Query 005259
Match_columns 705
No_of_seqs 169 out of 193
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 20:10:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o0z_A RHO-associated protein 99.9 2.4E-21 8.1E-26 187.0 21.6 159 241-415 3-165 (168)
2 1c1g_A Tropomyosin; contractIl 99.1 8.3E-06 2.8E-10 79.9 44.8 35 549-583 238-272 (284)
3 1c1g_A Tropomyosin; contractIl 99.0 2.9E-05 9.9E-10 76.0 44.8 41 545-585 241-281 (284)
4 1i84_S Smooth muscle myosin he 98.8 1.6E-08 5.6E-13 123.4 10.9 39 546-584 1121-1159(1184)
5 1i84_S Smooth muscle myosin he 98.6 6.7E-08 2.3E-12 118.1 10.8 100 279-382 860-959 (1184)
6 2v71_A Nuclear distribution pr 97.3 0.066 2.3E-06 53.0 23.3 140 299-463 12-154 (189)
7 3o0z_A RHO-associated protein 97.2 0.099 3.4E-06 50.8 22.9 93 383-476 60-159 (168)
8 3na7_A HP0958; flagellar bioge 96.8 0.34 1.2E-05 49.5 24.1 30 353-382 93-122 (256)
9 2v71_A Nuclear distribution pr 96.7 0.28 9.7E-06 48.5 21.7 159 405-588 11-173 (189)
10 2dfs_A Myosin-5A; myosin-V, in 96.6 0.057 1.9E-06 65.8 18.9 98 273-378 918-1019(1080)
11 3na7_A HP0958; flagellar bioge 96.6 0.37 1.3E-05 49.2 22.4 55 340-400 50-104 (256)
12 2dfs_A Myosin-5A; myosin-V, in 96.2 0.16 5.6E-06 61.9 19.9 25 450-474 1020-1044(1080)
13 3vkg_A Dynein heavy chain, cyt 95.9 1.6 5.6E-05 58.6 28.7 50 431-480 2020-2069(3245)
14 3vkg_A Dynein heavy chain, cyt 95.9 2.8 9.5E-05 56.5 30.5 91 493-591 2016-2106(3245)
15 2ocy_A RAB guanine nucleotide 95.6 1.3 4.6E-05 42.4 19.5 118 347-473 17-135 (154)
16 2ocy_A RAB guanine nucleotide 95.1 1.1 3.8E-05 43.0 16.9 85 493-579 60-146 (154)
17 4gkw_A Spindle assembly abnorm 94.1 3.1 0.00011 38.9 16.8 127 455-593 13-143 (167)
18 2efr_A General control protein 94.1 4.4 0.00015 38.9 23.6 30 348-377 26-55 (155)
19 2fxo_A Myosin heavy chain, car 93.9 3.8 0.00013 37.7 19.4 101 282-386 19-119 (129)
20 2efr_A General control protein 93.9 4.7 0.00016 38.7 21.1 86 295-380 26-114 (155)
21 2v66_B Nuclear distribution pr 93.1 5 0.00017 36.5 16.1 62 251-322 6-67 (111)
22 2fxo_A Myosin heavy chain, car 93.0 5.5 0.00019 36.7 19.4 59 415-473 66-124 (129)
23 3oja_B Anopheles plasmodium-re 92.4 0.7 2.4E-05 51.6 12.0 31 345-375 458-488 (597)
24 3oja_B Anopheles plasmodium-re 92.3 3 0.0001 46.4 16.8 21 360-380 512-532 (597)
25 1x79_B RAB GTPase binding effe 91.8 2.4 8.2E-05 38.7 12.4 94 274-381 11-108 (112)
26 2e7s_A RAB guanine nucleotide 90.9 1.1 3.9E-05 42.0 9.6 87 309-400 44-131 (135)
27 4gkw_A Spindle assembly abnorm 89.7 13 0.00045 34.7 19.1 46 428-473 115-160 (167)
28 2e7s_A RAB guanine nucleotide 88.7 1.3 4.4E-05 41.7 8.0 108 268-378 21-131 (135)
29 3u1c_A Tropomyosin alpha-1 cha 88.1 14 0.00046 32.8 16.2 15 458-472 84-98 (101)
30 2eqb_B RAB guanine nucleotide 88.1 14 0.00047 32.9 13.9 66 389-458 22-88 (97)
31 2v66_B Nuclear distribution pr 87.8 16 0.00054 33.3 15.6 29 346-374 38-66 (111)
32 3ol1_A Vimentin; structural ge 87.2 8.6 0.00029 35.0 12.5 37 516-560 66-102 (119)
33 2b9c_A Striated-muscle alpha t 85.4 10 0.00035 35.9 12.4 8 313-320 54-61 (147)
34 3a7p_A Autophagy protein 16; c 84.6 11 0.00037 36.0 12.1 70 309-382 66-135 (152)
35 1ic2_A Tropomyosin alpha chain 83.5 17 0.00057 30.8 11.8 30 351-380 21-50 (81)
36 3tnu_B Keratin, type II cytosk 83.5 23 0.00078 32.4 13.6 7 401-407 114-120 (129)
37 3u59_A Tropomyosin beta chain; 83.4 23 0.00078 31.1 15.7 28 351-378 10-37 (101)
38 3tnu_B Keratin, type II cytosk 83.3 26 0.00088 32.1 13.8 22 388-409 84-105 (129)
39 3hnw_A Uncharacterized protein 83.0 28 0.00096 32.5 14.1 18 272-289 28-45 (138)
40 2eqb_B RAB guanine nucleotide 83.0 25 0.00086 31.3 13.6 69 310-382 25-94 (97)
41 3tnu_A Keratin, type I cytoske 82.9 23 0.00077 32.5 13.4 9 400-408 115-123 (131)
42 3tnu_A Keratin, type I cytoske 81.6 24 0.00083 32.3 13.0 22 388-409 86-107 (131)
43 3hnw_A Uncharacterized protein 81.6 14 0.00049 34.5 11.6 51 347-398 79-129 (138)
44 1x79_B RAB GTPase binding effe 81.2 21 0.0007 32.6 12.0 77 306-382 8-84 (112)
45 2b9c_A Striated-muscle alpha t 80.6 35 0.0012 32.3 14.0 45 512-557 101-145 (147)
46 3cve_A Homer protein homolog 1 80.6 19 0.00066 30.3 10.7 47 340-386 11-57 (72)
47 3s4r_A Vimentin; alpha-helix, 80.5 20 0.00068 31.4 11.4 65 515-582 26-90 (93)
48 3s4r_A Vimentin; alpha-helix, 80.1 30 0.001 30.2 13.3 38 342-379 55-92 (93)
49 3a7p_A Autophagy protein 16; c 79.8 14 0.00047 35.4 10.8 47 544-590 78-124 (152)
50 2jee_A YIIU; FTSZ, septum, coi 79.7 19 0.00064 31.1 10.5 42 345-386 29-70 (81)
51 3mq9_A Bone marrow stromal ant 77.7 47 0.0016 35.9 16.0 17 315-331 401-417 (471)
52 3ghg_A Fibrinogen alpha chain; 76.8 64 0.0022 36.4 16.5 35 540-582 212-246 (562)
53 2jee_A YIIU; FTSZ, septum, coi 76.1 25 0.00087 30.3 10.4 69 510-586 11-79 (81)
54 3mq7_A Bone marrow stromal ant 75.5 39 0.0013 31.0 11.9 22 346-367 74-95 (121)
55 2i1j_A Moesin; FERM, coiled-co 74.9 2.6 9E-05 47.9 5.2 14 8-21 26-39 (575)
56 3cvf_A Homer-3, homer protein 74.8 27 0.00094 29.9 10.2 46 341-386 18-63 (79)
57 1m1j_B Fibrinogen beta chain; 74.6 98 0.0033 34.5 17.4 37 282-318 99-135 (464)
58 3mq9_A Bone marrow stromal ant 72.5 55 0.0019 35.3 14.8 19 510-528 448-466 (471)
59 1ic2_A Tropomyosin alpha chain 72.2 44 0.0015 28.2 11.6 19 313-331 8-26 (81)
60 3swk_A Vimentin; cytoskeleton, 68.3 13 0.00043 32.1 6.8 35 516-558 46-80 (86)
61 3iox_A AGI/II, PA; alpha helix 66.7 1.3E+02 0.0044 33.7 16.0 30 308-337 6-35 (497)
62 3ol1_A Vimentin; structural ge 65.9 77 0.0026 28.6 15.2 24 383-407 88-111 (119)
63 3oja_A Leucine-rich immune mol 65.5 92 0.0031 33.7 14.8 43 344-386 422-464 (487)
64 2i1j_A Moesin; FERM, coiled-co 64.4 6.9 0.00024 44.5 5.7 46 346-392 366-411 (575)
65 3i00_A HIP-I, huntingtin-inter 64.1 50 0.0017 30.3 10.3 40 543-582 42-81 (120)
66 1f5n_A Interferon-induced guan 62.8 1.8E+02 0.0062 33.1 16.9 62 267-332 482-547 (592)
67 3tul_A Cell invasion protein S 62.7 1.1E+02 0.0037 29.2 12.7 103 307-409 23-130 (158)
68 3cvf_A Homer-3, homer protein 62.4 60 0.002 27.8 9.7 62 341-403 11-72 (79)
69 3jsv_C NF-kappa-B essential mo 61.8 43 0.0015 29.6 8.9 27 306-332 42-68 (94)
70 2xdj_A Uncharacterized protein 61.3 79 0.0027 27.2 10.5 62 419-480 7-68 (83)
71 3cve_A Homer protein homolog 1 60.2 77 0.0026 26.7 10.4 60 343-403 7-66 (72)
72 3q8t_A Beclin-1; autophagy, AT 59.6 90 0.0031 27.3 14.7 55 347-402 29-83 (96)
73 1t3j_A Mitofusin 1; coiled coi 58.3 34 0.0011 30.4 7.7 65 248-326 29-93 (96)
74 3mq7_A Bone marrow stromal ant 57.5 1.2E+02 0.004 27.9 14.9 30 351-380 72-101 (121)
75 2w83_C C-JUN-amino-terminal ki 56.9 37 0.0013 28.9 7.3 56 320-375 21-76 (77)
76 2xdj_A Uncharacterized protein 56.8 90 0.0031 26.8 10.0 33 347-379 24-56 (83)
77 1wt6_A Myotonin-protein kinase 55.7 99 0.0034 26.6 9.9 21 358-378 46-66 (81)
78 3i00_A HIP-I, huntingtin-inter 55.0 1E+02 0.0035 28.2 10.7 63 313-382 17-79 (120)
79 1m1j_C Fibrinogen gamma chain; 55.0 1E+02 0.0035 33.7 12.6 45 428-472 23-67 (409)
80 1d7m_A Cortexillin I; coiled-c 52.4 1.2E+02 0.0041 26.6 14.4 25 421-445 35-59 (101)
81 1gk4_A Vimentin; intermediate 52.3 1.1E+02 0.0037 26.0 11.6 50 286-335 4-57 (84)
82 2oto_A M protein; helical coil 51.2 1.6E+02 0.0054 27.5 18.7 32 278-309 45-76 (155)
83 2v4h_A NF-kappa-B essential mo 51.0 1.4E+02 0.0049 27.0 12.7 11 274-284 26-36 (110)
84 2no2_A HIP-I, huntingtin-inter 50.6 1.4E+02 0.0047 26.7 14.6 33 348-380 59-91 (107)
85 3ghg_A Fibrinogen alpha chain; 49.9 1.8E+02 0.0061 32.9 13.4 15 649-663 487-501 (562)
86 2w6a_A ARF GTPase-activating p 47.4 70 0.0024 26.0 7.2 46 279-324 16-61 (63)
87 1l8d_A DNA double-strand break 47.2 1.4E+02 0.0049 25.9 13.1 12 309-320 29-40 (112)
