Query 005260
Match_columns 705
No_of_seqs 332 out of 2518
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 20:39:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2195 Transferrin receptor a 100.0 1E-101 2E-106 879.5 53.8 637 30-701 46-700 (702)
2 cd02121 PA_GCPII_like PA_GCPII 100.0 1.8E-42 4E-47 345.9 20.7 203 95-307 3-209 (220)
3 cd02128 PA_TfR PA_TfR: Proteas 100.0 1.3E-37 2.7E-42 301.0 16.1 164 132-314 18-182 (183)
4 cd02131 PA_hNAALADL2_like PA_h 100.0 2.2E-36 4.8E-41 279.8 13.4 136 130-285 2-138 (153)
5 PF04389 Peptidase_M28: Peptid 100.0 3.4E-28 7.3E-33 239.5 13.7 160 339-516 1-174 (179)
6 PF04253 TFR_dimer: Transferri 99.9 2.3E-27 5E-32 220.0 9.0 125 572-703 1-125 (125)
7 COG4882 Predicted aminopeptida 99.9 3.9E-25 8.4E-30 226.8 25.0 356 46-558 4-374 (486)
8 PRK10199 alkaline phosphatase 99.9 2.2E-24 4.8E-29 229.1 19.3 204 323-544 96-345 (346)
9 KOG2194 Aminopeptidases of the 99.8 1.1E-19 2.5E-24 207.5 16.2 226 320-566 124-357 (834)
10 COG2234 Iap Predicted aminopep 99.8 5.8E-18 1.3E-22 189.8 16.4 168 324-514 195-374 (435)
11 cd04819 PA_2 PA_2: Protease-as 99.6 1.6E-14 3.4E-19 134.4 10.9 104 134-286 14-119 (127)
12 PF09940 DUF2172: Domain of un 99.6 2.9E-14 6.3E-19 150.3 12.9 177 310-516 103-287 (386)
13 PF05450 Nicastrin: Nicastrin; 99.5 9.1E-13 2E-17 134.5 16.5 167 339-516 1-199 (234)
14 KOG3946 Glutaminyl cyclase [Po 99.4 1.2E-12 2.7E-17 131.6 12.6 223 263-516 61-317 (338)
15 cd04820 PA_M28_1_1 PA_M28_1_1: 99.4 1.4E-12 3E-17 121.5 7.7 78 129-206 8-98 (137)
16 cd04816 PA_SaNapH_like PA_SaNa 99.3 1E-11 2.3E-16 114.7 11.2 108 133-286 7-114 (122)
17 cd02130 PA_ScAPY_like PA_ScAPY 99.3 3.8E-11 8.3E-16 110.9 11.3 100 134-286 13-114 (122)
18 cd04822 PA_M28_1_3 PA_M28_1_3: 99.2 1.4E-11 3E-16 116.9 7.9 72 135-206 12-102 (151)
19 cd04817 PA_VapT_like PA_VapT_l 99.2 3.7E-11 7.9E-16 112.5 10.3 102 134-286 27-133 (139)
20 cd02133 PA_C5a_like PA_C5a_lik 99.1 1.7E-10 3.6E-15 109.7 9.5 93 138-285 21-113 (143)
21 cd04814 PA_M28_1 PA_M28_1: Pro 99.1 9.9E-11 2.2E-15 109.8 7.4 65 135-204 12-100 (142)
22 cd04815 PA_M28_2 PA_M28_2: Pro 99.1 7.2E-10 1.6E-14 104.0 11.4 105 134-286 8-126 (134)
23 PF02225 PA: PA domain; Inter 99.0 3.9E-10 8.5E-15 100.1 6.1 64 138-201 1-65 (101)
24 KOG2526 Predicted aminopeptida 99.0 2E-09 4.3E-14 114.2 10.6 191 320-516 189-399 (555)
25 cd04821 PA_M28_1_2 PA_M28_1_2: 98.9 4.1E-09 8.9E-14 100.8 8.8 58 142-204 21-103 (157)
26 cd00538 PA PA: Protease-associ 98.9 6.5E-09 1.4E-13 96.0 9.7 97 138-285 21-117 (126)
27 TIGR03176 AllC allantoate amid 98.8 1.8E-08 4E-13 112.2 10.0 81 322-405 53-139 (406)
28 COG4310 Uncharacterized protei 98.8 5.3E-08 1.2E-12 99.7 11.9 155 331-516 173-335 (435)
29 cd02129 PA_hSPPL_like PA_hSPPL 98.7 4.7E-08 1E-12 89.2 9.0 79 155-285 35-113 (120)
30 cd02126 PA_EDEM3_like PA_EDEM3 98.7 6.4E-08 1.4E-12 89.9 9.1 101 141-286 15-118 (126)
31 TIGR01879 hydantase amidase, h 98.6 1.2E-07 2.6E-12 105.5 10.5 81 324-407 53-139 (401)
32 cd02132 PA_GO-like PA_GO-like: 98.6 2.7E-07 5.8E-12 87.2 10.5 95 140-286 35-131 (139)
33 PRK13799 unknown domain/N-carb 98.6 1.3E-07 2.9E-12 110.0 9.8 81 322-405 235-321 (591)
34 PRK13590 putative bifunctional 98.5 2.2E-07 4.7E-12 108.3 10.0 81 322-405 235-321 (591)
35 cd02123 PA_C_RZF_like PA_C-RZF 98.5 7.4E-07 1.6E-11 85.6 9.7 101 139-286 36-139 (153)
36 cd02122 PA_GRAIL_like PA _GRAI 98.4 1.2E-06 2.6E-11 82.5 9.8 103 134-286 21-130 (138)
37 PF01546 Peptidase_M20: Peptid 98.4 5.2E-06 1.1E-10 81.8 14.6 143 342-513 1-172 (189)
38 cd02127 PA_hPAP21_like PA_hPAP 98.4 1.3E-06 2.9E-11 80.0 9.0 95 143-286 11-108 (118)
39 PRK12890 allantoate amidohydro 98.4 1.5E-06 3.3E-11 97.0 10.3 80 324-406 60-145 (414)
40 cd02125 PA_VSR PA_VSR: Proteas 98.3 3.6E-06 7.8E-11 78.2 10.6 62 141-203 9-76 (127)
41 PRK12891 allantoate amidohydro 98.3 2.5E-06 5.3E-11 95.5 9.9 78 324-404 62-145 (414)
42 cd04813 PA_1 PA_1: Protease-as 98.3 2.6E-06 5.6E-11 78.0 8.0 76 166-286 36-111 (117)
43 cd04818 PA_subtilisin_1 PA_sub 98.2 1.3E-05 2.8E-10 73.5 10.4 92 142-285 16-109 (118)
44 KOG2657 Transmembrane glycopro 98.1 1.5E-05 3.2E-10 87.2 10.9 184 322-516 155-370 (596)
45 PRK12893 allantoate amidohydro 98.1 8.4E-06 1.8E-10 91.0 9.0 80 325-407 63-148 (412)
46 PRK09961 exoaminopeptidase; Pr 98.1 5E-05 1.1E-09 82.7 14.3 148 353-540 163-333 (344)
47 PRK09290 allantoate amidohydro 98.1 1.3E-05 2.9E-10 89.5 10.1 81 324-407 59-145 (413)
48 PRK12892 allantoate amidohydro 98.0 1.8E-05 3.9E-10 88.4 10.3 80 324-407 61-146 (412)
49 COG1363 FrvX Cellulase M and r 98.0 9E-05 1.9E-09 80.0 15.1 152 353-543 177-349 (355)
50 cd02120 PA_subtilisin_like PA_ 98.0 1.1E-05 2.4E-10 74.7 6.9 71 165-286 47-118 (126)
51 PRK07906 hypothetical protein; 98.0 2.3E-05 4.9E-10 88.0 10.1 83 324-409 51-156 (426)
52 PF05343 Peptidase_M42: M42 gl 98.0 3.9E-05 8.5E-10 81.5 10.5 132 353-514 131-283 (292)
53 PRK09133 hypothetical protein; 97.9 3.9E-05 8.4E-10 87.3 10.9 91 324-420 88-201 (472)
54 PRK06133 glutamate carboxypept 97.9 4.1E-05 8.9E-10 85.5 10.2 80 324-408 87-185 (410)
55 cd02124 PA_PoS1_like PA_PoS1_l 97.9 3.8E-05 8.2E-10 71.6 7.7 37 167-203 53-89 (129)
56 TIGR01910 DapE-ArgE acetylorni 97.9 4.5E-05 9.7E-10 84.1 9.0 78 325-406 52-152 (375)
57 TIGR01883 PepT-like peptidase 97.8 4.2E-05 9E-10 83.8 8.5 78 324-406 49-146 (361)
58 PRK08596 acetylornithine deace 97.7 0.00011 2.4E-09 82.3 9.9 80 325-407 63-166 (421)
59 TIGR03107 glu_aminopep glutamy 97.7 0.00033 7.3E-09 76.2 12.2 146 354-540 176-341 (350)
60 TIGR01882 peptidase-T peptidas 97.7 0.0002 4.3E-09 80.1 10.5 77 324-405 57-187 (410)
61 PRK13381 peptidase T; Provisio 97.7 0.00016 3.5E-09 80.6 9.6 79 324-406 54-184 (404)
62 TIGR01893 aa-his-dipept aminoa 97.7 0.00017 3.6E-09 82.3 9.8 88 324-423 46-164 (477)
63 PRK07907 hypothetical protein; 97.6 0.0003 6.4E-09 79.6 11.3 79 324-409 70-171 (449)
64 PRK13983 diaminopimelate amino 97.6 0.0002 4.4E-09 79.4 9.8 80 324-407 63-166 (400)
65 TIGR01892 AcOrn-deacetyl acety 97.6 0.00035 7.6E-09 76.4 11.3 78 324-408 46-145 (364)
66 PRK06837 acetylornithine deace 97.6 0.00022 4.7E-09 80.1 9.6 80 323-405 82-184 (427)
67 PRK09104 hypothetical protein; 97.6 0.00032 6.8E-09 79.7 11.0 83 324-409 68-178 (464)
68 PRK08588 succinyl-diaminopimel 97.6 0.00034 7.3E-09 77.1 10.3 77 324-406 48-147 (377)
69 KOG2275 Aminoacylase ACY1 and 97.5 0.00047 1E-08 74.5 10.7 79 324-405 74-176 (420)
70 PRK07473 carboxypeptidase; Pro 97.5 0.00035 7.6E-09 77.2 9.7 81 325-408 62-161 (376)
71 PRK08262 hypothetical protein; 97.5 0.0005 1.1E-08 78.6 11.2 80 325-407 98-202 (486)
72 PRK13013 succinyl-diaminopimel 97.5 0.00043 9.3E-09 77.6 9.6 79 324-406 71-170 (427)
73 PRK07338 hypothetical protein; 97.4 0.00047 1E-08 76.7 9.0 79 325-408 81-178 (402)
74 PRK05469 peptidase T; Provisio 97.4 0.00065 1.4E-08 75.8 10.0 78 324-405 55-185 (408)
75 PRK07079 hypothetical protein; 97.4 0.0011 2.4E-08 75.4 11.7 83 324-409 72-178 (469)
76 PRK08201 hypothetical protein; 97.4 0.00095 2.1E-08 75.7 11.1 82 324-409 66-170 (456)
77 PRK06915 acetylornithine deace 97.4 0.00065 1.4E-08 76.1 9.6 80 323-406 79-181 (422)
78 PRK06446 hypothetical protein; 97.4 0.00087 1.9E-08 75.6 10.5 81 324-410 50-153 (436)
79 PRK13009 succinyl-diaminopimel 97.3 0.0011 2.3E-08 73.1 10.3 78 324-407 47-148 (375)
80 PRK07522 acetylornithine deace 97.3 0.0008 1.7E-08 74.3 9.3 78 324-408 52-151 (385)
81 TIGR01880 Ac-peptdase-euk N-ac 97.3 0.00085 1.8E-08 74.6 9.3 80 324-406 57-160 (400)
82 PRK09864 putative peptidase; P 97.3 0.0027 5.9E-08 69.2 12.5 129 354-514 173-324 (356)
83 PRK04443 acetyl-lysine deacety 97.2 0.0013 2.7E-08 71.9 9.1 75 324-407 48-136 (348)
84 PRK05111 acetylornithine deace 97.1 0.0016 3.4E-08 72.0 8.8 76 324-407 60-157 (383)
85 PRK08652 acetylornithine deace 97.1 0.0014 3E-08 71.3 8.1 73 324-407 47-133 (347)
86 PRK07318 dipeptidase PepV; Rev 97.1 0.0018 3.9E-08 73.7 9.3 78 326-407 68-166 (466)
87 PRK08554 peptidase; Reviewed 97.1 0.003 6.5E-08 71.3 10.7 92 324-424 52-165 (438)
88 TIGR01886 dipeptidase dipeptid 97.0 0.0021 4.5E-08 73.1 9.4 79 326-408 67-166 (466)
89 PRK13007 succinyl-diaminopimel 97.0 0.0024 5.2E-08 69.6 9.3 74 325-407 50-141 (352)
90 PRK06156 hypothetical protein; 97.0 0.0037 8.1E-08 72.1 10.7 89 325-423 96-213 (520)
91 PRK13004 peptidase; Reviewed 97.0 0.0029 6.4E-08 70.4 9.5 76 325-406 59-158 (399)
92 COG0624 ArgE Acetylornithine d 96.9 0.0043 9.2E-08 69.3 10.2 97 323-423 61-180 (409)
93 PRK07205 hypothetical protein; 96.8 0.0044 9.6E-08 70.0 9.7 75 326-406 66-163 (444)
94 TIGR01900 dapE-gram_pos succin 96.8 0.0048 1E-07 68.1 9.5 79 326-407 42-155 (373)
95 TIGR01902 dapE-lys-deAc N-acet 96.8 0.0043 9.4E-08 67.3 8.8 73 325-407 40-126 (336)
96 PRK08651 succinyl-diaminopimel 96.8 0.0041 8.9E-08 68.9 8.6 76 324-408 63-160 (394)
97 TIGR01887 dipeptidaselike dipe 96.6 0.0084 1.8E-07 67.9 9.9 66 338-406 67-153 (447)
98 TIGR01891 amidohydrolases amid 96.6 0.0074 1.6E-07 66.2 9.2 76 324-407 43-137 (363)
99 TIGR03106 trio_M42_hydro hydro 96.5 0.028 6.1E-07 61.3 12.5 128 355-513 182-324 (343)
100 PRK10199 alkaline phosphatase 96.4 0.0081 1.8E-07 64.9 7.8 49 40-88 29-79 (346)
101 PRK00466 acetyl-lysine deacety 96.4 0.0072 1.6E-07 65.9 7.2 61 340-407 62-136 (346)
102 PRK15026 aminoacyl-histidine d 96.4 0.014 3E-07 66.8 9.5 90 323-424 51-171 (485)
103 TIGR01246 dapE_proteo succinyl 96.3 0.015 3.1E-07 64.0 9.1 78 324-407 44-145 (370)
104 PLN02693 IAA-amino acid hydrol 96.3 0.014 2.9E-07 66.0 8.7 78 324-407 90-183 (437)
105 COG4187 RocB Arginine degradat 96.0 0.036 7.8E-07 60.5 9.6 98 323-425 64-208 (553)
106 PLN02280 IAA-amino acid hydrol 96.0 0.022 4.7E-07 65.0 8.6 76 324-406 140-232 (478)
107 PRK02256 putative aminopeptida 95.7 0.066 1.4E-06 60.4 10.9 152 342-515 246-446 (462)
108 TIGR03526 selenium_YgeY putati 95.7 0.038 8.3E-07 61.4 9.0 76 325-406 57-156 (395)
109 KOG2442 Uncharacterized conser 95.4 0.037 7.9E-07 60.9 7.3 94 144-285 72-166 (541)
110 PRK08737 acetylornithine deace 95.3 0.055 1.2E-06 59.5 8.5 69 324-407 54-144 (364)
111 TIGR03320 ygeY M20/DapE family 95.2 0.067 1.5E-06 59.4 8.7 75 325-405 57-155 (395)
112 PTZ00371 aspartyl aminopeptida 94.4 0.26 5.7E-06 55.9 10.9 145 353-515 248-439 (465)
113 PRK02813 putative aminopeptida 93.7 0.54 1.2E-05 52.8 11.7 137 353-515 231-412 (428)
114 PF04114 Gaa1: Gaa1-like, GPI 91.3 0.79 1.7E-05 52.6 9.1 95 324-427 3-110 (504)
115 KOG3920 Uncharacterized conser 89.8 0.39 8.4E-06 45.4 3.9 54 146-203 67-120 (193)
116 KOG2276 Metalloexopeptidases [ 88.7 1.7 3.7E-05 47.4 8.3 77 331-410 84-183 (473)
117 PRK07338 hypothetical protein; 88.5 44 0.00095 37.0 32.8 44 41-84 16-60 (402)
118 KOG4628 Predicted E3 ubiquitin 88.2 0.71 1.5E-05 49.8 5.2 40 165-204 75-114 (348)
119 COG1473 AbgB Metal-dependent a 84.2 4 8.6E-05 45.4 8.6 78 325-407 57-150 (392)
120 KOG3946 Glutaminyl cyclase [Po 83.7 4.1 8.8E-05 42.6 7.7 49 38-87 47-95 (338)
121 PRK06133 glutamate carboxypept 78.6 8.3 0.00018 43.1 8.8 46 40-85 35-81 (410)
122 PRK12893 allantoate amidohydro 73.3 5.9 0.00013 44.1 5.8 46 39-84 7-60 (412)
123 PRK08596 acetylornithine deace 73.2 69 0.0015 35.8 14.4 44 42-85 13-57 (421)
124 KOG3566 Glycosylphosphatidylin 73.1 12 0.00026 43.0 7.9 78 322-409 118-196 (617)
125 PRK12890 allantoate amidohydro 70.3 8.1 0.00018 43.1 6.1 46 39-84 6-58 (414)
126 PRK09290 allantoate amidohydro 68.2 9.1 0.0002 42.7 5.9 47 38-84 3-57 (413)
127 PRK12891 allantoate amidohydro 66.6 9.9 0.00021 42.5 5.8 46 39-84 7-60 (414)
128 TIGR03176 AllC allantoate amid 62.1 11 0.00023 42.2 4.9 53 42-94 3-64 (406)
129 PRK13013 succinyl-diaminopimel 58.7 1.8E+02 0.0038 32.4 14.0 44 41-84 13-57 (427)
130 PRK07473 carboxypeptidase; Pro 57.9 2.4E+02 0.0053 30.9 14.7 46 39-84 8-54 (376)
131 PRK07906 hypothetical protein; 57.5 1.2E+02 0.0026 33.8 12.4 25 60-84 21-45 (426)
132 PRK15026 aminoacyl-histidine d 55.9 22 0.00048 40.7 6.2 53 38-92 6-59 (485)
133 TIGR01879 hydantase amidase, h 55.8 24 0.00053 39.2 6.4 43 43-85 2-52 (401)
134 PRK13799 unknown domain/N-carb 53.3 18 0.00039 42.6 5.0 54 41-94 180-246 (591)
135 PLN02693 IAA-amino acid hydrol 52.0 40 0.00088 38.1 7.4 52 27-82 30-85 (437)
136 PRK12892 allantoate amidohydro 47.7 33 0.00073 38.1 5.9 46 39-84 7-59 (412)
137 TIGR03107 glu_aminopep glutamy 46.6 18 0.0004 39.6 3.5 38 320-357 36-76 (350)
138 KOG2275 Aminoacylase ACY1 and 45.3 4.4E+02 0.0095 29.5 13.5 139 38-202 25-190 (420)
139 TIGR01886 dipeptidase dipeptid 45.3 1.8E+02 0.004 33.0 11.5 42 42-83 13-64 (466)
140 KOG2194 Aminopeptidases of the 45.0 46 0.00099 40.3 6.5 47 30-78 47-95 (834)
141 TIGR01893 aa-his-dipept aminoa 44.2 33 0.00072 39.1 5.3 51 41-93 3-54 (477)
142 PRK06156 hypothetical protein; 43.6 2.9E+02 0.0063 31.9 12.9 57 26-83 31-94 (520)
143 PRK09133 hypothetical protein; 43.2 52 0.0011 37.4 6.7 45 38-82 33-77 (472)
144 TIGR01935 NOT-MenG RraA famliy 42.8 90 0.0019 29.9 7.1 68 132-201 17-90 (150)
145 PRK13590 putative bifunctional 42.7 38 0.00082 39.9 5.5 47 40-86 179-237 (591)
146 PRK06915 acetylornithine deace 41.1 39 0.00086 37.6 5.2 53 28-84 3-57 (422)
147 cd01356 AcnX_swivel Putative A 40.2 74 0.0016 29.4 5.8 39 165-203 39-80 (123)
148 PRK08652 acetylornithine deace 38.4 54 0.0012 35.2 5.6 42 42-85 2-43 (347)
149 TIGR02998 RraA_entero regulato 35.8 1.5E+02 0.0032 28.8 7.4 68 132-201 21-94 (161)
150 TIGR01880 Ac-peptdase-euk N-ac 33.5 78 0.0017 35.0 6.0 46 38-83 5-50 (400)
151 PRK04443 acetyl-lysine deacety 32.9 76 0.0016 34.4 5.6 45 39-85 3-47 (348)
152 PRK09372 ribonuclease activity 32.3 1.6E+02 0.0035 28.5 7.1 66 134-200 23-93 (159)
153 PRK05111 acetylornithine deace 31.2 83 0.0018 34.4 5.7 46 40-85 3-53 (383)
154 TIGR01883 PepT-like peptidase 29.4 74 0.0016 34.5 4.8 41 43-85 1-41 (361)
155 PRK08588 succinyl-diaminopimel 28.1 1E+02 0.0022 33.7 5.6 42 42-85 2-43 (377)
156 PRK13983 diaminopimelate amino 27.9 1E+02 0.0022 33.9 5.7 43 42-84 5-51 (400)
157 TIGR03106 trio_M42_hydro hydro 27.0 1E+02 0.0022 33.6 5.4 45 41-87 2-46 (343)
158 TIGR01882 peptidase-T peptidas 26.3 1.3E+02 0.0029 33.4 6.2 40 56-95 25-67 (410)
159 PF06160 EzrA: Septation ring 26.1 2.6E+02 0.0057 32.7 8.8 89 541-632 433-528 (560)
160 PRK08651 succinyl-diaminopimel 25.9 1.1E+02 0.0024 33.6 5.5 45 41-85 5-50 (394)
161 PRK13381 peptidase T; Provisio 24.8 2.2E+02 0.0048 31.5 7.7 52 478-541 352-403 (404)
162 TIGR01891 amidohydrolases amid 24.8 88 0.0019 34.1 4.4 37 45-83 2-38 (363)
163 PRK05469 peptidase T; Provisio 24.4 1.3E+02 0.0028 33.4 5.7 54 478-543 354-407 (408)
164 COG2195 PepD Di- and tripeptid 24.2 4.6E+02 0.01 29.5 9.8 42 39-82 2-43 (414)
165 TIGR01910 DapE-ArgE acetylorni 24.1 1E+02 0.0022 33.6 4.8 38 47-84 3-41 (375)
166 PRK12487 ribonuclease activity 23.9 2.7E+02 0.0058 27.1 6.9 67 133-201 22-94 (163)
167 PRK07522 acetylornithine deace 22.9 1.3E+02 0.0029 32.8 5.4 41 42-83 4-44 (385)
168 PRK06201 hypothetical protein; 22.4 2.8E+02 0.006 28.3 7.1 65 137-201 47-116 (221)
169 TIGR02708 L_lactate_ox L-lacta 22.3 1.5E+02 0.0033 32.7 5.5 33 168-200 280-312 (367)
170 PRK00466 acetyl-lysine deacety 22.2 1.4E+02 0.003 32.3 5.3 42 42-85 10-51 (346)
171 PHA02681 ORF089 virion membran 22.1 1.4E+02 0.003 25.5 3.9 58 6-65 15-78 (92)
172 PRK04778 septation ring format 21.2 3.9E+02 0.0085 31.3 9.0 90 538-630 434-530 (569)
173 KOG0538 Glycolate oxidase [Ene 21.2 1.5E+02 0.0032 31.8 4.8 43 158-200 265-307 (363)
174 PRK03955 hypothetical protein; 20.8 2.9E+02 0.0064 25.8 6.3 38 165-202 46-86 (131)
175 TIGR02798 ligK_PcmE 4-carboxy- 20.3 3.3E+02 0.0072 27.8 7.2 65 137-201 43-112 (222)
No 1
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=100.00 E-value=1e-101 Score=879.51 Aligned_cols=637 Identities=42% Similarity=0.727 Sum_probs=545.2
Q ss_pred HHHhhccCCCChhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCc-eeeeEEEEEEeeeCcc---ceEEecCCC
Q 005260 30 HSLYTSTSLSDNVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLE-SHIASYGVSLTYPVSR---SLSLTRPPP 105 (705)
Q Consensus 30 ~~~~~~~~~i~~~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~-~~~~~y~v~~~~P~~~---~l~l~~~~g 105 (705)
...++. ....+++...++.++..+|++||..+.++++++..+|.+.|++ .+.-.|.+.++||... ...+...++
T Consensus 46 ~~l~~~--~~~~~ni~~~l~~~~~~~~~a~t~~~~~~a~~i~~~~~~~g~~s~~~~~y~v~l~~p~~~~~~~~~~~~e~~ 123 (702)
T KOG2195|consen 46 LELAQG--ELYASNISKNLNAFTLRPHLAGTEQDLRAAEIILSQYLEAGLRSSSLLAYDVLLSYPEYENPSSVLIKLEKD 123 (702)
T ss_pred HHHhhh--hccccchhhccchhhhhhhhhcchhhHHHHHHHHHHhhhhccccccccceeehhccccccCCccceeccccc
Confidence 444555 6777789999999999999999999999999999999999998 4889999999999532 222222234
Q ss_pred CCCeEeeecccccCCCCCCCCCCccccccccCCCCcceEEeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCcchhH
Q 005260 106 QPPITFALRQEIYEGDPYADVADEVLPTFHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDI 185 (705)
Q Consensus 106 ~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvl~~~g~~~~~~k 185 (705)
...+.....+..+.+++ ...+.+.+|.+||+.|.++|++||+|||+.+||+.|+..|++++|||+|+|++.+++|.|
T Consensus 124 ~~i~~s~~~~~~~~Gd~---~~~~~~~~~~~~s~~g~~~~~~Vy~N~~~~~d~~~l~~~~i~~~g~i~l~r~~~i~~g~~ 200 (702)
T KOG2195|consen 124 LEIFSSMPHELQVDGDE---ALPDIVEPFRAYSPSGSVTGELVYANYGRIEDFYKLEDLGINLSGKIVLARVGKIYRGKK 200 (702)
T ss_pred ceeeccchhcccCCCcc---cCccccCchhccCcCCCccceEEEEecCchhhhhHhhcCcccccCceEEEEccccchhhh
Confidence 44555566666665554 245678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEEecCCCCCCCCCCCCcCCCCCC-CCCCCceeeeee--cCCCCCCCCCCCCCCcccccchHHHhhcC
Q 005260 186 VHNAFEAGAAGALIFTDRKDYGGGSDDARWFPDDKW-MPPSGVQVGSVY--DGTGDPTTPGWPSSEGCERLSKEEVEKAG 262 (705)
Q Consensus 186 ~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP~~~~-~p~~~v~rg~v~--~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~ 262 (705)
+++|+.+||.|||+|+||.+++..... ++||.++| +|+..+++|.|. .+.|||+||+||+.....+.++ +....+
T Consensus 201 ~~na~~~~a~gviiy~d~~d~~~~~~~-~~~p~~~~~~p~~~v~~g~v~~~~~~gdp~tpg~pa~~~~~~~~~-~~~~~~ 278 (702)
T KOG2195|consen 201 VKNAEAAGADGVIIYTDPYDYGSDEVL-EVYPKGIWFMPEPGVERGKVYNSNGVGDPLTPGYPAVDIYSRHSP-DAKFSG 278 (702)
T ss_pred HhhHHHhhcCcEEEeeccccccccccc-cccCcccccCCccceecceecccCCCCCCCCCCccCccccccCCh-hhhhcC
Confidence 999999999999999999988765433 79999999 899999999995 6789999999999988887774 222225
Q ss_pred CCCCCCcccCCHHHHHHHHHHcCCCCCCccccCCCCCCccccCCCCe-EEE-EEEeeeeeeeeeeeEEEEecCCCCCCcE
Q 005260 263 NVPLIPSLPISAKDGETIMRSIGGEVANEDWQGDKDAPIYRVGPGPG-VVN-LSYTGEYVMATIQNVIGIIPGTEEPDRL 340 (705)
Q Consensus 263 ~~p~IP~~~is~~~a~~Ll~~l~~~~~~~~w~~~l~~~~y~~gp~~~-~v~-l~~~~~~~~~~~~NVia~i~G~~~p~~~ 340 (705)
.+|+||++|||+++++.|++.++|...+. +.+ +++|++||+.. ... +.+....+.+.+.||||+|+|+.+||++
T Consensus 279 ~~P~Ip~~Pis~~~ae~l~~~~~g~~~~~---~~~-~~~~~~gpg~~~~~~~~~~~~~~~~~ki~NIig~I~Gs~epD~~ 354 (702)
T KOG2195|consen 279 GLPKIPSLPISAEDAEILLRLLGGGVKPD---GLL-GVSYRVGPGSTGDKDLVVVQNTREETKIQNIIGKIEGSEEPDRY 354 (702)
T ss_pred CCCCCCCcCccchhHHHHHHHhCCCcccc---ccc-CccccccccccccccceeccceeeeeeeeeEEEEEecCcCCCeE
Confidence 69999999999999999999988766555 333 38999999753 111 2222578899999999999999999999
Q ss_pred EEEeeccCCcCCCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHHhhhccEEEEEE
Q 005260 341 VILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLN 420 (705)
Q Consensus 341 ViigaH~Ds~~~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iN 420 (705)
||||||+|||.+||.|++||+|+|+|++|.|..+++.||||+|||+||+|+|||+|++||++|+|++...|..++++|||
T Consensus 355 ViigahrDSw~~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEfGliGStE~~E~~~~~L~~~av~yin 434 (702)
T KOG2195|consen 355 VIIGAHRDSWTFGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEEFGLLGSTEWAEEYLKNLKSRAVVYIN 434 (702)
T ss_pred EEEeccccccccCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhccccccHHHHHHHHHHhhheeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccC-CccccccChhHHHHHHHHHHHcCCCCCCccchhhccccCCCCCccccCCCCCCchHHHHhcCCceEEEeeeC
Q 005260 421 IDSAVHE-AGFHASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQHIGVPVADMSFG 499 (705)
Q Consensus 421 lD~~g~g-~~l~~~~sp~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~g~~~SD~~~F~~~~GIPs~~l~~~ 499 (705)
+|+++.| ..|.+.++|.|.+++.++++.+.+|....++. .+..+| ++|||.+|.+++|||++++.|+
T Consensus 435 ~d~~~~~~~~l~~~~~PlL~~li~~~~k~~~~p~~~~~~~-----------~v~~~g-~~Sd~~~F~~~~GIpsv~~~f~ 502 (702)
T KOG2195|consen 435 VDNAVLGDYTLHVKTTPLLTDLIEEAAKSVLSPDKGDQSN-----------RVLSLG-GGSDYASFLQFAGIPSVDFAFN 502 (702)
T ss_pred ccccccCCceeEEecCccHHHHHHHHHhccCCCCccccce-----------eEeccC-CCCcchhhccccCcceeeeeec
Confidence 9999999 89999999999999999999998887633322 245566 9999999999999999999999
Q ss_pred CCCCCCCCCccchHHHHhhCCcchHHHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHHHHhhhcCC-------
Q 005260 500 TGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLADEEFLPFNYLSYAFELQKSTKDLENEVSGKG------- 572 (705)
Q Consensus 500 ~~~p~yHt~~Dt~~~l~~~~dp~~~~~~~~a~~~~~l~~~La~~~~lP~d~~~y~~~l~~~~~~l~~~~~~~~------- 572 (705)
..||+|||.+||++|++++.||.|..|.+++.+++..++.+++++++|||+.+|++.+.+++..+++...+..
T Consensus 503 ~~yP~yhs~~dt~~~~~k~~D~~~~~~~~~a~~~~~~~l~l~~d~llPfd~~~Y~~~l~~~~~~l~~~~~~~~~~~~~~~ 582 (702)
T KOG2195|consen 503 RTYPFYHSTYDTYEWLDKLLDPKFKQHLAAAGVLGLELLILADDPLLPFDISDYADVLLKTLPKLEELSPDKVNFLLTIQ 582 (702)
T ss_pred CCcceeecccCcHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCccccCcHHHHHHHHHHHHHHHHhhcccccchhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987543321
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHhccCCCCCCCCCCCceEEecCCCC
Q 005260 573 ISLIPLFKSIEELAKAAAKIDNEKKELQKAKGWASTWKKDQYKVRELNDRLMMAERAFTDRDGLSGRPWYKHLIYAPSKH 652 (705)
Q Consensus 573 ~~~~~l~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~l~~~er~fl~~~glp~r~~~khv~~~p~~~ 652 (705)
..+.++.+++..+.+.+..+....++.+ +.++..++..|+|||++||+||+|+|+|+|+|||||+|+|+.|
T Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~N~~l~~~er~f~~p~g~p~~~~yrHv~~gp~~~ 653 (702)
T KOG2195|consen 583 GLFSWRLDALKAAEWESSELSSRFSHGD---------KIEPSKLRPNNDRLMLIERTFLDPAGLPGRSFYRHVIFGPSLH 653 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc---------cccccccccccHHHHHhHHhhcCcccCCCCcccceeEeCCCcc
Confidence 2334444444444444444444333322 1245666677999999999999999999999999999999999
Q ss_pred CCCCCCcchhHHHHHHHHh-hhcchhcHHHHHHHHHHHHHHHHHHHHHhc
Q 005260 653 NDYGSKYFPAIDDAIEEAM-KLNTAKSWHTVQHEVWRVSRAVRHASLVLN 701 (705)
Q Consensus 653 ~~y~~~~fpgi~da~~~~~-~~~~~~~~~~~~~ql~~v~~~i~~a~~~l~ 701 (705)
+.| .||+|.||+...+ .....+.|.++|+||+++.++|++|+..|+
T Consensus 654 ~~~---~~~~v~~a~~~~~~~~~~~~~~~~v~~qi~~~~~~l~~aa~~l~ 700 (702)
T KOG2195|consen 654 NKY---SFPGVDDAIFPGDPDAISKEAWKRVQRQIALLGWTLQGAANTLS 700 (702)
T ss_pred ccc---cccchhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998 8999999999876 455567899999999999999999999997
No 2
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=100.00 E-value=1.8e-42 Score=345.95 Aligned_cols=203 Identities=46% Similarity=0.776 Sum_probs=174.6
Q ss_pred ccceEEecCCCCCCeEeeecccccCCCCCCCCCCccccccccCCCCcceEEeEEEecCCChhchHHHHhcCCcccceEEE
Q 005260 95 SRSLSLTRPPPQPPITFALRQEIYEGDPYADVADEVLPTFHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVL 174 (705)
Q Consensus 95 ~~~l~l~~~~g~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvl 174 (705)
..++.+..+++. ..++.|+....++ ...+.+++|++||++|+++|+|||||||+.+||+.|++.|++++|||||
T Consensus 3 ~~~~~~~~~~~~---~~~~~e~~~~~~~---~~~~~~~~f~a~s~sg~v~g~lVyvnyG~~~D~~~L~~~gvdv~GKIvL 76 (220)
T cd02121 3 KRSLILTKPDGA---TGKLIEDTVLEEP---PSPDVVPPFHAYSASGNVTAELVYANYGSPEDFEYLEDLGIDVKGKIVI 76 (220)
T ss_pred cccceeecCCCc---cccccccccccCC---CCccccccceecCCCCCceEEEEEcCCCcHHHHHHHhhcCCCCCCeEEE
Confidence 344455544332 1245555554333 1355789999999999999999999999999999999999999999999
Q ss_pred EEeCCCcchhHHHHHHHcCCeEEEEEecCCCCCCCCCC-CCcCCCCCCCCCCCceeeeee---cCCCCCCCCCCCCCCcc
Q 005260 175 ARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDD-ARWFPDDKWMPPSGVQVGSVY---DGTGDPTTPGWPSSEGC 250 (705)
Q Consensus 175 ~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~-~~~yP~~~~~p~~~v~rg~v~---~~~Gdp~tPg~ps~~~~ 250 (705)
+|+|.++++.|+++|+++||+|||+|+||.+++....+ +++||++||+|+++||||+|. +++|||+||||||.++.
