +...+.....+..++..++.++.......+++|.+|+....+..
T Consensus 187 ~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iL 248 (511)
T PF09787_consen 187 KRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRIL 248 (511)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 999999988999999998 45578888899999999999999999999999999997666554
No 46
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.041 Score=64.91 Aligned_cols=165 Identities=12% Similarity=0.167 Sum_probs=88.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQ 438 (705)
Q Consensus 359 l~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQ 438 (705)
+.-.+.|..++.+++.+=++.+-- .+..+..|..+|++|...+.+-.. |+.+..--....-+.+..+.
T Consensus 411 lewErar~qem~~Qk~reqe~iv~-~nak~~ql~~eletLn~k~qqls~-----------kl~Dvr~~~tt~kt~ie~~~ 478 (1118)
T KOG1029|consen 411 LEWERARRQEMLNQKNREQEWIVY-LNAKKKQLQQELETLNFKLQQLSG-----------KLQDVRVDITTQKTEIEEVT 478 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh-----------hhhhheeccchHHHHHHHhh
Confidence 555566666666666554444433 333356666666666655432111 22222111111223344555
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhHH
Q 005259 439 RIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLE 518 (705)
Q Consensus 439 rkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~E 518 (705)
+..+-.+.+..+|..++..+..-+-.+-.+-+.++.++.+.+....+...+..+|.++..+-..++++ +++++..++
T Consensus 479 ~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~---ikdqldels 555 (1118)
T KOG1029|consen 479 KQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQA---IKDQLDELS 555 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 55556666777777777777777777777777777777776655554444445555532211112232 344555566
Q ss_pred HHHHHHHHHHHHhhhhhccc
Q 005259 519 AEVQKMRVEMAAMKRDAEHY 538 (705)
Q Consensus 519 ~elqkLr~e~~~~k~q~~el 538 (705)
.|...-..++.....++++|
T Consensus 556 kE~esk~~eidi~n~qlkel 575 (1118)
T KOG1029|consen 556 KETESKLNEIDIFNNQLKEL 575 (1118)
T ss_pred HHHHHHHHhhhhHHHHHHHH
Confidence 66666666666666666443
No 47
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.88 E-value=0.058 Score=57.61 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005259 281 LSSRLQEYKSENAQLEELLVAERELSRSYEA 311 (705)
Q Consensus 281 Lrk~~~elks~~aqLEell~el~e~~~~L~~ 311 (705)
|=.++..|-.+++.||..+..+......+..
T Consensus 9 LNdRla~YIekVr~LE~~N~~Le~~i~~~~~ 39 (312)
T PF00038_consen 9 LNDRLASYIEKVRFLEQENKRLESEIEELRE 39 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 3445566666666666665555554444433
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.84 E-value=0.25 Score=63.67 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHH
Q 005259 495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRV 526 (705)
Q Consensus 495 ~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~ 526 (705)
.+..++....+....++.++..+...+.+|..
T Consensus 569 ~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~ 600 (1486)
T PRK04863 569 SLSESVSEARERRMALRQQLEQLQARIQRLAA 600 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433334444444444444443
No 49
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=0.084 Score=64.03 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=18.5
Q ss_pred HHHHHHhHhhhhhhhhhHhhhcchhHHHHHHH
Q 005259 634 QLQKAAKLLDSGAVRATRFLWRYPIARIILLF 665 (705)
Q Consensus 634 ~vk~Aa~~lDs~slr~g~fLRRyP~ARl~vlv 665 (705)
.++..+..||..--..-..=|+.---++.-||
T Consensus 1012 kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IF 1043 (1174)
T KOG0933|consen 1012 KIKKTIEKLDEKKREELNKAWEKVNKDFGSIF 1043 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 56777777886665555555554444444433
No 50
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.79 E-value=0.14 Score=59.37 Aligned_cols=144 Identities=19% Similarity=0.276 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHH----HHHHHHHHHHHH
Q 005259 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI----QMQAWQDEVERA 503 (705)
Q Consensus 428 ~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~----qL~~Lk~EL~~~ 503 (705)
..+...+..+...|++.+..+.........|......|+.+|...+..+.+++++.......+. +|...+.+|...
T Consensus 277 ~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 277 SELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 3334455566666666666665555555666666666666666666666666653332222121 233344444433
Q ss_pred HhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 504 RQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (705)
Q Consensus 504 rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~ 583 (705)
+..-......+..+-..++.+..+....+ .-.....+++..-...++.......++..+|+.+..
T Consensus 357 ~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak---------------~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~k 421 (522)
T PF05701_consen 357 KAEEEKAKEAMSELPKALQQLSSEAEEAK---------------KEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALK 421 (522)
T ss_pred HhhhcchhhhHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322223334445555555555553333 233344444444445555555555555555555444
Q ss_pred HHH
Q 005259 584 RLQ 586 (705)
Q Consensus 584 ~~~ 586 (705)
-+.
T Consensus 422 e~e 424 (522)
T PF05701_consen 422 EAE 424 (522)
T ss_pred HHH
Confidence 333
No 51
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.77 E-value=0.16 Score=59.56 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHhhhhhcchH----HHHHHHHHhhhhHHHHHHHHHH----------HHHHHHHHHHHHHhHHHHHHHHHH
Q 005259 251 DQLDEAQGLLKTTISTGQSK----EARLARVCAGLSSRLQEYKSEN----------AQLEELLVAERELSRSYEARIKQL 316 (705)
Q Consensus 251 kQLee~n~~LrsE~eal~~k----e~qLa~~~~RLrk~~~elks~~----------aqLEell~el~e~~~~L~~rl~~L 316 (705)
+.-+|+.+.|.+|.+-|+-+ ...+..+.++.++.....++.. ..|...++.--++-+.++..|..+
T Consensus 449 aEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~ 528 (961)
T KOG4673|consen 449 AEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKH 528 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45678888888888877665 5667777777776665444433 333333333233344444455555
Q ss_pred HHHHHHHHHHHHHH
Q 005259 317 EQELSVYKSEVTKV 330 (705)
Q Consensus 317 QaeL~~EQ~~l~q~ 330 (705)
++++.+-...+...
T Consensus 529 ~ae~~rq~~~~~~s 542 (961)
T KOG4673|consen 529 QAELTRQKDYYSNS 542 (961)
T ss_pred HHHHHHHHHhhhhH
Confidence 55555544444333
No 52
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.73 E-value=0.0086 Score=58.09 Aligned_cols=139 Identities=20% Similarity=0.254 Sum_probs=115.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMER 419 (705)
Q Consensus 340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~R 419 (705)
++..+..+...+...++.+++.+..+....+.++..|..++..++.+ +..++..|..++..++.-. .+...-..+..|
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~e-ld~~~~~l~~~k~~lee~~-~~~~~~E~l~rr 81 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEE-LDKLEEQLKEAKEKLEESE-KRKSNAEQLNRR 81 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHH-HHHHhHHHHHhh
Confidence 45556667778888888888888888888888888888888888888 8888888888888876642 222333466777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 005259 420 EVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (705)
Q Consensus 420 e~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~q 480 (705)
..-||++.......|.....++.+.-.++..+++++..|+.....+-.+++.+..++..++
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 8888999988899999999999999999999999999999999999999999988887655
No 53
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.043 Score=62.75 Aligned_cols=195 Identities=24% Similarity=0.268 Sum_probs=127.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 372 NMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451 (705)
Q Consensus 372 E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eL 451 (705)
++..|+..+..++.+ ..+.+-+|..+++++++=...|+.+-..-..|+..| |++--++-...
T Consensus 44 eK~~Lkqq~eEleae-yd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesL-----------------LqESaakE~~y 105 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAE-YDLARTELDQTKEALGQYRSQHKKVARDGEEREESL-----------------LQESAAKEEYY 105 (772)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHH-----------------HHHHHHhHHHH
Confidence 445555556666666 667777788888888887777777755555555444 23333444566
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHH--H-HH-HHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHH
Q 005259 452 EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN--Q-AI-QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE 527 (705)
Q Consensus 452 eqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~--q-~~-qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e 527 (705)
-.++-.|+.++++++++|.....+.+++......... . ++ +-..++.||...+-.-.-+-...+++|++.=-|.++
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq 185 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 6778888889999999998888888887754333221 1 11 223366666544322111234456788898889999
Q ss_pred HHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 528 MAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (705)
Q Consensus 528 ~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~ 589 (705)
+..+++.-.++ --++--|+.|.++..-...+++.+..=+.--..|||-++-.+..++
T Consensus 186 Vs~LR~sQVEy-----EglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~ER 242 (772)
T KOG0999|consen 186 VSNLRQSQVEY-----EGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQER 242 (772)
T ss_pred HHHHhhhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 98777532111 2235567888888888888888888877777888888877676664
No 54
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.66 E-value=0.25 Score=58.48 Aligned_cols=67 Identities=21% Similarity=0.252 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005259 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT 328 (705)
Q Consensus 252 QLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~ 328 (705)
||-+....|..|-+. .+..|+..-.-|+-+++++-+.++.+.+.-.....++..|+..|...+..+.
T Consensus 1 ql~e~l~qlq~Erd~----------ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 1 QLMESLKQLQAERDQ----------YAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred ChHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567778888888775 6777777777788888888887777777777777778888888777665444
No 55
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.62 E-value=0.26 Score=57.83 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChH
Q 005259 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE 485 (705)
Q Consensus 435 aelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ 485 (705)
..+++.+..+++++.++++++..+..++++++.+...++.++++.+.+..+
T Consensus 714 ~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q 764 (961)
T KOG4673|consen 714 GQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQ 764 (961)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888999999999999999888888888888888888777654443
No 56
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.61 E-value=0.35 Score=58.94 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQ 453 (705)
Q Consensus 388 lqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeq 453 (705)
..+|..+...++.++.+.... ..+.....+.|..++..+.......++.+.....+...+.+
T Consensus 410 ~KnLs~k~e~Leeri~ql~qq----~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q 471 (1195)
T KOG4643|consen 410 HKNLSKKHEILEERINQLLQQ----LAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQ 471 (1195)
T ss_pred hHhHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHH
Confidence 444555555666655554332 44555577777778877887777777777776544433333
No 57
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.52 E-value=0.26 Score=60.57 Aligned_cols=227 Identities=14% Similarity=0.219 Sum_probs=101.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005259 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN------MESI-----MRNRELTETRMIQALREELASVERRA 402 (705)
Q Consensus 334 ~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E------~~rl-----~e~l~~~ekeilqSLE~eLkslq~~l 402 (705)
+.+.+....+.|..+++.+..++.++++.+..+..+..- ..++ |--+.+...+ +..++.+++-.|.+.
T Consensus 219 ~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~q-l~~~~~~i~~~qek~ 297 (1074)
T KOG0250|consen 219 IMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQ-LNNQEEEIKKKQEKV 297 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 444555566677777777777777777777666543321 1111 1122223444 555555544444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccC
Q 005259 403 EEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK 482 (705)
Q Consensus 403 e~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek 482 (705)
.. ...+..+.+..+..+-.-++..+.++++-+.++..-...+..+-.+++.++.+..+++.++...++.
T Consensus 298 ~~-----------l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~ 366 (1074)
T KOG0250|consen 298 DT-----------LQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENS 366 (1074)
T ss_pred HH-----------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1112222222232233333444444444444444444444444444444444444433333333311
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhh-HHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 005259 483 SPEEANQAIQMQAWQDEVERARQGQ-RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ 561 (705)
Q Consensus 483 ~~~ea~q~~qL~~Lk~EL~~~rq~q-r~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ 561 (705)
...... ....+...+.+++... ..+...+...+.++..|..+++.+..+ ...|...++.+++.+...+
T Consensus 367 i~~~k~---~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~--------~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 367 IRKLKK---EVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQ--------INSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhH
Confidence 111000 0111233333333222 333445555666666666666443321 1344445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005259 562 TQLETMASEKAAAEFQLEKEMN 583 (705)
Q Consensus 562 ~qlE~L~~Er~sL~~qLE~~~~ 583 (705)
.....+..++..+...++--..
T Consensus 436 ee~~~i~~~i~~l~k~i~~~~~ 457 (1074)
T KOG0250|consen 436 EEKEHIEGEILQLRKKIENISE 457 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666655554443
No 58
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.47 E-value=0.56 Score=57.93 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584 (705)
Q Consensus 548 ~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~ 584 (705)
.++..|.-....++.+|+...++..-|..+++..+.-
T Consensus 1710 ~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDH 1746 (1758)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3667777778888888888888888888888886643
No 59
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.47 E-value=0.14 Score=51.98 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASM 432 (705)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLse 432 (705)
.+++.++..+|.-+..+++++.+|+...-.++++ .++|..++.+++..-..=...+.-++. +..+|-..+..|-.
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE-~q~L~~~i~~Lqeen~kl~~e~~~lk~----~~~eL~~~~~~Lq~ 137 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKE-QQSLVAEIETLQEENGKLLAERDGLKK----RSKELATEKATLQR 137 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHhhhhHHH----HHHHHHHhhHHHHH
Confidence 3456667777777777777777777777777777 777777777777665543333333322 44444334433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005259 433 ALARIQRIADERTAKAGELEQKVAMLE 459 (705)
Q Consensus 433 ALaelQrkLeEe~aea~eLeqQls~LE 459 (705)
-+..+..-+...-+.+.+-..++..+.
T Consensus 138 Ql~~~e~l~~~~da~l~e~t~~i~eL~ 164 (193)
T PF14662_consen 138 QLCEFESLICQRDAILSERTQQIEELK 164 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333333333333333333334433333
No 60
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.41 E-value=3.4e-05 Score=93.33 Aligned_cols=61 Identities=28% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHc
Q 005259 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (705)
Q Consensus 419 Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~ 479 (705)
|...|+++.-.+..-|.+++..+++....+..|++...-|..++..++.+|+.....+..+
T Consensus 315 ~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~L 375 (859)
T PF01576_consen 315 RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAEL 375 (859)
T ss_dssp -------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555556666666666666666666666666655555555555554444333
No 61
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.39 E-value=0.49 Score=58.28 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHH
Q 005259 436 RIQRIADERTAKAGELEQKVAMLEVEC-ATLQQELQDME 473 (705)
Q Consensus 436 elQrkLeEe~aea~eLeqQls~LE~el-kqLkQeLq~lE 473 (705)
.++..+.+-+..++.+++++..++.+. ..+..++...+
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e 400 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERE 400 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 444445555555555555555554444 33333333333
No 62
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.37 E-value=0.28 Score=56.41 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQMNMESI 376 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl 376 (705)
+++..+..+..++..++..+..++.++..+
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444443333333
No 63
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.34 E-value=0.22 Score=57.23 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=3.6
Q ss_pred hhhHHHHHH
Q 005259 630 GASVQLQKA 638 (705)
Q Consensus 630 ~~~~~vk~A 638 (705)
|..++|.=|
T Consensus 472 Ge~~r~~la 480 (562)
T PHA02562 472 GEKARIDLA 480 (562)
T ss_pred hHHHHHHHH
Confidence 433444433
No 64
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.28 E-value=6e-05 Score=91.23 Aligned_cols=53 Identities=28% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccC
Q 005259 430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK 482 (705)
Q Consensus 430 LseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek 482 (705)
+.++-.-+++.+.+....+.++..++..|+--...|..+++++..++.+.+..
T Consensus 319 lEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~ 371 (859)
T PF01576_consen 319 LEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAA 371 (859)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555556667777777777777777777777777777776643
No 65
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.25 E-value=0.73 Score=54.42 Aligned_cols=227 Identities=21% Similarity=0.231 Sum_probs=134.8
Q ss_pred hHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHH----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSR----------LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELS 321 (705)
Q Consensus 252 QLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~----------~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~ 321 (705)
+++.+...++.++. .|+.+.+.+-.++.+. +++++..+++|++.-..+.+..+........|.++|.
T Consensus 223 k~~~leeey~~E~n---~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~ 299 (786)
T PF05483_consen 223 KFEDLEEEYKKEVN---DKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELE 299 (786)
T ss_pred HHHHHHHHHHHHhh---hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Confidence 34445555555543 4666777776666554 4566777888888777777776666666666666665
Q ss_pred HHHHHHHHHH----------------------------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005259 322 VYKSEVTKVE----------------------------SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (705)
Q Consensus 322 ~EQ~~l~q~e----------------------------s~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~ 373 (705)
..+.++.... .++..+..+....+.+++..+..|+.-+.....|+.+.+.++
T Consensus 300 ~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~l 379 (786)
T PF05483_consen 300 DIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQL 379 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5554444322 123333444445556666777788777877888888888887
Q ss_pred HHHHHHhhhHHHH------HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH--------------H---
Q 005259 374 ESIMRNRELTETR------MIQALREELASVERRAEEER------AAHNATKMAAMEREVEL--------------E--- 424 (705)
Q Consensus 374 ~rl~e~l~~~eke------ilqSLE~eLkslq~~le~E~------~aH~aTk~ea~~Re~eL--------------E--- 424 (705)
..+.-++..+..+ -.+..+.+|..++.-++.-. ........++..++.+| +
T Consensus 380 k~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l 459 (786)
T PF05483_consen 380 KILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQL 459 (786)
T ss_pred HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7777666653111 12333344555544443311 10001111111111111 1
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccc
Q 005259 425 ----HRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQK 481 (705)
Q Consensus 425 ----ee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qe 481 (705)
..+..|+..+..+-..+..+..+-.+|-..+..+..+-+++.|+..++-.++...++
T Consensus 460 ~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qe 520 (786)
T PF05483_consen 460 TTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQE 520 (786)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 133666777777877888777777788888888888888888888877777766654
No 66
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.22 E-value=0.91 Score=55.01 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=23.9
Q ss_pred hHhhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005259 650 TRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQAD 686 (705)
Q Consensus 650 g~fLRRyP~ARl~vlvYmvlLHLWVm~VL~~~~~~~~ 686 (705)
--+++.|..-++.|.+-++-|--.+-..|+.|-|.-+
T Consensus 652 eavt~ghageqyaf~arllyll~slqaaL~q~e~al~ 688 (1243)
T KOG0971|consen 652 EAVTRGHAGEQYAFAARLLYLLSSLQAALHQYEHALS 688 (1243)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3467778888887777665444455666777666533
No 67
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.18 E-value=1.1 Score=55.04 Aligned_cols=111 Identities=18% Similarity=0.271 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 005259 290 SENAQLEELLVA---ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNL 366 (705)
Q Consensus 290 s~~aqLEell~e---l~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rl 366 (705)
+.++++|..|.. ++.+++.|.+.+.-...+|......+.+-+. . ..-+.+..+..++..++++++.....+
T Consensus 691 ~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~--~----~~~~~~~~~~e~v~e~~~~Ike~~~~~ 764 (1174)
T KOG0933|consen 691 KELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEF--H----KLLDDLKELLEEVEESEQQIKEKERAL 764 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH--h----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444432 3445666666665555555554443333222 1 122333344555555555555555555
Q ss_pred HHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 367 ASLQMNMESIMRNREL----TETRMIQALREELASVERRAEEERA 407 (705)
Q Consensus 367 eele~E~~rl~e~l~~----~ekeilqSLE~eLkslq~~le~E~~ 407 (705)
-+.+.....+-.+..+ .+.+ +..++++|+.+.++++....
T Consensus 765 k~~~~~i~~lE~~~~d~~~~re~r-lkdl~keik~~k~~~e~~~~ 808 (1174)
T KOG0933|consen 765 KKCEDKISTLEKKMKDAKANRERR-LKDLEKEIKTAKQRAEESSK 808 (1174)
T ss_pred HHHHHHHHHHHHHHhHhhhhhHhH-HHHHHHHHHHHHHHHHHHHH
Confidence 5555554444444443 2445 77888888888888876544
No 68
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.18 E-value=8.8e-05 Score=88.16 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 545 ELEKRYRELTDLLYYKQTQLETMASEKA 572 (705)
Q Consensus 545 elE~rl~eLtE~L~eKQ~qlE~L~~Er~ 572 (705)
.+++|..-++.++.--..++.++..|-.
T Consensus 403 RLerq~~L~~kE~d~LR~~L~syd~e~~ 430 (722)
T PF05557_consen 403 RLERQKALATKERDYLRAQLKSYDKEET 430 (722)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3444444444444444445555444433
No 69
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.15 E-value=0.83 Score=53.06 Aligned_cols=103 Identities=15% Similarity=0.200 Sum_probs=48.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005259 275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA---RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSS 351 (705)
Q Consensus 275 a~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~---rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~r 351 (705)
.+++.||++-.+.....+..|+..++++-++....+. ++..|...-++.|+.....+. +..+ +..-.+.+.+.
T Consensus 220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~-y~~~---~~~k~~~~~~~ 295 (581)
T KOG0995|consen 220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQA-YVSQ---MKSKKQHMEKK 295 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHH-HHHH---HHhhhHHHHHH
Confidence 3456777777776666666666666666665543333 444444444444444444333 2211 22222234444
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005259 352 IDALKKQAALSEGNLASLQMNMESIMRNRE 381 (705)
Q Consensus 352 l~~Le~el~~~K~rleele~E~~rl~e~l~ 381 (705)
+..+..++..-...++.++.+++.|+-.+.
T Consensus 296 l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 296 LEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 70
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.11 E-value=1.1 Score=54.11 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVEL 423 (705)
Q Consensus 344 eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eL 423 (705)
.+++++......+.++..+|.++.++..+---+.++..+..++ +.+.+.... ++
T Consensus 411 ~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQ--------le~~~~s~~------------------~~ 464 (980)
T KOG0980|consen 411 LVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQ--------LESAEQSID------------------DV 464 (980)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHH------------------HH
Confidence 3667777888888888888888888888877777766665555 333332211 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259 424 EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (705)
Q Consensus 424 Eee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e 475 (705)
++.+..+..-+.++++.....-.+..+....++.|+.++..+..+++.++..
T Consensus 465 ~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 465 EEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666555555555555555555555555555555444443
No 71
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.10 E-value=0.96 Score=53.00 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 388 IQALREELASVERRAEEERAAHNAT 412 (705)
Q Consensus 388 lqSLE~eLkslq~~le~E~~aH~aT 412 (705)
+..+...|..+-..++.|..+++..
T Consensus 284 ~~~i~~~Id~Lyd~lekE~~A~~~v 308 (569)
T PRK04778 284 NEEIQERIDQLYDILEREVKARKYV 308 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666655544333
No 72
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.04 E-value=0.72 Score=52.08 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=30.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005259 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (705)
Q Consensus 278 ~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l 327 (705)
..+|++.++.++..+.+++..+.+-......+..+|..+...|..++...
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 66666666666666666666666555555666666666666655555444
No 73
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.03 E-value=0.15 Score=49.51 Aligned_cols=125 Identities=21% Similarity=0.284 Sum_probs=87.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005259 279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQ 358 (705)
Q Consensus 279 ~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~e 358 (705)
..++.....+.-++.++|.-+..++.+...|+..+..++..|...+..+..... .....+.|..++..|+.+
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~--------~~~~~E~l~rriq~LEee 88 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK--------RKSNAEQLNRRIQLLEEE 88 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------HHHhHHHHHhhHHHHHHH
Confidence 345555666666666777766666666666666666666666665555444443 222334788889999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNAT 412 (705)
Q Consensus 359 l~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aT 412 (705)
+.....++..+..-++.+--...+.+.. +..|+.+......+++.-...|..+
T Consensus 89 le~ae~~L~e~~ekl~e~d~~ae~~eRk-v~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 89 LEEAEKKLKETTEKLREADVKAEHFERK-VKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 9999999988888888888888888887 8888888777777777655555443
No 74
>PRK09039 hypothetical protein; Validated
Probab=97.01 E-value=0.21 Score=54.98 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=96.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005259 275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDA 354 (705)
Q Consensus 275 a~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~ 354 (705)
...-.++++.+..+..+++.|=+++.-.+.+...|+.++..++..+...+..+..+++.+. .+......++.++..
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~----~~~~~~~~~~~~~~~ 120 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA----ELAGAGAAAEGRAGE 120 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhcchHHHHHHH
Confidence 3456677777788888888888888888888888999999999988887777777776444 344445678888888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005259 355 LKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (705)
Q Consensus 355 Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l 402 (705)
+..++...+....+..-+...|...+..+..+ +.+++..|..++.+.
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-la~le~~L~~ae~~~ 167 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQ-LAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 88999999999999999999988888888777 777777777766554
No 75
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.00 E-value=1.1 Score=52.05 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=45.0
Q ss_pred CCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259 245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (705)
Q Consensus 245 k~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ 324 (705)
.+..++++++++...+. +.+.+..++.-|.+..++|+.....++.-+.+++.....+--+...|..++..-+.++...|
T Consensus 236 ~ie~l~~~n~~l~e~i~-e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq 314 (581)
T KOG0995|consen 236 EIEDLKKTNRELEEMIN-EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQ 314 (581)
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666 55555556666666666666666665555555555333333333344444444444444444
Q ss_pred HHHHHHH
Q 005259 325 SEVTKVE 331 (705)
Q Consensus 325 ~~l~q~e 331 (705)
.....++
T Consensus 315 ~~~d~Lk 321 (581)
T KOG0995|consen 315 KENDELK 321 (581)
T ss_pred HHHHHHH
Confidence 4444443
No 76
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.96 E-value=0.6 Score=55.08 Aligned_cols=82 Identities=13% Similarity=0.289 Sum_probs=50.5
Q ss_pred HHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQL 578 (705)
Q Consensus 499 EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qL 578 (705)
++..+|+..+.+...+...++...+|..+++.+...+ .-.-|=.||.+.+-.+--=+..|..+..+-..|+.++
T Consensus 448 ~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~------~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkei 521 (594)
T PF05667_consen 448 EIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV------NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEI 521 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455666678888888888887766543 2356778888888776544466666555555555555
Q ss_pred HHHHHHHH
Q 005259 579 EKEMNRLQ 586 (705)
Q Consensus 579 E~~~~~~~ 586 (705)
.-+..+++
T Consensus 522 N~l~gkL~ 529 (594)
T PF05667_consen 522 NSLTGKLD 529 (594)
T ss_pred HHHHHHHH
Confidence 54444444
No 77
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.82 E-value=1.6 Score=51.09 Aligned_cols=148 Identities=15% Similarity=0.217 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHhHH
Q 005259 386 RMIQALREELASVERRAEEERAAHNATKMAA---MEREVELEHRAAEASMALARIQRI--AD-ERTAKAGELEQKVAMLE 459 (705)
Q Consensus 386 eilqSLE~eLkslq~~le~E~~aH~aTk~ea---~~Re~eLEee~~eLseALaelQrk--Le-Ee~aea~eLeqQls~LE 459 (705)
..+..+..+|..+=..++.|..++....... ......+...+..+..-+..+... +. .+...+..+.+++..++
T Consensus 278 ~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~ 357 (560)
T PF06160_consen 278 EENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELE 357 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 3355555666666666766666544442211 111222222222222222222221 11 23344566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHH----HHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 005259 460 VECATLQQELQDMEARLKRGQKKSPEEANQAIQ----MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKR 533 (705)
Q Consensus 460 ~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~q----L~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~ 533 (705)
..+..+...+..-..-+..+..........+.+ ...+...|..++..=..++.++..+...+..++..++...-
T Consensus 358 ~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 358 KRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 666666665554444444443322222222211 22234445455544444556666667777777776655443
No 78
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.81 E-value=1.1 Score=48.89 Aligned_cols=202 Identities=18% Similarity=0.214 Sum_probs=102.4
Q ss_pred hHHHHHHHHHhhhhhcchHHH-HHHHHHhhhhHHHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 252 QLDEAQGLLKTTISTGQSKEA-RLARVCAGLSSRLQEYKSENAQL--------EELLVAERELSRSYEARIKQLEQELSV 322 (705)
Q Consensus 252 QLee~n~~LrsE~eal~~ke~-qLa~~~~RLrk~~~elks~~aqL--------Eell~el~e~~~~L~~rl~~LQaeL~~ 322 (705)
-|.+.++.||...-.++++.- .=--....|=|+++.+++....| |-+...++-+...|......|+..|.+
T Consensus 52 ~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~ 131 (310)
T PF09755_consen 52 HLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQ 131 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666433333311 11124556777777777776666 333334555666666677777777777
Q ss_pred HHHH-HHHHHHHHH----------HHHHhhhHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHhhh--------
Q 005259 323 YKSE-VTKVESNLA----------EALAAKNSEIETLVSSIDALK-KQAALSEGNLASLQMNMESIMRNREL-------- 382 (705)
Q Consensus 323 EQ~~-l~q~es~~~----------ealsak~~eie~Le~rl~~Le-~el~~~K~rleele~E~~rl~e~l~~-------- 382 (705)
+|+. +.++...+. ..+.....+.=+|+..+..=+ -=+..+-.+++++..+++.|+..+..
T Consensus 132 EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~ 211 (310)
T PF09755_consen 132 EQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSP 211 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Confidence 7754 233333222 111111122222222221111 11455556677777777777776662
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 383 ---------------TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAK 447 (705)
Q Consensus 383 ---------------~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~ae 447 (705)
.... +..|..+..-+++.+..-...|..-......-+..+-++| ..++++|..+..+
T Consensus 212 ~d~~~~~~~~Dt~e~~~sh-I~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN-------~rLqr~L~~E~er 283 (310)
T PF09755_consen 212 RDTVNVSEENDTAERLSSH-IRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREEN-------RRLQRKLQREVER 283 (310)
T ss_pred chHHhhcccCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 1122 3344444444444444433343333333333344444444 4567777777777
Q ss_pred HHHHHHHHHhHHHH
Q 005259 448 AGELEQKVAMLEVE 461 (705)
Q Consensus 448 a~eLeqQls~LE~e 461 (705)
...|.++++..|.-
T Consensus 284 real~R~lsesEss 297 (310)
T PF09755_consen 284 REALCRHLSESESS 297 (310)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766543
No 79
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=2.3 Score=52.15 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhh
Q 005259 513 KLSSLEAEVQKMRVEMAAMKRDA 535 (705)
Q Consensus 513 kl~s~E~elqkLr~e~~~~k~q~ 535 (705)
.+...-.++..|...+...+++|
T Consensus 426 ~l~~~~e~i~~l~~si~e~~~r~ 448 (1200)
T KOG0964|consen 426 ELKEKLEEIKELESSINETKGRM 448 (1200)
T ss_pred HHHHHHHHHHHHHhhHhhhhhHH
Confidence 33444445555555555545544
No 80
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=2 Score=51.34 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 424 EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (705)
Q Consensus 424 Eee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE 473 (705)
..+...+..++..+.++..+....+..|..++...+..+++++..+.+..
T Consensus 544 ~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~ 593 (698)
T KOG0978|consen 544 IKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELE 593 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666555555555555555555554444443333
No 81
>PRK11281 hypothetical protein; Provisional
Probab=96.71 E-value=3 Score=52.71 Aligned_cols=44 Identities=20% Similarity=0.116 Sum_probs=23.6
Q ss_pred hHhhhhhhhhhHhhh----cchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005259 640 KLLDSGAVRATRFLW----RYPIARIILLFYLVFVHLFLMYLLHRLQE 683 (705)
Q Consensus 640 ~~lDs~slr~g~fLR----RyP~ARl~vlvYmvlLHLWVm~VL~~~~~ 683 (705)
..++.++-++|.+-+ --|.|=+|.++|.+.+-||++++-+.+.+
T Consensus 522 ~~l~~~~~~ig~~~~D~~~~T~~al~~t~l~alp~~l~~~~~g~~~~~ 569 (1113)
T PRK11281 522 ARLQKLAADIGTLKRDSQLHTPKAILITLLLALPVTLIFLAVGLILLT 569 (1113)
T ss_pred HHHHHHHHhcCCcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666533 23555566666655555554444444444
No 82
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.56 E-value=0.0029 Score=75.46 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK 580 (705)
Q Consensus 546 lE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~ 580 (705)
+..++..|..++..-+..+..|..++..|..+|+.
