Query 005259
Match_columns 705
No_of_seqs 169 out of 193
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 20:10:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005259.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005259hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 59.1 27 0.002 28.6 9.7 65 309-376 33-97 (110)
2 d1seta1 a.2.7.1 (A:1-110) Sery 55.5 22 0.0016 29.2 8.4 28 545-572 68-95 (110)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 39.4 98 0.0071 25.5 13.0 22 351-372 103-124 (133)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 30.5 1.3E+02 0.0093 24.2 12.9 39 342-380 64-102 (107)
5 d1ivsa1 a.2.7.3 (A:797-862) Va 28.3 1.1E+02 0.0078 22.6 7.9 47 356-402 3-62 (66)
6 d2ap3a1 a.24.27.1 (A:12-196) H 27.1 1.4E+02 0.01 23.7 15.3 15 451-465 149-163 (185)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 26.4 21 0.0016 23.0 2.5 22 662-683 6-27 (30)
8 d1fxka_ a.2.5.1 (A:) Prefoldin 24.7 1.6E+02 0.012 23.5 10.8 30 343-372 72-101 (107)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 23.6 26 0.0019 23.9 2.7 16 665-680 17-32 (37)
10 d1qvra2 c.37.1.20 (A:149-535) 19.7 3.2E+02 0.024 26.6 11.7 113 274-401 237-362 (387)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=59.13 E-value=27 Score=28.60 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (705)
Q Consensus 309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl 376 (705)
|..+...++.++...|..+......+.. .+.+....|..+...+..++..+...+..++.+...+
T Consensus 33 ld~~rr~l~~~~e~l~~~rN~~sk~i~k---~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 33 LDREVQELKKRLQEVQTERNQVAKRVPK---APPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGG---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666665554432 1334444555555555555555555555555554443
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=55.46 E-value=22 Score=29.18 Aligned_cols=28 Identities=14% Similarity=0.045 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259 545 ELEKRYRELTDLLYYKQTQLETMASEKA 572 (705)
Q Consensus 545 elE~rl~eLtE~L~eKQ~qlE~L~~Er~ 572 (705)
.+..++..|.+++...+..+..+..+.+
T Consensus 68 ~l~~~~k~lk~~i~~le~~~~~~~~~l~ 95 (110)
T d1seta1 68 ALIARGKALGEEAKRLEEALREKEARLE 95 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=39.39 E-value=98 Score=25.54 Aligned_cols=22 Identities=5% Similarity=0.086 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 005259 351 SIDALKKQAALSEGNLASLQMN 372 (705)
Q Consensus 351 rl~~Le~el~~~K~rleele~E 372 (705)
.+..+..++...+..+..++..
T Consensus 103 ~~~~l~~~~~~~~~~i~~l~~~ 124 (133)
T d1fxkc_ 103 TLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=30.45 E-value=1.3e+02 Score=24.20 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (705)
Q Consensus 342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l 380 (705)
.+.+.+|..++..++.+++.+...+..++.++..++.++
T Consensus 64 ~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666555555555444
No 5
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=28.30 E-value=1.1e+02 Score=22.65 Aligned_cols=47 Identities=15% Similarity=0.072 Sum_probs=28.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHHHHHHHHHH
Q 005259 356 KKQAALSEGNLASLQMNMESIMRNREL-------------TETRMIQALREELASVERRA 402 (705)
Q Consensus 356 e~el~~~K~rleele~E~~rl~e~l~~-------------~ekeilqSLE~eLkslq~~l 402 (705)
+.++.++...+++++.++.++...++. .++..+..+..++..++..+
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l 62 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777777777665 24444555555555555444
No 6
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=27.14 E-value=1.4e+02 Score=23.66 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=5.5
Q ss_pred HHHHHHhHHHHHHHH
Q 005259 451 LEQKVAMLEVECATL 465 (705)
Q Consensus 451 LeqQls~LE~elkqL 465 (705)
+..++..++..+..+
T Consensus 149 l~~~~~~l~~~~~~~ 163 (185)
T d2ap3a1 149 VNEKSKAIEQNYKKL 163 (185)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=26.42 E-value=21 Score=23.02 Aligned_cols=22 Identities=14% Similarity=0.449 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 005259 662 ILLFYLVFVHLFLMYLLHRLQE 683 (705)
Q Consensus 662 ~vlvYmvlLHLWVm~VL~~~~~ 683 (705)
.+++|.+++-|+.|.|+|+-.|
T Consensus 6 yv~ifac~i~lfffaiffrepp 27 (30)
T d2axtt1 6 YVFIFACIIALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCC
T ss_pred hHHHHHHHHHHHHHHHHhcCCC
Confidence 4667777788888888887655
No 8
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.74 E-value=1.6e+02 Score=23.52 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005259 343 SEIETLVSSIDALKKQAALSEGNLASLQMN 372 (705)
Q Consensus 343 ~eie~Le~rl~~Le~el~~~K~rleele~E 372 (705)
..++.|..++..++..+..+..++.+++..
T Consensus 72 ~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~ 101 (107)
T d1fxka_ 72 EKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.55 E-value=26 Score=23.92 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 005259 665 FYLVFVHLFLMYLLHR 680 (705)
Q Consensus 665 vYmvlLHLWVm~VL~~ 680 (705)
+|..+|-++|+.|||+
T Consensus 17 Ly~GlLlifvl~vLFs 32 (37)
T d2axtl1 17 LYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788888889888885
No 10
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=19.72 E-value=3.2e+02 Score=26.63 Aligned_cols=113 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 005259 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA--------RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEI 345 (705)
Q Consensus 274 La~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~--------rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~ei 345 (705)
|-..|++.+-.....-..+..++..+..+.-....|.. ++..++.++...+.....+.....
T Consensus 237 ld~a~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~---------- 306 (387)
T d1qvra2 237 IDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWE---------- 306 (387)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHH----------
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHH
Q 005259 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL-----TETRMIQALREELASVERR 401 (705)
Q Consensus 346 e~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~-----~ekeilqSLE~eLkslq~~ 401 (705)
....+-.++..++..++.+..+++.++..-+. +....+-.++.++..+...
T Consensus 307 -----~ek~~l~~i~~Lk~~Le~lr~~le~A~r~gd~e~AaeL~y~~ip~le~el~~l~~~ 362 (387)
T d1qvra2 307 -----REREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK 362 (387)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhchHHHHHHHHHHHHHH
Done!