T Consensus 77 vr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~ 156 (220)
T cd02121 77 ARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENGKTYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGA 156 (220)
T ss_pred EECCCccHHHHHHHHHHcCCEEEEEEeCchhcccccccccccCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999998776543 268999999999999999996 67899999999999999
Q ss_pred cccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcCCCCCCccccCCCCCCccccCCC
Q 005260 251 ERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGGEVANEDWQGDKDAPIYRVGPG 307 (705)
Q Consensus 251 ~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~~~~~~~~w~~~l~~~~y~~gp~ 307 (705)
+|++.++. ..+|+||++|||++||++||+.|+|+.+|.+|+|+++ ++|++||+
T Consensus 157 ~r~~~~~~---~~lP~IPs~PIS~~da~~lL~~L~g~~~p~~W~g~l~-~~y~~g~~ 209 (220)
T cd02121 157 ERRDKEES---KGLPKIPSLPISYRDAQPLLKALGGPGAPSDWQGGLP-VTYRLGFG 209 (220)
T ss_pred cccCcccc---cCCCCCCcccCCHHHHHHHHHHcCCCCCCccccCCCC-CceeeCCC
Confidence 99986443 4799999999999999999999999999999999998 99999875
No 3
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=100.00 E-value=1.3e-37 Score=301.04 Aligned_cols=164 Identities=37% Similarity=0.639 Sum_probs=147.1
Q ss_pred cccccCCCCcceEEeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCCCCCCCCC
Q 005260 132 PTFHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSD 211 (705)
Q Consensus 132 ~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~ 211 (705)
.+|++||++|+|+|++||||||+.+||++|++.|++++|||||+|||.++++.|+++|+++||+|||+|+||.|+..
T Consensus 18 ~~f~~~s~~G~v~g~lVyvn~G~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~--- 94 (183)
T cd02128 18 GGYVAYSAAGTVTGKLVYANYGRKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPI--- 94 (183)
T ss_pred ccccCCCCCCceEEEEEEcCCCCHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCc---
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999976532
Q ss_pred CCCcCCCCCCCCCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcCCCCCCc
Q 005260 212 DARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGGEVANE 291 (705)
Q Consensus 212 ~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~~~~~~~ 291 (705)
.+++++|||+++++.|||+||||||.++. +++..+. ..+|+||++|||+++|++||+.|+|+.+|.
T Consensus 95 ----------~~~~~~~~g~~~~~~GDplTPG~ps~~~~-~~~~~~~---~~lP~IPs~PIS~~da~~lL~~l~G~~~p~ 160 (183)
T cd02128 95 ----------DPSETALFGHVHLGTGDPYTPGFPSFNHT-QFPPSQS---SGLPNIPAQTISAAAAAKLLSKMGGPVCPS 160 (183)
T ss_pred ----------ccCcceeecceeccCCCcCCCCCcccccc-ccCcccc---cCCCCCCEeccCHHHHHHHHHHcCCCCCCc
Confidence 23568999999888999999999999876 4655543 369999999999999999999999999999
Q ss_pred cccCCCCCCccccCCCC-eEEEEE
Q 005260 292 DWQGDKDAPIYRVGPGP-GVVNLS 314 (705)
Q Consensus 292 ~w~~~l~~~~y~~gp~~-~~v~l~ 314 (705)
+|||+ + ++|++||+. .+|+|+
T Consensus 161 ~w~g~-~-~~y~~Gp~~~~~v~~~ 182 (183)
T cd02128 161 GWKGG-D-STCRLGTSSSKNVKLT 182 (183)
T ss_pred cccCC-C-cCEeeCCCCCceEEEe
Confidence 99999 5 999999984 346665
No 4
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=100.00 E-value=2.2e-36 Score=279.79 Aligned_cols=136 Identities=30% Similarity=0.451 Sum_probs=120.3
Q ss_pred cccccccCCCCcceEEeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCCCCCCC
Q 005260 130 VLPTFHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGG 209 (705)
Q Consensus 130 ~~~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~ 209 (705)
++++|++||++|+|+|++||||||+.+||++|++ +|+|+|||||+|||+++||.|+++|+++||+|||||+||.|++..
T Consensus 2 ~~p~f~aYS~sG~Vtg~~VYvNyG~~eDf~~L~~-~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~ 80 (153)
T cd02131 2 LLYSYAAYSAKGTLQAEVVDVQYGSVEDLRRIRD-NMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKT 80 (153)
T ss_pred CcCccceeCCCCceEEEEEEecCCCHHHHHHHHh-CCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCc
Confidence 5688999999999999999999999999999997 699999999999999999999999999999999999999988642
Q ss_pred CCCCCcCCCCCCCCCCCceeeeeecC-CCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcC
Q 005260 210 SDDARWFPDDKWMPPSGVQVGSVYDG-TGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIG 285 (705)
Q Consensus 210 ~~~~~~yP~~~~~p~~~v~rg~v~~~-~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~ 285 (705)
. ++| .++|| +.+. .|||+||||||.++++|++.+ .+|+||++|||++||.+||++-.
T Consensus 81 ~--------~~~---~~v~~--v~~~~~GDP~TPG~PS~~~~~R~~~~------~lP~IPs~PIS~~dA~~lL~~~~ 138 (153)
T cd02131 81 R--------HTW---HQAFM--VSLNPGGDPSTPGYPSADQSCRQCRG------NLTSLLVQPISAYLAKKLLSAPP 138 (153)
T ss_pred C--------CCc---cceEE--EecCCCCCCCCCCCccccCcccCCcC------CCCCCcccccCHHHHHHHHhCCc
Confidence 2 123 16665 5444 499999999999999998753 68999999999999999998753
No 5
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.95 E-value=3.4e-28 Score=239.50 Aligned_cols=160 Identities=31% Similarity=0.449 Sum_probs=117.7
Q ss_pred cEEEEeeccCC--------cCCCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHHh
Q 005260 339 RLVILGNHRDA--------WTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREM 410 (705)
Q Consensus 339 ~~ViigaH~Ds--------~~~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~ 410 (705)
++|||+||+|| +..||+||+||+|+|||+||.|+++. .+|+|+|+|++|+|||.|+.||++|++ +...
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~---~~~~~~i~fv~~~~EE~gl~GS~~~~~-~~~~ 76 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELK---PQPKRTIRFVFFDGEEQGLLGSRAFVE-HDHE 76 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHST---HSSSEEEEEEEESSGGGTSHHHHHHHH-HHHC
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhh---cccCccEEEEEecccccCccchHHHHH-hhhc
Confidence 58999999999 55699999999999999999999843 478999999999999999999999999 4556
Q ss_pred hhccEEEEEEccCcccC-CccccccChhH----HHHHHHHHHHcCCCCCCccchhhccccCCCCCccccCCCCCCchHHH
Q 005260 411 LASRAVAYLNIDSAVHE-AGFHASATPQL----DELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAF 485 (705)
Q Consensus 411 l~~~~va~iNlD~~g~g-~~l~~~~sp~l----~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~g~~~SD~~~F 485 (705)
+.+++.++||+||+|.+ ..+.....+.+ ...+.+..+.+.. .+... ........ .+|||.||
T Consensus 77 ~~~~~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------~~~~~~~~-~~sD~~~F 143 (179)
T PF04389_consen 77 ELDNIAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYGS------SLGPD------VPPEKPTF-GGSDHYPF 143 (179)
T ss_dssp HHHHEEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHHC------HTSSE------CEEEESST-TSSTCHHH
T ss_pred ccccceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhhc------ccccc------cccccCCC-CCCCcHhh
Confidence 77999999999999998 55666666543 3333333222110 00000 01112333 78999999
Q ss_pred HhcCCceEEEeeeCC-CCCCCCCCccchHHHH
Q 005260 486 IQHIGVPVADMSFGT-GYPVYHSMYDDFIWME 516 (705)
Q Consensus 486 ~~~~GIPs~~l~~~~-~~p~yHt~~Dt~~~l~ 516 (705)
.. .|||++.+.... .++.|||..||+++++
T Consensus 144 ~~-~gip~~~~~~~~~~~~~~Ht~~Dt~~~~~ 174 (179)
T PF04389_consen 144 SK-AGIPAVTLSSTDGYNPYYHTPEDTPDNLD 174 (179)
T ss_dssp HT-TT-EEEEEEESSSSGTTTTSTT-SGGGC-
T ss_pred hc-CCEeEEEEEecCCCCCCCCCcccChhhcC
Confidence 97 799999998876 6789999999999875
No 6
>PF04253 TFR_dimer: Transferrin receptor-like dimerisation domain; InterPro: IPR007365 This entry represents the dimerisation domain found in the transferrin receptor, as well as in a number of other proteins including glutamate carboxypeptidase II and N-acetylated-alpha-linked acidic dipeptidase like protein. The transferrin receptor (TfR) assists iron uptake into vertebrate cells through a cycle of endo- and exocytosis of the iron transport protein transferrin (Tf). TfR binds iron-loaded (diferric) Tf at the cell surface and carries it to the endosome, where the iron dissociates from Tf. The apo-Tf remains bound to TfR until it reaches the cell surface, where apo-Tf is replaced by diferric Tf from the serum to begin the cycle again. Human TfR is a homodimeric type II transmembrane protein. The crystal structure of a TfR monomer reveals a 3-domain structure: a protease-like domain that closely resembles carboxy- and amino-peptidases; an apical domain consisting of a beta-sandwich; and a helical dimerisation domain. The dimerisation domain consists of a 4-helical bundle that makes contact with each of the three domains in the dimer partner [].; PDB: 3FF3_A 3FEC_A 3FED_A 3FEE_A 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A ....
Probab=99.94 E-value=2.3e-27 Score=220.02 Aligned_cols=125 Identities=42% Similarity=0.679 Sum_probs=104.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHhccCCCCCCCCCCCceEEecCCC
Q 005260 572 GISLIPLFKSIEELAKAAAKIDNEKKELQKAKGWASTWKKDQYKVRELNDRLMMAERAFTDRDGLSGRPWYKHLIYAPSK 651 (705)
Q Consensus 572 ~~~~~~l~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~l~~~er~fl~~~glp~r~~~khv~~~p~~ 651 (705)
.++|++|.+++.+|+++|++|+..++.++... ..+.+...+|++|+|||.+||+||++.|+|+|||||||||||+.
T Consensus 1 ~l~l~~L~~ai~~~~~aa~~f~~~~~~~~~~~----~~~~~~~~~r~~N~~L~~~Er~Fl~~~Glp~r~~~kHvifap~~ 76 (125)
T PF04253_consen 1 NLDLDPLKKAISKFKKAAKEFQEWIKSWDEIV----GIEPDPLAVRRLNDRLMQFERAFLDPRGLPGRPWYKHVIFAPGR 76 (125)
T ss_dssp T--SHHHHHHHHHHHHHHHHHHHHHHHS----------TT-HHHHHHHHHHHHHHHHCTB-TTSBTTBTT--BSSEEEET
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cccCCHHHHHHHHHHHHHHHHHHhCcCCCCCCcccceeeeCCCC
Confidence 37899999999999999999999998876321 11246889999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhHHHHHHHHhhhcchhcHHHHHHHHHHHHHHHHHHHHHhccc
Q 005260 652 HNDYGSKYFPAIDDAIEEAMKLNTAKSWHTVQHEVWRVSRAVRHASLVLNGK 703 (705)
Q Consensus 652 ~~~y~~~~fpgi~da~~~~~~~~~~~~~~~~~~ql~~v~~~i~~a~~~l~~~ 703 (705)
+++|++++||||+|||...+.... |+.+|+||++++.+|++|++.|++.
T Consensus 77 ~~~y~~~~fPgI~dai~~~~~~~~---~~~~~~~i~~v~~~i~~Aa~~L~~~ 125 (125)
T PF04253_consen 77 WNGYASWTFPGIRDAIEDKDSSKD---WEEAQKQISRVAKAIQNAANTLSDE 125 (125)
T ss_dssp TEEEEEEESHHHHHHHTTGGGTST---HHHHHHHHHHHHHHHHHHHHHCSS-
T ss_pred CCCCcCcccHHHHHHHHhcccCch---HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999998865443 9999999999999999999999863
No 7
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.94 E-value=3.9e-25 Score=226.76 Aligned_cols=356 Identities=23% Similarity=0.188 Sum_probs=251.1
Q ss_pred HHHHHhhcC-CCCCCCHhhHHHHHHHHHHHHHCCCceeeeEEEEEEeeeCccceEEecCCCCCCeEeeecccccCCCCCC
Q 005260 46 HHLHTLTRR-PHVAGSEANAEAAAYVLSVFTSCSLESHIASYGVSLTYPVSRSLSLTRPPPQPPITFALRQEIYEGDPYA 124 (705)
Q Consensus 46 ~~L~~lss~-~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~y~v~~~~P~~~~l~l~~~~g~~~~~~~l~e~~~~~~~~~ 124 (705)
..++.+... .-.+|++|+..+.++|+..+++.-...++.++.|+.|.-.+..++.-+ + .
T Consensus 4 ~y~k~~~ayg~li~g~~ger~~v~~vrafLe~~~v~~rL~p~~VlaWe~~e~~le~~~---~------~----------- 63 (486)
T COG4882 4 LYSKLKGAYGWLIVGAGGERGAVEVVRAFLEESLVSSRLHPFWVLAWELRESGLEPAA---S------W----------- 63 (486)
T ss_pred HHHHHhhhccceeecCCCchhHHHHHHHHHhccccceeeeeeeeehhhhHhhccCcch---h------h-----------
Confidence 334444433 468999999999999999999887667999999998876554443211 0 0
Q ss_pred CCCCccccccccCCCCcceEEeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCcchh--HHHHHHHcCCeEEEEEec
Q 005260 125 DVADEVLPTFHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGD--IVHNAFEAGAAGALIFTD 202 (705)
Q Consensus 125 ~~~~~~~~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvl~~~g~~~~~~--k~~~A~~~GA~gvi~~~d 202 (705)
+.....+||-+|+++|.+|..+ .|+.|+|++.+..+.-... -+..|.++||.|+||=++
T Consensus 64 -----i~ai~~PYsls~~IEgr~v~~~--------------gD~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~ 124 (486)
T COG4882 64 -----ISAIVGPYSLSGDIEGRPVVLE--------------GDAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESR 124 (486)
T ss_pred -----hhhcccccccccccccceeccc--------------CCCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecC
Confidence 1112467999999999999652 4899999999976532222 357899999999999876
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHH
Q 005260 203 RKDYGGGSDDARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMR 282 (705)
Q Consensus 203 p~~~~~~~~~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~ 282 (705)
+.. | .| ..|| |.++ .+ ..+++||++.+...+...+-.
T Consensus 125 ~~r-----------------------r-iV--~~Gd-----~gy~-----~~-------s~PtPIPva~v~en~~~y~~~ 161 (486)
T COG4882 125 DPR-----------------------R-IV--TGGD-----WGYS-----VS-------SSPTPIPVAVVPENYSRYAEE 161 (486)
T ss_pred Cce-----------------------e-EE--eccc-----cccc-----CC-------CCCCCcceEEeccCcchhhcc
Confidence 521 1 11 1233 2221 11 247899998886555443321
Q ss_pred HcCCCCCCccccCCCCCCccccCCCCeEEEEEEeeeeeeeeeeeEEEEecCCCCCCcEEEEeeccCCcCCCCCCChhHHH
Q 005260 283 SIGGEVANEDWQGDKDAPIYRVGPGPGVVNLSYTGEYVMATIQNVIGIIPGTEEPDRLVILGNHRDAWTFGAVDPNSGTA 362 (705)
Q Consensus 283 ~l~~~~~~~~w~~~l~~~~y~~gp~~~~v~l~~~~~~~~~~~~NVia~i~G~~~p~~~ViigaH~Ds~~~GA~DnaSG~A 362 (705)
..+++|.++...+.+.++|+|+.-.|. +.+|+++||+|||..|+.||..|++
T Consensus 162 -------------------------~~rvrl~vD~~~~~ty~y~~Ia~~~~e---n~vv~i~AH~DHW~~G~tDN~lg~~ 213 (486)
T COG4882 162 -------------------------AGRVRLWVDACVERTYDYNVIAVDGGE---NGVVLIGAHLDHWYTGFTDNILGVA 213 (486)
T ss_pred -------------------------ceeEEEEEecccceeEEEEEEEecCCC---CCceEEeechhhhhhcccchhhhHH
Confidence 236888888877778999999987664 6799999999999999999999999
Q ss_pred HHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCC---------CChHHHHHHHHHhhhccEEEEEEccCcccCCccccc
Q 005260 363 ALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGL---------IGSTEWVEENREMLASRAVAYLNIDSAVHEAGFHAS 433 (705)
Q Consensus 363 ~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl---------~GS~~~~~~~~~~l~~~~va~iNlD~~g~g~~l~~~ 433 (705)
..+++++.|..- ...+-+++|++||.|+ .||+.|+++... .+.+.+|||+|.+|.+ .+.+.
T Consensus 214 ~AV~~~~~lr~~-------~~~~~lv~FtAEE~g~p~~~sfyWa~GSr~~lk~~k~--~~~v~~~VN~Dv~g~~-~lv~~ 283 (486)
T COG4882 214 QAVETAGRLRGR-------GLAAGLVVFTAEEHGMPGMASFYWAAGSRGLLKESKA--AEEVEAYVNFDVAGYR-CLVAS 283 (486)
T ss_pred HHHHHHHHHhhc-------CcceeEEEEeccccCCCCCcceeecccchHHHhhcCC--chhhhheecccccccc-chhhh
Confidence 999999877532 3556789999999875 599999988754 3678899999999886 67788
Q ss_pred cChhHHHHHHHHHHHcCCCCCCccchhhccccCCCCCccccCCCCCCchHHHHhcCCceEEEeeeCC---CCCCCCCCcc
Q 005260 434 ATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQHIGVPVADMSFGT---GYPVYHSMYD 510 (705)
Q Consensus 434 ~sp~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~g~~~SD~~~F~~~~GIPs~~l~~~~---~~p~yHt~~D 510 (705)
+.|.|..+..+..+.+ +.... ..+|...+.. .|||++.+..-+ ...+|||+.|
T Consensus 284 ~~P~L~e~~~~~g~~~----------------------vespe-~y~Ds~~y~~-aGiPS~Ti~SL~~~~~~e~yh~p~D 339 (486)
T COG4882 284 GAPQLVEHALEAGAVE----------------------VESPE-PYCDSIMYAW-AGIPSLTIHSLWCPGVQEAYHTPRD 339 (486)
T ss_pred cChHHHHHHHHhCCce----------------------ecCCC-cccchhhhhh-cCCCeeEeeeccCCCccceecCCCC
Confidence 9999988877664311 11111 4457777776 799999997643 3458999999
Q ss_pred chHHHHhhCCcchHHHHHHHHHHHHHHHHhCCCCCCCCChhhHHHHHH
Q 005260 511 DFIWMEKFGDPTFQRHVAAASMWGLVALQLADEEFLPFNYLSYAFELQ 558 (705)
Q Consensus 511 t~~~l~~~~dp~~~~~~~~a~~~~~l~~~La~~~~lP~d~~~y~~~l~ 558 (705)
|..-+++ +-.+..++.++++..+-|- ...+.+.|.
T Consensus 340 tpa~~~n------------~~t~~d~a~r~v~~~ie~p-th~~R~~l~ 374 (486)
T COG4882 340 TPASWDN------------AWTAVDAAVRTVTRGIEWP-THHFRSSLS 374 (486)
T ss_pred CchhHHH------------HHHHHHHHHHHHhcCCCCC-CHHHHhhhc
Confidence 9865542 1234455666665443322 444444443
No 8
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.92 E-value=2.2e-24 Score=229.08 Aligned_cols=204 Identities=18% Similarity=0.225 Sum_probs=147.1
Q ss_pred eeeeEEEEecCCCCCCcEEEEeeccCCcC----------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEE
Q 005260 323 TIQNVIGIIPGTEEPDRLVILGNHRDAWT----------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIV 386 (705)
Q Consensus 323 ~~~NVia~i~G~~~p~~~ViigaH~Ds~~----------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~ 386 (705)
+..||||.++|.. ++.||++||+||+. .||+||++|+|+|||+||.|.+. +++++|+
T Consensus 96 ~g~nVIa~~~G~~--~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~-----~~~~~I~ 168 (346)
T PRK10199 96 TGSTVIAAHEGKA--PQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV-----PTEYGIR 168 (346)
T ss_pred ccceEEEEECCCC--CCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC-----CCCCcEE
Confidence 4579999999964 57899999999974 39999999999999999999754 5789999
Q ss_pred EEEeCCccCCCCChHHHHHHHHHhhhccEEEEEEccCcccCCccccc-c--Ch-hHH----HHHHHHHHHcCCCCCCccc
Q 005260 387 LCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVHEAGFHAS-A--TP-QLD----ELLKQAAKQVQDPDNSSQT 458 (705)
Q Consensus 387 Fv~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g~g~~l~~~-~--sp-~l~----~l~~~~~~~v~~p~~~~~~ 458 (705)
|+++++||.|+.||.+|+++......++++++||+||++.+..+.+. + ++ .+. +.+.++++....+
T Consensus 169 fv~~~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~d~~~~~~g~~~~~~~~~~~~d~~~~~a~~~g~~------ 242 (346)
T PRK10199 169 FVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVNTPEAVRKLTRDRALAIARRHGIA------ 242 (346)
T ss_pred EEEECCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCCCceEEecCCCcHHHHhHHHHHHHHHHHHHcCCc------
Confidence 99999999999999999998665566899999999999887544332 2 22 222 2233444433211
Q ss_pred hhhccccCCCCCc-cccCCCCCCchHHHHhcCCceEEEeeeCC----------------CC---CCCC-CCccchHHHHh
Q 005260 459 IYDSWTGSSNSPV-IGRLGGGGSDYAAFIQHIGVPVADMSFGT----------------GY---PVYH-SMYDDFIWMEK 517 (705)
Q Consensus 459 l~~~~~~~~~~~~-~~~~g~~~SD~~~F~~~~GIPs~~l~~~~----------------~~---p~yH-t~~Dt~~~l~~ 517 (705)
+... ..+... ....+ .+|||.||.+ .|||++.+..++ .+ ..|| |.+|++++|++
T Consensus 243 ~~~~---~~~~~~~p~g~~-~rSDH~~F~~-~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~ 317 (346)
T PRK10199 243 ATTN---PGLNKNYPKGTG-CCNDAEVFDK-AGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDK 317 (346)
T ss_pred cccC---CCccccccCCCc-CCcccHHHHh-cCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHH
Confidence 1000 000000 01233 7899999998 799999996542 11 2789 79999999986
Q ss_pred hCCcc-hHHHHHHHHHHHHHHHHhCCCC
Q 005260 518 FGDPT-FQRHVAAASMWGLVALQLADEE 544 (705)
Q Consensus 518 ~~dp~-~~~~~~~a~~~~~l~~~La~~~ 544 (705)
...-. -++.....+++..++.+||+..
T Consensus 318 ~~pgri~~~~~~~~~~~~~~~~~~~~~~ 345 (346)
T PRK10199 318 ALPGRIERRCRDVVRIMLPLVKELAKAS 345 (346)
T ss_pred hcchHHHHHHHhHHHHHHHHHHHHhccC
Confidence 54321 2445677889999999998753
No 9
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.82 E-value=1.1e-19 Score=207.55 Aligned_cols=226 Identities=25% Similarity=0.281 Sum_probs=173.0
Q ss_pred eeeeeeeEEEEecCCCCCCc-EEEEeeccCCcCC--CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCC
Q 005260 320 VMATIQNVIGIIPGTEEPDR-LVILGNHRDAWTF--GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYG 396 (705)
Q Consensus 320 ~~~~~~NVia~i~G~~~p~~-~ViigaH~Ds~~~--GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~G 396 (705)
.-..+.||+.+|.++..+++ .|++.||+||++. ||.|+++|+|+|||++|.+.+..+ ..+++|+|.+.++||.+
T Consensus 124 ~Y~~i~NIvVki~~k~~~~~~~lLlnaHfDSvpt~~gAtDDg~~va~mLe~lRv~s~~~~---~l~~~vVFLfNgaEE~~ 200 (834)
T KOG2194|consen 124 VYQNISNIVVKISPKNGNDKNALLLNAHFDSVPTGPGATDDGSGVASMLEALRVLSKSDK---LLTHSVVFLFNGAEESG 200 (834)
T ss_pred eeeeeeeEEEecCCCCCCccceeeeeccccccCCCCCCCcchhHHHHHHHHHHHhhcCCC---cccccEEEEecCcccch
Confidence 44778899999988776666 9999999999976 999999999999999999987632 23899999999999999
Q ss_pred CCChHHHHHHHHHhhhccEEEEEEccCcccC-CccccccChhHHHHHHHHHHHcCCCCCCccchhhccccCCCCCccccC
Q 005260 397 LIGSTEWVEENREMLASRAVAYLNIDSAVHE-AGFHASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRL 475 (705)
Q Consensus 397 l~GS~~~~~~~~~~l~~~~va~iNlD~~g~g-~~l~~~~sp~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~ 475 (705)
+.||..|+.+|+ +.+++.+.||||.+|+| ...-+++.|.- .+++...+.+++|-. +++.+..++.+..+
T Consensus 201 L~gsH~FItQH~--w~~~~ka~INLea~GsGGreiLFQagp~~-wl~k~Y~~~~phPf~--stlgee~Fq~g~Ip----- 270 (834)
T KOG2194|consen 201 LLGSHAFITQHP--WSKNIKAVINLEAAGSGGREILFQAGPNH-WLLKAYLQAAPHPFA--STLGEELFQSGIIP----- 270 (834)
T ss_pred hhhcccceecCh--hhhhhheEEeccccCcccceeEEecCCch-HHHHHHHhhCCCchh--hhhHHHhhhcCcCc-----
Confidence 999999999986 57899999999999998 66666777664 455555556667653 66666666554333
Q ss_pred CCCCCchHHHHhcCCceEEEeeeCCCCCCCCCCccchHHHHhhCCcchHHHHHHHHHHHHHHHHhCCCCCCCCC-h---h
Q 005260 476 GGGGSDYAAFIQHIGVPVADMSFGTGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLADEEFLPFN-Y---L 551 (705)
Q Consensus 476 g~~~SD~~~F~~~~GIPs~~l~~~~~~p~yHt~~Dt~~~l~~~~dp~~~~~~~~a~~~~~l~~~La~~~~lP~d-~---~ 551 (705)
+.+|+..|.++.|+|.+++.+...--.|||.+|.++.+ .|+-. +.++.-+..++..||++...--. + +
T Consensus 271 --SdTDfrif~eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i----~~gs~--q~tGen~L~~v~~lan~el~~~~~~~~g~ 342 (834)
T KOG2194|consen 271 --SDTDFRIFREYGHLPGLDMAFVKNGYVYHTKYDGIQYI----PPGSL--QHTGENILALVRSLANSELDNSTERSKGT 342 (834)
T ss_pred --cccchHHHHHhCCcccceeeeeeccceEEeeccccccc----Ccchh--hhhhhHHHHHHHHHhchhhccccccCCCc
Confidence 78999999999899999999865445899999999876 44433 33455666777888887221100 0 3
Q ss_pred hHHHHHHHHHHHHHH
Q 005260 552 SYAFELQKSTKDLEN 566 (705)
Q Consensus 552 ~y~~~l~~~~~~l~~ 566 (705)
-|.+.+..++-.+.+
T Consensus 343 vyfdv~g~~~~~y~~ 357 (834)
T KOG2194|consen 343 VYFDVVGKYFLAYSE 357 (834)
T ss_pred eehhhhhhhhheeeh
Confidence 466667666655443
No 10
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.76 E-value=5.8e-18 Score=189.85 Aligned_cols=168 Identities=27% Similarity=0.329 Sum_probs=121.5
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCC--CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChH
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF--GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGST 401 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~--GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~ 401 (705)
..++.+.+.+ ...+..+++++|+|+++. ||+||+||+|+|||+||.|+.. +|+|+|+|++|++||.|+.||.
T Consensus 195 ~~~~~~~~~~-~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~-----~p~~~v~f~~~~aEE~Gl~GS~ 268 (435)
T COG2234 195 SQIIEAIIGT-AHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN-----PPKRTVRFVAFGAEESGLLGSE 268 (435)
T ss_pred cccceEEEec-cCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC-----CCCceEEEEEecchhhcccccH
Confidence 3444444433 335899999999999554 9999999999999999999875 6999999999999999999999
Q ss_pred HHHHHHHHhhhccEEEEEEccCcccCC---ccccccC--hhHHHHHHHHHHHcCCCCCCccchhhccccCCCCCccccCC
Q 005260 402 EWVEENREMLASRAVAYLNIDSAVHEA---GFHASAT--PQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLG 476 (705)
Q Consensus 402 ~~~~~~~~~l~~~~va~iNlD~~g~g~---~l~~~~s--p~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~g 476 (705)
+|+.++...+.+++.++||+||+|... .+...++ +.....+.+.++.+..+... .......
T Consensus 269 ~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 334 (435)
T COG2234 269 AYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDP--------------STVQDFD 334 (435)
T ss_pred HHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhccc--------------cccCCCC
Confidence 999998876777888899999999852 2333322 22222333333322111110 0112333
Q ss_pred CCCCchHHHHhcCCceEEEeeeCCC-----CCCCCCCccchHH
Q 005260 477 GGGSDYAAFIQHIGVPVADMSFGTG-----YPVYHSMYDDFIW 514 (705)
Q Consensus 477 ~~~SD~~~F~~~~GIPs~~l~~~~~-----~p~yHt~~Dt~~~ 514 (705)
.+|||.||.. .|||++.+..... -+++||..|| +.
T Consensus 335 -~~sd~~~f~~-~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~ 374 (435)
T COG2234 335 -PRSDHYPFTE-AGIPSLFLFSGAPGGVEAVAWGHTAADT-DK 374 (435)
T ss_pred -CCCcchhhhh-cCCcceeeeecCCccccccccccccccc-cc
Confidence 8999999998 7999998876532 3589999997 64
No 11
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.56 E-value=1.6e-14 Score=134.37 Aligned_cols=104 Identities=22% Similarity=0.303 Sum_probs=82.8
Q ss_pred cccCCCCcceEEeEEEecCCChhchHHHHhcCCcccceEEEEEeCCC--cchhHHHHHHHcCCeEEEEEecCCCCCCCCC
Q 005260 134 FHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQI--FRGDIVHNAFEAGAAGALIFTDRKDYGGGSD 211 (705)
Q Consensus 134 ~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvl~~~g~~--~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~ 211 (705)
.++||++++++|++||+|+|+.+||+ +++++|||||++++.+ .+..|+.+|+++||+|||+|++....
T Consensus 14 ~~~~s~~~~~~~~lV~~g~G~~~d~~-----~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~----- 83 (127)
T cd04819 14 ALPRSPSGEAKGEPVDAGYGLPKDFD-----GLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGV----- 83 (127)
T ss_pred EcCCCCCCCeeEEEEEeCCCCHHHcC-----CCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCc-----
Confidence 36789999999999999999999997 8899999999999988 78899999999999999999753110
Q ss_pred CCCcCCCCCCCCCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcCC
Q 005260 212 DARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (705)
Q Consensus 212 ~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~~ 286 (705)
+ +.++.|...+ ...+.||++.||.+|+.+|+++++.
T Consensus 84 ----~----------------------~~~~~~~~~~-------------~~~~~IP~v~Is~edg~~L~~~l~~ 119 (127)
T cd04819 84 ----L----------------------PATGDEGTED-------------GPPSPIPAASVSGEDGLRLARVAER 119 (127)
T ss_pred ----C----------------------cccccccccC-------------CCCCCCCEEEEeHHHHHHHHHHHhc
Confidence 0 0111111100 1356899999999999999999863
No 12
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.55 E-value=2.9e-14 Score=150.31 Aligned_cols=177 Identities=23% Similarity=0.278 Sum_probs=112.5
Q ss_pred EEEEEEeeeeeeeeeeeEEEEecCCCCCCcEEEEeeccCCcCCCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEE
Q 005260 310 VVNLSYTGEYVMATIQNVIGIIPGTEEPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCN 389 (705)
Q Consensus 310 ~v~l~~~~~~~~~~~~NVia~i~G~~~p~~~ViigaH~Ds~~~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~ 389 (705)
..++.++++.+.......-..|+|.. ++.|++++|.||.. -|+||.||.++++++||.|.++ +++.|.+|+|
T Consensus 103 ~Y~V~IdS~l~~G~L~ygE~~ipG~s--~~EillsthiCHPs-mANdnLSG~~v~~~La~~L~~~-----~~rytYRflf 174 (386)
T PF09940_consen 103 EYEVVIDSTLEDGSLTYGEFVIPGES--DEEILLSTHICHPS-MANDNLSGPAVLTFLAKWLKQL-----PNRYTYRFLF 174 (386)
T ss_dssp EEEEEEEEEEES-EEEEEEEEE--SS--S-EEEEEEE----S--TTTTHHHHHHHHHHHHHHTTS-------SSEEEEEE
T ss_pred ceEEEEeeeecCCceeEEEEEecCCC--CCeEEEEEeccCcc-cccccccHHHHHHHHHHHHhcC-----CcCceEEEEE
Confidence 45666666666666666666789965 68899999999965 6999999999999999999876 5569999999
Q ss_pred eCCccCCCCChHHHHHHHHHhhhccEEEEEEccCcccCCccccccCh----hHHHHHHHHHHHcCCCCCCccchhhcccc
Q 005260 390 WDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVHEAGFHASATP----QLDELLKQAAKQVQDPDNSSQTIYDSWTG 465 (705)
Q Consensus 390 ~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g~g~~l~~~~sp----~l~~l~~~~~~~v~~p~~~~~~l~~~~~~ 465 (705)
.. +.+||-.|+.+|.+.+++++++-++|.++|....+....|+ ....++..+.+.... .-..++
T Consensus 175 ~P----eTIGsI~yLskn~~~l~~~v~~G~vLtcvGD~~~~syk~Sr~g~~~iDr~~~~vl~~~~~----~~~~~~---- 242 (386)
T PF09940_consen 175 VP----ETIGSITYLSKNLDELKKNVKAGLVLTCVGDDGAYSYKRSRRGNTLIDRAAAHVLKHSGP----NFKIYD---- 242 (386)
T ss_dssp E-----TTHHHHHHHHH-GGGGGG-EEEEEE--S--SSS-EEEE--TTSSSHHHHHHHHHHHHSSS-----EEEE-----
T ss_pred cc----ccHHHHHHHHHCHHHHhhheeeeEEEEEecCCCCcceecCCCCCcHHHHHHHHHHHhcCC----CceEec----
Confidence 98 68999999999999998889999999999976555444333 444555555444321 111221
Q ss_pred CCCCCccccCCCCCCchHHHHhcCC--ceEEEeeeC--CCCCCCCCCccchHHHH
Q 005260 466 SSNSPVIGRLGGGGSDYAAFIQHIG--VPVADMSFG--TGYPVYHSMYDDFIWME 516 (705)
Q Consensus 466 ~~~~~~~~~~g~~~SD~~~F~~~~G--IPs~~l~~~--~~~p~yHt~~Dt~~~l~ 516 (705)
+-..|||...|.. -| +|+..+.-+ +.||.|||..|+++.|+
T Consensus 243 ---------F~~~GsDERQfcS-PG~dLPv~~~~Rs~yg~ypEYHTS~Dnl~fi~ 287 (386)
T PF09940_consen 243 ---------FLPRGSDERQFCS-PGFDLPVGSLMRSKYGEYPEYHTSLDNLDFIS 287 (386)
T ss_dssp -----------S-SSTHHHHTS-TTT---EEEEESS-TT--TTTTBTTSSGGG--
T ss_pred ---------ccccCCCcceeec-CCcCCceeeeecccccCCcccccCCCccccCC
Confidence 1127899999988 57 899988754 46999999999998763
No 13
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.48 E-value=9.1e-13 Score=134.50 Aligned_cols=167 Identities=22% Similarity=0.307 Sum_probs=116.4
Q ss_pred cEEEEeeccCCcCC------CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHHhhh
Q 005260 339 RLVILGNHRDAWTF------GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLA 412 (705)
Q Consensus 339 ~~ViigaH~Ds~~~------GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~l~ 412 (705)
++|+++|++|+... ||+++.||.++||++|++|+++.+.--+++|.|.|++|.||.+|++||+.|+.+......