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666665
No 83
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.54 E-value=3.5 Score=51.41 Aligned_cols=41 Identities=20% Similarity=0.141 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (705)
Q Consensus 547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~ 587 (705)
..+-..|.-+-..|-..|..|+.+...-..+|+...+.+.-
T Consensus 1695 ~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~ 1735 (1758)
T KOG0994|consen 1695 RTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAG 1735 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 34444555555555555666665555555555554443333
No 84
>PRK01156 chromosome segregation protein; Provisional
Probab=96.54 E-value=3.2 Score=50.89 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=7.8
Q ss_pred hhhhhhHhhhcchhH
Q 005259 645 GAVRATRFLWRYPIA 659 (705)
Q Consensus 645 ~slr~g~fLRRyP~A 659 (705)
+....+.++.--|++
T Consensus 822 l~~~~~~lilDEpt~ 836 (895)
T PRK01156 822 LNNDKSLLIMDEPTA 836 (895)
T ss_pred hccCCCeEEEeCCCC
Confidence 333445556666664
No 85
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.53 E-value=3.3 Score=50.93 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=20.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005259 359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (705)
Q Consensus 359 l~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~ 404 (705)
+.+++..+.-+-.+++++..+-+..-+. +..|+-+++.++...+.
T Consensus 274 i~ele~~l~~l~~ekeq~~a~~t~~~k~-kt~lel~~kdlq~~i~~ 318 (1200)
T KOG0964|consen 274 IKELENKLTNLREEKEQLKARETKISKK-KTKLELKIKDLQDQITG 318 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHhhh
Confidence 3333334444444444444444443333 44555556666655544
No 86
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.50 E-value=0.00066 Score=80.75 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 302 ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (705)
Q Consensus 302 l~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (705)
+++.+..|...+..|+.+|.....-..++.. |...+......+.+...+...+..++..++.++..++.+.+++...
T Consensus 337 Lee~N~~l~e~~~~LEeel~~~~~~~~qle~-~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e 413 (713)
T PF05622_consen 337 LEEDNAVLLETKAMLEEELKKARALKSQLEE-YKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEE 413 (713)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555556666677776554433333332 2222222222222333333334444444444444444444444433
No 87
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.48 E-value=2.7 Score=49.32 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (705)
Q Consensus 547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e 588 (705)
..++..+.......+..+..|..+-.....+|+.....+...
T Consensus 389 ~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i 430 (569)
T PRK04778 389 LKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI 430 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555555555555555544443
No 88
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.44 E-value=0.9 Score=47.90 Aligned_cols=102 Identities=22% Similarity=0.321 Sum_probs=52.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005259 276 RVCAGLSSRLQEYKSENAQLEELLVAEREL---SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (705)
Q Consensus 276 ~~~~RLrk~~~elks~~aqLEell~el~e~---~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl 352 (705)
++..+.......+.+..+.+|.++..+..+ ...|++.+.+++.++...+.-....+..+... +.. .++
T Consensus 21 rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v--~~~-------~e~ 91 (239)
T COG1579 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV--KDE-------REL 91 (239)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccH-------HHH
Confidence 355555556666666666666655543333 33344456666666555554444444433111 122 344
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
..|+.++...+.++..++.++..+++.+..+++.
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~ 125 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKE 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555666666666666666555555544
No 89
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.43 E-value=1.9 Score=47.04 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=71.6
Q ss_pred HHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 254 DEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESN 333 (705)
Q Consensus 254 ee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~ 333 (705)
..-|+.||.+.++...+-..|+.....|+...-.+.....+=|+- .+..|-.+|..|..+-...--.|.+.+.-
T Consensus 33 ~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~------isN~LlKkl~~l~keKe~L~~~~e~EEE~ 106 (310)
T PF09755_consen 33 QQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEF------ISNTLLKKLQQLKKEKETLALKYEQEEEF 106 (310)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334888888888888888888888888887777666666555553 45667777888777777776667776653
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhhHHHH
Q 005259 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN-MESIMRNRELTETR 386 (705)
Q Consensus 334 ~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E-~~rl~e~l~~~eke 386 (705)
+.. +|..++..+..+-..+...++.=++- ..+|+..+..++++
T Consensus 107 ltn----------~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e 150 (310)
T PF09755_consen 107 LTN----------DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKE 150 (310)
T ss_pred HHH----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 332 44444444444444444444332222 34444444444444
No 90
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.35 E-value=4.4 Score=50.32 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEK 580 (705)
Q Consensus 548 ~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~ 580 (705)
+.+.-|..++....+.++.+..|++++...|..
T Consensus 870 ~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl 902 (1141)
T KOG0018|consen 870 KELTKLDKEITSIESKIERKESERHNLLSKCKL 902 (1141)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhh
Confidence 345666677777778888888999988877765
No 91
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=1.5 Score=52.75 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=45.4
Q ss_pred CCCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005259 244 DPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERE 304 (705)
Q Consensus 244 ek~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e 304 (705)
|+.-..+-.+-.+.+.|..+.+.++.+...|......|++..+...+..++|.+.+..++-
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN 713 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344456677777777788888888888888888888888888888888886665444
No 92
>PRK01156 chromosome segregation protein; Provisional
Probab=96.28 E-value=4.4 Score=49.74 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=8.9
Q ss_pred hhhhHHHHHHHHHhhhhh
Q 005259 249 EQDQLDEAQGLLKTTIST 266 (705)
Q Consensus 249 lqkQLee~n~~LrsE~ea 266 (705)
....+.+....|+.+.+.
T Consensus 167 ~~~~~~~~~~~~~~ei~~ 184 (895)
T PRK01156 167 NYDKLKDVIDMLRAEISN 184 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555555555443
No 93
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.27 E-value=4.1 Score=49.18 Aligned_cols=331 Identities=18% Similarity=0.220 Sum_probs=174.7
Q ss_pred hHHHHHHH---HHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005259 252 QLDEAQGL---LKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT 328 (705)
Q Consensus 252 QLee~n~~---LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~ 328 (705)
++.++... +|.+++...+...+|......|++....+.....+|=+-+++.+.+-..|-..+..|+.+-...|-.+.
T Consensus 35 ~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs 114 (717)
T PF09730_consen 35 RILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVS 114 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 44444433 445566666667778888888888888888888888777777777777777777777777777777776
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------
Q 005259 329 KVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGN----LASLQMNMESIMRNRELTETRMIQALREELASV------ 398 (705)
Q Consensus 329 q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~r----leele~E~~rl~e~l~~~ekeilqSLE~eLksl------ 398 (705)
.+++... .-..++=+|.-|++++..|+.++...-.- ...+++-++.|+. |.+-+.+|+++|...
T Consensus 115 ~Lk~sQv-efE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~-----EReqk~~LrkEL~~~~~~~~~ 188 (717)
T PF09730_consen 115 VLKQSQV-EFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKS-----EREQKNALRKELDQHLNIESI 188 (717)
T ss_pred HHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCcccc
Confidence 6665222 11233444444444444444433322111 1112222222222 334456666665541
Q ss_pred ------HHHH-----------------H-HHHHHHH--H--------------------------------------HHH
Q 005259 399 ------ERRA-----------------E-EERAAHN--A--------------------------------------TKM 414 (705)
Q Consensus 399 ------q~~l-----------------e-~E~~aH~--a--------------------------------------Tk~ 414 (705)
.-.+ + .+...|- - --.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLfSEl~~~Eiq 268 (717)
T PF09730_consen 189 SYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLVSDLFSELNLSEIQ 268 (717)
T ss_pred ccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCcccchhhhhcchHHHH
Confidence 1111 0 0111110 0 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHcccCChH-------
Q 005259 415 AAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR--LKRGQKKSPE------- 485 (705)
Q Consensus 415 ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e--~~r~qek~~~------- 485 (705)
.+...+..++.++..|...|.+.|..|+.....+.....++..|-..+..++.-....+.. ..........
T Consensus 269 KL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye 348 (717)
T PF09730_consen 269 KLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYE 348 (717)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhh
Confidence 1112233346677888888888888888888777777777777766665555411101100 0111100000
Q ss_pred ------H------HHHHHHHHHHHHHHHHHHhhhHHHHh----hhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHH
Q 005259 486 ------E------ANQAIQMQAWQDEVERARQGQRDAEN----KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKR 549 (705)
Q Consensus 486 ------e------a~q~~qL~~Lk~EL~~~rq~qr~l~~----kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~r 549 (705)
+ ...+.+...|+.||..++.....+.. .....+.+++.|..++.......++ .......|+..
T Consensus 349 ~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re-~qeri~~LE~E 427 (717)
T PF09730_consen 349 VDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSRE-DQERISELEKE 427 (717)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHH
Confidence 0 00011233355555554443322221 1223345555555555443332221 12235788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 550 YRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (705)
Q Consensus 550 l~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~ 589 (705)
++.++...-+.+..|.....|..+.--.|-.+-+..=.++
T Consensus 428 Lr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cN 467 (717)
T PF09730_consen 428 LRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCN 467 (717)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 8888888888888888888888877777766655444443
No 94
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.22 E-value=1.5 Score=46.21 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHcc
Q 005259 463 ATLQQELQDMEARLKRGQ 480 (705)
Q Consensus 463 kqLkQeLq~lE~e~~r~q 480 (705)
..++++...+..+...+.
T Consensus 152 ~~i~e~~~~~~~~~~~L~ 169 (239)
T COG1579 152 AEIREEGQELSSKREELK 169 (239)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444443333333
No 95
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.20 E-value=1.8 Score=44.31 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=72.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005259 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK---SEVTKVESNLAEALAAKNSEIETLVS 350 (705)
Q Consensus 274 La~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ---~~l~q~es~~~ealsak~~eie~Le~ 350 (705)
|.....||......++-.+...|+.+..+.+-+..|...+..+|+.+...+ +++..++ .-....+++..-|..
T Consensus 13 L~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk----~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 13 LQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLK----TLAKSLEEENRSLLA 88 (193)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 344455555555555556666666666666666666666666665555442 2222222 222233444446666
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005259 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (705)
Q Consensus 351 rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l 402 (705)
....++++...+-..+..+++++..+...+.-+.++ ...|-.+-.+|+..+
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~-~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKR-SKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH-HHHHHHhhHHHHHHH
Confidence 777777778888888888888888887777776666 444444444444443
No 96
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.08 E-value=5 Score=48.47 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccC
Q 005259 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK 482 (705)
Q Consensus 446 aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek 482 (705)
.++.-|++|+..++.+-..|-..|+..+.++...+..
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~a 301 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGA 301 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666555555543
No 97
>PF13514 AAA_27: AAA domain
Probab=96.04 E-value=6.8 Score=49.58 Aligned_cols=156 Identities=25% Similarity=0.295 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHH--HHH-
Q 005259 419 REVELEHRAAEASMALARIQRIADERTAKA-----GELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEA--NQA- 490 (705)
Q Consensus 419 Re~eLEee~~eLseALaelQrkLeEe~aea-----~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea--~q~- 490 (705)
+...++.+...+...+..++..+..-...+ .++..... .-..+..+..++..++..+...-.....+. ..+
T Consensus 809 ~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~-~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~ 887 (1111)
T PF13514_consen 809 QLEELEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEE-RAEERRELREELEDLERQLERQADGLDLEELEEELE 887 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhh
Confidence 344444444444444444444444333221 23332222 223455666666666666644332221111 001
Q ss_pred -HHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 491 -IQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS 569 (705)
Q Consensus 491 -~qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~ 569 (705)
..+..+..++..+......+..++..+..++..++.++..+.+. ..+..+..++......++.+..
T Consensus 888 ~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~-------------~~~a~l~~e~e~~~a~l~~~~~ 954 (1111)
T PF13514_consen 888 ELDPDELEAELEELEEELEELEEELEELQEERAELEQELEALEGD-------------DDAAELEQEREEAEAELEELAE 954 (1111)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------chHHHHHHHHHHHHHHHHHHHH
Confidence 01222444444444444444444444444444444444433321 1233444444444455555544
Q ss_pred HHHHHH---HHHHHHHHHHHHH
Q 005259 570 EKAAAE---FQLEKEMNRLQEV 588 (705)
Q Consensus 570 Er~sL~---~qLE~~~~~~~~e 588 (705)
+..++. .=|+.+..+|+..
T Consensus 955 ~~~~~~la~~lL~~a~~~~r~~ 976 (1111)
T PF13514_consen 955 EWAALRLAAELLEEAIERYREE 976 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 433333 3344555555554
No 98
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.03 E-value=2.1 Score=43.75 Aligned_cols=128 Identities=19% Similarity=0.237 Sum_probs=63.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHH
Q 005259 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM-------IQALREELASVERRAEE 404 (705)
Q Consensus 332 s~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekei-------lqSLE~eLkslq~~le~ 404 (705)
+++-.-+...++++..|..++...+......+.++-+...++.++.+.+.++.+=. -..|...|..++..++
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~- 135 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQ- 135 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH-
Confidence 34444445555666666666666666666666666666666555555555421100 0112222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 405 ERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (705)
Q Consensus 405 E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE 473 (705)
+...+...|+... .-+-....+.+..+..+..++...+..+..++..+++.|...+
T Consensus 136 ----------~~~~ki~~Lek~l---eL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 136 ----------EKEKKIQELEKQL---ELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred ----------HHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112223332211 2222445556666666666777777777777777777665443
No 99
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.99 E-value=2.2 Score=43.63 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=35.0
Q ss_pred CCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259 245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (705)
Q Consensus 245 k~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ 324 (705)
|++.|+.++.+++..|..=. -..-=|..+..|-.+++..+.-..+.|-.++ .....++..|...|...+
T Consensus 13 ki~~L~n~l~elq~~l~~l~----~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll-------~~h~eEvr~Lr~~LR~~q 81 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELR----KENKTLKQLQKRQEKALQKYEDTEAELPQLL-------QRHNEEVRVLRERLRKSQ 81 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 34556666655555543321 1122344455555555554444444444433 333344444444444444
Q ss_pred HHHHHHHH
Q 005259 325 SEVTKVES 332 (705)
Q Consensus 325 ~~l~q~es 332 (705)
......+.
T Consensus 82 ~~~r~~~~ 89 (194)
T PF15619_consen 82 EQERELER 89 (194)
T ss_pred HHHHHHHH
Confidence 44443333
No 100
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.97 E-value=1.5 Score=42.85 Aligned_cols=96 Identities=21% Similarity=0.271 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005259 292 NAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM 371 (705)
Q Consensus 292 ~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~ 371 (705)
.-..+..|.+-+.....|++++..|+++|...+..+..+.-. ......++..|+..+..+..++..+...+..+-.
T Consensus 5 ~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~d----aEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 5 FLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILD----AENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777788889999999999999998887776642 2335566666777766666666666666666666
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 005259 372 NMESIMRNRELTETRMIQALR 392 (705)
Q Consensus 372 E~~rl~e~l~~~ekeilqSLE 392 (705)
++..+...+.....+ +..|+
T Consensus 81 Ek~~L~k~lq~~q~k-v~eLE 100 (140)
T PF10473_consen 81 EKENLDKELQKKQEK-VSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHH-HHHHH
Confidence 666665555554444 44444
No 101
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.96 E-value=3.7 Score=46.65 Aligned_cols=89 Identities=11% Similarity=0.041 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005259 388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467 (705)
Q Consensus 388 lqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQ 467 (705)
+.++..+|+-+.+.+..+...+..+-..+..|...+|.+...+.+++.-+.+++.+.+.+++++..++.... +...++
T Consensus 208 l~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~--~l~~ke 285 (554)
T KOG4677|consen 208 LRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFR--FLDRKE 285 (554)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHH
Confidence 566667788888888888777778888899999999999999999999999999999999999999887755 556778
Q ss_pred HHHHHHHHHHH
Q 005259 468 ELQDMEARLKR 478 (705)
Q Consensus 468 eLq~lE~e~~r 478 (705)
+|-+....-.+
T Consensus 286 eL~~s~~~e~~ 296 (554)
T KOG4677|consen 286 ELALSHYREHL 296 (554)
T ss_pred HHHHHHHHHhh
Confidence 87655444333
No 102
>PRK09039 hypothetical protein; Validated
Probab=95.95 E-value=1.8 Score=47.87 Aligned_cols=136 Identities=17% Similarity=0.171 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHHHHHHhhhHHHHhhh
Q 005259 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKL 514 (705)
Q Consensus 435 aelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl 514 (705)
+.+-..+.-+..+...++..+..+..++..++.+-.+++..+........... .++..+..+|...+...
T Consensus 63 a~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~---~~~~~l~~~L~~~k~~~------- 132 (343)
T PRK09039 63 AELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAE---GRAGELAQELDSEKQVS------- 132 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHH---HHHHHHHHHHHHHHHHH-------
Confidence 33444444455555555555555555555555444444443332111000111 12222344444333332
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 515 SSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (705)
Q Consensus 515 ~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e 588 (705)
.+...++..|+.++..++.|. ..++..|..+..+..+.+.+++.|..+.+....+--.-+.+|+++
T Consensus 133 se~~~~V~~L~~qI~aLr~Ql--------a~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~ 198 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQL--------AALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSE 198 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 233444455555554444332 444555666666666666677776666666654422233455555
No 103
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.89 E-value=6.4 Score=48.08 Aligned_cols=92 Identities=18% Similarity=0.167 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005259 390 ALREELASVERRAEEERAAHNATKMAAMEREVELEHRA---AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ 466 (705)
Q Consensus 390 SLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~---~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLk 466 (705)
..+.....++..+..-...|.......-+....++-+. ..+.+-..++.+.+.+.......++.+.....--+++++
T Consensus 421 ~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~ 500 (980)
T KOG0980|consen 421 AAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLR 500 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344555566666666667666665555555554433 445555566666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHccc
Q 005259 467 QELQDMEARLKRGQK 481 (705)
Q Consensus 467 QeLq~lE~e~~r~qe 481 (705)
+++..+..++.+++.
T Consensus 501 ~El~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 501 QELALLLIELEELQR 515 (980)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666555555555553
No 104
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.87 E-value=4.4 Score=46.02 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (705)
Q Consensus 284 ~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~ 322 (705)
++....+.+++++..+...++....|+..|..++.++..
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~ 77 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS 77 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445554444444444444444444444433
No 105
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.73 E-value=1.2 Score=42.49 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEAS 431 (705)
Q Consensus 352 l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLs 431 (705)
+..++.++..++..++.+......++.++....+. .+.++..|+.|...|..+-. .+..+..+...+-
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~--------a~~Aq~~YE~El~~Ha~~~~----~L~~lr~e~~~~~ 72 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKI--------AQEAQQKYERELVKHAEDIK----ELQQLREELQELQ 72 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHH
Confidence 34444444444444444444444444444333333 77788888888888766632 3333333333333
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 432 MALARIQRIADERTAKA----GELEQKVAMLEVECATLQQELQDME 473 (705)
Q Consensus 432 eALaelQrkLeEe~aea----~eLeqQls~LE~elkqLkQeLq~lE 473 (705)
..+..+....+.....+ ..|..+-.+|+.++..++.+++++.
T Consensus 73 ~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 73 QEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333 2344444444444445554444444
No 106
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.70 E-value=10 Score=49.10 Aligned_cols=8 Identities=25% Similarity=0.534 Sum_probs=5.5
Q ss_pred CCCCCccc
Q 005259 150 ATPNGEIL 157 (705)
Q Consensus 150 ~~~~~~~~ 157 (705)
++|+|-++
T Consensus 636 v~p~~~~~ 643 (1353)
T TIGR02680 636 VTADGTLQ 643 (1353)
T ss_pred eCCCcccc
Confidence 67777764
No 107
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.65 E-value=6.8 Score=46.65 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 291 ENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLA 335 (705)
Q Consensus 291 ~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ 335 (705)
+...||..+..+......+..++..++.++...+..+...+..+.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~ 254 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR 254 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433344444444444455555555444444444444333
No 108
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.49 E-value=1.7 Score=41.49 Aligned_cols=123 Identities=16% Similarity=0.215 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhH
Q 005259 438 QRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSL 517 (705)
Q Consensus 438 QrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~ 517 (705)
+..+............++..+..|++........++..|.+...+-... +..|..++.++...+.....++..+...
T Consensus 9 ~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~---~~~L~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 9 QSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED---IKELQQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455555555555555555555555555555554222222 2345555666655555444444444444
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 518 EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE 581 (705)
Q Consensus 518 E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~ 581 (705)
...+...+..| +.+=..|..++.+.+.+++.|.....-|.-|||.+
T Consensus 86 ~~~l~~~e~sw------------------~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 86 KAELEESEASW------------------EEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHhH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444 33446677777777788888888888888888753
No 109
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.41 E-value=4.8 Score=45.44 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 005259 286 QEYKSENAQLEELLVAERE-LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEG 364 (705)
Q Consensus 286 ~elks~~aqLEell~el~e-~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~ 364 (705)
..++-+.-.||.++-..++ -..-|.+++..||.+-...|..+.|+..+...-..+.+.+.+.| +..+=.
T Consensus 139 ~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEal----------vN~LwK 208 (552)
T KOG2129|consen 139 KQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEAL----------VNSLWK 208 (552)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHH----------HHHHHH
Confidence 3333334445554443333 24556667777777777777777777765552222222222222 455667
Q ss_pred HHHHHHHHHHHHHHHhhh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 365 NLASLQMNMESIMRNREL-----------------------TETRMIQALREELASVERRAEEERAAHNATKMAAMEREV 421 (705)
Q Consensus 365 rleele~E~~rl~e~l~~-----------------------~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~ 421 (705)
++++++.+++.|+.+++. .++.+++-|+.++.-++..+..-...|..--++....++
T Consensus 209 rmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~ 288 (552)
T KOG2129|consen 209 RMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEV 288 (552)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888888888887754 134444555545444444444333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVA 456 (705)
Q Consensus 422 eLEee~~eLseALaelQrkLeEe~aea~eLeqQls 456 (705)
.+.+++ ..+|++|..+..+-.-|.++++
T Consensus 289 ~~reen-------~rlQrkL~~e~erRealcr~ls 316 (552)
T KOG2129|consen 289 DHREEN-------ERLQRKLINELERREALCRMLS 316 (552)
T ss_pred hHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 444444 4556666666555444444433
No 110
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.28 E-value=1.8 Score=47.23 Aligned_cols=123 Identities=28% Similarity=0.343 Sum_probs=80.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005259 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (705)
Q Consensus 273 qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl 352 (705)
-+.-++..|.+....++.-.+.|...+..+.+..-.+..+...|..++..++........ --..++..+..++
T Consensus 146 ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~-------~D~~eL~~lr~eL 218 (325)
T PF08317_consen 146 LLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIES-------CDQEELEALRQEL 218 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------cCHHHHHHHHHHH
Confidence 344466677777777777777777766666666666667777777777666654444332 1234555666666
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005259 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (705)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le 403 (705)
..+..++...+..+.+++.++..+...+..+..+ ++.+..+|+.++.-.+
T Consensus 219 ~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~-k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 219 AEQKEEIEAKKKELAELQEELEELEEKIEELEEQ-KQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 6666677777777777777777777777666666 6666666666665544
No 111
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.19 E-value=6.2 Score=43.34 Aligned_cols=7 Identities=0% Similarity=-0.220 Sum_probs=2.7
Q ss_pred CCCCchh
Q 005259 243 DDPPTKE 249 (705)
Q Consensus 243 ~ek~~~l 249 (705)
.+.+..+
T Consensus 68 G~~L~~l 74 (423)
T TIGR01843 68 GQVLVEL 74 (423)
T ss_pred CCeEEEE
Confidence 3333333
No 112
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=8.5 Score=44.93 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAE 429 (705)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~e 429 (705)
.+|-.|+.+++.++..+...++|++++...+++.-.- .+.++.+ +.++.-|+..++-........+.+||++|..
T Consensus 107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~-~~~~E~q----R~rlr~elKe~KfRE~RllseYSELEEENIs 181 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKES-NAAVEDQ----RRRLRDELKEYKFREARLLSEYSELEEENIS 181 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 5788888899999999999999999988888874111 2333322 3344445566666666677789999999966
Q ss_pred HHHHHHHH
Q 005259 430 ASMALARI 437 (705)
Q Consensus 430 LseALael 437 (705)
|...++.+
T Consensus 182 LQKqVs~L 189 (772)
T KOG0999|consen 182 LQKQVSNL 189 (772)
T ss_pred HHHHHHHH
Confidence 66555444
No 113
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.07 E-value=5.1 Score=45.37 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=100.3
Q ss_pred hhhHHhhhhcCCCCchhhhhHHHHHHHHHhh----hhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005259 233 NKRKQQALKADDPPTKEQDQLDEAQGLLKTT----ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRS 308 (705)
Q Consensus 233 ~~~~~~~~~~~ek~~~lqkQLee~n~~LrsE----~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~ 308 (705)
-+.+.|+..|.+.+.-.++.-.|+-.++--+ ++.+++++.||.....+|+.-..-+++....|+.-.++..+..-.
T Consensus 264 Eq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~ 343 (502)
T KOG0982|consen 264 EQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEA 343 (502)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 5678888899999888888888888777665 588999999999999999999999999999999987777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHH
Q 005259 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE--------GNLASLQMNMESIMRN 379 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K--------~rleele~E~~rl~e~ 379 (705)
+..++...|....+.=..+.+-+. .-.+-...|++|-..+..++....... .|+.+++.+.+++.+.
T Consensus 344 lrlql~~eq~l~~rm~d~Lrrfq~----ekeatqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~ 418 (502)
T KOG0982|consen 344 LRLQLICEQKLRVRMNDILRRFQE----EKEATQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQP 418 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccc
Confidence 777777776665555554444333 222334455555544444443322222 5666666666665543
No 114
>PF14992 TMCO5: TMCO5 family
Probab=94.97 E-value=6.6 Score=42.44 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005259 367 ASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (705)
Q Consensus 367 eele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~ 404 (705)
.++-+.+..+..++...|.. +++|+.++.-.-..++.
T Consensus 14 Q~ldE~Nq~lL~ki~~~E~~-iq~Le~Eit~~~~~~~~ 50 (280)
T PF14992_consen 14 QRLDEANQSLLQKIQEKEGA-IQSLEREITKMDHIADR 50 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccccCc
Confidence 33444455555555555555 66666665555444433
No 115
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.96 E-value=11 Score=45.09 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 409 HNATKMAAMEREVELEHRAAEASMALARIQRIADERTA 446 (705)
Q Consensus 409 H~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~a 446 (705)
|.....++....++||++...-+.--+.++..|+...+
T Consensus 329 h~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~A 366 (739)
T PF07111_consen 329 HRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAA 366 (739)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44444444455666655443333334444444444443
No 116
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.92 E-value=11 Score=44.66 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=41.0
Q ss_pred HhHhhhhhhhhhHhhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005259 639 AKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQA 685 (705)
Q Consensus 639 a~~lDs~slr~g~fLRRyP~ARl~vlvYmvlLHLWVm~VL~~~~~~~ 685 (705)
.+.+|.+.+-+|+|+-.+-++|.+||||+|+||..||+||+ +-+.+
T Consensus 575 l~~~~~~~~s~~r~~l~nk~~r~~~~~y~i~lh~~v~~~l~-~~~~s 620 (629)
T KOG0963|consen 575 LGSFERITLSLGRTLLFNKMTRTLFFFYTIGLHLLVFIVLY-LGAAS 620 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Confidence 35678999999999999999999999999999999999999 55543
No 117
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.86 E-value=5.4 Score=40.93 Aligned_cols=95 Identities=15% Similarity=0.191 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005259 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (705)
Q Consensus 281 Lrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~ 360 (705)
+++......+.+..+...+..+.+-...++..+..|+..|.. -+. ....|...+..+..++..+..+.-+..
T Consensus 39 mkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~-------y~k-dK~~L~~~k~rl~~~ek~l~~Lk~e~e 110 (201)
T PF13851_consen 39 MKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN-------YEK-DKQSLQNLKARLKELEKELKDLKWEHE 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444445555555555443 332 222344455666677788888888888
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhH
Q 005259 361 LSEGNLASLQMNMESIMRNRELT 383 (705)
Q Consensus 361 ~~K~rleele~E~~rl~e~l~~~ 383 (705)
.+..+..+++.+.+.|....+..
T Consensus 111 vL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 111 VLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777763
No 118
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.80 E-value=3.3 Score=45.25 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=11.3
Q ss_pred cCCCCCCcccccccccccCccCc
Q 005259 115 ERDAPSIPLTEQSKDMSKHDADR 137 (705)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~ 137 (705)
+.|.+.|.|...=++++-+--|+
T Consensus 8 ~~~~~~isL~~FL~~~~I~F~dD 30 (325)
T PF08317_consen 8 DEDYEPISLQDFLNMTGIRFYDD 30 (325)
T ss_pred cCCCCCcCHHHHHHHhCceeCCC
Confidence 44555555555555544444333
No 119
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.78 E-value=0.26 Score=49.87 Aligned_cols=106 Identities=25% Similarity=0.313 Sum_probs=43.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 005259 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA-------RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEI 345 (705)
Q Consensus 273 qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~-------rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~ei 345 (705)
.+.....+|++.++++.+....+...|..+......++. +|..|+.++...+..+..... .+..++..+
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~----~l~ek~k~~ 146 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEE----ELKEKNKAN 146 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 344445556666666666655555555444444333333 444444444444444444333 444567777
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (705)
Q Consensus 346 e~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (705)
+.|.+++.+|+-++..+..++.+++.|++.|-++.-.
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888888888888887777666544
No 120
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=94.69 E-value=6.6 Score=41.15 Aligned_cols=127 Identities=20% Similarity=0.302 Sum_probs=75.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005259 272 ARLARVCAGLSSRLQEYKSENAQLEELLVAEREL--------SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNS 343 (705)
Q Consensus 272 ~qLa~~~~RLrk~~~elks~~aqLEell~el~e~--------~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~ 343 (705)
.++..-...+...+..+..++..|+..+...... ...|...+..|...+..++..+...+..+..+
T Consensus 81 ~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~kr------ 154 (247)
T PF06705_consen 81 NQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKR------ 154 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 4444555666667777777777777766655543 44566677777777777777766666655533
Q ss_pred HHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 344 EIETLVSSIDALKKQA----ALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (705)
Q Consensus 344 eie~Le~rl~~Le~el----~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~a 408 (705)
|......+...+ ..-...+..+..+.+.+...............-.+|++++.++..|..+
T Consensus 155 ----l~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~ 219 (247)
T PF06705_consen 155 ----LEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQE 219 (247)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333333 3333445555555555554444445553444668899999998887765
No 121
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.68 E-value=9.4 Score=42.89 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 005259 285 LQEYKSENAQLEELLV 300 (705)
Q Consensus 285 ~~elks~~aqLEell~ 300 (705)
...+.+-+-+|++...
T Consensus 66 ~~~lr~gVfqlddi~~ 81 (499)
T COG4372 66 NRNLRSGVFQLDDIRP 81 (499)
T ss_pred hhhHHhhhhhHHHHHH
Confidence 3455566666666433
No 122
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.61 E-value=17 Score=45.50 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=20.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005259 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (705)
Q Consensus 333 ~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~ 374 (705)
.+...+++.++++..+..++..-+.++...+....+.-.+..
T Consensus 231 k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~ 272 (1141)
T KOG0018|consen 231 KANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQ 272 (1141)
T ss_pred hhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555544444444433
No 123
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.54 E-value=0.01 Score=70.91 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 544 MELEKRYRELTDLLYYKQTQLETMAS 569 (705)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~ 569 (705)
..|+..++...+.+..-+.+++.+..
T Consensus 498 ~~Le~~~~~~~~~~~~lq~qle~lq~ 523 (713)
T PF05622_consen 498 EKLEEENREANEKILELQSQLEELQK 523 (713)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554443
No 124
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.51 E-value=6.6 Score=40.37 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 541 EEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (705)
Q Consensus 541 q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e 588 (705)
|..-.|+..|+.|++.|-+-.+..+-+..-...|....+++.-++...
T Consensus 137 q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~ 184 (205)
T KOG1003|consen 137 QKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEA 184 (205)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHH
Confidence 334678888899999888888777777776667666666666554443
No 125
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.40 E-value=7.2 Score=40.33 Aligned_cols=154 Identities=17% Similarity=0.216 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005259 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAER---ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE 346 (705)
Q Consensus 270 ke~qLa~~~~RLrk~~~elks~~aqLEell~el~---e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie 346 (705)
|.+.++-++..|++...++..+...+=.+=+.++ .........+..|+..+..-.-++..- ...+..+.++++
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~c----e~ELqr~~~Ea~ 83 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVC----ENELQRKKNEAE 83 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHh----HHHHHHHhCHHH
Confidence 5566777888888888777766443332211111 112222223333333222211111111 122223344444
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQ---MNMESIMRNRELT-----ETRMIQALREELASVERRAEEERAAHNATKMAAME 418 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele---~E~~rl~e~l~~~-----ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~ 418 (705)
-|...+..++.++..++..+..+- .+...+...-... ....+.+|..++..++..+..|...+......|..
