BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005260
(705 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FEC|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Iii
(GcpiiiNAALADASE II), PSEUDO-Unliganded
pdb|3FED|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH A TRANSITION STATE ANALOG OF Glu-Glu
pdb|3FEE|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH QUISQUALIC ACID
pdb|3FF3|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH L-Glutamate
Length = 707
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 241/701 (34%), Positives = 382/701 (54%), Gaps = 66/701 (9%)
Query: 43 SISHHLHTLTRRPHVXXXXXXXXXXXYVLSVFTSCSLES-HIASYGVSLTYPVSRSLSLT 101
+I L + T+ PH+ + + + L+S + Y V L+YP + +
Sbjct: 26 NIKSFLRSFTKLPHLAGTEQNFLLAKKIQTQWKKFGLDSAKLVHYDVLLSYPNETNANYI 85
Query: 102 RPPPQPPITFALRQEIYEG-------DPYADVADEVLPTFHGYAKSGTVIGPVVYVNYGR 154
I EI++ D Y +V + ++P ++ ++ G G +VYVNY R
Sbjct: 86 S------IVDEHETEIFKTSYLEPPPDGYENVTN-IVPPYNAFSAQGMPEGDLVYVNYAR 138
Query: 155 VEDYVTL-KEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDA 213
ED+ L +EM +N TG +V+ARYG+IFRG+ V NA AGA G ++++D DY + +
Sbjct: 139 TEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYF--APEV 196
Query: 214 RWFPDDKWMPPSGVQVGSVYD--GTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLP 271
+ +P +P + Q G+V + G GDP TPG+P+ E RL +VE+ +P IP P
Sbjct: 197 QPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRL---DVEEGVGIPRIPVHP 253
Query: 272 ISAKDGETIMRSIGGEVA-NEDWQGDKDAPIYRVGPG-PGVVNLSYTGEYV-----MATI 324
I D E ++R +GG ++ W+G + Y +GPG G + +V + I
Sbjct: 254 IGYNDAEILLRYLGGIAPPDKSWKGALNVS-YSIGPGFTGSDSFRKVRMHVYNINKITRI 312
Query: 325 QNVIGIIPGTEEPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRT 384
NV+G I G+ EPDR VILG HRD+W FGA+DP SG A L E+A+ KL +GW+PRRT
Sbjct: 313 YNVVGTIRGSVEPDRYVILGGHRDSWVFGAIDPTSGVAVLQEIARSFGKLMSKGWRPRRT 372
Query: 385 IVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVH-EAGFHASATPQLDELLK 443
I+ +WDAEE+GL+GSTEW EEN ++L R++AY+N DS++ TP L +L+
Sbjct: 373 IIFASWDAEEFGLLGSTEWAEENVKILQERSIAYINSDSSIEGNYTLRVDCTPLLYQLVY 432
Query: 444 QAAKQVQDPDN--SSQTIYDSWT------GSSNSPVIGRLGGGGSDYAAFIQHIGVPVAD 495
+ K++ PD+ S+++Y+SW + N P I +L G GSD+ A+ Q +G+
Sbjct: 433 KLTKEIPSPDDGFESKSLYESWLEKDPSPENKNLPRINKL-GSGSDFEAYFQRLGIASGR 491
Query: 496 MSFG--------TGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLADEEFLP 547
+ + YPVYH++Y+ F +EKF DPTF++ ++ A + G + +L D + +P
Sbjct: 492 ARYTKNKKTDKYSSYPVYHTIYETFELVEKFYDPTFKKQLSVAQLRGALVYELVDSKIIP 551
Query: 548 FNYLSYAFELQKSTKDLEN-------EVSGKGISLIPLFKSIEELAKAAAKIDNEKKELQ 600
FN YA L+ + N +++ G+S LF +++ ++AA+ D K+ +Q
Sbjct: 552 FNIQDYAEALKNYAASIYNLSKKHDQQLTDHGVSFDSLFSAVKNFSEAAS--DFHKRLIQ 609
Query: 601 KAKGWASTWKKDQYKVRELNDRLMMAERAFTDRDGLSGRPWYKHLIYAPSKHNDYGSKYF 660
+ VR +ND+LM+ ERAF D GL G+ +Y+H+I+APS HN Y + F
Sbjct: 610 -------VDLNNPIAVRMMNDQLMLLERAFIDPLGLPGKLFYRHIIFAPSSHNKYAGESF 662
Query: 661 PAIDDAIEE-AMKLNTAKSWHTVQHEVWRVSRAVRHASLVL 700
P I DAI + K N+ +W V+ + + ++ A+ L
Sbjct: 663 PGIYDAIFDIENKANSRLAWKEVKKHISIAAFTIQAAAGTL 703
>pdb|2OOT|A Chain A, A High Resolution Structure Of Ligand-Free Human Glutamate
Carboxypeptidase Ii
pdb|2OR4|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii In Complex With Quisqualic Acid
pdb|2PVV|A Chain A, Structure Of Human Glutamate Carboxypeptidase Ii (Gcpii)
In Complex With L-Serine-O-Sulfate
pdb|2PVW|A Chain A, A High Resolution Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In Complex With
2-(Phosphonomethyl)pentanedioic Acid (2-Pmpa)
pdb|3BHX|A Chain A, X-ray Structure Of Human Glutamate Carboxypeptidase Ii
(gcpii) In Complex With A Transition State Analog Of
Asp-glu
pdb|3BI0|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Glu-Glu
pdb|3BI1|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Methotrexate-Glu
pdb|3D7D|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (gcpii) In A Complex With Dcfbd, A
Urea-based Inhibitor
pdb|3D7F|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcit, A
Urea-Based Inhibitor
pdb|3D7G|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcmc, A
Urea-Based Inhibitor
pdb|3D7H|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcibzl, A
Urea-Based Inhibitor
pdb|3IWW|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In A Complex With Dbibzl, A Urea-Based Inhibitor
pdb|2XEI|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P2
pdb|3SJF|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii In
Complex With A Urea-Based Inhibitor (A25)
Length = 709
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 239/711 (33%), Positives = 371/711 (52%), Gaps = 84/711 (11%)
Query: 43 SISHHLHTLTRRPHVXXXXXXXXXXXYVLSVFTSCSLES-HIASYGVSLTYPVSR----- 96
+I L+ T+ PH+ + S + L+S +A Y V L+YP
Sbjct: 28 NIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLSYPNKTHPNYI 87
Query: 97 -----------SLSLTRPPPQPPITFALRQEIYEGDPYADVADEVLPTFHGYAKSGTVIG 145
+ SL PPP Y +V+D ++P F ++ G G
Sbjct: 88 SIINEDGNEIFNTSLFEPPPPG---------------YENVSD-IVPPFSAFSPQGMPEG 131
Query: 146 PVVYVNYGRVEDYVTL-KEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRK 204
+VYVNY R ED+ L ++M +N +G +V+ARYG++FRG+ V NA AGA G ++++D
Sbjct: 132 DLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPA 191
Query: 205 DYGGGSDDARWFPDDKWMPPSGVQVGSVYD--GTGDPTTPGWPSSEGCERLSKEEVEKAG 262
DY + + +PD +P GVQ G++ + G GDP TPG+P++E R + +A
Sbjct: 192 DYF--APGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRG---IAEAV 246
Query: 263 NVPLIPSLPISAKDGETIMRSIGGEVA-NEDWQGDKDAPIYRVGPG-PGVVNLSYTGEYV 320
+P IP PI D + ++ +GG + W+G P Y VGPG G + ++