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 58999999999753 999999999999999999998843223568999999999999999999999998643222
Q ss_pred ------------ccEEEEEEccCcccCC--cccccc-----C---hhHHHHHHHHHHHcCCCCCCccchhhccccCCCCC
Q 005260 413 ------------SRAVAYLNIDSAVHEA--GFHASA-----T---PQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSP 470 (705)
Q Consensus 413 ------------~~~va~iNlD~~g~g~--~l~~~~-----s---p~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~ 470 (705)
++|-.+|.++.+|... .++++. . ..+.+++..+.+..... ...+.. . ..
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~---~~~~~~---~---~~ 151 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLASS---NIVIKK---A---SS 151 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhcccc---ccceec---c---cc
Confidence 4778889999888763 355541 1 13344444444322110 011100 0 00
Q ss_pred ccccCCCCCCchHHHHhcC-CceEEEeeeCC---CCCCCCCCccchHHHH
Q 005260 471 VIGRLGGGGSDYAAFIQHI-GVPVADMSFGT---GYPVYHSMYDDFIWME 516 (705)
Q Consensus 471 ~~~~~g~~~SD~~~F~~~~-GIPs~~l~~~~---~~p~yHt~~Dt~~~l~ 516 (705)
.-.++ +.|-...|++.. +||++.+.... .+++||+.+|+.++++
T Consensus 152 ~~~~L--PPsS~~sFLr~~~~i~~vVLtd~~~~f~N~~y~S~~D~~~ni~ 199 (234)
T PF05450_consen 152 SNPPL--PPSSLQSFLRKDPNIPGVVLTDHDSQFTNKYYNSILDDAENIN 199 (234)
T ss_pred CCCCC--CcchHHHHHccCCCCCEEEecCCCcccccCCccCcccChhhhc
Confidence 01223 456688899853 69999987543 2579999999999885
No 14
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.2e-12 Score=131.58 Aligned_cols=223 Identities=21% Similarity=0.239 Sum_probs=138.1
Q ss_pred CCCCCCcccCCHHHHHHHHHHcCCCCCCccccCCCCCCccccCCCCeEEEEEEeeeeeeeeeeeEEEEecCCCCCCcEEE
Q 005260 263 NVPLIPSLPISAKDGETIMRSIGGEVANEDWQGDKDAPIYRVGPGPGVVNLSYTGEYVMATIQNVIGIIPGTEEPDRLVI 342 (705)
Q Consensus 263 ~~p~IP~~~is~~~a~~Ll~~l~~~~~~~~w~~~l~~~~y~~gp~~~~v~l~~~~~~~~~~~~NVia~i~G~~~p~~~Vi 342 (705)
..|++|--+=+++..+-|.+.+..- +|.-..+.++. ..-.......|+|+++.... .++.+
T Consensus 61 lv~Rvpgs~g~~~vr~~i~~~l~~l----~w~ve~~~f~~-------------~tp~g~~~f~nii~tl~~~A--~r~lV 121 (338)
T KOG3946|consen 61 LVPRVPGSPGSRQVRRFIIQHLRNL----GWAVETDAFTD-------------NTPLGTRNFNNLIATLDPNA--SRYLV 121 (338)
T ss_pred hccccCCCCccHHHHHHHHHHHHhc----Cceeeeccccc-------------cCcceeeeeeeEEEecCCCc--chhee
Confidence 4788888888888888888877542 34332220000 11123456789999997664 68999
Q ss_pred EeeccCCcCC------CCCCChhHHHHHHHHHHHHHHhHH-cCCCCCCcEEEEEeCCcc--------CCCCChHHHHHHH
Q 005260 343 LGNHRDAWTF------GAVDPNSGTAALLEVAQRLNKLQK-RGWKPRRTIVLCNWDAEE--------YGLIGSTEWVEEN 407 (705)
Q Consensus 343 igaH~Ds~~~------GA~DnaSG~A~lLElAr~l~~l~~-~g~~p~rtI~Fv~~~~EE--------~Gl~GS~~~~~~~ 407 (705)
+.+|||+..+ ||.|.+.-||+||++||++.+... +--++.-++.++|||||| -.+.||++.++.+
T Consensus 122 lachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~~~ 201 (338)
T KOG3946|consen 122 LACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAAKW 201 (338)
T ss_pred eecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHHHH
Confidence 9999999754 999999999999999999987654 223678899999999998 3378999988874
Q ss_pred HHhh---------hccEEEEEEccCcccC-Cccc---cccChhHHHHHHHHHHH------cCCCCCCccchhhccccCCC
Q 005260 408 REML---------ASRAVAYLNIDSAVHE-AGFH---ASATPQLDELLKQAAKQ------VQDPDNSSQTIYDSWTGSSN 468 (705)
Q Consensus 408 ~~~l---------~~~~va~iNlD~~g~g-~~l~---~~~sp~l~~l~~~~~~~------v~~p~~~~~~l~~~~~~~~~ 468 (705)
.... .+++-..+=+|-.|.. +.|. -.++-.++.+ .+...+ +.+-.. -...|+
T Consensus 202 ~sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~t~~wF~Rl-~~iE~~l~~~g~l~s~r~-~~~~Fq------- 272 (338)
T KOG3946|consen 202 ESWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPNTDRWFHRL-QSIEGELALLGLLASHRL-PPRYFQ------- 272 (338)
T ss_pred hccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcchHHHHHHH-HHHHHHHHHHHHHHhccC-Cchhcc-------
Confidence 3321 1233333334444433 1111 1111111111 111110 110000 000111
Q ss_pred CCccccCCCCCCchHHHHhcCCceEEEeeeCCCCCCCCCCccchHHHH
Q 005260 469 SPVIGRLGGGGSDYAAFIQHIGVPVADMSFGTGYPVYHSMYDDFIWME 516 (705)
Q Consensus 469 ~~~~~~~g~~~SD~~~F~~~~GIPs~~l~~~~~~p~yHt~~Dt~~~l~ 516 (705)
+. ...+.-..||.||+. .|||++.+.......+|||+.|+..+++
T Consensus 273 -~~-~~~~~veDDHiPFlr-rgVPVLHlI~~pFPsvWHt~dD~e~nld 317 (338)
T KOG3946|consen 273 -PG-GLSSVVEDDHIPFLR-RGVPVLHLIPVPFPSVWHTPDDNERNLD 317 (338)
T ss_pred -cc-CccccccCCcchhhh-cCCceEEecCCCCcccccCccchhhcCC
Confidence 00 011225679999998 5999999886544449999999998874
No 15
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=99.36 E-value=1.4e-12 Score=121.49 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=63.1
Q ss_pred ccccccccCCCCcceEEeEEEecCCChhchHHHHh-cCCcccceEEEEEeCCC------------cchhHHHHHHHcCCe
Q 005260 129 EVLPTFHGYAKSGTVIGPVVYVNYGRVEDYVTLKE-MVVNVTGTVVLARYGQI------------FRGDIVHNAFEAGAA 195 (705)
Q Consensus 129 ~~~~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~-~gv~v~GkIvl~~~g~~------------~~~~k~~~A~~~GA~ 195 (705)
++++.+.+|+++|+++|+|||||||+.++...+.+ .++|++|||||++.+.+ .++.|+++|+++||+
T Consensus 8 d~~~~~~~~~~~g~v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~ 87 (137)
T cd04820 8 DLLIGASAAEPAASVEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAI 87 (137)
T ss_pred ceEeeccccCCCCCceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCe
Confidence 45666778899999999999999998543222222 28999999999999875 256899999999999
Q ss_pred EEEEEecCCCC
Q 005260 196 GALIFTDRKDY 206 (705)
Q Consensus 196 gvi~~~dp~~~ 206 (705)
|||+|+||.+.
T Consensus 88 aVIi~~d~~~~ 98 (137)
T cd04820 88 GMITLTTPRSE 98 (137)
T ss_pred EEEEEeCCccc
Confidence 99999998764
No 16
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.32 E-value=1e-11 Score=114.65 Aligned_cols=108 Identities=21% Similarity=0.294 Sum_probs=80.9
Q ss_pred ccccCCCCcceEEeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCCCCCCCCCC
Q 005260 133 TFHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDD 212 (705)
Q Consensus 133 ~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~ 212 (705)
+|.+++++++++|+|||++++..+.++.+...+.+++|||||++.|.|.+..|+.+|+++||+|+|+|++.....
T Consensus 7 ~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~----- 81 (122)
T cd04816 7 SYSPSTPPGGVTAPLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGG----- 81 (122)
T ss_pred eccCCCCCCCcEEEEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCcc-----
Confidence 477889999999999999876544333332236789999999999999999999999999999999998653110
Q ss_pred CCcCCCCCCCCCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcCC
Q 005260 213 ARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (705)
Q Consensus 213 ~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~~ 286 (705)
..+. .+++ .....||++.|+++++++|++.++.
T Consensus 82 ---------------~~~~----~~~~----------------------~~~~~iP~~~Is~~~G~~l~~~l~~ 114 (122)
T cd04816 82 ---------------TAGT----LGAP----------------------NIDLKVPVGVITKAAGAALRRRLGA 114 (122)
T ss_pred ---------------cccc----ccCC----------------------CCCCeeeEEEEcHHHHHHHHHHHcC
Confidence 0000 0111 0134799999999999999999863
No 17
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.26 E-value=3.8e-11 Score=110.89 Aligned_cols=100 Identities=29% Similarity=0.438 Sum_probs=77.7
Q ss_pred cccCCCCcceEEeEEEec-CCC-hhchHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCCCCCCCCC
Q 005260 134 FHGYAKSGTVIGPVVYVN-YGR-VEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSD 211 (705)
Q Consensus 134 ~~a~S~~G~v~g~lVyv~-~G~-~~D~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~ 211 (705)
.++|++.|+++|+|||++ .|+ ++||. .+++|||||++.|.|.+.+|+++|+++||+|||+|++..+.
T Consensus 13 ~~~~~~~~~~~g~lv~~~~~gC~~~~~~------~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~----- 81 (122)
T cd02130 13 AFTYSPAGEVTGPLVVVPNLGCDAADYP------ASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAG----- 81 (122)
T ss_pred ecccCCCCCcEEEEEEeCCCCCCcccCC------cCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCc-----
Confidence 478899999999999996 464 56774 47999999999999999999999999999999999764210
Q ss_pred CCCcCCCCCCCCCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcCC
Q 005260 212 DARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (705)
Q Consensus 212 ~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~~ 286 (705)
.. ++.++. ...+.||++.|+.++++.|++.++.
T Consensus 82 ---------------~~------------~~~~~~---------------~~~~~Ip~v~Is~~~G~~L~~~l~~ 114 (122)
T cd02130 82 ---------------GL------------SGTLGE---------------PSGPYVPTVGISQEDGKALVAALAN 114 (122)
T ss_pred ---------------cc------------ccccCC---------------CCCCEeeEEEecHHHHHHHHHHHhc
Confidence 00 011110 0134799999999999999998863
No 18
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=99.25 E-value=1.4e-11 Score=116.89 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=57.5
Q ss_pred ccCCCCcceEEeEEEecCCChh-chHHHHhcCCcccceEEEEEeCC------------------CcchhHHHHHHHcCCe
Q 005260 135 HGYAKSGTVIGPVVYVNYGRVE-DYVTLKEMVVNVTGTVVLARYGQ------------------IFRGDIVHNAFEAGAA 195 (705)
Q Consensus 135 ~a~S~~G~v~g~lVyv~~G~~~-D~~~L~~~gv~v~GkIvl~~~g~------------------~~~~~k~~~A~~~GA~ 195 (705)
+++|++|+++|+|||||||+.+ ++++....++||+|||||+..+. +.++.|+.+|+++||+
T Consensus 12 ~~~s~sg~vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (151)
T cd04822 12 FAFSRSGAVTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAA 91 (151)
T ss_pred eccCCCCCceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCe
Confidence 6778889999999999999843 22222234999999999996552 3456899999999999
Q ss_pred EEEEEecCCCC
Q 005260 196 GALIFTDRKDY 206 (705)
Q Consensus 196 gvi~~~dp~~~ 206 (705)
|||+|+||.+.
T Consensus 92 aVIv~~d~~~~ 102 (151)
T cd04822 92 AVIVVNGPNSH 102 (151)
T ss_pred EEEEEeCCccc
Confidence 99999998654
No 19
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.24 E-value=3.7e-11 Score=112.53 Aligned_cols=102 Identities=23% Similarity=0.396 Sum_probs=78.2
Q ss_pred cccCCCCcceEEeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCc-----chhHHHHHHHcCCeEEEEEecCCCCCC
Q 005260 134 FHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIF-----RGDIVHNAFEAGAAGALIFTDRKDYGG 208 (705)
Q Consensus 134 ~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvl~~~g~~~-----~~~k~~~A~~~GA~gvi~~~dp~~~~~ 208 (705)
|..+.+.|.++|+||+++-|. .||. +.+++|||||+++|.|. +.+|+++|+++||+|||||++..+.+
T Consensus 27 ~~s~~~~g~~tg~lv~~g~~g-~d~~-----~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g- 99 (139)
T cd04817 27 YASMPVTGSATGSLYYCGTSG-GSYI-----CGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAG- 99 (139)
T ss_pred ccccccCCcceEEEEEccCCC-cccc-----CCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCC-
Confidence 344567899999999998665 4775 67899999999999998 89999999999999999998642211
Q ss_pred CCCCCCcCCCCCCCCCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcCC
Q 005260 209 GSDDARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (705)
Q Consensus 209 ~~~~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~~ 286 (705)
.+.++ .|++. ....||++.|++++++.|+++|+.
T Consensus 100 ------------------~~~~~----lg~~~----------------------~~~~IP~v~is~~dG~~L~~~l~~ 133 (139)
T cd04817 100 ------------------LQNPF----LVDTN----------------------NDTTIPSVSVDRADGQALLAALGQ 133 (139)
T ss_pred ------------------ccccc----ccCCC----------------------CCceEeEEEeeHHHHHHHHHHhcC
Confidence 01111 12221 134899999999999999998853
No 20
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.14 E-value=1.7e-10 Score=109.65 Aligned_cols=93 Identities=27% Similarity=0.348 Sum_probs=76.0
Q ss_pred CCCcceEEeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCCCCCCCCCCCCcCC
Q 005260 138 AKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFP 217 (705)
Q Consensus 138 S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP 217 (705)
.+.+.+++++||+|+|..+||. +.+++||||||+.|.|.+..|+.+|+++||+|+|+|++.....
T Consensus 21 ~~~~~~~~~lv~~g~g~~~d~~-----~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~---------- 85 (143)
T cd02133 21 TDLLGKTYELVDAGLGTPEDFE-----GKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLI---------- 85 (143)
T ss_pred CCCCCcEEEEEEccCCchhccC-----CCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcc----------
Confidence 4567899999999999999997 6789999999999999888999999999999999998752100
Q ss_pred CCCCCCCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcC
Q 005260 218 DDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIG 285 (705)
Q Consensus 218 ~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~ 285 (705)
. + .+ .....||++.|+++++..|++.+.
T Consensus 86 ----------~----------~-~~-------------------~~~~~iP~v~Is~~dG~~L~~~l~ 113 (143)
T cd02133 86 ----------P----------G-TL-------------------GEAVFIPVVFISKEDGEALKAALE 113 (143)
T ss_pred ----------c----------c-cC-------------------CCCCeEeEEEecHHHHHHHHHHHh
Confidence 0 0 00 012368999999999999999885
No 21
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=99.13 E-value=9.9e-11 Score=109.81 Aligned_cols=65 Identities=28% Similarity=0.347 Sum_probs=55.1
Q ss_pred ccCCCCcceEEeEEEecCCCh------hchHHHHhcCCcccceEEEEEeCCC------------------cchhHHHHHH
Q 005260 135 HGYAKSGTVIGPVVYVNYGRV------EDYVTLKEMVVNVTGTVVLARYGQI------------------FRGDIVHNAF 190 (705)
Q Consensus 135 ~a~S~~G~v~g~lVyv~~G~~------~D~~~L~~~gv~v~GkIvl~~~g~~------------------~~~~k~~~A~ 190 (705)
+.+|.++.++|+||||+||.. +||+ ++||+|||||+..|.| ....|++.|+
T Consensus 12 ~~~~~~~~~~aelVfvGyGi~a~~~~~dDYa-----g~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~ 86 (142)
T cd04814 12 LNVDAVAIKDAPLVFVGYGIKAPELSWDDYA-----GLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAA 86 (142)
T ss_pred cCCCCccccceeeEEecCCcCCCCCChhhcC-----CCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHH
Confidence 345678889999999999965 4666 8999999999987765 2457999999
Q ss_pred HcCCeEEEEEecCC
Q 005260 191 EAGAAGALIFTDRK 204 (705)
Q Consensus 191 ~~GA~gvi~~~dp~ 204 (705)
++||+|||+|+++.
T Consensus 87 ~~GA~gvIii~~~~ 100 (142)
T cd04814 87 RHGAAGVLIVHELA 100 (142)
T ss_pred HCCCcEEEEEeCCC
Confidence 99999999999864
No 22
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.09 E-value=7.2e-10 Score=103.99 Aligned_cols=105 Identities=24% Similarity=0.254 Sum_probs=73.3
Q ss_pred cccCCCCcceEEeEEEecCCChhchHHHHhc-CCcccceEEEEEeCCC------cchhH-------HHHHHHcCCeEEEE
Q 005260 134 FHGYAKSGTVIGPVVYVNYGRVEDYVTLKEM-VVNVTGTVVLARYGQI------FRGDI-------VHNAFEAGAAGALI 199 (705)
Q Consensus 134 ~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~-gv~v~GkIvl~~~g~~------~~~~k-------~~~A~~~GA~gvi~ 199 (705)
|.+.++.++++|++|+++ ++.++++. +.+++|||||+..+.| ..+.| ...|+++||+|+|+
T Consensus 8 ~s~~t~~~gvta~vv~v~-----~~~~~~~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv 82 (134)
T cd04815 8 GSVATPPEGITAEVVVVK-----SFDELKAAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLI 82 (134)
T ss_pred CCCCCCCCCcEEEEEEEC-----CHHHHHhcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEE
Confidence 344556678999999996 22333333 5689999999999888 66777 79999999999999
Q ss_pred EecCCCCCCCCCCCCcCCCCCCCCCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHH
Q 005260 200 FTDRKDYGGGSDDARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGET 279 (705)
Q Consensus 200 ~~dp~~~~~~~~~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~ 279 (705)
++.....+ +.++++. +|.| ...+.||++.|+.+|+.+
T Consensus 83 ~s~~~~~~-------------~~~~~G~--------~~~~----------------------~~~~~IP~v~is~ed~~~ 119 (134)
T cd04815 83 RSIGTDSH-------------RSPHTGM--------MSYD----------------------DGVPKIPAAAISVEDADM 119 (134)
T ss_pred EecCcccC-------------CCCcCCc--------cccC----------------------CCCCCCCEEEechhcHHH
Confidence 98421100 0111111 0111 124679999999999999
Q ss_pred HHHHcCC
Q 005260 280 IMRSIGG 286 (705)
Q Consensus 280 Ll~~l~~ 286 (705)
|.++++.
T Consensus 120 L~r~l~~ 126 (134)
T cd04815 120 LERLAAR 126 (134)
T ss_pred HHHHHhC
Confidence 9999864
No 23
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.02 E-value=3.9e-10 Score=100.10 Aligned_cols=64 Identities=36% Similarity=0.441 Sum_probs=49.2
Q ss_pred CCCcceEEeEEEecCCChhch-HHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEe
Q 005260 138 AKSGTVIGPVVYVNYGRVEDY-VTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFT 201 (705)
Q Consensus 138 S~~G~v~g~lVyv~~G~~~D~-~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~ 201 (705)
|+.|+++++||+.+++...+. ......+.+++||||||+.|.|.+..|+.+|+++||+|+|+|+
T Consensus 1 ~~~~~~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~ 65 (101)
T PF02225_consen 1 SPSGTVTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYN 65 (101)
T ss_dssp ---EEEEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-
T ss_pred CCCCCEEEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEe
Confidence 578899999996655543322 2222347899999999999999999999999999999999998
No 24
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=98.98 E-value=2e-09 Score=114.15 Aligned_cols=191 Identities=18% Similarity=0.236 Sum_probs=125.9
Q ss_pred eeeeeeeEEEEec-CCC-----CCCcEEEEeeccCCcCC------CCCCChhHHHHHHHHHHHHHHhHH-cCCCCCCcEE
Q 005260 320 VMATIQNVIGIIP-GTE-----EPDRLVILGNHRDAWTF------GAVDPNSGTAALLEVAQRLNKLQK-RGWKPRRTIV 386 (705)
Q Consensus 320 ~~~~~~NVia~i~-G~~-----~p~~~ViigaH~Ds~~~------GA~DnaSG~A~lLElAr~l~~l~~-~g~~p~rtI~ 386 (705)
..-++.||.|++. |-. +.-+.|+|.||||+.+. ||+.||||+++|||+||.|+++.. ..-+++.++.
T Consensus 189 ~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLl 268 (555)
T KOG2526|consen 189 PSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLL 268 (555)
T ss_pred CCCccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEE
Confidence 3467789999997 432 23489999999999753 999999999999999999999973 2357899999
Q ss_pred EEEeCCccCCCCChHHHHHHHHHhhhccEEEEEEccCcccC-Cccc--cccChhHHHHHHHHHHHcCCCCCCccchhhc-
Q 005260 387 LCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVHE-AGFH--ASATPQLDELLKQAAKQVQDPDNSSQTIYDS- 462 (705)
Q Consensus 387 Fv~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g~g-~~l~--~~~sp~l~~l~~~~~~~v~~p~~~~~~l~~~- 462 (705)
|++.+|.-+++.|+..|++--...+.+++-..|.+|.+|.+ ..|. ++-.|.=..++.+..+.+..-.. .+. ++.
T Consensus 269 F~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dnt~i~qffr~l~svAe-k~~-~~v~ 346 (555)
T KOG2526|consen 269 FILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDNTVIAQFFRRLNSVAE-KKN-IEVV 346 (555)
T ss_pred EEEccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcchHHHHHHHHhhhhch-hcc-eEEE
Confidence 99999999999999999997777778899999999999988 5544 44445333333333332211100 011 110
Q ss_pred cccCCCCCccccCCCCCCchHHHHhcCCceEEEeeeCC--CCCCCCCCc-cchHHHH
Q 005260 463 WTGSSNSPVIGRLGGGGSDYAAFIQHIGVPVADMSFGT--GYPVYHSMY-DDFIWME 516 (705)
Q Consensus 463 ~~~~~~~~~~~~~g~~~SD~~~F~~~~GIPs~~l~~~~--~~p~yHt~~-Dt~~~l~ 516 (705)
......+-.-.++ .=.|--|.- .-+|++.++.-. ..|.-.+.. |+-..++
T Consensus 347 ~khkkInla~s~l---AWEHErFsi-kR~pAfTLS~l~Sprdp~rnsi~~d~rsrld 399 (555)
T KOG2526|consen 347 TKHKKINLASSRL---AWEHERFSI-KRMPAFTLSTLPSPRDPARNSILLDLRSRLD 399 (555)
T ss_pred EEeeeEeeccchh---hhhhhhhhh-hcccceeeccCCCCcchhhccccccchhhhh
Confidence 0000000000000 114666765 589999987643 234444544 6666554
No 25
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.91 E-value=4.1e-09 Score=100.84 Aligned_cols=58 Identities=33% Similarity=0.420 Sum_probs=47.9
Q ss_pred ceEEeEEEecCCCh------hchHHHHhcCCcccceEEEEEeCCCcc-------------------hhHHHHHHHcCCeE
Q 005260 142 TVIGPVVYVNYGRV------EDYVTLKEMVVNVTGTVVLARYGQIFR-------------------GDIVHNAFEAGAAG 196 (705)
Q Consensus 142 ~v~g~lVyv~~G~~------~D~~~L~~~gv~v~GkIvl~~~g~~~~-------------------~~k~~~A~~~GA~g 196 (705)
.++++|||||||.. +||+ |+||+|||||+..+.+.. ..|+..|.++||+|
T Consensus 21 ~~~~elVFvGyGi~ape~~~dDy~-----g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~g 95 (157)
T cd04821 21 LKDSPLVFVGYGIVAPEYGWDDYK-----GLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAG 95 (157)
T ss_pred cccCCEEEeccCccCcccCccccc-----CCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeE
Confidence 46899999999975 3665 999999999998665311 24999999999999
Q ss_pred EEEEecCC
Q 005260 197 ALIFTDRK 204 (705)
Q Consensus 197 vi~~~dp~ 204 (705)
||+++++.
T Consensus 96 vi~v~~~~ 103 (157)
T cd04821 96 ALIVHETE 103 (157)
T ss_pred EEEEeCCC
Confidence 99999864
No 26
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.90 E-value=6.5e-09 Score=95.98 Aligned_cols=97 Identities=36% Similarity=0.548 Sum_probs=74.9
Q ss_pred CCCcceEEeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCCCCCCCCCCCCcCC
Q 005260 138 AKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFP 217 (705)
Q Consensus 138 S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP 217 (705)
.+.|.++++++++++|++ |+. +.+++|||||++.|.|.+..|+.+|+++||+|+|+++++.+...
T Consensus 21 ~~~~~~~~~~~~C~~~~~-~~~-----~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~--------- 85 (126)
T cd00538 21 SPVGVVAGPLVGCGYGTT-DDS-----GADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGP--------- 85 (126)
T ss_pred CCccccccceEEEecCcc-ccc-----CCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCccc---------
Confidence 457788999999999987 554 67899999999999998889999999999999999987642100
Q ss_pred CCCCCCCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcC
Q 005260 218 DDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIG 285 (705)
Q Consensus 218 ~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~ 285 (705)
.... .+++ .....||++.|+.+++++|++.+.
T Consensus 86 ----------~~~~----~~~~----------------------~~~~~iP~~~is~~~g~~l~~~~~ 117 (126)
T cd00538 86 ----------QMGS----VGLE----------------------STDPSIPTVGISYADGEALLSLLE 117 (126)
T ss_pred ----------cccc----ccCC----------------------CCCCcEeEEEeCHHHHHHHHHHHh
Confidence 0000 0110 023479999999999999999985
No 27
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=98.78 E-value=1.8e-08 Score=112.16 Aligned_cols=81 Identities=26% Similarity=0.341 Sum_probs=71.9
Q ss_pred eeeeeEEEEecCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCC----
Q 005260 322 ATIQNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYG---- 396 (705)
Q Consensus 322 ~~~~NVia~i~G~~~p~~~ViigaH~Ds~~~-GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~G---- 396 (705)
..+.|++|+++|..+..+.|++|+|+|+++. |..|+..|+++.||++|.|.+ .|.+|+|+|.+++|..||-+
T Consensus 53 D~~gN~~~~~~g~~~~~~~i~~gsHlDtv~~gG~~dg~~Gv~~~le~~~~l~~---~~~~~~~~i~vi~~~~EEg~rf~~ 129 (406)
T TIGR03176 53 DDVGNLYGRLVGTEFPEETILTGSHIDTVVNGGNLDGQFGALAAWLAVDYLKE---KYGAPLRTVEVLSMAEEEGSRFPY 129 (406)
T ss_pred cCCCcEEEEecCCCCCCCeEEEeccccCCCCCCccCchhhHHHHHHHHHHHHH---cCCCCCCCeEEEEeccccCccCCc
Confidence 4558999999998755689999999999998 889999999999999999875 46699999999999999965
Q ss_pred -CCChHHHHH
Q 005260 397 -LIGSTEWVE 405 (705)
Q Consensus 397 -l~GS~~~~~ 405 (705)
++||+.|.-
T Consensus 130 ~~~Gs~~~~g 139 (406)
T TIGR03176 130 VFWGSKNIFG 139 (406)
T ss_pred ccccHHHHhC
Confidence 899999874
No 28
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=98.77 E-value=5.3e-08 Score=99.69 Aligned_cols=155 Identities=24% Similarity=0.271 Sum_probs=107.6
Q ss_pred ecCCCCCCcEEEEeeccCCcCCCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHHh
Q 005260 331 IPGTEEPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREM 410 (705)
Q Consensus 331 i~G~~~p~~~ViigaH~Ds~~~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~ 410 (705)
++|.. ++.|++++|.+| +.-|+||.||.|++.-+|.+|..+ +.+.+.+|++-. +.+||-.|+.++.+-
T Consensus 173 ~rg~~--~~eiLlst~lCH-PSmaNdn~SG~all~~lak~l~~~-----ktrysYRfvf~P----~TiGsi~wLsrnee~ 240 (435)
T COG4310 173 HRGTS--KDEILLSTYLCH-PSMANDNLSGLALLTFLAKALKSL-----KTRYSYRFVFAP----ETIGSIVWLSRNEEC 240 (435)
T ss_pred ccCCc--cceeeeeecccC-hhhccCccchHHHHHHHHHHHHhc-----cceeeEEEEecc----cccchhhhHhcchhH
Confidence 46764 678999999998 448999999999999999999876 668899999876 579999999999877
Q ss_pred hhccEEEEEEccCcccC--Cccc--cccChhHHHHHHHHHHHcCCCCCCccchhhccccCCCCCccccCCCCCCchHHHH
Q 005260 411 LASRAVAYLNIDSAVHE--AGFH--ASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFI 486 (705)
Q Consensus 411 l~~~~va~iNlD~~g~g--~~l~--~~~sp~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~g~~~SD~~~F~ 486 (705)
++ ++..-+-+-++|-| +++. ..+..+...+...+.+.- .+.-...+. +. .|||-..|.
T Consensus 241 lk-hvk~GlVlsClGD~g~~nykrtrrgna~iDki~~~tl~~~----~s~~~~~dF------------~p-~G~DERQf~ 302 (435)
T COG4310 241 LK-HVKHGLVLSCLGDGGGPNYKRTRRGNALIDKIALHTLKHC----GSNFKAADF------------LP-YGSDERQFC 302 (435)
T ss_pred Hh-hhhcceEEEEecCCCCccceeccccchHHHHHHHHHHhcC----CcCceeeec------------cc-CCCchhhcc
Confidence 64 77777777777765 3322 233434444443333321 111112221 22 678888887
Q ss_pred hcCC--ceEEEeeeC--CCCCCCCCCccchHHHH
Q 005260 487 QHIG--VPVADMSFG--TGYPVYHSMYDDFIWME 516 (705)
Q Consensus 487 ~~~G--IPs~~l~~~--~~~p~yHt~~Dt~~~l~ 516 (705)
. -| .|+..+.-+ +.++-|||..|+++.|.
T Consensus 303 s-Pg~NLpvg~~~Rs~yG~f~~YHtSaDnL~fi~ 335 (435)
T COG4310 303 S-PGFNLPVGGLQRSRYGDFDGYHTSADNLDFIS 335 (435)
T ss_pred C-CCcCCchhhhhHhhcCCCccccCccccccccC
Confidence 6 33 566555432 46899999999998774
No 29
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.73 E-value=4.7e-08 Score=89.24 Aligned_cols=79 Identities=25% Similarity=0.241 Sum_probs=60.4
Q ss_pred hhchHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCCCCCCCCCCCCcCCCCCCCCCCCceeeeeec
Q 005260 155 VEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFPDDKWMPPSGVQVGSVYD 234 (705)
Q Consensus 155 ~~D~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP~~~~~p~~~v~rg~v~~ 234 (705)
++||. ..+++|||+|++.|+|.+..|+.+|+.+||+|||||++..... | .+ .
T Consensus 35 ~~~~~-----~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~---------~-------~~----~--- 86 (120)
T cd02129 35 ASDVP-----PGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVP---------P-------SG----N--- 86 (120)
T ss_pred ccccC-----ccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCC---------C-------CC----C---
Confidence 46664 4589999999999999999999999999999999998742100 0 00 0
Q ss_pred CCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcC
Q 005260 235 GTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIG 285 (705)
Q Consensus 235 ~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~ 285 (705)
.|++ ....||++.|++++++.|++.++
T Consensus 87 -~~~~-----------------------~~v~IP~v~Is~~dG~~i~~~l~ 113 (120)
T cd02129 87 -RSEY-----------------------EKIDIPVALLSYKDMLDIQQTFG 113 (120)
T ss_pred -CCCC-----------------------cCCcccEEEEeHHHHHHHHHHhc
Confidence 0111 13489999999999999999875
No 30
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.70 E-value=6.4e-08 Score=89.85 Aligned_cols=101 Identities=18% Similarity=0.277 Sum_probs=70.0
Q ss_pred cceEEeEEEec--CCCh-hchHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCCCCCCCCCCCCcCC
Q 005260 141 GTVIGPVVYVN--YGRV-EDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFP 217 (705)
Q Consensus 141 G~v~g~lVyv~--~G~~-~D~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP 217 (705)
..+.|+||.+. +|+. .++ ..+++|||||++.|.|.+.+|+++|+++||+|||+|++....... . .+
T Consensus 15 ~~~~g~l~~~~p~~gC~~~~~------~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~--~---~~ 83 (126)
T cd02126 15 KAGVGRVVKAKPYRACSEITN------AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSD--T---AP 83 (126)
T ss_pred CCceEEEEeCCchhcccCCCC------ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCcccc--c---cc
Confidence 34678999884 6663 333 346899999999999999999999999999999999764321000 0 00
Q ss_pred CCCCCCCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcCC
Q 005260 218 DDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (705)
Q Consensus 218 ~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~~ 286 (705)
| + .-.|++.+ .....||++.|+..++..|++.+..