88 3swk_A Vimentin; cytoskeleton, 46.5 1.4E+02 0.0048 25.6 11.4 29 307-335 10-38 (86)
89 3iv1_A Tumor susceptibility ge 46.3 1.4E+02 0.0048 25.5 11.6 31 340-370 43-73 (78)
90 1l8d_A DNA double-strand break 46.3 1.5E+02 0.005 25.8 13.3 16 309-324 22-37 (112)
91 1ci6_A Transcription factor AT 45.7 63 0.0021 26.1 6.9 40 341-380 21-60 (63)
92 1m1j_C Fibrinogen gamma chain; 45.6 2.2E+02 0.0076 31.1 13.4 26 282-307 30-55 (409)
93 1wt6_A Myotonin-protein kinase 44.6 1.4E+02 0.0048 25.7 9.1 55 255-320 14-68 (81)
94 1ik9_A DNA repair protein XRCC 44.5 1.8E+02 0.0063 28.9 11.6 56 350-405 146-201 (213)
95 1deq_A Fibrinogen (alpha chain 44.3 3.4E+02 0.012 29.4 15.4 24 360-383 63-86 (390)
96 1x8y_A Lamin A/C; structural p 43.9 1.4E+02 0.0046 25.5 9.2 24 312-335 36-59 (86)
97 3trt_A Vimentin; cytoskeleton, 43.3 1.4E+02 0.0047 24.5 9.8 45 543-587 30-74 (77)
98 2v4h_A NF-kappa-B essential mo 42.3 2E+02 0.0067 26.1 11.6 82 252-359 25-106 (110)
99 1wle_A Seryl-tRNA synthetase; 42.2 1.7E+02 0.0056 32.8 12.0 68 311-378 77-151 (501)
100 3oja_A Leucine-rich immune mol 41.6 3.6E+02 0.012 29.0 18.2 13 436-448 460-472 (487)
101 1d7m_A Cortexillin I; coiled-c 41.5 1.8E+02 0.0062 25.5 15.5 54 309-373 2-55 (101)
102 3ghg_C Fibrinogen gamma chain; 40.7 3.3E+02 0.011 29.8 13.7 39 281-319 29-67 (411)
103 3mov_A Lamin-B1; LMNB1, B-type 40.6 1.5E+02 0.0051 25.9 9.0 22 343-364 12-33 (95)
104 3nmd_A CGMP dependent protein 40.4 68 0.0023 27.0 6.4 27 342-368 39-65 (72)
105 3mov_A Lamin-B1; LMNB1, B-type 39.7 1.1E+02 0.0038 26.7 8.1 22 309-330 42-63 (95)
106 1t2k_D Cyclic-AMP-dependent tr 39.3 83 0.0028 25.0 6.7 39 341-379 20-58 (61)
107 3iv1_A Tumor susceptibility ge 38.5 1.6E+02 0.0056 25.1 8.6 16 251-266 14-29 (78)
108 3efg_A Protein SLYX homolog; x 38.1 52 0.0018 27.9 5.5 47 279-325 10-56 (78)
109 1deq_A Fibrinogen (alpha chain 37.3 4.3E+02 0.015 28.7 14.7 39 356-395 119-157 (390)
110 2oqq_A Transcription factor HY 35.9 1E+02 0.0035 23.4 6.0 34 345-378 5-38 (42)
111 3iyk_A VP5; icosahedral virus; 35.6 5.2E+02 0.018 29.0 20.2 80 341-423 144-223 (526)
112 3nmd_A CGMP dependent protein 34.1 1.2E+02 0.0041 25.6 6.9 36 340-375 30-65 (72)
113 2zqm_A Prefoldin beta subunit 33.2 2.4E+02 0.0081 24.4 12.9 28 347-374 74-101 (117)
114 1jnm_A Proto-oncogene C-JUN; B 32.8 1.6E+02 0.0055 23.4 7.4 39 341-379 20-58 (62)
115 2no2_A HIP-I, huntingtin-inter 32.5 2.7E+02 0.0092 24.8 15.6 41 337-377 62-102 (107)
116 2ke4_A CDC42-interacting prote 32.5 2.6E+02 0.0088 24.6 9.5 27 305-331 16-42 (98)
117 1jcd_A Major outer membrane li 32.0 1.9E+02 0.0064 22.8 7.5 41 546-586 9-49 (52)
118 2wt7_A Proto-oncogene protein 31.8 1.4E+02 0.0048 23.9 6.9 40 341-380 21-60 (63)
119 3qne_A Seryl-tRNA synthetase, 31.8 1.6E+02 0.0054 32.9 9.7 70 309-379 38-107 (485)
120 3qh9_A Liprin-beta-2; coiled-c 31.4 2.5E+02 0.0086 24.1 9.6 57 292-352 18-77 (81)
121 3q8t_A Beclin-1; autophagy, AT 31.0 2.7E+02 0.0091 24.3 15.0 25 456-480 70-94 (96)
122 1x8y_A Lamin A/C; structural p 30.9 2.5E+02 0.0084 23.9 9.6 11 399-409 65-75 (86)
123 1ses_A Seryl-tRNA synthetase; 30.8 1.5E+02 0.0053 32.1 9.2 66 309-377 33-98 (421)
124 2dq0_A Seryl-tRNA synthetase; 30.2 1.7E+02 0.0057 32.3 9.5 71 309-380 36-106 (455)
125 3cl3_D NF-kappa-B essential mo 30.0 83 0.0029 29.2 5.8 76 300-382 26-101 (130)
126 2k48_A Nucleoprotein; viral pr 29.0 2E+02 0.007 25.8 7.9 30 344-373 36-65 (107)
127 1g6u_A Domain swapped dimer; d 28.4 1.5E+02 0.0051 22.3 5.9 11 517-527 32-42 (48)
128 4dk0_A Putative MACA; alpha-ha 28.1 1.1E+02 0.0036 31.7 7.1 20 356-375 128-147 (369)
129 2pnv_A Small conductance calci 28.1 1.2E+02 0.004 23.1 5.4 27 298-324 10-36 (43)
130 1f5n_A Interferon-induced guan 26.7 7.4E+02 0.025 28.1 20.0 56 414-469 462-517 (592)
131 1go4_E MAD1 (mitotic arrest de 26.4 2.6E+02 0.009 24.8 8.2 65 447-511 13-95 (100)
132 4emc_A Monopolin complex subun 26.3 98 0.0034 30.5 5.9 47 355-402 11-57 (190)
133 3cl3_D NF-kappa-B essential mo 26.2 1.3E+02 0.0045 27.9 6.4 45 352-397 4-48 (130)
134 3c9i_A Tail needle protein GP2 25.8 4.6E+02 0.016 26.2 10.6 31 337-367 99-129 (242)
135 3m91_A Proteasome-associated A 24.9 2.3E+02 0.008 22.2 6.8 8 290-297 23-30 (51)
136 3arc_L Photosystem II reaction 24.7 51 0.0017 24.3 2.7 16 665-680 17-32 (37)
137 3s9g_A Protein hexim1; cyclin 24.6 3.8E+02 0.013 23.9 9.0 26 549-574 66-91 (104)
138 3iox_A AGI/II, PA; alpha helix 24.2 7.9E+02 0.027 27.5 15.3 44 306-349 11-54 (497)
139 3m9b_A Proteasome-associated A 23.1 72 0.0024 32.8 4.5 42 547-588 53-94 (251)
140 4dzn_A Coiled-coil peptide CC- 23.0 1.8E+02 0.006 20.5 5.0 22 379-401 10-31 (33)
141 2p22_A Suppressor protein STP2 22.5 3.8E+02 0.013 25.9 9.3 26 342-367 62-87 (174)
142 1t3j_A Mitofusin 1; coiled coi 22.4 3.1E+02 0.01 24.3 7.8 36 341-376 52-90 (96)
143 3qh9_A Liprin-beta-2; coiled-c 22.4 3.7E+02 0.013 23.1 8.2 34 544-577 43-76 (81)
144 3t98_B Nucleoporin NUP58/NUP45 22.3 3.5E+02 0.012 23.6 8.1 73 276-369 12-84 (93)
145 2w6a_A ARF GTPase-activating p 22.3 3.2E+02 0.011 22.2 7.3 41 336-376 20-60 (63)
146 2ww9_C Protein transport prote 22.2 27 0.00091 30.5 1.0 16 661-676 69-84 (87)
147 3q0x_A Centriole protein; cent 22.1 2.1E+02 0.0073 28.8 7.7 43 547-589 170-212 (228)
148 3he5_B Synzip2; heterodimeric 22.0 2.7E+02 0.0092 21.3 6.5 40 280-319 7-46 (52)
149 2wwb_C SEC61BETA, protein tran 21.9 20 0.00067 31.9 0.1 14 661-674 78-91 (96)
150 4etp_A Kinesin-like protein KA 21.3 2.2E+02 0.0076 30.7 8.2 38 344-381 4-41 (403)
151 3m91_A Proteasome-associated A 21.0 1.9E+02 0.0063 22.8 5.5 41 282-322 8-48 (51)
152 4emc_A Monopolin complex subun 21.0 4.9E+02 0.017 25.6 9.7 27 340-366 38-64 (190)
153 4h22_A Leucine-rich repeat fli 20.5 4.6E+02 0.016 23.4 11.6 59 319-377 20-78 (103)
154 1fxk_C Protein (prefoldin); ar 20.3 4.6E+02 0.016 23.3 13.0 28 352-379 90-117 (133)
155 1cxz_B Protein (PKN); protein- 20.2 2.9E+02 0.01 23.9 7.1 48 248-299 18-65 (86)
No 1
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=99.88 E-value=2.4e-21 Score=187.04 Aligned_cols=159 Identities=23% Similarity=0.227 Sum_probs=139.7
Q ss_pred hcCCCCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259 241 KADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (705)
Q Consensus 241 ~~~ek~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL 320 (705)
+.|||+++|++||+|+|.+||+|+|+ ++||+|..+++.+..+++|..+++++++++.|+.....|+.++
T Consensus 3 ~~neKi~~LekQL~E~n~kLk~EsE~-----------~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~ 71 (168)
T 3o0z_A 3 LANEKLSQLQKQLEEANDLLRTESDT-----------AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDY 71 (168)
T ss_dssp -------CTHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999996 9999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHH
Q 005259 321 SVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR----EELA 396 (705)
Q Consensus 321 ~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE----~eLk 396 (705)
...|..+.+.++ ... -+.+.+.+|++++.+|+.++.+++.++.+++.+++.|++++++++|+ +++++ ++|+
T Consensus 72 ~~LQa~L~qEr~-~r~---q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe-~a~~eid~~~eLK 146 (168)
T 3o0z_A 72 YQLQAILEAERR-DRG---HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE-KNNLEIDLNYKLK 146 (168)
T ss_dssp HHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Confidence 888888888876 222 36778889999999999999999999999999999999999999999 99999 8899
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005259 397 SVERRAEEERAAHNATKMA 415 (705)
Q Consensus 397 slq~~le~E~~aH~aTk~e 415 (705)
++|++|++|..+|++|++.