T Consensus 84 lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ 163 (202)
T PF06818_consen 84 LLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQ 163 (202)
T ss_pred HhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455555555555555555554441 1110000000000 01125556666677777766666655444444444
Q ss_pred HHHHHHHHH
Q 005259 419 REVELEHRA 427 (705)
Q Consensus 419 Re~eLEee~ 427 (705)
-=..+.+++
T Consensus 164 ER~~W~eEK 172 (202)
T PF06818_consen 164 ERRTWQEEK 172 (202)
T ss_pred HHHHHHHHH
Confidence 434444444
No 126
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.39 E-value=9.5 Score=41.70 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=40.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHH
Q 005259 454 KVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 530 (705)
Q Consensus 454 Qls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~ 530 (705)
++..+-.....|+..|..|-......+..+.-.. .-..+++.|+... .-++..+|.+...++..|..
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSN---e~F~tfk~Emekm-------~Kk~kklEKE~~~~k~k~e~ 269 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSN---EVFETFKKEMEKM-------SKKIKKLEKENQTWKSKWEK 269 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 6666666667777777777766666653111111 1123466666543 34556688888888888855
No 127
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.37 E-value=1.8 Score=46.43 Aligned_cols=55 Identities=29% Similarity=0.334 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 005259 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRV 597 (705)
Q Consensus 543 ~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~~~~~sr~ 597 (705)
+..|++.-.-|+-.|.-|..++..|+.-.++-..++++++..+.....+++++..
T Consensus 76 c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 76 CENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777888888888888888888888888887766666666666543
No 128
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.32 E-value=9.9 Score=41.62 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=11.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhH
Q 005259 360 ALSEGNLASLQMNMESIMRNRELT 383 (705)
Q Consensus 360 ~~~K~rleele~E~~rl~e~l~~~ 383 (705)
..+..++..+++||..|..+.+++
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L 186 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQL 186 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555555555544
No 129
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.32 E-value=12 Score=42.68 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005259 364 GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (705)
Q Consensus 364 ~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le 403 (705)
.++.+++.++..+.....+..-. +..++.+|..++..+.
T Consensus 254 ~~l~~l~~~l~~l~~~y~~~hP~-v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 254 GRIEALEKQLDALRLRYTDKHPD-VIATKREIAQLEEQKE 292 (498)
T ss_pred HHHHHHHHHHHHHHHHhcccChH-HHHHHHHHHHHHHHHH
Confidence 33333444433333333332222 3333344444444443
No 130
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.27 E-value=16 Score=43.85 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=30.8
Q ss_pred HHHHHHHhHhhhhhhhhhHhhhcchhHHHHHHHHHHHH
Q 005259 633 VQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFV 670 (705)
Q Consensus 633 ~~vk~Aa~~lDs~slr~g~fLRRyP~ARl~vlvYmvlL 670 (705)
-.|..|+.-|-+.+.|++...||-++.|-++.--+++.
T Consensus 422 a~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Ala 459 (739)
T PF07111_consen 422 AKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALA 459 (739)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHH
Confidence 35788888888999999999999999888776666543
No 131
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.22 E-value=10 Score=41.43 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=73.3
Q ss_pred HHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 258 GLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA 337 (705)
Q Consensus 258 ~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ea 337 (705)
+.+..+...+.-+-.+|......++..+.-.......||.++|+++-..+.+......+..+-.. .+..+.+.|...
T Consensus 39 k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~---kR~el~~kFq~~ 115 (309)
T PF09728_consen 39 KRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEE---KRKELSEKFQAT 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33444444444555667777777777777777888899999999888888888876666555433 334455566666
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005259 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (705)
Q Consensus 338 lsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~ 374 (705)
+......|+.-......+..+-..+..++..+.++-+
T Consensus 116 L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 116 LKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655555555566666666666655555533
No 132
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.05 E-value=8.2 Score=39.65 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 497 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572 (705)
Q Consensus 497 k~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~ 572 (705)
+.+|..++...+.+..++..++.+-..|...-...-...-.=..-....|++++..|++.|..+..++.++..-.+
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~n 174 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAAN 174 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444433344444455555555555544332221110001122578899999999999999999988877443
No 133
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.97 E-value=11 Score=40.96 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 562 TQLETMASEKAAAEFQLEKEMNRLQE 587 (705)
Q Consensus 562 ~qlE~L~~Er~sL~~qLE~~~~~~~~ 587 (705)
..+-.|.+|.--|+-||+.+-.+++.
T Consensus 221 ERL~QlqsEN~LLrQQLddA~~K~~~ 246 (305)
T PF14915_consen 221 ERLSQLQSENMLLRQQLDDAHNKADN 246 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666665554
No 134
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.89 E-value=18 Score=43.05 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (705)
Q Consensus 548 ~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (705)
..+|+.=+.|+..=...-.+..|..-|.-|++...
T Consensus 557 a~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e~ 591 (594)
T PF05667_consen 557 ASLHENCSQLIETVEETGTISREIRDLEEQIDTES 591 (594)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 34566666667666666667777777777766543
No 135
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.89 E-value=20 Score=43.42 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 559 YKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (705)
Q Consensus 559 eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~ 589 (705)
.++.++..|+.|....+-.++.+..++.+..
T Consensus 373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 373 EQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777776654
No 136
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=93.83 E-value=27 Score=44.81 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 005259 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ 561 (705)
Q Consensus 493 L~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ 561 (705)
++.+..|+..+..+. +.+.+.+...+..+|..+.......-. .--....+|+.++..++.+|.+++
T Consensus 1017 ~~e~~re~~~ld~Qi--~~~~~~~~~ee~~~L~~~~~~l~se~~-~~lg~~ke~e~~i~~~k~eL~~~~ 1082 (1294)
T KOG0962|consen 1017 LKELERELSELDKQI--LEADIKSVKEERVKLEEEREKLSSEKN-LLLGEMKQYESQIKKLKQELREKD 1082 (1294)
T ss_pred HHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHhhhHhh-HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444555555554433 334456666666677666644331110 011235889999999999999777
No 137
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.74 E-value=16 Score=41.82 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 558 YYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (705)
Q Consensus 558 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~ 589 (705)
-.++.++..|..+....+...+.+..++.+..
T Consensus 351 ~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 351 PEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777777666666543
No 138
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.54 E-value=1.1 Score=46.22 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 332 s~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
.++.+.+...+..+.+|..+...|.+++..++.+++.++.+++.+++..
T Consensus 121 ~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 121 AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555556777777777777777777777666666666544
No 139
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.51 E-value=26 Score=43.56 Aligned_cols=12 Identities=17% Similarity=0.219 Sum_probs=4.9
Q ss_pred CchhhhhHHHHH
Q 005259 246 PTKEQDQLDEAQ 257 (705)
Q Consensus 246 ~~~lqkQLee~n 257 (705)
+..+..++.++.
T Consensus 234 ~e~l~~~~~el~ 245 (908)
T COG0419 234 IEALEERLAELE 245 (908)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 140
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.46 E-value=23 Score=42.85 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=17.3
Q ss_pred Ccchhhhhhhhccccccccc-ccccc
Q 005259 88 DTATLAVEKETITTGKTQKN-GEQQQ 112 (705)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~-~~~~~ 112 (705)
+...+.+|.+.|.|..++.- .+++.
T Consensus 70 ~~~~v~tqieiL~Sr~v~~~VV~~L~ 95 (754)
T TIGR01005 70 DETGVATQVEILSSNEILKQVVDKLG 95 (754)
T ss_pred cHHHHHHHHHHHccHHHHHHHHHHcC
Confidence 44567888899999988854 44443
No 141
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.41 E-value=14 Score=40.26 Aligned_cols=168 Identities=14% Similarity=0.145 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH--
Q 005259 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT-- 383 (705)
Q Consensus 306 ~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~-- 383 (705)
..++..+...|+..|.---+.+++.-..|. .++..|..+.+.|..++...|..=+.++.++.+..-++..-
T Consensus 33 iei~Kekn~~Lqk~lKLneE~ltkTi~qy~-------~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~ 105 (305)
T PF14915_consen 33 IEILKEKNDDLQKSLKLNEETLTKTIFQYN-------GQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQ 105 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-------hhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555666665543343444433333 34445555566666666666666666666666555555441
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhH
Q 005259 384 -ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKA----GELEQKVAML 458 (705)
Q Consensus 384 -ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea----~eLeqQls~L 458 (705)
..+...+.+ .++-++..+...|-..+....-....|...|..|++-|..++.++.--..+. +.|+++--.+
T Consensus 106 d~dqsq~skr----dlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~l 181 (305)
T PF14915_consen 106 DHDQSQTSKR----DLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLAL 181 (305)
T ss_pred hHHHHHhhHH----HHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1111222222323333333333455566677777777777777665544333 5566654444
Q ss_pred HH---HHHHHHHHHHHHHHHHHHcccCCh
Q 005259 459 EV---ECATLQQELQDMEARLKRGQKKSP 484 (705)
Q Consensus 459 E~---elkqLkQeLq~lE~e~~r~qek~~ 484 (705)
|. ++.+.+..+..++..+...+.++.
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~ 210 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVN 210 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33 455555555555555555544333
No 142
>PF13514 AAA_27: AAA domain
Probab=93.35 E-value=30 Score=43.93 Aligned_cols=139 Identities=20% Similarity=0.261 Sum_probs=76.3
Q ss_pred CCCCchhhhhHHHHHHHHHhhh------hhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH------HHHHH-----
Q 005259 243 DDPPTKEQDQLDEAQGLLKTTI------STGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV------AEREL----- 305 (705)
Q Consensus 243 ~ek~~~lqkQLee~n~~LrsE~------eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~------el~e~----- 305 (705)
+-.+|++-++++++.+.++.-. ..+...-.++......|+.....+..+...||.+.+ +.+..
T Consensus 149 ~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~ 228 (1111)
T PF13514_consen 149 KPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELA 228 (1111)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3467888889999988888773 223333444555556666666667777777766544 22222
Q ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHH---HHHHHHHHHHHHH
Q 005259 306 ---------------SRSYEARIKQLEQELSVYKSEVTKVESNLA-----EALAAKNSEIETLV---SSIDALKKQAALS 362 (705)
Q Consensus 306 ---------------~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~-----ealsak~~eie~Le---~rl~~Le~el~~~ 362 (705)
...+..++..++..+...+..+...+..+. ..+-...+.|..|. ..+.....++...
T Consensus 229 ~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~ 308 (1111)
T PF13514_consen 229 ELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRL 308 (1111)
T ss_pred hcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222444444455444444444443221 11222344444444 3445555666666
Q ss_pred HhHHHHHHHHHHHHHHHhh
Q 005259 363 EGNLASLQMNMESIMRNRE 381 (705)
Q Consensus 363 K~rleele~E~~rl~e~l~ 381 (705)
...+..+..++..+...+.
T Consensus 309 ~~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 309 EAELAELEAELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 6667777777666666665
No 143
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.25 E-value=22 Score=41.95 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK 580 (705)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~ 580 (705)
+.+...+.++.+.|.+-......+.....+|...-.+
T Consensus 375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~ 411 (560)
T PF06160_consen 375 SEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKE 411 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555444444444444443333
No 144
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=93.16 E-value=33 Score=43.78 Aligned_cols=34 Identities=6% Similarity=0.064 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 005259 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (705)
Q Consensus 447 ea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~q 480 (705)
+...+.++....+..+.+++|.+..++++..-++
T Consensus 280 ~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 280 RMDLIASQQRQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444445555555555555555544443
No 145
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.13 E-value=7.4 Score=42.65 Aligned_cols=121 Identities=19% Similarity=0.262 Sum_probs=65.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005259 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID 353 (705)
Q Consensus 274 La~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~ 353 (705)
|.-++..|.+....++.-...|...+..+.+..-.|..+...|..++..++.....+++ -..++...+..++.
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~-------~d~~eL~~lk~~l~ 214 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED-------CDPTELDRAKEKLK 214 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh-------CCHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555554433333322 12234445555566
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005259 354 ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (705)
Q Consensus 354 ~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l 402 (705)
....++...+..+++++.++..+...+.....+ ++.++.+|+.++.-.
T Consensus 215 ~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~-k~e~~~~I~~ae~~~ 262 (312)
T smart00787 215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNK-KSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 666666666666666666666666666665555 555555555555543
No 146
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=27 Score=42.66 Aligned_cols=36 Identities=11% Similarity=-0.127 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584 (705)
Q Consensus 549 rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~ 584 (705)
.+-.++++-.+++--+.....-..+|..-|+.+...
T Consensus 905 ki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~ 940 (970)
T KOG0946|consen 905 KIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQP 940 (970)
T ss_pred cccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCC
Confidence 444455555555544444444555555555555443
No 147
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.00 E-value=27 Score=42.46 Aligned_cols=44 Identities=32% Similarity=0.387 Sum_probs=32.8
Q ss_pred HhhhhHHHHhhhhhcccCCCC----CCCCCCCcchhhhhchHHHhhhh
Q 005259 15 VDRRAKLVVNELADEQSDFQT----PASNGQGSQAKKIKSRIKAQRRH 58 (705)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~k~~~~~~~~~~~~ 58 (705)
.||=|-|.-.=|--|.+.+-. +-+|+..=.+|+-.+||||-+++
T Consensus 12 LDrCAsLL~dILrnE~sGsE~~yse~r~nsrplegK~~~~KKKG~~Kh 59 (861)
T PF15254_consen 12 LDRCASLLRDILRNEDSGSETVYSENRSNSRPLEGKRNGSKKKGPEKH 59 (861)
T ss_pred hHHHHHHHHHhhhcccCCCcccccccccCCCcCCcccccccCCCCccc
Confidence 588888888878777774322 24677777788888999999888
No 148
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=93.00 E-value=35 Score=43.59 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005259 388 IQALREELASVERRAEE 404 (705)
Q Consensus 388 lqSLE~eLkslq~~le~ 404 (705)
++.++..+..+|+.+..
T Consensus 217 ~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 217 SQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555444
No 149
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.95 E-value=17 Score=39.93 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005259 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (705)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~ 373 (705)
+.++..+..++..++.++...+..+..++.+.
T Consensus 150 ~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 150 LAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444333
No 150
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=92.93 E-value=23 Score=41.37 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcccchhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 515 SSLEAEVQKMRVEMAAMKRDAEHYSREE---HMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (705)
Q Consensus 515 ~s~E~elqkLr~e~~~~k~q~~els~q~---~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~ 575 (705)
...+.+...+..++....+.+..+++.+ ..-||.||..|+|+|+..+.++..-..|+.+|.
T Consensus 451 ~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 451 ESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444 468999999999999999999999999999886
No 151
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.89 E-value=26 Score=41.86 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (705)
Q Consensus 344 eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (705)
++.++..++..+.+++..++..++.++...+.+.+.
T Consensus 217 el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~ 252 (650)
T TIGR03185 217 ELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKK 252 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333
No 152
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.59 E-value=8 Score=38.55 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (705)
Q Consensus 280 RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ 324 (705)
++...+.+++.+..+++..+..++.....+...+..++..+...+
T Consensus 78 ~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 78 RLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344455555555555555544444444444444444444443333
No 153
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.45 E-value=35 Score=42.36 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=6.8
Q ss_pred CchhhhhHHHHHHHH
Q 005259 246 PTKEQDQLDEAQGLL 260 (705)
Q Consensus 246 ~~~lqkQLee~n~~L 260 (705)
...++.++..+.+.+
T Consensus 324 l~~~~~~~~~~~~~~ 338 (908)
T COG0419 324 LKSLEERLEKLEEKL 338 (908)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 154
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.35 E-value=15 Score=37.86 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005259 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (705)
Q Consensus 346 e~Le~rl~~Le~el~~~K~rleele~E~~rl~ 377 (705)
..|-.++..++.++.+...++..+...+..+-
T Consensus 7 a~lnrri~~leeele~aqErl~~a~~KL~Eae 38 (205)
T KOG1003|consen 7 AALNRRIQLLEEELDRAQERLATALQKLEEAE 38 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444333333
No 155
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.35 E-value=16 Score=38.02 Aligned_cols=115 Identities=13% Similarity=0.197 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHH-HHHHHHHHHHHHHHHhhhHHHHhhh
Q 005259 436 RIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ-AIQMQAWQDEVERARQGQRDAENKL 514 (705)
Q Consensus 436 elQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q-~~qL~~Lk~EL~~~rq~qr~l~~kl 514 (705)
.+++.+..-..+..-++.-+.-+....+.|+..++++...+....++-.....- -.+|.....|+..++.
T Consensus 87 s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~--------- 157 (207)
T PF05010_consen 87 SLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRS--------- 157 (207)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 333333333333333333333333344444444444444444333221111111 1234444555544433
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 515 SSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (705)
Q Consensus 515 ~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~ 575 (705)
+.+.++..|+..+.. .+.++.+|.+.|.+|....+.|..=..-|.
T Consensus 158 -~~~~e~~aLqa~lkk---------------~e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 158 -KHQAELLALQASLKK---------------EEMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred -HhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245666666666632 245788999999999888887776544443
No 156
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.10 E-value=13 Score=40.72 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHH
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL----TETRMIQALREELASVER 400 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~----~ekeilqSLE~eLkslq~ 400 (705)
+...+.+++.++..+...+...+.+..++..+...+...+.. ..++ +..|...+..++.
T Consensus 223 ~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~E-i~~Lk~~~~~Le~ 285 (312)
T smart00787 223 KVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKE-IEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHH
Confidence 334444555555555555555555555555554444443333 2444 4444444444443
No 157
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=91.99 E-value=20 Score=38.40 Aligned_cols=96 Identities=20% Similarity=0.177 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT----ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVE 422 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~----ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~e 422 (705)
+|+..+.-++.....+..+-..+..|..+++++..+. .+. ...|+.+|..+. +-+.+...+..+
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q-~s~Leddlsqt~-----------aikeql~kyiRe 116 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQ-ESQLEDDLSQTH-----------AIKEQLRKYIRE 116 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 4444555555555555555555555556666666552 333 444554444433 224444456677
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 005259 423 LEHRAAEASMA-------LARIQRIADERTAKAGELEQK 454 (705)
Q Consensus 423 LEee~~eLseA-------LaelQrkLeEe~aea~eLeqQ 454 (705)
||.+|..|..+ +...+.+|++++.+...|+..
T Consensus 117 LEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESE 155 (333)
T KOG1853|consen 117 LEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESE 155 (333)
T ss_pred HHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666554 445566666666555555443
No 158
>PLN03188 kinesin-12 family protein; Provisional
Probab=91.81 E-value=48 Score=42.53 Aligned_cols=50 Identities=24% Similarity=0.163 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 541 EEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 590 (705)
Q Consensus 541 q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~ 590 (705)
+...+|=-|+++--+-+.--|.+.-.++.|..-+-.|++++..+++.|-.
T Consensus 1197 ~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~ 1246 (1320)
T PLN03188 1197 QAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEIS 1246 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33578888999999999999999999999999999999999999987743
No 159
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.73 E-value=22 Score=38.34 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ 383 (705)
+|-.|+.++..=+.--+.-++....+...|...-..+
T Consensus 131 D~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l 167 (265)
T COG3883 131 DLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAAL 167 (265)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666555555555555555555555444443
No 160
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.67 E-value=29 Score=39.65 Aligned_cols=86 Identities=23% Similarity=0.211 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhH
Q 005259 290 SENAQLEELLVAERELSR-SYEARIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETLVSSIDALKKQAALSEGN 365 (705)
Q Consensus 290 s~~aqLEell~el~e~~~-~L~~rl~~LQaeL~~EQ~~l~q~es---~~~ealsak~~eie~Le~rl~~Le~el~~~K~r 365 (705)
+.+-..|+++.+..+-++ .+..++.-|+.. +..+.. .-..+-+...-+.-.|+.|...|++.++....+
T Consensus 200 sn~~~tedl~~e~mee~r~di~~kv~flerk-------v~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElr 272 (502)
T KOG0982|consen 200 SNKLETEDLLVEGMEEERIDIERKVRFLERK-------VQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELR 272 (502)
T ss_pred ccccchhhhhhhhhhchhhhHHHHHHHHHHH-------HHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 335567777776655544 233344444444 333332 223344556777777888888888888888888
Q ss_pred HHHHHHHHHHHHHHhhh
Q 005259 366 LASLQMNMESIMRNREL 382 (705)
Q Consensus 366 leele~E~~rl~e~l~~ 382 (705)
.++.-.+-.+-..++-.
T Consensus 273 aeE~l~Ee~rrhrEil~ 289 (502)
T KOG0982|consen 273 AEESLSEEERRHREILI 289 (502)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77776665554444444
No 161
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.66 E-value=19 Score=37.46 Aligned_cols=73 Identities=23% Similarity=0.137 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005259 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQE 468 (705)
Q Consensus 393 ~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQe 468 (705)
.-+.....++..+...|.+.+..+. ..|+.+|.++......++..+.--.+.+.-.+-++..|+..+++-.++
T Consensus 118 k~~~ey~~~l~~~eqry~aLK~hAe---ekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kE 190 (207)
T PF05010_consen 118 KCIEEYEERLKKEEQRYQALKAHAE---EKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKE 190 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555566666666544 334566655555555444443333333333333334444443333333
No 162
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.53 E-value=40 Score=41.07 Aligned_cols=78 Identities=12% Similarity=0.256 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (705)
Q Consensus 496 Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~ 575 (705)
+++||.+.....+.+...|......+++.+..++.-+... ......-+.|.+.+++-|.+--..|..+..+...+.
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~----~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~ 712 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPK----KKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIK 712 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444344444444444444444444433111111 011133466777888888777777777777666554
Q ss_pred HH
Q 005259 576 FQ 577 (705)
Q Consensus 576 ~q 577 (705)
..
T Consensus 713 ~~ 714 (717)
T PF10168_consen 713 KI 714 (717)
T ss_pred Hh
Confidence 43
No 163
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.41 E-value=29 Score=39.20 Aligned_cols=75 Identities=17% Similarity=0.297 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 312 RIKQLEQELSVYKSEVTKVESNLAEALAA---KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 312 rl~~LQaeL~~EQ~~l~q~es~~~ealsa---k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
.+..+..+|...+.++...+....+..+- .+.+.+.--.+....++++...+..+.+++.++.++...-.++..+
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr 152 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR 152 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544433322221 2223333334555556666666666666666666655544444444
No 164
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.18 E-value=0.92 Score=45.89 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 590 (705)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~ 590 (705)
..|+.++..|.+.|.+|+..++.|..|..+|.+++-.++.+++.-..
T Consensus 126 ~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 126 AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999999999999999999999998877776543
No 165
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.09 E-value=46 Score=40.91 Aligned_cols=120 Identities=25% Similarity=0.273 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 005259 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE---RRAEEERAAHNATKMAAMEREV 421 (705)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq---~~le~E~~aH~aTk~ea~~Re~ 421 (705)
...|..++..++.+-..+...+.+++.+++.++-.+...+.. +.+|+.+|.+++ ..++.++..+.........|..
T Consensus 591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~-L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~ 669 (769)
T PF05911_consen 591 KKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQK-LEELQSELESAKESNSLAETQLKAMKESYESLETRLK 669 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334444444444444444444444444444444444444444 444444433332 2233334444444444555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005259 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATL 465 (705)
Q Consensus 422 eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqL 465 (705)
.++.+...+..-+..++..++.++.-..++..+|..|+.++...
T Consensus 670 ~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~ 713 (769)
T PF05911_consen 670 DLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERM 713 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh
Confidence 66666666666677777777777766666666666666555444
No 166
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.78 E-value=19 Score=35.89 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005259 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (705)
Q Consensus 419 Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~ 474 (705)
+...+......+.+-+..+++.+.+...++..++..+..+..++..+.+.+++.+.
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333433444444444555555566666666666665555555555544443
No 167
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.57 E-value=30 Score=37.96 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 307 RSYEARIKQLEQELSVYKSEVTKVES 332 (705)
Q Consensus 307 ~~L~~rl~~LQaeL~~EQ~~l~q~es 332 (705)
..|+.++..|+.+....+.+..++..
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~ 188 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKT 188 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 55666777777777777777766664
No 168
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=90.14 E-value=42 Score=39.16 Aligned_cols=90 Identities=12% Similarity=0.154 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHH
Q 005259 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMI 388 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeil 388 (705)
|+.++..++.+..+++...-....+-..--...+....++..+++-++-.+......++..-.++-+.+++.+.+..+ +
T Consensus 164 L~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq-l 242 (596)
T KOG4360|consen 164 LQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ-L 242 (596)
T ss_pred HHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 333444444444444444443332111111224444557777788888888888888888888888888888887777 5
Q ss_pred HHHHHHHHHHH
Q 005259 389 QALREELASVE 399 (705)
Q Consensus 389 qSLE~eLkslq 399 (705)
..+.++++-+.
T Consensus 243 ~d~qkk~k~~~ 253 (596)
T KOG4360|consen 243 VDLQKKIKYLR 253 (596)
T ss_pred HhhHHHHHHHH
Confidence 55555554443
No 169
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.96 E-value=18 Score=34.46 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=22.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005259 359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (705)
Q Consensus 359 l~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~ 404 (705)
+..++..+.+++..-+.+.+-+..+..+ ...|+.++..++.-+..
T Consensus 70 ~~~L~~el~~l~~ry~t~LellGEK~E~-veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 70 VEELEQELEELQQRYQTLLELLGEKSEE-VEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444445555 66666666666655543
No 170
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.85 E-value=12 Score=35.67 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005259 288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (705)
Q Consensus 288 lks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rle 367 (705)
+.+.++++|-.+..+++.+..|......+..++.+.-......+. ..........++.+|+.+..++=+-+.+-....+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~-~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve 99 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA-LKKEVEELEQELEELQQRYQTLLELLGEKSEEVE 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 344444444444444444444444444444444333332222222 2223333334444444444444333333344444
Q ss_pred HHHHHHHH
Q 005259 368 SLQMNMES 375 (705)
Q Consensus 368 ele~E~~r 375 (705)
+++.+..-
T Consensus 100 EL~~Dv~D 107 (120)
T PF12325_consen 100 ELRADVQD 107 (120)
T ss_pred HHHHHHHH
Confidence 44444333
No 171
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=89.82 E-value=28 Score=41.99 Aligned_cols=37 Identities=11% Similarity=-0.004 Sum_probs=23.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhhhH
Q 005259 655 RYPIARIILLFYLVFVHLFLMYL-LHRLQEQADNFAAR 691 (705)
Q Consensus 655 RyP~ARl~vlvYmvlLHLWVm~V-L~~~~~~~~~~~~~ 691 (705)
+-|++|+-.-+-+.-|-+||=+. ++.-.+.+++.+++
T Consensus 582 ~~p~~~w~~p~vvawlel~vgmpa~yva~c~~nVksg~ 619 (916)
T KOG0249|consen 582 GLPFAQWDGPTVVAWLELWVGMPAWYVAACRANVKSGA 619 (916)
T ss_pred cCchhhcCCCeeeehhhHHhccHHHHHHHHHHHhhhhH
Confidence 46777777777777888888655 44444444544433
No 172
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.69 E-value=13 Score=40.01 Aligned_cols=104 Identities=14% Similarity=0.250 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 364 GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE 443 (705)
Q Consensus 364 ~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeE 443 (705)
.+|.+++.++++|+.+..... +.|.+++.++......+..-+. ....|..++.-|.+....+++.-+-
T Consensus 18 qKIqelE~QldkLkKE~qQrQ--------fQleSlEAaLqKQKqK~e~ek~----e~s~LkREnq~l~e~c~~lek~rqK 85 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQ--------FQLESLEAALQKQKQKVEEEKN----EYSALKRENQSLMESCENLEKTRQK 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHhh----hhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 455556666666554444333 4455555555544443333232 4555666777777766666665444
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHc
Q 005259 444 RTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (705)
Q Consensus 444 e~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~ 479 (705)
-...+..-+.++.-||-.+..++..++.++.++.+.
T Consensus 86 lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~ 121 (307)
T PF10481_consen 86 LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRC 121 (307)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666666655555555555444433
No 173
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=89.62 E-value=55 Score=39.50 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=39.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (705)
Q Consensus 275 a~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es 332 (705)
.+...++..--.++.+.+...|..+..++..+..=.+.+..|.-.|...|.-+.+++.
T Consensus 218 KE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE 275 (786)
T PF05483_consen 218 KEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEE 275 (786)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445566677777777777777777766666777777777777777777774
No 174
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.59 E-value=15 Score=42.61 Aligned_cols=136 Identities=17% Similarity=0.175 Sum_probs=91.7
Q ss_pred HhhhhcCCCCchhhh---hHHHHHHHHHhhhhhcchHHHHHH-HHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHhHHH
Q 005259 237 QQALKADDPPTKEQD---QLDEAQGLLKTTISTGQSKEARLA-RVCAGLSSRLQEYKSEN---AQLEELLVAERELSRSY 309 (705)
Q Consensus 237 ~~~~~~~ek~~~lqk---QLee~n~~LrsE~eal~~ke~qLa-~~~~RLrk~~~elks~~---aqLEell~el~e~~~~L 309 (705)
.++.-.-+|...+.+ ||+---+.||+|.=+-..|+.++- ...-+|+.......+-. +++=..+..+++-...|
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL 238 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL 238 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544 556666778888766778888887 55556777666655543 33334445677777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259 310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (705)
Q Consensus 310 ~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl 376 (705)
.+.|+.++...... ....+++.+.|-+..+-...|..++..++.+..+....+.++++++..+
T Consensus 239 lsql~d~qkk~k~~----~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 239 LSQLVDLQKKIKYL----RHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888776653 3334456666666777777788888888888888888888888886654
No 175
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=89.44 E-value=46 Score=38.31 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 005259 517 LEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQL---------ETMASEKAAAEFQLEKEMNRLQE 587 (705)
Q Consensus 517 ~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~ql---------E~L~~Er~sL~~qLE~~~~~~~~ 587 (705)
++.++..++.++..+.+.+.+ .+..-..++.||..|..++......+ -...+|-..|..+.+-+...|..
T Consensus 291 Le~qLa~~~aeL~~L~~~~~p-~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~s 369 (434)
T PRK15178 291 FETQLAEAKAEYAQLMVNGLD-QNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWES 369 (434)
T ss_pred HHHHHHHHHHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444332221 12223455556666655555444333 23556667777777777777777
Q ss_pred HHHHHhhhhc
Q 005259 588 VQSEAERSRV 597 (705)
Q Consensus 588 e~~~~~~sr~ 597 (705)
..+.++.+|+
T Consensus 370 AlaaLE~AR~ 379 (434)
T PRK15178 370 ALQTLQQGKL 379 (434)
T ss_pred HHHHHHHHHH
Confidence 7766666654
No 176
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.17 E-value=6.9 Score=46.18 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005259 289 KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLAS 368 (705)
Q Consensus 289 ks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rlee 368 (705)
.+++..++..+..+.+-.+.|+..+.+++.+.....+.+.++..++. .-..++-++..+..++..|+.++.+.+.+.+.
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444443344444444444444444444444444444443222 12236667778888888888888888888888
Q ss_pred HHHHHHHHH
Q 005259 369 LQMNMESIM 377 (705)
Q Consensus 369 le~E~~rl~ 377 (705)
|+..+.++.
T Consensus 500 L~~~l~~l~ 508 (652)
T COG2433 500 LERKLAELR 508 (652)
T ss_pred HHHHHHHHH
Confidence 877776655
No 177
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.96 E-value=14 Score=35.67 Aligned_cols=55 Identities=25% Similarity=0.372 Sum_probs=34.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (705)
Q Consensus 278 ~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es 332 (705)
..+|......++.+++.+|..+.......+.+...+..++..+..+++++..++.
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555556666666777777777777776666665
No 178
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.70 E-value=20 Score=39.29 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 560 KQTQLETMASEKAAAEFQLEKEMNRLQE 587 (705)
Q Consensus 560 KQ~qlE~L~~Er~sL~~qLE~~~~~~~~ 587 (705)
.+-++-.+..++.++..|++.+...++.
T Consensus 104 ~~~~l~~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 104 LQLELIEFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555544443
No 179
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.68 E-value=43 Score=37.03 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005259 441 ADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (705)
Q Consensus 441 LeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r 478 (705)
++.=..+-.-|.+++..++.+..-+++.+..|..-+++
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444556778888889999999999999999988884
No 180
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.43 E-value=7.4 Score=40.26 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=20.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005259 357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400 (705)
Q Consensus 357 ~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~ 400 (705)
+++...+..+.++..++++|.+.+..+.++ ...++.++..++.