T Consensus 84 ---~----------~-~m~~~~~~--------------------~~~~~IP~v~I~~~dG~~L~~~l~~ 118 (126)
T cd02126 84 ---M----------F-AMSGDGDS--------------------TDDVTIPVVFLFSKEGSKLLAAIKE 118 (126)
T ss_pred ---e----------e-EeecCCCC--------------------CCCCeEEEEEEEHHHHHHHHHHHHh
Confidence 0 0 00122200 0135899999999999999999864
No 31
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=98.63 E-value=1.2e-07 Score=105.49 Aligned_cols=81 Identities=32% Similarity=0.400 Sum_probs=70.6
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccC-----CC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEY-----GL 397 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~-GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~-----Gl 397 (705)
..||+|+++|...+.+.|++++|+|+++. |..|+..|++++|++++.|++ .|.+|+++|.|++|..||. |+
T Consensus 53 ~~nl~a~~~g~~~~~~~l~~~~H~DtV~~gg~~dg~~gvaa~l~a~~~l~~---~g~~~~~~i~~~~~~dEE~~~f~~~~ 129 (401)
T TIGR01879 53 VGNLIGRKEGTEPPLEVVLSGSHIDTVVNGGNFDGQLGVLAGIEVVDALKE---AYVVPLHPIEVVAFTEEEGSRFPYGM 129 (401)
T ss_pred CCcEEEEecCCCCCCCEEEEecccccCCCCCccCCHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEEeCCcCcCccccc
Confidence 36999999987643589999999999987 889999999999999998765 4678999999999999996 78
Q ss_pred CChHHHHHHH
Q 005260 398 IGSTEWVEEN 407 (705)
Q Consensus 398 ~GS~~~~~~~ 407 (705)
.||..|+.+.
T Consensus 130 ~Gs~~~~~~~ 139 (401)
T TIGR01879 130 WGSRNMVGLA 139 (401)
T ss_pred ccHHHHhccc
Confidence 9999987643
No 32
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.60 E-value=2.7e-07 Score=87.23 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=68.8
Q ss_pred CcceEEeEEEec--CCChhchHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCCCCCCCCCCCCcCC
Q 005260 140 SGTVIGPVVYVN--YGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFP 217 (705)
Q Consensus 140 ~G~v~g~lVyv~--~G~~~D~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP 217 (705)
.+.+++++|.++ .|+.. + ..+++|||||++.|.|.+..|+.+|+++||+|||+|++.... ++
T Consensus 35 ~~~~~~~lv~~~~~~gC~~-~------~~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~---------~~ 98 (139)
T cd02132 35 DNANKTRAVLANPLDCCSP-S------TSKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEEL---------YK 98 (139)
T ss_pred cCccEEEEEECCcccccCC-C------CcccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcc---------cc
Confidence 356889999875 55543 1 137999999999999999999999999999999999764210 00
Q ss_pred CCCCCCCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcCC
Q 005260 218 DDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (705)
Q Consensus 218 ~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~~ 286 (705)
+ .+|+... .....||++.|+++++..|++.+..
T Consensus 99 ------------------~-----~~~~~~~-------------~~~~~IP~v~Is~~~G~~L~~~l~~ 131 (139)
T cd02132 99 ------------------M-----VCEDNDT-------------SLNISIPVVMIPQSAGDALNKSLDQ 131 (139)
T ss_pred ------------------c-----ccCCCCC-------------CCCCcEeEEEecHHHHHHHHHHHHc
Confidence 0 0010000 1135899999999999999999863
No 33
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=98.59 E-value=1.3e-07 Score=109.97 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=72.3
Q ss_pred eeeeeEEEEecCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccC-----
Q 005260 322 ATIQNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEY----- 395 (705)
Q Consensus 322 ~~~~NVia~i~G~~~p~~~ViigaH~Ds~~~-GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~----- 395 (705)
..+.||+|+++|.+.+.+.|++|+|+|+++. |..|+..|+++.||++|.|.+ .|.+|+++|.|+.|.+||-
T Consensus 235 D~~gNv~~~~~g~~~~~p~v~~gSHlDTV~~gG~~DG~~Gv~a~l~~~~~l~~---~~~~~~~~i~vi~~~~EEg~rF~~ 311 (591)
T PRK13799 235 DAVGNVVGRYKAADDDAKTLITGSHYDTVRNGGKYDGREGIFLAIACVKELHE---QGERLPFHFEVIAFAEEEGQRFKA 311 (591)
T ss_pred CCCCCEEEEcCCCCCCCCeEEEeccccccCCCCccccHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEecCCCccCCCc
Confidence 4569999999998655689999999999987 999999999999999999875 4789999999999999995
Q ss_pred CCCChHHHHH
Q 005260 396 GLIGSTEWVE 405 (705)
Q Consensus 396 Gl~GS~~~~~ 405 (705)
+++||..|+-
T Consensus 312 ~~~GS~~~~G 321 (591)
T PRK13799 312 TFLGSGALIG 321 (591)
T ss_pred cccchHHHhC
Confidence 7899999874
No 34
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=98.55 E-value=2.2e-07 Score=108.27 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=70.3
Q ss_pred eeeeeEEEEecCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccC-----
Q 005260 322 ATIQNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEY----- 395 (705)
Q Consensus 322 ~~~~NVia~i~G~~~p~~~ViigaH~Ds~~~-GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~----- 395 (705)
..+.||+|+++|..+..+.|++|+|+|++.. |..|+..|++++||++|.|.+ .|.+|+++|.|++|.+||-
T Consensus 235 D~~GNl~~~~~g~~~~~~~v~~gsHlDTV~~gG~~DG~~Gv~a~lea~~~l~~---~~~~~~~~i~vv~~~~EEg~rF~~ 311 (591)
T PRK13590 235 DAVGNVVGRYKGSTPQAKRLLTGSHYDTVRNGGKYDGRLGIFVPMACVRELHR---QGRRLPFGLEVVGFAEEEGQRYKA 311 (591)
T ss_pred CCCCCEEEEecCCCCCCCeEEEecccccCCCCCCcccHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEecCCccccCCc
Confidence 4559999999997643478999999999987 889999999999999999875 4678889999999999996
Q ss_pred CCCChHHHHH
Q 005260 396 GLIGSTEWVE 405 (705)
Q Consensus 396 Gl~GS~~~~~ 405 (705)
+++||..|.-
T Consensus 312 ~~~GS~~~~G 321 (591)
T PRK13590 312 TFLGSGALIG 321 (591)
T ss_pred cccchHHHhC
Confidence 5899998754
No 35
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.47 E-value=7.4e-07 Score=85.57 Aligned_cols=101 Identities=20% Similarity=0.186 Sum_probs=71.1
Q ss_pred CCcceEEeEEEec--CCCh-hchHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCCCCCCCCCCCCc
Q 005260 139 KSGTVIGPVVYVN--YGRV-EDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARW 215 (705)
Q Consensus 139 ~~G~v~g~lVyv~--~G~~-~D~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~ 215 (705)
+.+.++|.|+.+. .|+. .++.-+ ...++.|||||++.|+|.+.+|+++|+++||+|||+|++..+..
T Consensus 36 ~~~~~~g~lv~~~p~~gC~~~~~~~~--~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~-------- 105 (153)
T cd02123 36 PGSGLKGVLVVAEPLNACSPIENPPL--NSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDL-------- 105 (153)
T ss_pred CCCceEEEEEeCCccccCCCCccccc--ccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcc--------
Confidence 3577999999873 3543 232100 13689999999999999999999999999999999998632110
Q ss_pred CCCCCCCCCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcCC
Q 005260 216 FPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (705)
Q Consensus 216 yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~~ 286 (705)
++ . .|+.. . .....||++.|+.+++..|++.++.
T Consensus 106 ~~--------------m---~~~~~-~-------------------~~~v~IP~v~Is~~dg~~L~~~l~~ 139 (153)
T cd02123 106 IS--------------M---SGNDQ-E-------------------IKGIDIPSVFVGKSTGEILKKYASY 139 (153)
T ss_pred ee--------------c---cCCCC-C-------------------CcCCEEEEEEeeHHHHHHHHHHHhc
Confidence 00 0 11110 0 0134899999999999999998864
No 36
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.42 E-value=1.2e-06 Score=82.46 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=70.7
Q ss_pred cccC-CCCcceEEeEEEec-----CCChh-chHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCCCC
Q 005260 134 FHGY-AKSGTVIGPVVYVN-----YGRVE-DYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDY 206 (705)
Q Consensus 134 ~~a~-S~~G~v~g~lVyv~-----~G~~~-D~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~ 206 (705)
-+++ ++..++.|-||... .|+.. +.. ....+++|+|||++.|.|.+.+|+.+|+++||+|||+|++...
T Consensus 21 ~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~---~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~- 96 (138)
T cd02122 21 RYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRF---PIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGT- 96 (138)
T ss_pred ccCCCCCCCccEEEEecCCCCCCcCCCCCCccc---cCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCC-
Confidence 3444 67788899876442 34421 110 0124689999999999999999999999999999999986421
Q ss_pred CCCCCCCCcCCCCCCCCCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcCC
Q 005260 207 GGGSDDARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (705)
Q Consensus 207 ~~~~~~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~~ 286 (705)
.. ..+ ..+. .....||++.|+..+|+.|++.+..
T Consensus 97 ~~---------------------~~~--~m~~-----------------------~~~~~ip~v~Is~~~G~~l~~~l~~ 130 (138)
T cd02122 97 GN---------------------ETV--KMSH-----------------------PGTGDIVAIMITNPKGMEILELLER 130 (138)
T ss_pred CC---------------------cee--eccC-----------------------CCCCcceEEEEcHHHHHHHHHHHHc
Confidence 00 000 0011 1123789999999999999999853
No 37
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.41 E-value=5.2e-06 Score=81.76 Aligned_cols=143 Identities=27% Similarity=0.306 Sum_probs=97.1
Q ss_pred EEeeccCCcC---------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCC-C
Q 005260 342 ILGNHRDAWT---------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLI-G 399 (705)
Q Consensus 342 iigaH~Ds~~---------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~-G 399 (705)
++.+|+|+++ .|+.|+..|++++|.+++.|.+ .+.+++++|+|++..+||.|.. |
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~---~~~~~~~~i~~~~~~~EE~g~~~g 77 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKE---SGDDLPGNIIFLFTPDEEIGSIGG 77 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHH---TTTTCSSEEEEEEESTCCGTSTTH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHh---ccccccccccccccccccCCCcch
Confidence 5678999876 2999999999999999998875 3458899999999999999998 9
Q ss_pred hHHHHHHHHHhhhccEEEEEEccCcccC-Cc-c---ccccChhHHHHHHHHHHHcCCCCCCccchhhccccCCCCCcccc
Q 005260 400 STEWVEENREMLASRAVAYLNIDSAVHE-AG-F---HASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGR 474 (705)
Q Consensus 400 S~~~~~~~~~~l~~~~va~iNlD~~g~g-~~-l---~~~~sp~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~ 474 (705)
+.+++++. +...+..|.+..+ .. . ....++.+.+.+.++.+.+... ......
T Consensus 78 ~~~l~~~~-------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 134 (189)
T PF01546_consen 78 AKHLLEEG-------AFFGLHPDYVIIGEPTGKGGVGSDNDPPLVQALQAAAQEVGGE----------------PPEPVA 134 (189)
T ss_dssp HHHHHHHC-------EEEEEEESEEEECECETTSEEEHCTCHHHHHHHHHHHHHTTSS----------------EEEEEE
T ss_pred hhhhhhhc-------ccccccccccccccccccccccccccHHHHHHHHHHHHHHhhc----------------cccccc
Confidence 99888763 3334445544333 11 1 1224555777777777764320 011233
Q ss_pred CCCCCCchHHHHh--cCCceEEEeeeCCCCCCCCCCccchH
Q 005260 475 LGGGGSDYAAFIQ--HIGVPVADMSFGTGYPVYHSMYDDFI 513 (705)
Q Consensus 475 ~g~~~SD~~~F~~--~~GIPs~~l~~~~~~p~yHt~~Dt~~ 513 (705)
.+ +++|...|.. ..|+|++.+..+. ...|++...++
T Consensus 135 ~~-g~tD~~~~~~~~~~~~~~i~~G~~~--~~~H~~~E~i~ 172 (189)
T PF01546_consen 135 SG-GGTDAGFLAEVKGLGIPAIGFGPGG--SNAHTPDEYID 172 (189)
T ss_dssp ES-SSSTHHHHHCHHHTTEEEEEEESCE--ESTTSTT-EEE
T ss_pred ee-ccccchhhhhhhccccceeeeCCCC--CCCCCCCcEec
Confidence 34 7889887773 4799999887543 56788775543
No 38
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.39 E-value=1.3e-06 Score=80.00 Aligned_cols=95 Identities=21% Similarity=0.162 Sum_probs=66.2
Q ss_pred eEEeEEEec--CCChh-chHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCCCCCCCCCCCCcCCCC
Q 005260 143 VIGPVVYVN--YGRVE-DYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFPDD 219 (705)
Q Consensus 143 v~g~lVyv~--~G~~~-D~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP~~ 219 (705)
+.|+||.+. .|+.. ++ ..+++|||||++.|.|.+..|+.+|+++||+|||+|++..+...
T Consensus 11 ~~~~lv~~~p~~gC~~~~~------~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~----------- 73 (118)
T cd02127 11 KHVPLVPADPLEACEELRN------IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDE----------- 73 (118)
T ss_pred cceEEEECCccccCCCCCC------ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccc-----------
Confidence 346777764 45532 22 24799999999999999999999999999999999976422100
Q ss_pred CCCCCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcCC
Q 005260 220 KWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (705)
Q Consensus 220 ~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~~ 286 (705)
..+.+ .++.. .....||++.|+.+++..|++.+..
T Consensus 74 ----------~~~~m-~~~~~---------------------~~~i~IP~v~Is~~dG~~L~~~l~~ 108 (118)
T cd02127 74 ----------YYVEM-IQDDS---------------------SRRADIPAAFLLGKNGYMIRKTLER 108 (118)
T ss_pred ----------cceEe-cCCCC---------------------CCCceEEEEEecHHHHHHHHHHHHc
Confidence 00000 01110 1234899999999999999998864
No 39
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=98.35 E-value=1.5e-06 Score=97.02 Aligned_cols=80 Identities=28% Similarity=0.388 Sum_probs=68.2
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccC-----CC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEY-----GL 397 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~-GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~-----Gl 397 (705)
..|+||+++|...+.+.|++++|+|+++. |+.|+.+|+|++|++++.|.+ .+.+|+++|.|+++.+||. |+
T Consensus 60 ~~nlia~~~g~~~~~~~l~~~~H~DtVp~~g~~D~~~g~aa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~~~~~~~~ 136 (414)
T PRK12890 60 AGNLFGRLPGRDPDLPPLMTGSHLDTVPNGGRYDGILGVLAGLEVVAALRE---AGIRPPHPLEVIAFTNEEGVRFGPSM 136 (414)
T ss_pred CCcEEEEeCCCCCCCCEEEEeCcccCCCCCCCcCCHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEEecccccccCCcc
Confidence 35999999886434578999999999987 779999999999999998865 3557899999999999997 67
Q ss_pred CChHHHHHH
Q 005260 398 IGSTEWVEE 406 (705)
Q Consensus 398 ~GS~~~~~~ 406 (705)
.||..+...
T Consensus 137 ~G~~~~~~~ 145 (414)
T PRK12890 137 IGSRALAGT 145 (414)
T ss_pred ccHHHHHcc
Confidence 899887654
No 40
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.34 E-value=3.6e-06 Score=78.16 Aligned_cols=62 Identities=29% Similarity=0.288 Sum_probs=45.9
Q ss_pred cceEEeEEEec---CCCh---hchHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecC
Q 005260 141 GTVIGPVVYVN---YGRV---EDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDR 203 (705)
Q Consensus 141 G~v~g~lVyv~---~G~~---~D~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp 203 (705)
+.++|.|+|.- .|+. .+..- +.......+||||++.|.|.+..|+.+|+++||+|||+|++.
T Consensus 9 ~~~~G~l~~~~~~~~gC~~~~~~~~~-~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~ 76 (127)
T cd02125 9 GTLTGVVVYPKENRTGCKEFDVFFKP-KKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNV 76 (127)
T ss_pred CeeEEEEEecCCccccCCCCcccccc-cccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECC
Confidence 46889999983 4442 11100 001224788999999999999999999999999999999763
No 41
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=98.29 E-value=2.5e-06 Score=95.45 Aligned_cols=78 Identities=27% Similarity=0.405 Sum_probs=66.8
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCC-----C
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYG-----L 397 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~-GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~G-----l 397 (705)
..||+|+++|...+.+.|++++|+|+++. |..|..+|++++|++++.|.+. |.+|+++|.|++|..||.| +
T Consensus 62 ~gNl~a~~~g~~~~~~~l~~~~H~DtVp~gg~~D~k~Gv~a~l~a~~~l~~~---~~~~~~~i~v~~~~dEE~~~f~~~~ 138 (414)
T PRK12891 62 MGNLFARRAGRDPDAAPVMTGSHADSQPTGGRYDGIYGVLGGLEVVRALNDA---GIETERPVDVVIWTNEEGSRFAPSM 138 (414)
T ss_pred CCCEEEEecCCCCCCCeEEEEecccCCCCCccccchhhHHHHHHHHHHHHHc---CCCCCCCeEEEEecccccCcCCccc
Confidence 35999999987543578999999999987 7789999999999999998753 5688999999999999975 5
Q ss_pred CChHHHH
Q 005260 398 IGSTEWV 404 (705)
Q Consensus 398 ~GS~~~~ 404 (705)
+||..+.
T Consensus 139 ~Gs~~~~ 145 (414)
T PRK12891 139 VGSGVFF 145 (414)
T ss_pred ccHHHHh
Confidence 7998664
No 42
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.28 E-value=2.6e-06 Score=77.95 Aligned_cols=76 Identities=21% Similarity=0.165 Sum_probs=56.8
Q ss_pred CcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCCCCCCCCCCCCcCCCCCCCCCCCceeeeeecCCCCCCCCCCC
Q 005260 166 VNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWP 245 (705)
Q Consensus 166 v~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~p 245 (705)
.+++|||||++.|+|.+..|+.+|+++||+|||+|++....+. + . ....++
T Consensus 36 ~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~------------------~---~-m~~~~~------- 86 (117)
T cd04813 36 AEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGL------------------I---T-MFSNGD------- 86 (117)
T ss_pred CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccc------------------e---e-cccCCC-------
Confidence 4799999999999999999999999999999999975421100 0 0 000011
Q ss_pred CCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcCC
Q 005260 246 SSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (705)
Q Consensus 246 s~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~~ 286 (705)
.....||++.|++++++.|.+.++.
T Consensus 87 ----------------~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 87 ----------------TDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred ----------------CCCcEEEEEEEcHHHHHHHHHhccc
Confidence 1234899999999999999887754
No 43
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.17 E-value=1.3e-05 Score=73.47 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=65.1
Q ss_pred ceEEeEEEec--CCChhchHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCCCCCCCCCCCCcCCCC
Q 005260 142 TVIGPVVYVN--YGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFPDD 219 (705)
Q Consensus 142 ~v~g~lVyv~--~G~~~D~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP~~ 219 (705)
.+.|++|... .++ ++.. ...+++|||||++.+.|.+..|+.+|+++||+|+|+|++.....
T Consensus 16 ~~~~~~~~~~~~~~C-~~~~----~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~------------ 78 (118)
T cd04818 16 VVLAGAAPASNTDGC-TAFT----NAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGA------------ 78 (118)
T ss_pred ceeEEEecCCccccc-CCCC----cCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCc------------
Confidence 3788888763 222 2221 13479999999999988888999999999999999998643200
Q ss_pred CCCCCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcC
Q 005260 220 KWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIG 285 (705)
Q Consensus 220 ~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~ 285 (705)
.+ .++++. ....||++.|+++++..|++.+.
T Consensus 79 ------~~-------~~~~~~----------------------~~~~iP~v~V~~~~g~~l~~~l~ 109 (118)
T cd04818 79 ------PI-------TMGGDD----------------------PDITIPAVMISQADGDALKAALA 109 (118)
T ss_pred ------ce-------eccCCC----------------------CCCEEeEEEecHHHHHHHHHHHh
Confidence 00 011110 12369999999999999999986
No 44
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.5e-05 Score=87.23 Aligned_cols=184 Identities=18% Similarity=0.194 Sum_probs=114.7
Q ss_pred eeeeeEEEEecC-----CCCC-CcEEEEeeccCCcCC------CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEE
Q 005260 322 ATIQNVIGIIPG-----TEEP-DRLVILGNHRDAWTF------GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCN 389 (705)
Q Consensus 322 ~~~~NVia~i~G-----~~~p-~~~ViigaH~Ds~~~------GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~ 389 (705)
...+||....+. +..+ +++||..+.+|+..+ ||...-++...+|..||+|.+.... -..+|++.|++
T Consensus 155 l~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai-~nl~rnV~f~~ 233 (596)
T KOG2657|consen 155 LHSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAI-NNLNRNVFFAF 233 (596)
T ss_pred cCCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCccc-ccccceeEEEE
Confidence 345666666543 2233 689999999999764 8888999999999999998653221 13589999999
Q ss_pred eCCccCCCCChHHHHHHHHHhhhccEEEEEE---ccCc------ccC--CccccccC----hhHHHHHHHHHHHcCC-CC
Q 005260 390 WDAEEYGLIGSTEWVEENREMLASRAVAYLN---IDSA------VHE--AGFHASAT----PQLDELLKQAAKQVQD-PD 453 (705)
Q Consensus 390 ~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iN---lD~~------g~g--~~l~~~~s----p~l~~l~~~~~~~v~~-p~ 453 (705)
+.||-++++||+.++-+. +..+-.++..| +|.+ |.+ ..+++... -.+.+.+.+..+.+.. +.
T Consensus 234 f~get~~ylgS~r~~yem--e~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlr 311 (596)
T KOG2657|consen 234 FNGETLDYLGSGRAAYEM--ENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLR 311 (596)
T ss_pred eecceeeeccchhhhhHh--hcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhccc
Confidence 999999999999877654 23455666666 5543 333 23433322 2333333333333221 11
Q ss_pred CCccchhhccccCCCCCccccCCCCCCchHHHHh-cCCceEEEeeeCC---CCCCCCCCccchHHHH
Q 005260 454 NSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQ-HIGVPVADMSFGT---GYPVYHSMYDDFIWME 516 (705)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~~~~~g~~~SD~~~F~~-~~GIPs~~l~~~~---~~p~yHt~~Dt~~~l~ 516 (705)
. .-++--.. ...-.++ +.|-...|++ ...+.++.+...+ .+.+||+.+|+.+|++
T Consensus 312 s---~~f~ll~~---s~~s~~l--PPsSlqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdaeNin 370 (596)
T KOG2657|consen 312 S---HAFDLLKP---SGSSDRL--PPSSLQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAENIN 370 (596)
T ss_pred c---cCeeeecC---CCCCCCC--ChHHHHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchhhcc
Confidence 0 00010000 0011223 4566778998 3578888876433 4569999999999985
No 45
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=98.10 E-value=8.4e-06 Score=91.00 Aligned_cols=80 Identities=33% Similarity=0.500 Sum_probs=67.7
Q ss_pred eeEEEEecCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCC-----CC
Q 005260 325 QNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYG-----LI 398 (705)
Q Consensus 325 ~NVia~i~G~~~p~~~ViigaH~Ds~~~-GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~G-----l~ 398 (705)
.||+++++|..++.+.|++.+|+|+++. |..|+.+|+|++|.+++.|.+ .+.+++++|+|+++.+||.| ++
T Consensus 63 ~n~~a~~~g~~~~~~~l~l~~H~DtVp~~g~~dgk~gvaa~l~a~~~l~~---~~~~~~~~v~~~~~~dEE~g~~~~~~~ 139 (412)
T PRK12893 63 GNLFGRRAGTDPDAPPVLIGSHLDTQPTGGRFDGALGVLAALEVVRTLND---AGIRTRRPIEVVSWTNEEGARFAPAML 139 (412)
T ss_pred CcEEEEeCCCCCCCCEEEEEecccCCCCCCcccchhhHHHHHHHHHHHHH---cCCCCCCCeEEEEEccccccccccccc
Confidence 4999999886533578999999999876 678999999999999998865 35678899999999999986 88
Q ss_pred ChHHHHHHH
Q 005260 399 GSTEWVEEN 407 (705)
Q Consensus 399 GS~~~~~~~ 407 (705)
||..+...+
T Consensus 140 G~~~~~~~~ 148 (412)
T PRK12893 140 GSGVFTGAL 148 (412)
T ss_pred cHHHHhCcC
Confidence 998877553
No 46
>PRK09961 exoaminopeptidase; Provisional
Probab=98.08 E-value=5e-05 Score=82.69 Aligned_cols=148 Identities=19% Similarity=0.172 Sum_probs=95.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHHhhhccEEEEEEccCcccC-----
Q 005260 353 GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVHE----- 427 (705)
Q Consensus 353 GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g~g----- 427 (705)
-|-||-.|+++++|++|.+.+. ++..+|.|++..-||.|+.|++.-+... ...+ .|.+|+...+
T Consensus 163 kalDnR~g~~~lle~l~~l~~~-----~~~~~v~~~~tvqEEvG~rGa~~aa~~i----~pd~--~I~vDv~~~~d~~~~ 231 (344)
T PRK09961 163 KAFDDRLGCYLLVTLLRELHDA-----ELPAEVWLVASSSEEVGLRGGQTATRAV----SPDV--AIVLDTACWAKNFDY 231 (344)
T ss_pred eechhhHhHHHHHHHHHHhhhc-----CCCceEEEEEEcccccchHHHHHHHhcc----CCCE--EEEEeccCCCCCCCC
Confidence 7899999999999999988642 5689999999999999999998654432 2222 5556755322
Q ss_pred -----------Ccc-----ccccChhHHHHHHHHHHHcCCCCCCccchhhccccCCCCCccc-cCCCCCCchHHHHh-cC
Q 005260 428 -----------AGF-----HASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIG-RLGGGGSDYAAFIQ-HI 489 (705)
Q Consensus 428 -----------~~l-----~~~~sp~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~-~~g~~~SD~~~F~~-~~ 489 (705)
+.+ ..-.+|.+.+.+.+++++..-|.. .. ..+ +|||-..|.. ..
T Consensus 232 ~~~~~~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q-----------------~~~~~g-gGTDa~~~~~~~~ 293 (344)
T PRK09961 232 GAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGIPLQ-----------------ADMFSN-GGTDGGAVHLTGT 293 (344)
T ss_pred CCCcccccCCCceEEEccCCcCCCHHHHHHHHHHHHHcCCCcE-----------------EEecCC-CcchHHHHHHhCC
Confidence 212 122356777888888876543311 11 123 5799988764 25
Q ss_pred CceEEEeeeCCCCCCCCCCccchHHHHhhCCcchHHHHHHHHHHHHHHHHh
Q 005260 490 GVPVADMSFGTGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQL 540 (705)
Q Consensus 490 GIPs~~l~~~~~~p~yHt~~Dt~~~l~~~~dp~~~~~~~~a~~~~~l~~~L 540 (705)
|||++.++.. ..+-||+....+.= -..+.++++..++..|
T Consensus 294 Giptv~ig~p--~ry~Hs~~E~v~~~---------D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 294 GVPTVVMGPA--TRHGHCAASIADCR---------DILQMIQLLSALIQRL 333 (344)
T ss_pred CCCEEEechh--hhcccChhheEEHH---------HHHHHHHHHHHHHHHc
Confidence 9999998764 22458877655421 1234455666555444
No 47
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=98.08 E-value=1.3e-05 Score=89.53 Aligned_cols=81 Identities=31% Similarity=0.480 Sum_probs=67.6
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccC-----CC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEY-----GL 397 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~-GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~-----Gl 397 (705)
..||+|+++|...+.+.|++.+|+|+++. |..|+-+|+|++|.+++.|.+ .+.+|+++|.|++...||. |+
T Consensus 59 ~~nl~a~~~g~~~~~~~l~l~gH~DtVp~~g~~d~k~g~aa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~g~~g~~~ 135 (413)
T PRK09290 59 VGNLFGRLEGRDPDAPAVLTGSHLDTVPNGGRFDGPLGVLAGLEAVRTLNE---RGIRPRRPIEVVAFTNEEGSRFGPAM 135 (413)
T ss_pred CCcEEEEecCCCCCCCEEEEecCccCCCCCCCcCCHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEEcCCccccccCcc
Confidence 35999999875423578999999999887 778999999999999998764 4667889999999999998 57
Q ss_pred CChHHHHHHH
Q 005260 398 IGSTEWVEEN 407 (705)
Q Consensus 398 ~GS~~~~~~~ 407 (705)
.|+..+++++
T Consensus 136 ~G~~~~~~~~ 145 (413)
T PRK09290 136 LGSRVFTGAL 145 (413)
T ss_pred ccHHHHHccc
Confidence 8998887553
No 48
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=98.04 E-value=1.8e-05 Score=88.37 Aligned_cols=80 Identities=33% Similarity=0.540 Sum_probs=67.7
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCC-CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccC-----CC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEY-----GL 397 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~-GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~-----Gl 397 (705)
..|++|+++|... .+.|++++|+|+++. |-.|+-.|+|++|++++.|.+ .|++|+++|.|+++..||. |+
T Consensus 61 ~~nl~a~~~g~~~-~~~l~l~gH~DtVp~~g~~dg~~Gvaa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~~~~~~~~ 136 (412)
T PRK12892 61 IGNVFGRLPGPGP-GPALLVGSHLDSQNLGGRYDGALGVVAGLEAARALNE---HGIATRHPLDVVAWCDEEGSRFTPGF 136 (412)
T ss_pred CCcEEEEecCCCC-CCeEEEEccccCCCCCCcccchHHHHHHHHHHHHHHH---cCCCCCCCeEEEEecCcccccccCcc
Confidence 3599999998653 478999999999987 667888999999999998764 4678999999999999997 57
Q ss_pred CChHHHHHHH
Q 005260 398 IGSTEWVEEN 407 (705)
Q Consensus 398 ~GS~~~~~~~ 407 (705)
.||..+++++
T Consensus 137 ~Gs~~~~~~~ 146 (412)
T PRK12892 137 LGSRAYAGRL 146 (412)
T ss_pred ccHHHHHcCC
Confidence 8999988643
No 49
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=98.04 E-value=9e-05 Score=80.04 Aligned_cols=152 Identities=23% Similarity=0.204 Sum_probs=100.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHHhhhccEEEEEEccCcccCCc---
Q 005260 353 GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVHEAG--- 429 (705)
Q Consensus 353 GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g~g~~--- 429 (705)
=|-||-.||++|||++|.|. - -.+..++.|++..-||.|+.|+...+.+..+. ..|.+|....+..
T Consensus 177 kalDdR~gva~lle~lk~l~-~----~~~~~~vy~v~tvqEEVGlrGA~~~a~~i~pd------~aiavd~~~~~d~~~~ 245 (355)
T COG1363 177 KALDDRAGVAALLELLKELK-G----IELPADVYFVASVQEEVGLRGAKTSAFRIKPD------IAIAVDVTPAGDTPGV 245 (355)
T ss_pred eeccchHhHHHHHHHHHHhc-c----CCCCceEEEEEecchhhccchhhccccccCCC------EEEEEecccccCCCCC
Confidence 47899999999999999983 1 26889999999999999999998766543322 3466776655422
Q ss_pred ------------ccc-----ccChhHHHHHHHHHHHcCCCCCCccchhhccccCCCCCccccCCCCCCchHHHHhc-CCc
Q 005260 430 ------------FHA-----SATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQH-IGV 491 (705)
Q Consensus 430 ------------l~~-----~~sp~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~g~~~SD~~~F~~~-~GI 491 (705)
+.+ -.+|.|.+.+.+++++-.-|. .+...++++||-..+... .||
T Consensus 246 ~~~~~~lg~Gp~i~~~D~~~~~~~~l~~~L~~~A~~~~Ip~-----------------Q~~v~~~ggTDA~a~~~~g~gv 308 (355)
T COG1363 246 PKGDVKLGKGPVIRVKDASGIYHPKLRKFLLELAEKNNIPY-----------------QVDVSPGGGTDAGAAHLTGGGV 308 (355)
T ss_pred cccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCe-----------------EEEecCCCCccHHHHHHcCCCC
Confidence 111 125778888888888654332 122222378999887662 369
Q ss_pred eEEEeeeCCCCCCCCCCccchHHHHhhCCcchHHHHHHHHHHHHHHHHhCCC
Q 005260 492 PVADMSFGTGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLADE 543 (705)
Q Consensus 492 Ps~~l~~~~~~p~yHt~~Dt~~~l~~~~dp~~~~~~~~a~~~~~l~~~La~~ 543 (705)
|+..++..-. +-|+++...+. + -..+..+++..++.++...
T Consensus 309 pta~Igip~r--y~Hs~~e~~~~-~--------D~~~~~~Ll~~~i~~~~~~ 349 (355)
T COG1363 309 PTALIGIPTR--YIHSPVEVAHL-D--------DLEATVKLLVAYLESLDRE 349 (355)
T ss_pred ceEEEecccc--cccCcceeecH-H--------HHHHHHHHHHHHHHhcchh
Confidence 9999986433 45887765542 1 1234555666666665543
No 50
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.03 E-value=1.1e-05 Score=74.68 Aligned_cols=71 Identities=24% Similarity=0.339 Sum_probs=56.0
Q ss_pred CCcccceEEEEEeCCC-cchhHHHHHHHcCCeEEEEEecCCCCCCCCCCCCcCCCCCCCCCCCceeeeeecCCCCCCCCC
Q 005260 165 VVNVTGTVVLARYGQI-FRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFPDDKWMPPSGVQVGSVYDGTGDPTTPG 243 (705)
Q Consensus 165 gv~v~GkIvl~~~g~~-~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg 243 (705)
+.+++||||||+.+.+ .+..|+..|++.||+|+|+++++.+... .
T Consensus 47 ~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~~----------------------~------------ 92 (126)
T cd02120 47 PSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLD----------------------V------------ 92 (126)
T ss_pred hhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCce----------------------e------------
Confidence 4579999999999888 7789999999999999999986532100 0
Q ss_pred CCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcCC
Q 005260 244 WPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (705)
Q Consensus 244 ~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~~ 286 (705)
. .....||++.|+++++..|++.++.
T Consensus 93 ---------~--------~~~~~iP~v~I~~~~g~~l~~y~~~ 118 (126)
T cd02120 93 ---------V--------ADAHVLPAVHVDYEDGTAILSYINS 118 (126)
T ss_pred ---------c--------ccccccceEEECHHHHHHHHHHHHc
Confidence 0 0123699999999999999999864
No 51
>PRK07906 hypothetical protein; Provisional
Probab=98.00 E-value=2.3e-05 Score=88.00 Aligned_cols=83 Identities=29% Similarity=0.439 Sum_probs=68.8
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p 381 (705)
..||+++++|..+..+.|++.+|+|+++ .|+.|+-+|++++|++++.|.+ .+.+|
T Consensus 51 ~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~---~~~~~ 127 (426)
T PRK07906 51 RANVVARLPGADPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLAR---TGRRP 127 (426)
T ss_pred ceEEEEEEeCCCCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHH---cCCCC
Confidence 4799999988654356899999999973 1899999999999999998865 35688
Q ss_pred CCcEEEEEeCCccCC-CCChHHHHHHHHH
Q 005260 382 RRTIVLCNWDAEEYG-LIGSTEWVEENRE 409 (705)
Q Consensus 382 ~rtI~Fv~~~~EE~G-l~GS~~~~~~~~~ 409 (705)
+++|+|+++..||.| ..|+..+++++..
T Consensus 128 ~~~i~~~~~~dEE~g~~~g~~~l~~~~~~ 156 (426)
T PRK07906 128 PRDLVFAFVADEEAGGTYGAHWLVDNHPE 156 (426)
T ss_pred CccEEEEEecCcccchhhhHHHHHHHHHH
Confidence 999999999999986 5699988776543
No 52
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.96 E-value=3.9e-05 Score=81.51 Aligned_cols=132 Identities=23% Similarity=0.248 Sum_probs=86.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHHhhhccEEEEEEccCccc------
Q 005260 353 GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVH------ 426 (705)
Q Consensus 353 GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g~------ 426 (705)
=|.||-.|+++|+|++|.+++. ....+|.|++..-||.|+.|+..-+.+..+ + ..|.+|..-.