Sbjct: 247 GLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVP-YNVGPGFTGNFSTQKVKMHI 305
Query: 321 MAT-----IQNVIGIIPGTEEPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQ 375
+T I NVIG + G EPDR VILG HRD+W FG +DP SG A + E+ + L+
Sbjct: 306 HSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGTLK 365
Query: 376 KRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVH-EAGFHASA 434
K GW+PRRTI+ +WDAEE+GL+GSTEW EEN +L R VAY+N DS++
Sbjct: 366 KEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRVDC 425
Query: 435 TPQLDELLKQAAKQVQDPDN--SSQTIYDSWTGSSNS------PVIGRLGGGGSDYAAFI 486
TP + L+ K+++ PD +++Y+SWT S S P I +L G G+D+ F
Sbjct: 426 TPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKL-GSGNDFEVFF 484
Query: 487 QHIGVPVADMSFG--------TGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVAL 538
Q +G+ + +GYP+YHS+Y+ + +EKF DP F+ H+ A + G +
Sbjct: 485 QRLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVF 544
Query: 539 QLADEEFLPFNYLSYAFELQKSTKDL-------ENEVSGKGISLIPLFKSIEELAKAAAK 591
+LA+ LPF+ YA L+K + E+ +S LF +++ + A+K
Sbjct: 545 ELANSIVLPFDCRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASK 604
Query: 592 IDNEKKELQKAKGWASTWKKDQYKVRELNDRLMMAERAFTDRDGLSGRPWYKHLIYAPSK 651
++ K+ + +R +ND+LM ERAF D GL RP+Y+H+IYAPS
Sbjct: 605 FSERLQDFDKS---------NPIVLRMMNDQLMFLERAFIDPLGLPDRPFYRHVIYAPSS 655
Query: 652 HNDYGSKYFPAIDDAIEE-AMKLNTAKSWHTVQHEVWRVSRAVRHASLVLN 701
HN Y + FP I DA+ + K++ +K+W V+ +++ + V+ A+ L+
Sbjct: 656 HNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYVAAFTVQAAAETLS 706
>pdb|2C6C|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Gpi-18431
(S)-2-(4-Iodobenzylphosphonomethyl)- Pentanedioic Acid
pdb|2C6P|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Phosphate Anion
pdb|2JBJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With 2-Pmpa (2-Phosphonomethyl-Pentanedioic
Acid)
pdb|2JBK|A Chain A, Membrane-bound Glutamate Carboxypeptidase Ii (gcpii) In
Complex With Quisqualic Acid (quisqualate,
Alpha-amino-3,5- Dioxo-1,2,4-oxadiazolidine-2-propanoic
Acid)
pdb|2C6G|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Glutamate
pdb|2CIJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Methionine
Length = 707
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 239/711 (33%), Positives = 371/711 (52%), Gaps = 84/711 (11%)
Query: 43 SISHHLHTLTRRPHVXXXXXXXXXXXYVLSVFTSCSLES-HIASYGVSLTYPVSR----- 96
+I L+ T+ PH+ + S + L+S +A Y V L+YP
Sbjct: 26 NIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLSYPNKTHPNYI 85
Query: 97 -----------SLSLTRPPPQPPITFALRQEIYEGDPYADVADEVLPTFHGYAKSGTVIG 145
+ SL PPP Y +V+D ++P F ++ G G
Sbjct: 86 SIINEDGNEIFNTSLFEPPPPG---------------YENVSD-IVPPFSAFSPQGMPEG 129
Query: 146 PVVYVNYGRVEDYVTL-KEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRK 204
+VYVNY R ED+ L ++M +N +G +V+ARYG++FRG+ V NA AGA G ++++D
Sbjct: 130 DLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPA 189
Query: 205 DYGGGSDDARWFPDDKWMPPSGVQVGSVYD--GTGDPTTPGWPSSEGCERLSKEEVEKAG 262
DY + + +PD +P GVQ G++ + G GDP TPG+P++E R + +A
Sbjct: 190 DYF--APGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRG---IAEAV 244
Query: 263 NVPLIPSLPISAKDGETIMRSIGGEVA-NEDWQGDKDAPIYRVGPG-PGVVNLSYTGEYV 320
+P IP PI D + ++ +GG + W+G P Y VGPG G + ++
Sbjct: 245 GLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVP-YNVGPGFTGNFSTQKVKMHI 303
Query: 321 MAT-----IQNVIGIIPGTEEPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQ 375
+T I NVIG + G EPDR VILG HRD+W FG +DP SG A + E+ + L+
Sbjct: 304 HSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGTLK 363
Query: 376 KRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVH-EAGFHASA 434
K GW+PRRTI+ +WDAEE+GL+GSTEW EEN +L R VAY+N DS++
Sbjct: 364 KEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRVDC 423
Query: 435 TPQLDELLKQAAKQVQDPDN--SSQTIYDSWTGSSNS------PVIGRLGGGGSDYAAFI 486
TP + L+ K+++ PD +++Y+SWT S S P I +L G G+D+ F
Sbjct: 424 TPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKL-GSGNDFEVFF 482
Query: 487 QHIGVPVADMSFG--------TGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVAL 538
Q +G+ + +GYP+YHS+Y+ + +EKF DP F+ H+ A + G +
Sbjct: 483 QRLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVF 542
Query: 539 QLADEEFLPFNYLSYAFELQKSTKDL-------ENEVSGKGISLIPLFKSIEELAKAAAK 591
+LA+ LPF+ YA L+K + E+ +S LF +++ + A+K
Sbjct: 543 ELANSIVLPFDCRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASK 602
Query: 592 IDNEKKELQKAKGWASTWKKDQYKVRELNDRLMMAERAFTDRDGLSGRPWYKHLIYAPSK 651
++ K+ + +R +ND+LM ERAF D GL RP+Y+H+IYAPS
Sbjct: 603 FSERLQDFDKS---------NPIVLRMMNDQLMFLERAFIDPLGLPDRPFYRHVIYAPSS 653
Query: 652 HNDYGSKYFPAIDDAIEE-AMKLNTAKSWHTVQHEVWRVSRAVRHASLVLN 701
HN Y + FP I DA+ + K++ +K+W V+ +++ + V+ A+ L+
Sbjct: 654 HNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYVAAFTVQAAAETLS 704
>pdb|3RBU|A Chain A, N-Terminally Avitev-Tagged Human Glutamate
Carboxypeptidase Ii In Complex With 2-Pmpa
Length = 739
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 239/711 (33%), Positives = 371/711 (52%), Gaps = 84/711 (11%)
Query: 43 SISHHLHTLTRRPHVXXXXXXXXXXXYVLSVFTSCSLES-HIASYGVSLTYPVSR----- 96
+I L+ T+ PH+ + S + L+S +A Y V L+YP
Sbjct: 58 NIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLSYPNKTHPNYI 117
Query: 97 -----------SLSLTRPPPQPPITFALRQEIYEGDPYADVADEVLPTFHGYAKSGTVIG 145
+ SL PPP Y +V+D ++P F ++ G G
Sbjct: 118 SIINEDGNEIFNTSLFEPPPPG---------------YENVSD-IVPPFSAFSPQGMPEG 161
Query: 146 PVVYVNYGRVEDYVTL-KEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRK 204