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~-~~~l~~~~~~~~~ 167 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKK-VDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333334444444555555555555554444 4444444444443
No 181
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.34 E-value=15 Score=35.62 Aligned_cols=80 Identities=29% Similarity=0.343 Sum_probs=54.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005259 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (705)
Q Consensus 273 qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl 352 (705)
+|.-...||++.+..+...+..++...+.+....+.+...+.....++.+.+..+.+....+.-.+-+++-++.-|..++
T Consensus 70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556667777777777777777777777777777777777777777777777777777666655555555555555443
No 182
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.02 E-value=57 Score=37.63 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=51.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 511 ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (705)
Q Consensus 511 ~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~ 586 (705)
...+.+.+....+|+++.+..-. +..-..|..||++++-.+---.+.|-.+..|...|+.|+.....++.
T Consensus 358 ~eei~~~eel~~~Lrsele~lp~------dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 358 DEEIESNEELAEKLRSELEKLPD------DVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALN 427 (521)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCc------hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455567777788888865332 23357899999999887655558899999999999998888665443
No 183
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.01 E-value=42 Score=36.09 Aligned_cols=54 Identities=13% Similarity=0.264 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHH
Q 005259 351 SIDALKKQAALSEGNLASLQMNMESIMRNREL----TETRMIQALREELASVERRAEEE 405 (705)
Q Consensus 351 rl~~Le~el~~~K~rleele~E~~rl~e~l~~----~ekeilqSLE~eLkslq~~le~E 405 (705)
.+..|++++..++.++.+++.+..-|..=..+ +.=+ +.+|...|..++..-..|
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vq-Ia~L~rqlq~lk~~qqdE 139 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQ-IANLVRQLQQLKDSQQDE 139 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555554443332222 1222 444444444444444443
No 184
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.87 E-value=1e+02 Score=40.37 Aligned_cols=13 Identities=31% Similarity=0.233 Sum_probs=6.7
Q ss_pred HhHhhhhhhhhhH
Q 005259 639 AKLLDSGAVRATR 651 (705)
Q Consensus 639 a~~lDs~slr~g~ 651 (705)
+.+||++=+--|.
T Consensus 629 ~GLLDA~v~p~~~ 641 (1353)
T TIGR02680 629 AGLLDAWVTADGT 641 (1353)
T ss_pred CCCcceeeCCCcc
Confidence 4666766443333
No 185
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.73 E-value=15 Score=43.55 Aligned_cols=94 Identities=21% Similarity=0.314 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAE 429 (705)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~e 429 (705)
.++.....++..+...+++++.++..|+..+..+.++ +..|+.+|..+......+...- | +...
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~e-ie~L~~~l~~~~r~~~~~~~~~---------r------ei~~ 478 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELEELKRE-IEKLESELERFRREVRDKVRKD---------R------EIRA 478 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhh---------H------HHHH
Confidence 3444555555555666666666666666666665555 6667777777776665432211 1 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005259 430 ASMALARIQRIADERTAKAGELEQKVAMLE 459 (705)
Q Consensus 430 LseALaelQrkLeEe~aea~eLeqQls~LE 459 (705)
+..-+..++++|.++..++++|+.++..+.
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234456677888888888888887766654
No 186
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=87.56 E-value=45 Score=35.89 Aligned_cols=106 Identities=14% Similarity=0.132 Sum_probs=53.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005259 277 VCAGLSSRLQEYKSENAQLEELLVA-------ERELSRSYEARIKQ-LEQELSVYKSEVTKVESNLAEALAAKNSEIETL 348 (705)
Q Consensus 277 ~~~RLrk~~~elks~~aqLEell~e-------l~e~~~~L~~rl~~-LQaeL~~EQ~~l~q~es~~~ealsak~~eie~L 348 (705)
-+.-|.+...++.+.+...|+.-+. +.+++....+-+.. =...|...+.++...+..+...++....+...|
T Consensus 14 h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l 93 (258)
T PF15397_consen 14 HEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQL 93 (258)
T ss_pred HHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455666666666666666664431 22222222221100 012233344444555555555555555556666
Q ss_pred HHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHhhh
Q 005259 349 VSSIDALKKQAALSE-----------GNLASLQMNMESIMRNREL 382 (705)
Q Consensus 349 e~rl~~Le~el~~~K-----------~rleele~E~~rl~e~l~~ 382 (705)
..++...+.++.-+. -++..+..+++++.++..+
T Consensus 94 ~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqd 138 (258)
T PF15397_consen 94 DAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQD 138 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655555443 2566666666666665555
No 187
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.56 E-value=23 Score=39.32 Aligned_cols=109 Identities=22% Similarity=0.227 Sum_probs=44.5
Q ss_pred HHhhhhhcchHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 260 LKTTISTGQSKEARLARVCAGLSSRLQEY---KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAE 336 (705)
Q Consensus 260 LrsE~eal~~ke~qLa~~~~RLrk~~~el---ks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~e 336 (705)
|++.+--+-.++--|...|.-+++++.++ +..+.+|=..|-..++..-...++...||.-+...+++-.+.+-
T Consensus 73 lq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lql---- 148 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQL---- 148 (401)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----
Confidence 33333333334445555555555554432 33333333322233333222333444444444333332222221
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005259 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN 372 (705)
Q Consensus 337 alsak~~eie~Le~rl~~Le~el~~~K~rleele~E 372 (705)
+|.+..-+..+.+.+-+.|++|+.+.-.....+-++
T Consensus 149 qL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~e 184 (401)
T PF06785_consen 149 QLDALQQECGEKEEESQTLNRELAEALAYQQELNDE 184 (401)
T ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333344555555555555555554444444
No 188
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=87.47 E-value=37 Score=35.23 Aligned_cols=81 Identities=21% Similarity=0.255 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhHHHHHH--------HHHHHHHHHhh
Q 005259 311 ARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQ--------MNMESIMRNRE 381 (705)
Q Consensus 311 ~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl-~~Le~el~~~K~rleele--------~E~~rl~e~l~ 381 (705)
.++..||.+|...|.++.+.+. |+-++ ..|++++..++.+-.... .....|++.+-
T Consensus 3 ekv~~LQ~AL~~LQaa~ekRE~---------------lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~Lr 67 (205)
T PF12240_consen 3 EKVERLQQALAQLQAACEKREQ---------------LERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLR 67 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHH
Confidence 4677888888888877776664 22222 345555555543322111 34667888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 382 LTETRMIQALREELASVERRAEEERA 407 (705)
Q Consensus 382 ~~ekeilqSLE~eLkslq~~le~E~~ 407 (705)
.++.+ +=+||.++--.++++-.|..
T Consensus 68 EkEEr-ILaLEad~~kWEqkYLEEs~ 92 (205)
T PF12240_consen 68 EKEER-ILALEADMTKWEQKYLEESA 92 (205)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 88888 77899999999999855533
No 189
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.28 E-value=31 Score=33.81 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
.|+.++.+|++++.......+.+..++...+..+..+..+
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~e 60 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEE 60 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444443333
No 190
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.26 E-value=56 Score=36.70 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=30.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHH
Q 005259 276 RVCAGLSSRLQEYKSENAQLEELLVAERELSRS---------YEARIKQLEQELSVYKSEV 327 (705)
Q Consensus 276 ~~~~RLrk~~~elks~~aqLEell~el~e~~~~---------L~~rl~~LQaeL~~EQ~~l 327 (705)
....-|.+++.+++.+....|..+..-+..... ...++..|..++...+..+
T Consensus 171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 231 (444)
T TIGR03017 171 KAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQV 231 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777766665554322 2234555555555444433
No 191
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=86.91 E-value=9.3 Score=35.56 Aligned_cols=67 Identities=24% Similarity=0.368 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005259 519 AEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAE 593 (705)
Q Consensus 519 ~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~~~~ 593 (705)
.+..+||++...++.-. .+...+...|++.|-.|...|-.+..|..+|.|+-+.+..|...-+-+++
T Consensus 5 ~eYsKLraQ~~vLKKaV--------ieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAV--------IEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665555322 56667789999999999999999999999999999999998888776665
No 192
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.81 E-value=46 Score=35.26 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHH
Q 005259 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMI 388 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeil 388 (705)
|+.++.+++.+....+.++...+.. +..|+..+..++.+...+..+..+++.++.+|.......+.+ .
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~-----------a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eE-k 77 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEET-----------AEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEE-K 77 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3344444444544444444443332 236666777777777777777777777777766666665444 3
Q ss_pred HHHHHHHHHH
Q 005259 389 QALREELASV 398 (705)
Q Consensus 389 qSLE~eLksl 398 (705)
..|+.++..+
T Consensus 78 ~~Le~e~~e~ 87 (246)
T PF00769_consen 78 EQLEQELREA 87 (246)
T ss_dssp ---HHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 193
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.36 E-value=62 Score=36.33 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=9.9
Q ss_pred hhhhhhhhcccccccc
Q 005259 91 TLAVEKETITTGKTQK 106 (705)
Q Consensus 91 ~~~~~~~~~~~~~~~~ 106 (705)
.+.++.+.|.|..++.
T Consensus 68 ~i~tq~~il~S~~v~~ 83 (444)
T TIGR03017 68 YMATQVDIINSDRVAK 83 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666677776664
No 194
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.10 E-value=47 Score=35.20 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005259 441 ADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (705)
Q Consensus 441 LeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~ 476 (705)
+.+....+..|.......+.+...|+.++.......
T Consensus 84 ~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~ 119 (246)
T PF00769_consen 84 LREAEAEIARLEEESERKEEEAEELQEELEEAREDE 119 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444455555544444333
No 195
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=86.10 E-value=44 Score=34.31 Aligned_cols=113 Identities=16% Similarity=0.252 Sum_probs=68.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 335 AEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKM 414 (705)
Q Consensus 335 ~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ 414 (705)
...|..|.-.++.|+.++..++.-+......|...+........-...-... +..|..-|+.++..+..-...
T Consensus 59 eAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q-~~~L~~~l~~a~~nl~~a~~~------ 131 (188)
T PF05335_consen 59 EAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQ-LETLKAALKAAQANLANAEQV------ 131 (188)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------
Confidence 3467777778888888888888888888888888887777777666665555 555555566555554331111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005259 415 AAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ 466 (705)
Q Consensus 415 ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLk 466 (705)
.......|.+-...|+..+.+++.|.+++.....||+..+
T Consensus 132 ------------a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 132 ------------AEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222333444555566666666666555555554443
No 196
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.09 E-value=93 Score=38.08 Aligned_cols=136 Identities=18% Similarity=0.240 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHH---HHH----------HHHH
Q 005259 433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQ---MQA----------WQDE 499 (705)
Q Consensus 433 ALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~q---L~~----------Lk~E 499 (705)
.+...+..++.+..++..|+.++..--.++-.++..+...+....++..--.+.....+| +.. ..-+
T Consensus 692 ~~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~si~~~~~t~~~q~~~~a~f~q~a~~~h~~~vd 771 (1104)
T COG4913 692 DIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHSIAKQGMTGALQALGAAHFPQVAPEQHDDIVD 771 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhChHhhhhhhh
Confidence 344445555555555555555555555555555555544444444443211111111011 000 0011
Q ss_pred HHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhh--------cccchhh--hHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 005259 500 VERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA--------EHYSREE--HMELEKRYRELTD-LLYYKQTQLETMA 568 (705)
Q Consensus 500 L~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~--------~els~q~--~~elE~rl~eLtE-~L~eKQ~qlE~L~ 568 (705)
..+ .+..+.|..+|..-+..+.+|+.++-..-.++ .++.+.+ --+|=.++++|++ .|-++.+.-..|.
T Consensus 772 ~~~-~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~Lpef~arF~~ll 850 (1104)
T COG4913 772 IER-IEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDALPEFLARFQELL 850 (1104)
T ss_pred HHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 111 02233455667777777777777762211111 1111111 4577888888875 5677776666655
Q ss_pred H
Q 005259 569 S 569 (705)
Q Consensus 569 ~ 569 (705)
.
T Consensus 851 N 851 (1104)
T COG4913 851 N 851 (1104)
T ss_pred h
Confidence 4
No 197
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=86.06 E-value=91 Score=37.98 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
..++.|+ +...|.+++...|.+++.+.-+.+++....+.+-.+
T Consensus 210 ermaAle-~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e 252 (916)
T KOG0249|consen 210 ERMAALE-DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGE 252 (916)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3344444 566777778888888888888877777766665444
No 198
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=86.02 E-value=32 Score=38.57 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (705)
Q Consensus 286 ~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~ 322 (705)
+.++....+.-.+..............+..|+.++..
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~ 252 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISK 252 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4555555444443333333333333334444444333
No 199
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.99 E-value=61 Score=35.01 Aligned_cols=40 Identities=23% Similarity=0.092 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584 (705)
Q Consensus 545 elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~ 584 (705)
.|.++..++..-+..-......+..|+.+|..|.......
T Consensus 187 ~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~~qka~a~a~ 226 (265)
T COG3883 187 SLNSQKAEKNALIAALAAKEASALGEKAALEEQKALAEAA 226 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444466666777888887666555543
No 200
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.67 E-value=36 Score=32.04 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005259 388 IQALREELASVERRAEE 404 (705)
Q Consensus 388 lqSLE~eLkslq~~le~ 404 (705)
+..|+..+..+...++.
T Consensus 60 ~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 60 IAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444444
No 201
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=84.41 E-value=58 Score=34.27 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=27.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 334 ~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
+...+.+.++=...|.-.|..++.++...+..+..+-....++..++.....+
T Consensus 15 ~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~ 67 (225)
T COG1842 15 INELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQAR 67 (225)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444555555555666666666666666555555555554333
No 202
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=84.37 E-value=69 Score=35.11 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (705)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e 588 (705)
..+-..+.++.+.++..|..+..+.....+|....-....+...+
T Consensus 217 ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~~e 261 (294)
T COG1340 217 VELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKRE 261 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888888888888888887777777666655444433
No 203
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=84.05 E-value=72 Score=35.09 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 558 YYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 590 (705)
Q Consensus 558 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~ 590 (705)
-.+..+++.|..|....+..++.+..++++...
T Consensus 274 ~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~ 306 (362)
T TIGR01010 274 NEQTADYQRLVLQNELAQQQLKAALTSLQQTRV 306 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777666554
No 204
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.00 E-value=48 Score=40.47 Aligned_cols=12 Identities=25% Similarity=0.102 Sum_probs=8.2
Q ss_pred CCCCCcccCCCC
Q 005259 150 ATPNGEILNEND 161 (705)
Q Consensus 150 ~~~~~~~~~~~~ 161 (705)
.|++|+++.-..
T Consensus 459 lts~~e~v~l~L 470 (717)
T PF10168_consen 459 LTSSGECVVLPL 470 (717)
T ss_pred EccCCcEEEEEc
Confidence 677777766554
No 205
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=83.93 E-value=67 Score=34.59 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQMN----MESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVE 422 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E----~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~e 422 (705)
+|+.+.+.|.-++...|.+.+.-..+ ...|-+.++++ ..|+..+.+-+..|+++-.-=..+-++|-.-+.+=+..
T Consensus 63 dl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt-~aikeql~kyiReLEQaNDdLErakRati~sleDfeqr 141 (333)
T KOG1853|consen 63 DLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQT-HAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQR 141 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHH
Confidence 44555555555555555444433332 22333333332 23466666666666665443233334443322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (705)
Q Consensus 423 LEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE 473 (705)
|-.++ +-.+-++..|+|.- .|-.-+..|..+...|+|+|+--.
T Consensus 142 LnqAI----ErnAfLESELdEke----~llesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 142 LNQAI----ERNAFLESELDEKE----VLLESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHH----HHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 22333444444433 333334456667777777775433
No 206
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.87 E-value=1.1e+02 Score=37.09 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005259 434 LARIQRIADERTAKAGELEQKVAMLEVECATL 465 (705)
Q Consensus 434 LaelQrkLeEe~aea~eLeqQls~LE~elkqL 465 (705)
+..+-.+...++.+..++...++.+-.+++.+
T Consensus 239 le~i~~~~~dqlqel~~l~~a~~q~~ee~~~~ 270 (716)
T KOG4593|consen 239 LEAINKNMKDQLQELEELERALSQLREELATL 270 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666555555555433
No 207
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.26 E-value=63 Score=33.84 Aligned_cols=27 Identities=26% Similarity=0.138 Sum_probs=15.9
Q ss_pred HHHHHHHhHhhhhhhhhhHhhhcchhHH
Q 005259 633 VQLQKAAKLLDSGAVRATRFLWRYPIAR 660 (705)
Q Consensus 633 ~~vk~Aa~~lDs~slr~g~fLRRyP~AR 660 (705)
--++-++.++.-++.-+++=|+ ||+.-
T Consensus 199 aALgyvahlv~lls~yL~v~Lp-y~i~~ 225 (302)
T PF10186_consen 199 AALGYVAHLVSLLSRYLGVPLP-YPITP 225 (302)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC-CCccc
Confidence 3455666666666666666555 66443
No 208
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.08 E-value=21 Score=31.10 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=43.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (705)
Q Consensus 510 l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~ 587 (705)
|+.++...=+.+..|+.++ .+|+.+...|.++-.......+.|..|+++|.-+|.-+..++++
T Consensus 9 LE~ki~~aveti~~Lq~e~---------------eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMEN---------------EELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444444445555555555 34555556666777777778888889999999999999988775
No 209
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=82.04 E-value=1e+02 Score=35.26 Aligned_cols=38 Identities=5% Similarity=0.114 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 547 EKRYRELTDLLY-YKQTQLETMASEKAAAEFQLEKEMNR 584 (705)
Q Consensus 547 E~rl~eLtE~L~-eKQ~qlE~L~~Er~sL~~qLE~~~~~ 584 (705)
+.|+..|...-. .-..++..+..+...+..+|+.+..+
T Consensus 275 ~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 275 NSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443322 34455555555555555555554443
No 210
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=81.05 E-value=1.5e+02 Score=36.65 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (705)
Q Consensus 547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (705)
+.-.+.|++-|..|...|+....=.+--.-+|-.++.++
T Consensus 271 eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 271 EEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666554443333333333333333
No 211
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.04 E-value=76 Score=36.31 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 413 KMAAMEREVELEHRAAEASMALARIQRIAD 442 (705)
Q Consensus 413 k~ea~~Re~eLEee~~eLseALaelQrkLe 442 (705)
+.....++.++.+..++..++.-+++++..
T Consensus 92 ~~r~~~eir~~~~q~~e~~n~~~~l~~~~~ 121 (459)
T KOG0288|consen 92 RIRSLNEIRELREQKAEFENAELALREMRR 121 (459)
T ss_pred HHHHHHHHHHHHHhhhhhccchhhHHHHHH
Confidence 334444555555555555655555554443
No 212
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=80.08 E-value=1.2e+02 Score=35.12 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (705)
Q Consensus 423 LEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeL 469 (705)
++.....|.++++..|+.|+|-+.+-..|.-++.-+.+.|-.|+.+.
T Consensus 388 ~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry 434 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERY 434 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444556778888888888888777777766666666666655444
No 213
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=79.78 E-value=81 Score=32.81 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (705)
Q Consensus 433 ALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~l 472 (705)
-+..|+..+....+++.-|+.++..++.++..++..+...
T Consensus 67 ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 67 ELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred hHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 3456777788888889999999999999999999999876
No 214
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=79.58 E-value=1.1e+02 Score=34.87 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 005259 396 ASVERRAEEERA 407 (705)
Q Consensus 396 kslq~~le~E~~ 407 (705)
..+|+....|..
T Consensus 320 ~~~Qq~~q~e~~ 331 (395)
T PF10267_consen 320 QQQQQVVQLEGT 331 (395)
T ss_pred HHhhhhhhhccc
Confidence 344444444433
No 215
>PLN02939 transferase, transferring glycosyl groups
Probab=79.41 E-value=1.9e+02 Score=36.76 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 419 REVELEHRAAEASMALARIQRIADERT 445 (705)
Q Consensus 419 Re~eLEee~~eLseALaelQrkLeEe~ 445 (705)
+...|+.+..-|..++.+++.++-...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (977)
T PLN02939 258 RVFKLEKERSLLDASLRELESKFIVAQ 284 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777888888888888888888876555
No 216
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=79.07 E-value=30 Score=33.37 Aligned_cols=61 Identities=18% Similarity=0.354 Sum_probs=41.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 272 ARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (705)
Q Consensus 272 ~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es 332 (705)
.||..+...|...-..+..|+..|...+.++.+......+.+..+...+.+.+..+...+.
T Consensus 50 kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 50 KQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444555666666667777777777777777777777777777777777776666666555
No 217
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.83 E-value=1.5e+02 Score=35.23 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 545 ELEKRYRELTDLLYYKQTQLETMASEK 571 (705)
Q Consensus 545 elE~rl~eLtE~L~eKQ~qlE~L~~Er 571 (705)
..+.|+.....-|.+|.+.++.|-.++
T Consensus 532 ~tkarl~stqqslaEke~HL~nLr~er 558 (654)
T KOG4809|consen 532 ATKARLASTQQSLAEKEAHLANLRIER 558 (654)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666667777777777776665
No 218
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.75 E-value=45 Score=36.58 Aligned_cols=61 Identities=8% Similarity=0.084 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005259 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (705)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~ 404 (705)
.+...|..++..++.+...++....+.-.+...++-.+....++ .+++...+..+...++.
T Consensus 71 ~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e-~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 71 KEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEE-RDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 33334555555555555555555555555555555555555444 45555445555544443
No 219
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=78.61 E-value=2e+02 Score=36.66 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005259 546 LEKRYRELTDLLYYKQTQLETMA 568 (705)
Q Consensus 546 lE~rl~eLtE~L~eKQ~qlE~L~ 568 (705)
++..+..+...+...+..+..+.
T Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~ 849 (1047)
T PRK10246 827 IQQELAQLAQQLRENTTRQGEIR 849 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333333
No 220
>PRK11281 hypothetical protein; Provisional
Probab=78.49 E-value=2.1e+02 Score=36.87 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 307 RSYEARIKQLEQELSVYKSEVTKVE 331 (705)
Q Consensus 307 ~~L~~rl~~LQaeL~~EQ~~l~q~e 331 (705)
..|+.++.+++.+|...|..+....
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~N 148 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYN 148 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555554444443
No 221
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.31 E-value=68 Score=33.91 Aligned_cols=7 Identities=0% Similarity=-0.054 Sum_probs=2.5
Q ss_pred HHhhhhH
Q 005259 277 VCAGLSS 283 (705)
Q Consensus 277 ~~~RLrk 283 (705)
.+.+|.+
T Consensus 16 ~k~~i~~ 22 (230)
T PF10146_consen 16 LKNEILQ 22 (230)
T ss_pred HHHHHHH
Confidence 3333333
No 222
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=77.94 E-value=86 Score=32.05 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005259 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (705)
Q Consensus 435 aelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~ 477 (705)
..++..++.....+..|+..+..++..+..++.+...+.....
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555554444443
No 223
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.86 E-value=2.1e+02 Score=36.38 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 555 DLLYYKQTQLETMASEKAAAEFQLEK 580 (705)
Q Consensus 555 E~L~eKQ~qlE~L~~Er~sL~~qLE~ 580 (705)
.++..-+.++..+..+...+..+++.
T Consensus 549 ~ql~~l~~q~~~lq~ql~ql~~ql~~ 574 (1042)
T TIGR00618 549 HQLTSERKQRASLKEQMQEIQQSFSI 574 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444433
No 224
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=77.76 E-value=1.8e+02 Score=35.78 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=14.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 358 QAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 358 el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
+..+.|..++++-.+++.++=++...+++
T Consensus 495 e~~rik~ev~eal~~~k~~q~kLe~sekE 523 (861)
T PF15254_consen 495 ETTRIKIEVEEALVNVKSLQFKLEASEKE 523 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Confidence 34444555555555555555555544443
No 225
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=77.65 E-value=1.5e+02 Score=34.82 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHHH
Q 005259 515 SSLEAEVQKMRVEMA 529 (705)
Q Consensus 515 ~s~E~elqkLr~e~~ 529 (705)
..+-.....++.++.
T Consensus 325 e~l~~~~~~l~~eL~ 339 (563)
T TIGR00634 325 EEVLEYAEKIKEELD 339 (563)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 226
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=77.38 E-value=1.3e+02 Score=33.86 Aligned_cols=107 Identities=20% Similarity=0.231 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 005259 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR-------EELASVERRAEEERAAHNATKMAAMER--EVEL 423 (705)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE-------~eLkslq~~le~E~~aH~aTk~ea~~R--e~eL 423 (705)
.++.+.+.+.+....+++.++..+++++...++. +..|+ .=|+-++.+++.-.. + =..+.... ...|
T Consensus 247 ~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~-i~~L~~ai~~k~~~lkvaqTRL~~R~~--R-P~vElcrD~~q~~L 322 (384)
T PF03148_consen 247 AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKN-IEDLEKAIRDKEGPLKVAQTRLENRTQ--R-PNVELCRDPPQYGL 322 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHhhHhc--C-CchHHHHhhHHHHH
Confidence 4455555555666666666666666665555554 44444 235555555443100 0 01111111 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005259 424 EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECA 463 (705)
Q Consensus 424 Eee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elk 463 (705)
-.+...+.+.+..++.+|.+.......|......|+.++.
T Consensus 323 ~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~ 362 (384)
T PF03148_consen 323 IEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIA 362 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777777766666666653
No 227
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=77.34 E-value=1.2e+02 Score=33.56 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=19.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 005259 449 GELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (705)
Q Consensus 449 ~eLeqQls~LE~elkqLkQeLq~lE~e~~r~q 480 (705)
..+..++..|+.|+..+-.+.+++..+..-.+
T Consensus 136 Ek~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk 167 (319)
T PF09789_consen 136 EKLREQIEQLERDLQSLLDEKEELVTERDAYK 167 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777776666655554444333
No 228
>PF15294 Leu_zip: Leucine zipper
Probab=77.22 E-value=1.1e+02 Score=33.37 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=10.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Q 005259 275 ARVCAGLSSRLQEYKSENAQLEE 297 (705)
Q Consensus 275 a~~~~RLrk~~~elks~~aqLEe 297 (705)
...-.||+.....++.+...+|.
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~ 153 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEK 153 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 229
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=77.19 E-value=1e+02 Score=32.48 Aligned_cols=95 Identities=24% Similarity=0.293 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHH
Q 005259 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE-TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTE 384 (705)
Q Consensus 306 ~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie-~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~e 384 (705)
.-.+..+-..++..+...+......++.-..+|.+.+.... ..-.+...++..+...+..+..+.....++..++..++
T Consensus 47 ~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le 126 (225)
T COG1842 47 LAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALE 126 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666666666666666666656666665553322 22245556666666666666666666666555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005259 385 TRMIQALREELASVERR 401 (705)
Q Consensus 385 keilqSLE~eLkslq~~ 401 (705)
.. +..++.....+..+
T Consensus 127 ~K-i~e~~~~~~~l~ar 142 (225)
T COG1842 127 QK-IAELRAKKEALKAR 142 (225)
T ss_pred HH-HHHHHHHHHHHHHH
Confidence 55 44444444444433
No 230
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=76.91 E-value=1.5e+02 Score=34.17 Aligned_cols=41 Identities=22% Similarity=0.110 Sum_probs=19.8
Q ss_pred HHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005259 257 QGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEE 297 (705)
Q Consensus 257 n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEe 297 (705)
|.-|+.+.|++.-|-.-+++...=|+.+.-+...+..|=|+
T Consensus 59 Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeE 99 (552)
T KOG2129|consen 59 NKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEE 99 (552)
T ss_pred hhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHH
Confidence 34455555555555444444444444444444444444333
No 231
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=76.89 E-value=1.6e+02 Score=34.49 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHc
Q 005259 429 EASMALARIQRIADERTA----KAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (705)
Q Consensus 429 eLseALaelQrkLeEe~a----ea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~ 479 (705)
.+-..+-++.+.+++... +.-.|++.+.-++.+...+.++|.+++.++...
T Consensus 459 ~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a 513 (622)
T COG5185 459 SIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEA 513 (622)
T ss_pred hHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555542 223467777777788888888888877666544
No 232
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=76.64 E-value=27 Score=29.62 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=37.5
Q ss_pred HHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259 256 AQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (705)
Q Consensus 256 ~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ 324 (705)
++.-|.+|+-+ +.-+.+.+...++.+-.+|..|.+-..+.+.|..+|..|..++...|
T Consensus 2 lQsaL~~Eira-----------kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 2 LQSALEAEIRA-----------KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666664 66677777777777777777666666666666666666666655443
No 233
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=76.21 E-value=1.6e+02 Score=34.28 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=11.4
Q ss_pred CCccccCCCCCCCCCccccccc
Q 005259 161 DSDVHLNHPPSPLPPKEMGIVN 182 (705)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~ 182 (705)
++..+..+|+++|--+.+-.-+
T Consensus 195 esaLn~~QpqSFl~~en~~~~v 216 (527)
T PF15066_consen 195 ESALNPSQPQSFLYKENVCRDV 216 (527)
T ss_pred hhccCCCCCcchhhhccccccc
Confidence 3445556666666555443333
No 234
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.78 E-value=1.6e+02 Score=34.19 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=33.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005259 358 QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (705)
Q Consensus 358 el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le 403 (705)
++...|..++.+-.+.+.+....++++++ ..+++..+..++..+.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~-kk~~e~k~~q~q~k~~ 392 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAE-KKIVERKLQQLQTKLK 392 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHH
Confidence 77788888888888888888888887777 6666666666665544
No 235
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.52 E-value=2e+02 Score=35.04 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=10.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhh
Q 005259 360 ALSEGNLASLQMNMESIMRNREL 382 (705)
Q Consensus 360 ~~~K~rleele~E~~rl~e~l~~ 382 (705)
...+.+...++.++.+.......
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~ 137 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQA 137 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333
No 236
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=75.02 E-value=1.8e+02 Score=34.29 Aligned_cols=81 Identities=21% Similarity=0.181 Sum_probs=44.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Q 005259 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALA-AKNSEIETLVSSI 352 (705)
Q Consensus 274 La~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~eals-ak~~eie~Le~rl 352 (705)
.+++.+++-+--.++..+.-.-|. -.|..|+.++..|+.-+.....++-..+..+.+.+. .|.....-.+.++
T Consensus 169 ~arm~aqi~~l~eEmS~r~l~rea------kl~~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee~l 242 (531)
T PF15450_consen 169 VARMQAQITKLGEEMSLRFLKREA------KLCSFLQKSFLALEKRMKAQESSRLRTERSLREELESRWQKLQELTEERL 242 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333 346777777777777777766666666654543333 3455555555666
Q ss_pred HHHHHHHH
Q 005259 353 DALKKQAA 360 (705)
Q Consensus 353 ~~Le~el~ 360 (705)
.++....+
T Consensus 243 ~al~gq~e 250 (531)
T PF15450_consen 243 RALQGQQE 250 (531)
T ss_pred HHHHhhHh
Confidence 66655544
No 237
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=74.64 E-value=1.1e+02 Score=31.41 Aligned_cols=101 Identities=24% Similarity=0.235 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHh
Q 005259 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE-TLVSSIDALKKQAALSEG 364 (705)
Q Consensus 286 ~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie-~Le~rl~~Le~el~~~K~ 364 (705)
.-+.--++.+++.+...+.-..........++..+..........+.....++.+.++.+. ..-.+...++..+..++.
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~ 105 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQ 105 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444443333333333344455555555555555555555555556555554443 233455555555555555
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q 005259 365 NLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 365 rleele~E~~rl~e~l~~~eke 386 (705)
.++.+......|...+..++..
T Consensus 106 ~~~~~~~~~~~l~~~l~~l~~k 127 (221)
T PF04012_consen 106 QLDQAEAQVEKLKEQLEELEAK 127 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444
No 238
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=74.39 E-value=4.9 Score=44.24 Aligned_cols=52 Identities=12% Similarity=0.228 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE 399 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq 399 (705)
+|...+......+..+...+..+..+...++..++...-. +..|+..+++++
T Consensus 102 ~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~-ItdLe~RV~~LE 153 (326)
T PF04582_consen 102 SLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALN-ITDLESRVKALE 153 (326)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcch-HhhHHHHHHHHh
Confidence 3333333333334444444444444444444444443333 444444444443
No 239
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=74.36 E-value=1.3e+02 Score=33.76 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005259 355 LKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392 (705)
Q Consensus 355 Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE 392 (705)
....+...+..|.++..+....++++...|+-+-+.++
T Consensus 232 I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle 269 (359)
T PF10498_consen 232 IESALPETKSQLDKLQQDISKTLEKIESREKYINNQLE 269 (359)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33346677778888888888888888887777444444
No 240
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=72.99 E-value=1.5e+02 Score=32.58 Aligned_cols=50 Identities=26% Similarity=0.225 Sum_probs=33.4
Q ss_pred cCCCCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005259 242 ADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEE 297 (705)
Q Consensus 242 ~~ek~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEe 297 (705)
|-++....-+.||+++.+|+.=+.. +|+....++++.+.+.+..+..|+.