T Consensus 131 kalDdR~g~~~lle~l~~l~~~-----~~~~~v~~v~tvqEEvG~rGA~~aa~~i~P----D--~ai~vD~~~a~d~~~~ 199 (292)
T PF05343_consen 131 KALDDRAGCAVLLELLRELKEK-----ELDVDVYFVFTVQEEVGLRGAKTAAFRIKP----D--IAIAVDVTPAGDTPGS 199 (292)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTS-----S-SSEEEEEEESSCTTTSHHHHHHHHHH-C----S--EEEEEEEEEESSSTTS
T ss_pred EeCCchhHHHHHHHHHHHHhhc-----CCCceEEEEEEeeeeecCcceeecccccCC----C--EEEEEeeeccCCCCCC
Confidence 3679999999999999988653 345999999999999999999875554322 2 2344554321
Q ss_pred ---------CCccc-----cccChhHHHHHHHHHHHcCCCCCCccchhhccccCCCCCccccCCCCCCchHHHHh-cCCc
Q 005260 427 ---------EAGFH-----ASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQ-HIGV 491 (705)
Q Consensus 427 ---------g~~l~-----~~~sp~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~g~~~SD~~~F~~-~~GI 491 (705)
|+.+. .-.+|.+.+.+.+++++..-|.. ......++||-..|.. ..||
T Consensus 200 ~~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q-----------------~~~~~~ggTDa~~~~~~~~Gi 262 (292)
T PF05343_consen 200 DEKEQGLGKGPVIRVGDSSMIPNPKLVDKLREIAEENGIPYQ-----------------REVFSGGGTDAGAIQLSGGGI 262 (292)
T ss_dssp TTTTSCTTS-EEEEEEETTEESHHHHHHHHHHHHHHTT--EE-----------------EEEESSSSSTHHHHHTSTTSS
T ss_pred chhhccCCCCcEEEEccCCCCCCHHHHHHHHHHHHHcCCCeE-----------------EEecCCcccHHHHHHHcCCCC
Confidence 11121 22356788888888886543321 1111127899988865 2499
Q ss_pred eEEEeeeCCCCCCCCCCccchHH
Q 005260 492 PVADMSFGTGYPVYHSMYDDFIW 514 (705)
Q Consensus 492 Ps~~l~~~~~~p~yHt~~Dt~~~ 514 (705)
|++.++.. ..+.||+..+.+.
T Consensus 263 ~t~~i~iP--~ry~Hs~~e~~~~ 283 (292)
T PF05343_consen 263 PTAVISIP--CRYMHSPVEVIDL 283 (292)
T ss_dssp EEEEEEEE--EBSTTSTTEEEEH
T ss_pred CEEEEecc--cccCCCcceEEEH
Confidence 99999863 3367998877653
No 53
>PRK09133 hypothetical protein; Provisional
Probab=97.95 E-value=3.9e-05 Score=87.32 Aligned_cols=91 Identities=27% Similarity=0.410 Sum_probs=72.8
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p 381 (705)
..||+++++|... .+.|++.+|+|+++ .|+.|+-+|+|++|++++.|.+ .+.+|
T Consensus 88 ~~nli~~~~g~~~-~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~---~~~~~ 163 (472)
T PRK09133 88 KGNLVARLRGTDP-KKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKR---EGFKP 163 (472)
T ss_pred ceeEEEEecCCCC-CCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHh---cCCCC
Confidence 4799999988653 46799999999863 1999999999999999888754 45678
Q ss_pred CCcEEEEEeCCcc-CCCCChHHHHHHHHHhhhccEEEEEE
Q 005260 382 RRTIVLCNWDAEE-YGLIGSTEWVEENREMLASRAVAYLN 420 (705)
Q Consensus 382 ~rtI~Fv~~~~EE-~Gl~GS~~~~~~~~~~l~~~~va~iN 420 (705)
+++|.|++...|| .|..|+..+++++...+ +..+.|+
T Consensus 164 ~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~~--~~~~~i~ 201 (472)
T PRK09133 164 KRDIILALTGDEEGTPMNGVAWLAENHRDLI--DAEFALN 201 (472)
T ss_pred CCCEEEEEECccccCccchHHHHHHHHhhcc--CeEEEEE
Confidence 9999999999999 78999999888765322 2334555
No 54
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=97.92 E-value=4.1e-05 Score=85.52 Aligned_cols=80 Identities=30% Similarity=0.350 Sum_probs=67.7
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC-------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCc
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT-------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRT 384 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~-------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rt 384 (705)
..||+|+++|.. .+.|++.+|+|+++ .|+.|+.+|++++|++++.|.+. +.+|..+
T Consensus 87 ~~~lia~~~g~~--~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~---~~~~~~~ 161 (410)
T PRK06133 87 GDMVVATFKGTG--KRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQL---GFKDYGT 161 (410)
T ss_pred CCeEEEEECCCC--CceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHc---CCCCCCC
Confidence 369999998863 46799999999984 27789999999999999988653 4567789
Q ss_pred EEEEEeCCccCCCCChHHHHHHHH
Q 005260 385 IVLCNWDAEEYGLIGSTEWVEENR 408 (705)
Q Consensus 385 I~Fv~~~~EE~Gl~GS~~~~~~~~ 408 (705)
|+|++..+||.|..|+..++++..
T Consensus 162 i~~~~~~dEE~g~~G~~~~~~~~~ 185 (410)
T PRK06133 162 LTVLFNPDEETGSPGSRELIAELA 185 (410)
T ss_pred EEEEEECCcccCCccHHHHHHHHh
Confidence 999999999999899999987754
No 55
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.88 E-value=3.8e-05 Score=71.58 Aligned_cols=37 Identities=30% Similarity=0.402 Sum_probs=34.8
Q ss_pred cccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecC
Q 005260 167 NVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDR 203 (705)
Q Consensus 167 ~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp 203 (705)
+++|||||++.|.|.+.+|+.+|+++||+|||+|++.
T Consensus 53 ~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~ 89 (129)
T cd02124 53 DLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNG 89 (129)
T ss_pred cccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECC
Confidence 6899999999999999999999999999999999763
No 56
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=97.86 E-value=4.5e-05 Score=84.07 Aligned_cols=78 Identities=28% Similarity=0.388 Sum_probs=65.6
Q ss_pred eeEEEEecCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHhHHcCCCC
Q 005260 325 QNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------------GAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (705)
Q Consensus 325 ~NVia~i~G~~~p~~~ViigaH~Ds~~~-----------------------GA~DnaSG~A~lLElAr~l~~l~~~g~~p 381 (705)
.|+++.++|.. +.+.|++.+|+|+++. |+.|+.+|+|++|++++.|.+. +.++
T Consensus 52 ~~~~~~~~g~~-~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~---~~~~ 127 (375)
T TIGR01910 52 GKVVVKEPGNG-NEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREA---GIKP 127 (375)
T ss_pred cceEEeccCCC-CCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHc---CCCC
Confidence 46888888864 2468999999999753 6889999999999999987653 4467
Q ss_pred CCcEEEEEeCCccCCCCChHHHHHH
Q 005260 382 RRTIVLCNWDAEEYGLIGSTEWVEE 406 (705)
Q Consensus 382 ~rtI~Fv~~~~EE~Gl~GS~~~~~~ 406 (705)
+++|+|++..+||.|..|+..++++
T Consensus 128 ~~~i~~~~~~~EE~g~~G~~~~~~~ 152 (375)
T TIGR01910 128 NGNIILQSVVDEESGEAGTLYLLQR 152 (375)
T ss_pred CccEEEEEEcCcccCchhHHHHHHc
Confidence 8999999999999999999998876
No 57
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=97.84 E-value=4.2e-05 Score=83.77 Aligned_cols=78 Identities=32% Similarity=0.383 Sum_probs=65.1
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCC----------------CC----CCChhHHHHHHHHHHHHHHhHHcCCCCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF----------------GA----VDPNSGTAALLEVAQRLNKLQKRGWKPRR 383 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~----------------GA----~DnaSG~A~lLElAr~l~~l~~~g~~p~r 383 (705)
..|++++++|+. +.+.|++.+|+|+++. |+ .|+.+|+|++|++++.|.+. + .|++
T Consensus 49 ~~~~~~~~~g~~-~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~---~-~~~~ 123 (361)
T TIGR01883 49 DNNLIARLPGTV-KFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTE---E-TPHG 123 (361)
T ss_pred CceEEEEEeCCC-CCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhc---C-CCCC
Confidence 579999998874 3478999999999762 55 69999999999999987653 3 4678
Q ss_pred cEEEEEeCCccCCCCChHHHHHH
Q 005260 384 TIVLCNWDAEEYGLIGSTEWVEE 406 (705)
Q Consensus 384 tI~Fv~~~~EE~Gl~GS~~~~~~ 406 (705)
+|+|+++.+||.|..|+..+.+.
T Consensus 124 ~v~~~~~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 124 TIEFIFTVKEELGLIGMRLFDES 146 (361)
T ss_pred CEEEEEEcccccCchhHhHhChh
Confidence 99999999999999999987653
No 58
>PRK08596 acetylornithine deacetylase; Validated
Probab=97.74 E-value=0.00011 Score=82.34 Aligned_cols=80 Identities=29% Similarity=0.365 Sum_probs=67.1
Q ss_pred eeEEEEecCCCCC-CcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCC
Q 005260 325 QNVIGIIPGTEEP-DRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (705)
Q Consensus 325 ~NVia~i~G~~~p-~~~ViigaH~Ds~~-----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~ 380 (705)
.||+++++|...+ .+.|++.+|+|+++ .|+.|+-+|++++|.+++.|.+ .+++
T Consensus 63 ~nvia~~~g~~~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~---~~~~ 139 (421)
T PRK08596 63 PNVVGVKKGTESDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHE---AGIE 139 (421)
T ss_pred ceEEEEecCCCCCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHH---cCCC
Confidence 6999999886431 25799999999831 2999999999999999998865 3567
Q ss_pred CCCcEEEEEeCCccCCCCChHHHHHHH
Q 005260 381 PRRTIVLCNWDAEEYGLIGSTEWVEEN 407 (705)
Q Consensus 381 p~rtI~Fv~~~~EE~Gl~GS~~~~~~~ 407 (705)
++++|.|++..+||.|..|+.+++++.
T Consensus 140 ~~~~v~~~~~~dEE~g~~G~~~~~~~~ 166 (421)
T PRK08596 140 LPGDLIFQSVIGEEVGEAGTLQCCERG 166 (421)
T ss_pred CCCcEEEEEEeccccCCcCHHHHHhcC
Confidence 889999999999999999999988763
No 59
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=97.68 E-value=0.00033 Score=76.23 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=95.1
Q ss_pred CCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHHhhhccEEEEEEccCccc-------
Q 005260 354 AVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVH------- 426 (705)
Q Consensus 354 A~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g~------- 426 (705)
|-||-.|+++|+|++|.+.+. ++..+|.|++..-||.|+.|+..-+... ..+ ..|-+|+.-.
T Consensus 176 alDdR~g~a~l~e~l~~l~~~-----~~~~~l~~~~tvqEEvG~rGA~~aa~~i----~pD--~aI~vDv~~~~d~~~~~ 244 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQ-----ELPNTLIAGANVQEEVGLRGAHVSTTKF----NPD--IFFAVDCSPAGDIYGDQ 244 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhc-----CCCceEEEEEEChhhcCchhhhhHHhhC----CCC--EEEEEecCCcCCCCCCC
Confidence 558999999999999998653 5789999999999999999998533322 222 3455665422
Q ss_pred ------CCcc-----ccccChhHHHHHHHHHHHcCCCCCCccchhhccccCCCCCccccCCCCCCchH--HHHhcCCceE
Q 005260 427 ------EAGF-----HASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYA--AFIQHIGVPV 493 (705)
Q Consensus 427 ------g~~l-----~~~~sp~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~g~~~SD~~--~F~~~~GIPs 493 (705)
|+.+ ..-.+|.+.+.+.+++++..-|.. ....+ +|+|-. .|.. .|||+
T Consensus 245 ~~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q-----------------~~~~~-gGtDa~~~~~~~-~Gvpt 305 (350)
T TIGR03107 245 GGKLGEGTLLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQ-----------------YYVAK-GGTDAGAAHLKN-SGVPS 305 (350)
T ss_pred ccccCCCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcE-----------------EecCC-CCchHHHHHHhC-CCCcE
Confidence 3323 223457788888888886543321 11122 567776 4444 69999
Q ss_pred EEeeeCCCCCCCCCCccchHHHHhhCCcchHHHHHHHHHHHHHHHHh
Q 005260 494 ADMSFGTGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQL 540 (705)
Q Consensus 494 ~~l~~~~~~p~yHt~~Dt~~~l~~~~dp~~~~~~~~a~~~~~l~~~L 540 (705)
+.++- +..+-||+....+.-| ..+.++++..++..|
T Consensus 306 ~~i~i--p~Ry~Hs~~e~i~~~D---------~~~~~~Ll~~~i~~l 341 (350)
T TIGR03107 306 TTIGV--CARYIHSHQTLYSIDD---------FLAAQAFLQAIVKKL 341 (350)
T ss_pred EEEcc--CcccccChhheeeHHH---------HHHHHHHHHHHHHhc
Confidence 99876 3446788887664321 234556666665554
No 60
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=97.66 E-value=0.0002 Score=80.07 Aligned_cols=77 Identities=25% Similarity=0.268 Sum_probs=61.4
Q ss_pred eeeEEEEecCCCCC-CcEEEEeeccCCcCC--------------------------------------------------
Q 005260 324 IQNVIGIIPGTEEP-DRLVILGNHRDAWTF-------------------------------------------------- 352 (705)
Q Consensus 324 ~~NVia~i~G~~~p-~~~ViigaH~Ds~~~-------------------------------------------------- 352 (705)
..||+|.++|.... .+.|++.||+|++..
T Consensus 57 ~gnv~~~~~~~~~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~ 136 (410)
T TIGR01882 57 NGYVIATIPSNTDKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGT 136 (410)
T ss_pred ceEEEEEecCCCCCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCC
Confidence 68999999986531 278999999999751
Q ss_pred ---CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHH
Q 005260 353 ---GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVE 405 (705)
Q Consensus 353 ---GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~ 405 (705)
| .|+-+|+|+||++++.|.+.. + .++.+|+|++..+||.| .|+..+..
T Consensus 137 ~l~G-~D~KgglAa~l~A~~~L~e~~--~-~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 137 TLLG-ADDKAGIAEIMTAADYLINHP--E-IKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred Eeec-ccCHHHHHHHHHHHHHHHhCC--C-CCCCCEEEEEECcccCC-cCcchhhh
Confidence 3 577889999999999987631 1 35678999999999998 58877653
No 61
>PRK13381 peptidase T; Provisional
Probab=97.66 E-value=0.00016 Score=80.59 Aligned_cols=79 Identities=20% Similarity=0.218 Sum_probs=65.1
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCC------------------------------------------------CC-
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF------------------------------------------------GA- 354 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~------------------------------------------------GA- 354 (705)
..||||+++|+.+..+.|++.+|+|+++. |+
T Consensus 54 ~~nvi~~~~g~~~~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~ 133 (404)
T PRK13381 54 HAIVTAKLPGNTPGAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTS 133 (404)
T ss_pred CeEEEEEEecCCCCCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCcc
Confidence 46999999887532389999999999842 45
Q ss_pred ---CCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHHH
Q 005260 355 ---VDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEE 406 (705)
Q Consensus 355 ---~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~ 406 (705)
.|+-+|+|++|.+++.|.+. + +++.+|.|++..+||.|..|+..++.+
T Consensus 134 ~~g~DmKgg~aa~l~a~~~l~~~---~-~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 134 VLGADNKAAIAVVMTLLENLTEN---E-VEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred ccccccHHHHHHHHHHHHHHHhc---C-CCCCCEEEEEEcccccccccHHHHHHh
Confidence 89999999999999988653 2 456799999999999998999988654
No 62
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=97.65 E-value=0.00017 Score=82.33 Aligned_cols=88 Identities=25% Similarity=0.197 Sum_probs=65.6
Q ss_pred eeeEEEEecCCC--CCCcEEEEeeccCCcCCC--------------------------C---CCChhHHHHHHHHHHHHH
Q 005260 324 IQNVIGIIPGTE--EPDRLVILGNHRDAWTFG--------------------------A---VDPNSGTAALLEVAQRLN 372 (705)
Q Consensus 324 ~~NVia~i~G~~--~p~~~ViigaH~Ds~~~G--------------------------A---~DnaSG~A~lLElAr~l~ 372 (705)
..||+++++|.. +..+.|++++|+|+++.| + .|+..|++++|++++.
T Consensus 46 ~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~-- 123 (477)
T TIGR01893 46 VGNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED-- 123 (477)
T ss_pred CCeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc--
Confidence 469999998753 224679999999987653 2 3999999999998763
Q ss_pred HhHHcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHHhhhccEEEEEEccC
Q 005260 373 KLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDS 423 (705)
Q Consensus 373 ~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~ 423 (705)
...+.++|.++++..||.|+.||..+..+.. +....+|+|.
T Consensus 124 -----~~~~~~~i~~~~~~dEE~g~~Gs~~l~~~~~-----~~~~~~~~d~ 164 (477)
T TIGR01893 124 -----NNLKHPPLELLFTVDEETGMDGALGLDENWL-----SGKILINIDS 164 (477)
T ss_pred -----CCCCCCCEEEEEEeccccCchhhhhcChhhc-----CCcEEEEecC
Confidence 1245679999999999999999999865431 2234566664
No 63
>PRK07907 hypothetical protein; Provisional
Probab=97.63 E-value=0.0003 Score=79.61 Aligned_cols=79 Identities=25% Similarity=0.265 Sum_probs=66.3
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~-----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~ 380 (705)
..||+|+++|.. +.+.|++.+|+|.++ .|+.|+-+|+|++|..++.| +.+
T Consensus 70 ~~nl~a~~~~~~-~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l------~~~ 142 (449)
T PRK07907 70 APAVIGTRPAPP-GAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL------GGD 142 (449)
T ss_pred CCEEEEEecCCC-CCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh------ccC
Confidence 479999998753 357899999999863 19999999999999999987 236
Q ss_pred CCCcEEEEEeCCccCCCCChHHHHHHHHH
Q 005260 381 PRRTIVLCNWDAEEYGLIGSTEWVEENRE 409 (705)
Q Consensus 381 p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~ 409 (705)
++++|.|++.+.||.|..|+.++++++..
T Consensus 143 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~~ 171 (449)
T PRK07907 143 LPVGVTVFVEGEEEMGSPSLERLLAEHPD 171 (449)
T ss_pred CCCcEEEEEEcCcccCCccHHHHHHhchH
Confidence 67899999999999998999999987543
No 64
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=97.62 E-value=0.0002 Score=79.35 Aligned_cols=80 Identities=24% Similarity=0.317 Sum_probs=66.0
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHhHHcCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------------GAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~-----------------------GA~DnaSG~A~lLElAr~l~~l~~~g~~ 380 (705)
..|++++++|.. +.+.|++.+|+|+++. |+.|+-.|++++|++++.|.+ .+.+
T Consensus 63 ~~nl~~~~~g~~-~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~---~~~~ 138 (400)
T PRK13983 63 RPNIVAKIPGGD-GKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMD---LGIR 138 (400)
T ss_pred CccEEEEecCCC-CCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHH---hCCC
Confidence 489999998864 3458999999999752 689999999999998888764 3557
Q ss_pred CCCcEEEEEeCCccCCCC-ChHHHHHHH
Q 005260 381 PRRTIVLCNWDAEEYGLI-GSTEWVEEN 407 (705)
Q Consensus 381 p~rtI~Fv~~~~EE~Gl~-GS~~~~~~~ 407 (705)
++++|+|++..+||.|.. |...+++++
T Consensus 139 ~~~~v~~~~~~dEE~g~~~g~~~~~~~~ 166 (400)
T PRK13983 139 PKYNLGLAFVSDEETGSKYGIQYLLKKH 166 (400)
T ss_pred CCCcEEEEEEeccccCCcccHHHHHhhc
Confidence 889999999999998874 788777664
No 65
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=97.61 E-value=0.00035 Score=76.43 Aligned_cols=78 Identities=22% Similarity=0.247 Sum_probs=65.2
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p 381 (705)
..||+|.+.|+. .+.|++.+|+|+++ .|+.|+-+|++++|.+++.|.+. +.
T Consensus 46 ~~nl~~~~~~~~--~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~-----~~ 118 (364)
T TIGR01892 46 KSNLVAVIGPSG--AGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE-----QL 118 (364)
T ss_pred cccEEEEecCCC--CCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc-----Cc
Confidence 579999996643 45799999999862 18999999999999999998753 34
Q ss_pred CCcEEEEEeCCccCCCCChHHHHHHHH
Q 005260 382 RRTIVLCNWDAEEYGLIGSTEWVEENR 408 (705)
Q Consensus 382 ~rtI~Fv~~~~EE~Gl~GS~~~~~~~~ 408 (705)
+++|.|++..+||.|..|+..++++..
T Consensus 119 ~~~v~~~~~~~EE~g~~G~~~~~~~~~ 145 (364)
T TIGR01892 119 KKPLHLALTADEEVGCTGAPKMIEAGA 145 (364)
T ss_pred CCCEEEEEEeccccCCcCHHHHHHhcC
Confidence 678999999999999999999887753
No 66
>PRK06837 acetylornithine deacetylase; Provisional
Probab=97.60 E-value=0.00022 Score=80.15 Aligned_cols=80 Identities=26% Similarity=0.274 Sum_probs=65.1
Q ss_pred eeeeEEEEecCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHhHHcCC
Q 005260 323 TIQNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------------GAVDPNSGTAALLEVAQRLNKLQKRGW 379 (705)
Q Consensus 323 ~~~NVia~i~G~~~p~~~ViigaH~Ds~~~-----------------------GA~DnaSG~A~lLElAr~l~~l~~~g~ 379 (705)
...||+|+++|..+..+.|++.+|+|+++. |+.|+-+|++++|..++.|.+ .|.
T Consensus 82 ~~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~---~~~ 158 (427)
T PRK06837 82 GAPNVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRA---AGL 158 (427)
T ss_pred CCceEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHH---cCC
Confidence 458999999886533578999999998742 888999999999999887754 466
Q ss_pred CCCCcEEEEEeCCccCCCCChHHHHH
Q 005260 380 KPRRTIVLCNWDAEEYGLIGSTEWVE 405 (705)
Q Consensus 380 ~p~rtI~Fv~~~~EE~Gl~GS~~~~~ 405 (705)
+|+++|.|++...||.|..|+...+.
T Consensus 159 ~~~~~i~~~~~~dEE~~g~g~~~~~~ 184 (427)
T PRK06837 159 APAARVHFQSVIEEESTGNGALSTLQ 184 (427)
T ss_pred CCCCcEEEEEEeccccCCHhHHHHHh
Confidence 78899999999999987778766554
No 67
>PRK09104 hypothetical protein; Validated
Probab=97.60 E-value=0.00032 Score=79.74 Aligned_cols=83 Identities=18% Similarity=0.160 Sum_probs=67.8
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC--------------------------C--CCCCChhHHHHHHHHHHHHHHhH
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT--------------------------F--GAVDPNSGTAALLEVAQRLNKLQ 375 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~--------------------------~--GA~DnaSG~A~lLElAr~l~~l~ 375 (705)
-.||+++++|+....+.|++.+|+|+++ + |+.|+-.|++++|++++.|.+.
T Consensus 68 ~~~l~a~~~g~~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~- 146 (464)
T PRK09104 68 HPMVVAHHEGPTGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAV- 146 (464)
T ss_pred CCEEEEEecCCCCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHh-
Confidence 3699999987543357899999999831 1 7899999999999999998764
Q ss_pred HcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHH
Q 005260 376 KRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENRE 409 (705)
Q Consensus 376 ~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~ 409 (705)
+-++..+|.|++.+.||.|-.|...|+.+...
T Consensus 147 --~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~ 178 (464)
T PRK09104 147 --TGSLPVRVTILFEGEEESGSPSLVPFLEANAE 178 (464)
T ss_pred --cCCCCCcEEEEEECccccCCccHHHHHHhhHH
Confidence 22456789999999999999999999987543
No 68
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.56 E-value=0.00034 Score=77.13 Aligned_cols=77 Identities=31% Similarity=0.385 Sum_probs=64.4
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHhHHcCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------------GAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~-----------------------GA~DnaSG~A~lLElAr~l~~l~~~g~~ 380 (705)
..|+++++ |.. .+.|++.+|+|+++. |+.|+-+|++++|..++.|.+ .+.+
T Consensus 48 ~~~l~a~~-g~~--~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~---~~~~ 121 (377)
T PRK08588 48 RANLVAEI-GSG--SPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKE---QGQL 121 (377)
T ss_pred CceEEEEe-CCC--CceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHH---cCCC
Confidence 36999998 443 368999999998742 677999999999999998765 3557
Q ss_pred CCCcEEEEEeCCccCCCCChHHHHHH
Q 005260 381 PRRTIVLCNWDAEEYGLIGSTEWVEE 406 (705)
Q Consensus 381 p~rtI~Fv~~~~EE~Gl~GS~~~~~~ 406 (705)
++++|.|++..+||.|..|+..++++
T Consensus 122 ~~~~i~l~~~~dEE~g~~G~~~~~~~ 147 (377)
T PRK08588 122 LNGTIRLLATAGEEVGELGAKQLTEK 147 (377)
T ss_pred CCCcEEEEEEcccccCchhHHHHHhc
Confidence 78999999999999998999999876
No 69
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00047 Score=74.54 Aligned_cols=79 Identities=30% Similarity=0.380 Sum_probs=69.5
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~-----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~ 380 (705)
.++++.+++|+++.-.-|++.+|.|.++ -|+.|.-+-.++.||.+|.|. .+|.+
T Consensus 74 ~~~~l~T~~GS~P~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~---~~g~k 150 (420)
T KOG2275|consen 74 KYVLLYTWLGSDPELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLK---ASGFK 150 (420)
T ss_pred eeEEEEEeeCCCCCccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHH---hcCCC
Confidence 7899999999986568899999999873 199999999999999888764 47899
Q ss_pred CCCcEEEEEeCCccCC-CCChHHHHH
Q 005260 381 PRRTIVLCNWDAEEYG-LIGSTEWVE 405 (705)
Q Consensus 381 p~rtI~Fv~~~~EE~G-l~GS~~~~~ 405 (705)
|+|||...|-.+||.| ..|...+++
T Consensus 151 p~Rti~lsfvpDEEi~G~~Gm~~fa~ 176 (420)
T KOG2275|consen 151 PKRTIHLSFVPDEEIGGHIGMKEFAK 176 (420)
T ss_pred cCceEEEEecCchhccCcchHHHHhh
Confidence 9999999999999986 899999987
No 70
>PRK07473 carboxypeptidase; Provisional
Probab=97.51 E-value=0.00035 Score=77.16 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=66.2
Q ss_pred eeEEEEecCCCCCCcEEEEeeccCCcC-------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcE
Q 005260 325 QNVIGIIPGTEEPDRLVILGNHRDAWT-------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTI 385 (705)
Q Consensus 325 ~NVia~i~G~~~p~~~ViigaH~Ds~~-------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI 385 (705)
.||+++++|.....+.|++.+|+|+++ .|+.|.-+|++++|..++.|.+. +.+++.+|
T Consensus 62 ~~~~~~~~~~~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~---~~~~~~~v 138 (376)
T PRK07473 62 DCVRARFPHPRQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARA---GITTPLPI 138 (376)
T ss_pred CeEEEEeCCCCCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHc---CCCCCCCE
Confidence 489999976433356799999999762 19999999999999999988653 33456789
Q ss_pred EEEEeCCccCCCCChHHHHHHHH
Q 005260 386 VLCNWDAEEYGLIGSTEWVEENR 408 (705)
Q Consensus 386 ~Fv~~~~EE~Gl~GS~~~~~~~~ 408 (705)
.|++...||.|..|+..++++..
T Consensus 139 ~~~~~~dEE~g~~g~~~~~~~~~ 161 (376)
T PRK07473 139 TVLFTPDEEVGTPSTRDLIEAEA 161 (376)
T ss_pred EEEEeCCcccCCccHHHHHHHhh
Confidence 99999999999999999998653
No 71
>PRK08262 hypothetical protein; Provisional
Probab=97.51 E-value=0.0005 Score=78.58 Aligned_cols=80 Identities=30% Similarity=0.404 Sum_probs=66.7
Q ss_pred eeEEEEecCCCCCCcEEEEeeccCCcC-------------------------CCCCCChhHHHHHHHHHHHHHHhHHcCC
Q 005260 325 QNVIGIIPGTEEPDRLVILGNHRDAWT-------------------------FGAVDPNSGTAALLEVAQRLNKLQKRGW 379 (705)
Q Consensus 325 ~NVia~i~G~~~p~~~ViigaH~Ds~~-------------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~ 379 (705)
.|+++.++|.....+.|++.+|+|+++ .|+.|+-+|++++|.+++.|.+. +.
T Consensus 98 ~~vv~~~~g~~~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~---~~ 174 (486)
T PRK08262 98 HSLLYTWKGSDPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQ---GF 174 (486)
T ss_pred ccEEEEEECCCCCCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHc---CC
Confidence 689999988753227899999999863 18999999999999999988753 45
Q ss_pred CCCCcEEEEEeCCccCCCCChHHHHHHH
Q 005260 380 KPRRTIVLCNWDAEEYGLIGSTEWVEEN 407 (705)
Q Consensus 380 ~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~ 407 (705)
+++++|+|++..+||.|..|+.++++..
T Consensus 175 ~l~~~I~llf~~dEE~g~~G~~~l~~~l 202 (486)
T PRK08262 175 QPRRTIYLAFGHDEEVGGLGARAIAELL 202 (486)
T ss_pred CCCCeEEEEEecccccCCcCHHHHHHHH
Confidence 6788999999999999988999888654
No 72
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.46 E-value=0.00043 Score=77.64 Aligned_cols=79 Identities=23% Similarity=0.225 Sum_probs=64.5
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC---------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT---------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPR 382 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~---------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~ 382 (705)
..|++|+++|.. +++.|++.+|+|+++ .|+.|+-+|++++|..++.|.+. +++++
T Consensus 71 ~~nlia~~~g~~-~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~---~~~~~ 146 (427)
T PRK13013 71 RWNLVARRQGAR-DGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAV---YPDFA 146 (427)
T ss_pred cceEEEEecCCC-CCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHh---CCCCC
Confidence 469999998864 357899999999853 18999999999999999988653 56778
Q ss_pred CcEEEEEeCCccCCCCChHHHHHH
Q 005260 383 RTIVLCNWDAEEYGLIGSTEWVEE 406 (705)
Q Consensus 383 rtI~Fv~~~~EE~Gl~GS~~~~~~ 406 (705)
++|+|++..+||.|-.|...|+.+
T Consensus 147 ~~v~~~~~~dEE~g~~~g~~~l~~ 170 (427)
T PRK13013 147 GSIEISGTADEESGGFGGVAYLAE 170 (427)
T ss_pred ccEEEEEEeccccCChhHHHHHHh
Confidence 999999999999887655555554
No 73
>PRK07338 hypothetical protein; Provisional
Probab=97.40 E-value=0.00047 Score=76.69 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=65.8
Q ss_pred eeEEEEecCCCCCCcEEEEeeccCCcCC-------------------CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcE
Q 005260 325 QNVIGIIPGTEEPDRLVILGNHRDAWTF-------------------GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTI 385 (705)
Q Consensus 325 ~NVia~i~G~~~p~~~ViigaH~Ds~~~-------------------GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI 385 (705)
.||+|+++|.. .+.|++.+|+|+++. |+.|.-+|++++|..++.|.+ .+.+++++|
T Consensus 81 ~nl~a~~~~~~--~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~---~~~~~~~~i 155 (402)
T PRK07338 81 PALHVSVRPEA--PRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFER---SPLADKLGY 155 (402)
T ss_pred CeEEEEECCCC--CccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHh---cCCCCCCCE
Confidence 69999997643 235999999998731 789999999999999998864 345677899
Q ss_pred EEEEeCCccCCCCChHHHHHHHH
Q 005260 386 VLCNWDAEEYGLIGSTEWVEENR 408 (705)
Q Consensus 386 ~Fv~~~~EE~Gl~GS~~~~~~~~ 408 (705)
.|++..+||.|..|+..++++..
T Consensus 156 ~~~~~~dEE~g~~g~~~~~~~~~ 178 (402)
T PRK07338 156 DVLINPDEEIGSPASAPLLAELA 178 (402)
T ss_pred EEEEECCcccCChhhHHHHHHHh
Confidence 99999999999999999988764
No 74
>PRK05469 peptidase T; Provisional
Probab=97.40 E-value=0.00065 Score=75.82 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=63.7
Q ss_pred eeeEEEEecCCC-CCCcEEEEeeccCCcCC------------------------------------------------CC
Q 005260 324 IQNVIGIIPGTE-EPDRLVILGNHRDAWTF------------------------------------------------GA 354 (705)
Q Consensus 324 ~~NVia~i~G~~-~p~~~ViigaH~Ds~~~------------------------------------------------GA 354 (705)
..||+|.++|+. ++.+.|++-+|+|+++. |+
T Consensus 55 ~~~v~~~~~g~~~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~ 134 (408)
T PRK05469 55 NGYVMATLPANVDKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGT 134 (408)
T ss_pred CeEEEEEecCCCCCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCC
Confidence 468999999863 23588999999999831 44
Q ss_pred ----CCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHH
Q 005260 355 ----VDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVE 405 (705)
Q Consensus 355 ----~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~ 405 (705)
.|+-+|+|++|.+++.|.+. +..|+.+|+|++-.+||.| .|+..++.
T Consensus 135 ~~lg~D~Kgglaa~l~a~~~l~~~---~~~~~g~v~~~f~~dEE~g-~Ga~~~~~ 185 (408)
T PRK05469 135 TLLGADDKAGIAEIMTALEYLIAH---PEIKHGDIRVAFTPDEEIG-RGADKFDV 185 (408)
T ss_pred EeecccchHHHHHHHHHHHHHHhC---CCCCCCCEEEEEecccccC-CCHHHhhh
Confidence 89999999999999988653 3356789999999999998 79988763
No 75
>PRK07079 hypothetical protein; Provisional
Probab=97.38 E-value=0.0011 Score=75.40 Aligned_cols=83 Identities=20% Similarity=0.126 Sum_probs=68.1
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC-----------C-------------CCCCChhHHHHHHHHHHHHHHhHHcCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT-----------F-------------GAVDPNSGTAALLEVAQRLNKLQKRGW 379 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~-----------~-------------GA~DnaSG~A~lLElAr~l~~l~~~g~ 379 (705)
..||++.+.|.. +.+.|++.+|+|.++ + |+.|+-+|++++|..++.|.+. .+.
T Consensus 72 ~~~vva~~~~~~-~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~--~~~ 148 (469)
T PRK07079 72 GPFLIAERIEDD-ALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAA--RGG 148 (469)
T ss_pred CCEEEEEeCCCC-CCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHh--cCC
Confidence 469999986643 246899999999642 1 9999999999999999887532 245
Q ss_pred CCCCcEEEEEeCCccCCCCChHHHHHHHHH
Q 005260 380 KPRRTIVLCNWDAEEYGLIGSTEWVEENRE 409 (705)
Q Consensus 380 ~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~ 409 (705)
+++++|.|++-..||.|..|+.++++++..