+VYVNY R ED+ L ++M +N +G +V+ARYG++FRG+ V NA AGA G ++++D
Sbjct: 162 DLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPA 221
Query: 205 DYGGGSDDARWFPDDKWMPPSGVQVGSVYD--GTGDPTTPGWPSSEGCERLSKEEVEKAG 262
DY + + +PD +P GVQ G++ + G GDP TPG+P++E R + +A
Sbjct: 222 DYF--APGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRG---IAEAV 276
Query: 263 NVPLIPSLPISAKDGETIMRSIGGEVA-NEDWQGDKDAPIYRVGPG-PGVVNLSYTGEYV 320
+P IP PI D + ++ +GG + W+G P Y VGPG G + ++
Sbjct: 277 GLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVP-YNVGPGFTGNFSTQKVKMHI 335
Query: 321 MAT-----IQNVIGIIPGTEEPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQ 375
+T I NVIG + G EPDR VILG HRD+W FG +DP SG A + E+ + L+
Sbjct: 336 HSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGTLK 395
Query: 376 KRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVH-EAGFHASA 434
K GW+PRRTI+ +WDAEE+GL+GSTEW EEN +L R VAY+N DS++
Sbjct: 396 KEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRVDC 455
Query: 435 TPQLDELLKQAAKQVQDPDN--SSQTIYDSWTGSSNS------PVIGRLGGGGSDYAAFI 486
TP + L+ K+++ PD +++Y+SWT S S P I +L G G+D+ F
Sbjct: 456 TPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKL-GSGNDFEVFF 514
Query: 487 QHIGVPVADMSFG--------TGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVAL 538
Q +G+ + +GYP+YHS+Y+ + +EKF DP F+ H+ A + G +
Sbjct: 515 QRLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVF 574
Query: 539 QLADEEFLPFNYLSYAFELQKSTKDL-------ENEVSGKGISLIPLFKSIEELAKAAAK 591
+LA+ LPF+ YA L+K + E+ +S LF +++ + A+K
Sbjct: 575 ELANSIVLPFDCRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASK 634
Query: 592 IDNEKKELQKAKGWASTWKKDQYKVRELNDRLMMAERAFTDRDGLSGRPWYKHLIYAPSK 651
++ K+ + +R +ND+LM ERAF D GL RP+Y+H+IYAPS
Sbjct: 635 FSERLQDFDKS---------NPIVLRMMNDQLMFLERAFIDPLGLPDRPFYRHVIYAPSS 685
Query: 652 HNDYGSKYFPAIDDAIEE-AMKLNTAKSWHTVQHEVWRVSRAVRHASLVLN 701
HN Y + FP I DA+ + K++ +K+W V+ +++ + V+ A+ L+
Sbjct: 686 HNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYVAAFTVQAAAETLS 736
>pdb|1Z8L|A Chain A, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|B Chain B, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|C Chain C, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|D Chain D, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
Length = 695
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 239/711 (33%), Positives = 371/711 (52%), Gaps = 84/711 (11%)
Query: 43 SISHHLHTLTRRPHVXXXXXXXXXXXYVLSVFTSCSLES-HIASYGVSLTYPVSR----- 96
+I L+ T+ PH+ + S + L+S +A Y V L+YP
Sbjct: 14 NIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLSYPNKTHPNYI 73
Query: 97 -----------SLSLTRPPPQPPITFALRQEIYEGDPYADVADEVLPTFHGYAKSGTVIG 145
+ SL PPP Y +V+D ++P F ++ G G
Sbjct: 74 SIINEDGNEIFNTSLFEPPPPG---------------YENVSD-IVPPFSAFSPQGMPEG 117
Query: 146 PVVYVNYGRVEDYVTL-KEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRK 204
+VYVNY R ED+ L ++M +N +G +V+ARYG++FRG+ V NA AGA G ++++D
Sbjct: 118 DLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPA 177
Query: 205 DYGGGSDDARWFPDDKWMPPSGVQVGSVYD--GTGDPTTPGWPSSEGCERLSKEEVEKAG 262
DY + + +PD +P GVQ G++ + G GDP TPG+P++E R + +A
Sbjct: 178 DYF--APGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRG---IAEAV 232
Query: 263 NVPLIPSLPISAKDGETIMRSIGGEVA-NEDWQGDKDAPIYRVGPG-PGVVNLSYTGEYV 320
+P IP PI D + ++ +GG + W+G P Y VGPG G + ++
Sbjct: 233 GLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVP-YNVGPGFTGNFSTQKVKMHI 291
Query: 321 MAT-----IQNVIGIIPGTEEPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQ 375
+T I NVIG + G EPDR VILG HRD+W FG +DP SG A + E+ + L+
Sbjct: 292 HSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGTLK 351
Query: 376 KRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVH-EAGFHASA 434
K GW+PRRTI+ +WDAEE+GL+GSTEW EEN +L R VAY+N DS++
Sbjct: 352 KEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRVDC 411
Query: 435 TPQLDELLKQAAKQVQDPDN--SSQTIYDSWTGSSNS------PVIGRLGGGGSDYAAFI 486
TP + L+ K+++ PD +++Y+SWT S S P I +L G G+D+ F
Sbjct: 412 TPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKL-GSGNDFEVFF 470
Query: 487 QHIGVPVADMSFG--------TGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVAL 538
Q +G+ + +GYP+YHS+Y+ + +EKF DP F+ H+ A + G +
Sbjct: 471 QRLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVF 530
Query: 539 QLADEEFLPFNYLSYAFELQKSTKDL-------ENEVSGKGISLIPLFKSIEELAKAAAK 591
+LA+ LPF+ YA L+K + E+ +S LF +++ + A+K
Sbjct: 531 ELANSIVLPFDCRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASK 590
Query: 592 IDNEKKELQKAKGWASTWKKDQYKVRELNDRLMMAERAFTDRDGLSGRPWYKHLIYAPSK 651
++ K+ + +R +ND+LM ERAF D GL RP+Y+H+IYAPS
Sbjct: 591 FSERLQDFDKS---------NPIVLRMMNDQLMFLERAFIDPLGLPDRPFYRHVIYAPSS 641
Query: 652 HNDYGSKYFPAIDDAIEE-AMKLNTAKSWHTVQHEVWRVSRAVRHASLVLN 701
HN Y + FP I DA+ + K++ +K+W V+ +++ + V+ A+ L+
Sbjct: 642 HNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYVAAFTVQAAAETLS 692
>pdb|3BXM|A Chain A, Structure Of An Inactive Mutant Of Human Glutamate
Carboxypeptidase Ii [gcpii(E424a)] In Complex With
N-Acetyl-Asp-Glu (Naag)
pdb|3SJE|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Aminononanoic Acid
pdb|3SJG|A Chain A, Human Glutamate Carboxypeptidase Ii (E424a Inactive Mutant
) In Complex With N-Acetyl-Aspartyl-Aminooctanoic Acid
pdb|3SJX|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Methionine
Length = 709
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 238/711 (33%), Positives = 370/711 (52%), Gaps = 84/711 (11%)
Query: 43 SISHHLHTLTRRPHVXXXXXXXXXXXYVLSVFTSCSLES-HIASYGVSLTYPVSR----- 96