T Consensus 147 alQ~~~eqE~~~H~~Tkar 165 (168)
T 3o0z_A 147 SLQQRLEQEVNEHKVTKAR 165 (168)
T ss_dssp HHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999773
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.13 E-value=8.3e-06 Score=79.89 Aligned_cols=35 Identities=9% Similarity=0.056 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583 (705)
Q Consensus 549 rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~ 583 (705)
++..+...+...+..+..+..+.+.+..++.++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
T 1c1g_A 238 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISE 272 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444443333
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.00 E-value=2.9e-05 Score=76.03 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 585 (705)
Q Consensus 545 elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~ 585 (705)
.++..+..+...+...+..+..+....+.+..+++.+..++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555566666666666666666555443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.75 E-value=1.6e-08 Score=123.36 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584 (705)
Q Consensus 546 lE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~ 584 (705)
++.++..|.++|.+.......+..++..+..+++.+..+
T Consensus 1121 Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~ 1159 (1184)
T 1i84_S 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159 (1184)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444433
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.62 E-value=6.7e-08 Score=118.06 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005259 279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQ 358 (705)
Q Consensus 279 ~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~e 358 (705)
..|++.+.+++.....++..+.++......|+.++..++.+|..++..+...+.. +......+..|+.++..++.+
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~----l~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM----RVRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555666666666666665555544443331 122233444444444444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhh
Q 005259 359 AALSEGNLASLQMNMESIMRNREL 382 (705)
Q Consensus 359 l~~~K~rleele~E~~rl~e~l~~ 382 (705)
+...+..+.+++.++..+...+..
T Consensus 936 lee~ee~l~el~~e~~~le~el~~ 959 (1184)
T 1i84_S 936 IEEEEERSQQLQAEKKKMQQQMLD 959 (1184)
T ss_dssp HHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.31 E-value=0.066 Score=52.99 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=74.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259 299 LVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (705)
Q Consensus 299 l~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e 378 (705)
+.--++.+..+..++.+++.+|..-|+.=..++. +|+..|..++.....++.++..+..+.+.++.
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~--------------ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~ 77 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEA--------------ELEAQLVQAEQRNRDLQADNQRLKYEVEALKE 77 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666777777787775555555554 55556666666666666666666666666655
Q ss_pred HhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 379 NRELTETR---MIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKV 455 (705)
Q Consensus 379 ~l~~~eke---ilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQl 455 (705)
++.....+ .+++|+.+|..++.. +.....++.+||..|..|..+.-+..-.+..--.+...+=++.
T Consensus 78 K~~~~~~e~~~~~~~Lq~el~~l~~~-----------~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 78 KLEHQYAQSYKQVSVLEDDLSQTRAI-----------KEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55543111 255555555555432 3333446666666665555444333333333333333333444
Q ss_pred HhHHHHHH
Q 005259 456 AMLEVECA 463 (705)
Q Consensus 456 s~LE~elk 463 (705)
.+|+.+++
T Consensus 147 alLE~El~ 154 (189)
T 2v71_A 147 AFLESELD 154 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 7
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.21 E-value=0.099 Score=50.80 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005259 383 TETRMIQALREELASVERRAEEERAAHNATK---MAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLE 459 (705)
Q Consensus 383 ~ekeilqSLE~eLkslq~~le~E~~aH~aTk---~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE 459 (705)
+... +.+|+.++..+|..++.|+....... .+...|...|+.+...+-..+..+.-.-..-.-++..|++..+.++
T Consensus 60 L~~~-k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 60 LENS-KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344 55666667777777777766432222 2222333333333311111111111111111133455555556666
Q ss_pred ----HHHHHHHHHHHHHHHHH
Q 005259 460 ----VECATLQQELQDMEARL 476 (705)
Q Consensus 460 ----~elkqLkQeLq~lE~e~ 476 (705)
++++.+++.++.-...+
T Consensus 139 id~~~eLKalQ~~~eqE~~~H 159 (168)
T 3o0z_A 139 IDLNYKLKSLQQRLEQEVNEH 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665544443
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.80 E-value=0.34 Score=49.47 Aligned_cols=30 Identities=7% Similarity=0.142 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259 353 DALKKQAALSEGNLASLQMNMESIMRNREL 382 (705)
Q Consensus 353 ~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (705)
.++..++..++.++..++.+...+++.+..
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~ 122 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKR 122 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444333
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.71 E-value=0.28 Score=48.51 Aligned_cols=159 Identities=14% Similarity=0.183 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 005259 405 ERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT----AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (705)
Q Consensus 405 E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~----aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~q 480 (705)
|...++..-.+...+...++.+-.++.+.-.+++..++.+. .+...|..++..|..++..++.++.....+...
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~-- 88 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK-- 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34444444444455566666666555555555555444444 445677777777777777777666554443332
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHH
Q 005259 481 KKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYK 560 (705)
Q Consensus 481 ek~~~ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eK 560 (705)
++-.|+.|+..++...+.+..+|..+|..+..|....... ......++.+++...+..+-.
T Consensus 89 -----------~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~--------~~SleD~e~kln~aiEr~alL 149 (189)
T 2v71_A 89 -----------QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT--------IMSLEDFEQRLNQAIERNAFL 149 (189)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHH
Confidence 2345777787777777777777777887777777665331 222356777777776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 561 QTQLETMASEKAAAEFQLEKEMNRLQEV 588 (705)
Q Consensus 561 Q~qlE~L~~Er~sL~~qLE~~~~~~~~e 588 (705)
+..++ |+..|...++|+.--++.-
T Consensus 150 E~El~----EKe~l~~~~QRLkdE~rDL 173 (189)
T 2v71_A 150 ESELD----EKESLLVSVQRLKDEARDL 173 (189)
T ss_dssp HHHHH----HHHHHHCCC----------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 66555 5677766666655444443
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.56 E-value=0.057 Score=65.82 Aligned_cols=98 Identities=10% Similarity=0.194 Sum_probs=27.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005259 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRS----YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL 348 (705)
Q Consensus 273 qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~----L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~L 348 (705)
.|...+.+|+..+.++..++..+|..+..++++.+. +..++..|+.++..++...... ...++.+..|
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~--------~~~~~~v~~L 989 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA--------KNATNRVLSL 989 (1080)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 455567888888888888887777777777766543 3334555555444433321111 1223444445
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259 349 VSSIDALKKQAALSEGNLASLQMNMESIMR 378 (705)
Q Consensus 349 e~rl~~Le~el~~~K~rleele~E~~rl~e 378 (705)
+.++..+++++..+......+++...++++
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~~~~~~ 1019 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544444444444444444443
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.56 E-value=0.37 Score=49.16 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005259 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400 (705)
Q Consensus 340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~ 400 (705)
..+..+.++...+..++.++...+.++.+.+..+..+. ..++ +++|..+|..++.
T Consensus 50 ~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-----~~kE-~~aL~kEie~~~~ 104 (256)
T 3na7_A 50 NLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-----SERE-LRSLNIEEDIAKE 104 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SSSH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHH-HHHHHHHHHHHHH
Confidence 34444555555666666666666666665555543322 2333 5555555555543
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.18 E-value=0.16 Score=61.85 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=12.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 005259 450 ELEQKVAMLEVECATLQQELQDMEA 474 (705)
Q Consensus 450 eLeqQls~LE~elkqLkQeLq~lE~ 474 (705)
+|+.+++.|+.+...|++.+++++.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555553
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.94 E-value=1.6 Score=58.60 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 005259 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (705)
Q Consensus 431 seALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~q 480 (705)
...+...+.+|.+...++.+++.++..|..+++.+..+-+.++.+....+
T Consensus 2020 e~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A 2020 ENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555555555555555444444
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.90 E-value=2.8 Score=56.51 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572 (705)
Q Consensus 493 L~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~ 572 (705)
|..++.++.........++.+|..+++.++.|+.+.+.... ....++.++.....+|..-+.-+..|..|+.
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~--------ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIR--------ETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 33445555555555555566666667777777766643221 1356677778888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005259 573 AAEFQLEKEMNRLQEVQSE 591 (705)
Q Consensus 573 sL~~qLE~~~~~~~~e~~~ 591 (705)
-|..+.+.+..++..--+.
T Consensus 2088 RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2088 RWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHH
Confidence 9999999888877776553
No 15
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.63 E-value=1.3 Score=42.40 Aligned_cols=118 Identities=11% Similarity=0.121 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHR 426 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee 426 (705)
+|++.+..+..++...+.++..++....++.. +..+ +.....+++.++..+..|... +..+......++.+
T Consensus 17 ~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~----l~~~-~~~~~~e~~~L~~~l~~E~~~----R~~aE~~~~~ie~E 87 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKAAIENYNQLKEDYNT----LKRE-LSDRDDEVKRLREDIAKENEL----RTKAEEEADKLNKE 87 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH----HHTH-HHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-HhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 45555555555555555555554443332221 2223 344566677787777776554 55566677788888
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 427 AAEASMAL-ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (705)
Q Consensus 427 ~~eLseAL-aelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE 473 (705)
..+|+.+| .+..+.+..++.....++.+...|+..+..-...|..++
T Consensus 88 lEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq 135 (154)
T 2ocy_A 88 VEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLT 135 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887 445666666665555555555555444444444443333
No 16
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.05 E-value=1.1 Score=42.96 Aligned_cols=85 Identities=19% Similarity=0.277 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHH--HHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM--AAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE 570 (705)
Q Consensus 493 L~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~--~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~E 570 (705)
+..|..++...+.....++......+.|+..|...+ ++++ |..--.-....++.++..|..+|.++...++.+...
T Consensus 60 ~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~--MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~q 137 (154)
T 2ocy_A 60 VKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN--MVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQ 137 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666777777777877777765 1111 110001124678899999999999999999988887
Q ss_pred HHHHHHHHH
Q 005259 571 KAAAEFQLE 579 (705)
Q Consensus 571 r~sL~~qLE 579 (705)
...|..-++
T Consensus 138 l~~LK~v~~ 146 (154)
T 2ocy_A 138 LKNLKKVMH 146 (154)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHHH
Confidence 777665443
No 17
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=94.07 E-value=3.1 Score=38.90 Aligned_cols=127 Identities=20% Similarity=0.230 Sum_probs=75.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHH----HHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHH
Q 005259 455 VAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQA----WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 530 (705)
Q Consensus 455 ls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~----Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~ 530 (705)
+..|+.++++++.+++....++.-.-+-+.++...+-||+. -+.||..+|-.... .+..+++....+..