T Consensus 149 ~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~ 178 (469)
T PRK07079 149 RLGFNVKLLIEMGEEIGSPGLAEVCRQHRE 178 (469)
T ss_pred CCCCCEEEEEECccccCCccHHHHHHHhHH
Confidence 788999999999999999999999988753
No 76
>PRK08201 hypothetical protein; Provisional
Probab=97.37 E-value=0.00095 Score=75.66 Aligned_cols=82 Identities=21% Similarity=0.164 Sum_probs=66.8
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~-----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~ 380 (705)
..||++++.|.. +.+.|++.+|+|.++ -|+.|+-+|+|++|++++.|.+. +.+
T Consensus 66 ~~~l~a~~~~~~-~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~---~~~ 141 (456)
T PRK08201 66 HPIVYADWLHAP-GKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKV---EGT 141 (456)
T ss_pred CCEEEEEecCCC-CCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHh---cCC
Confidence 358999987643 356899999999942 19999999999999999988653 225
Q ss_pred CCCcEEEEEeCCccCCCCChHHHHHHHHH
Q 005260 381 PRRTIVLCNWDAEEYGLIGSTEWVEENRE 409 (705)
Q Consensus 381 p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~ 409 (705)
++++|.|++...||.|-.|+..|++++..
T Consensus 142 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~~ 170 (456)
T PRK08201 142 LPVNVKFCIEGEEEIGSPNLDSFVEEEKD 170 (456)
T ss_pred CCCCEEEEEEcccccCCccHHHHHHhhHH
Confidence 67799999999999999999999987644
No 77
>PRK06915 acetylornithine deacetylase; Validated
Probab=97.37 E-value=0.00065 Score=76.14 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=65.8
Q ss_pred eeeeEEEEecCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCC
Q 005260 323 TIQNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGW 379 (705)
Q Consensus 323 ~~~NVia~i~G~~~p~~~ViigaH~Ds~~-----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~ 379 (705)
...||+|+++|... .+.|++.+|+|+++ .|+.|+-+|++++|.+++.|.+ .++
T Consensus 79 ~~~nlia~~~g~~~-~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~---~~~ 154 (422)
T PRK06915 79 DSPNIVATLKGSGG-GKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIE---SGI 154 (422)
T ss_pred CCceEEEEEcCCCC-CCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHH---cCC
Confidence 35899999988653 57899999999863 1888999999999998888765 356
Q ss_pred CCCCcEEEEEeCCccCCCCChHHHHHH
Q 005260 380 KPRRTIVLCNWDAEEYGLIGSTEWVEE 406 (705)
Q Consensus 380 ~p~rtI~Fv~~~~EE~Gl~GS~~~~~~ 406 (705)
+++.+|.|++..+||.|..|+...+.+
T Consensus 155 ~~~~~v~~~~~~dEE~g~~G~~~~~~~ 181 (422)
T PRK06915 155 ELKGDVIFQSVIEEESGGAGTLAAILR 181 (422)
T ss_pred CCCCcEEEEEecccccCCcchHHHHhc
Confidence 778899999999999888898876654
No 78
>PRK06446 hypothetical protein; Provisional
Probab=97.36 E-value=0.00087 Score=75.56 Aligned_cols=81 Identities=22% Similarity=0.191 Sum_probs=66.0
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~-----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~ 380 (705)
-.||+|++++. +.+.|++.+|+|.++ -|+.|+-+|++++|...+.|.+. + +
T Consensus 50 ~~~lia~~~~~--~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~---~-~ 123 (436)
T PRK06446 50 HPVVYGEINVG--AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDK---H-K 123 (436)
T ss_pred CCEEEEEecCC--CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHc---C-C
Confidence 47999999643 246799999999942 19999999999999998876532 2 5
Q ss_pred CCCcEEEEEeCCccCCCCChHHHHHHHHHh
Q 005260 381 PRRTIVLCNWDAEEYGLIGSTEWVEENREM 410 (705)
Q Consensus 381 p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~ 410 (705)
+..+|.|++...||.|..|+..|++++...
T Consensus 124 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~ 153 (436)
T PRK06446 124 LNVNVKFLYEGEEEIGSPNLEDFIEKNKNK 153 (436)
T ss_pred CCCCEEEEEEcccccCCHhHHHHHHHHHHH
Confidence 678999999999999999999999886543
No 79
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.31 E-value=0.0011 Score=73.07 Aligned_cols=78 Identities=23% Similarity=0.212 Sum_probs=63.0
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHhHHcCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------------GAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~-----------------------GA~DnaSG~A~lLElAr~l~~l~~~g~~ 380 (705)
..|+++++ |.. .+.|++.+|+|+++. |+.|+-+|++++|..++.|.+ .+.+
T Consensus 47 ~~n~~~~~-g~~--~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~---~~~~ 120 (375)
T PRK13009 47 VKNLWARR-GTE--GPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVA---AHPD 120 (375)
T ss_pred CcEEEEEe-cCC--CCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHH---hcCC
Confidence 46999987 652 578999999999641 777999999999999988754 3457
Q ss_pred CCCcEEEEEeCCccCC-CCChHHHHHHH
Q 005260 381 PRRTIVLCNWDAEEYG-LIGSTEWVEEN 407 (705)
Q Consensus 381 p~rtI~Fv~~~~EE~G-l~GS~~~~~~~ 407 (705)
++++|+|++..+||.| ..|+..+++..
T Consensus 121 ~~~~i~~~~~~~EE~~~~~G~~~~~~~~ 148 (375)
T PRK13009 121 HKGSIAFLITSDEEGPAINGTVKVLEWL 148 (375)
T ss_pred CCceEEEEEEeecccccccCHHHHHHHH
Confidence 7899999999999975 46998887653
No 80
>PRK07522 acetylornithine deacetylase; Provisional
Probab=97.31 E-value=0.0008 Score=74.29 Aligned_cols=78 Identities=23% Similarity=0.234 Sum_probs=65.0
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p 381 (705)
..||++++.|.. .+.|++.+|+|+++ .|+.|+-+|+|++|.+++.|.+. ++
T Consensus 52 ~~nv~a~~~~~~--~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~-----~~ 124 (385)
T PRK07522 52 KANLFATIGPAD--RGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA-----PL 124 (385)
T ss_pred cccEEEEeCCCC--CCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC-----CC
Confidence 479999996542 46899999999652 18999999999999999988764 45
Q ss_pred CCcEEEEEeCCccCCCCChHHHHHHHH
Q 005260 382 RRTIVLCNWDAEEYGLIGSTEWVEENR 408 (705)
Q Consensus 382 ~rtI~Fv~~~~EE~Gl~GS~~~~~~~~ 408 (705)
+++|.|++..+||.|..|+..++++..
T Consensus 125 ~~~i~~~~~~dEE~g~~G~~~l~~~~~ 151 (385)
T PRK07522 125 RRPLHLAFSYDEEVGCLGVPSMIARLP 151 (385)
T ss_pred CCCEEEEEEeccccCCccHHHHHHHhh
Confidence 789999999999998889999987643
No 81
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=97.29 E-value=0.00085 Score=74.63 Aligned_cols=80 Identities=26% Similarity=0.300 Sum_probs=65.4
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~-----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~ 380 (705)
..|++++++|.....+.|++.+|+|+++ .|+.|+-+|+|++|.+++.|.+. +.+
T Consensus 57 ~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~---~~~ 133 (400)
T TIGR01880 57 KPVVVLTWPGSNPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKAS---GFK 133 (400)
T ss_pred ceeEEEEEecCCCCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHc---CCC
Confidence 4689999988653236899999999873 18889999999999999988653 456
Q ss_pred CCCcEEEEEeCCccCCC-CChHHHHHH
Q 005260 381 PRRTIVLCNWDAEEYGL-IGSTEWVEE 406 (705)
Q Consensus 381 p~rtI~Fv~~~~EE~Gl-~GS~~~~~~ 406 (705)
++++|+|++..+||.|- .|..+++++
T Consensus 134 ~~~~v~l~~~~dEE~g~~~G~~~~~~~ 160 (400)
T TIGR01880 134 FKRTIHISFVPDEEIGGHDGMEKFAKT 160 (400)
T ss_pred CCceEEEEEeCCcccCcHhHHHHHHHh
Confidence 78999999999999874 599887765
No 82
>PRK09864 putative peptidase; Provisional
Probab=97.26 E-value=0.0027 Score=69.18 Aligned_cols=129 Identities=23% Similarity=0.258 Sum_probs=85.7
Q ss_pred CCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHHhhhccEEEEEEccCcc--------
Q 005260 354 AVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAV-------- 425 (705)
Q Consensus 354 A~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g-------- 425 (705)
|-||-.|+++|+|++|.+.+ +..+|.|++..-||.|+.|+..-+.... .++ .|-+|+..
T Consensus 173 alDnR~g~~~lle~l~~l~~-------~~~~vy~v~TvQEEvGlrGA~~aa~~i~----PDi--aIavDvt~~~d~p~~~ 239 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN-------PEITLYGVGSVEEEVGLRGAQTSAEHIK----PDV--VIVLDTAVAGDVPGID 239 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc-------CCCeEEEEEEcchhcchHHHHHHHhcCC----CCE--EEEEecccCCCCCCCc
Confidence 45899999999999998742 6799999999999999999986444332 233 45566442
Q ss_pred ---------cCCcc-----ccccChhHHHHHHHHHHHcCCCCCCccchhhccccCCCCCccccCCCCCCchHHHHh-cCC
Q 005260 426 ---------HEAGF-----HASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQ-HIG 490 (705)
Q Consensus 426 ---------~g~~l-----~~~~sp~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~g~~~SD~~~F~~-~~G 490 (705)
.|+.+ ..-.+|.+.+.+.+.+++..-|.. ......+++|-..+.. ..|
T Consensus 240 ~~~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q-----------------~~~~~~ggTDa~~i~~~~~G 302 (356)
T PRK09864 240 NIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQ-----------------FSTMKTGATDGGRYNVMGGG 302 (356)
T ss_pred ccccccccCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCce-----------------EEEcCCCCchHHHHHHhCCC
Confidence 22222 223457788888888887544422 1111114677766543 369
Q ss_pred ceEEEeeeCCCCCCCCCCccchHH
Q 005260 491 VPVADMSFGTGYPVYHSMYDDFIW 514 (705)
Q Consensus 491 IPs~~l~~~~~~p~yHt~~Dt~~~ 514 (705)
||++.++-. -.+-||+.-..+.
T Consensus 303 vpt~~isiP--~RY~Hs~~e~~~~ 324 (356)
T PRK09864 303 RPVVALCLP--TRYLHANSGMISK 324 (356)
T ss_pred CcEEEEeec--cCcCCCcceEeEH
Confidence 999999763 2356898877653
No 83
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=97.18 E-value=0.0013 Score=71.87 Aligned_cols=75 Identities=27% Similarity=0.234 Sum_probs=62.5
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC--------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEE
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT--------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCN 389 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~--------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~ 389 (705)
..|++|++.| . .+.|++.+|+|+++ .|+.|+-+|+|++|+.++.| . .+++++|.|++
T Consensus 48 ~~n~i~~~~~-~--~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~-----~~~~~~i~~~~ 118 (348)
T PRK04443 48 AGNARGPAGD-G--PPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E-----ALVRARVSFVG 118 (348)
T ss_pred CCcEEEEcCC-C--CCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c-----ccCCCCEEEEE
Confidence 3689999843 2 36899999999984 19999999999999999987 2 26788999999
Q ss_pred eCCccCCCCChHHHHHHH
Q 005260 390 WDAEEYGLIGSTEWVEEN 407 (705)
Q Consensus 390 ~~~EE~Gl~GS~~~~~~~ 407 (705)
..+||.|..|...++.+.
T Consensus 119 ~~dEE~g~~~~~~~l~~~ 136 (348)
T PRK04443 119 AVEEEAPSSGGARLVADR 136 (348)
T ss_pred EcccccCChhHHHHHHhc
Confidence 999999988888887654
No 84
>PRK05111 acetylornithine deacetylase; Provisional
Probab=97.09 E-value=0.0016 Score=71.99 Aligned_cols=76 Identities=21% Similarity=0.328 Sum_probs=62.2
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p 381 (705)
-.||+|++ |... +.|++.+|+|+++ .|+.|+-+|++++|++++.|.+. .+
T Consensus 60 ~~nvia~~-g~~~--~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~-----~~ 131 (383)
T PRK05111 60 KFNLLASL-GSGE--GGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT-----KL 131 (383)
T ss_pred CceEEEEe-CCCC--CeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc-----CC
Confidence 36999999 5432 3599999999862 18999999999999999988652 34
Q ss_pred CCcEEEEEeCCccCCCCChHHHHHHH
Q 005260 382 RRTIVLCNWDAEEYGLIGSTEWVEEN 407 (705)
Q Consensus 382 ~rtI~Fv~~~~EE~Gl~GS~~~~~~~ 407 (705)
+.+|+|++..+||.|..|+..++++.
T Consensus 132 ~~~i~~~~~~~EE~g~~G~~~~~~~~ 157 (383)
T PRK05111 132 KKPLYILATADEETSMAGARAFAEAT 157 (383)
T ss_pred CCCeEEEEEeccccCcccHHHHHhcC
Confidence 57899999999999988999988763
No 85
>PRK08652 acetylornithine deacetylase; Provisional
Probab=97.09 E-value=0.0014 Score=71.28 Aligned_cols=73 Identities=25% Similarity=0.270 Sum_probs=59.9
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC--------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEE
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT--------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCN 389 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~--------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~ 389 (705)
..|+++ |. .+.|++.+|+|+.+ .|+.|+-+|+|++|.+++.|.+. .++.+|.|++
T Consensus 47 ~~~~~~---~~---~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~-----~~~~~v~~~~ 115 (347)
T PRK08652 47 VINIVV---NS---KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE-----FEDLNVGIAF 115 (347)
T ss_pred eeEEEc---CC---CCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc-----ccCCCEEEEE
Confidence 456766 32 36799999999975 29999999999999999988743 3467999999
Q ss_pred eCCccCCCCChHHHHHHH
Q 005260 390 WDAEEYGLIGSTEWVEEN 407 (705)
Q Consensus 390 ~~~EE~Gl~GS~~~~~~~ 407 (705)
..+||.|..|+..+++++
T Consensus 116 ~~dEE~g~~G~~~~~~~~ 133 (347)
T PRK08652 116 VSDEEEGGRGSALFAERY 133 (347)
T ss_pred ecCcccCChhHHHHHHhc
Confidence 999999888999988764
No 86
>PRK07318 dipeptidase PepV; Reviewed
Probab=97.08 E-value=0.0018 Score=73.67 Aligned_cols=78 Identities=19% Similarity=0.150 Sum_probs=64.0
Q ss_pred eEEEEecCCCCCCcEEEEeeccCCcC---------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCc
Q 005260 326 NVIGIIPGTEEPDRLVILGNHRDAWT---------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRT 384 (705)
Q Consensus 326 NVia~i~G~~~p~~~ViigaH~Ds~~---------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rt 384 (705)
|+++.+++.. +.+.|++.+|+|.++ .|+.|+-+|++++|.+.+.|.+ .|++++++
T Consensus 68 n~~~~~~~~~-~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~---~g~~~~~~ 143 (466)
T PRK07318 68 NYAGHIEYGE-GEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKE---LGLPLSKK 143 (466)
T ss_pred CccceEEECC-CCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHH---cCCCCCcc
Confidence 7777765322 245799999999873 1999999999999999888765 46778889
Q ss_pred EEEEEeCCccCCCCChHHHHHHH
Q 005260 385 IVLCNWDAEEYGLIGSTEWVEEN 407 (705)
Q Consensus 385 I~Fv~~~~EE~Gl~GS~~~~~~~ 407 (705)
|.|++...||.|..|+.++++++
T Consensus 144 i~l~~~~DEE~g~~G~~~l~~~~ 166 (466)
T PRK07318 144 VRFIVGTDEESGWKCMDYYFEHE 166 (466)
T ss_pred EEEEEEcccccCchhHHHHHHhC
Confidence 99999999999999999998864
No 87
>PRK08554 peptidase; Reviewed
Probab=97.05 E-value=0.003 Score=71.26 Aligned_cols=92 Identities=21% Similarity=0.203 Sum_probs=68.7
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p 381 (705)
..|+++.+ |.. ++.|++.+|+|+++ .|+.|+-+|++++|..++.|.+. .+
T Consensus 52 ~~~l~~~~-~~~--~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~-----~~ 123 (438)
T PRK08554 52 YYAVYGEI-GEG--KPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE-----PL 123 (438)
T ss_pred ceEEEEEe-CCC--CCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc-----CC
Confidence 37999987 432 46799999999852 29999999999999999988652 35
Q ss_pred CCcEEEEEeCCccCCCCChHHHHHHHHHhhhccEEEEEEccCc
Q 005260 382 RRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSA 424 (705)
Q Consensus 382 ~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~ 424 (705)
+++|+|++.+.||.|..|+..+++..... ..+..+.|+.|..
T Consensus 124 ~~~i~l~~~~dEE~g~~~~~~~~~~~~~~-~~~~~~~iv~Ept 165 (438)
T PRK08554 124 NGKVIFAFTGDEEIGGAMAMHIAEKLREE-GKLPKYMINADGI 165 (438)
T ss_pred CCCEEEEEEcccccCccccHHHHHHHHhc-CCCCCEEEEeCCC
Confidence 78899999999999887787666654322 1234456777764
No 88
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=97.04 E-value=0.0021 Score=73.14 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=63.0
Q ss_pred eEEEEecCCCCCCcEEEEeeccCCcC---------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCc
Q 005260 326 NVIGIIPGTEEPDRLVILGNHRDAWT---------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRT 384 (705)
Q Consensus 326 NVia~i~G~~~p~~~ViigaH~Ds~~---------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rt 384 (705)
|+++.+.+.. +++.|++.+|+|.++ -|+.|+-+|++++|..+++|.+ .+.+++++
T Consensus 67 ~~~~~~~~~~-~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~---~~~~~~~~ 142 (466)
T TIGR01886 67 NYAGHVEYGA-GDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKE---LGLPPSKK 142 (466)
T ss_pred CCceeEEecC-CCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHH---hCCCCCCC
Confidence 4455544332 257899999999852 1999999999999999888754 46678999
Q ss_pred EEEEEeCCccCCCCChHHHHHHHH
Q 005260 385 IVLCNWDAEEYGLIGSTEWVEENR 408 (705)
Q Consensus 385 I~Fv~~~~EE~Gl~GS~~~~~~~~ 408 (705)
|+|++-..||.|..|+.+|++++.
T Consensus 143 i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 143 IRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred EEEEEECccccCcccHHHHHhcCc
Confidence 999999999999999999998653
No 89
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.02 E-value=0.0024 Score=69.59 Aligned_cols=74 Identities=30% Similarity=0.404 Sum_probs=59.5
Q ss_pred eeEEEEecCCCCCCcEEEEeeccCCcC----------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEE
Q 005260 325 QNVIGIIPGTEEPDRLVILGNHRDAWT----------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLC 388 (705)
Q Consensus 325 ~NVia~i~G~~~p~~~ViigaH~Ds~~----------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv 388 (705)
.|+++++.+.. + ..|++.+|+|+++ .|+.|+.+|+|++|.+++.|. +++++|.|+
T Consensus 50 ~~~~~~~~~~~-~-~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~-------~~~~~i~~~ 120 (352)
T PRK13007 50 NSVVARTDLGR-P-SRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA-------EPAHDLTLV 120 (352)
T ss_pred CeEEEEccCCC-C-CeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh-------ccCCCeEEE
Confidence 58999995433 2 3599999999964 299999999999999999883 467899999
Q ss_pred EeCCccCCC--CChHHHHHHH
Q 005260 389 NWDAEEYGL--IGSTEWVEEN 407 (705)
Q Consensus 389 ~~~~EE~Gl--~GS~~~~~~~ 407 (705)
+.+.||.|- .|+..++.++
T Consensus 121 ~~~~EE~~~~~~G~~~~~~~~ 141 (352)
T PRK13007 121 FYDCEEVEAEANGLGRLAREH 141 (352)
T ss_pred EEecccccCCcccHHHHHHhc
Confidence 999999864 5887777654
No 90
>PRK06156 hypothetical protein; Provisional
Probab=96.97 E-value=0.0037 Score=72.10 Aligned_cols=89 Identities=18% Similarity=0.152 Sum_probs=68.4
Q ss_pred eeEE--EEecCCCCCCcEEEEeeccCCcCC---------------------------CCCCChhHHHHHHHHHHHHHHhH
Q 005260 325 QNVI--GIIPGTEEPDRLVILGNHRDAWTF---------------------------GAVDPNSGTAALLEVAQRLNKLQ 375 (705)
Q Consensus 325 ~NVi--a~i~G~~~p~~~ViigaH~Ds~~~---------------------------GA~DnaSG~A~lLElAr~l~~l~ 375 (705)
.|++ ++++|.. .+.|++.+|+|.++. |+.|+-.|++++|.+.+.|.+
T Consensus 96 ~~~v~~~~~~g~~--~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~-- 171 (520)
T PRK06156 96 DNRVLEIGLGGSG--SDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKD-- 171 (520)
T ss_pred CCeEEEEEecCCC--CCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHH--
Confidence 3544 6777743 357999999998631 789999999999998887754
Q ss_pred HcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHHhhhccEEEEEEccC
Q 005260 376 KRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDS 423 (705)
Q Consensus 376 ~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~ 423 (705)
.+.+++++|+|++...||.|..|+.+|++++. .....+|+|.
T Consensus 172 -~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~-----~~~~~~~~D~ 213 (520)
T PRK06156 172 -SGLPLARRIELLVYTTEETDGDPLKYYLERYT-----PPDYNITLDA 213 (520)
T ss_pred -cCCCCCceEEEEEecccccCchhHHHHHHhcC-----CCCeEEeeCC
Confidence 35577899999999999999999999987642 2334577775
No 91
>PRK13004 peptidase; Reviewed
Probab=96.96 E-value=0.0029 Score=70.37 Aligned_cols=76 Identities=25% Similarity=0.318 Sum_probs=60.8
Q ss_pred eeEEEEecCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHhHHcCCCC
Q 005260 325 QNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------------GAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (705)
Q Consensus 325 ~NVia~i~G~~~p~~~ViigaH~Ds~~~-----------------------GA~DnaSG~A~lLElAr~l~~l~~~g~~p 381 (705)
.|++|.+.|. .+.|++.+|+|+.+. |+.|+-+|++++|.+++.|.+. +.++
T Consensus 59 ~n~~a~~~~~---~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~---~~~~ 132 (399)
T PRK13004 59 GNVLGYIGHG---KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDL---GLDD 132 (399)
T ss_pred CeEEEEECCC---CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhc---CCCC
Confidence 5899999764 267999999998742 6778889999999999988653 4567
Q ss_pred CCcEEEEEeCCccC-CCCChHHHHHH
Q 005260 382 RRTIVLCNWDAEEY-GLIGSTEWVEE 406 (705)
Q Consensus 382 ~rtI~Fv~~~~EE~-Gl~GS~~~~~~ 406 (705)
+++|.|++..+||. |-.|+..++++
T Consensus 133 ~~~i~~~~~~~EE~~~g~~~~~~~~~ 158 (399)
T PRK13004 133 EYTLYVTGTVQEEDCDGLCWRYIIEE 158 (399)
T ss_pred CCeEEEEEEcccccCcchhHHHHHHh
Confidence 89999999999995 34577776654
No 92
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0043 Score=69.26 Aligned_cols=97 Identities=26% Similarity=0.271 Sum_probs=76.7
Q ss_pred eeeeEEEEecCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCC
Q 005260 323 TIQNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGW 379 (705)
Q Consensus 323 ~~~NVia~i~G~~~p~~~ViigaH~Ds~~-----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~ 379 (705)
...|+++++.|... ++.|++++|+|+++ -|+.|+-.++++++.+++.+... |.
T Consensus 61 ~~~n~~~~~~~~~~-~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~---~~ 136 (409)
T COG0624 61 GRPNLVARLGGGDG-GPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAA---GG 136 (409)
T ss_pred CceEEEEEecCCCC-CCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHh---CC
Confidence 35699999988753 48999999999973 19999999999999999987653 44
Q ss_pred CCCCcEEEEEeCCccCCCCChHHHHHHHHHhhhccEEEEEEccC
Q 005260 380 KPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDS 423 (705)
Q Consensus 380 ~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~ 423 (705)
.++++|+|++-+.||.|-.|...|++++...+..+..+.|..+.
T Consensus 137 ~~~~~v~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 137 ELPGDVRLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred CCCeEEEEEEEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 77899999999999999999999999876433333444444553
No 93
>PRK07205 hypothetical protein; Provisional
Probab=96.83 E-value=0.0044 Score=69.98 Aligned_cols=75 Identities=20% Similarity=0.106 Sum_probs=61.8
Q ss_pred eEEEEecCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCC
Q 005260 326 NVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPR 382 (705)
Q Consensus 326 NVia~i~G~~~p~~~ViigaH~Ds~~-----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~ 382 (705)
++++++ |.. .+.|++.+|+|.++ -|+.|+-.|+|++|...+.|.+ .|.+++
T Consensus 66 ~~~~~~-g~~--~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~---~~~~~~ 139 (444)
T PRK07205 66 YGYAEI-GQG--EELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLD---AGVQFN 139 (444)
T ss_pred EEEEEe-cCC--CcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHH---cCCCCC
Confidence 566665 543 46799999999963 1999999999999998887754 466888
Q ss_pred CcEEEEEeCCccCCCCChHHHHHH
Q 005260 383 RTIVLCNWDAEEYGLIGSTEWVEE 406 (705)
Q Consensus 383 rtI~Fv~~~~EE~Gl~GS~~~~~~ 406 (705)
++|+|++-+.||.|..|+..|++.
T Consensus 140 ~~i~l~~~~dEE~g~~g~~~~~~~ 163 (444)
T PRK07205 140 KRIRFIFGTDEETLWRCMNRYNEV 163 (444)
T ss_pred CcEEEEEECCcccCcccHHHHHhC
Confidence 999999999999998999988864
No 94
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=96.81 E-value=0.0048 Score=68.11 Aligned_cols=79 Identities=25% Similarity=0.291 Sum_probs=61.9
Q ss_pred eEEEEecCCCCCCcEEEEeeccCCcC-----------------------C----------CCCCChhHHHHHHHHHHHHH
Q 005260 326 NVIGIIPGTEEPDRLVILGNHRDAWT-----------------------F----------GAVDPNSGTAALLEVAQRLN 372 (705)
Q Consensus 326 NVia~i~G~~~p~~~ViigaH~Ds~~-----------------------~----------GA~DnaSG~A~lLElAr~l~ 372 (705)
||+|++.+.. .+.|++.+|+|+++ . |+.|+-+|+|++|.+++.|.
T Consensus 42 nvva~~~~~~--~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~ 119 (373)
T TIGR01900 42 NVLARTDFGK--ASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLD 119 (373)
T ss_pred EEEEecCCCC--CCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHh
Confidence 9999985432 46799999999852 1 88899999999999999885
Q ss_pred HhHHcCCCCCCcEEEEEeCCccCC--CCChHHHHHHH
Q 005260 373 KLQKRGWKPRRTIVLCNWDAEEYG--LIGSTEWVEEN 407 (705)
Q Consensus 373 ~l~~~g~~p~rtI~Fv~~~~EE~G--l~GS~~~~~~~ 407 (705)
+. +.+.+++.+|.|++..+||.| ..|+..+++++
T Consensus 120 ~~-~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~ 155 (373)
T TIGR01900 120 GR-APETELKHDLTLIAYDCEEVAAEKNGLGHIRDAH 155 (373)
T ss_pred hh-ccccCCCCCEEEEEEecccccCCCCCHHHHHHhC
Confidence 42 123467889999999999985 35888888764
No 95
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=96.78 E-value=0.0043 Score=67.27 Aligned_cols=73 Identities=25% Similarity=0.280 Sum_probs=60.2
Q ss_pred eeEEEEecCCCCCCcEEEEeeccCCcC--------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEe
Q 005260 325 QNVIGIIPGTEEPDRLVILGNHRDAWT--------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNW 390 (705)
Q Consensus 325 ~NVia~i~G~~~p~~~ViigaH~Ds~~--------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~ 390 (705)
.|+++.. |.. .+.|++.+|+|.++ .|+.|+-+|.|++|+..+.|.+. ..+|.|++.
T Consensus 40 ~~~~~~~-~~~--~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~-------~~~i~~~~~ 109 (336)
T TIGR01902 40 GNFILGK-GDG--HKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK-------GIKVIVSGL 109 (336)
T ss_pred CcEEEEe-CCC--CceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC-------CCcEEEEEE
Confidence 4788765 432 46899999999973 19999999999999999988542 358999999
Q ss_pred CCccCCCCChHHHHHHH
Q 005260 391 DAEEYGLIGSTEWVEEN 407 (705)
Q Consensus 391 ~~EE~Gl~GS~~~~~~~ 407 (705)
..||.|..|+.++++++
T Consensus 110 ~dEE~g~~G~~~~~~~~ 126 (336)
T TIGR01902 110 VDEESSSKGAREVIDKN 126 (336)
T ss_pred eCcccCCccHHHHHhhc
Confidence 99999999999988774
No 96
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=96.77 E-value=0.0041 Score=68.93 Aligned_cols=76 Identities=33% Similarity=0.368 Sum_probs=61.3
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCC----------------------CCCCChhHHHHHHHHHHHHHHhHHcCCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF----------------------GAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~----------------------GA~DnaSG~A~lLElAr~l~~l~~~g~~p 381 (705)
..|+++.. |.. ++.|++.+|+|+.+. |+.|+-.|++++|++++.|.+. +
T Consensus 63 ~~~~~~~~-~~~--~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~---~--- 133 (394)
T PRK08651 63 RPNLIARR-GSG--NPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPA---G--- 133 (394)
T ss_pred cceEEEEe-CCC--CceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhc---C---
Confidence 46788865 433 378999999997531 7789999999999999987542 2
Q ss_pred CCcEEEEEeCCccCCCCChHHHHHHHH
Q 005260 382 RRTIVLCNWDAEEYGLIGSTEWVEENR 408 (705)
Q Consensus 382 ~rtI~Fv~~~~EE~Gl~GS~~~~~~~~ 408 (705)
+++|+|++..+||.|..|+.+++++..
T Consensus 134 ~~~v~~~~~~~EE~g~~G~~~~~~~~~ 160 (394)
T PRK08651 134 DGNIELAIVPDEETGGTGTGYLVEEGK 160 (394)
T ss_pred CCCEEEEEecCccccchhHHHHHhccC
Confidence 689999999999998899999887653
No 97
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=96.62 E-value=0.0084 Score=67.85 Aligned_cols=66 Identities=23% Similarity=0.209 Sum_probs=56.7
Q ss_pred CcEEEEeeccCCcC---------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCC
Q 005260 338 DRLVILGNHRDAWT---------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYG 396 (705)
Q Consensus 338 ~~~ViigaH~Ds~~---------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~G 396 (705)
.+.|++.+|+|.++ .|+.|+-.|++++|.+++.|.+ .+.+|+++|+|++...||.|
T Consensus 67 ~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~g 143 (447)
T TIGR01887 67 EEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKE---LGLKLKKKIRFIFGTDEETG 143 (447)
T ss_pred CCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHH---cCCCCCCcEEEEEECCcccC
Confidence 35799999999763 1999999999999999988764 45678899999999999999
Q ss_pred CCChHHHHHH
Q 005260 397 LIGSTEWVEE 406 (705)
Q Consensus 397 l~GS~~~~~~ 406 (705)
..|+.+|+++
T Consensus 144 ~~g~~~~l~~ 153 (447)
T TIGR01887 144 WACIDYYFEH 153 (447)
T ss_pred cHhHHHHHHh
Confidence 9999999874
No 98
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=96.61 E-value=0.0074 Score=66.24 Aligned_cols=76 Identities=34% Similarity=0.362 Sum_probs=58.2
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCC-------------------CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCc
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-------------------GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRT 384 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~-------------------GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rt 384 (705)
..||+++++|.. +.+.|++.+|+|+++. |+ .+++|++|.+++.|.+.. .+++++
T Consensus 43 ~~~vva~~~~~~-~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~---~~~~a~~l~a~~~l~~~~---~~~~~~ 115 (363)
T TIGR01891 43 ATGVVATIGGGK-PGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH---DLHTAILLGTAKLLKKLA---DLLEGT 115 (363)
T ss_pred CcEEEEEEeCCC-CCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC---HHHHHHHHHHHHHHHhch---hhCCce
Confidence 378999997743 2468999999999752 22 267888888888876542 356789
Q ss_pred EEEEEeCCccCCCCChHHHHHHH
Q 005260 385 IVLCNWDAEEYGLIGSTEWVEEN 407 (705)
Q Consensus 385 I~Fv~~~~EE~Gl~GS~~~~~~~ 407 (705)
|.|++..+||.| .|+.+++++.
T Consensus 116 i~~~~~~dEE~~-~G~~~~~~~~ 137 (363)
T TIGR01891 116 VRLIFQPAEEGG-GGATKMIEDG 137 (363)
T ss_pred EEEEEeecCcCc-chHHHHHHCC
Confidence 999999999986 7998877653
No 99
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=96.49 E-value=0.028 Score=61.26 Aligned_cols=128 Identities=18% Similarity=0.172 Sum_probs=80.9
Q ss_pred CCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHHhhhccEEEEEEccCc---------c
Q 005260 355 VDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSA---------V 425 (705)
Q Consensus 355 ~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~---------g 425 (705)
.||-+|++++++++|.|.+ .++++.++|.|++...||.| .|+..-+. .++.-+|.+|+. +
T Consensus 182 ~D~K~G~a~~l~~~~~l~~---~~~~~~~~v~~~~t~qEEvG-~gaa~~i~-------pd~a~~i~vd~~~~~p~~~~lg 250 (343)
T TIGR03106 182 LDDKAGVAALLAALKAIVE---HKVPLPVDVHPLFTITEEVG-SGASHALP-------PDVAELVSVDNGTVAPGQNSSE 250 (343)
T ss_pred cccHHhHHHHHHHHHHHHh---cCCCCCceEEEEEECCcccC-ccchhccc-------HhhhccEEEEecccCCCCCcCC
Confidence 6899999999999998865 34578899999999999999 56422111 122223455533 2
Q ss_pred cCCcccc-----ccChhHHHHHHHHHHHcCCCCCCccchhhccccCCCCCccccCCCCCCchHHHHh-cCCceEEEeeeC
Q 005260 426 HEAGFHA-----SATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQ-HIGVPVADMSFG 499 (705)
Q Consensus 426 ~g~~l~~-----~~sp~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~~~~~~~~g~~~SD~~~F~~-~~GIPs~~l~~~ 499 (705)
.|+.+.+ -.+|.+.+.+.+++++..-|.. ......++||-..+.. ..|||++.++..
T Consensus 251 ~Gp~i~~~d~~~~~~~~l~~~l~~~A~~~~Ip~Q-----------------~~~~~~~gtDa~~~~~~~~Gi~t~~i~iP 313 (343)
T TIGR03106 251 HGVTIAMADSSGPFDYHLTRKLIRLCQDHGIPHR-----------------RDVFRYYRSDAASAVEAGHDIRTALVTFG 313 (343)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcE-----------------EEecCCCCChHHHHHHcCCCCCEEEeecc
Confidence 2223311 2357888888888887544422 1111115778776644 359999998763
Q ss_pred CCCCCCCCCccchH
Q 005260 500 TGYPVYHSMYDDFI 513 (705)
Q Consensus 500 ~~~p~yHt~~Dt~~ 513 (705)
- .+-|| +...+
T Consensus 314 ~--Ry~Hs-~e~~~ 324 (343)
T TIGR03106 314 L--DASHG-YERTH 324 (343)
T ss_pred c--cchhh-hhhcc
Confidence 2 24577 65544
No 100
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=96.43 E-value=0.0081 Score=64.95 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=42.0
Q ss_pred ChhHHHHHHHHhhcC--CCCCCCHhhHHHHHHHHHHHHHCCCceeeeEEEE
Q 005260 40 DNVSISHHLHTLTRR--PHVAGSEANAEAAAYVLSVFTSCSLESHIASYGV 88 (705)
Q Consensus 40 ~~~~i~~~L~~lss~--~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~y~v 88 (705)
..+-..++++.++.. +|.+||+++.++++||+++|+++|++++.++|..