T Consensus 46 Ar~~A~~fA~~ld~~~~kl~~Ms~~------ql~~~~~k~~~si~~q~~~i~~l~~ 95 (301)
T PF06120_consen 46 ARQEAIEFADSLDELKEKLKEMSST------QLRANIAKAEESIAAQKRAIEDLQK 95 (301)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777888888888876653 5666666666666666666555555
No 241
>PRK12704 phosphodiesterase; Provisional
Probab=72.81 E-value=2e+02 Score=33.86 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (705)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (705)
+..+...+..+...++++...+..++++..+...-.+++..
T Consensus 109 e~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~ 149 (520)
T PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISG 149 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333444444444444555555555555544444444444
No 242
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.37 E-value=2.8e+02 Score=35.26 Aligned_cols=22 Identities=5% Similarity=-0.138 Sum_probs=10.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 005259 278 CAGLSSRLQEYKSENAQLEELL 299 (705)
Q Consensus 278 ~~RLrk~~~elks~~aqLEell 299 (705)
..+++++..+++.++..|+..+
T Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~ 203 (1042)
T TIGR00618 182 ALMEFAKKKSLHGKAELLTLRS 203 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555433
No 243
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=71.99 E-value=1.1e+02 Score=30.59 Aligned_cols=108 Identities=16% Similarity=0.125 Sum_probs=67.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005259 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELS-----VYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (705)
Q Consensus 278 ~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~-----~EQ~~l~q~es~~~ealsak~~eie~Le~rl 352 (705)
+.+|++.+.+++..++..=.....+....+....+++..-..+. ..+.+|..... +.-.|..+...-..|..++
T Consensus 29 ~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~-lQ~~L~~~re~E~qLr~rR 107 (159)
T PF05384_consen 29 YERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHE-LQVRLAMLREREKQLRERR 107 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44556666666666555555555555566666667776666663 34566666665 6666777777777777788
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
+.|+..+..++.-+++++.=+-++-=-++-+-..
T Consensus 108 D~LErrl~~l~~tierAE~l~sqi~vvl~yL~~d 141 (159)
T PF05384_consen 108 DELERRLRNLEETIERAENLVSQIGVVLNYLSGD 141 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888877777777777766554443333333333
No 244
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=71.63 E-value=1.8e+02 Score=32.67 Aligned_cols=44 Identities=32% Similarity=0.345 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005259 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (705)
Q Consensus 431 seALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~ 474 (705)
...+.+--..++....-...|+.++..|-++++.+-|-=.++..
T Consensus 186 Qatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e 229 (401)
T PF06785_consen 186 QATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMKE 229 (401)
T ss_pred hcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44444444455555555677777777777777766544333333
No 245
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=71.30 E-value=2.1e+02 Score=33.46 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 563 QLETMASEKAAAEFQLEKEMNRLQEVQSEA 592 (705)
Q Consensus 563 qlE~L~~Er~sL~~qLE~~~~~~~~e~~~~ 592 (705)
.+..+..+...+-..|+++...|+...+.+
T Consensus 381 kl~~f~~~~~klG~~L~~a~~~y~~A~~~L 410 (475)
T PRK10361 381 KMRLFVDDMSAIGQSLDKAQDNYRQAMKKL 410 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666655443
No 246
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=71.23 E-value=59 Score=28.13 Aligned_cols=62 Identities=21% Similarity=0.160 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005259 295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (705)
Q Consensus 295 LEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~ 360 (705)
||..+..++.....+..++..-+.++.....++ +.+..++..+-.++..|..++.++.+++.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ER----d~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRER----DSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445444555555555555555555555433322 22333344444455555555555555543
No 247
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.93 E-value=2.2e+02 Score=33.09 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=11.4
Q ss_pred CCCCCcccCCCCCccc
Q 005259 150 ATPNGEILNENDSDVH 165 (705)
Q Consensus 150 ~~~~~~~~~~~~~~~~ 165 (705)
-+=||-.-|.-++|+|
T Consensus 133 ~efNGk~Fn~le~e~C 148 (493)
T KOG0804|consen 133 EEFNGKQFNSLEPEVC 148 (493)
T ss_pred HHcCCCcCCCCCccce
Confidence 5567877777777765
No 248
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=69.81 E-value=1.7e+02 Score=31.75 Aligned_cols=71 Identities=23% Similarity=0.270 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 005259 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (705)
Q Consensus 410 ~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~q 480 (705)
+..+..+..|-.++.+-...+..++...+..++.-...+..+......|+..++.-+++|+..+.++..+|
T Consensus 147 r~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 147 REERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555565555444444455555555544444444444444434444444444444444444444444
No 249
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=69.50 E-value=1.4e+02 Score=30.52 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=16.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005259 273 RLARVCAGLSSRLQEYKSENAQLEELL 299 (705)
Q Consensus 273 qLa~~~~RLrk~~~elks~~aqLEell 299 (705)
..+.+..+|+-.+..|+++++-||..+
T Consensus 13 ~qa~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 13 RQAQLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666643
No 250
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=68.30 E-value=1.4e+02 Score=30.04 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=34.3
Q ss_pred hhhchhhHHhhhhcCCCCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHH
Q 005259 229 ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQ 286 (705)
Q Consensus 229 ~~~~~~~~~~~~~~~ek~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~ 286 (705)
.++++-+.+...+.++.+..+..-++++...|.........+..+|..-..+|.....
T Consensus 7 ~~~~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~ 64 (158)
T PF09486_consen 7 RTLIQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMT 64 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 4556666777777766666666666666666665554444455555555555554444
No 251
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=68.25 E-value=2.1e+02 Score=32.24 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=7.5
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 005259 452 EQKVAMLEVECATLQQEL 469 (705)
Q Consensus 452 eqQls~LE~elkqLkQeL 469 (705)
+++++.++.+...|+.++
T Consensus 244 ek~i~EfdiEre~LRAel 261 (561)
T KOG1103|consen 244 EKLIEEFDIEREFLRAEL 261 (561)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 252
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=68.18 E-value=1.6e+02 Score=30.83 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 312 RIKQLEQELSVYKSEVTKVESNLAEA 337 (705)
Q Consensus 312 rl~~LQaeL~~EQ~~l~q~es~~~ea 337 (705)
++..+...+...+.+...++..+.+.
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555544444
No 253
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=67.40 E-value=2.4e+02 Score=32.63 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=30.8
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchh-----h--hHHHHHHHHHHHHHHHHHH
Q 005259 507 QRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSRE-----E--HMELEKRYRELTDLLYYKQ 561 (705)
Q Consensus 507 qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q-----~--~~elE~rl~eLtE~L~eKQ 561 (705)
..+++-+|....+.+.+|++....+-+.+.-.... . .-+.+..+.++|-.|-+.+
T Consensus 356 rqnaekql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl 417 (575)
T KOG4403|consen 356 RQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERL 417 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777778888888876555444221111 1 2344555666665555555
No 254
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=67.14 E-value=51 Score=38.29 Aligned_cols=7 Identities=29% Similarity=0.363 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 005259 291 ENAQLEE 297 (705)
Q Consensus 291 ~~aqLEe 297 (705)
++.+|++
T Consensus 79 ~l~~l~~ 85 (525)
T TIGR02231 79 QIRELEA 85 (525)
T ss_pred HHHHHHH
Confidence 3333333
No 255
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=67.00 E-value=1.3e+02 Score=35.56 Aligned_cols=97 Identities=20% Similarity=0.323 Sum_probs=52.8
Q ss_pred hhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005259 249 EQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT 328 (705)
Q Consensus 249 lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~ 328 (705)
-.++++++...|+- ..+|-......|--|.+++....+....+++. .+.+..++..||.+|...+
T Consensus 418 Y~~RI~eLt~qlQ~----adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~ee-------L~~a~~~i~~LqDEL~TTr---- 482 (518)
T PF10212_consen 418 YMSRIEELTSQLQH----ADSKAVHFYAECRALQKRLESAEKEKESLEEE-------LKEANQNISRLQDELETTR---- 482 (518)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----
Confidence 34445554444432 23344555556777777766666665555553 2333345555555655544
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005259 329 KVESNLAEALAAKNSEIETLVSSIDALKKQAALSE 363 (705)
Q Consensus 329 q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K 363 (705)
..|.++++.+.+-+..|-++|.....++..+|
T Consensus 483 ---~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 483 ---RNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666666666666666665555
No 256
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=66.79 E-value=1.7e+02 Score=30.67 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=28.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 358 QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (705)
Q Consensus 358 el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~a 408 (705)
.+..+-.++..++.....-...+...-.....++..+|..+...++.|...
T Consensus 93 ~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~ 143 (247)
T PF06705_consen 93 RLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNE 143 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433344667777788888888777665
No 257
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.78 E-value=2.4e+02 Score=32.30 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005259 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (705)
Q Consensus 351 rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le 403 (705)
++..+.+.+.+.+.|.+.+++++.-+.+-| ..+ +.+|.-+|.+++.+++
T Consensus 245 e~~~~~~~LqEEr~R~erLEeqlNd~~elH---q~E-i~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 245 EYQFILEALQEERYRYERLEEQLNDLTELH---QNE-IYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHhHHHHHH
Confidence 445555566777777777776654433332 344 5566666666666554
No 258
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=66.64 E-value=76 Score=27.49 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (705)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (705)
.++..|+++++.+.+++.........+-.|.+.+...+..
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~ 44 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD 44 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333333
No 259
>PLN02939 transferase, transferring glycosyl groups
Probab=66.62 E-value=3.6e+02 Score=34.35 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=7.1
Q ss_pred CCcccCCCCC
Q 005259 153 NGEILNENDS 162 (705)
Q Consensus 153 ~~~~~~~~~~ 162 (705)
||++.|-++.
T Consensus 72 ~~~~~~~~~~ 81 (977)
T PLN02939 72 NGQLENTSLR 81 (977)
T ss_pred cccccccccc
Confidence 6777777763
No 260
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=66.43 E-value=1.9e+02 Score=31.99 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 005259 517 LEAEVQKMRVEMAA 530 (705)
Q Consensus 517 ~E~elqkLr~e~~~ 530 (705)
++-|+|+||..+.-
T Consensus 120 lQgEmQ~LrDKLAi 133 (351)
T PF07058_consen 120 LQGEMQQLRDKLAI 133 (351)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555666655533
No 261
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=65.85 E-value=1.3e+02 Score=29.10 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 005259 343 SEIETLVSSIDALKKQAALSEGNLA 367 (705)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rle 367 (705)
.++.+|-.=+.-++.++...|.+|.
T Consensus 84 ~EldDLL~ll~Dle~K~~kyk~rLk 108 (136)
T PF04871_consen 84 SELDDLLVLLGDLEEKRKKYKERLK 108 (136)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 262
>PRK10698 phage shock protein PspA; Provisional
Probab=65.55 E-value=1.8e+02 Score=30.41 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005259 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNS 343 (705)
Q Consensus 286 ~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~ 343 (705)
..+.--++.+++.+...+.-+.........++..+...+......+..-..++.++++
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~E 84 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKE 84 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 3334444444444444433344444445555555555555555555544444444443
No 263
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=65.30 E-value=2e+02 Score=30.98 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=24.2
Q ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259 267 GQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (705)
Q Consensus 267 l~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ 324 (705)
|..++.+++....+......+...-....+..-..+.++.+.++.++..|...+..++
T Consensus 199 L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~ 256 (297)
T PF02841_consen 199 LTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEER 256 (297)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555444444443333333333333333344444444444444444444433
No 264
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=64.94 E-value=2.3e+02 Score=31.38 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (705)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~ 587 (705)
..++.++......|..-+.-+..|..|+.-|..+++.+..+...
T Consensus 266 ~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~ 309 (344)
T PF12777_consen 266 QELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKN 309 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcc
Confidence 34444555555555555555555666666666555555544443
No 265
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.67 E-value=70 Score=31.53 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 515 SSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS 569 (705)
Q Consensus 515 ~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~ 569 (705)
..+..++..|+.++..+... ....++...+..|..++...+..++.|..
T Consensus 89 ~~l~~~~k~l~~eL~~L~~~------~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 89 AELKKEVKSLEAELASLSSE------PTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555443321 12356777777777777777777777765
No 266
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=64.61 E-value=3.2e+02 Score=33.06 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEER 406 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~ 406 (705)
.+..++..++.++.........++.-...+..++ ..=++.--++.|+-+.+++-.+.
T Consensus 382 ~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r---~dW~laEae~Ll~lA~q~L~l~~ 438 (656)
T PRK06975 382 QLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNR---DDWMIAEVEQMLSSASQQLQLTG 438 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHHHHHhC
Confidence 4445555555555555555555555444444333 33345556677888888877763
No 267
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=64.50 E-value=3.4e+02 Score=33.29 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584 (705)
Q Consensus 543 ~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~ 584 (705)
..++...+..|...+..-+++++.+....+.+...|+....+
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k 602 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFK 602 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777888777777777777777777777777766544
No 268
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=64.45 E-value=2.7e+02 Score=32.10 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005259 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (705)
Q Consensus 419 Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r 478 (705)
|..+++++.++...+...+.-.+.-.+++...+..++...|.++..|+.+...+..+.-+
T Consensus 14 r~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 14 RLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443333333333344444555555555555555555555555444444
No 269
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.14 E-value=1.6e+02 Score=31.34 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005259 436 RIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (705)
Q Consensus 436 elQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~ 477 (705)
+|.-++++...+-.+|...+..++.+++..+.+|..++.+..
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s 180 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS 180 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555544443333
No 270
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=63.88 E-value=1.9e+02 Score=31.62 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=14.7
Q ss_pred cchHHHHHHHHHhhhhHHHHHHHHH
Q 005259 267 GQSKEARLARVCAGLSSRLQEYKSE 291 (705)
Q Consensus 267 l~~ke~qLa~~~~RLrk~~~elks~ 291 (705)
|+.||.-++-+++||++....+.-|
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dR 87 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDR 87 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456666666677776665544433
No 271
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=63.77 E-value=2e+02 Score=30.39 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (705)
Q Consensus 428 ~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e 475 (705)
..+..++++.++.|.+-+.+ .+..+....++++..+..=|......
T Consensus 123 ~~l~~~l~ea~~mL~emr~r--~f~~~~~~Ae~El~~A~~LL~~v~~~ 168 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEMRKR--DFTPQRQNAEDELKEAEDLLSRVQKW 168 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777888888777766 35555566666655555444444433
No 272
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=63.50 E-value=94 Score=26.47 Aligned_cols=10 Identities=20% Similarity=0.175 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 005259 316 LEQELSVYKS 325 (705)
Q Consensus 316 LQaeL~~EQ~ 325 (705)
||.+|..|-.
T Consensus 2 lQsaL~~Eir 11 (61)
T PF08826_consen 2 LQSALEAEIR 11 (61)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHHHHH
Confidence 3444444333
No 273
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=63.50 E-value=2.2e+02 Score=31.22 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 293 AQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESN 333 (705)
Q Consensus 293 aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~ 333 (705)
+|-|--+|.++.+.+.-++++..=+.|...++..+.+|+++
T Consensus 64 QQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 64 QQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444444555555555554444445555555555555543
No 274
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=63.44 E-value=66 Score=34.07 Aligned_cols=67 Identities=27% Similarity=0.337 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHH
Q 005259 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMR 525 (705)
Q Consensus 446 aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr 525 (705)
....+++.++..+-.+-..|..++..++.++...+ ..|+.+..|..++ +-.+..+..++.+|+
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~----------erlk~le~E~s~L-------eE~~~~l~~ev~~L~ 197 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQ----------ERLKRLEVENSRL-------EEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH-------HHHHHhchhHHHHHH
Confidence 33445555555555555555555555555554444 2344444444333 233344666777777
Q ss_pred HHHH
Q 005259 526 VEMA 529 (705)
Q Consensus 526 ~e~~ 529 (705)
..|.
T Consensus 198 ~r~~ 201 (290)
T COG4026 198 KRWD 201 (290)
T ss_pred HHHH
Confidence 7773
No 275
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=62.93 E-value=1.6e+02 Score=31.05 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005259 561 QTQLETMASEKAAAEFQLE 579 (705)
Q Consensus 561 Q~qlE~L~~Er~sL~~qLE 579 (705)
+.+|..+..|...+..|+.
T Consensus 168 e~~L~~v~~eIe~~~~~~~ 186 (262)
T PF14257_consen 168 ERELSRVRSEIEQLEGQLK 186 (262)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 276
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=62.30 E-value=1.4e+02 Score=28.16 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 289 KSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (705)
Q Consensus 289 ks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~ 322 (705)
.+...+|+..+..++.-......++..|++.+..
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~e 69 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDE 69 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 277
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=62.26 E-value=2e+02 Score=29.85 Aligned_cols=22 Identities=36% Similarity=0.335 Sum_probs=8.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 005259 449 GELEQKVAMLEVECATLQQELQ 470 (705)
Q Consensus 449 ~eLeqQls~LE~elkqLkQeLq 470 (705)
..|+...+.|+-.-.+|+++-+
T Consensus 180 ~~L~~~~~~Le~qk~~L~~eq~ 201 (206)
T PF14988_consen 180 QKLEARKSQLEKQKQQLQQEQW 201 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334333334443333
No 278
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=62.21 E-value=3.4e+02 Score=32.91 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259 436 RIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (705)
Q Consensus 436 elQrkLeEe~aea~eLeqQls~LE~elkqLkQeL 469 (705)
.+++++.--+.++..|++|++.-+.+..++...+
T Consensus 228 qye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~l 261 (861)
T KOG1899|consen 228 QYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTL 261 (861)
T ss_pred HHHhhcccccchhhhHHHHHhhhhhHHHHHHHHH
Confidence 4455555555677777777777777766655444
No 279
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=62.13 E-value=3e+02 Score=31.81 Aligned_cols=78 Identities=12% Similarity=0.271 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHH
Q 005259 420 EVELEHRAAEASMALARIQRIADERTAKA-----GELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQ 494 (705)
Q Consensus 420 e~eLEee~~eLseALaelQrkLeEe~aea-----~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~ 494 (705)
...|......|..-+..+|..+++-+.-| .=...++..+.-++..+..+|..|+.-+..++. ..+
T Consensus 208 k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp----------~Wk 277 (424)
T PF03915_consen 208 KKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKP----------IWK 277 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH----------HHH
Confidence 44444444455555566666655555333 333444444555555555555555555554441 122
Q ss_pred -HHHHHHHHHHhhh
Q 005259 495 -AWQDEVERARQGQ 507 (705)
Q Consensus 495 -~Lk~EL~~~rq~q 507 (705)
-|..||...-+.+
T Consensus 278 KiWE~EL~~V~eEQ 291 (424)
T PF03915_consen 278 KIWESELQKVCEEQ 291 (424)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 2667776655444
No 280
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=62.12 E-value=3.2e+02 Score=32.20 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=4.7
Q ss_pred hhhhHHHHHH
Q 005259 629 AGASVQLQKA 638 (705)
Q Consensus 629 ~~~~~~vk~A 638 (705)
+|...+|.=|
T Consensus 443 gGe~~rv~la 452 (563)
T TIGR00634 443 GGELSRVMLA 452 (563)
T ss_pred HhHHHHHHHH
Confidence 4544555443
No 281
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=61.87 E-value=65 Score=32.80 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (705)
Q Consensus 283 k~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~ 322 (705)
+.++-+...+..|++.++.++.-|+.++++|..|+..|..
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~ 118 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT 118 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 4556666777888887777777777777777777777644
No 282
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.71 E-value=49 Score=32.65 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 005259 390 ALREELASVER 400 (705)
Q Consensus 390 SLE~eLkslq~ 400 (705)
.++.++..++.
T Consensus 120 ~l~~e~~~l~~ 130 (169)
T PF07106_consen 120 ELEEEIEELEE 130 (169)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 283
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.84 E-value=3.2e+02 Score=31.49 Aligned_cols=40 Identities=25% Similarity=0.181 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (705)
Q Consensus 543 ~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (705)
.-.|..+-.++...|..-.---+.|..|.-+|..|||...
T Consensus 415 ~ql~~~~r~~~~~~l~a~ehv~e~l~~ei~~L~eqle~e~ 454 (542)
T KOG0993|consen 415 AQLYKQRRTSLQQELDASEHVQEDLVKEIQSLQEQLEKER 454 (542)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777888889999999888743
No 284
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=59.79 E-value=4.7e+02 Score=33.37 Aligned_cols=151 Identities=16% Similarity=0.242 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH------hHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAEREL------SRSYEA-----RIKQLEQELSVYKSEVTKVESNLAEAL 338 (705)
Q Consensus 270 ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~------~~~L~~-----rl~~LQaeL~~EQ~~l~q~es~~~eal 338 (705)
++.+|...|..=...+.-++-++..|+...-..+++ ...|.. ....-..++. ++.+........+
T Consensus 189 ~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~----~~k~~~~r~k~~~ 264 (1072)
T KOG0979|consen 189 DEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYN----AYKQAKDRAKKEL 264 (1072)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHH----HHHHHHHHHHHHH
Confidence 344555555555555555555555555544433332 222222 1111122222 2333333344444
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 339 AAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT-------ETRMIQALREELASVERRAEEERAAHNA 411 (705)
Q Consensus 339 sak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~-------ekeilqSLE~eLkslq~~le~E~~aH~a 411 (705)
-.+...+..+......|+.+......+++.+..++..+..++.++ +++ +..+...+.+++.+.+.-.+.--.
T Consensus 265 r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~-v~~~~~~le~lk~~~~~rq~~i~~ 343 (1072)
T KOG0979|consen 265 RKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDE-VEEKKNKLESLKKAAEKRQKRIEK 343 (1072)
T ss_pred HHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777777777777777776666666653 333 444555566666665543333334
Q ss_pred HHHHHHHHHHHHHH
Q 005259 412 TKMAAMEREVELEH 425 (705)
Q Consensus 412 Tk~ea~~Re~eLEe 425 (705)
++....+....|..
T Consensus 344 ~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 344 AKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHhhhhh
Confidence 44444555555533
No 285
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=59.69 E-value=2.8e+02 Score=30.61 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 005259 441 ADERTAKAGELEQKVAMLEVEC 462 (705)
Q Consensus 441 LeEe~aea~eLeqQls~LE~el 462 (705)
++.-+.++.++..++..+..+.
T Consensus 167 i~~lk~~~~e~~eki~~la~ea 188 (294)
T COG1340 167 IDELKKKAREIHEKIQELANEA 188 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443333
No 286
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=59.08 E-value=2.7e+02 Score=30.29 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=21.1
Q ss_pred CCCCCcccCCCCCccccCCCCCCCCC
Q 005259 150 ATPNGEILNENDSDVHLNHPPSPLPP 175 (705)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (705)
.-+||+|.|+.+.-+.-.-|+|++|.
T Consensus 26 ~~s~~dl~d~e~d~~~s~~~A~~~~t 51 (330)
T KOG2991|consen 26 RRSFGDLEDDEDDIFGSTTVAPGVRT 51 (330)
T ss_pred hhhccCccccccccccCCCCCCCCcc
Confidence 66899999999988777888886654
No 287
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=58.77 E-value=3.3e+02 Score=31.25 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 309 YEARIKQLEQELSVYKSEVTKVES 332 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~es 332 (705)
.+..+..||....++-+-+.+.++
T Consensus 350 HQkkiEdLQRqHqRELekLreEKd 373 (593)
T KOG4807|consen 350 HQKKIEDLQRQHQRELEKLREEKD 373 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777666555554544443
No 288
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=58.75 E-value=2.3e+02 Score=29.34 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005259 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKN 342 (705)
Q Consensus 312 rl~~LQaeL~~EQ~~l~q~es~~~ealsak~ 342 (705)
....++..+...+......+..-..++.+++
T Consensus 53 ~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~ 83 (219)
T TIGR02977 53 DKKELERRVSRLEAQVADWQEKAELALSKGR 83 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3334444444444444444443444444333
No 289
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=58.64 E-value=81 Score=28.65 Aligned_cols=67 Identities=19% Similarity=0.334 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl 376 (705)
|-.+...++.++...+..+......+......+ ...+.|..+...+..++..++..+..++.++..+
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666555432222 3444555555555555555555555555555443
No 290
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=58.42 E-value=3.7e+02 Score=31.70 Aligned_cols=7 Identities=43% Similarity=0.572 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 005259 395 LASVERR 401 (705)
Q Consensus 395 Lkslq~~ 401 (705)
|+.++..
T Consensus 154 ~~~~~~~ 160 (514)
T TIGR03319 154 LEEVEEE 160 (514)
T ss_pred HHHHHHH
Confidence 3333333
No 291
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=58.01 E-value=63 Score=32.79 Aligned_cols=66 Identities=20% Similarity=0.317 Sum_probs=40.5
Q ss_pred hhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005259 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (705)
Q Consensus 248 ~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l 327 (705)
+.|..|......|..+++. ...-|+.....+..++..||.. +.+.+.|.++...|+.+|..-+..+
T Consensus 102 QVqqeL~~tf~rL~~~Vd~----------~~~eL~~eI~~L~~~i~~le~~----~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQ----------TKNELEDEIKQLEKEIQRLEEI----QSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp --------HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777777764 5666666666777777777663 4457777888888888887765544
No 292
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.70 E-value=1.3e+02 Score=26.28 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHH
Q 005259 366 LASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 366 leele~E~~rl~e~l~~~eke 386 (705)
-..+..++.+++++++.-..+
T Consensus 41 ~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333
No 293
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=57.49 E-value=2e+02 Score=34.49 Aligned_cols=14 Identities=29% Similarity=0.076 Sum_probs=8.0
Q ss_pred hHHhhhhcCCCCch
Q 005259 235 RKQQALKADDPPTK 248 (705)
Q Consensus 235 ~~~~~~~~~ek~~~ 248 (705)
+.-.++||.+...-
T Consensus 260 tqgienkAf~~nt~ 273 (832)
T KOG2077|consen 260 TQGIENKAFDRNTE 273 (832)
T ss_pred cccchhhccccccc
Confidence 33456677776553
No 294
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=57.24 E-value=1.6e+02 Score=31.45 Aligned_cols=31 Identities=10% Similarity=-0.016 Sum_probs=17.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 356 KKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 356 e~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
..+=.+.|.|..++|+|+++..+.+..+..+
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~E 115 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRRE 115 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666776666655554444444
No 295
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=57.20 E-value=3.3e+02 Score=33.22 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHhhhhhcchHHHHHHH---HHhhhhHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 248 KEQDQLDEAQGLLKTTISTGQSKEARLAR---VCAGLSSRLQ---EYKSENAQLEELLVAERELSRSYEARIKQLEQELS 321 (705)
Q Consensus 248 ~lqkQLee~n~~LrsE~eal~~ke~qLa~---~~~RLrk~~~---elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~ 321 (705)
.+...+-.....|...........++|.. ....|.+.+. .+...+..|+.+.....++...|++++..|.+.+.
T Consensus 179 ~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~ 258 (670)
T KOG0239|consen 179 KLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELK 258 (670)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 322 VYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 322 ~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
...........++.+.+.....++..|......+.... ..+..-.++.++...++.++
T Consensus 259 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 259 ELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCc
No 296
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=57.02 E-value=2.9e+02 Score=30.03 Aligned_cols=95 Identities=19% Similarity=0.277 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHH----HHHHHHHHHHHhHHHHH
Q 005259 390 ALREELASVERRAEEERAAHNATKMAAMEREVELEHRA-AEASMA--LARIQRIADERT----AKAGELEQKVAMLEVEC 462 (705)
Q Consensus 390 SLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~-~eLseA--LaelQrkLeEe~----aea~eLeqQls~LE~el 462 (705)
++-.+|+.+++- .-|+..+-++--+++.++..+-+.. ..++.. +..+++.+.+.. .++..+++++..+..|.
T Consensus 114 ~k~~dlk~~R~L-aseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de 192 (267)
T PF10234_consen 114 SKIQDLKAARQL-ASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDE 192 (267)
T ss_pred hhhhhHHHHHHH-HHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456665544 3466666666666777777665544 111111 233333333333 44566677777777777
Q ss_pred HHHHHHHHHHHHHHHHcccCChH
Q 005259 463 ATLQQELQDMEARLKRGQKKSPE 485 (705)
Q Consensus 463 kqLkQeLq~lE~e~~r~qek~~~ 485 (705)
..|..+++.-..+++|.++.+..
T Consensus 193 ~~Le~KIekkk~ELER~qKRL~s 215 (267)
T PF10234_consen 193 ANLEAKIEKKKQELERNQKRLQS 215 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777666644433
No 297
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=57.00 E-value=50 Score=28.27 Aligned_cols=49 Identities=16% Similarity=0.324 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTK 329 (705)
Q Consensus 281 Lrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q 329 (705)
|..++.++..+++-+|+.+..+.+.....+..|..|+..+.....-+..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666655555555555555554443333
No 298
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=55.55 E-value=5.5e+02 Score=32.83 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 005259 549 RYRELTDLLYYKQTQLET----MASEKAAAEFQLEKEMNRLQEV 588 (705)
Q Consensus 549 rl~eLtE~L~eKQ~qlE~----L~~Er~sL~~qLE~~~~~~~~e 588 (705)
.|++|+..+...-..++. +.+.++-|.-.|+.+..++...
T Consensus 871 el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~ 914 (1072)
T KOG0979|consen 871 ELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINER 914 (1072)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333 3445666777777777665543
No 299
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=55.20 E-value=4.7e+02 Score=31.93 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 559 YKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (705)
Q Consensus 559 eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e 588 (705)
.++.++..|+.+....+.-.+.+..|..+.
T Consensus 367 ~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~ 396 (726)
T PRK09841 367 STQQEVLRLSRDVEAGRAVYLQLLNRQQEL 396 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666665544
No 300
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=54.67 E-value=4e+02 Score=30.97 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005259 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (705)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~ 404 (705)
+..+.+|+ .++.+++.+..+..+|++++++.+.+--+--+++..+..+ ..|+.+..+++-
T Consensus 245 ~km~kdle-~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea--~rl~elreg~e~ 304 (575)
T KOG4403|consen 245 NKMMKDLE-GLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEA--PRLSELREGVEN 304 (575)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhh--hhhhhhhcchhH
Confidence 33444554 5666777777777777777777655544444444442211 124555555544
No 301
>PF14992 TMCO5: TMCO5 family
Probab=54.30 E-value=3.3e+02 Score=29.84 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT---------ETRMIQALREELASVERRAEEERAAHNATKMAAM 417 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~---------ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~ 417 (705)
+|++.++.+...-..+=.++.+.+..+.+|..+++.. ++.+....+..|+.++
T Consensus 8 dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le------------------ 69 (280)
T PF14992_consen 8 DLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELE------------------ 69 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHH------------------
Confidence 4555666666666666666666666666666655542 1111111222221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 418 EREVELEHRAAEASMALARIQRIADERT 445 (705)
Q Consensus 418 ~Re~eLEee~~eLseALaelQrkLeEe~ 445 (705)
..-..||..+..++..+.++|+++++.-
T Consensus 70 ~e~~~LE~~ne~l~~~~~elq~k~~e~~ 97 (280)
T PF14992_consen 70 LETAKLEKENEHLSKSVQELQRKQDEQE 97 (280)
T ss_pred hhhHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 1234456666667777777777776555
No 302
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=54.18 E-value=4e+02 Score=30.82 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005259 388 IQALREELASVERRAEEE 405 (705)
Q Consensus 388 lqSLE~eLkslq~~le~E 405 (705)
+++|+.+|..+++-+..-
T Consensus 157 l~~lrrdLavlRQ~~~~~ 174 (426)
T smart00806 157 LKSLQRELAVLRQTHNSF 174 (426)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555565665555555443
No 303
>PRK00106 hypothetical protein; Provisional
Probab=54.00 E-value=4.5e+02 Score=31.32 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=3.3
Q ss_pred hHhhhcch
Q 005259 650 TRFLWRYP 657 (705)
Q Consensus 650 g~fLRRyP 657 (705)
+.++++|+
T Consensus 402 a~ll~~~~ 409 (535)
T PRK00106 402 MEFARKYK 409 (535)
T ss_pred HHHHHHcC
Confidence 34444443
No 304
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=53.73 E-value=39 Score=32.65 Aligned_cols=49 Identities=27% Similarity=0.263 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV 330 (705)
Q Consensus 282 rk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~ 330 (705)
.--=++++.+++.||-..+.+.-....|..+|..||-+|.+++.-+...