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~-------~QRn~~K~~~~Lkr 85 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGT-------AQRNLEKADQLLKR 85 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHh
Confidence 45566777777777777666666555444445444444433 24555554433332 22333333332222
Q ss_pred hhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005259 531 MKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAE 593 (705)
Q Consensus 531 ~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~~~~ 593 (705)
+..+ +.|-+.. =+.+++|--.|.+|-+.++.|..-.-.|+..||...-++.+.-..++
T Consensus 86 n~~q----QnQQSlD-iRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE 143 (167)
T 4gkw_A 86 NSQQ----QNQQSLD-MRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFE 143 (167)
T ss_dssp HHHH----HHHHHHH-HHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHH----HhHhhhh-HHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1222222 25679999999999999999999999999999987777666544443
No 18
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.06 E-value=4.4 Score=38.86 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005259 348 LVSSIDALKKQAALSEGNLASLQMNMESIM 377 (705)
Q Consensus 348 Le~rl~~Le~el~~~K~rleele~E~~rl~ 377 (705)
+++.+..++..+.....++..++.+++.+-
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~ 55 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVT 55 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555554443
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.93 E-value=3.8 Score=37.71 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005259 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361 (705)
Q Consensus 282 rk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~ 361 (705)
.+.+..++.....-|....++.+....|...+..|+..|..++..+...+..+. + .......|+..+..++..+..
T Consensus 19 ~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~-~---L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 19 KEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD-Q---LIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-H---HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444455556777778888888888888887776665332 3 444445666777777777777
Q ss_pred HHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 362 SEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 362 ~K~rleele~E~~rl~e~l~~~eke 386 (705)
.......+....+.+.+.+.++.+.
T Consensus 95 eee~~~~L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 95 EEEMNAELTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666666555
No 20
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.90 E-value=4.7 Score=38.66 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005259 295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM 371 (705)
Q Consensus 295 LEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es---~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~ 371 (705)
+|.-|.+-.++......++..|+.+|...-..+..++- .+..+...-...|..|..++..++..+......+.+++.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555556666666666666555555552 233333333444444444444444444444444444444
Q ss_pred HHHHHHHHh
Q 005259 372 NMESIMRNR 380 (705)
Q Consensus 372 E~~rl~e~l 380 (705)
+++++-+.+
T Consensus 106 ~id~lEd~L 114 (155)
T 2efr_A 106 SIDDLEDEL 114 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 21
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.07 E-value=5 Score=36.53 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (705)
Q Consensus 251 kQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~ 322 (705)
+.|-..+..|+.|++. .+.++.....+..+.+..|+..+..+++....|...|..|+.....
T Consensus 6 rdL~~~~~~L~~E~e~----------~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDD 67 (111)
T 2v66_B 6 RDLQADNQRLKYEVEA----------LKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 67 (111)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 4566667777777775 6777777777777777777777777777777777777777766544
No 22
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.00 E-value=5.5 Score=36.67 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 415 AAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (705)
Q Consensus 415 ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE 473 (705)
++..+...|.....+|..-+..++..+++.-.....|...-.-++.++..++..|++++
T Consensus 66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666667777777777666666666666667777777777776655
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.45 E-value=0.7 Score=51.56 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005259 345 IETLVSSIDALKKQAALSEGNLASLQMNMES 375 (705)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~r 375 (705)
+..+...+..++++.......+...+.+++.
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~ 488 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDT 488 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334444444444444444444444444333
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.27 E-value=3 Score=46.43 Aligned_cols=21 Identities=5% Similarity=-0.171 Sum_probs=7.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHh
Q 005259 360 ALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 360 ~~~K~rleele~E~~rl~e~l 380 (705)
+..+.+.+..+.++.+..+..
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHhh
Confidence 333333333333333333333
No 25
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=91.82 E-value=2.4 Score=38.66 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=49.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005259 274 LARVCAGLSSRLQEYKSENAQLEELLVAEREL----SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349 (705)
Q Consensus 274 La~~~~RLrk~~~elks~~aqLEell~el~e~----~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le 349 (705)
|+....+|++.+.........||+.+.+-.+- ...|..++..-|+.|...|..+.+.++ +.+
T Consensus 11 lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~--------------~vq 76 (112)
T 1x79_B 11 LQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR--------------DVQ 76 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence 34444555555555555556666655544443 456666778888888888888888877 344
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005259 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (705)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~ 381 (705)
..|..|...-+....++..++.+++.|..++.
T Consensus 77 ~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~~ 108 (112)
T 1x79_B 77 EQMAVLMQSREQVSEELVRLQKDNDSLQGKHS 108 (112)
T ss_dssp HHHHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Confidence 45555666666777777788888877766543
No 26
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.95 E-value=1.1 Score=42.02 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHH
Q 005259 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNRELTETRM 387 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl-~~Le~el~~~K~rleele~E~~rl~e~l~~~ekei 387 (705)
....+..|..+|..++..+...+. .....+.++++|-..+ ..++..+...+..-..++.-++.+...+.+.+..
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~----~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~l- 118 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEE----EADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDML- 118 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 334566666666666666555554 3334566677776665 6667777776666667777777777777776555
Q ss_pred HHHHHHHHHHHHH
Q 005259 388 IQALREELASVER 400 (705)
Q Consensus 388 lqSLE~eLkslq~ 400 (705)
+.+++..|..|+.
T Consensus 119 l~~lq~QL~~LK~ 131 (135)
T 2e7s_A 119 LDTLTLQLKNLKK 131 (135)
T ss_dssp C------------
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665554
No 27
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=89.68 E-value=13 Score=34.72 Aligned_cols=46 Identities=13% Similarity=0.220 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (705)
Q Consensus 428 ~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE 473 (705)
..|.+.+-.+.+.|+.++.++.+.---+..|.++-+.++++|..+.
T Consensus 115 e~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 115 ESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 3455666778888888888777766667777888888888886543
No 28
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.69 E-value=1.3 Score=41.68 Aligned_cols=108 Identities=14% Similarity=0.195 Sum_probs=64.3
Q ss_pred chHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005259 268 QSKEARLARVCAGLSSRLQEYKSENAQLEEL---LVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSE 344 (705)
Q Consensus 268 ~~ke~qLa~~~~RLrk~~~elks~~aqLEel---l~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~e 344 (705)
..+..++..++..+.....++..-...+..+ +.+.+.+....+..+..++.+|...-.+++..-+.|... ..-+
T Consensus 21 ~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~---ar~~ 97 (135)
T 2e7s_A 21 KAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVAD---ARME 97 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH---TTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 4455556655555555444444333333333 333334566667788899999999999998888877744 4666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (705)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e 378 (705)
...++.+...|+..+......++.++.++..|+.
T Consensus 98 ~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 98 KYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888888887766654
No 29
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.08 E-value=14 Score=32.78 Aligned_cols=15 Identities=33% Similarity=0.415 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 005259 458 LEVECATLQQELQDM 472 (705)
Q Consensus 458 LE~elkqLkQeLq~l 472 (705)
.|.+...|..+++.+
T Consensus 84 aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 84 AESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 30
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.07 E-value=14 Score=32.89 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Q 005259 389 QALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALA-RIQRIADERTAKAGELEQKVAML 458 (705)
Q Consensus 389 qSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALa-elQrkLeEe~aea~eLeqQls~L 458 (705)
...+.++..|+..+..|... +..+......++.+...|+.+|- +..+++..++.....++.+...|
T Consensus 22 ~~~~~e~~~L~~~l~eE~~~----R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L 88 (97)
T 2eqb_B 22 SDRDDEVKRLREDIAKENEL----RTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRL 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566777777666554 44555577777888888887773 34555555554444444444333
No 31
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=87.84 E-value=16 Score=33.27 Aligned_cols=29 Identities=7% Similarity=0.067 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005259 346 ETLVSSIDALKKQAALSEGNLASLQMNME 374 (705)
Q Consensus 346 e~Le~rl~~Le~el~~~K~rleele~E~~ 374 (705)
..|+.++..+...-..++..+-+++..++
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~ND 66 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQAND 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 33333333333333444444444444333
No 32
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=87.18 E-value=8.6 Score=35.01 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHH
Q 005259 516 SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYK 560 (705)
Q Consensus 516 s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eK 560 (705)
+.|.++..||+.+.... -...+|+.++..|+++|.-.
T Consensus 66 ~~E~di~~lrK~lD~~~--------l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNAS--------LARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666663211 11356777777777776654
No 33
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=85.38 E-value=10 Score=35.94 Aligned_cols=8 Identities=25% Similarity=0.318 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 005259 313 IKQLEQEL 320 (705)
Q Consensus 313 l~~LQaeL 320 (705)
+..|+.+|
T Consensus 54 ~~~lE~qL 61 (147)
T 2b9c_A 54 MEIQEIQL 61 (147)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 34
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.64 E-value=11 Score=36.04 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (705)
+.+.+..|+.++...+..+.+++..+. .|+..++.|.+++.+|+-++..+..++.+++.|++.|-++.=.
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~----eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIA----LKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777666666665333 4677888899999999999999999999999998777666544
No 35
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.52 E-value=17 Score=30.82 Aligned_cols=30 Identities=7% Similarity=0.120 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 351 SIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 351 rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
+...++.++.....+...++.++..++.++
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKi 50 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKL 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 36
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.47 E-value=23 Score=32.39 Aligned_cols=7 Identities=29% Similarity=0.126 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 005259 401 RAEEERA 407 (705)
Q Consensus 401 ~le~E~~ 407 (705)
+|+.|+.
T Consensus 114 ~Ld~EIa 120 (129)
T 3tnu_B 114 ALDVEIA 120 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 37
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.41 E-value=23 Score=31.14 Aligned_cols=28 Identities=7% Similarity=0.028 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259 351 SIDALKKQAALSEGNLASLQMNMESIMR 378 (705)
Q Consensus 351 rl~~Le~el~~~K~rleele~E~~rl~e 378 (705)
.+..|..+......+.+.++..++.+-+
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~ 37 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAED 37 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444333333
No 38
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.26 E-value=26 Score=32.06 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005259 388 IQALREELASVERRAEEERAAH 409 (705)
Q Consensus 388 lqSLE~eLkslq~~le~E~~aH 409 (705)
+..|+.+|..++..++.....|
T Consensus 84 i~~lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 84 LAELEEALQKAKQDMARLLREY 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 4455555555555555544444
No 39
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.98 E-value=28 Score=32.54 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=9.1
Q ss_pred HHHHHHHhhhhHHHHHHH
Q 005259 272 ARLARVCAGLSSRLQEYK 289 (705)
Q Consensus 272 ~qLa~~~~RLrk~~~elk 289 (705)
.-|..++.-+.++..+++
T Consensus 28 e~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555554
No 40
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.97 E-value=25 Score=31.25 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259 310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNREL 382 (705)
Q Consensus 310 ~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl-~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (705)
...+..|..+|..++..+...+. .....+.++++|-..| ..++..+...+..-..++.-+++|...+.+
T Consensus 25 ~~e~~~L~~~l~eE~~~R~~aE~----~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 25 DDEVKRLREDIAKENELRTKAEE----EADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555554444443 2334555555665554 555555555555555555555555544443
No 41
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.89 E-value=23 Score=32.55 Aligned_cols=9 Identities=44% Similarity=0.475 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 005259 400 RRAEEERAA 408 (705)
Q Consensus 400 ~~le~E~~a 408 (705)
-+|+.|+..