T Consensus 29 ~~~~a~~~~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~ 79 (346)
T PRK10199 29 PGDFANTQARHIATFFPGRMTGSPAEMLSADYLRQQFQQMGYQSDIRTFNS 79 (346)
T ss_pred ccchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCCCceEeeeccc
Confidence 355567788888886 8999999999999999999999999988776653
No 101
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=96.37 E-value=0.0072 Score=65.86 Aligned_cols=61 Identities=28% Similarity=0.364 Sum_probs=52.1
Q ss_pred EEEEeeccCCcC--------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHH
Q 005260 340 LVILGNHRDAWT--------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVE 405 (705)
Q Consensus 340 ~ViigaH~Ds~~--------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~ 405 (705)
.|++.+|+|+++ .|+.|+-+|+|++|.+++.|.+. | .+|.|++..+||.|..|+.++++
T Consensus 62 ~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~---~----~~i~~~~~~dEE~g~~G~~~l~~ 134 (346)
T PRK00466 62 DILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEK---G----IKVMVSGLADEESTSIGAKELVS 134 (346)
T ss_pred eEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHc---C----CCEEEEEEcCcccCCccHHHHHh
Confidence 499999999974 39999999999999999987542 3 35899999999999899999887
Q ss_pred HH
Q 005260 406 EN 407 (705)
Q Consensus 406 ~~ 407 (705)
+.
T Consensus 135 ~~ 136 (346)
T PRK00466 135 KG 136 (346)
T ss_pred cC
Confidence 64
No 102
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=96.35 E-value=0.014 Score=66.75 Aligned_cols=90 Identities=24% Similarity=0.235 Sum_probs=66.2
Q ss_pred eeeeEEEEecCCC--CCCcEEEEeeccCCcC--------------------------CCC---CCChhHHHHHHHHHHHH
Q 005260 323 TIQNVIGIIPGTE--EPDRLVILGNHRDAWT--------------------------FGA---VDPNSGTAALLEVAQRL 371 (705)
Q Consensus 323 ~~~NVia~i~G~~--~p~~~ViigaH~Ds~~--------------------------~GA---~DnaSG~A~lLElAr~l 371 (705)
...|+++.+++.. +..+.|++.+|+|+++ .|+ .|+..|+|++|.+.+
T Consensus 51 ~~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l~-- 128 (485)
T PRK15026 51 QVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLA-- 128 (485)
T ss_pred ecCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHHH--
Confidence 3469999987532 2246799999999873 165 499999999887642
Q ss_pred HHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHHhhhccEEEEEEccCc
Q 005260 372 NKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSA 424 (705)
Q Consensus 372 ~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~ 424 (705)
+.+ .+...|.|++...||.|+.||..+... ..+..+.||+|..
T Consensus 129 ----~~~-~~~~~i~~l~t~dEE~G~~ga~~l~~~-----~~~~~~~i~~e~~ 171 (485)
T PRK15026 129 ----DEN-VVHGPLEVLLTMTEEAGMDGAFGLQSN-----WLQADILINTDSE 171 (485)
T ss_pred ----hCC-CCCCCEEEEEEcccccCcHhHHHhhhc-----cCCcCEEEEeCCC
Confidence 223 246789999999999999999987432 1356678999875
No 103
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=96.30 E-value=0.015 Score=64.00 Aligned_cols=78 Identities=26% Similarity=0.285 Sum_probs=60.4
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCC-----------------------CCCCChhHHHHHHHHHHHHHHhHHcCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------------GAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~-----------------------GA~DnaSG~A~lLElAr~l~~l~~~g~~ 380 (705)
..|++++. |. +.+.|++.+|+|+++. |+.|+-.|++++|..++.+.+ .+.+
T Consensus 44 ~~~~~~~~-g~--~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~---~~~~ 117 (370)
T TIGR01246 44 TKNLWATR-GT--GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVK---KNPD 117 (370)
T ss_pred CceEEEEe-cC--CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHH---hcCC
Confidence 36899986 43 2578999999998531 777999999999998876654 3446
Q ss_pred CCCcEEEEEeCCccCC-CCChHHHHHHH
Q 005260 381 PRRTIVLCNWDAEEYG-LIGSTEWVEEN 407 (705)
Q Consensus 381 p~rtI~Fv~~~~EE~G-l~GS~~~~~~~ 407 (705)
++.+|+|++..+||.| ..|+...++..
T Consensus 118 ~~~~v~~~~~~dEE~~~~~G~~~~~~~~ 145 (370)
T TIGR01246 118 HKGSISLLITSDEEGTAIDGTKKVVETL 145 (370)
T ss_pred CCCcEEEEEEeccccCCCcCHHHHHHHH
Confidence 6789999999999976 46999877643
No 104
>PLN02693 IAA-amino acid hydrolase
Probab=96.25 E-value=0.014 Score=65.98 Aligned_cols=78 Identities=35% Similarity=0.403 Sum_probs=59.8
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCCC----------------CCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEE
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTFG----------------AVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVL 387 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~G----------------A~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~F 387 (705)
..||+|++ |.. +.+.|++.+|+|+.+.+ +.|--+++|++|.+++.|.+.. .+.+.+|+|
T Consensus 90 ~~~via~~-g~~-~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~---~~~~g~V~~ 164 (437)
T PLN02693 90 ITGIIGYI-GTG-EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHR---HHLQGTVVL 164 (437)
T ss_pred CcEEEEEE-CCC-CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCc---ccCCceEEE
Confidence 48999999 432 25789999999998521 4445568999999999987652 234678999
Q ss_pred EEeCCccCCCCChHHHHHHH
Q 005260 388 CNWDAEEYGLIGSTEWVEEN 407 (705)
Q Consensus 388 v~~~~EE~Gl~GS~~~~~~~ 407 (705)
++-.+|| +..|+..++++.
T Consensus 165 if~pdEE-~~~Ga~~~i~~g 183 (437)
T PLN02693 165 IFQPAEE-GLSGAKKMREEG 183 (437)
T ss_pred EEEEccc-chhhHHHHHHCC
Confidence 9999999 557998888763
No 105
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=95.96 E-value=0.036 Score=60.47 Aligned_cols=98 Identities=22% Similarity=0.243 Sum_probs=76.4
Q ss_pred eeeeEEEEecCCCCCCcEEEEeeccCCcC--------------------------------------------CCCCCCh
Q 005260 323 TIQNVIGIIPGTEEPDRLVILGNHRDAWT--------------------------------------------FGAVDPN 358 (705)
Q Consensus 323 ~~~NVia~i~G~~~p~~~ViigaH~Ds~~--------------------------------------------~GA~Dna 358 (705)
--.||+|-++|. .+.+.||+.+|+|++. -|+.|--
T Consensus 64 gR~nv~AlVrg~-~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMK 142 (553)
T COG4187 64 GRRNVFALVRGG-TSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMK 142 (553)
T ss_pred ccceeEEEEecC-CCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhh
Confidence 447999999994 4589999999999981 2999999
Q ss_pred hHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHH---hhhccEEEEEEccCcc
Q 005260 359 SGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENRE---MLASRAVAYLNIDSAV 425 (705)
Q Consensus 359 SG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~---~l~~~~va~iNlD~~g 425 (705)
||.|+-|.+-..|++-. ..+-+|.|++...||....|.++-+..... ...-...+.||+|.++
T Consensus 143 sGlav~la~L~~fa~~~----~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~ 208 (553)
T COG4187 143 SGLAVHLACLEEFAART----DRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTS 208 (553)
T ss_pred hhhHHHHHHHHHHhhCC----CCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEecccccc
Confidence 99999988877776531 335689999999999888888876655432 2233577889999874
No 106
>PLN02280 IAA-amino acid hydrolase
Probab=95.96 E-value=0.022 Score=64.99 Aligned_cols=76 Identities=25% Similarity=0.229 Sum_probs=58.5
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcCC-----------------CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEE
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIV 386 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~~-----------------GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~ 386 (705)
..||+|++ |... ++.|++-+|+|+++. |-+-++ ++|++|.+++.|.+. +.+++-+|+
T Consensus 140 ~~~vva~~-g~~~-~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~-~~A~~l~a~~~L~~~---~~~~~g~V~ 213 (478)
T PLN02280 140 KTGIRAWI-GTGG-PPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDA-HVAMLLGAAKILKSR---EHLLKGTVV 213 (478)
T ss_pred CCEEEEEE-CCCC-CCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcH-HHHHHHHHHHHHHhc---cccCCceEE
Confidence 46999998 6433 478999999999863 122233 899999999988754 225677999
Q ss_pred EEEeCCccCCCCChHHHHHH
Q 005260 387 LCNWDAEEYGLIGSTEWVEE 406 (705)
Q Consensus 387 Fv~~~~EE~Gl~GS~~~~~~ 406 (705)
|++-.+||.|. |+.+.+++
T Consensus 214 ~if~pdEE~g~-Ga~~li~~ 232 (478)
T PLN02280 214 LLFQPAEEAGN-GAKRMIGD 232 (478)
T ss_pred EEecccccccc-hHHHHHHC
Confidence 99999999985 99888775
No 107
>PRK02256 putative aminopeptidase 1; Provisional
Probab=95.70 E-value=0.066 Score=60.44 Aligned_cols=152 Identities=21% Similarity=0.165 Sum_probs=88.9
Q ss_pred EEeeccCCcCCCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHH----HHHHHhhhccE--
Q 005260 342 ILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWV----EENREMLASRA-- 415 (705)
Q Consensus 342 iigaH~Ds~~~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~----~~~~~~l~~~~-- 415 (705)
++|.+.+=...++-||-.|+.+++|..+.+. .+..++++++|+-||.|..|++-=. ++....+...+
T Consensus 246 ~~G~~~efI~s~rLDNr~~~~~~leal~~~~-------~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~~~l~Ri~~~~~p 318 (462)
T PRK02256 246 DVGLDRSLIGAYGQDDRVCAYTSLEALLELE-------NPEKTAVVLLVDKEEIGSEGNTGAQSRFFENFVAELLAKTEG 318 (462)
T ss_pred eeccccceeeccccccHHHHHHHHHHHHhcc-------cCCCeEEEEEEcccccCCcchhhhcchhHHHHHHHHHHhcCC
Confidence 4455544444578899999999999887542 3567999999999999987665422 11111111100
Q ss_pred -------------EEEEEccCccc-------------------CCccc-c-------cc---ChhHHHHHHHHHHHcCCC
Q 005260 416 -------------VAYLNIDSAVH-------------------EAGFH-A-------SA---TPQLDELLKQAAKQVQDP 452 (705)
Q Consensus 416 -------------va~iNlD~~g~-------------------g~~l~-~-------~~---sp~l~~l~~~~~~~v~~p 452 (705)
-..|.+|++-. |..+. . .+ ++.+...+.+.+++..-|
T Consensus 319 d~~~~~~~~~~~~S~~IS~Dvaha~hPn~~~~~~~~~~~~Lg~GpvIk~~d~~~~~y~t~~~~~~~~~~i~~iA~~~~Ip 398 (462)
T PRK02256 319 NYSDLKLRRALANSKALSADVSAAFDPNYPSVHEKQNAAYLGYGVVFTKYTGSRGKYGANDANAEFVAEVRNLFNKNNVV 398 (462)
T ss_pred CcchHHHHHHHhccEEEEEeCCCCCCCCCCcccCcccCccCCCCcEEEEEcCCCCcccccCCCHHHHHHHHHHHHHcCCC
Confidence 14577776521 22221 1 12 566777777777765443
Q ss_pred CCCccchhhccccCCCCCccccCCCCCCchHHHHhcCCceEEEeeeCCCCCCCCCCccchHHH
Q 005260 453 DNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQHIGVPVADMSFGTGYPVYHSMYDDFIWM 515 (705)
Q Consensus 453 ~~~~~~l~~~~~~~~~~~~~~~~g~~~SD~~~F~~~~GIPs~~l~~~~~~p~yHt~~Dt~~~l 515 (705)
.. ..+ . .+.+..+ +++| .|.+.+.|||+++++-. --+-||+..+...-
T Consensus 399 ~Q---~~~---~-----~r~d~~~-GgTi-g~~~s~~Gi~tvdiGiP--~l~MHS~rE~~~~~ 446 (462)
T PRK02256 399 WQ---TAE---L-----GKVDQGG-GGTI-AKFLANYGMEVIDCGVA--LLSMHSPFEIASKA 446 (462)
T ss_pred EE---EEE---e-----ecCCCCC-cChH-HHHHcCCCCcEEEechh--hhccccHHHHhhHH
Confidence 21 100 0 0112223 5777 56666789999999742 22468988776543
No 108
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=95.69 E-value=0.038 Score=61.35 Aligned_cols=76 Identities=25% Similarity=0.312 Sum_probs=57.6
Q ss_pred eeEEEEecCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCC
Q 005260 325 QNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (705)
Q Consensus 325 ~NVia~i~G~~~p~~~ViigaH~Ds~~-----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p 381 (705)
.||++.+ |.. .+.|++.+|+|+++ .|+.|+-.|++++|.+++.|.+ .+..+
T Consensus 57 ~~v~~~~-g~~--~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~---~~~~~ 130 (395)
T TIGR03526 57 GNVLGYI-GHG--PKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKD---LGLLD 130 (395)
T ss_pred CcEEEEe-CCC--CCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHH---cCCCC
Confidence 5899988 543 36799999999863 2899999999999999998765 35567
Q ss_pred CCcEEEEEeCCccC-CCCChHHHHHH
Q 005260 382 RRTIVLCNWDAEEY-GLIGSTEWVEE 406 (705)
Q Consensus 382 ~rtI~Fv~~~~EE~-Gl~GS~~~~~~ 406 (705)
+++|.|++..+||. +-.|+..++++
T Consensus 131 ~~~v~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03526 131 DYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred CceEEEEEecccccCCcHhHHHHHhc
Confidence 78999988888883 33455555543
No 109
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.44 E-value=0.037 Score=60.93 Aligned_cols=94 Identities=24% Similarity=0.197 Sum_probs=66.8
Q ss_pred EEeEEEecCCChhc-hHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCCCCCCCCCCCCcCCCCCCC
Q 005260 144 IGPVVYVNYGRVED-YVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFPDDKWM 222 (705)
Q Consensus 144 ~g~lVyv~~G~~~D-~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP~~~~~ 222 (705)
.+.+-+.+.+.+-| ... ....++||++++-.|+|.+-.|++.|+++||.|++++++..|.-. |
T Consensus 72 ~a~~~~~a~~~pld~cs~---~~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~--------~----- 135 (541)
T KOG2442|consen 72 AADIPHLAQVDPLDSCST---LQSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLF--------M----- 135 (541)
T ss_pred ccccchhhhcCCccccCC---CCccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhcc--------C-----
Confidence 35555666666544 221 134699999999999999999999999999999999998554321 0
Q ss_pred CCCCceeeeeecCCCCCCCCCCCCCCcccccchHHHhhcCCCCCCCcccCCHHHHHHHHHHcC
Q 005260 223 PPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIG 285 (705)
Q Consensus 223 p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~p~IP~~~is~~~a~~Ll~~l~ 285 (705)
.-|++.+ ..--+||++-|+++++..|.+...
T Consensus 136 ------------~~~~~~~--------------------~~dv~IPv~mi~~~~~~~l~~~~~ 166 (541)
T KOG2442|consen 136 ------------PCGNKET--------------------SLDVTIPVAMISYSDGRDLNKSTR 166 (541)
T ss_pred ------------CCCCCCc--------------------cccccceEEEEEhhhHHHHHhhhc
Confidence 0122211 123489999999999999997653
No 110
>PRK08737 acetylornithine deacetylase; Provisional
Probab=95.30 E-value=0.055 Score=59.53 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=55.1
Q ss_pred eeeEEEEecCCCCCCcEEEEeeccCCcC---------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCC
Q 005260 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT---------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPR 382 (705)
Q Consensus 324 ~~NVia~i~G~~~p~~~ViigaH~Ds~~---------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~ 382 (705)
..|+++. +|. +.|++.+|+|+++ .|+.|.-+|+|++|..++. +.
T Consensus 54 ~~nli~~-~g~----~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~----------~~ 118 (364)
T PRK08737 54 AVSLYAV-RGT----PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA----------GD 118 (364)
T ss_pred ceEEEEE-cCC----CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc----------cC
Confidence 4689986 453 3599999999963 1999999999999988763 24
Q ss_pred CcEEEEEeCCccCCC-CChHHHHHHH
Q 005260 383 RTIVLCNWDAEEYGL-IGSTEWVEEN 407 (705)
Q Consensus 383 rtI~Fv~~~~EE~Gl-~GS~~~~~~~ 407 (705)
.+|.|++...||.|. .|+..+++..
T Consensus 119 ~~v~~~~~~dEE~g~~~g~~~~~~~~ 144 (364)
T PRK08737 119 GDAAFLFSSDEEANDPRCVAAFLARG 144 (364)
T ss_pred CCEEEEEEcccccCchhhHHHHHHhC
Confidence 689999999999886 6888888763
No 111
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=95.18 E-value=0.067 Score=59.40 Aligned_cols=75 Identities=24% Similarity=0.292 Sum_probs=56.3
Q ss_pred eeEEEEecCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCC
Q 005260 325 QNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (705)
Q Consensus 325 ~NVia~i~G~~~p~~~ViigaH~Ds~~-----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p 381 (705)
.|++|.+ |.. .+.|++.+|+|+++ .|+.|+-.|+|++|..++.|.+ .|.++
T Consensus 57 ~n~~~~~-g~~--~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~---~g~~~ 130 (395)
T TIGR03320 57 GNVLGYI-GHG--PKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKD---LGLLD 130 (395)
T ss_pred CCEEEEe-CCC--CcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHH---cCCCC
Confidence 5899988 532 36799999999852 2999999999999999998765 35567
Q ss_pred CCcEEEEEeCCccCCC-CChHHHHH
Q 005260 382 RRTIVLCNWDAEEYGL-IGSTEWVE 405 (705)
Q Consensus 382 ~rtI~Fv~~~~EE~Gl-~GS~~~~~ 405 (705)
..+|.|++..+||.+- .|+..+++
T Consensus 131 ~~~i~~~~~~dEE~~~g~~~~~~~~ 155 (395)
T TIGR03320 131 DYTLLVTGTVQEEDCDGLCWQYIIE 155 (395)
T ss_pred CceEEEEecccccccCchHHHHHHH
Confidence 7899999888888642 23344443
No 112
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=94.37 E-value=0.26 Score=55.85 Aligned_cols=145 Identities=17% Similarity=0.135 Sum_probs=85.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHHHHHHHHHhhhccEE----------------
Q 005260 353 GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAV---------------- 416 (705)
Q Consensus 353 GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~~~~~~~~~l~~~~v---------------- 416 (705)
++-||-.|+.++||..+.+.... +-.+.....+++|+-||.|..|++--.....+...+++.
T Consensus 248 ~rlDnr~~~~~~l~al~~~~~~~--~~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~~~~ 325 (465)
T PTZ00371 248 PRLDNLGSSFCAFKALTEAVESL--GENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDSFAK 325 (465)
T ss_pred ecchhHHHHHHHHHHHHhccccc--cCCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhHHHH
Confidence 56799999999999887543210 001445556666999999987765432222221111111
Q ss_pred -----EEEEccCccc-------------------CCccc------cccChhHHHHHHHHHHHcCCCCCCccchhhccccC
Q 005260 417 -----AYLNIDSAVH-------------------EAGFH------ASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGS 466 (705)
Q Consensus 417 -----a~iNlD~~g~-------------------g~~l~------~~~sp~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~ 466 (705)
..|.+|++-. |..+. ..+++.+..++.+.+++..-|- |.. ..
T Consensus 326 ~~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip~---Q~~----~~- 397 (465)
T PTZ00371 326 LMARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIPI---QEF----VV- 397 (465)
T ss_pred HHhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCCE---EEE----Ee-
Confidence 4577887522 22221 2345677778888877654432 111 00
Q ss_pred CCCCccccCCCCCCchHHHHh-cCCceEEEeeeCCCCCCCCCCccchHHH
Q 005260 467 SNSPVIGRLGGGGSDYAAFIQ-HIGVPVADMSFGTGYPVYHSMYDDFIWM 515 (705)
Q Consensus 467 ~~~~~~~~~g~~~SD~~~F~~-~~GIPs~~l~~~~~~p~yHt~~Dt~~~l 515 (705)
-...+ +|||-.|++. +.|||+++++-. --.-||+..+...-
T Consensus 398 -----~~d~~-~GsTig~i~~s~~Gi~tvDiGiP--~l~MHS~rE~~~~~ 439 (465)
T PTZ00371 398 -----KNDSP-CGSTIGPILSSNLGIRTVDIGIP--QLAMHSIREMCGVV 439 (465)
T ss_pred -----cCCCC-CcchHHHHHHhCCCCcEEEechh--hcccccHHHHccHH
Confidence 01223 6899999987 689999999642 22458988776543
No 113
>PRK02813 putative aminopeptidase 2; Provisional
Probab=93.72 E-value=0.54 Score=52.80 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=84.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCC---ChHH-HHHHHH---------------Hhhhc
Q 005260 353 GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLI---GSTE-WVEENR---------------EMLAS 413 (705)
Q Consensus 353 GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~---GS~~-~~~~~~---------------~~l~~ 413 (705)
++.||-.|+.++||..+.+. . ..++++++++-||.|.. |+.. |+++.. ..+..
T Consensus 231 ~~lDnr~~~~~~l~al~~~~-------~-~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~~ 302 (428)
T PRK02813 231 GRLDNLSSCHAGLEALLAAA-------S-DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALAR 302 (428)
T ss_pred ecchhHHHHHHHHHHHHhcC-------C-CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhCC
Confidence 57799999999999876531 2 67999999999999988 7763 222211 11111
Q ss_pred cEEEEEEccCccc-------------------CCcccc------ccChhHHHHHHHHHHHcCCCCCCccchhhccccCCC
Q 005260 414 RAVAYLNIDSAVH-------------------EAGFHA------SATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSN 468 (705)
Q Consensus 414 ~~va~iNlD~~g~-------------------g~~l~~------~~sp~l~~l~~~~~~~v~~p~~~~~~l~~~~~~~~~ 468 (705)
-..|.+|++-. |..+.. .+++.+..++.+.+++..-|.. .. ..
T Consensus 303 --s~~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~Q---~~----v~--- 370 (428)
T PRK02813 303 --SFLISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPYQ---EF----VN--- 370 (428)
T ss_pred --CeEEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCEE---EE----Ee---
Confidence 23566776522 111211 2456677777777776443321 11 00
Q ss_pred CCccccCCCCCCchHHHHh-cCCceEEEeeeCCCCCCCCCCccchHHH
Q 005260 469 SPVIGRLGGGGSDYAAFIQ-HIGVPVADMSFGTGYPVYHSMYDDFIWM 515 (705)
Q Consensus 469 ~~~~~~~g~~~SD~~~F~~-~~GIPs~~l~~~~~~p~yHt~~Dt~~~l 515 (705)
-...+ +|||-.|++. +.|||+++++-. --+-||+..+...-
T Consensus 371 ---~~d~~-gGstig~i~~s~~Gi~tvdiGiP--~l~MHS~~E~~~~~ 412 (428)
T PRK02813 371 ---RSDMP-CGSTIGPITAARLGIRTVDVGAP--MLAMHSARELAGVK 412 (428)
T ss_pred ---cCCCC-CccHHHHHHHhCCCCcEEEeChh--hcccccHHHHccHH
Confidence 01223 6899999987 579999999642 22468988776543
No 114
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=91.35 E-value=0.79 Score=52.61 Aligned_cols=95 Identities=20% Similarity=0.263 Sum_probs=70.8
Q ss_pred eeeEEEEecCCC-CCCcEEEEeeccCCcCCCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCChHH
Q 005260 324 IQNVIGIIPGTE-EPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTE 402 (705)
Q Consensus 324 ~~NVia~i~G~~-~p~~~ViigaH~Ds~~~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS~~ 402 (705)
..||+|.++... ...|.+|+.+.++.... .-|..|++.+|.++|.+++. .-| -+.|+|++.+. +..|.+.
T Consensus 3 G~nvy~i~rapR~d~tEaivl~~~~~~~~~--~~n~~~v~l~lal~~~~~~~--~~w--sKDii~l~~~~---~~~g~~a 73 (504)
T PF04114_consen 3 GTNVYGILRAPRGDGTEAIVLVVPWRDSDG--EYNAGGVALALALARYFRRQ--SYW--SKDIIFLFTDD---ELAGMQA 73 (504)
T ss_pred ceEEEEEEecCCCCCceeEEEEEecCCCCc--ccchhhHHHHHHHHHHhhhc--hhh--hccEEEEecCC---cchHHHH
Confidence 579999997543 33588999998875543 44689999999999999853 235 79999998764 4678899
Q ss_pred HHHHHHHh---------hh---ccEEEEEEccCcccC
Q 005260 403 WVEENREM---------LA---SRAVAYLNIDSAVHE 427 (705)
Q Consensus 403 ~~~~~~~~---------l~---~~~va~iNlD~~g~g 427 (705)
|++++... +. ..+.+-||+|..+..
T Consensus 74 wl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~ 110 (504)
T PF04114_consen 74 WLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDS 110 (504)
T ss_pred HHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCC
Confidence 99998654 11 246778888877654
No 115
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=89.81 E-value=0.39 Score=45.37 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=42.3
Q ss_pred eEEEecCCChhchHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecC
Q 005260 146 PVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDR 203 (705)
Q Consensus 146 ~lVyv~~G~~~D~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp 203 (705)
+||-+. -++-.++|.+ ++.+.|.|+|+..|+|.+-.|..+++++||.++|+ +|.
T Consensus 67 ~lV~ad--Pp~aC~elrN-~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiii-td~ 120 (193)
T KOG3920|consen 67 ELVLAD--PPHACEELRN-EIFAPDSVALMERGECSFLVKTLNGEKAGATAIII-TDS 120 (193)
T ss_pred ceeecC--ChhHHHHHhh-cccCCCcEEEEecCCceeeehhhhhhhcCceEEEE-ecC
Confidence 566542 2334666654 88999999999999999999999999999998876 453
No 116
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=88.66 E-value=1.7 Score=47.44 Aligned_cols=77 Identities=22% Similarity=0.328 Sum_probs=63.6
Q ss_pred ecCCCCCCcEEEEeeccCCcC-----------------------CCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEE
Q 005260 331 IPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVL 387 (705)
Q Consensus 331 i~G~~~p~~~ViigaH~Ds~~-----------------------~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~F 387 (705)
..|+++..+.|++..|+|-.+ -|+.||-.-++..+++.++++++ |.....+|+|
T Consensus 84 ~~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~---g~~lpvnv~f 160 (473)
T KOG2276|consen 84 VLGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQL---GIDLPVNVVF 160 (473)
T ss_pred cccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHh---CccccceEEE
Confidence 348877678999999998642 29999999999999999988765 4567899999
Q ss_pred EEeCCccCCCCChHHHHHHHHHh
Q 005260 388 CNWDAEEYGLIGSTEWVEENREM 410 (705)
Q Consensus 388 v~~~~EE~Gl~GS~~~~~~~~~~ 410 (705)
|+=+-||.|-.|=.+-++...+.
T Consensus 161 ~~EgmEEsgS~~L~~l~~~~kD~ 183 (473)
T KOG2276|consen 161 VFEGMEESGSEGLDELIEKEKDK 183 (473)
T ss_pred EEEechhccCccHHHHHHHHhhh
Confidence 99999999999888877765543
No 117
>PRK07338 hypothetical protein; Provisional
Probab=88.55 E-value=44 Score=36.96 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=32.1
Q ss_pred hhHHHHHHHHhhcCCCCCCC-HhhHHHHHHHHHHHHHCCCceeee
Q 005260 41 NVSISHHLHTLTRRPHVAGS-EANAEAAAYVLSVFTSCSLESHIA 84 (705)
Q Consensus 41 ~~~i~~~L~~lss~~r~aGt-~g~~~~a~~i~~~~~~~Gl~~~~~ 84 (705)
.+++.+.|..|.+.+=.++. +|..+.++||+++|+++|++++..
T Consensus 16 ~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~ 60 (402)
T PRK07338 16 QAPMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELI 60 (402)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 35566677777776644444 445789999999999999987654
No 118
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.20 E-value=0.71 Score=49.80 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=35.4
Q ss_pred CCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEEecCC
Q 005260 165 VVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRK 204 (705)
Q Consensus 165 gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~~dp~ 204 (705)
+-.....+||++.|+|.+..|+.+|+++|.+|+|+|+++.
T Consensus 75 ~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~ 114 (348)
T KOG4628|consen 75 STRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVG 114 (348)
T ss_pred CCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCC
Confidence 3456778999999999999999999999999999998764
No 119
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=84.18 E-value=4 Score=45.40 Aligned_cols=78 Identities=28% Similarity=0.340 Sum_probs=60.0
Q ss_pred eeEEEEecCCCCCCcEEEEeeccCCcCC-------------C---CCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEE
Q 005260 325 QNVIGIIPGTEEPDRLVILGNHRDAWTF-------------G---AVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLC 388 (705)
Q Consensus 325 ~NVia~i~G~~~p~~~ViigaH~Ds~~~-------------G---A~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv 388 (705)
.=|+|+++|.. |.+.|-+-|-+|..+. | |.==-.-++++|-.|+.|+++++ ..+-+|+|+
T Consensus 57 TGvva~~~~g~-~g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~~---~~~Gtv~~i 132 (392)
T COG1473 57 TGVVATLKGGK-PGPTIALRADMDALPIQEETGLPFASKNPGVMHACGHDGHTAILLGAALALAEHKD---NLPGTVRLI 132 (392)
T ss_pred eEEEEEEcCCC-CCCEEEEEeecccCccccccCCCcccCCCCCcccCCchHHHHHHHHHHHHHHhhhh---hCCcEEEEE
Confidence 34889998765 3569999999999861 2 11111457899999999998753 568999999
Q ss_pred EeCCccCCCCChHHHHHHH
Q 005260 389 NWDAEEYGLIGSTEWVEEN 407 (705)
Q Consensus 389 ~~~~EE~Gl~GS~~~~~~~ 407 (705)
+-.|||.+- |+...+++-
T Consensus 133 fQPAEE~~~-Ga~~mi~~G 150 (392)
T COG1473 133 FQPAEEGGG-GAKAMIEDG 150 (392)
T ss_pred ecccccccc-cHHHHHhcC
Confidence 999999877 998888764
No 120
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=83.68 E-value=4.1 Score=42.56 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=41.1
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeeEEE
Q 005260 38 LSDNVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIASYG 87 (705)
Q Consensus 38 ~i~~~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~y~ 87 (705)
..+..+++++|.-+- .+|..||+|..+.-+||.+.+++.|..++.+.|.
T Consensus 47 ~s~~~~~~~~L~p~l-v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~ 95 (338)
T KOG3946|consen 47 DSDWNRLWENLLPIL-VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFT 95 (338)
T ss_pred CCCHHHHHHhhhhhh-ccccCCCCccHHHHHHHHHHHHhcCceeeecccc
Confidence 567777887755543 5899999999999999999999999998877665
No 121
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=78.55 E-value=8.3 Score=43.06 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=36.7
Q ss_pred ChhHHHHHHHHhhcCCCCCCC-HhhHHHHHHHHHHHHHCCCceeeeE
Q 005260 40 DNVSISHHLHTLTRRPHVAGS-EANAEAAAYVLSVFTSCSLESHIAS 85 (705)
Q Consensus 40 ~~~~i~~~L~~lss~~r~aGt-~g~~~~a~~i~~~~~~~Gl~~~~~~ 85 (705)
..+++.+.|+.|.+.+-.++. ++..++++||++.|+++|++++..+
T Consensus 35 ~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~ 81 (410)
T PRK06133 35 EQPAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAP 81 (410)
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 455788888899888777765 3456899999999999999976543
No 122
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=73.32 E-value=5.9 Score=44.14 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=39.5
Q ss_pred CChhHHHHHHHHhhcCC--------CCCCCHhhHHHHHHHHHHHHHCCCceeee
Q 005260 39 SDNVSISHHLHTLTRRP--------HVAGSEANAEAAAYVLSVFTSCSLESHIA 84 (705)
Q Consensus 39 i~~~~i~~~L~~lss~~--------r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 84 (705)
++.+++.++|+.|.+.+ |.++|.++.++++||++.|+++|++++.+
T Consensus 7 ~~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~ 60 (412)
T PRK12893 7 INGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD 60 (412)
T ss_pred cCHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 56788899999998865 66788899999999999999999998653
No 123
>PRK08596 acetylornithine deacetylase; Validated
Probab=73.17 E-value=69 Score=35.81 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=34.4
Q ss_pred hHHHHHHHHhhcCCCCCCCH-hhHHHHHHHHHHHHHCCCceeeeE
Q 005260 42 VSISHHLHTLTRRPHVAGSE-ANAEAAAYVLSVFTSCSLESHIAS 85 (705)
Q Consensus 42 ~~i~~~L~~lss~~r~aGt~-g~~~~a~~i~~~~~~~Gl~~~~~~ 85 (705)
+++.+.|+.|.+.|=.++.. ++.++++||++.|+++|++++..+
T Consensus 13 ~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~ 57 (421)
T PRK08596 13 DELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWD 57 (421)
T ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56778888888877665543 567889999999999999876543
No 124
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.08 E-value=12 Score=42.96 Aligned_cols=78 Identities=19% Similarity=0.318 Sum_probs=57.8
Q ss_pred eeeeeEEEEecCCC-CCCcEEEEeeccCCcCCCCCCChhHHHHHHHHHHHHHHhHHcCCCCCCcEEEEEeCCccCCCCCh
Q 005260 322 ATIQNVIGIIPGTE-EPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGS 400 (705)
Q Consensus 322 ~~~~NVia~i~G~~-~p~~~ViigaH~Ds~~~GA~DnaSG~A~lLElAr~l~~l~~~g~~p~rtI~Fv~~~~EE~Gl~GS 400 (705)
-...||+|.+++.. ...|-+|+...++.-..+ |..|++.++.+|+.++.- .-| .+.|+|++.++ ...|-
T Consensus 118 y~G~NvyGilRAPRgdgtEsivl~vP~~~~~~~---~~~~v~l~lsla~~f~r~--~yW--sKDII~v~~d~---~~~g~ 187 (617)
T KOG3566|consen 118 YSGENVYGILRAPRGDGTESIVLVVPYGRSSGS---NSASVALLLSLADYFSRW--VYW--SKDIIFVFTDG---PALGL 187 (617)
T ss_pred cCCceEEEEEecCCCCCcceEEEEEecccCCCc---chhHHHHHHHHHHHhcCC--eee--cccEEEEEeCC---ccccH
Confidence 34789999998653 235788888888754333 377889999999887642 124 79999999998 45666
Q ss_pred HHHHHHHHH
Q 005260 401 TEWVEENRE 409 (705)
Q Consensus 401 ~~~~~~~~~ 409 (705)
..|++.+.+
T Consensus 188 ~AwLeaYhd 196 (617)
T KOG3566|consen 188 DAWLEAYHD 196 (617)
T ss_pred HHHHHHhhc
Confidence 899999876
No 125
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=70.34 E-value=8.1 Score=43.11 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=39.5
Q ss_pred CChhHHHHHHHHhhcCC-------CCCCCHhhHHHHHHHHHHHHHCCCceeee
Q 005260 39 SDNVSISHHLHTLTRRP-------HVAGSEANAEAAAYVLSVFTSCSLESHIA 84 (705)
Q Consensus 39 i~~~~i~~~L~~lss~~-------r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 84 (705)
++.+++.+++..|+..+ |.+.|+++.++++||.+.|+++|++++..