+I L+ T+ PH+ + S + L+S +A Y V L+YP
Sbjct: 28 NIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLSYPNKTHPNYI 87
Query: 97 -----------SLSLTRPPPQPPITFALRQEIYEGDPYADVADEVLPTFHGYAKSGTVIG 145
+ SL PPP Y +V+D ++P F ++ G G
Sbjct: 88 SIINEDGNEIFNTSLFEPPPPG---------------YENVSD-IVPPFSAFSPQGMPEG 131
Query: 146 PVVYVNYGRVEDYVTL-KEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRK 204
+VYVNY R ED+ L ++M +N +G +V+ARYG++FRG+ V NA AGA G ++++D
Sbjct: 132 DLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPA 191
Query: 205 DYGGGSDDARWFPDDKWMPPSGVQVGSVYD--GTGDPTTPGWPSSEGCERLSKEEVEKAG 262
DY + + +PD +P GVQ G++ + G GDP TPG+P++E R + +A
Sbjct: 192 DYF--APGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRG---IAEAV 246
Query: 263 NVPLIPSLPISAKDGETIMRSIGGEVA-NEDWQGDKDAPIYRVGPG-PGVVNLSYTGEYV 320
+P IP PI D + ++ +GG + W+G P Y VGPG G + ++
Sbjct: 247 GLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVP-YNVGPGFTGNFSTQKVKMHI 305
Query: 321 MAT-----IQNVIGIIPGTEEPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQ 375
+T I NVIG + G EPDR VILG HRD+W FG +DP SG A + E+ + L+
Sbjct: 306 HSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGTLK 365
Query: 376 KRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVH-EAGFHASA 434
K GW+PRRTI+ +WDA E+GL+GSTEW EEN +L R VAY+N DS++
Sbjct: 366 KEGWRPRRTILFASWDAAEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRVDC 425
Query: 435 TPQLDELLKQAAKQVQDPDN--SSQTIYDSWTGSSNS------PVIGRLGGGGSDYAAFI 486
TP + L+ K+++ PD +++Y+SWT S S P I +L G G+D+ F
Sbjct: 426 TPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKL-GSGNDFEVFF 484
Query: 487 QHIGVPVADMSFG--------TGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVAL 538
Q +G+ + +GYP+YHS+Y+ + +EKF DP F+ H+ A + G +
Sbjct: 485 QRLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVF 544
Query: 539 QLADEEFLPFNYLSYAFELQKSTKDL-------ENEVSGKGISLIPLFKSIEELAKAAAK 591
+LA+ LPF+ YA L+K + E+ +S LF +++ + A+K
Sbjct: 545 ELANSIVLPFDCRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASK 604
Query: 592 IDNEKKELQKAKGWASTWKKDQYKVRELNDRLMMAERAFTDRDGLSGRPWYKHLIYAPSK 651
++ K+ + +R +ND+LM ERAF D GL RP+Y+H+IYAPS
Sbjct: 605 FSERLQDFDKS---------NPIVLRMMNDQLMFLERAFIDPLGLPDRPFYRHVIYAPSS 655
Query: 652 HNDYGSKYFPAIDDAIEE-AMKLNTAKSWHTVQHEVWRVSRAVRHASLVLN 701
HN Y + FP I DA+ + K++ +K+W V+ +++ + V+ A+ L+
Sbjct: 656 HNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYVAAFTVQAAAETLS 706
>pdb|2XEF|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P8
pdb|2XEG|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P4
pdb|2XEJ|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Arm-M4, Urea-Based Inhibitor
Length = 709
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 238/711 (33%), Positives = 370/711 (52%), Gaps = 84/711 (11%)
Query: 43 SISHHLHTLTRRPHVXXXXXXXXXXXYVLSVFTSCSLES-HIASYGVSLTYPVSR----- 96
+I L+ T+ PH+ + S + L+S +A Y V L+YP
Sbjct: 28 NIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLSYPNKTHPNYI 87
Query: 97 -----------SLSLTRPPPQPPITFALRQEIYEGDPYADVADEVLPTFHGYAKSGTVIG 145
+ SL PPP Y +V+D ++P F ++ G G
Sbjct: 88 SIINEDGNEIFNTSLFEPPPPG---------------YENVSD-IVPPFSAFSPQGMPEG 131
Query: 146 PVVYVNYGRVEDYVTL-KEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRK 204
+VYVNY R ED+ L ++M +N +G +V+ARYG++FRG+ V NA AGA G ++++D
Sbjct: 132 DLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPA 191
Query: 205 DYGGGSDDARWFPDDKWMPPSGVQVGSVYD--GTGDPTTPGWPSSEGCERLSKEEVEKAG 262
DY + + +PD +P GVQ G++ + G GDP TPG+P++E R + +A
Sbjct: 192 DYF--APGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRG---IAEAV 246
Query: 263 NVPLIPSLPISAKDGETIMRSIGGEVA-NEDWQGDKDAPIYRVGPG-PGVVNLSYTGEYV 320
+P IP PI D + ++ +GG + W+G P Y VGPG G + ++
Sbjct: 247 GLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVP-YNVGPGFTGNFSTQKVKMHI 305
Query: 321 MAT-----IQNVIGIIPGTEEPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQ 375
+T I NVIG + G EPDR VILG HRD+W FG +DP SG A + E+ + L+
Sbjct: 306 HSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGTLK 365
Query: 376 KRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVH-EAGFHASA 434
K GW+PRRTI+ +WDAEE+GL+GSTEW EEN +L R VAY+N DS++
Sbjct: 366 KEGWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRVDC 425
Query: 435 TPQLDELLKQAAKQVQDPDN--SSQTIYDSWTGSSNS------PVIGRLGGGGSDYAAFI 486
TP + L+ K+++ PD +++Y+SWT S S P I +L G G+D+ F
Sbjct: 426 TPLMYSLVHNLTKELKSPDEGFEGKSLYESWTKKSPSPEFSGMPRISKL-GSGNDFEVFF 484
Query: 487 QHIGVPVADMSFG--------TGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVAL 538
Q +G+ + +GYP+YHS+Y+ + +EKF DP F+ H+ A + G +
Sbjct: 485 QRLGIASGRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVF 544
Query: 539 QLADEEFLPFNYLSYAFELQKSTKDL-------ENEVSGKGISLIPLFKSIEELAKAAAK 591
+LA+ PF+ YA L+K + E+ +S LF +++ + A+K
Sbjct: 545 ELANSIVQPFDCRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASK 604
Query: 592 IDNEKKELQKAKGWASTWKKDQYKVRELNDRLMMAERAFTDRDGLSGRPWYKHLIYAPSK 651
++ K+ + +R +ND+LM ERAF D GL RP+Y+H+IYAPS
Sbjct: 605 FSERLQDFDKS---------NPIVLRMMNDQLMFLERAFIDPLGLPDRPFYRHVIYAPSS 655
Query: 652 HNDYGSKYFPAIDDAIEE-AMKLNTAKSWHTVQHEVWRVSRAVRHASLVLN 701
HN Y + FP I DA+ + K++ +K+W V+ +++ + V+ A+ L+
Sbjct: 656 HNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYVAAFTVQAAAETLS 706
>pdb|1DE4|C Chain C, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|F Chain F, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|I Chain I, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|3KAS|A Chain A, Machupo Virus Gp1 Bound To Human Transferrin Receptor 1
Length = 640