T Consensus 24 eiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~ 72 (134)
T PF08232_consen 24 EIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKL 72 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344688888999999888888888899999999999999988877653
No 305
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=53.42 E-value=81 Score=33.67 Aligned_cols=58 Identities=12% Similarity=0.199 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005259 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (705)
Q Consensus 419 Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~ 476 (705)
|...||.-...-..++.+++..++.-..++..|+.+++.+.+++++++++-.++-.++
T Consensus 41 r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 41 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333334555666666666666666666666666666666655554443333
No 306
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=53.40 E-value=4.4e+02 Score=30.99 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005259 421 VELEHRAAEASMALARI 437 (705)
Q Consensus 421 ~eLEee~~eLseALael 437 (705)
..|+.....|.....++
T Consensus 102 ~~l~~~~~~L~~~F~~L 118 (475)
T PRK10361 102 RQMINSEQRLSEQFENL 118 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 307
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=53.27 E-value=2.5e+02 Score=28.13 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (705)
Q Consensus 308 ~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (705)
.|.....+|+.+..+++..+.+.+..+...- +.+.++.+.+..+++.++.++++|...
T Consensus 54 ~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~E--------------d~~~~e~k~L~~~v~~Le~e~r~L~~~ 111 (158)
T PF09744_consen 54 LLREDNEQLETQYEREKELRKQAEEELLELE--------------DQWRQERKDLQSQVEQLEEENRQLELK 111 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666655444332 344444555555555555555555533
No 308
>PRK02119 hypothetical protein; Provisional
Probab=53.26 E-value=77 Score=27.65 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005259 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (705)
Q Consensus 281 Lrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~ 325 (705)
+..++..+..+++-.|+.+..+.+....-+..|..|+..|.....
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777777666666666666666666555443
No 309
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=53.20 E-value=3.5e+02 Score=29.80 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHHHHHH
Q 005259 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELT--------ETRMIQALREELASVERRAE 403 (705)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~--------ekeilqSLE~eLkslq~~le 403 (705)
..+..+++++...+.++.+++..+...+.+.... ....++.|+.++..++..+.
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~ 231 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLA 231 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777766666655441 12234455555555554443
No 310
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=52.75 E-value=44 Score=37.49 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=14.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 355 LKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 355 Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
+...+..++.+++.++..+..+.+....++++
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~ 173 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKR 173 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444444444555554444444444444444
No 311
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=52.75 E-value=37 Score=31.39 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (705)
Q Consensus 346 e~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (705)
.+|...+++++++..-++.++.+++.++++++.+++.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~k 40 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNK 40 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999887766
No 312
>PRK02793 phi X174 lysis protein; Provisional
Probab=52.59 E-value=81 Score=27.41 Aligned_cols=45 Identities=22% Similarity=0.205 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005259 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (705)
Q Consensus 281 Lrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~ 325 (705)
+..++.+|..+++-.|+.+..+.+.....+..|..|+..|.....
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777776666666666666666666666555443
No 313
>PRK00295 hypothetical protein; Provisional
Probab=52.57 E-value=95 Score=26.68 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (705)
Q Consensus 281 Lrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ 324 (705)
+..++.++..+++-.|+.+..+.+.....+..|..|+..|....
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~ 46 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777666666666655556655555555443
No 314
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=51.05 E-value=2.3e+02 Score=28.31 Aligned_cols=65 Identities=26% Similarity=0.322 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005259 396 ASVERRAEEERAAHNATKMAAMEREV--------------ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEV 460 (705)
Q Consensus 396 kslq~~le~E~~aH~aTk~ea~~Re~--------------eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~ 460 (705)
..+...++.|..+|..|+.-...... .|+.+......++..++.+...+..+.+.|..+|+.++.
T Consensus 6 ~~~~~~l~~Ek~eHaKTK~lLake~EKLqfAlgeieiL~kQl~rek~afe~a~~~vk~k~~~Es~k~dqL~~KC~~~~~ 84 (153)
T PF15175_consen 6 EAVEKKLEEEKAEHAKTKALLAKESEKLQFALGEIEILSKQLEREKLAFEKALGSVKSKVLQESSKKDQLITKCNEIES 84 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566665543333322 234555666777788888888888888888888877653
No 315
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=50.80 E-value=73 Score=34.83 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (705)
+..+.++|.+++..|+.+-.++|.++++++.|++.+++-+..
T Consensus 246 kRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 246 KRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999999999999999999999999998876655
No 316
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=50.66 E-value=1.8e+02 Score=26.06 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 560 KQTQLETMASEKAAAEFQLEKEMNRLQE 587 (705)
Q Consensus 560 KQ~qlE~L~~Er~sL~~qLE~~~~~~~~ 587 (705)
-....+.|..|.++|.-+|--+..++++
T Consensus 51 L~~en~qLk~E~~~WqerLr~LLGkm~~ 78 (79)
T PRK15422 51 LERENNHLKEQQNGWQERLQALLGRMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455667778888888888888777653
No 317
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.05 E-value=5.6e+02 Score=31.32 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhHH
Q 005259 439 RIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLE 518 (705)
Q Consensus 439 rkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~E 518 (705)
+++++....-..|.+.+...++++..+-..|...-.......+... .-..++..+..-|+.+|.+...-...|..+-
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~---tLke~l~~l~~~le~lr~qk~eR~~ef~el~ 130 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEG---TLKEQLESLKPYLEGLRKQKDERRAEFKELY 130 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544444555555555555555555544332222221111122 2224555566666666666655566777788
Q ss_pred HHHHHHHHHHHHhh-------hhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 519 AEVQKMRVEMAAMK-------RDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQL 578 (705)
Q Consensus 519 ~elqkLr~e~~~~k-------~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qL 578 (705)
.++++|..++.... .+...++...-.+|..+|++|.++-...=..+.++..+...|--.|
T Consensus 131 ~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~L 197 (660)
T KOG4302|consen 131 HQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVL 197 (660)
T ss_pred HHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888874320 1111122222345555666665555554455555555555444433
No 318
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=50.01 E-value=5.6e+02 Score=31.29 Aligned_cols=23 Identities=9% Similarity=-0.051 Sum_probs=15.4
Q ss_pred chhhhhhhhccccccccc-ccccc
Q 005259 90 ATLAVEKETITTGKTQKN-GEQQQ 112 (705)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~-~~~~~ 112 (705)
..+.+|.|.|.|..++.. .+.+.
T Consensus 85 ~~~~teieiLkSr~v~~~VV~~L~ 108 (726)
T PRK09841 85 PESAPEIQLLQSRMILGKTIAELN 108 (726)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhC
Confidence 345667788888888765 44444
No 319
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=49.79 E-value=5e+02 Score=30.63 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMERE 420 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re 420 (705)
..++++.|+..+.++..=++....++.++..-+.+=-..++.-|..|+...+..+.+|+...+.|+.. +..+|....
T Consensus 138 e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~aIe~Er~~---m~EEAiqe~ 214 (508)
T PF00901_consen 138 EENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKIDALKNAIEVEREG---MQEEAIQEI 214 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHH
Confidence 56678888888888888888888888888877777667777779999999999999999999887764 444444443
Q ss_pred HHH
Q 005259 421 VEL 423 (705)
Q Consensus 421 ~eL 423 (705)
.++
T Consensus 215 ~dm 217 (508)
T PF00901_consen 215 ADM 217 (508)
T ss_pred hcc
Confidence 333
No 320
>PRK04406 hypothetical protein; Provisional
Probab=49.60 E-value=93 Score=27.34 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (705)
Q Consensus 281 Lrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ 324 (705)
+..++..|..+++-+|+.+..+.+.....+..|..|+..|....
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666655555555555555554443
No 321
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=49.10 E-value=5.1e+02 Score=30.51 Aligned_cols=14 Identities=21% Similarity=0.518 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 005259 396 ASVERRAEEERAAH 409 (705)
Q Consensus 396 kslq~~le~E~~aH 409 (705)
+.++..++.|+..|
T Consensus 363 ~~i~~~v~~Er~~~ 376 (582)
T PF09731_consen 363 KEIKEKVEQERNGR 376 (582)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445554443
No 322
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=49.06 E-value=2.1e+02 Score=26.09 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005259 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361 (705)
Q Consensus 282 rk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~ 361 (705)
.-.+........-||.++.....++..|.+....+...+.....-+..++. +...+...+..+..|+.-...|+.=.++
T Consensus 13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~-~l~~Id~Ie~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQP-YLQQIDQIEEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666677888888888888888888888888888777776666665 4434444444555555444444444444
Q ss_pred HHhH
Q 005259 362 SEGN 365 (705)
Q Consensus 362 ~K~r 365 (705)
++.+
T Consensus 92 LE~k 95 (99)
T PF10046_consen 92 LESK 95 (99)
T ss_pred HHHH
Confidence 4443
No 323
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=48.80 E-value=5.3e+02 Score=30.63 Aligned_cols=83 Identities=14% Similarity=0.164 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 315 QLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVS---------------SIDALKKQAALSEGNLASLQMNMESIMRN 379 (705)
Q Consensus 315 ~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~---------------rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (705)
++..-....+.++...+..+..+|+++.+.+..-+- .=..+..+..++-.++-++-+|+-.-.-+
T Consensus 110 ~irr~q~~q~~erk~~~qe~~~rl~~L~~~Lrqee~~re~a~~aL~k~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l~ 189 (531)
T PF15450_consen 110 QIRRKQALQDSERKGSEQEAGLRLSKLQDMLRQEEQGREDACSALQKSQEEDSQKVDNEVARMQAQITKLGEEMSLRFLK 189 (531)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcchhhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444555555667777766666554441 22333344444555555555554433333
Q ss_pred hhh-----HHHHHHHHHHHHHHHH
Q 005259 380 REL-----TETRMIQALREELASV 398 (705)
Q Consensus 380 l~~-----~ekeilqSLE~eLksl 398 (705)
.+. +.+. ..++|..+++.
T Consensus 190 reakl~~~lqk~-f~alEk~mka~ 212 (531)
T PF15450_consen 190 REAKLCSFLQKS-FLALEKRMKAQ 212 (531)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH
Confidence 333 2444 33555555554
No 324
>PRK00736 hypothetical protein; Provisional
Probab=47.32 E-value=1.2e+02 Score=26.16 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005259 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (705)
Q Consensus 282 rk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~ 325 (705)
..++.+|..+++-+|+.+..+.+....-+..|..|+..|....+
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777776666666666555566555555554443
No 325
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=46.91 E-value=2.6e+02 Score=30.77 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=12.1
Q ss_pred hHHHHhhhhhHHHHHHHHHHHH
Q 005259 507 QRDAENKLSSLEAEVQKMRVEM 528 (705)
Q Consensus 507 qr~l~~kl~s~E~elqkLr~e~ 528 (705)
+|++-..|+.+.+.+++...++
T Consensus 278 qrdanrqisd~KfKl~KaEQei 299 (302)
T PF09738_consen 278 QRDANRQISDYKFKLQKAEQEI 299 (302)
T ss_pred hhHHHHHHHHHHHHHHHHHHhh
Confidence 4444455566666666655444
No 326
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=46.88 E-value=98 Score=34.19 Aligned_cols=13 Identities=15% Similarity=0.233 Sum_probs=6.2
Q ss_pred hHHHhhhhhhccc
Q 005259 51 RIKAQRRHSADES 63 (705)
Q Consensus 51 ~~~~~~~~~~~e~ 63 (705)
+..++.+|...+|
T Consensus 77 ~~~a~~~L~~a~P 89 (344)
T PF12777_consen 77 KEEAEEELAEAEP 89 (344)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555544
No 327
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.02 E-value=6.8e+02 Score=31.08 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=11.7
Q ss_pred ccccccccCccCcccccccccccc
Q 005259 125 EQSKDMSKHDADRVEIPETFTDLD 148 (705)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~ 148 (705)
.|...+.++......+....+.+|
T Consensus 248 ~L~~~i~~~~~~l~~~~~~l~~lD 271 (771)
T TIGR01069 248 TLSEKVQEYLLELKFLFKEFDFLD 271 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444444444444
No 328
>PLN03188 kinesin-12 family protein; Provisional
Probab=45.92 E-value=8.4e+02 Score=32.14 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=12.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhh
Q 005259 513 KLSSLEAEVQKMRVEMAAMKR 533 (705)
Q Consensus 513 kl~s~E~elqkLr~e~~~~k~ 533 (705)
+....+.|..++.+++..+|+
T Consensus 1219 r~~~~eqe~~~~~k~~~klkr 1239 (1320)
T PLN03188 1219 RAMDAEQEAAEAYKQIDKLKR 1239 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666655543
No 329
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=45.88 E-value=3.7e+02 Score=27.96 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005259 288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (705)
Q Consensus 288 lks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rle 367 (705)
+...+.+||. ....|+..+..+..+....-..|...|......|...+..-.++..+.-.++..+..++..+.
T Consensus 134 W~~~n~~Le~-------~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~ 206 (221)
T PF05700_consen 134 WLIHNEQLEA-------MLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIE 206 (221)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhh
Q 005259 368 SLQMNMESIMRNRE 381 (705)
Q Consensus 368 ele~E~~rl~e~l~ 381 (705)
.+..+....++++.
T Consensus 207 ~l~~~~~~~~~~~~ 220 (221)
T PF05700_consen 207 QLKRKAAELKENQQ 220 (221)
T ss_pred HHHHHHHHHhcccc
No 330
>PRK04325 hypothetical protein; Provisional
Probab=45.76 E-value=1.2e+02 Score=26.52 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (705)
Q Consensus 280 RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ 324 (705)
.+..++.+|..+++-.|+.+..|.+....-+..|..|+..|....
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY 50 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777666666666655555655555554443
No 331
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=44.88 E-value=4.8e+02 Score=28.98 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=29.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA 337 (705)
Q Consensus 277 ~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ea 337 (705)
+..-|.+-..+..+....++.--.-+......|..+.+.+..+|+..|..+.+.+..+.++
T Consensus 246 ~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~r 306 (384)
T KOG0972|consen 246 VGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSR 306 (384)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 4445555555555444444441111112233444455566666666666666655544444
No 332
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=44.83 E-value=3.7e+02 Score=27.75 Aligned_cols=23 Identities=9% Similarity=-0.039 Sum_probs=8.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHh
Q 005259 358 QAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 358 el~~~K~rleele~E~~rl~e~l 380 (705)
.+...+..+..+.....++...+
T Consensus 39 ~l~~ar~~lA~~~a~~k~~e~~~ 61 (219)
T TIGR02977 39 TLVEVRTTSARTIADKKELERRV 61 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 333
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.16 E-value=2.5e+02 Score=32.80 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
+.+..|.+++..++.++..+...=+.+..|+++|+.+......+
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~ 102 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQ 102 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44445555555555555555555555555555554444443333
No 334
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=43.91 E-value=7.3e+02 Score=30.85 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=11.9
Q ss_pred ccccccccCccCcccccccccccc
Q 005259 125 EQSKDMSKHDADRVEIPETFTDLD 148 (705)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~ 148 (705)
.|...+.++......+....+.+|
T Consensus 253 ~l~~~i~~~~~~l~~~~~~l~~lD 276 (782)
T PRK00409 253 ELSAKVAKNLDFLKFLNKIFDELD 276 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444444444
No 335
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=43.24 E-value=1.4e+02 Score=31.80 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ 383 (705)
+|..+|..|++++.+++..++++.-++++++++--++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5566666666667777777777777766666655553
No 336
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=42.91 E-value=4.1e+02 Score=27.61 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005259 288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (705)
Q Consensus 288 lks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rle 367 (705)
+.+-++.||.+..-++.+-..+...+..++.-..+.=.++...+.....-.+..++--.-|+.++..|.+.+...+....
T Consensus 79 ~~~pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~ 158 (192)
T PF09727_consen 79 YENPLAELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQK 158 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888877777777777777777766666655555555555545555666666777777777777777777777
Q ss_pred HHHHHHHHHHHHhhh
Q 005259 368 SLQMNMESIMRNREL 382 (705)
Q Consensus 368 ele~E~~rl~e~l~~ 382 (705)
.++.+..++...+.+
T Consensus 159 ~~EkE~~K~~~~l~e 173 (192)
T PF09727_consen 159 KLEKEHKKLVSQLEE 173 (192)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776665554444
No 337
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=42.71 E-value=5.9e+02 Score=31.56 Aligned_cols=6 Identities=33% Similarity=0.457 Sum_probs=2.9
Q ss_pred hhhcch
Q 005259 652 FLWRYP 657 (705)
Q Consensus 652 fLRRyP 657 (705)
||+++|
T Consensus 743 ~L~~~~ 748 (771)
T TIGR01069 743 LLKNHP 748 (771)
T ss_pred HhcCCc
Confidence 444444
No 338
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=42.57 E-value=2.8e+02 Score=25.61 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~ 373 (705)
.++.++.++.++..++.....+...+.+++..+
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444433
No 339
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=42.46 E-value=4.1e+02 Score=27.59 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 253 LDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (705)
Q Consensus 253 Lee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es 332 (705)
+.++|+.|+...- ....++--|+.|-+-+.++++.|+.|.+....-.. |+++=.-+-.--.
T Consensus 43 m~evNrrlQ~hl~------------------EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrk-larEWQrFGryta 103 (195)
T PF10226_consen 43 MKEVNRRLQQHLN------------------EIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRK-LAREWQRFGRYTA 103 (195)
T ss_pred HHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHH-HhHHHHHhhhHHH
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (705)
Q Consensus 333 ~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e 378 (705)
...-. ++..-.++++.+..+.+++..|+.-|++
T Consensus 104 ~vmr~-------------eV~~Y~~KL~eLE~kq~~L~rEN~eLKE 136 (195)
T PF10226_consen 104 SVMRQ-------------EVAQYQQKLKELEDKQEELIRENLELKE 136 (195)
T ss_pred HHHHH-------------HHHHHHHHHHHHHHHHHHHHHhHHHHHH
No 340
>PRK00846 hypothetical protein; Provisional
Probab=41.86 E-value=2.3e+02 Score=25.29 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 005259 288 YKSENAQLEE 297 (705)
Q Consensus 288 lks~~aqLEe 297 (705)
+..|+..||.
T Consensus 11 le~Ri~~LE~ 20 (77)
T PRK00846 11 LEARLVELET 20 (77)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 341
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=41.86 E-value=1.8e+02 Score=34.85 Aligned_cols=40 Identities=30% Similarity=0.345 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (705)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~ 583 (705)
.++-+.+.+|+..+.+||..+..|..+...-+++++.+..
T Consensus 110 ~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 110 EEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5566788899999999999999999999888888877553
No 342
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=41.83 E-value=4.5e+02 Score=27.79 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=31.1
Q ss_pred HHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005259 257 QGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEAR 312 (705)
Q Consensus 257 n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~r 312 (705)
...|-.+++.|..|...-..-..++.........+...|+..+..+......+...
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~ 109 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQ 109 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556665555555555556666666666666666655555544444444443
No 343
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=41.68 E-value=2.7e+02 Score=25.20 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
...+++.|......|.+++.....+..+++.-+.-+..++
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL 76 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRL 76 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555544444444333
No 344
>PRK10698 phage shock protein PspA; Provisional
Probab=41.58 E-value=4.3e+02 Score=27.58 Aligned_cols=47 Identities=11% Similarity=0.124 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005259 432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (705)
Q Consensus 432 eALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r 478 (705)
+.+..++..++.....+..|..++..|+..+..++.+...+..++..
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555444444444333
No 345
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=41.05 E-value=4.5e+02 Score=29.54 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005259 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQ 358 (705)
Q Consensus 280 RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~e 358 (705)
+|......+.+.+..|+.....+......+......+|.+|-. +|.--|..|+.-|.+|+..|..+...
T Consensus 141 ~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~----------KF~~vLNeKK~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 141 RLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYA----------KFVLVLNEKKAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHHhhcc
Confidence 3333333344444444443333333333344444455555433 57777777777777777666665543
No 346
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=40.41 E-value=8.6e+02 Score=30.69 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=20.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (705)
Q Consensus 338 lsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (705)
...|.-+|.+|+.-+..-+=..+.++..-+=.++.++.|.-+
T Consensus 924 ~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE 965 (1424)
T KOG4572|consen 924 IEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAE 965 (1424)
T ss_pred HhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHH
Confidence 344555555555555554444555444444444444444433
No 347
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=40.24 E-value=1.6e+02 Score=31.94 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=52.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA 337 (705)
Q Consensus 275 a~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ea 337 (705)
+...-||+-+....+.+.+.||. +.++.++.+.+..+...|..++...++.+.+....+.++
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdr-isrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~h 267 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDR-ISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEH 267 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH-HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455788999999999999998 578888888888899999999999998888888877655
No 348
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=40.23 E-value=2.3e+02 Score=29.87 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005259 309 YEARIKQLEQELSVYKS 325 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~ 325 (705)
.-.|++.+=.+|..+++
T Consensus 112 vI~R~~~ll~~l~~l~~ 128 (216)
T KOG1962|consen 112 VIRRLHTLLRELATLRA 128 (216)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33455555555555555
No 349
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=40.00 E-value=58 Score=36.16 Aligned_cols=12 Identities=33% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 005259 283 SRLQEYKSENAQ 294 (705)
Q Consensus 283 k~~~elks~~aq 294 (705)
+++..+++.+..
T Consensus 35 eRLsaLEssv~s 46 (326)
T PF04582_consen 35 ERLSALESSVAS 46 (326)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 350
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=39.98 E-value=4.3e+02 Score=27.12 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhH
Q 005259 342 NSEIETLVSSIDALKKQAALSEGN 365 (705)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~r 365 (705)
..+|.-|+.....+++++...+.+
T Consensus 158 ~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 158 DKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544454444444443
No 351
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=39.82 E-value=1.2e+02 Score=28.36 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (705)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~ 589 (705)
..++.++..|.+++.+-..++..|..|.+.|+...+.+..++....
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6678888999999999999999999999999999998888777654
No 352
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=39.70 E-value=4.7e+02 Score=27.39 Aligned_cols=120 Identities=13% Similarity=0.200 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHH-HHHHHHHHHHHHhh--hHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 005259 459 EVECATLQQELQDMEARLKRGQKKSPEEANQAIQ-MQAWQDEVERARQG--QRDAENKLSSLEAEVQKMRVEMAAMKRDA 535 (705)
Q Consensus 459 E~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~q-L~~Lk~EL~~~rq~--qr~l~~kl~s~E~elqkLr~e~~~~k~q~ 535 (705)
+..|+.++.+.+..+.....+......--+-... ...|+.||...-.. .+....+|........+|-+.+......|
T Consensus 63 e~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~km 142 (201)
T PF11172_consen 63 EDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNASLRRASEQKLAETRRRYAQLIKAMRRAESKM 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666677777766666655555322221111111 33488888764322 23345677777788888888877766666
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 536 EHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584 (705)
Q Consensus 536 ~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~ 584 (705)
.+. ...++.++--|+-.|-. +.|.+|..|..++......+...
T Consensus 143 ~PV----L~~~~D~vL~LKHNLNA--~AI~sL~~e~~~~~~di~~Li~~ 185 (201)
T PF11172_consen 143 QPV----LAAFRDQVLYLKHNLNA--QAIASLQGEFSSIESDISQLIKE 185 (201)
T ss_pred ChH----HHHHHHHHHHHhccccH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 23334444334333322 34444444444444444444433
No 353
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.53 E-value=3.6e+02 Score=31.60 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
+.+..|-.+++.++.++..+..+++.++.+-+.+.++
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888999999999999999999888776655444
No 354
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=39.43 E-value=33 Score=35.41 Aligned_cols=29 Identities=14% Similarity=0.462 Sum_probs=27.4
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 005259 652 FLWRYPIARIILLFYLVFVHLFLMYLLHR 680 (705)
Q Consensus 652 fLRRyP~ARl~vlvYmvlLHLWVm~VL~~ 680 (705)
|++.|..+=+++++.++.+|.|-|++++-
T Consensus 164 f~kqnr~~l~~~~l~~l~~~~w~l~v~~k 192 (196)
T PF06770_consen 164 FFKQNRFTLIMFVLLILVLNCWNLYVLYK 192 (196)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999984
No 355
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=39.38 E-value=94 Score=34.89 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (705)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (705)
+.+++.++..++..+..+...+...+..+..+.+++.+
T Consensus 146 i~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~D 183 (370)
T PF02994_consen 146 IDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDD 183 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333333333333333
No 356
>PRK11519 tyrosine kinase; Provisional
Probab=39.37 E-value=7.9e+02 Score=29.98 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=15.7
Q ss_pred hhhhhhhhccccccccc-ccccc
Q 005259 91 TLAVEKETITTGKTQKN-GEQQQ 112 (705)
Q Consensus 91 ~~~~~~~~~~~~~~~~~-~~~~~ 112 (705)
.+.+|.|.|.|..+... .+++-
T Consensus 86 ~~~tEieILkSr~v~~~VV~~L~ 108 (719)
T PRK11519 86 ASDAEIQLIRSRLVLGKTVDDLD 108 (719)
T ss_pred chHHHHHHHHHHHHHHHHHHHhC
Confidence 57788899999888864 44443
No 357
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=38.96 E-value=2.6e+02 Score=24.35 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=14.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHhh
Q 005259 511 ENKLSSLEAEVQKMRVEMAAMK 532 (705)
Q Consensus 511 ~~kl~s~E~elqkLr~e~~~~k 532 (705)
..+|.+.+..|..|+.+.+.+.
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLS 25 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLS 25 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 3456667777777777775544
No 358
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=38.94 E-value=51 Score=30.58 Aligned_cols=79 Identities=24% Similarity=0.246 Sum_probs=46.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 301 el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
+.+..+..++..+..++.+|..+-..++..-..|... -.-+...++.++..|+.++......++.++.++..|+.-+
T Consensus 5 ~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~---ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 5 EERERREEAEQEKEQIESELEELTASLFEEANKMVAD---ARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666777777777766666666555522 2333455556666666666666666666666655555544
Q ss_pred hh
Q 005259 381 EL 382 (705)
Q Consensus 381 ~~ 382 (705)
..
T Consensus 82 ~~ 83 (100)
T PF06428_consen 82 ES 83 (100)
T ss_dssp TT
T ss_pred HH
Confidence 44
No 359
>PRK09343 prefoldin subunit beta; Provisional
Probab=38.52 E-value=3.5e+02 Score=25.61 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQMNMESI 376 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl 376 (705)
-+..++..++.....++.++.+++..++.+
T Consensus 82 ~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 82 LLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333
No 360
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=38.28 E-value=5e+02 Score=28.31 Aligned_cols=8 Identities=0% Similarity=0.073 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 005259 395 LASVERRA 402 (705)
Q Consensus 395 Lkslq~~l 402 (705)
+.=|+.++
T Consensus 168 V~WLR~~L 175 (269)
T PF05278_consen 168 VDWLRSKL 175 (269)
T ss_pred hHHHHHHH
Confidence 34444444
No 361
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.26 E-value=7.2e+02 Score=29.17 Aligned_cols=26 Identities=19% Similarity=0.058 Sum_probs=11.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005259 277 VCAGLSSRLQEYKSENAQLEELLVAE 302 (705)
Q Consensus 277 ~~~RLrk~~~elks~~aqLEell~el 302 (705)
++.||-+.+..-..-.++|+..+...
T Consensus 280 lkerl~e~l~dgeayLaKL~~~l~~~ 305 (521)
T KOG1937|consen 280 LKERLIEALDDGEAYLAKLMGKLAEL 305 (521)
T ss_pred hHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 33333333334444445555544433
No 362
>smart00338 BRLZ basic region leucin zipper.
Probab=38.14 E-value=1.3e+02 Score=25.00 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
+...+.+|+.++..|..+...+...++.+..++..+...+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677778888888888888888888888888887776544
No 363
>PRK00846 hypothetical protein; Provisional
Probab=37.96 E-value=2.7e+02 Score=24.81 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005259 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (705)
Q Consensus 280 RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l 327 (705)
.+..++.++..+++-.|+.+..+.+.....+..+..|+..+....+-+
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655555555555555555554444333
No 364
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=37.62 E-value=5.8e+02 Score=27.86 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhh-hhhcchHHHHHHHHHhhhhHHHHHHH
Q 005259 251 DQLDEAQGLLKTT-ISTGQSKEARLARVCAGLSSRLQEYK 289 (705)
Q Consensus 251 kQLee~n~~LrsE-~eal~~ke~qLa~~~~RLrk~~~elk 289 (705)
+++++.+.+|.-. .+++..-++||.-+..|++--..++.
T Consensus 30 k~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~ 69 (268)
T PF11802_consen 30 KDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELE 69 (268)
T ss_pred HHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence 4666677777444 46666667777776666665444443
No 365
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.28 E-value=2.6e+02 Score=31.99 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 307 ~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
-.|..+...+..++...|.++......+......+++..+.|..+...+..+++.++..+..++++...+.-.+
T Consensus 33 ~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 33 IALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444566666677777766777766665422222211455655666666666666666666666655555444
No 366
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.18 E-value=25 Score=31.77 Aligned_cols=17 Identities=6% Similarity=0.118 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005259 661 IILLFYLVFVHLFLMYL 677 (705)
Q Consensus 661 l~vlvYmvlLHLWVm~V 677 (705)
+.||+.++.||+|-=|.
T Consensus 68 vgFIasV~~LHi~gK~~ 84 (88)
T KOG3457|consen 68 VGFIASVFALHIWGKLT 84 (88)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67888999999996554
No 367
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=37.17 E-value=2.7e+02 Score=28.91 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHH
Q 005259 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMR 525 (705)
Q Consensus 493 L~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr 525 (705)
|++++..|..++++..-|+.=|...+.+|+.|+
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555555555555555556666666654
No 368
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.09 E-value=9.1e+02 Score=30.02 Aligned_cols=6 Identities=50% Similarity=0.866 Sum_probs=2.6
Q ss_pred hhhcch
Q 005259 652 FLWRYP 657 (705)
Q Consensus 652 fLRRyP 657 (705)
||++||
T Consensus 754 ~L~~~~ 759 (782)
T PRK00409 754 FLKKHP 759 (782)
T ss_pred HHcCCC
Confidence 444444
No 369
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=37.06 E-value=2.4e+02 Score=28.91 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHH
Q 005259 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL--TETRMIQALREELASVERR 401 (705)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~--~ekeilqSLE~eLkslq~~ 401 (705)
++.+.|-+.+..++.++..++...+-++.|++.|.-.++. ..++ +++|.++-+....+
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~-i~~L~kev~~~~er 138 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEE-IQELKKEVAGYRER 138 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH-HHHHHHHHHHHHHH
Confidence 3444556666666666666666666777776666666665 3444 55555444444333
No 370
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.01 E-value=1.7e+02 Score=29.35 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (705)
Q Consensus 549 rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (705)
....+.+++.....+++..+.|..+|..|.+-+...|
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344555555555555556666667777776665544
No 371
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=36.88 E-value=1.4e+02 Score=35.50 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH
Q 005259 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (705)
Q Consensus 340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ 383 (705)
+...++-+|+.+++.|+.++.+...++++++....+.+.++..+
T Consensus 90 sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~L 133 (907)
T KOG2264|consen 90 SVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSAL 133 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455667888888888888888888888877776655554443
No 372
>PRK04406 hypothetical protein; Provisional
Probab=36.84 E-value=2.9e+02 Score=24.31 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 287 EYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV 330 (705)
Q Consensus 287 elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~ 330 (705)
.+..|+..||..+.-+.+....|..-+...+.++...+..+..+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555555555554444444333
No 373
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=36.77 E-value=73 Score=26.90 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=34.6
Q ss_pred hhhHHHHHHHhHhhhhhhhhh-HhhhcchhHHHHHHHHHHHHHHHHH
Q 005259 630 GASVQLQKAAKLLDSGAVRAT-RFLWRYPIARIILLFYLVFVHLFLM 675 (705)
Q Consensus 630 ~~~~~vk~Aa~~lDs~slr~g-~fLRRyP~ARl~vlvYmvlLHLWVm 675 (705)
++.++.|-.+-..=.+++-+. .|+..+|.+|+++++.+++...|++
T Consensus 23 ~i~~k~K~~a~~~m~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~i~ 69 (71)
T PF04304_consen 23 GIPRKAKIRALLMMWLSMGISAFFFVPNLWVRIVLAAILLIVAIYIL 69 (71)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhe
Confidence 455667766666666666667 6777777999999999998877775
No 374
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=36.52 E-value=2.4e+02 Score=25.52 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAE 575 (705)
Q Consensus 543 ~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~ 575 (705)
...+..++..+.+++.....++..+..+...+.