T Consensus 115 l~Ld~EIat 123 (131)
T 3tnu_A 115 TRLEQEIAT 123 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 42
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.58 E-value=24 Score=32.34 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005259 388 IQALREELASVERRAEEERAAH 409 (705)
Q Consensus 388 lqSLE~eLkslq~~le~E~~aH 409 (705)
+..|+.+|..++..++.....|
T Consensus 86 i~~lE~eL~~~r~em~~ql~EY 107 (131)
T 3tnu_A 86 IGSVEEQLAQLRCEMEQQNQEY 107 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555554444443
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.58 E-value=14 Score=34.51 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASV 398 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLksl 398 (705)
.|+..+..+..++..+|..+..++...+.+..++..+.++ +..|+.++..+
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~-~~~l~~~~~~l 129 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSE-INKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333 33344334433
No 44
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=81.22 E-value=21 Score=32.56 Aligned_cols=77 Identities=12% Similarity=0.119 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (705)
Q Consensus 306 ~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (705)
...|+..+.+|..+|..+...+..++....+.-+.=..+++.|...++..+..+..+......++.+...-+..+..
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~ 84 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777778888777777777766655555666777777777777777777777777666664444444333
No 45
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=80.63 E-value=35 Score=32.26 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=23.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHH
Q 005259 512 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL 557 (705)
Q Consensus 512 ~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L 557 (705)
.++..++.++..+-..+..+.-+... .++....|+.+|+.|+++|
T Consensus 101 ~k~~eLEeeL~~~~~nlKsLE~~eek-as~rE~~yee~I~~L~~kL 145 (147)
T 2b9c_A 101 GKCAELEEELKTVTNNLKSLEDKVEE-LLSKNYHLENEVARLKKLV 145 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHH-HHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444333322211 2455678888888887655
No 46
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=80.56 E-value=19 Score=30.35 Aligned_cols=47 Identities=6% Similarity=0.120 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
..+....+|++++..++..+...+.+-..+..+..++++-+.-+-.+
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~e 57 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFE 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34445556777777777777777777777777777776665555444
No 47
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=80.52 E-value=20 Score=31.36 Aligned_cols=65 Identities=14% Similarity=0.092 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 515 SSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (705)
Q Consensus 515 ~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (705)
..+|.+...|..+|....++- ++.....|+.-|..|+.++..-...-..+..|+..|...++++.
T Consensus 26 R~LEqqN~~Le~~i~~l~~~~---~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 26 RFLEQQNKILLAELEQLKGQG---KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666665544321 23345667888887776666555555555555555555544433
No 48
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=80.07 E-value=30 Score=30.23 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (705)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (705)
..+|.+|...+..+..+-..+...+..++.+...++.+
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666666666666666666655555443
No 49
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.79 E-value=14 Score=35.36 Aligned_cols=47 Identities=13% Similarity=0.240 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 590 (705)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~ 590 (705)
+.++.+|..|.+.|.+|...++.+..|..+|.+++..++.+++.-+.
T Consensus 78 ~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 78 KSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999999999999999999999998877766554
No 50
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=79.68 E-value=19 Score=31.09 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
+++|......|.++...++..-+.+..++.++++++..-..+
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444555555544444444
No 51
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.71 E-value=47 Score=35.89 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005259 315 QLEQELSVYKSEVTKVE 331 (705)
Q Consensus 315 ~LQaeL~~EQ~~l~q~e 331 (705)
-||+.|.+.|..+.+.+
T Consensus 401 ~~~~~~~~~~~~~~~~~ 417 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVE 417 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHH
Confidence 34444444444444444
No 52
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.78 E-value=64 Score=36.40 Aligned_cols=35 Identities=6% Similarity=0.081 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 540 REEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (705)
Q Consensus 540 ~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (705)
+..-..||.|+..- +.. ..+-.|..-+.+-||+.-
T Consensus 212 D~Vp~~fKsq~q~~-------~~e-~kal~ei~Qm~mvLE~~g 246 (562)
T 3ghg_A 212 DLVPGNFKSQLQKV-------PPE-WKALTDMPQMRMELERPG 246 (562)
T ss_dssp -------------------------------------------
T ss_pred ccCchhhhhhcccc-------CHH-HHHhhhhhcEEEEEEecC
Confidence 33456666666321 111 223467777888888863
No 53
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.14 E-value=25 Score=30.26 Aligned_cols=69 Identities=10% Similarity=0.164 Sum_probs=41.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (705)
Q Consensus 510 l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~ 586 (705)
|+.||...=+.+.-|+.++..+|..- ..+.....+++..-..+....+.|..|.++|.-+|..+..+++
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN--------~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKN--------NSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444555555553333211 3333444555555555778888888899999998888887654
No 54
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.54 E-value=39 Score=30.98 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 005259 346 ETLVSSIDALKKQAALSEGNLA 367 (705)
Q Consensus 346 e~Le~rl~~Le~el~~~K~rle 367 (705)
++|+++|..|++++......++
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333333
No 55
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=74.93 E-value=2.6 Score=47.93 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=9.4
Q ss_pred hhhHHHHHhhhhHH
Q 005259 8 AEDLFEVVDRRAKL 21 (705)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (705)
+.+||+.|-++-.|
T Consensus 26 ~~ell~~V~~~LgL 39 (575)
T 2i1j_A 26 GKQLFDQVVKTIGL 39 (575)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC
Confidence 56777777666554
No 56
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=74.76 E-value=27 Score=29.89 Aligned_cols=46 Identities=4% Similarity=0.042 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
.+....+|+.++..++..+...+.+-..+..+..++++-+.-+-.+
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~e 63 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444456666777777777777766666667766666655554444
No 57
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=74.58 E-value=98 Score=34.45 Aligned_cols=37 Identities=8% Similarity=0.176 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ 318 (705)
Q Consensus 282 rk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQa 318 (705)
++.+++|+..+.+|+..-....+....|+..+...|.
T Consensus 99 ~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~ 135 (464)
T 1m1j_B 99 KPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQK 135 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccc
Confidence 3344444444444444333333333333333333333
No 58
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=72.53 E-value=55 Score=35.33 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=9.0
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q 005259 510 AENKLSSLEAEVQKMRVEM 528 (705)
Q Consensus 510 l~~kl~s~E~elqkLr~e~ 528 (705)
++..+..++.+++.++.++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 448 LEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555544
No 59
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=72.18 E-value=44 Score=28.19 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005259 313 IKQLEQELSVYKSEVTKVE 331 (705)
Q Consensus 313 l~~LQaeL~~EQ~~l~q~e 331 (705)
+..|..++....+.+.+.+
T Consensus 8 m~~lk~e~d~a~~~~~~~e 26 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAE 26 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334433333333333
No 60
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=68.27 E-value=13 Score=32.14 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHH
Q 005259 516 SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLY 558 (705)
Q Consensus 516 s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~ 558 (705)
+.|.++..||+.+.... -.-.+|+.++-.|+++|.
T Consensus 46 ~~E~d~~~LrkdvD~a~--------l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 46 EAENTLQSFRQDVDNAS--------LARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHTTHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 46667777777663211 123778888888888875
No 61
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=66.74 E-value=1.3e+02 Score=33.72 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 308 SYEARIKQLEQELSVYKSEVTKVESNLAEA 337 (705)
Q Consensus 308 ~L~~rl~~LQaeL~~EQ~~l~q~es~~~ea 337 (705)
.++.+|..-|++|++.|.+-...+..+...
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye~~ 35 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYEAA 35 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666665555555544433
No 62
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.95 E-value=77 Score=28.64 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 383 TETRMIQALREELASVERRAEEERA 407 (705)
Q Consensus 383 ~ekeilqSLE~eLkslq~~le~E~~ 407 (705)
++.+ +++|..+|.-++.-.+.|..
T Consensus 88 LE~~-iesL~eEl~FLKk~heeEl~ 111 (119)
T 3ol1_A 88 LERK-VESLQEEIAFLKKLHEEEIQ 111 (119)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4555 66666666666666555544
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=65.50 E-value=92 Score=33.70 Aligned_cols=43 Identities=5% Similarity=-0.080 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (705)
Q Consensus 344 eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke 386 (705)
....++..+..+.++.+.....+..+.+++.++...+......
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 3334555555566666666666666666666666666555444
No 64
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=64.37 E-value=6.9 Score=44.53 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005259 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392 (705)
Q Consensus 346 e~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE 392 (705)
..|+..+..++.+...+..+..++++++.+|.......+.+ ...|+
T Consensus 366 ~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e-~~~l~ 411 (575)
T 2i1j_A 366 LRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAE-RQKLE 411 (575)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHH
Confidence 36667777777777777777777777777776665555444 33343
No 65
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=64.10 E-value=50 Score=30.28 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 582 (705)
Q Consensus 543 ~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 582 (705)
...|+.||..|--+|.+..........|..-|+.+++.+.
T Consensus 42 v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999998888754
No 66
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=62.83 E-value=1.8e+02 Score=33.13 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 267 GQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAE----RELSRSYEARIKQLEQELSVYKSEVTKVES 332 (705)
Q Consensus 267 l~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el----~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es 332 (705)
|..++.++++..+|=..+. .+...|++..+.+ ...-+.++.++.+|...+..++..+-+.++
T Consensus 482 l~~~~k~~~~~~~~~e~~~----~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~ 547 (592)
T 1f5n_A 482 LTEKEKEIEVERVKAESAQ----ASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQE 547 (592)
T ss_dssp SCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666555533332 2233333322222 223455555666666666555554444333
No 67
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=62.71 E-value=1.1e+02 Score=29.18 Aligned_cols=103 Identities=13% Similarity=0.129 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh-
Q 005259 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV---SSIDALKKQAALSEGNLASLQMNMESIMRNREL- 382 (705)
Q Consensus 307 ~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le---~rl~~Le~el~~~K~rleele~E~~rl~e~l~~- 382 (705)
+.|.+|+....+-...-|..+.++..+|..++.....-+..++ +.+..++..+..+..++..++..+..|.=.-=.
T Consensus 23 ~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Y 102 (158)
T 3tul_A 23 SQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGY 102 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 4444555555544444444444554566666655555555555 444455555555555544444433322211111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 383 -TETRMIQALREELASVERRAEEERAAH 409 (705)
Q Consensus 383 -~ekeilqSLE~eLkslq~~le~E~~aH 409 (705)
.+....+-++.++.++++.++.=..+|
T Consensus 103 ak~~a~~~q~~~d~~~~~~~~~kA~~A~ 130 (158)
T 3tul_A 103 AQAEAAVEQAGKEATEAKEALDKATDAT 130 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446666667777776665544433
No 68
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=62.36 E-value=60 Score=27.81 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le 403 (705)
...-+++++.+...|+..+..++.+++..+.+-.+++.++...... +..+=++|..+++++.
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~-Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL-LDVSLFELSELREGLA 72 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666655555544443 5555566666666654
No 69
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=61.78 E-value=43 Score=29.62 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 306 SRSYEARIKQLEQELSVYKSEVTKVES 332 (705)
Q Consensus 306 ~~~L~~rl~~LQaeL~~EQ~~l~q~es 332 (705)
...|...+.--..++..||.++.++.+
T Consensus 42 i~vLk~Qv~IY~~DF~aERadREkl~~ 68 (94)
T 3jsv_C 42 VPVLKAQADIYKADFQAERHAREKLVE 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555555555544
No 70
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=61.29 E-value=79 Score=27.15 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 005259 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (705)
Q Consensus 419 Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~q 480 (705)
|...||........++..++..+++-..++..|+.+++.+..++.+++++..++=.++.+..