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 148/577 (25%), Positives = 266/577 (46%), Gaps = 56/577 (9%)
Query: 136 GYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAA 195
Y+K+ TV G +V+ N+G +D+ +++ V G++V+ R G+I + V NA A
Sbjct: 101 AYSKAATVTGKLVHANFGTKKDF---EDLYTPVNGSIVIVRAGKITFAEKVANAESLNAI 157
Query: 196 GALIFTDRKDYGGGSDDARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSK 255
G LI+ D+ + + + +F G + GTGDP TPG+PS +
Sbjct: 158 GVLIYMDQTKFPIVNAELSFF-------------GHAHLGTGDPYTPGFPSFNHTQF--- 201
Query: 256 EEVEKAGNVPLIPSLPISAKDGETIMRSIGGEVANEDWQGDKDAPIYRVGPGPGVVNLSY 315
++ +P IP IS E + ++ G+ + DW+ D + V V L+
Sbjct: 202 -PPSRSSGLPNIPVQTISRAAAEKLFGNMEGDCPS-DWKTDSTCRM--VTSESKNVKLTV 257
Query: 316 TGEYVMATIQNVIGIIPGTEEPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKL- 374
+ I N+ G+I G EPD V++G RDAW GA GTA LL++AQ + +
Sbjct: 258 SNVLKEIKILNIFGVIKGFVEPDHYVVVGAQRDAWGPGAAKSGVGTALLLKLAQMFSDMV 317
Query: 375 QKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAV-HEAGFHAS 433
K G++P R+I+ +W A ++G +G+TEW+E L +A Y+N+D AV + F S
Sbjct: 318 LKDGFQPSRSIIFASWSAGDFGSVGATEWLEGYLSSLHLKAFTYINLDKAVLGTSNFKVS 377
Query: 434 ATPQLDELLKQAAKQVQDPDNSSQTIYDS-WTGSSNSPVIGRLGGGGSDYAA--FIQHIG 490
A+P L L+++ + V+ P DS W + D AA F+ + G
Sbjct: 378 ASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWASKVEKLTL--------DNAAFPFLAYSG 429
Query: 491 VPVADMSF--GTGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLADEEFLPF 548
+P F T YP + D + + + + AAA + G ++L + L
Sbjct: 430 IPAVSFCFCEDTDYPYLGTTMDTYKELIERIPELNKVARAAAEVAGQFVIKLTHDVELNL 489
Query: 549 NYLSYAFELQKSTKDLEN---EVSGKGISLIPLFKSIEELAKAAAKIDNEKKELQKAKGW 605
+Y Y +L +DL ++ G+SL L+ + + +A +++ + +
Sbjct: 490 DYERYNSQLLSFVRDLNQYRADIKEMGLSLQWLYSARGDFFRATSRLTTD---------F 540
Query: 606 ASTWKKDQYKVRELNDRLMMAERAFTDRDGLSGRPWYKHLIYAPSKHNDYGSKYFPAIDD 665
+ K D++ +++LNDR+M E F ++H+ + GS PA+ +
Sbjct: 541 GNAEKTDRFVMKKLNDRVMRVEYHFLSPYVSPKESPFRHVFWGS------GSHTLPALLE 594
Query: 666 AIEEAMKLNTAKSWHTVQHEVWRVSRAVRHASLVLNG 702
++ + N A + ++++ + ++ A+ L+G
Sbjct: 595 NLKLRKQNNGAFNETLFRNQLALATWTIQGAANALSG 631
>pdb|1CX8|A Chain A, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|B Chain B, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|C Chain C, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|D Chain D, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|E Chain E, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|F Chain F, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|G Chain G, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|H Chain H, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1SUV|A Chain A, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1SUV|B Chain B, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|2NSU|A Chain A, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
pdb|2NSU|B Chain B, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
Length = 639
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 148/577 (25%), Positives = 266/577 (46%), Gaps = 56/577 (9%)
Query: 136 GYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAA 195
Y+K+ TV G +V+ N+G +D+ +++ V G++V+ R G+I + V NA A
Sbjct: 100 AYSKAATVTGKLVHANFGTKKDF---EDLYTPVNGSIVIVRAGKITFAEKVANAESLNAI 156
Query: 196 GALIFTDRKDYGGGSDDARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSK 255
G LI+ D+ + + + +F G + GTGDP TPG+PS +
Sbjct: 157 GVLIYMDQTKFPIVNAELSFF-------------GHAHLGTGDPYTPGFPSFNHTQF--- 200
Query: 256 EEVEKAGNVPLIPSLPISAKDGETIMRSIGGEVANEDWQGDKDAPIYRVGPGPGVVNLSY 315
++ +P IP IS E + ++ G+ + DW+ D + V V L+
Sbjct: 201 -PPSRSSGLPNIPVQTISRAAAEKLFGNMEGDCPS-DWKTDSTCRM--VTSESKNVKLTV 256
Query: 316 TGEYVMATIQNVIGIIPGTEEPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKL- 374
+ I N+ G+I G EPD V++G RDAW GA GTA LL++AQ + +
Sbjct: 257 SNVLKEIKILNIFGVIKGFVEPDHYVVVGAQRDAWGPGAAKSGVGTALLLKLAQMFSDMV 316
Query: 375 QKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAV-HEAGFHAS 433
K G++P R+I+ +W A ++G +G+TEW+E L +A Y+N+D AV + F S
Sbjct: 317 LKDGFQPSRSIIFASWSAGDFGSVGATEWLEGYLSSLHLKAFTYINLDKAVLGTSNFKVS 376
Query: 434 ATPQLDELLKQAAKQVQDPDNSSQTIYDS-WTGSSNSPVIGRLGGGGSDYAA--FIQHIG 490
A+P L L+++ + V+ P DS W + D AA F+ + G
Sbjct: 377 ASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWASKVEKLTL--------DNAAFPFLAYSG 428
Query: 491 VPVADMSF--GTGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLADEEFLPF 548
+P F T YP + D + + + + AAA + G ++L + L
Sbjct: 429 IPAVSFCFCEDTDYPYLGTTMDTYKELIERIPELNKVARAAAEVAGQFVIKLTHDVELNL 488
Query: 549 NYLSYAFELQKSTKDLEN---EVSGKGISLIPLFKSIEELAKAAAKIDNEKKELQKAKGW 605
+Y Y +L +DL ++ G+SL L+ + + +A +++ + +
Sbjct: 489 DYEEYNSQLLSFVRDLNQYRADIKEMGLSLQWLYSARGDFFRATSRLTTD---------F 539
Query: 606 ASTWKKDQYKVRELNDRLMMAERAFTDRDGLSGRPWYKHLIYAPSKHNDYGSKYFPAIDD 665
+ K D++ +++LNDR+M E F ++H+ + GS PA+ +
Sbjct: 540 GNAEKTDRFVMKKLNDRVMRVEYHFLSPYVSPKESPFRHVFWGS------GSHTLPALLE 593
Query: 666 AIEEAMKLNTAKSWHTVQHEVWRVSRAVRHASLVLNG 702
++ + N A + ++++ + ++ A+ L+G
Sbjct: 594 NLKLRKQNNGAFNETLFRNQLALATWTIQGAANALSG 630
>pdb|3S9L|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9L|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9M|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9M|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9N|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
pdb|3S9N|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
Length = 654
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 148/577 (25%), Positives = 266/577 (46%), Gaps = 56/577 (9%)
Query: 136 GYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAA 195