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777777777777666554
No 375
>PF07099 DUF1361: Protein of unknown function (DUF1361); InterPro: IPR009793 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.
Probab=36.45 E-value=63 Score=32.30 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=37.5
Q ss_pred HHHHHHHhHhhhhhhhhhHhhh-------cchhHHHHHHHHHHHHHHHHHHHHHhh
Q 005259 633 VQLQKAAKLLDSGAVRATRFLW-------RYPIARIILLFYLVFVHLFLMYLLHRL 681 (705)
Q Consensus 633 ~~vk~Aa~~lDs~slr~g~fLR-------RyP~ARl~vlvYmvlLHLWVm~VL~~~ 681 (705)
.-+--++..+-++++.+|||+| .+|..=+--++..+--|.|.|+++++.
T Consensus 107 ~~~~~~~~~Lss~GIYlGRflR~NSWDi~~~P~~l~~~i~~~l~~~~~~fv~~~~~ 162 (168)
T PF07099_consen 107 WLFIILISFLSSFGIYLGRFLRLNSWDILTNPQSLIRDILSSLSPHAWLFVLLFTF 162 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHhCCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3456677888999999999999 457766666666667778888877754
No 376
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.14 E-value=5e+02 Score=31.15 Aligned_cols=125 Identities=12% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005259 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349 (705)
Q Consensus 270 ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le 349 (705)
|+.||+++ +-+++.-..++.+...|++-..+-.++-..|.+++..|-+---.+.-.+...+.+|...+--...+...|.
T Consensus 597 k~~QlQ~l-~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~ 675 (741)
T KOG4460|consen 597 KKKQLQDL-SYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLG 675 (741)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005259 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREEL 395 (705)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eL 395 (705)
..+..+.......+....+.++....=...+.+.+-+-+++.=.+|
T Consensus 676 ~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L 721 (741)
T KOG4460|consen 676 NAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKEL 721 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHH
No 377
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=36.01 E-value=12 Score=43.53 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005259 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (705)
Q Consensus 333 ~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~r 375 (705)
++..+..-|+.+|..+..||...++|+.+...+...+-+.+++
T Consensus 423 RLr~QQ~eKd~qmksII~RL~~vEeELrre~~~m~~~~~~kqr 465 (495)
T PF12004_consen 423 RLRRQQEEKDSQMKSIISRLMAVEEELRREHAEMQAVLDHKQR 465 (495)
T ss_dssp -------------------------------------------
T ss_pred HHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHHHHhcccccchH
Confidence 3444444466677777777777777777766655555544443
No 378
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=35.77 E-value=5.2e+02 Score=26.85 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 005259 285 LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEG 364 (705)
Q Consensus 285 ~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~ 364 (705)
-..|..+++.+|.++....+ +...|+++|..-+..... +..+......+...|..+...++.+|..+..
T Consensus 107 R~~LeAQka~~eR~ia~~~~-------ra~~LqaDl~~~~~Q~~~----va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~ 175 (192)
T PF11180_consen 107 RAQLEAQKAQLERLIAESEA-------RANRLQADLQIARQQQQQ----VAARQQQARQEAQALEAERRAAQAQLRQLQR 175 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666665544443 555566666554432222 2223333444444555555555444444444
Q ss_pred HHHHHH
Q 005259 365 NLASLQ 370 (705)
Q Consensus 365 rleele 370 (705)
.+..|+
T Consensus 176 qv~~Lq 181 (192)
T PF11180_consen 176 QVRQLQ 181 (192)
T ss_pred HHHHHH
Confidence 444443
No 379
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=35.58 E-value=1.6e+02 Score=27.88 Aligned_cols=45 Identities=27% Similarity=0.281 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (705)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e 588 (705)
..++.++..|..++.+-..++..|..|.++|+..-+.+..+++..
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888999999999999999999999999999988888877764
No 380
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.50 E-value=1.2e+02 Score=34.30 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=53.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 512 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 590 (705)
Q Consensus 512 ~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~ 590 (705)
.+.+.+-.+..+||.+...++.- -++.......|+++|.+|.+-|..++.|..+|.|+-..+..+..+-+-
T Consensus 15 ~kyqklaqeysklraqakvlke~--------viee~gk~~kl~eelk~k~a~irrieaendsl~frndql~rrvenfqf 85 (637)
T KOG4421|consen 15 AKYQKLAQEYSKLRAQAKVLKEA--------VIEEQGKEAKLREELKQKAASIRRIEAENDSLGFRNDQLERRVENFQF 85 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHhcchhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHhcc
Confidence 34455666777777777555432 245556778999999999999999999999999998888877666543
No 381
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=35.15 E-value=6.9e+02 Score=28.06 Aligned_cols=11 Identities=27% Similarity=0.220 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 005259 417 MEREVELEHRA 427 (705)
Q Consensus 417 ~~Re~eLEee~ 427 (705)
..|+..||...
T Consensus 215 E~RL~~LE~~l 225 (388)
T PF04912_consen 215 EKRLARLESAL 225 (388)
T ss_pred HHHHHHHHHHh
Confidence 33444444433
No 382
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=35.12 E-value=4e+02 Score=25.81 Aligned_cols=46 Identities=15% Similarity=0.092 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005259 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397 (705)
Q Consensus 351 rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLks 397 (705)
.+...+-|=.+++.+|..+|.|.+.+..-..++-++ +..||+.|+.
T Consensus 19 dR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rr-IkMLE~aLkq 64 (134)
T PF08232_consen 19 DRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRR-IKMLEYALKQ 64 (134)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 333444444455555555666655544444444444 4444444433
No 383
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=34.68 E-value=6.3e+02 Score=27.48 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 307 RSYEARIKQLEQELSVYKSEVTKV 330 (705)
Q Consensus 307 ~~L~~rl~~LQaeL~~EQ~~l~q~ 330 (705)
..++..+.++++++...+..+...
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~~~ 105 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIMTT 105 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555544444333
No 384
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=34.58 E-value=5.9e+02 Score=27.07 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=58.8
Q ss_pred cCCCCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 242 ADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELS 321 (705)
Q Consensus 242 ~~ek~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~ 321 (705)
.+.||=.. .-|+++-....+....+...+ .+....|+..++.+.......+.++..++.....+...+..|+..+.
T Consensus 38 ~~GkiLeg-~~Ld~aL~~~~~~~~~~~~~~---e~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~ 113 (256)
T PF14932_consen 38 KSGKILEG-EALDEALKTISAFSPKLLELE---EEDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEE 113 (256)
T ss_pred HcCCcCCH-HHHHHHHHHcccccCCccccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44444222 356666666666643221111 12233444455555444444555555555555555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005259 322 VYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA 359 (705)
Q Consensus 322 ~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el 359 (705)
..+..+......+...+.+.+.++..+.+.+..+-.++
T Consensus 114 ~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~~ 151 (256)
T PF14932_consen 114 EAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLASEL 151 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555555555555555556666555555554444
No 385
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=34.36 E-value=8.8e+02 Score=29.04 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=9.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH
Q 005259 276 RVCAGLSSRLQEYKSENAQLEEL 298 (705)
Q Consensus 276 ~~~~RLrk~~~elks~~aqLEel 298 (705)
.+..-|.+.+........|.+.+
T Consensus 164 e~~~~lEk~Le~i~~~l~qf~~l 186 (570)
T COG4477 164 EAAPELEKKLENIEEELSQFVEL 186 (570)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444443
No 386
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=34.34 E-value=87 Score=32.99 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005259 562 TQLETMASEKAAAEFQLEKEM 582 (705)
Q Consensus 562 ~qlE~L~~Er~sL~~qLE~~~ 582 (705)
..-|.|..|...|..+|-.--
T Consensus 163 ~~QE~L~~em~~La~~LK~~s 183 (251)
T PF09753_consen 163 NLQEDLTEEMLSLARQLKENS 183 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444578888888888886633
No 387
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.30 E-value=4.2e+02 Score=26.61 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005259 311 ARIKQLEQELSVYKSEVTKVE 331 (705)
Q Consensus 311 ~rl~~LQaeL~~EQ~~l~q~e 331 (705)
.++..+-.++...++.....+
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~ 138 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALK 138 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555544444443
No 388
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=34.16 E-value=1.4e+02 Score=28.29 Aligned_cols=44 Identities=27% Similarity=0.237 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (705)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~ 587 (705)
..++.+|..|-.++-..-+++.++..|.++|++..+.+..|+..
T Consensus 11 ~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 11 DNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 56778889999999998999999999999999999998877665
No 389
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=34.15 E-value=4.8e+02 Score=25.88 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=42.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005259 336 EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401 (705)
Q Consensus 336 ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~ 401 (705)
+.+..++.++..|......--.-+...+.++..+..+...+...+...... +..++.+|..++..
T Consensus 56 ~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~-~~~~r~~l~~~k~~ 120 (177)
T PF13870_consen 56 EKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEE-LAKLREELYRVKKE 120 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 334445666667776666666777777777777777777777777776666 55555555555443
No 390
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.11 E-value=4.1e+02 Score=29.28 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005259 294 QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (705)
Q Consensus 294 qLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~ 373 (705)
+||..-..+.+....+...+..|+.++.+.+..+...++++. ..|..+..-+-.+...+++++.+.
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els--------------~~L~~l~~~~~~~s~~~~k~esei 184 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELS--------------RALASLKNTLVQLSRNIEKLESEI 184 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344443444444444555555555555554444444444232 333333333334455555555555
Q ss_pred HHHHH
Q 005259 374 ESIMR 378 (705)
Q Consensus 374 ~rl~e 378 (705)
..++.
T Consensus 185 ~~Ik~ 189 (300)
T KOG2629|consen 185 NTIKQ 189 (300)
T ss_pred HHHHH
Confidence 55443
No 391
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=34.09 E-value=7.2e+02 Score=27.95 Aligned_cols=59 Identities=14% Similarity=-0.017 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005259 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA 311 (705)
Q Consensus 252 QLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~ 311 (705)
++.+....+..+---++-|+.+....+..++ .+-...-....||+++|+++-..+.+..
T Consensus 36 d~~e~~~~v~~~~kvlq~k~~t~~kek~~~Q-~l~kt~larsKLeelCRelQr~nk~~ke 94 (391)
T KOG1850|consen 36 DNAELKIKVLDYDKVLQVKDLTEKKEKRNNQ-ILLKTELARSKLEELCRELQRANKQTKE 94 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444445555555555554 2223333446788888877776665554
No 392
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=33.20 E-value=7.8e+02 Score=28.08 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=15.3
Q ss_pred CCcchhhhhhhhccccccccc
Q 005259 87 KDTATLAVEKETITTGKTQKN 107 (705)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~ 107 (705)
.+...+..|.+.|.|..+.+-
T Consensus 77 ~~~~~~~~q~~il~S~~vl~~ 97 (458)
T COG3206 77 NDSSSLETEIEILQSRSVLEK 97 (458)
T ss_pred CCchhHHHHHHHHhhHHHHHH
Confidence 455667778888888888753
No 393
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=33.10 E-value=14 Score=42.93 Aligned_cols=81 Identities=25% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005259 271 EARLARVCAGLSSRLQEYKSENAQLEELLVAERE----LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE 346 (705)
Q Consensus 271 e~qLa~~~~RLrk~~~elks~~aqLEell~el~e----~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie 346 (705)
|.+|..-.....|-+.+++.+...=|+-|+.+++ ..+.+..|++..|.||.+++. ++...+..|.-.|+
T Consensus 396 ErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre~~-------~m~~~~~~kqrii~ 468 (495)
T PF12004_consen 396 ERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRREHA-------EMQAVLDHKQRIID 468 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHH-------HHhcccccchHHHH
Confidence 4455555555666777777777777766666555 256667799999999988775 34444555665665
Q ss_pred HHHHHHHHHHHH
Q 005259 347 TLVSSIDALKKQ 358 (705)
Q Consensus 347 ~Le~rl~~Le~e 358 (705)
.=+.+|.+|+.-
T Consensus 469 aQ~~~i~~Ldaa 480 (495)
T PF12004_consen 469 AQEKRIAALDAA 480 (495)
T ss_dssp ------------
T ss_pred Hhhhhccccccc
Confidence 555555555443
No 394
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=33.04 E-value=3.6e+02 Score=25.00 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 551 RELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (705)
Q Consensus 551 ~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (705)
+.|.-.+.+-...+..+......+.++++.+.
T Consensus 68 ~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 68 HDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555566666666655
No 395
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=33.02 E-value=2.7e+02 Score=23.54 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005259 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSE-IETLVSSIDALKKQAALSEGNLASLQ 370 (705)
Q Consensus 312 rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~e-ie~Le~rl~~Le~el~~~K~rleele 370 (705)
++..|+..+..|..-+.=.+. +...+++.+.. ....+..+..+...+..++..|++++
T Consensus 2 ~i~~L~~~i~~E~ki~~Gae~-m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~ 60 (70)
T PF02185_consen 2 RIEELQKKIDKELKIKEGAEN-MLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQ 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677666654444443 44343333333 45555555555555555555555444
No 396
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.86 E-value=3.5e+02 Score=30.52 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005259 323 YKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (705)
Q Consensus 323 EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~r 375 (705)
+|+++++.++++.+-...+..+++.|+.++..++..+.-++.+.+++++..+.
T Consensus 233 eq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 233 EQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 34455555555666666666777788888888888888888887776666554
No 397
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.69 E-value=3.9e+02 Score=24.37 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
...-+..|..++..++.++..+...+..++.++..++.++
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555555444443
No 398
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.53 E-value=4.1e+02 Score=31.32 Aligned_cols=104 Identities=14% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHH----HHHHHHHHHhhhHHHHhhhhhHHHHHHHH
Q 005259 449 GELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQA----WQDEVERARQGQRDAENKLSSLEAEVQKM 524 (705)
Q Consensus 449 ~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~----Lk~EL~~~rq~qr~l~~kl~s~E~elqkL 524 (705)
.+|.+++.+-+.+.++-+-.|..+..+..++++....-...+++++. |...+-++--.++-++.+=-.+..+=++|
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~L 416 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEEL 416 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHH
Q ss_pred HHHHHHhhhhhcccchhhhHHHHHHHHHHHHHH
Q 005259 525 RVEMAAMKRDAEHYSREEHMELEKRYRELTDLL 557 (705)
Q Consensus 525 r~e~~~~k~q~~els~q~~~elE~rl~eLtE~L 557 (705)
|+++..+-+++..+ .+++.||..|.+.+
T Consensus 417 r~Kldtll~~ln~P-----nq~k~Rl~~L~e~~ 444 (508)
T KOG3091|consen 417 RAKLDTLLAQLNAP-----NQLKARLDELYEIL 444 (508)
T ss_pred HHHHHHHHHHhcCh-----HHHHHHHHHHHHHH
No 399
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=32.35 E-value=1.1e+03 Score=29.61 Aligned_cols=126 Identities=15% Similarity=0.066 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005259 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (705)
Q Consensus 248 ~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l 327 (705)
.+++-.+-+..-+--=+..+++|+.|.....-||++.+..+..+-..-|. +.+++...-+.+...+|.+..+-.++-
T Consensus 893 ~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER~rrEa---eek~rre~ee~k~~k~e~e~kRK~eEe 969 (1259)
T KOG0163|consen 893 EMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAERKRREA---EEKRRREEEEKKRAKAEMETKRKAEEE 969 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh-HHHHHHHH
Q 005259 328 TKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL-TETRMIQA 390 (705)
Q Consensus 328 ~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~-~ekeilqS 390 (705)
.+... .=.++.-.++-+.+..+...+++...+.-=++++.+ ++-++-++
T Consensus 970 qr~~q--------------ee~e~~l~~e~q~qla~e~eee~k~q~~~Eqer~D~~la~RlA~s 1019 (1259)
T KOG0163|consen 970 QRKAQ--------------EEEERRLALELQEQLAKEAEEEAKRQNQLEQERRDHELALRLANS 1019 (1259)
T ss_pred HHHhh--------------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
No 400
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=32.30 E-value=7.2e+02 Score=27.92 Aligned_cols=57 Identities=11% Similarity=0.055 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005259 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (705)
Q Consensus 348 Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~ 404 (705)
|......|..+...+..+++++...+..+-..+-.+--..|+++...|+.++..+..
T Consensus 149 L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~ 205 (342)
T PF06632_consen 149 LQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLAS 205 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333444455566666677777777777766666666666677777777777766643
No 401
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=32.19 E-value=7e+02 Score=27.24 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=41.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (705)
Q Consensus 510 l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (705)
...+|..++.++..-++.-+.++.+. .+|-.-+.+|++.+.-.|..|=-|..+...-+-+++++.
T Consensus 234 s~Gria~Le~eLAmQKs~seElkssq--------~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~ 298 (330)
T KOG2991|consen 234 SEGRIAELEIELAMQKSQSEELKSSQ--------EELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLK 298 (330)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHhH--------HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 46788888888877666655544332 344456667777776666666666666666665555543
No 402
>PF08409 DUF1736: Domain of unknown function (DUF1736); InterPro: IPR013618 This domain of unknown function is found in various hypothetical metazoan proteins.
Probab=32.06 E-value=48 Score=29.59 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHh
Q 005259 656 YPIARIILLFYLVFVHLFLMYLLHR 680 (705)
Q Consensus 656 yP~ARl~vlvYmvlLHLWVm~VL~~ 680 (705)
+...|++.+.|+..+|+|.++.=.+
T Consensus 21 ~~~tR~LT~~yl~~~n~~LLl~P~~ 45 (80)
T PF08409_consen 21 SLLTRWLTYNYLPAFNLWLLLFPSW 45 (80)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCccc
Confidence 4568999999999999998875433
No 403
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=31.92 E-value=1.5e+02 Score=27.52 Aligned_cols=42 Identities=26% Similarity=0.311 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005259 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (705)
Q Consensus 435 aelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~ 476 (705)
+++++.|+=...++.-+++.+..++.+-+++..+|..+...+
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555666667777777766667777766666544
No 404
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=31.89 E-value=87 Score=29.08 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005259 320 LSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASV 398 (705)
Q Consensus 320 L~~EQ~~l~q~es~~~ealsak~~eie~Le~rl-~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLksl 398 (705)
|..++..+...+. .....+.++++|-..| ..++..+...+..-..++..+..+...+.+.... +.+++..|+.|
T Consensus 3 l~~e~~~r~~ae~----~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~-l~~lq~qL~~L 77 (100)
T PF06428_consen 3 LEEERERREEAEQ----EKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEAL-LESLQAQLKEL 77 (100)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHC-CCHCTSSSSHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4445554555554 3334778888998888 8888888888887778888888888877776655 66666555555
Q ss_pred HHH
Q 005259 399 ERR 401 (705)
Q Consensus 399 q~~ 401 (705)
+.-
T Consensus 78 K~v 80 (100)
T PF06428_consen 78 KTV 80 (100)
T ss_dssp HHC
T ss_pred HHH
Confidence 443
No 405
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=31.64 E-value=7e+02 Score=27.15 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH
Q 005259 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (705)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ 383 (705)
..++..+...+..+...++..+.++.+++.+++-.....
T Consensus 204 ~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 204 HEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 334555555556666666666666666666666555543
No 406
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=31.55 E-value=2.9e+02 Score=23.23 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=27.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHHHHHHHHHH
Q 005259 356 KKQAALSEGNLASLQMNMESIMRNREL-------------TETRMIQALREELASVERRA 402 (705)
Q Consensus 356 e~el~~~K~rleele~E~~rl~e~l~~-------------~ekeilqSLE~eLkslq~~l 402 (705)
+.++.++...+++++.++.++...++. .++..+..++.++..++..+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l 62 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666665 24444555555555555444
No 407
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=31.50 E-value=5.8e+02 Score=26.05 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259 285 LQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (705)
Q Consensus 285 ~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL 320 (705)
++.+.-.....-+++..++.+.-.+..++..|+..+
T Consensus 4 l~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 4 LDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555566666666666666666666666
No 408
>PLN02678 seryl-tRNA synthetase
Probab=30.96 E-value=3.5e+02 Score=31.41 Aligned_cols=71 Identities=15% Similarity=0.289 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
|..+...++.++...+..+.+....+... .......+.|..+...+.+++..+...+.+++.++..++-.+
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~-k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKL-KIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455566666666666666666655431 122334455555566666666666666666666665555444
No 409
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=30.93 E-value=1.2e+03 Score=29.54 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005259 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397 (705)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLks 397 (705)
..++.+....+..+++..-+++.+-.....++.+|++..+.+|--
T Consensus 998 kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e 1042 (1424)
T KOG4572|consen 998 KEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIE 1042 (1424)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 344444444445555555555555555555666666666655433
No 410
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=30.89 E-value=2.9e+02 Score=23.49 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005259 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (705)
Q Consensus 306 ~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~ 377 (705)
.+.++.++..|+.+|..|..-+.-.+. +.......... ..+..++.++.....+++.+..++.+++
T Consensus 4 ~~~~~~~l~~L~~~l~~E~~~r~Gaen-m~~~~~~~~~~-----~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 4 RSKLQSRLERLEKELSIELKVKEGAEN-LLRLYSDEKKK-----KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCc-----cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888776655555 33343333321 3445555555555566655555554443
No 411
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=30.54 E-value=4.2e+02 Score=24.08 Aligned_cols=7 Identities=43% Similarity=0.396 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 005259 313 IKQLEQE 319 (705)
Q Consensus 313 l~~LQae 319 (705)
+..|..+
T Consensus 33 ~~rl~~E 39 (96)
T PF08647_consen 33 KLRLEAE 39 (96)
T ss_pred HHHHHHH
Confidence 3333333
No 412
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=30.26 E-value=5.8e+02 Score=28.63 Aligned_cols=11 Identities=36% Similarity=0.727 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 005259 667 LVFVHLFLMYL 677 (705)
Q Consensus 667 mvlLHLWVm~V 677 (705)
++++|+|=+|+
T Consensus 269 Lf~~~~~q~yn 279 (330)
T PF07851_consen 269 LFFGQFFQLYN 279 (330)
T ss_pred HHHHHHHHHHH
Confidence 34455554443
No 413
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.96 E-value=3.7e+02 Score=30.81 Aligned_cols=72 Identities=19% Similarity=0.368 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 308 ~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
.|..+..+++.++...|..+......+.... ......+.|..+...+.++++.++..+..++++...+.-.+
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQAK-RKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444556666666666666666666555321 11123344555555566666666666666666555554443
No 414
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=29.89 E-value=8.6e+02 Score=27.53 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=33.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHh
Q 005259 304 ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN---MESIMRNR 380 (705)
Q Consensus 304 e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E---~~rl~e~l 380 (705)
+....+..++..++.++...-.............+......|.+|-.++..........+.-+.++-.+ ++.++.++
T Consensus 25 ~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNL 104 (383)
T PF04100_consen 25 ELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNL 104 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666665544433322222222333333344444444444444444444444333333 33344444
Q ss_pred hh
Q 005259 381 EL 382 (705)
Q Consensus 381 ~~ 382 (705)
+.
T Consensus 105 T~ 106 (383)
T PF04100_consen 105 TQ 106 (383)
T ss_pred HH
Confidence 44
No 415
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.65 E-value=4.3e+02 Score=24.03 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=11.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 005259 279 AGLSSRLQEYKSENAQLEELLVA 301 (705)
Q Consensus 279 ~RLrk~~~elks~~aqLEell~e 301 (705)
.+|+...+.+....+.|+..+++
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~E 31 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLNE 31 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554433
No 416
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=29.64 E-value=7.3e+02 Score=26.60 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005259 348 LVSSIDALKKQAALSEGNLASLQMNMES 375 (705)
Q Consensus 348 Le~rl~~Le~el~~~K~rleele~E~~r 375 (705)
+...+..++..+...+..+..++.+.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~a~~~~~R 122 (327)
T TIGR02971 95 LFKDVAAQQATLNRLEAELETAQREVDR 122 (327)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 417
>PLN02320 seryl-tRNA synthetase
Probab=29.47 E-value=3.4e+02 Score=32.05 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 312 rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
+...++.++...+..+......+.. .......+.|..+...+.+++..++..+..+++++..+.-.+
T Consensus 101 ~~r~~~~~~~~lr~ern~~sk~i~~--~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 101 NMLALQKEVERLRAERNAVANKMKG--KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444555555555555555554443 122233445555555555555555555555555555544443
No 418
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=29.24 E-value=3.9e+02 Score=23.32 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=12.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 359 AALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 359 l~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
++.++..+.+++.++..+...++..+..
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~ 62 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKE 62 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 419
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=29.18 E-value=1.5e+03 Score=30.07 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005259 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (705)
Q Consensus 431 seALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r 478 (705)
.+-+..++..+.....++.++..++..+..++..+......++.+..+
T Consensus 884 e~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~ 931 (1294)
T KOG0962|consen 884 EEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT 931 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH
Confidence 333444444444444555666666666666666666666665555433
No 420
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=29.12 E-value=6.6e+02 Score=26.19 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=18.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHH
Q 005259 277 VCAGLSSRLQEYKSENAQLEEL 298 (705)
Q Consensus 277 ~~~RLrk~~~elks~~aqLEel 298 (705)
..+||+..+++|...+...|..
T Consensus 97 EevrLkrELa~Le~~l~~~~~~ 118 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQA 118 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999888888888773
No 421
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=29.05 E-value=8.3e+02 Score=27.07 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=32.3
Q ss_pred HHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 274 LARVCAGLSSR-LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (705)
Q Consensus 274 La~~~~RLrk~-~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~ 322 (705)
|-+++.+|++. ..++...+.++++.+.+++.....++.++..|+..+..
T Consensus 57 ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 57 LDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred hHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555553 44566777777777777777777777777777777654
No 422
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=28.99 E-value=8.7e+02 Score=27.30 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=12.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 005259 455 VAMLEVECATLQQELQDMEARLK 477 (705)
Q Consensus 455 ls~LE~elkqLkQeLq~lE~e~~ 477 (705)
+..++..+.+++.++..++..+.
T Consensus 229 ~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 229 LETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555553
No 423
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=28.90 E-value=4.2e+02 Score=23.63 Aligned_cols=7 Identities=43% Similarity=0.686 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 005259 393 EELASVE 399 (705)
Q Consensus 393 ~eLkslq 399 (705)
.+|..|+
T Consensus 64 eEI~rLr 70 (79)
T PF08581_consen 64 EEIARLR 70 (79)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 424
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=28.90 E-value=5.3e+02 Score=24.83 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
++.-..+|..+...++-++..+....+.++...+.++..+
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555544444444443
No 425
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.54 E-value=2.2e+02 Score=33.33 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=19.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005259 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (705)
Q Consensus 356 e~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l 402 (705)
+..+.+++.+++.+..+++.+.....+.+.+ +..|+.+++.|+..+
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~K-IkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRR-IEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHHHHHHHHHHHH
Confidence 3334444444444444444333333333333 444454555554443
No 426
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.46 E-value=2.3e+02 Score=22.58 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005259 316 LEQELSVYKSEVTKVESNL 334 (705)
Q Consensus 316 LQaeL~~EQ~~l~q~es~~ 334 (705)
||.+....+..+..+.+++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~ 21 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEY 21 (45)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 427
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=28.32 E-value=7.2e+02 Score=26.15 Aligned_cols=122 Identities=20% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHH
Q 005259 430 ASMALARIQRIADERT---------AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEV 500 (705)
Q Consensus 430 LseALaelQrkLeEe~---------aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~Lk~EL 500 (705)
++..+..+|..+.... ..+..|...+..+|..++.+++++..++..+.... .+--.-+.|+
T Consensus 7 ~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai----------~~Rs~sQrEv 76 (207)
T PF05546_consen 7 LSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAI----------QQRSSSQREV 76 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q ss_pred HHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 501 ERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREE---HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577 (705)
Q Consensus 501 ~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~---~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~q 577 (705)
+.+.+.+.. -+... =+.|=+.-|.+.....+-+..++..+.....+..+
T Consensus 77 n~LLqRK~s----------------------------Ws~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~ 128 (207)
T PF05546_consen 77 NELLQRKHS----------------------------WSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDD 128 (207)
T ss_pred HHHHhcccC----------------------------CChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-HHHHHHH
Q 005259 578 LEKEM-NRLQEVQ 589 (705)
Q Consensus 578 LE~~~-~~~~~e~ 589 (705)
|-+.. +||.+|+
T Consensus 129 L~~~Il~RYHEEQ 141 (207)
T PF05546_consen 129 LMRAILTRYHEEQ 141 (207)
T ss_pred HHHHHHHHHHHHH
No 428
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=28.11 E-value=4e+02 Score=23.09 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 348 Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
|-.....|..+-..++.....++.|..++.++.
T Consensus 12 Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 12 LLEYLERLKSENRLLRAQEKTWREERAQLLEKN 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444433
No 429
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.00 E-value=3.3e+02 Score=27.54 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 285 LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (705)
Q Consensus 285 ~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es 332 (705)
.+.+..++..|+..+..++.+...|+.++..|+..+...++.|..+-.
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666665554
No 430
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.81 E-value=3.4e+02 Score=22.87 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005259 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (705)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~ 381 (705)
...++.|..++..|..++..++..+..+.+|..|+-+++.
T Consensus 9 s~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 9 SSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555444444
No 431
>PF14282 FlxA: FlxA-like protein
Probab=27.67 E-value=3.9e+02 Score=24.72 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 558 YYKQTQLETMASEKAAAEFQLEKEMNRL 585 (705)
Q Consensus 558 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (705)
.+|+.+++.|...+..|..||..+....
T Consensus 47 e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 47 EQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777655443
No 432
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.57 E-value=3.8e+02 Score=22.65 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (705)
Q Consensus 546 lE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e 588 (705)
|...|..|..++.+.+..+..+..+..+..-.-.|++.|+|.-
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445556666666666666666666666666667777777653
No 433
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=27.51 E-value=1.2e+03 Score=28.35 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccc
Q 005259 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQK 481 (705)
Q Consensus 431 seALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qe 481 (705)
...+..+-..+++...+++.++..+...+..+..++..++++|.+-..+|-
T Consensus 29 ~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqv 79 (701)
T PF09763_consen 29 EKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQV 79 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Confidence 344566777888888999999999999999999999999999988888773
No 434
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.44 E-value=1e+03 Score=27.66 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005259 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATL 465 (705)
Q Consensus 419 Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqL 465 (705)
-...|.+.......+-.++++.++..+..+..+.--+..+.++...+
T Consensus 442 ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl 488 (542)
T KOG0993|consen 442 EIQSLQEQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERL 488 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34444444444444445566666666555555544444444444444
No 435
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=27.26 E-value=1e+03 Score=27.49 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=7.2
Q ss_pred cCCCCCCCCCcccc
Q 005259 166 LNHPPSPLPPKEMG 179 (705)
Q Consensus 166 ~~~~~~~~~~~~~~ 179 (705)
++.|||.-.++||.
T Consensus 219 l~~~~~~gs~~E~~ 232 (455)
T KOG3850|consen 219 LVSPPKYGSDDECS 232 (455)
T ss_pred ccCCCCCCCCcccc
Confidence 34555555555553
No 436
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=26.33 E-value=92 Score=31.48 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005259 434 LARIQRIADERTAKAGELEQKV 455 (705)
Q Consensus 434 LaelQrkLeEe~aea~eLeqQl 455 (705)
|..++.+++++.-+-.-|+..+
T Consensus 2 LeD~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 4566777777776666555544
No 437
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=26.31 E-value=3.8e+02 Score=22.21 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e 378 (705)
+...+..|+.++..|..+...++..+..+..++..|..