T Consensus 7 rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl 68 (83)
T 2xdj_A 7 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLS 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333456778888888888888889999988888888888877766655555433
No 71
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=60.18 E-value=77 Score=26.68 Aligned_cols=60 Identities=13% Similarity=0.064 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005259 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (705)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le 403 (705)
..+++++.+...|+..+..++.+++..+.+-.+++.++...-.. +..+=++|..+++++.
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~-Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI-LDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666655555444333 5555566666666654
No 72
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=59.60 E-value=90 Score=27.29 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l 402 (705)
.|+.....+..++..++.....+..+-.+.+...+...-+ +.....++.|+.+.+
T Consensus 29 ~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q-l~e~~dE~~Sl~~q~ 83 (96)
T 3q8t_A 29 DVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ-QLELDDELKSVENQM 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444443333 333333344444443
No 73
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=58.29 E-value=34 Score=30.39 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=41.7
Q ss_pred hhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005259 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSE 326 (705)
Q Consensus 248 ~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~ 326 (705)
+.|..|...-..|..+|+. +..-|+.....+.+++..||.. +...+.|.++-.-|+.+|..-...
T Consensus 29 QVQqELs~tfarLc~~Vd~----------t~~eL~~EI~~L~~eI~~LE~i----qs~aK~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDM----------TQKHLEEEIARLSKEIDQLEKM----QNNSKLLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp ------CCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777764 5666666777777777777763 445777788888888888765443
No 74
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=57.46 E-value=1.2e+02 Score=27.88 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 351 SIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 351 rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
++..|+.++..++.+|.++.++++++....
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445555555555555555544444433
No 75
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=56.88 E-value=37 Score=28.92 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005259 320 LSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (705)
Q Consensus 320 L~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~r 375 (705)
|-..+.++.-.+..+..+..-...+...|..++.++.+-..+++.++.++++++++
T Consensus 21 Ll~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 21 LLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444555554444444555556666666666666666666666666666554
No 76
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=56.82 E-value=90 Score=26.79 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (705)
+|...+..++.++..++..+++..-++..++++
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444455555555555555555554444443
No 77
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.70 E-value=99 Score=26.61 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=8.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 005259 358 QAALSEGNLASLQMNMESIMR 378 (705)
Q Consensus 358 el~~~K~rleele~E~~rl~e 378 (705)
++...+.+-.++..+++++..
T Consensus 46 kL~eae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 78
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=55.02 E-value=1e+02 Score=28.17 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259 313 IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (705)
Q Consensus 313 l~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~ 382 (705)
|..|..++.+++.++..+..+.. ..+..|.+++..|+.++...+....++..+++.|...+..
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q-------~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQ-------RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555443222 3345677777777777777777767777777666655554
No 79
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=55.00 E-value=1e+02 Score=33.72 Aligned_cols=45 Identities=11% Similarity=0.046 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (705)
Q Consensus 428 ~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~l 472 (705)
+.++..|...++.+...+.+++.+.++++.+-.+...+.+.++..
T Consensus 23 C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 23 CGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888888888888888888877777887777776
No 80
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=52.43 E-value=1.2e+02 Score=26.58 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 421 VELEHRAAEASMALARIQRIADERT 445 (705)
Q Consensus 421 ~eLEee~~eLseALaelQrkLeEe~ 445 (705)
..|+.+++.-..-+.+++.++++..
T Consensus 35 ~~l~~e~~~R~~~i~el~akidd~L 59 (101)
T 1d7m_A 35 ASLESEGAEREKRLRELEAKLDETL 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555544
No 81
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=52.32 E-value=1.1e+02 Score=25.97 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 286 QEYKSENAQLEELLVAEREL----SRSYEARIKQLEQELSVYKSEVTKVESNLA 335 (705)
Q Consensus 286 ~elks~~aqLEell~el~e~----~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ 335 (705)
+.+++.++.||..+.+.... ...++..+..|+.+|...+.+....-.+|.
T Consensus 4 ~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq 57 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQ 57 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554443332 333444555666666655555544444444
No 82
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=51.22 E-value=1.6e+02 Score=27.51 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=14.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005259 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSY 309 (705)
Q Consensus 278 ~~RLrk~~~elks~~aqLEell~el~e~~~~L 309 (705)
..++.....++.+.+..|+..+..++.+.+.+
T Consensus 45 ~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~ 76 (155)
T 2oto_A 45 AGRDFKRAEELEKAKQALEDQRKDLETKLKEL 76 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555444444333333
No 83
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=51.04 E-value=1.4e+02 Score=27.00 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=4.1
Q ss_pred HHHHHhhhhHH
Q 005259 274 LARVCAGLSSR 284 (705)
Q Consensus 274 La~~~~RLrk~ 284 (705)
+..++++|..+
T Consensus 26 i~~L~~~L~~A 36 (110)
T 2v4h_A 26 LEDLRQQLQQA 36 (110)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 84
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=50.61 E-value=1.4e+02 Score=26.70 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 348 Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
|..+|..-..++..++..++..+.+...+...+
T Consensus 59 lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~ 91 (107)
T 2no2_A 59 LKQELATSQRELQVLQGSLETSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444433333
No 85
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=49.93 E-value=1.8e+02 Score=32.95 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhHhhhcchhHHHHH
Q 005259 649 ATRFLWRYPIARIIL 663 (705)
Q Consensus 649 ~g~fLRRyP~ARl~v 663 (705)
+.-|.+|+|-.=-||
T Consensus 487 ld~~~~rhpd~~~ff 501 (562)
T 3ghg_A 487 LDGFRHRHPDEAAFF 501 (562)
T ss_dssp ---------------
T ss_pred hhhhhhhCcchHhhc
Confidence 556778888754443
No 86
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=47.39 E-value=70 Score=26.04 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=34.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259 279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (705)
Q Consensus 279 ~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ 324 (705)
.-+++++..+..++++|=..+..+++-.+.|+..+..||.+-...+
T Consensus 16 levK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 16 LELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3467788888888888888777777777777777777777765543
No 87
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.22 E-value=1.4e+02 Score=25.88 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 005259 309 YEARIKQLEQEL 320 (705)
Q Consensus 309 L~~rl~~LQaeL 320 (705)
+..++..++..+
T Consensus 29 l~~~i~~l~~~l 40 (112)
T 1l8d_A 29 LKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 88
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=46.52 E-value=1.4e+02 Score=25.56 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 307 RSYEARIKQLEQELSVYKSEVTKVESNLA 335 (705)
Q Consensus 307 ~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ 335 (705)
..+......|+.++...+......+.+|.
T Consensus 10 ~~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 10 DQLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555544444444333
No 89
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=46.30 E-value=1.4e+02 Score=25.51 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005259 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQ 370 (705)
Q Consensus 340 ak~~eie~Le~rl~~Le~el~~~K~rleele 370 (705)
+.+..|..|+.+-..++..+..++.+.+++.
T Consensus 43 KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555443
No 90
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=46.29 E-value=1.5e+02 Score=25.78 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 005259 309 YEARIKQLEQELSVYK 324 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ 324 (705)
|...+..++.++...+
T Consensus 22 L~~~~~~l~~~i~~l~ 37 (112)
T 1l8d_A 22 ITQRIGELKNKIGDLK 37 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444333333
No 91
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=45.67 E-value=63 Score=26.12 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
+...+..|+.+...|+.+...++.+++.++.|+..|.+-+
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888888888888888888888888877766543
No 92
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=45.64 E-value=2.2e+02 Score=31.07 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005259 282 SSRLQEYKSENAQLEELLVAERELSR 307 (705)
Q Consensus 282 rk~~~elks~~aqLEell~el~e~~~ 307 (705)
-+....+.+.+..||..++++..+..
T Consensus 30 ~k~e~~V~~~l~~LE~~l~elsn~ts 55 (409)
T 1m1j_C 30 NKYRLTTDGELLEIEGLLQQATNSTG 55 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 34444455556666665555544443
No 93
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=44.60 E-value=1.4e+02 Score=25.69 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=25.5
Q ss_pred HHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259 255 EAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (705)
Q Consensus 255 e~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL 320 (705)
+++--|.+|+-+ +.-+.+.+...+..+-.++..|++-..++..|..++..|+.++
T Consensus 14 eLQSALeaEIqA-----------KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 14 ELQEALEEEVLT-----------RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555553 4444445544555555555444443334444444444443333
No 94
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=44.46 E-value=1.8e+02 Score=28.87 Aligned_cols=56 Identities=7% Similarity=0.050 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE 405 (705)
Q Consensus 350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E 405 (705)
.+...++.....+...++++...+..+-..+=.+--..++++...|+.+++++..+
T Consensus 146 ~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~ 201 (213)
T 1ik9_A 146 KENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNA 201 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444445555556666666666666666666666666777778888888777554
No 95
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.29 E-value=3.4e+02 Score=29.45 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=15.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhH
Q 005259 360 ALSEGNLASLQMNMESIMRNRELT 383 (705)
Q Consensus 360 ~~~K~rleele~E~~rl~e~l~~~ 383 (705)
..++.++++|.+.+..+.+...+.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~ 86 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDS 86 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHH
Confidence 555666777777766666666653
No 96
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=43.86 E-value=1.4e+02 Score=25.53 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 312 RIKQLEQELSVYKSEVTKVESNLA 335 (705)
Q Consensus 312 rl~~LQaeL~~EQ~~l~q~es~~~ 335 (705)
.|..++.+|...+.+....-.+|.
T Consensus 36 ~i~~lE~el~~~r~e~~~ql~EYq 59 (86)
T 1x8y_A 36 LLAEKEREMAEMRARMQQQLDEYQ 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333333
No 97
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=43.27 E-value=1.4e+02 Score=24.53 Aligned_cols=45 Identities=9% Similarity=0.119 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587 (705)
Q Consensus 543 ~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~ 587 (705)
+.-|..++.+|+.....-...+.....|...|..+++.+...+++
T Consensus 30 E~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 30 EEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888777777777888888888888888877766554
No 98
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=42.33 E-value=2e+02 Score=26.10 Aligned_cols=82 Identities=12% Similarity=0.172 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331 (705)
Q Consensus 252 QLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~e 331 (705)
+++.++..|.+--++|..|..++.+++..+.. ....| +....|...+.--..++..|+.++.++.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q-------~~~~l--------E~I~vLkaQv~IY~~DF~aERadREkl~ 89 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ-------HKIVM--------ETVPVLKAQADIYKADFQAERHAREKLV 89 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH--------THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH--------HHHHHHHHHHHHHHHHHccchhhHHHHH
Confidence 56666666666555555555544444432222 11111 2244444444445555555555555554
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005259 332 SNLAEALAAKNSEIETLVSSIDALKKQA 359 (705)
Q Consensus 332 s~~~ealsak~~eie~Le~rl~~Le~el 359 (705)
++ ++.|+..+..|+.++
T Consensus 90 ~e-----------Ke~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 90 EK-----------KEYLQEQLEQLQREF 106 (110)
T ss_dssp HH-----------HHHHHHHHHHHHHHH
T ss_pred hH-----------HHHHHHHHHHHHHHH
Confidence 42 335555555555544
No 99
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=42.17 E-value=1.7e+02 Score=32.82 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259 311 ARIKQLEQELSVYKSEVTKVESNLAEALAAKN-------SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (705)
Q Consensus 311 ~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~-------~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e 378 (705)
.+...++.++...|..+......+......++ ...+.|..+...+..+++.++..+.++++++..+.-
T Consensus 77 ~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 77 QELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554443211111 244455555555555555555555555555554443
No 100
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.62 E-value=3.6e+02 Score=28.95 Aligned_cols=13 Identities=8% Similarity=-0.064 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 005259 436 RIQRIADERTAKA 448 (705)
Q Consensus 436 elQrkLeEe~aea 448 (705)
++...+.++.+++
T Consensus 460 ~~~~~~~~~~~~~ 472 (487)
T 3oja_A 460 EADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhhHhcccHH
Confidence 3333333333333
No 101
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=41.49 E-value=1.8e+02 Score=25.48 Aligned_cols=54 Identities=22% Similarity=0.280 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005259 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~ 373 (705)
|.+++..||..|..++-++.++-. . ..+|+.-+..+..+...-..++.+++.-.