Y+K+ TV G +V+ N+G +D+ +++ V G++V+ R G+I + V NA A
Sbjct: 115 AYSKAATVTGKLVHANFGTKKDF---EDLYTPVNGSIVIVRAGKITFAEKVANAESLNAI 171
Query: 196 GALIFTDRKDYGGGSDDARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSK 255
G LI+ D+ + + + +F G + GTGDP TPG+PS +
Sbjct: 172 GVLIYMDQTKFPIVNAELSFF-------------GHAHLGTGDPYTPGFPSFNHTQF--- 215
Query: 256 EEVEKAGNVPLIPSLPISAKDGETIMRSIGGEVANEDWQGDKDAPIYRVGPGPGVVNLSY 315
++ +P IP IS E + ++ G+ + DW+ D + V V L+
Sbjct: 216 -PPSRSSGLPNIPVQTISRAAAEKLFGNMEGDCPS-DWKTDSTCRM--VTSESKNVKLTV 271
Query: 316 TGEYVMATIQNVIGIIPGTEEPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKL- 374
+ I N+ G+I G EPD V++G RDAW GA GTA LL++AQ + +
Sbjct: 272 SNVLKEIKILNIFGVIKGFVEPDHYVVVGAQRDAWGPGAAKSGVGTALLLKLAQMFSDMV 331
Query: 375 QKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAV-HEAGFHAS 433
K G++P R+I+ +W A ++G +G+TEW+E L +A Y+N+D AV + F S
Sbjct: 332 LKDGFQPSRSIIFASWSAGDFGSVGATEWLEGYLSSLHLKAFTYINLDKAVLGTSNFKVS 391
Query: 434 ATPQLDELLKQAAKQVQDPDNSSQTIYDS-WTGSSNSPVIGRLGGGGSDYAA--FIQHIG 490
A+P L L+++ + V+ P DS W + D AA F+ + G
Sbjct: 392 ASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWASKVEKLTL--------DNAAFPFLAYSG 443
Query: 491 VPVADMSF--GTGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLADEEFLPF 548
+P F T YP + D + + + + AAA + G ++L + L
Sbjct: 444 IPAVSFCFCEDTDYPYLGTTMDTYKELIERIPELNKVARAAAEVAGQFVIKLTHDVELNL 503
Query: 549 NYLSYAFELQKSTKDLEN---EVSGKGISLIPLFKSIEELAKAAAKIDNEKKELQKAKGW 605
+Y Y +L +DL ++ G+SL L+ + + +A +++ + +
Sbjct: 504 DYERYNSQLLSFVRDLNQYRADIKEMGLSLQWLYSARGDFFRATSRLTTD---------F 554
Query: 606 ASTWKKDQYKVRELNDRLMMAERAFTDRDGLSGRPWYKHLIYAPSKHNDYGSKYFPAIDD 665
+ K D++ +++LNDR+M E F ++H+ + GS PA+ +
Sbjct: 555 GNAEKTDRFVMKKLNDRVMRVEYHFLSPYVSPKESPFRHVFWGS------GSHTLPALLE 608
Query: 666 AIEEAMKLNTAKSWHTVQHEVWRVSRAVRHASLVLNG 702
++ + N A + ++++ + ++ A+ L+G
Sbjct: 609 NLKLRKQNNGAFNETLFRNQLALATWTIQGAANALSG 645
>pdb|1XJO|A Chain A, Structure Of Aminopeptidase
Length = 284
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 24/184 (13%)
Query: 322 ATIQNVIGIIPGTEEPDRLVILGNHRDAWTFGA--VDPNSGTAALLEVAQRLNKLQKRGW 379
AT N+I PG + P+++++ G H D+ + GA D SG+AA+LE A + + G+
Sbjct: 62 ATGYNLIANWPGGD-PNKVLMAGAHLDSVSSGAGINDNGSGSAAVLETAL---AVSRAGY 117
Query: 380 KPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVHEAGFHASATPQLD 439
+P + + W AEE GLIGS +V S+ YLN D S P
Sbjct: 118 QPDKHLRFAWWGAEELGLIGSKFYVNNLPSADRSKLAGYLNFDXI-------GSPNP--- 167
Query: 440 ELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPV-IGRLGGGGSDYAAFIQHIGVPVADMSF 498
V D D + + ++ N P I G G SD+A F +++GVPV +
Sbjct: 168 ------GYFVYDDDPVIEKTFKNYFAGLNVPTEIETEGDGRSDHAPF-KNVGVPVGGLFT 220
Query: 499 GTGY 502
G GY
Sbjct: 221 GAGY 224
>pdb|1CP7|A Chain A, Aminopeptidase From Streptomyces Griseus
pdb|1QQ9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
Methionine
pdb|1F2O|A Chain A, Crystal Structure Of The Streptomyces Griseus
Aminopeptidase Complexed With L-Leucine
pdb|1F2P|A Chain A, Crystal Structure Of The Streptomyces Griseus
Aminopeptidase Complexed With L-Phenylalanine
pdb|1TF8|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With L-
Tryptophan
pdb|1TF9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
P-Iodo-L- Phenylalanine
pdb|1TKF|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Tryptophan
pdb|1TKH|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Phenylalanine
pdb|1TKJ|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Methionine
pdb|1XBU|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
P-Iodo-D- Phenylalanine
Length = 284
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 24/184 (13%)
Query: 322 ATIQNVIGIIPGTEEPDRLVILGNHRDAWTFGA--VDPNSGTAALLEVAQRLNKLQKRGW 379
AT N+I PG + P+++++ G H D+ + GA D SG+AA+LE A + + G+
Sbjct: 62 ATGYNLIANWPGGD-PNKVLMAGAHLDSVSSGAGINDNGSGSAAVLETAL---AVSRAGY 117
Query: 380 KPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVHEAGFHASATPQLD 439
+P + + W AEE GLIGS +V S+ YLN D S P
Sbjct: 118 QPDKHLRFAWWGAEELGLIGSKFYVNNLPSADRSKLAGYLNFD-------MIGSPNP--- 167
Query: 440 ELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPV-IGRLGGGGSDYAAFIQHIGVPVADMSF 498
V D D + + ++ N P I G G SD+A F +++GVPV +
Sbjct: 168 ------GYFVYDDDPVIEKTFKNYFAGLNVPTEIETEGDGRSDHAPF-KNVGVPVGGLFT 220
Query: 499 GTGY 502
G GY
Sbjct: 221 GAGY 224
>pdb|3IIB|A Chain A, Crystal Structure Of Peptidase M28 Precursor (Yp_926796.1)
From Shewanella Amazonensis Sb2b At 1.70 A Resolution
Length = 444
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 24/206 (11%)
Query: 326 NVIGIIPGTEEPDRLVILGNHRDAWT--FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRR 383
NVI + G+ + D +V++G H D+W GA+D +G A + A+ + L + KP R
Sbjct: 237 NVIAEVKGSTKADEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAAAKHILDLPQ---KPER 293
Query: 384 TIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVHEAGFHASATPQLDELLK 443
TI + + AEE GL+G + +E+ L +A E+ F A Q+D
Sbjct: 294 TIRVVLYAAEELGLLGGKTYAKEHEAELEKHYIAA--------ESDFGAGPIYQID---W 342
Query: 444 QAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQHIGVPVADM-SFGTGY 502
+ A P ++ + + ++ + GG D + + +GVPVA + G+ Y
Sbjct: 343 RVADTAHSPVINAXKVAEPLGVAAGN----NKASGGPDVSX-LPALGVPVASLRQDGSDY 397
Query: 503 PVYHSMYDDFIWMEKFGDPTFQRHVA 528
YH +D ++K ++VA
Sbjct: 398 FDYHHTPNDT--LDKINPEALAQNVA 421
>pdb|3B35|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
pdb|3B3C|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine Phosphonic Acid
pdb|3B3S|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine
Length = 291
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 306 PGPGVVNLSYTGEYVMATIQNVIGIIPGTEEPDRLVILGNHRDAWTF----------GAV 355
P V +S++G ++V+ I G+E PD +++G H D+ GA
Sbjct: 61 PNASVKQVSHSGY----NQKSVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGAD 116
Query: 356 DPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRA 415
D SG AA+ EV + L + ++P+R+I + AEE GL GS + + +
Sbjct: 117 DDASGIAAVTEV---IRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSE-GKNV 172
Query: 416 VAYLNIDS 423
V+ L +D+
Sbjct: 173 VSALQLDA 180
>pdb|1CP6|A Chain A, 1-Butaneboronic Acid Binding To Aeromonas Proteolytica
Aminopeptidase
pdb|1FT7|A Chain A, Aap Complexed With L-Leucinephosphonic Acid
pdb|1LOK|A Chain A, The 1.20 Angstrom Resolution Crystal Structure Of The
Aminopeptidase From Aeromonas Proteolytica Complexed
With Tris: A Tale Of Buffer Inhibition
pdb|2PRQ|A Chain A, X-Ray Crystallographic Characterization Of The Co(Ii)-
Substituted Tris-Bound Form Of The Aminopeptidase From
Aeromonas Proteolytica
pdb|1AMP|A Chain A, Crystal Structure Of Aeromonas Proteolytica
Aminopeptidase: A Prototypical Member Of The
Co-Catalytic Zinc Enzyme Family
pdb|2IQ6|A Chain A, Crystal Structure Of The Aminopeptidase From Vibrio
Proteolyticus In Complexation With Leucyl-Leucyl-Leucine
Length = 291
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 306 PGPGVVNLSYTGEYVMATIQNVIGIIPGTEEPDRLVILGNHRDAWTF----------GAV 355
P V +S++G ++V+ I G+E PD +++G H D+ GA
Sbjct: 61 PNASVKQVSHSGY----NQKSVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGAD 116
Query: 356 DPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRA 415
D SG AA+ EV + L + ++P+R+I + AEE GL GS + + +
Sbjct: 117 DDASGIAAVTEV---IRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSE-GKNV 172
Query: 416 VAYLNID 422
V+ L +D
Sbjct: 173 VSALQLD 179
>pdb|3B3V|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
pdb|3B3W|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine
pdb|3B7I|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine Phosphonic Acid
Length = 291
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 306 PGPGVVNLSYTGEYVMATIQNVIGIIPGTEEPDRLVILGNHRDAWTF----------GAV 355
P V +S++G ++V+ I G+E PD +++G H D+ GA
Sbjct: 61 PNASVKQVSHSGY----NQKSVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGAD 116
Query: 356 DPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRA 415
D SG AA+ EV + L + ++P+R+I + AEE GL GS + + +
Sbjct: 117 DDASGIAAVTEV---IRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSE-GKNV 172
Query: 416 VAYLNID 422
V+ L +D
Sbjct: 173 VSALQLD 179
>pdb|1IGB|A Chain A, Aeromonas Proteolytica Aminopeptidase Complexed With The
Inhibitor Para-Iodo-D-Phenylalanine Hydroxamate
Length = 291
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 306 PGPGVVNLSYTGEYVMATIQNVIGIIPGTEEPDRLVILGNHRDAWTF----------GAV 355
P V +S++G ++V+ I G+E PD +++G H D+ GA
Sbjct: 61 PNASVKQVSHSGY----NQKSVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGAD 116
Query: 356 DPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRA 415
D SG AA+ EV + L + ++P+R+I + AEE GL GS + + +
Sbjct: 117 DDASGIAAVTEV---IRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSE-GKNV 172
Query: 416 VAYLNID 422
V+ L +D
Sbjct: 173 VSALQLD 179
>pdb|3B3T|A Chain A, Crystal Structure Of The D118n Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
Length = 291
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 306 PGPGVVNLSYTGEYVMATIQNVIGIIPGTEEPDRLVILGNHRDAWTF----------GAV 355
P V +S++G ++V+ I G+E PD +++G H D+ GA
Sbjct: 61 PNASVKQVSHSGY----NQKSVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGAD 116
Query: 356 DPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRA 415
D SG AA+ EV + L + ++P+R+I + AEE GL GS + + +
Sbjct: 117 DNASGIAAVTEV---IRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSE-GKNV 172
Query: 416 VAYLNID 422
V+ L +D
Sbjct: 173 VSALQLD 179
>pdb|1RTQ|A Chain A, The 0.95 Angstrom Resolution Crystal Structure Of The
Aminopeptidase From Aeromonas Proteolytica
pdb|1TXR|A Chain A, X-Ray Crystal Structure Of Bestatin Bound To Aap
pdb|1XRY|A Chain A, Crystal Structure Of Aeromonas Proteolytica Aminopeptidase
In Complex With Bestatin
pdb|2DEA|A Chain A, Crystal Structure Of The Aminopeptidase Of Aeromonas
Proteolytica At Ph 4.7
pdb|2NYQ|A Chain A, Structure Of Vibrio Proteolyticus Aminopeptidase With A
Bound Trp Fragment Of Dlwcf
pdb|3FH4|A Chain A, Crystal Structure Of Recombinant Vibrio Proteolyticus
Aminopeptidase
pdb|3VH9|A Chain A, Crystal Structure Of Aeromonas Proteolytica Aminopeptidase
Complexed With 8-Quinolinol
Length = 299
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 306 PGPGVVNLSYTGEYVMATIQNVIGIIPGTEEPDRLVILGNHRDAWTF----------GAV 355
P V +S++G ++V+ I G+E PD +++G H D+ GA
Sbjct: 61 PNASVKQVSHSGY----NQKSVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGAD 116
Query: 356 DPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRA 415
D SG AA+ EV + L + ++P+R+I + AEE GL GS + + +
Sbjct: 117 DDASGIAAVTEV---IRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSE-GKNV 172
Query: 416 VAYLNID 422
V+ L +D
Sbjct: 173 VSALQLD 179
>pdb|2ANP|A Chain A, Functional Glutamate 151 To Histidine Mutant Of The
Aminopeptidase From Aeromonas Proteolytica
Length = 291
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 18/127 (14%)
Query: 306 PGPGVVNLSYTGEYVMATIQNVIGIIPGTEEPDRLVILGNHRDAWTF----------GAV 355
P V +S++G ++V+ I G+E PD +++G H D+ GA
Sbjct: 61 PNASVKQVSHSGY----NQKSVVMTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGAD 116