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777788888888877777777777777777766654
No 438
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=26.23 E-value=6.5e+02 Score=24.95 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=19.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005259 359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401 (705)
Q Consensus 359 l~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~ 401 (705)
+..++.+++++......+++.+..+..+ +..++.++..++++
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~-~~~l~~~~q~~~q~ 137 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQR-IEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4444444444444444444444444444 44444444444443
No 439
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=25.96 E-value=69 Score=24.85 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 005259 665 FYLVFVHLFLMYLLHR 680 (705)
Q Consensus 665 vYmvlLHLWVm~VL~~ 680 (705)
+|+.+|-++|+.|||+
T Consensus 19 Ly~GlLlifvl~vLFs 34 (39)
T PRK00753 19 LYLGLLLVFVLGILFS 34 (39)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5888888999999985
No 440
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=25.90 E-value=6.1e+02 Score=25.59 Aligned_cols=18 Identities=11% Similarity=0.313 Sum_probs=6.8
Q ss_pred ccccchhhhhchhhHHhh
Q 005259 222 KDADVKVETLSNKRKQQA 239 (705)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~ 239 (705)
+..|++..-+-.++.-..
T Consensus 45 ~~~~l~~~l~~~q~~ak~ 62 (184)
T PF05791_consen 45 KLSDLQKDLVQHQKTAKE 62 (184)
T ss_dssp T-TTHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 344444433333433333
No 441
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=25.86 E-value=59 Score=30.25 Aligned_cols=18 Identities=33% Similarity=0.761 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005259 659 ARIILLFYLVFVHLFLMY 676 (705)
Q Consensus 659 ARl~vlvYmvlLHLWVm~ 676 (705)
.-+|++.|+++-|+|+-.
T Consensus 25 isffllayllmahiwlsw 42 (138)
T PF05663_consen 25 ISFFLLAYLLMAHIWLSW 42 (138)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456789999999999754
No 442
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.83 E-value=4.6e+02 Score=30.43 Aligned_cols=74 Identities=18% Similarity=0.322 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (705)
|..+...+..++...|..++.....+......+......|..++..+..+++.++..+.+++.++..+.-.+-.
T Consensus 34 ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipN 107 (429)
T COG0172 34 LDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPN 107 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCC
Confidence 33344555555555555566666656544444444456677777777777777777777777777776665544
No 443
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=25.72 E-value=6.8e+02 Score=25.00 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005259 272 ARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSS 351 (705)
Q Consensus 272 ~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~r 351 (705)
+++....-.++-...++++.+..++. ..+..+..+....+.++.+++.++. .++..-
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k-------------~~~~~lr~~~e~L~~eie~l~~~L~----------~ei~~l 103 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRK-------------SEFAELRSENEKLQREIEKLRQELR----------EEINKL 103 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005259 352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (705)
Q Consensus 352 l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l 402 (705)
.....-++...|.++.+.....+.=...++..-+.-++.++.+|.+++-..
T Consensus 104 ~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 104 RAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 444
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=25.60 E-value=4.5e+02 Score=26.83 Aligned_cols=26 Identities=8% Similarity=0.188 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259 353 DALKKQAALSEGNLASLQMNMESIMR 378 (705)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e 378 (705)
+.++..++.++.+...++.++++...
T Consensus 140 e~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 140 EEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666665544
No 445
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=25.10 E-value=8.6e+02 Score=25.97 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259 349 VSSIDALKKQAALSEGNLASLQMNMESI 376 (705)
Q Consensus 349 e~rl~~Le~el~~~K~rleele~E~~rl 376 (705)
+..+..++..+...+.++..++.+.++.
T Consensus 107 ~~~i~~~~~~~~~a~~~l~~a~~~~~r~ 134 (334)
T TIGR00998 107 QAKVESLKIKLEQAREKLLQAELDLRRR 134 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3334444444444444444444444443
No 446
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=25.09 E-value=1.4e+03 Score=28.38 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=29.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005259 455 VAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRD 509 (705)
Q Consensus 455 ls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~Lk~EL~~~rq~qr~ 509 (705)
+..+..+...|++++..+..+..........-...+.+|...|..|...++..++
T Consensus 72 v~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~E 126 (766)
T PF10191_consen 72 VDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQE 126 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444332333333445666677777776666555
No 447
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=24.98 E-value=4.1e+02 Score=26.05 Aligned_cols=73 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred CchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259 246 PTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGL---SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ 318 (705)
Q Consensus 246 ~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RL---rk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQa 318 (705)
+..+...++.++..+++....+.++++||.++..-. ...+..+.....+...++..-+.+...|.++...|..
T Consensus 21 ~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 21 LRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
No 448
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=24.91 E-value=1.8e+02 Score=24.09 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005259 311 ARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349 (705)
Q Consensus 311 ~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le 349 (705)
.++..|+.-|..+++.+....+....+++....+...|.
T Consensus 4 ~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr 42 (52)
T PF12808_consen 4 LRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLR 42 (52)
T ss_pred HHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHH
Confidence 356667777777776555555544444333333333333
No 449
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=24.77 E-value=5.7e+02 Score=24.42 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 005259 313 IKQLEQELSVYKSEVT 328 (705)
Q Consensus 313 l~~LQaeL~~EQ~~l~ 328 (705)
+..|.+++...++.+.
T Consensus 10 ~~~l~~~v~~lRed~r 25 (112)
T PF07439_consen 10 LGTLNAEVKELREDIR 25 (112)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 450
>PF15294 Leu_zip: Leucine zipper
Probab=24.71 E-value=9.5e+02 Score=26.35 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcc
Q 005259 459 EVECATLQQELQDMEARLKRGQ 480 (705)
Q Consensus 459 E~elkqLkQeLq~lE~e~~r~q 480 (705)
+...+.+...|..+..++-+.|
T Consensus 214 ~~~~k~L~e~L~~~KhelL~~Q 235 (278)
T PF15294_consen 214 ESQQKALEETLQSCKHELLRVQ 235 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3333444444444444444444
No 451
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.60 E-value=5e+02 Score=23.01 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
-+|++|......|.++........+.++.++.++++++..-..+
T Consensus 25 mEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQer 68 (79)
T COG3074 25 MEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQER 68 (79)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666665554444
No 452
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=24.42 E-value=1.2e+03 Score=27.25 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=20.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHH
Q 005259 359 AALSEGNLASLQMNMESIMRNREL-------TETRMIQALREELASVERRA 402 (705)
Q Consensus 359 l~~~K~rleele~E~~rl~e~l~~-------~ekeilqSLE~eLkslq~~l 402 (705)
+..++..+.+++.++..++..+.. +..+ +.+|+..|...++++
T Consensus 288 I~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~r-I~aLe~QIa~er~kl 337 (434)
T PRK15178 288 IAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAK-IKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHH-HHHHHHHHHHHHHHh
Confidence 444444444455555555443333 2333 455555555555544
No 453
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=24.35 E-value=9.2e+02 Score=26.04 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHcc
Q 005259 436 RIQRIADERTAKAGELEQKVAML-EVECATLQQELQDMEARLKRGQ 480 (705)
Q Consensus 436 elQrkLeEe~aea~eLeqQls~L-E~elkqLkQeLq~lE~e~~r~q 480 (705)
.+.+.|+....+++.|..|+..+ +.++.-+.+.|+.+.-+.+|+|
T Consensus 161 ~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQ 206 (289)
T COG4985 161 PLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQ 206 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677778888888888887766 4566777777777776666665
No 454
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.34 E-value=6.3e+02 Score=24.65 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 005259 388 IQALREELASVERRA 402 (705)
Q Consensus 388 lqSLE~eLkslq~~l 402 (705)
+..|+.-.+.+...+
T Consensus 64 L~~Le~~~~~~~~e~ 78 (160)
T PF13094_consen 64 LQELEKNAKALERER 78 (160)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 455
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.21 E-value=2.3e+02 Score=27.19 Aligned_cols=52 Identities=21% Similarity=0.423 Sum_probs=39.0
Q ss_pred hhhhHHHHHHHhHhhhhhhhhhHhhhcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 005259 629 AGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRL 681 (705)
Q Consensus 629 ~~~~~~vk~Aa~~lDs~slr~g~fLRRyP~ARl~vlvYmvlLHLWVm~VL~~~ 681 (705)
...+.++...++.+-..+.++-+-+| +--.++.+++-+|++=|.+++|++.|
T Consensus 63 ~drad~L~~~as~F~~~A~klkrk~w-Wkn~Km~~il~~v~~i~l~iiii~~~ 114 (116)
T KOG0860|consen 63 DDRADQLQAGASQFEKTAVKLKRKMW-WKNCKMRIILGLVIIILLVVIIIYIF 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777888888888888888888 77777777777777777777776655
No 456
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=24.07 E-value=4.8e+02 Score=22.62 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (705)
Q Consensus 295 LEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es 332 (705)
||+.+..+=..|..|...-..|-.++...+.++.++.+
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~e 42 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLE 42 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433333334444444444444444444444444443
No 457
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.02 E-value=5.9e+02 Score=24.83 Aligned_cols=6 Identities=33% Similarity=0.445 Sum_probs=2.3
Q ss_pred HHHHHH
Q 005259 292 NAQLEE 297 (705)
Q Consensus 292 ~aqLEe 297 (705)
.++||.
T Consensus 29 ~~~LE~ 34 (160)
T PF13094_consen 29 KRALER 34 (160)
T ss_pred HHHHHH
Confidence 333443
No 458
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=23.85 E-value=8.4e+02 Score=25.39 Aligned_cols=178 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 005259 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEAR------------IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET 347 (705)
Q Consensus 280 RLrk~~~elks~~aqLEell~el~e~~~~L~~r------------l~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~ 347 (705)
+.+++...|.+.+...-..+..++.....+... +..|+..|......+...+. +++..++.+..
T Consensus 35 ~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~----~l~~~~~~l~~ 110 (240)
T PF12795_consen 35 KQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQE----QLQQENSQLIE 110 (240)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 005259 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNR-ELTETRMIQALREELASVERRAEE---ERAAHNATKMAAMEREVEL 423 (705)
Q Consensus 348 Le~rl~~Le~el~~~K~rleele~E~~rl~e~l-~~~ekeilqSLE~eLkslq~~le~---E~~aH~aTk~ea~~Re~eL 423 (705)
+..+...+...+...+.++.++...+......= ..+.......++.++..+...... |...+.....=...|...+
T Consensus 111 ~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~ 190 (240)
T PF12795_consen 111 IQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLL 190 (240)
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHH
Q 005259 424 EHRAAEASMALARIQRIADERT-AKAGELEQKVAMLEVE 461 (705)
Q Consensus 424 Eee~~eLseALaelQrkLeEe~-aea~eLeqQls~LE~e 461 (705)
......+..-+..++..+...+ .++...-.+...+..+
T Consensus 191 ~~~~~~l~~~l~~Lq~~ln~~R~~eae~~~~~a~~~~~~ 229 (240)
T PF12795_consen 191 KARIQRLQQQLQALQNLLNQKRRQEAEQAVEEAEQLQEE 229 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=23.76 E-value=96 Score=25.22 Aligned_cols=25 Identities=28% Similarity=0.665 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH--HHHhhhhhh
Q 005259 661 IILLFYLVFVHLFLMY--LLHRLQEQA 685 (705)
Q Consensus 661 l~vlvYmvlLHLWVm~--VL~~~~~~~ 685 (705)
|++|++++..-+|.+| |||+.+|.+
T Consensus 17 IC~Fl~~~~~F~~F~~Kqilfr~~~~s 43 (54)
T PF06716_consen 17 ICLFLFCLVVFIWFVYKQILFRNNPQS 43 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCc
No 460
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=23.73 E-value=9.4e+02 Score=25.92 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=5.8
Q ss_pred HHHHHHhhhhHHHH
Q 005259 273 RLARVCAGLSSRLQ 286 (705)
Q Consensus 273 qLa~~~~RLrk~~~ 286 (705)
-|..+...|.+.+.
T Consensus 127 ~l~~l~~~le~~l~ 140 (297)
T PF02841_consen 127 LLQELFQPLEEKLK 140 (297)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 461
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.66 E-value=1.3e+03 Score=27.69 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005259 352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (705)
Q Consensus 352 l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~ 404 (705)
++.+..+++..+..+..+..++....+.+...-.+++++-..+++.+.+.+..
T Consensus 221 ~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~ 273 (555)
T TIGR03545 221 FDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAI 273 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCC
Confidence 33333334444444444444444444444444444455555667777666654
No 462
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.64 E-value=8.9e+02 Score=25.63 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHH
Q 005259 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (705)
Q Consensus 340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ek 385 (705)
+.+++.+....++..++.+...++...+.+..|-+++.++.+.+.+
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3333333444444444444444444455555555555444444433
No 463
>PRK02793 phi X174 lysis protein; Provisional
Probab=23.43 E-value=4.9e+02 Score=22.58 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 005259 290 SENAQLEELLVAERELSRSYEARI 313 (705)
Q Consensus 290 s~~aqLEell~el~e~~~~L~~rl 313 (705)
.|+..||..+.-+.+....|..-+
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v 31 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTV 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443333333333333333
No 464
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=23.31 E-value=5.2e+02 Score=22.75 Aligned_cols=44 Identities=14% Similarity=0.009 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 343 SEIETLVSSIDALKKQAAL-SEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 343 ~eie~Le~rl~~Le~el~~-~K~rleele~E~~rl~e~l~~~eke 386 (705)
.+.=+|.=++.+|++.+.. .-.....+..++-.++-.+..+.++
T Consensus 14 KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~e 58 (75)
T PF07989_consen 14 KENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRE 58 (75)
T ss_pred HhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555442 2233333333333333333333333
No 465
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.96 E-value=5.3e+02 Score=22.75 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
+..|..++..++.++..++..+..++..+..++..+
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555544444433
No 466
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=22.86 E-value=8.3e+02 Score=24.95 Aligned_cols=12 Identities=33% Similarity=0.398 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 005259 394 ELASVERRAEEE 405 (705)
Q Consensus 394 eLkslq~~le~E 405 (705)
.|+.++..+..|
T Consensus 155 Ll~~le~e~~~e 166 (201)
T PF12072_consen 155 LLEKLEEEARRE 166 (201)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 467
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.85 E-value=8.2e+02 Score=24.94 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 005259 354 ALKKQAALSEGNLASLQMNM 373 (705)
Q Consensus 354 ~Le~el~~~K~rleele~E~ 373 (705)
.++.++...+.++.+++..+
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i 92 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKI 92 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 468
>PTZ00464 SNF-7-like protein; Provisional
Probab=22.72 E-value=8.9e+02 Score=25.31 Aligned_cols=20 Identities=5% Similarity=0.160 Sum_probs=9.7
Q ss_pred HhhhhHHHHHHHHHHHHHHH
Q 005259 278 CAGLSSRLQEYKSENAQLEE 297 (705)
Q Consensus 278 ~~RLrk~~~elks~~aqLEe 297 (705)
..+|++++..+.+++.+|+.
T Consensus 20 ~~~l~~r~~~l~kKi~~ld~ 39 (211)
T PTZ00464 20 SKRIGGRSEVVDARINKIDA 39 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544444
No 469
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=22.68 E-value=1.1e+03 Score=26.38 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 005259 345 IETLVSSIDALKKQAALSEGN 365 (705)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~r 365 (705)
+++|.++...|++++.+.|--
T Consensus 68 ~~elneEkrtLeRELARaKV~ 88 (351)
T PF07058_consen 68 VQELNEEKRTLERELARAKVS 88 (351)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 445555555566666665543
No 470
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=22.55 E-value=1.2e+03 Score=26.91 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 312 RIKQLEQELSVYKSEVTKVESNLAE 336 (705)
Q Consensus 312 rl~~LQaeL~~EQ~~l~q~es~~~e 336 (705)
++..|..+|...+.-+......+.+
T Consensus 152 Ev~~LRreLavLRQl~~~~~~~~~~ 176 (424)
T PF03915_consen 152 EVQSLRRELAVLRQLYSEFQSEVKE 176 (424)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444433333
No 471
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=22.53 E-value=3e+02 Score=24.79 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005259 305 LSRSYEARIKQLEQELSVYKSEVTKVESNLAEAL-------AAKNSEIETLVSSIDALKKQAALSEGNLASLQ 370 (705)
Q Consensus 305 ~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~eal-------sak~~eie~Le~rl~~Le~el~~~K~rleele 370 (705)
.-..|+..+..||..|..++.-+.-++.-+.-.- +..-..+.+|-.+|..++.++..++..+..+.
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~ 81 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLY 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777776666665553111000 11222333444455555555555555444443
No 472
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=22.37 E-value=1.4e+03 Score=27.40 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=11.1
Q ss_pred hhHHHHHHHhHhhhhhhh
Q 005259 631 ASVQLQKAAKLLDSGAVR 648 (705)
Q Consensus 631 ~~~~vk~Aa~~lDs~slr 648 (705)
.++-+..++..||+|.+.
T Consensus 475 ~~~~i~~~l~~i~~~~v~ 492 (555)
T TIGR03545 475 ATKYILQVLKKIDVLTVD 492 (555)
T ss_pred HHHHHHHHHhhCCeeEEE
Confidence 455666666666666543
No 473
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=22.25 E-value=1.4e+03 Score=27.43 Aligned_cols=37 Identities=24% Similarity=0.456 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhHHHHhhh---hhHHHHHHHHHHHHHHhh
Q 005259 496 WQDEVERARQGQRDAENKL---SSLEAEVQKMRVEMAAMK 532 (705)
Q Consensus 496 Lk~EL~~~rq~qr~l~~kl---~s~E~elqkLr~e~~~~k 532 (705)
|+.|+..+++.-+-.++.+ ...+.++..+........
T Consensus 328 L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~ 367 (570)
T COG4477 328 LKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEIL 367 (570)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665533222221 234555555555544433
No 474
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=22.19 E-value=8.6e+02 Score=27.29 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005259 345 IETLVSSIDALKKQAALSEGNLASLQMN 372 (705)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E 372 (705)
..+|+++-..+++.....+.+++++..-
T Consensus 6 W~eL~~efq~Lqethr~Y~qKleel~~l 33 (330)
T PF07851_consen 6 WEELQKEFQELQETHRSYKQKLEELSKL 33 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555455555554444433
No 475
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=22.13 E-value=54 Score=33.35 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=27.4
Q ss_pred hhcchhHHHH--HHHHHHHHHHHHHHHHHhhhhhh
Q 005259 653 LWRYPIARII--LLFYLVFVHLFLMYLLHRLQEQA 685 (705)
Q Consensus 653 LRRyP~ARl~--vlvYmvlLHLWVm~VL~~~~~~~ 685 (705)
=+|-|++|++ ++.+|.|+-|.|||--+||-+.|
T Consensus 79 ~~rlk~t~lI~~alAfl~Cv~~Lv~YKa~wYDqsC 113 (186)
T PF06387_consen 79 SERLKVTRLIAFALAFLGCVVFLVMYKAIWYDQSC 113 (186)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhheeeeecccC
Confidence 3688999974 56789999999999999998764
No 476
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=22.09 E-value=96 Score=23.95 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 005259 665 FYLVFVHLFLMYLLHR 680 (705)
Q Consensus 665 vYmvlLHLWVm~VL~~ 680 (705)
.|+.+|-++|+.|||+
T Consensus 17 LY~GLllifvl~vLFs 32 (37)
T PF02419_consen 17 LYWGLLLIFVLAVLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5888888999999985
No 477
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.01 E-value=6.9e+02 Score=23.72 Aligned_cols=94 Identities=20% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----------------------------
Q 005259 296 EELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE----------------------------- 346 (705)
Q Consensus 296 Eell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie----------------------------- 346 (705)
+..+..+......|+..+..|+..+.. +.....++...+.+.+....
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~----l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v 80 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEE----LQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIV 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEE
Q ss_pred ----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005259 347 ----------TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREE 394 (705)
Q Consensus 347 ----------~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~e 394 (705)
++...+..++..+..+...+.+++.+...+.+.++..... ++.+..+
T Consensus 81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~-l~~l~~~ 137 (140)
T PRK03947 81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQE-LQQLQQE 137 (140)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
No 478
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=21.76 E-value=7.3e+02 Score=23.92 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 005259 543 HMELEKRYRELTDLLYYKQT 562 (705)
Q Consensus 543 ~~elE~rl~eLtE~L~eKQ~ 562 (705)
..+++.++..|++.++.|=.
T Consensus 120 ~~~l~~qv~~~~~~~~~~~~ 139 (141)
T PRK08476 120 KEQLLSQMPEFKEALNAKLS 139 (141)
T ss_pred HHHHHHhHHHHHHHHHHHhh
Confidence 46778888999988887743
No 479
>PRK10869 recombination and repair protein; Provisional
Probab=21.67 E-value=1.4e+03 Score=27.14 Aligned_cols=231 Identities=8% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHh
Q 005259 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE------GNLASLQMNMESIMRNR 380 (705)
Q Consensus 307 ~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K------~rleele~E~~rl~e~l 380 (705)
..+-++.......+...+..+...+. ....+........+...+++.++-++.++. ...++++.+.++
T Consensus 143 ~~lLD~~~~~~~~~~~~~~~y~~~~~-~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~----- 216 (553)
T PRK10869 143 KTLLDAYANETSLLQEMRAAYQLWHQ-SCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKR----- 216 (553)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH-----
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 381 ELTETRMIQALREELASVERRAEEERA-A------HNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQ 453 (705)
Q Consensus 381 ~~~ekeilqSLE~eLkslq~~le~E~~-a------H~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeq 453 (705)
+.+.++....++..+..=.. . .=..-...+......-..-..+.+.+..+.-.+++....+.....
T Consensus 217 -------L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 289 (553)
T PRK10869 217 -------LANSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLD 289 (553)
T ss_pred -------HHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 005259 454 KVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKR 533 (705)
Q Consensus 454 Qls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~ 533 (705)
.+..=...++.+..+|..+..=.++--....+......+++.--.++.........++.++..+..++..+...++..+.
T Consensus 290 ~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 290 RLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcccchhhhHHHHHHHHHH
Q 005259 534 DAEHYSREEHMELEKRYREL 553 (705)
Q Consensus 534 q~~els~q~~~elE~rl~eL 553 (705)
.. -..+.......++.|
T Consensus 370 ~a---A~~l~~~v~~~L~~L 386 (553)
T PRK10869 370 RY---AKELAQLITESMHEL 386 (553)
T ss_pred HH---HHHHHHHHHHHHHHc
No 480
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=21.61 E-value=6.4e+02 Score=23.22 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005259 385 TRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECAT 464 (705)
Q Consensus 385 keilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkq 464 (705)
++-+--.+..|..-+.........-..-......+...|+.....+-.-+.....+...+..++..-.+.......++..
T Consensus 6 kre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~ 85 (126)
T PF13863_consen 6 KREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKK 85 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHcccCChH
Q 005259 465 LQQELQDMEARLKRGQKKSPE 485 (705)
Q Consensus 465 LkQeLq~lE~e~~r~qek~~~ 485 (705)
++.+|..+.....++.+.+..
T Consensus 86 l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 86 LKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 481
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.61 E-value=4.7e+02 Score=24.56 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005259 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392 (705)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE 392 (705)
+.+..|+..+..+-.++..+|..+.++.+|+.+|.-+-.++-.+ +.-++
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~-l~~~~ 56 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER-LEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
No 482
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.57 E-value=6.9e+02 Score=23.61 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChH-----HHHHHHHHHHHHHHHHHHHhhhHHH
Q 005259 436 RIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE-----EANQAIQMQAWQDEVERARQGQRDA 510 (705)
Q Consensus 436 elQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~-----ea~q~~qL~~Lk~EL~~~rq~qr~l 510 (705)
.++..++........+.+++..+......+...+...+.-..-+..-... ...-+.-...+.+-...+...+..+
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i 83 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL 83 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHH
Q 005259 511 ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYREL 553 (705)
Q Consensus 511 ~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eL 553 (705)
+.+|..++.....|++.+ .+++.+++++
T Consensus 84 e~~ik~lekq~~~l~~~l---------------~e~q~~l~~l 111 (121)
T PRK09343 84 ELRSRTLEKQEKKLREKL---------------KELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
No 483
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=21.31 E-value=51 Score=30.65 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEAS 431 (705)
Q Consensus 352 l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLs 431 (705)
|..+..++..+......+..++..+...+...... ...+..-|..++...+.-... -.+++...+.
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~-~~~l~~~l~~aq~~a~~~~~~-------------A~~eA~~i~~ 92 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREE-EESLQRALIQAQETADEIKAE-------------AEEEAEEIIE 92 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHhhhhhhhhHHHHHHH-------------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259 432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (705)
Q Consensus 432 eALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeL 469 (705)
.|-......+.+...++..+..++..|.......+.++
T Consensus 93 ~A~~~a~~i~~~A~~~~~~l~~~~~~lk~~~~~~~~~~ 130 (131)
T PF05103_consen 93 EAQKEAEEIIEEARAEAERLREEIEELKRQAEQFRAQF 130 (131)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 484
>CHL00038 psbL photosystem II protein L
Probab=21.19 E-value=99 Score=23.94 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 005259 665 FYLVFVHLFLMYLLHR 680 (705)
Q Consensus 665 vYmvlLHLWVm~VL~~ 680 (705)
+|+.+|-++|..|||+
T Consensus 18 Ly~GLLlifvl~vlfs 33 (38)
T CHL00038 18 LYWGLLLIFVLAVLFS 33 (38)
T ss_pred HHHHHHHHHHHHHHHH
No 485
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=21.12 E-value=7e+02 Score=23.48 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005259 309 YEARIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~es---~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~ 374 (705)
|-.+...|-+.....+-++-..+. .+.+.|-.++..+.-++.++++|.=.-..+..|++.++.|++
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.01 E-value=7.2e+02 Score=23.58 Aligned_cols=94 Identities=17% Similarity=0.288 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Q 005259 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES----------------------------- 332 (705)
Q Consensus 282 rk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es----------------------------- 332 (705)
+..++.+.-...++...+..+......|...+..+...+.. +..+..
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~----l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v 80 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKET----LEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIV 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEE
Q ss_pred ----------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 333 ----------NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (705)
Q Consensus 333 ----------~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (705)
.+.++..-.+..+..|...+..++..+......++.++..+.++..+
T Consensus 81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.82 E-value=99 Score=39.11 Aligned_cols=33 Identities=30% Similarity=0.720 Sum_probs=0.0
Q ss_pred hhhhhHhhh------cchhHHHHHHHHH---------HHHHHHHHHHH
Q 005259 646 AVRATRFLW------RYPIARIILLFYL---------VFVHLFLMYLL 678 (705)
Q Consensus 646 slr~g~fLR------RyP~ARl~vlvYm---------vlLHLWVm~VL 678 (705)
+||+.|+|| |-|..||+|-+.+ ++|-||||||+
T Consensus 176 airtvrvlrplrainrvpsmrilvtllldtlpmlgnvlllcffvffif 223 (1956)
T KOG2302|consen 176 AIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIF 223 (1956)
T ss_pred hhhhhhhhhhhhHhccCchHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
No 488
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=20.65 E-value=6.4e+02 Score=22.86 Aligned_cols=95 Identities=16% Similarity=0.108 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005259 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (705)
Q Consensus 281 Lrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~ 360 (705)
|..-+..+......+-..+.........++.++..|..+.......|+.....+. .|..++..|...+.
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d-----------~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKD-----------ALDNEMKKLNTQLS 69 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 361 LSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 361 ~~K~rleele~E~~rl~e~l~~~eke 386 (705)
....-++.+.+-=..+...+..++++
T Consensus 70 Ks~~~i~~L~~~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 70 KSSELIEQLKETEKEFVRKLKNLEKE 95 (96)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhcc
No 489
>PLN02678 seryl-tRNA synthetase
Probab=20.55 E-value=6e+02 Score=29.57 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 498 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577 (705)
Q Consensus 498 ~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~q 577 (705)
.++-.+-+..+.+..++..+..+...+.+++...+. ......++..+++.|.+++......+..+..+...+..+
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~-----~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKI-----AKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H
Q 005259 578 L 578 (705)
Q Consensus 578 L 578 (705)
|
T Consensus 108 i 108 (448)
T PLN02678 108 I 108 (448)
T ss_pred C
No 490
>PRK00295 hypothetical protein; Provisional
Probab=20.42 E-value=5.5e+02 Score=22.03 Aligned_cols=49 Identities=6% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAE 336 (705)
Q Consensus 288 lks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~e 336 (705)
+..++..||..+.-+.+....|..-+...+.++...+..+..+...+.+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.41 E-value=5.7e+02 Score=23.26 Aligned_cols=61 Identities=25% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHH
Q 005259 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE 527 (705)
Q Consensus 453 qQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e 527 (705)
.++.-+|..+.+++..|+..+..+++.+ .+.++ =+.+..|+..+...... .|.++..||.+
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~e--Ls~e~-----R~~lE~E~~~l~~~l~~-------~E~eL~~LrkE 65 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRE--LSPEA-----RRSLEKELNELKEKLEN-------NEKELKLLRKE 65 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccC--CChHH-----HHHHHHHHHHHHHHhhc-------cHHHHHHHHHh
No 492
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=20.34 E-value=1.1e+03 Score=25.55 Aligned_cols=118 Identities=12% Similarity=0.127 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh---
Q 005259 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL--- 382 (705)
Q Consensus 306 ~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~--- 382 (705)
+..++..+.++++++...+..+...+..+. .-...+..++.++...+..++.++.+.++.+.=...
T Consensus 81 ~~~~~~~l~~a~a~l~~a~a~l~~~~~~~~-----------~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~v 149 (346)
T PRK10476 81 PRPYELTVAQAQADLALADAQIMTTQRSVD-----------AERSNAASANEQVERARANAKLATRTLERLEPLLAKGYV 149 (346)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 383 TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQR 439 (705)
Q Consensus 383 ~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQr 439 (705)
...+ +...+..+..++..+..-...+...+. ....+......+..+.+.+..
T Consensus 150 S~~~-~~~a~~~~~~a~~~l~~a~~~~~~~~~----~~~~~~~~~a~~~~~~a~l~~ 201 (346)
T PRK10476 150 SAQQ-VDQARTAQRDAEVSLNQALLQAQAAAA----AVGGVDALVAQRAAREAALAI 201 (346)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhhHHHHHHHHHHHHH
No 493
>PLN03221 rapid alkalinization factor 23; Provisional
Probab=20.24 E-value=77 Score=30.85 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=0.0
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHH
Q 005259 654 WRYPIARIILLFYLVFVHLFLMYL 677 (705)
Q Consensus 654 RRyP~ARl~vlvYmvlLHLWVm~V 677 (705)
|....|-||.|+.++-+|||-..|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (137)
T PLN03221 6 RNSGAAAIFAILLILAVHFWSVAV 29 (137)
T ss_pred ccccHHHHHHHHHHHHHHHHhhee
No 494
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=20.06 E-value=8.4e+02 Score=23.96 Aligned_cols=77 Identities=14% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 492 QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEK 571 (705)
Q Consensus 492 qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er 571 (705)
++..+...+.+...........+..+...|..|...... ..+....|...+......+...+.+|+.|..|.
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~--------~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~EN 91 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKR--------NEEAQAQLRQQLAQARALLAQREQRIERLKREN 91 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q ss_pred HHHHH
Q 005259 572 AAAEF 576 (705)
Q Consensus 572 ~sL~~ 576 (705)
..++.
T Consensus 92 e~lR~ 96 (135)
T TIGR03495 92 EDLRR 96 (135)
T ss_pred HHHHH
No 495
>PRK11519 tyrosine kinase; Provisional
Probab=20.03 E-value=1.6e+03 Score=27.33 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005259 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ-----ELSVYKSEVTKVESNLAEALAAKNSEIETLVSS 351 (705)
Q Consensus 277 ~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQa-----eL~~EQ~~l~q~es~~~ealsak~~eie~Le~r 351 (705)
....++.+.........-|++.+..++......+.++..... .+..+-..+-..-..+..++...+....+|..+
T Consensus 254 i~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~ 333 (719)
T PRK11519 254 LEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKL 333 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 352 IDALKKQAALSEGNLASLQMNMESIMRNREL---TETRMIQALREELASVERRAEEERAAHNATKMAA 416 (705)
Q Consensus 352 l~~Le~el~~~K~rleele~E~~rl~e~l~~---~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea 416 (705)
...-.-.+..++.++..++.++..+..++.. .+.+ +..|+.+.+..+.-+..=.+....++...
T Consensus 334 y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~-~~~L~Re~~~~~~lY~~lL~r~~e~~i~~ 400 (719)
T PRK11519 334 YTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQE-IVRLTRDVESGQQVYMQLLNKQQELKITE 400 (719)
T ss_pred hcccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Done!