T Consensus 2 lan~La~le~sLe~EK~S~eeL~k--------Q---k~eL~~~l~~l~~e~~~R~~~i~el~aki 55 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIK--------Q---KDQLNSLLASLESEGAEREKRLRELEAKL 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHH--------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777666543333222 1 12344444445455544444444444433
No 102
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=40.74 E-value=3.3e+02 Score=29.85 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005259 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQE 319 (705)
Q Consensus 281 Lrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQae 319 (705)
|-+.....+..+..||..|+...........-+..++.-
T Consensus 29 L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~ 67 (411)
T 3ghg_C 29 LSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLT 67 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 444455555566666666665555555444444444433
No 103
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=40.57 E-value=1.5e+02 Score=25.95 Aligned_cols=22 Identities=9% Similarity=-0.222 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 005259 343 SEIETLVSSIDALKKQAALSEG 364 (705)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~ 364 (705)
+.+..|+.....|+..+..++.
T Consensus 12 ~~~~~Lq~~~~~LE~~l~e~E~ 33 (95)
T 3mov_A 12 NLYFQGQKESRACLERIQELED 33 (95)
T ss_dssp ------CCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 104
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.43 E-value=68 Score=27.04 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005259 342 NSEIETLVSSIDALKKQAALSEGNLAS 368 (705)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rlee 368 (705)
+..|..|+.+|...+.++..++..+.+
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555544444443
No 105
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=39.74 E-value=1.1e+02 Score=26.74 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005259 309 YEARIKQLEQELSVYKSEVTKV 330 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~ 330 (705)
++..+..|+.+|...+.+....
T Consensus 42 ~q~~i~~lE~eL~~~r~e~~~q 63 (95)
T 3mov_A 42 SRRMLTDKEREMAEIRDQMQQQ 63 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444443
No 106
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.34 E-value=83 Score=24.99 Aligned_cols=39 Identities=8% Similarity=0.145 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (705)
+...+..|+.+...+..+...++..+..+..++..|..-
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888888888888888888777776654
No 107
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=38.45 E-value=1.6e+02 Score=25.09 Aligned_cols=16 Identities=6% Similarity=0.111 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHhhhhh
Q 005259 251 DQLDEAQGLLKTTIST 266 (705)
Q Consensus 251 kQLee~n~~LrsE~ea 266 (705)
..+-|.....++|.++
T Consensus 14 rrl~E~~~q~qaEl~s 29 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNA 29 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHH
Confidence 3444555555555555
No 108
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=38.08 E-value=52 Score=27.86 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005259 279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (705)
Q Consensus 279 ~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~ 325 (705)
..|..++.++..+++-+|+.+.++++....-+..|..|+..|.....
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777776666666666555556655555544433
No 109
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=37.33 E-value=4.3e+02 Score=28.65 Aligned_cols=39 Identities=5% Similarity=0.123 Sum_probs=19.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005259 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREEL 395 (705)
Q Consensus 356 e~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eL 395 (705)
++.+.-+|.++..--..++.|+-.+.+.-.+ |+-||..|
T Consensus 119 e~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~k-iqRLE~~I 157 (390)
T 1deq_A 119 RSRIEILRRKVIEQVQRINLLQKNVRDQLVD-MKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3334444444444444555555555555444 55555554
No 110
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=35.89 E-value=1e+02 Score=23.43 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (705)
Q Consensus 345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e 378 (705)
+.+|+.+...++....+++.+++-++.|+.-|-+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4577777777777888888888888888766544
No 111
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=35.61 E-value=5.2e+02 Score=29.04 Aligned_cols=80 Identities=15% Similarity=0.279 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMERE 420 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re 420 (705)
-.+++..|+..+.++..=++....++.++..-+.+=-..++.-|..|+...+..+.+|+...+.|+.. +..+|....
T Consensus 144 e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr~k~~aL~~aIe~Er~~---~~EEAIqe~ 220 (526)
T 3iyk_A 144 DEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDG---MQEEAIQEI 220 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHH
Confidence 34677788888888888888888888888877777667777779999999999999999998887664 444444443
Q ss_pred HHH
Q 005259 421 VEL 423 (705)
Q Consensus 421 ~eL 423 (705)
.++
T Consensus 221 ~dm 223 (526)
T 3iyk_A 221 AGM 223 (526)
T ss_pred hcc
Confidence 333
No 112
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.07 E-value=1.2e+02 Score=25.55 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005259 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (705)
Q Consensus 340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E~~r 375 (705)
.+..+|......+..++.++......+.+++.+++.
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 113
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=33.21 E-value=2.4e+02 Score=24.40 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005259 347 TLVSSIDALKKQAALSEGNLASLQMNME 374 (705)
Q Consensus 347 ~Le~rl~~Le~el~~~K~rleele~E~~ 374 (705)
.|..++..++.+++.+..++..++.++.
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~ 101 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLK 101 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 114
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.75 E-value=1.6e+02 Score=23.42 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (705)
+...+.+|+.++..|..+...++..+..+..++..|...
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888888888888888888888887666543
No 115
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=32.47 E-value=2.7e+02 Score=24.80 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=21.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005259 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (705)
Q Consensus 337 alsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~ 377 (705)
.|..+..++..|...+..+...-..+..++..++.+++.+.
T Consensus 62 eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 62 ELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555443
No 116
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=32.47 E-value=2.6e+02 Score=24.59 Aligned_cols=27 Identities=7% Similarity=0.166 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 305 LSRSYEARIKQLEQELSVYKSEVTKVE 331 (705)
Q Consensus 305 ~~~~L~~rl~~LQaeL~~EQ~~l~q~e 331 (705)
+.+.|+.+|..|+.++.++..++.-+.
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~ 42 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALK 42 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888877766655444
No 117
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=32.04 E-value=1.9e+02 Score=22.85 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586 (705)
Q Consensus 546 lE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~ 586 (705)
|..++..|+.++.+.+..+..+..+..+-.-.-.|++.|+|
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455566666666666666666666666666666666665
No 118
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.81 E-value=1.4e+02 Score=23.90 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
+...+.+|+.+...|+.+-..++..+..++.+...|..-+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777777777777777766665543
No 119
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.77 E-value=1.6e+02 Score=32.91 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (705)
|..+...++.++...|..+......+... .+.....+.|..+...+..+++.++..+.++++++..+.-.
T Consensus 38 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~-k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~ 107 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLNSVQKEIGKR-FKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQ 107 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666666666555432 11222344566666666666666666666666666555544
No 120
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=31.41 E-value=2.5e+02 Score=24.12 Aligned_cols=57 Identities=32% Similarity=0.363 Sum_probs=32.9
Q ss_pred HHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005259 292 NAQLEELLV---AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (705)
Q Consensus 292 ~aqLEell~---el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl 352 (705)
....|.++. .++-+...|+++..+-+..|...++++..++. +|..++.+|.-|..++
T Consensus 18 ~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~----qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 18 QRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQE----QVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHhhHHHHHHHHHHH
Confidence 344445444 34445676777777777777776666665554 4445556666555443
No 121
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=30.97 E-value=2.7e+02 Score=24.27 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=12.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHcc
Q 005259 456 AMLEVECATLQQELQDMEARLKRGQ 480 (705)
Q Consensus 456 s~LE~elkqLkQeLq~lE~e~~r~q 480 (705)
-.+..+..++.-.+.+...++.+++
T Consensus 70 ~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 70 LELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444455555555555555554
No 122
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=30.91 E-value=2.5e+02 Score=23.88 Aligned_cols=11 Identities=18% Similarity=-0.043 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 005259 399 ERRAEEERAAH 409 (705)
Q Consensus 399 q~~le~E~~aH 409 (705)
+-+++.|+..|
T Consensus 65 K~~Le~EIatY 75 (86)
T 1x8y_A 65 KLALDMEIHAY 75 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhhHHHHHHH
Confidence 33344444333
No 123
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=30.77 E-value=1.5e+02 Score=32.14 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005259 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~ 377 (705)
|..+...++.++...|..+......+.. +.....+.|..+...+..+++.++..+.++++++..+.
T Consensus 33 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTERNQVAKRVPK---APPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSS---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555666655555655554442 22233445555555555555555555555555554443
No 124
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.18 E-value=1.7e+02 Score=32.25 Aligned_cols=71 Identities=11% Similarity=0.229 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
|..+...++.++...|..+......+... .+.....+.|..+...+..+++.++..+.++++++..+.-.+
T Consensus 36 l~~~~r~~~~~~~~l~~~~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHERNKIAVEIGKR-RKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455556666666666666666555432 122233445555666666666666666666666655554443
No 125
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=30.03 E-value=83 Score=29.21 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=21.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 300 VAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (705)
Q Consensus 300 ~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~ 379 (705)
..++++|+.+..++..++.++...+.. ..-......-+.++|+..+..=.......|.+++.++.--..|-++
T Consensus 26 ~~Leek~~~~e~~~~~~~~Elee~kqq-------~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~Lfqe 98 (130)
T 3cl3_D 26 QALEGRARAASEQARQLESEREALQQQ-------HSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQE 98 (130)
T ss_dssp -------------------------CT-------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566776666666666666442111 1111111222333444444433334444556666666555555555
Q ss_pred hhh
Q 005259 380 REL 382 (705)
Q Consensus 380 l~~ 382 (705)
.+.
T Consensus 99 Yd~ 101 (130)
T 3cl3_D 99 YDN 101 (130)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 126
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.99 E-value=2e+02 Score=25.81 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005259 344 EIETLVSSIDALKKQAALSEGNLASLQMNM 373 (705)
Q Consensus 344 eie~Le~rl~~Le~el~~~K~rleele~E~ 373 (705)
.|++|+.++..-+.+|.....++.+++...
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~ 65 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAV 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666677777777777777766666653
No 127
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=28.40 E-value=1.5e+02 Score=22.32 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 005259 517 LEAEVQKMRVE 527 (705)
Q Consensus 517 ~E~elqkLr~e 527 (705)
+|..+..|+..
T Consensus 32 lekklaalksk 42 (48)
T 1g6u_A 32 LEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 128
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=28.13 E-value=1.1e+02 Score=31.69 Aligned_cols=20 Identities=10% Similarity=0.327 Sum_probs=7.4
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 005259 356 KKQAALSEGNLASLQMNMES 375 (705)
Q Consensus 356 e~el~~~K~rleele~E~~r 375 (705)
+.++...+.++..++.+++.