Query: 356 DPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRA 415
D SG AA+ EV + L + ++P+R+I + A E GL GS + + +
Sbjct: 117 DDASGIAAVTEV---IRVLSENNFQPKRSIAFMAYAAHEVGLRGSQDLANQYKSE-GKNV 172
Query: 416 VAYLNID 422
V+ L +D
Sbjct: 173 VSALQLD 179
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 323 TIQNVIGIIPGTEEPDR-------LVILGNHRDAWTF--GAVDPNSGTAALLEVAQRLNK 373
T NVI T++PD ++I+G+H D+ GA D SG A LE+A+ ++K
Sbjct: 202 TSHNVIA----TKKPDANKKNTNDIIIIGSHHDSVEKAPGANDDASGVAVTLELARVMSK 257
Query: 374 LQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNID 422
L K + + AEE GLIGS ++ E R + +D
Sbjct: 258 L-----KTDTELRFITFGAEENGLIGSKKYAASLSEDEIKRTIGMFQLD 301
>pdb|3N5F|A Chain A, Crystal Structure Of L-N-Carbamoylase From Geobacillus
Stearothermophilus Cect43
pdb|3N5F|B Chain B, Crystal Structure Of L-N-Carbamoylase From Geobacillus
Stearothermophilus Cect43
Length = 408
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 22/154 (14%)
Query: 306 PGPGVVNLSYTGEYVMA------------------TIQNVIGIIPGTEEPDRLVILGNHR 347
P GV LS+T E A N+IG GT +V++G+H
Sbjct: 21 PSGGVTRLSFTAEERRAKDLVASYMREAGLFVYEDAAGNLIGRKEGTNPDATVVLVGSHL 80
Query: 348 DA-WTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAE--EYGLIGSTEWV 404
D+ + G D G A +EV Q +N+ P + + + +G+IGS
Sbjct: 81 DSVYNGGCFDGPLGVLAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGARFRFGMIGSRAMA 140
Query: 405 EE-NREMLASRAVAYLNIDSAVHEAGFHASATPQ 437
E L R +++ A+ +AG PQ
Sbjct: 141 GTLPPEALECRDAEGISLAEAMKQAGLDPDRLPQ 174
>pdb|4FUU|A Chain A, Crystal Structure Of A Leucine Aminopeptidase Precursor
(Bt_2548) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.30 A Resolution
Length = 309
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 352 FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYG 396
GA D SG ALLE+A+ +N+ Q P I + DAE+YG
Sbjct: 123 LGANDGASGVGALLEIARLVNQQQ-----PELGIDIIFLDAEDYG 162
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 149 YVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYG 207
Y N G ED +V G + L G I D + NA +AGA G LI+ D +D G
Sbjct: 275 YANRGMKEDDFK------DVKGKIALIERGDIDFKDKIANAKKAGAVGVLIY-DNQDKG 326
>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK7|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|E Chain E, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|F Chain F, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|G Chain G, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|H Chain H, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
Length = 269
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 26/115 (22%)
Query: 501 GYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLADEEFLPFNYLSYAFELQKS 560
G+PV HS+ P FQ A GL A+ LA E + L AFE K+
Sbjct: 13 GFPVKHSL-----------SPVFQN--ALIRYAGLNAVYLAFE--INPEELKKAFEGFKA 57
Query: 561 TKDLENEVSGKGIS------LIPLFKSIEELAKAAAKIDNEKKELQKAKGWASTW 609
K V G ++ +IPL +E+ AK ++ K E KA G+ + W
Sbjct: 58 LK-----VKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFENGKAYGYNTDW 107
>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
Length = 275
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 26/115 (22%)
Query: 501 GYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLADEEFLPFNYLSYAFELQKS 560
G+PV HS+ P FQ A GL A+ LA E + L AFE K+
Sbjct: 19 GFPVKHSL-----------SPVFQN--ALIRYAGLNAVYLAFE--INPEELKKAFEGFKA 63
Query: 561 TKDLENEVSGKGIS------LIPLFKSIEELAKAAAKIDNEKKELQKAKGWASTW 609
K V G ++ +IPL +E+ AK ++ K E KA G+ + W
Sbjct: 64 LK-----VKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFENGKAYGYNTDW 113
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 421 IDSAVHEAG-FHASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRL 475
+++ HEA +H+ TP LDE L A V P S T + S ++ VI L
Sbjct: 374 VEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSL 429
>pdb|3AX6|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
pdb|3AX6|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermotoga Maritima
Length = 380
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 479 GSDYAAF-IQHIGVPVADMSFGTGYPVYHSMYDDFIWMEKFGDPTF-QRHVAAASMWGLV 536
GSD + ++HI V + GY ++ S Y I +KF F +++ + LV
Sbjct: 62 GSDVTTYDLEHIDVQTLKKLYNEGYKIHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLV 121
Query: 537 ALQLADEEFLPFNYLSYAFE---------LQKSTKDLENEVSGKGISLIPLFKSIE-ELA 586
+D F + A + + K+ KDLEN + KG + + F IE ELA
Sbjct: 122 KDLESDVREFGFPVVQKARKGGYDGRGVFIIKNEKDLENAI--KGETYLEEFVEIEKELA 179
Query: 587 KAAAKIDNEKKEL 599
A+ NEK E+
Sbjct: 180 VXVAR--NEKGEI 190
>pdb|2VXR|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Serotype G
Binding Domain
Length = 482
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 312 NLSYTGEYVMATIQNVIGIIPGTEEPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRL 371
N+ G+Y+ I N+ ++E R+ +L N ++ T + P + +V Q
Sbjct: 349 NIVREGDYIYLNIDNI------SDESYRVYVLVNSKEIQTQLFLAPINDDPTFYDVLQIK 402
Query: 372 NKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEE 406
+K + + +LC D + +GL G ++V++
Sbjct: 403 KYYEKTTYNCQ---ILCEKDTKTFGLFGIGKFVKD 434
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,140,743
Number of Sequences: 62578
Number of extensions: 1067119
Number of successful extensions: 2672
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2576
Number of HSP's gapped (non-prelim): 38
length of query: 705
length of database: 14,973,337
effective HSP length: 106
effective length of query: 599
effective length of database: 8,340,069
effective search space: 4995701331
effective search space used: 4995701331
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)