T Consensus 128 ~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 128 KAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 129
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=28.06 E-value=1.2e+02 Score=23.14 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259 298 LLVAERELSRSYEARIKQLEQELSVYK 324 (705)
Q Consensus 298 ll~el~e~~~~L~~rl~~LQaeL~~EQ 324 (705)
+..+++++...|+.|+..|+.-|...+
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 130
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=26.69 E-value=7.4e+02 Score=28.07 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259 414 MAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (705)
Q Consensus 414 ~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeL 469 (705)
.+++.....++.+.-+.-.+|++.++.+.++..+...++++...|+.-.+.+.+.+
T Consensus 462 ~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~ 517 (592)
T 1f5n_A 462 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMM 517 (592)
T ss_dssp HHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444456778888888888888888777777765444444433
No 131
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.43 E-value=2.6e+02 Score=24.83 Aligned_cols=65 Identities=32% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--cccCChH----------------HHHHHHHHHHHHHHHHHHHhhhH
Q 005259 447 KAGELEQKVAMLEVECATLQQELQDMEARLKR--GQKKSPE----------------EANQAIQMQAWQDEVERARQGQR 508 (705)
Q Consensus 447 ea~eLeqQls~LE~elkqLkQeLq~lE~e~~r--~qek~~~----------------ea~q~~qL~~Lk~EL~~~rq~qr 508 (705)
.+..+++++..|+.+...|+++++.++.++.+ ++-.... .......+..|+.|+..+|...+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 005259 509 DAE 511 (705)
Q Consensus 509 ~l~ 511 (705)
.++
T Consensus 93 ~lE 95 (100)
T 1go4_E 93 AME 95 (100)
T ss_dssp TCC
T ss_pred HHh
No 132
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.28 E-value=98 Score=30.52 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=26.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005259 355 LKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (705)
Q Consensus 355 Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l 402 (705)
+++++...-.-+++++.|+..|.+.+..+..+ +.+|+.+|.++++..
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~e-i~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATE-IKQLQKQIDSLNAQV 57 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh
Confidence 44455555566667777777777777777777 666666666666655
No 133
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=26.17 E-value=1.3e+02 Score=27.93 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005259 352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397 (705)
Q Consensus 352 l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLks 397 (705)
+.+|-.++.+...++++++.+..+++++.-.++.. +..++.++..
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~-~~~~~~Elee 48 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQ-ARQLESEREA 48 (130)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHH
Confidence 34566677888888888888888887776666555 4444444433
No 134
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=25.82 E-value=4.6e+02 Score=26.24 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=15.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005259 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (705)
Q Consensus 337 alsak~~eie~Le~rl~~Le~el~~~K~rle 367 (705)
+..+-...+..|+.|+...+.++.-++.++.
T Consensus 99 RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~ 129 (242)
T 3c9i_A 99 RITANTKAITALNVRVTTAEGEIASLQTNVS 129 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhhhheeecccccchhhhhhhh
Confidence 3334444555555555555555555444443
No 135
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.93 E-value=2.3e+02 Score=22.19 Aligned_cols=8 Identities=38% Similarity=0.563 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 005259 290 SENAQLEE 297 (705)
Q Consensus 290 s~~aqLEe 297 (705)
.+|..|.+
T Consensus 23 ~rN~rL~~ 30 (51)
T 3m91_A 23 ARNSKLME 30 (51)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 136
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=24.71 E-value=51 Score=24.26 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 005259 665 FYLVFVHLFLMYLLHR 680 (705)
Q Consensus 665 vYmvlLHLWVm~VL~~ 680 (705)
+|+.+|-++|+.|||+
T Consensus 17 Ly~GLLlifvlavlFs 32 (37)
T 3arc_L 17 LYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5888888999999985
No 137
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=24.59 E-value=3.8e+02 Score=23.90 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 549 RYRELTDLLYYKQTQLETMASEKAAA 574 (705)
Q Consensus 549 rl~eLtE~L~eKQ~qlE~L~~Er~sL 574 (705)
+|++|-.++...-+.-+.|..|...|
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444444333
No 138
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=24.16 E-value=7.9e+02 Score=27.52 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005259 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349 (705)
Q Consensus 306 ~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le 349 (705)
+..++.++.+.|++-...+.++..--.++.....+.+++.+.+.
T Consensus 11 la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaik 54 (497)
T 3iox_A 11 LTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIK 54 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33333344444444444444443333333333333333333333
No 139
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.07 E-value=72 Score=32.79 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588 (705)
Q Consensus 547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e 588 (705)
+.++++|..++...+.+.+.|..+...+..+|+++...++.-
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678889999999999999999999999998888877655554
No 140
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=23.01 E-value=1.8e+02 Score=20.46 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=10.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Q 005259 379 NRELTETRMIQALREELASVERR 401 (705)
Q Consensus 379 ~l~~~ekeilqSLE~eLkslq~~ 401 (705)
++..+-++ +.+|.+++..++++
T Consensus 10 eiaalkke-iaalkfeiaalkqg 31 (33)
T 4dzn_A 10 EIAALKKE-IAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHcc
Confidence 33333444 55555555555554
No 141
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.48 E-value=3.8e+02 Score=25.92 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005259 342 NSEIETLVSSIDALKKQAALSEGNLA 367 (705)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rle 367 (705)
+.++..|+.....++..+..++.+..
T Consensus 62 ~~~~~~Le~~~~~L~~~i~~l~~~~~ 87 (174)
T 2p22_A 62 RAVEQAIEQTMHSLNAQIDVLTANRA 87 (174)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444333
No 142
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.41 E-value=3.1e+02 Score=24.25 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHH
Q 005259 341 KNSEIETLVSSI---DALKKQAALSEGNLASLQMNMESI 376 (705)
Q Consensus 341 k~~eie~Le~rl---~~Le~el~~~K~rleele~E~~rl 376 (705)
++++|..|..++ +.++..++.++.+.--++.+++..
T Consensus 52 L~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 52 LEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444444444332 333344555555555555555444
No 143
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=22.40 E-value=3.7e+02 Score=23.07 Aligned_cols=34 Identities=15% Similarity=0.019 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577 (705)
Q Consensus 544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~q 577 (705)
..||.++..-.++|...|.+++.=.+|..-|.-+
T Consensus 43 lQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 43 NQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455555555566666665555555555444443
No 144
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=22.28 E-value=3.5e+02 Score=23.59 Aligned_cols=73 Identities=14% Similarity=0.242 Sum_probs=46.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005259 276 RVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (705)
Q Consensus 276 ~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~L 355 (705)
++..+.+++++.++..+..+|..+.-+..-.. + . .......+...-..|. .|.+++..+
T Consensus 12 ~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~-~-----T----pq~L~~~l~~~h~~Fi-----------aLAa~l~~l 70 (93)
T 3t98_B 12 VLVQQFEVQLQQYRQQIEELENHLATQANNSH-I-----T----PQDLSMAMQKIYQTFV-----------ALAAQLQSI 70 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTT-S-----C----HHHHHHHHHHHHHHHH-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-C-----C----HHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 46788999999999999999997665432100 0 0 0111222333444566 677777777
Q ss_pred HHHHHHHHhHHHHH
Q 005259 356 KKQAALSEGNLASL 369 (705)
Q Consensus 356 e~el~~~K~rleel 369 (705)
..+++.+|...-.+
T Consensus 71 H~~V~~~Ke~Yl~~ 84 (93)
T 3t98_B 71 HENVKVLKEQYLSY 84 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777765444
No 145
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=22.27 E-value=3.2e+02 Score=22.25 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=26.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259 336 EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (705)
Q Consensus 336 ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl 376 (705)
.+|++-++-|+.|..-...+..++..+...+.+++.|+-.|
T Consensus 20 ~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 20 KALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 45555566666666666666666777777777777766554
No 146
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=22.18 E-value=27 Score=30.51 Aligned_cols=16 Identities=19% Similarity=0.569 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 005259 661 IILLFYLVFVHLFLMY 676 (705)
Q Consensus 661 l~vlvYmvlLHLWVm~ 676 (705)
++|++.+++||+|-=|
T Consensus 69 l~FIa~VilLHI~gK~ 84 (87)
T 2ww9_C 69 VGFIFSVIALHLLTKF 84 (87)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhhhh
Confidence 5677778899998543
No 147
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=22.08 E-value=2.1e+02 Score=28.85 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589 (705)
Q Consensus 547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~ 589 (705)
-.|++.++.+|...+..++....|++|+..+|+....++-+.+
T Consensus 170 a~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 170 AFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999999999998776655543
No 148
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.98 E-value=2.7e+02 Score=21.26 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005259 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQE 319 (705)
Q Consensus 280 RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQae 319 (705)
-|++....+++-+-|||.--..+......|.+++..|+.+
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666652222222333444445555444
No 149
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=21.86 E-value=20 Score=31.87 Aligned_cols=14 Identities=7% Similarity=0.465 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHH
Q 005259 661 IILLFYLVFVHLFL 674 (705)
Q Consensus 661 l~vlvYmvlLHLWV 674 (705)
++|++.+++||+|.
T Consensus 78 l~Fi~~Vi~Lhi~~ 91 (96)
T 2wwb_C 78 LLFIASVFMLHIWG 91 (96)
T ss_dssp HHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhh
Confidence 56677778888874
No 150
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.31 E-value=2.2e+02 Score=30.71 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005259 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (705)
Q Consensus 344 eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~ 381 (705)
.|..|+.++..++++...++..+++++.+++.+.+.+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555444433
No 151
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.01 E-value=1.9e+02 Score=22.77 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (705)
Q Consensus 282 rk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~ 322 (705)
+.++.+++.++.+|-..+..+-+.++.-.++|..|..++..
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555543
No 152
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.98 E-value=4.9e+02 Score=25.62 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 005259 340 AKNSEIETLVSSIDALKKQAALSEGNL 366 (705)
Q Consensus 340 ak~~eie~Le~rl~~Le~el~~~K~rl 366 (705)
+++.+|+.|+.++.+++.+....+..+
T Consensus 38 ~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 38 TKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 344444444444444444444333333
No 153
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=20.51 E-value=4.6e+02 Score=23.43 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005259 319 ELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (705)
Q Consensus 319 eL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~ 377 (705)
+|..++.++.-.-..+...+.-++..+..+..+.....+++...|.....++.++..++
T Consensus 20 QLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 20 QLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333233222223333333333333333344444444444444443333
No 154
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.26 E-value=4.6e+02 Score=23.30 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259 352 IDALKKQAALSEGNLASLQMNMESIMRN 379 (705)
Q Consensus 352 l~~Le~el~~~K~rleele~E~~rl~e~ 379 (705)
+..+++++..++.+++.++.....+.+.
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~ 117 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDI 117 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333333
No 155
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=20.24 E-value=2.9e+02 Score=23.92 Aligned_cols=48 Identities=25% Similarity=0.259 Sum_probs=27.5
Q ss_pred hhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005259 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELL 299 (705)
Q Consensus 248 ~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell 299 (705)
..|.++++....||.++. |+=.+..=...|++.....++....++-.|
T Consensus 18 ~~q~~le~~r~~ir~eI~----KElKiKeGaENL~katt~~kk~~~~V~~eL 65 (86)
T 1cxz_B 18 GVQQQLELERERLRREIR----KELKLKEGAENLRRATTDLGRSLGPVELLL 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhHHHhHHHHHHHHHhHHHHHHHHHHHH
Confidence 345667777777777764 344455556666666666444444444433
Done!