T Consensus 6 ~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~ 58 (414)
T PRK12890 6 INGERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRD 58 (414)
T ss_pred cCHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEc
Confidence 45678999999999765 45789999999999999999999998654
No 126
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=68.16 E-value=9.1 Score=42.74 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=40.8
Q ss_pred CCChhHHHHHHHHhhcC-C-------CCCCCHhhHHHHHHHHHHHHHCCCceeee
Q 005260 38 LSDNVSISHHLHTLTRR-P-------HVAGSEANAEAAAYVLSVFTSCSLESHIA 84 (705)
Q Consensus 38 ~i~~~~i~~~L~~lss~-~-------r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 84 (705)
.++.+++.++++.|.+. + |.+.|.++.++++||++.|+++|++++.+
T Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~ 57 (413)
T PRK09290 3 RIDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVD 57 (413)
T ss_pred CcCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 36788999999999986 3 66889999999999999999999998654
No 127
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=66.60 E-value=9.9 Score=42.51 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=39.4
Q ss_pred CChhHHHHHHHHhhcC---C-----CCCCCHhhHHHHHHHHHHHHHCCCceeee
Q 005260 39 SDNVSISHHLHTLTRR---P-----HVAGSEANAEAAAYVLSVFTSCSLESHIA 84 (705)
Q Consensus 39 i~~~~i~~~L~~lss~---~-----r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 84 (705)
++..++++.++.|++. | |.+.|+++.++++||++.|++.|++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~~ 60 (414)
T PRK12891 7 VDGERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRVD 60 (414)
T ss_pred cCHHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEC
Confidence 3456899999998873 2 89999999999999999999999998764
No 128
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=62.08 E-value=11 Score=42.24 Aligned_cols=53 Identities=9% Similarity=-0.007 Sum_probs=41.3
Q ss_pred hHHHHHHHHhhcC--------CCCCCCHhhHHHHHHHHHHHHHCCCceeeeEE-EEEEeeeC
Q 005260 42 VSISHHLHTLTRR--------PHVAGSEANAEAAAYVLSVFTSCSLESHIASY-GVSLTYPV 94 (705)
Q Consensus 42 ~~i~~~L~~lss~--------~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~y-~v~~~~P~ 94 (705)
.++++.|+.|++. .|++-|+.+.++.+|+.+.++++||+++.+.. .++..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~D~~gN~~~~~~g 64 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRFDDVGNLYGRLVG 64 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEEcCCCcEEEEecC
Confidence 4677777777763 38999999999999999999999999877653 34444443
No 129
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=58.73 E-value=1.8e+02 Score=32.41 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=32.8
Q ss_pred hhHHHHHHHHhhcCCCCCCC-HhhHHHHHHHHHHHHHCCCceeee
Q 005260 41 NVSISHHLHTLTRRPHVAGS-EANAEAAAYVLSVFTSCSLESHIA 84 (705)
Q Consensus 41 ~~~i~~~L~~lss~~r~aGt-~g~~~~a~~i~~~~~~~Gl~~~~~ 84 (705)
.+.+.+.|+.|-+.|=..+. .++.++++||++.|++.|++++..
T Consensus 13 ~~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~ 57 (427)
T PRK13013 13 RDDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELI 57 (427)
T ss_pred HHHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEE
Confidence 45677888888877644322 234799999999999999997654
No 130
>PRK07473 carboxypeptidase; Provisional
Probab=57.93 E-value=2.4e+02 Score=30.93 Aligned_cols=46 Identities=7% Similarity=-0.107 Sum_probs=34.7
Q ss_pred CChhHHHHHHHHhhcCCCCCCCH-hhHHHHHHHHHHHHHCCCceeee
Q 005260 39 SDNVSISHHLHTLTRRPHVAGSE-ANAEAAAYVLSVFTSCSLESHIA 84 (705)
Q Consensus 39 i~~~~i~~~L~~lss~~r~aGt~-g~~~~a~~i~~~~~~~Gl~~~~~ 84 (705)
++.+++.+.|+.|.+.+=.+|.+ +..+.++|+.+.|+++|++++..
T Consensus 8 ~~~~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~ 54 (376)
T PRK07473 8 FDSEAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERI 54 (376)
T ss_pred cCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 45667778888888876666653 33567889999999999997653
No 131
>PRK07906 hypothetical protein; Provisional
Probab=57.48 E-value=1.2e+02 Score=33.83 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.6
Q ss_pred CHhhHHHHHHHHHHHHHCCCceeee
Q 005260 60 SEANAEAAAYVLSVFTSCSLESHIA 84 (705)
Q Consensus 60 t~g~~~~a~~i~~~~~~~Gl~~~~~ 84 (705)
++++.++++||.++|++.|++++..
T Consensus 21 ~~~e~~~~~~l~~~l~~~G~~~~~~ 45 (426)
T PRK07906 21 GKGEREAAEYVAEKLAEVGLEPTYL 45 (426)
T ss_pred CchHHHHHHHHHHHHHhCCCCeEEe
Confidence 3678899999999999999997654
No 132
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=55.92 E-value=22 Score=40.75 Aligned_cols=53 Identities=8% Similarity=0.061 Sum_probs=42.7
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeeE-EEEEEee
Q 005260 38 LSDNVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIAS-YGVSLTY 92 (705)
Q Consensus 38 ~i~~~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~-y~v~~~~ 92 (705)
.++.+.+.+.++.|.+.|+.+|. +.+.++|+.+.+++.|++++.++ ..++...
T Consensus 6 ~~~~~~~~~~l~~Lv~ips~S~~--e~~~~~~l~~~~~~~G~~~~~d~~gnvi~~~ 59 (485)
T PRK15026 6 QLSPQPLWDIFAKICSIPHPSYH--EEQLAEYIVGWAKEKGFHVERDQVGNILIRK 59 (485)
T ss_pred hcCHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHhCCCEEEEEecCeEEEEE
Confidence 46778899999999999988876 45999999999999999987654 3444433
No 133
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=55.80 E-value=24 Score=39.16 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcC--------CCCCCCHhhHHHHHHHHHHHHHCCCceeeeE
Q 005260 43 SISHHLHTLTRR--------PHVAGSEANAEAAAYVLSVFTSCSLESHIAS 85 (705)
Q Consensus 43 ~i~~~L~~lss~--------~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 85 (705)
++++.|+.+++. .|.+-|+++.++++||++.|+++|++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G~~~~~~~ 52 (401)
T TIGR01879 2 RLWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAGLEVRFDE 52 (401)
T ss_pred hHHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 466666666652 2788899999999999999999999987654
No 134
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=53.29 E-value=18 Score=42.61 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhhcC-----------CCCCCCHhhHHHHHHHHHHHHHCCCc-eeeeE-EEEEEeeeC
Q 005260 41 NVSISHHLHTLTRR-----------PHVAGSEANAEAAAYVLSVFTSCSLE-SHIAS-YGVSLTYPV 94 (705)
Q Consensus 41 ~~~i~~~L~~lss~-----------~r~aGt~g~~~~a~~i~~~~~~~Gl~-~~~~~-y~v~~~~P~ 94 (705)
.+++.+.|+.|+.. .|++-|+.+.++++|+.+.|+++||+ ++.+. -.++-.+|.
T Consensus 180 ~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~~gNv~~~~~g 246 (591)
T PRK13799 180 GADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDAVGNVVGRYKA 246 (591)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECCCCCEEEEcCC
Confidence 36777888888874 27888999999999999999999998 98876 345555543
No 135
>PLN02693 IAA-amino acid hydrolase
Probab=51.96 E-value=40 Score=38.07 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=38.2
Q ss_pred hhHHHHhhccCCCCh----hHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCcee
Q 005260 27 SFYHSLYTSTSLSDN----VSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESH 82 (705)
Q Consensus 27 ~~~~~~~~~~~~i~~----~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~ 82 (705)
++++..+++ ..+. +.+.+..++|-+.|=+++. +.++++||.+.|+++|++++
T Consensus 30 ~~~~~~~~~--~~~~~~~~~~~~~~r~~lh~~PE~s~~--E~~ta~~i~~~L~~~G~~~~ 85 (437)
T PLN02693 30 SQIQINLLE--LAKSPEVFDWMVRIRRKIHENPELGYE--EFETSKLIRSELDLIGIKYR 85 (437)
T ss_pred hhhHHHHHH--HhhhhhhHHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHHHCCCeeE
Confidence 455555555 3333 4466777777777877776 78999999999999999864
No 136
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=47.69 E-value=33 Score=38.06 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=37.4
Q ss_pred CChhHHHHHHHHhhcCC-------CCCCCHhhHHHHHHHHHHHHHCCCceeee
Q 005260 39 SDNVSISHHLHTLTRRP-------HVAGSEANAEAAAYVLSVFTSCSLESHIA 84 (705)
Q Consensus 39 i~~~~i~~~L~~lss~~-------r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 84 (705)
++.+++.+.++.|++.+ |.+-++++.++++||.+.|+++|++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~ 59 (412)
T PRK12892 7 IDGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID 59 (412)
T ss_pred ccHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 45567888888888753 46678889999999999999999998654
No 137
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=46.62 E-value=18 Score=39.58 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=27.3
Q ss_pred eeeeeeeEEEEecCCCCCCcEEEEeeccCCcCC---CCCCC
Q 005260 320 VMATIQNVIGIIPGTEEPDRLVILGNHRDAWTF---GAVDP 357 (705)
Q Consensus 320 ~~~~~~NVia~i~G~~~p~~~ViigaH~Ds~~~---GA~Dn 357 (705)
......||||.++|.....+.|++.||+|..++ ...||
T Consensus 36 ~~D~~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~~ 76 (350)
T TIGR03107 36 ETDGLGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKPD 76 (350)
T ss_pred EECCCCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECCC
Confidence 345678999998875112358999999999875 44444
No 138
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=45.33 E-value=4.4e+02 Score=29.53 Aligned_cols=139 Identities=18% Similarity=0.136 Sum_probs=82.7
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceee-----eEEEEEEeeeCcc-ceEEecCCCCCCeEe
Q 005260 38 LSDNVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHI-----ASYGVSLTYPVSR-SLSLTRPPPQPPITF 111 (705)
Q Consensus 38 ~i~~~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~-----~~y~v~~~~P~~~-~l~l~~~~g~~~~~~ 111 (705)
.+...++++.||.-|-.|+.-.+. ..++++.++-+.+|+.++. ..|.+++.++++. .+. .+-+
T Consensus 25 ~~~v~~f~eylRi~Tv~p~~dy~~---a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~--------silL 93 (420)
T KOG2275|consen 25 NISVTRFREYLRIPTVQPNPDYTI---ACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELP--------SILL 93 (420)
T ss_pred chHHHHHHHHhhccccccCCCccH---HHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCcc--------ceee
Confidence 678889999999999888877765 7889999999999997532 2466677777653 111 1111
Q ss_pred eecccccCCCCCCCCCCccccccc------cCCCCcceEEeEEEecCCChh----------chHHHHhcCCcccceEEEE
Q 005260 112 ALRQEIYEGDPYADVADEVLPTFH------GYAKSGTVIGPVVYVNYGRVE----------DYVTLKEMVVNVTGTVVLA 175 (705)
Q Consensus 112 ~l~e~~~~~~~~~~~~~~~~~~~~------a~S~~G~v~g~lVyv~~G~~~----------D~~~L~~~gv~v~GkIvl~ 175 (705)
.- ..|+||.|. +||+.-.-+|. ||+ .|+.+ -...|+..|...+..|.|.
T Consensus 94 ~S-------------H~DVVP~f~e~W~h~Pfsa~~~~~g~-Iya-RGaqD~K~~~va~leAir~L~~~g~kp~Rti~ls 158 (420)
T KOG2275|consen 94 NS-------------HTDVVPVFREKWTHPPFSAFKDEDGN-IYA-RGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLS 158 (420)
T ss_pred ec-------------cccccCCCcccCccCCccccccCCCc-EEe-ccccchHhHHHHHHHHHHHHHhcCCCcCceEEEE
Confidence 11 112333332 34433222332 454 35433 3445556788899999887
Q ss_pred EeCC--C--cchhHHHHH-HHcCCeEEEEEec
Q 005260 176 RYGQ--I--FRGDIVHNA-FEAGAAGALIFTD 202 (705)
Q Consensus 176 ~~g~--~--~~~~k~~~A-~~~GA~gvi~~~d 202 (705)
-.-+ + +.|.|-.+. ++.+..++-++-|
T Consensus 159 fvpDEEi~G~~Gm~~fa~~~~~~~l~~~filD 190 (420)
T KOG2275|consen 159 FVPDEEIGGHIGMKEFAKTEEFKKLNLGFILD 190 (420)
T ss_pred ecCchhccCcchHHHHhhhhhhcccceeEEec
Confidence 5322 1 234443333 5788887777666
No 139
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=45.33 E-value=1.8e+02 Score=32.99 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=30.3
Q ss_pred hHHHHHHHHhhcCCCCCC----------CHhhHHHHHHHHHHHHHCCCceee
Q 005260 42 VSISHHLHTLTRRPHVAG----------SEANAEAAAYVLSVFTSCSLESHI 83 (705)
Q Consensus 42 ~~i~~~L~~lss~~r~aG----------t~g~~~~a~~i~~~~~~~Gl~~~~ 83 (705)
+.+.+.|+.|-+.|=.++ ..+..++++|+.+.|+++|++++.
T Consensus 13 ~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~ 64 (466)
T TIGR01886 13 DALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKN 64 (466)
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEE
Confidence 456666777776653221 256788999999999999999864
No 140
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=44.98 E-value=46 Score=40.26 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=39.3
Q ss_pred HHHhhccCCCChhHHHHHHHHhhcC-CCCCCCHhhH-HHHHHHHHHHHHCC
Q 005260 30 HSLYTSTSLSDNVSISHHLHTLTRR-PHVAGSEANA-EAAAYVLSVFTSCS 78 (705)
Q Consensus 30 ~~~~~~~~~i~~~~i~~~L~~lss~-~r~aGt~g~~-~~a~~i~~~~~~~G 78 (705)
++...+ ..+++|++.+|.++++. +|+.||..++ .+.+|+.++..+..
T Consensus 47 e~~~~~--~f~~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~ 95 (834)
T KOG2194|consen 47 EQTLPS--QFSEARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIR 95 (834)
T ss_pred hhcCch--hhHHHHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHH
Confidence 344445 78999999999999996 8999999887 89999999988643
No 141
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=44.22 E-value=33 Score=39.10 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=39.9
Q ss_pred hhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeeE-EEEEEeee
Q 005260 41 NVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIAS-YGVSLTYP 93 (705)
Q Consensus 41 ~~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~-y~v~~~~P 93 (705)
++++.+.|+.|.+.++.+ ..+.++++|+++.|+++|++++.++ ..++...|
T Consensus 3 ~~~~~~~l~~l~~i~s~s--~~e~~~~~~l~~~l~~~G~~~~~~~~~n~~~~~~ 54 (477)
T TIGR01893 3 PSRVFKYFEEISKIPRPS--KNEKEVSNFIVNWAKKLGLEVKQDEVGNVLIRKP 54 (477)
T ss_pred HHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHHHHHcCCeEEEeCCCeEEEEEc
Confidence 578889999999998765 4578899999999999999987654 33444443
No 142
>PRK06156 hypothetical protein; Provisional
Probab=43.62 E-value=2.9e+02 Score=31.94 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=34.9
Q ss_pred chhHHHHhhccCCCChhHHHHHHHHhhcCCCCCC---C----HhhHHHHHHHHHHHHHCCCceee
Q 005260 26 KSFYHSLYTSTSLSDNVSISHHLHTLTRRPHVAG---S----EANAEAAAYVLSVFTSCSLESHI 83 (705)
Q Consensus 26 ~~~~~~~~~~~~~i~~~~i~~~L~~lss~~r~aG---t----~g~~~~a~~i~~~~~~~Gl~~~~ 83 (705)
.+++...+... .-..+++.+.|+.|-+.+=..+ + +.....++|+.+.|+++|++++.
T Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~ 94 (520)
T PRK06156 31 KPQLDALLYAR-LKYGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRN 94 (520)
T ss_pred ccccchhHHhh-hhhHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEe
Confidence 35555554442 2344566677777776652221 1 22345689999999999998743
No 143
>PRK09133 hypothetical protein; Provisional
Probab=43.21 E-value=52 Score=37.42 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=36.0
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCcee
Q 005260 38 LSDNVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESH 82 (705)
Q Consensus 38 ~i~~~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~ 82 (705)
..+.+++.+.|+.|-+.+-..+..++.++++||.+.|++.|++++
T Consensus 33 ~~~~~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~ 77 (472)
T PRK09133 33 TADQQAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADA 77 (472)
T ss_pred chhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCce
Confidence 456677788888888887666445678999999999999999863
No 144
>TIGR01935 NOT-MenG RraA famliy. This model was initially classified as a "hypothetical equivalog" expressing the tentative hypothesis that all members might have the same function as the E. coli enzyme. Considering the second clade of enterobacterial sequences within this family, that appears to be less tenable. The function of these sequences outside of the narrow RraA equivalog model (TIGR02998) remains obscure. All of these were initially annotated as MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error in the case of the E. coli protein.
Probab=42.83 E-value=90 Score=29.89 Aligned_cols=68 Identities=22% Similarity=0.354 Sum_probs=44.8
Q ss_pred cccccCCCCcceEEeEEEecCCChhchHHHH-hcCCcccceEEEEEeCC-----CcchhHHHHHHHcCCeEEEEEe
Q 005260 132 PTFHGYAKSGTVIGPVVYVNYGRVEDYVTLK-EMVVNVTGTVVLARYGQ-----IFRGDIVHNAFEAGAAGALIFT 201 (705)
Q Consensus 132 ~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~-~~gv~v~GkIvl~~~g~-----~~~~~k~~~A~~~GA~gvi~~~ 201 (705)
+.|..|++...+-|+.+=|-+. +|-..+. .....-.|+|+++..++ ++-+.....|+.+|+.|+|+-.
T Consensus 17 ~~~~~~g~~~~i~G~A~TV~~~--~d~~~~~~ai~~~~~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~VidG 90 (150)
T TIGR01935 17 PMFRNFGGRAAFAGPIVTVKCF--EDNSLVREVLEQPGAGRVLVVDGGGSLRCALLGDNLAVLAEENGWEGVIVNG 90 (150)
T ss_pred hhhhhcCCCCEEEEEEEEEEEE--CCcHHHHHHHhcCCCCeEEEEECCCCCceEeehHHHHHHHHHCCCEEEEEee
Confidence 4466788888888887766544 2211121 12334789999988654 2234567889999999988753
No 145
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=42.73 E-value=38 Score=39.93 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=38.1
Q ss_pred ChhHHHHHHHHhhcCC-----------CCCCCHhhHHHHHHHHHHHHHCCC-ceeeeEE
Q 005260 40 DNVSISHHLHTLTRRP-----------HVAGSEANAEAAAYVLSVFTSCSL-ESHIASY 86 (705)
Q Consensus 40 ~~~~i~~~L~~lss~~-----------r~aGt~g~~~~a~~i~~~~~~~Gl-~~~~~~y 86 (705)
-.+++++.|+.|+..+ |++-|+++.++++|+.+.|+++|+ +++.+..
T Consensus 179 ~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D~~ 237 (591)
T PRK13590 179 LGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHIDAV 237 (591)
T ss_pred HHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeECCC
Confidence 3477888888888732 566699999999999999999999 7776653
No 146
>PRK06915 acetylornithine deacetylase; Validated
Probab=41.13 E-value=39 Score=37.65 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=38.2
Q ss_pred hHHHHhhccCCCC--hhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeee
Q 005260 28 FYHSLYTSTSLSD--NVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIA 84 (705)
Q Consensus 28 ~~~~~~~~~~~i~--~~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~ 84 (705)
+++.++.+ .++ .+++.+.++.|-+.|=.+| .+.++++||++.|+++|++++..
T Consensus 3 ~~~~~~~~--~~~~~~~~~~~~l~~lv~ips~s~--~e~~~~~~l~~~l~~~G~~~~~~ 57 (422)
T PRK06915 3 QLKKQICD--YIESHEEEAVKLLKRLIQEKSVSG--DESGAQAIVIEKLRELGLDLDIW 57 (422)
T ss_pred HHHHHHHH--HHHhhHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhcCCeeEEe
Confidence 34444444 333 3567788888887776655 46899999999999999997543
No 147
>cd01356 AcnX_swivel Putative Aconitase X swivel domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=40.24 E-value=74 Score=29.41 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=26.8
Q ss_pred CCcccceEEEEEeCC--CcchhHHHHHHHcCCe-EEEEEecC
Q 005260 165 VVNVTGTVVLARYGQ--IFRGDIVHNAFEAGAA-GALIFTDR 203 (705)
Q Consensus 165 gv~v~GkIvl~~~g~--~~~~~k~~~A~~~GA~-gvi~~~dp 203 (705)
|.+++|||+++.+++ +.-+.....+..+|-+ +.|++.++
T Consensus 39 G~si~gkILv~p~~kGSt~gs~vl~~l~~~g~aP~AiI~~~~ 80 (123)
T cd01356 39 GESIAGKVLVLPGGKGSTVGSYVLYELARNGTAPAAIVFEEA 80 (123)
T ss_pred CCcccceEEEecCCCCcchHHHHHHHHHHcCCCCeeEeecCc
Confidence 889999999999875 3333455666677753 56666543
No 148
>PRK08652 acetylornithine deacetylase; Provisional
Probab=38.40 E-value=54 Score=35.22 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=33.8
Q ss_pred hHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeeE
Q 005260 42 VSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIAS 85 (705)
Q Consensus 42 ~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 85 (705)
+++.+.++.|-+.|=.+|. +.++++||.+.|+++|++++..+
T Consensus 2 ~~~~~~~~~lv~ips~s~~--e~~~~~~l~~~l~~~G~~v~~~~ 43 (347)
T PRK08652 2 ERAKELLKQLVKIPSPSGQ--EDEIALHIMEFLESLGYDVHIES 43 (347)
T ss_pred hhHHHHHHHHhcCCCCCCc--hHHHHHHHHHHHHHcCCEEEEEe
Confidence 4667788888887766664 67899999999999999976543
No 149
>TIGR02998 RraA_entero regulator of ribonuclease activity A. THIS PROTEIN IS _NOT_ MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error .
Probab=35.82 E-value=1.5e+02 Score=28.84 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=45.4
Q ss_pred cccccCCCCcceEEeEEEecCCChhchHHHH-hcCCcccceEEEEEeCC-----CcchhHHHHHHHcCCeEEEEEe
Q 005260 132 PTFHGYAKSGTVIGPVVYVNYGRVEDYVTLK-EMVVNVTGTVVLARYGQ-----IFRGDIVHNAFEAGAAGALIFT 201 (705)
Q Consensus 132 ~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~-~~gv~v~GkIvl~~~g~-----~~~~~k~~~A~~~GA~gvi~~~ 201 (705)
+.|..|++.-.+-|+.+=|.... |-..+. .....-.|+|+++..++ ++-+.-...|..+|++|+|+.-
T Consensus 21 ~~~~~~g~~~~~~G~A~TV~~~~--d~~~~~~aid~~~pGdVlVid~~g~~~~A~~G~~la~~a~~~G~aGvVidG 94 (161)
T TIGR02998 21 PIFSNFGGRSSFGGKVVTVKCFE--HNGLINELLEQNGTGRVLVIDGGGSTRRALIDAELAQLAANNGWEGIVVYG 94 (161)
T ss_pred ccccccCCCCEEEEEEEEEEeeC--CcHHHHHHHhccCCCeEEEEECCCCCceEeeCHHHHHHHHHCCCeEEEEee
Confidence 44778888878888888775543 211111 22334679999988654 2234566789999999999864
No 150
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=33.46 E-value=78 Score=34.98 Aligned_cols=46 Identities=9% Similarity=0.047 Sum_probs=35.6
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceee
Q 005260 38 LSDNVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHI 83 (705)
Q Consensus 38 ~i~~~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~ 83 (705)
....+++.+.|+.|-+.|=..+..+..++++||++.|+++|++++.
T Consensus 5 ~~~~~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~ 50 (400)
T TIGR01880 5 KWEEDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKT 50 (400)
T ss_pred ccchHHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeE
Confidence 4556677788888887765555445678999999999999998754
No 151
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=32.86 E-value=76 Score=34.39 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=36.1
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeeE
Q 005260 39 SDNVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIAS 85 (705)
Q Consensus 39 i~~~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 85 (705)
|..+++.+.|+.|.+.|-.+|. +.++++|+.+.|++.|++++.++
T Consensus 3 ~~~~~~~~~l~~Lv~i~s~s~~--e~~~~~~l~~~l~~~G~~~~~~~ 47 (348)
T PRK04443 3 ISALEARELLKGLVEIPSPSGE--EAAAAEFLVEFMESHGREAWVDE 47 (348)
T ss_pred cchHHHHHHHHHHHcCCCCCCC--hHHHHHHHHHHHHHcCCEEEEcC
Confidence 4456788888999888766654 77999999999999999876543
No 152
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=32.34 E-value=1.6e+02 Score=28.49 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=40.7
Q ss_pred cccCCCCcceEEeEEEecCCChhchHHHHhcCCcccceEEEEEeCC-----CcchhHHHHHHHcCCeEEEEE
Q 005260 134 FHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQ-----IFRGDIVHNAFEAGAAGALIF 200 (705)
Q Consensus 134 ~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvl~~~g~-----~~~~~k~~~A~~~GA~gvi~~ 200 (705)
+.++++...+-|+.+=|-+. .+.....+.....-.|+|+++..++ ++-+.....|+.+|++|+|+-
T Consensus 23 i~~~~~~~~~~G~A~TV~~~-~d~~~~~~~i~~~~~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~Vid 93 (159)
T PRK09372 23 FSSFGGRSSFGGPITTVKCF-EDNGLVKELLEEPGEGRVLVVDGGGSLRRALVGDNLAELAVDNGWEGIVVY 93 (159)
T ss_pred ccccCCCCEEEEEEEEEEEe-CCcHHHHHHHhcCCCCeEEEEECCCCcCcEeehHHHHHHHHHcCCeEEEec
Confidence 44556666777777655443 1111111122345789999988654 233456788999999998875
No 153
>PRK05111 acetylornithine deacetylase; Provisional
Probab=31.22 E-value=83 Score=34.44 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=35.6
Q ss_pred ChhHHHHHHHHhhcCCCCCCCH-----hhHHHHHHHHHHHHHCCCceeeeE
Q 005260 40 DNVSISHHLHTLTRRPHVAGSE-----ANAEAAAYVLSVFTSCSLESHIAS 85 (705)
Q Consensus 40 ~~~~i~~~L~~lss~~r~aGt~-----g~~~~a~~i~~~~~~~Gl~~~~~~ 85 (705)
..+.+.+.++.|-+.|-.+|.+ ++.++++||++.|+++|++++..+
T Consensus 3 ~~~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 53 (383)
T PRK05111 3 KLPSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQP 53 (383)
T ss_pred CchHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEe
Confidence 3457888888888887666653 246899999999999999876543
No 154
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=29.43 E-value=74 Score=34.53 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeeE
Q 005260 43 SISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIAS 85 (705)
Q Consensus 43 ~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 85 (705)
++.+.++.|.+.|=.+| .+.++++||.+.|+++|++++..+
T Consensus 1 ~~~~~~~~l~~i~s~s~--~e~~~~~~l~~~l~~~g~~~~~~~ 41 (361)
T TIGR01883 1 RLKKYFLELIQIDSESG--KEKAILTYLKKQITKLGIPVSLDE 41 (361)
T ss_pred ChHHHHHHHeecCCCCC--cHHHHHHHHHHHHHHcCCEEEEec
Confidence 46778888888776655 477999999999999999876543
No 155
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=28.11 E-value=1e+02 Score=33.73 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=33.6
Q ss_pred hHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeeE
Q 005260 42 VSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIAS 85 (705)
Q Consensus 42 ~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 85 (705)
+++.+.|+.|-+.|=.+|. +.++++||.+.|+++|++++..+
T Consensus 2 ~~~~~~l~~Lv~i~s~s~~--e~~~~~~l~~~l~~~G~~~~~~~ 43 (377)
T PRK08588 2 EEKIQILADIVKINSVNDN--EIEVANYLQDLFAKHGIESKIVK 43 (377)
T ss_pred hHHHHHHHHHhcCCCCCCc--HHHHHHHHHHHHHHCCCceEEEe
Confidence 4566778888887766665 67899999999999999976543
No 156
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=27.90 E-value=1e+02 Score=33.87 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhcCCCCCCC---HhhHHHHHHHHHHHHHCCCc-eeee
Q 005260 42 VSISHHLHTLTRRPHVAGS---EANAEAAAYVLSVFTSCSLE-SHIA 84 (705)
Q Consensus 42 ~~i~~~L~~lss~~r~aGt---~g~~~~a~~i~~~~~~~Gl~-~~~~ 84 (705)
+++.+.|+.|.+.+=.+++ .++.++++||.+.|+++|++ ++..
T Consensus 5 ~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~ 51 (400)
T PRK13983 5 DEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERY 51 (400)
T ss_pred HHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEE
Confidence 4577778888876644443 35789999999999999998 7543
No 157
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=27.01 E-value=1e+02 Score=33.65 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=36.7
Q ss_pred hhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeeEEE
Q 005260 41 NVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIASYG 87 (705)
Q Consensus 41 ~~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~y~ 87 (705)
.+++.+.|+.|.+.+=.+|. +.+.++|+.+.|+++|++++.+.+.
T Consensus 2 ~~~~~~lLk~Lv~~~s~SG~--E~~V~~~l~~~l~~~g~ev~~D~~G 46 (343)
T TIGR03106 2 TDYLTETLLALLAIPSPTGF--TDAVVRYVAERLEDLGIEYELTRRG 46 (343)
T ss_pred hHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHHcCCeEEECCCe
Confidence 35677889999998877776 5699999999999999998776543
No 158
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=26.30 E-value=1.3e+02 Score=33.44 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=30.0
Q ss_pred CCCCCHhhHHHHHHHHHHHHHCCCc-eeeeE--EEEEEeeeCc
Q 005260 56 HVAGSEANAEAAAYVLSVFTSCSLE-SHIAS--YGVSLTYPVS 95 (705)
Q Consensus 56 r~aGt~g~~~~a~~i~~~~~~~Gl~-~~~~~--y~v~~~~P~~ 95 (705)
....++++++.|+|++++|+++|++ ++.++ -.|+...|..
T Consensus 25 ~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~~~gnv~~~~~~~ 67 (410)
T TIGR01882 25 TCPSTPGQLTFGNMLVDDLKSLGLQDAHYDEKNGYVIATIPSN 67 (410)
T ss_pred CCCCCHhHHHHHHHHHHHHHHcCCceEEEcCCceEEEEEecCC
Confidence 4556778889999999999999997 87764 3354444553
No 159
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=26.05 E-value=2.6e+02 Score=32.73 Aligned_cols=89 Identities=24% Similarity=0.428 Sum_probs=61.1
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHh-------hhccccccccccH
Q 005260 541 ADEEFLPFNYLSYAFELQKSTKDLENEVSGKGISLIPLFKSIEELAKAAAKIDNEKKELQ-------KAKGWASTWKKDQ 613 (705)
Q Consensus 541 a~~~~lP~d~~~y~~~l~~~~~~l~~~~~~~~~~~~~l~~a~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~ 613 (705)
.+=|-+|=++.++.......++.+.+.+....+|...+.+.+.........+......+- ....+..++....
T Consensus 433 ~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRYR~~~ 512 (560)
T PF06160_consen 433 SNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRYRSDN 512 (560)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 456788888999999999999999999988889999888888887777777777555431 1111222232222
Q ss_pred HHHHHHHHHHHHHHHhccC
Q 005260 614 YKVRELNDRLMMAERAFTD 632 (705)
Q Consensus 614 ~~~~~~N~~l~~~er~fl~ 632 (705)
. .++..|...|+.|-+
T Consensus 513 ~---~v~~al~~Ae~~F~~ 528 (560)
T PF06160_consen 513 P---EVDEALTEAEDLFRN 528 (560)
T ss_pred H---HHHHHHHHHHHHHHh
Confidence 2 456666666666644
No 160
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=25.86 E-value=1.1e+02 Score=33.57 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=32.7
Q ss_pred hhHHHHHHHHhhcCCCCCCC-HhhHHHHHHHHHHHHHCCCceeeeE
Q 005260 41 NVSISHHLHTLTRRPHVAGS-EANAEAAAYVLSVFTSCSLESHIAS 85 (705)
Q Consensus 41 ~~~i~~~L~~lss~~r~aGt-~g~~~~a~~i~~~~~~~Gl~~~~~~ 85 (705)
.+++.+.|+.|.+.+=.++. .++.++++||+++|+++|++++..+
T Consensus 5 ~~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~ 50 (394)
T PRK08651 5 MFDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIE 50 (394)
T ss_pred HHHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35566777777776644322 3457899999999999999876554
No 161
>PRK13381 peptidase T; Provisional
Probab=24.81 E-value=2.2e+02 Score=31.47 Aligned_cols=52 Identities=25% Similarity=0.347 Sum_probs=35.2
Q ss_pred CCCchHHHHhcCCceEEEeeeCCCCCCCCCCccchHHHHhhCCcchHHHHHHHHHHHHHHHHhC
Q 005260 478 GGSDYAAFIQHIGVPVADMSFGTGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLA 541 (705)
Q Consensus 478 ~~SD~~~F~~~~GIPs~~l~~~~~~p~yHt~~Dt~~~l~~~~dp~~~~~~~~a~~~~~l~~~La 541 (705)
+++|..-|.+ .|||++.+..+.. .-|++..-.+ .......++++..++.++|
T Consensus 352 g~tDa~~~~~-~giP~v~~GpG~~--~aH~~dE~v~---------i~~l~~~~~v~~~~~~~~~ 403 (404)
T PRK13381 352 GGTDGAALSA-KGLPTPNLFTGAH--NFHSRFEFLP---------VSSFVKSYEVTITICLLAA 403 (404)
T ss_pred ccchHHHHhc-CCCCeEEECcccc--CCcCcceeEE---------HHHHHHHHHHHHHHHHHhc
Confidence 6789876665 6999999865432 3577654332 2335567788888888876
No 162
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=24.78 E-value=88 Score=34.06 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=31.3
Q ss_pred HHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceee
Q 005260 45 SHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHI 83 (705)
Q Consensus 45 ~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~ 83 (705)
.+.++.|.+.|..+|. +.++++||.+.|+++|++++.
T Consensus 2 ~~~~~~L~~ips~s~~--E~~~a~~l~~~l~~~g~~~~~ 38 (363)
T TIGR01891 2 TDIRRHLHEHPELSFE--EFKTSSLIAEALESLGIEVRR 38 (363)
T ss_pred hHHHHHHhcCCCCCCc--hHHHHHHHHHHHHHcCCceEe
Confidence 3567888888988875 689999999999999999754
No 163
>PRK05469 peptidase T; Provisional
Probab=24.37 E-value=1.3e+02 Score=33.42 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=35.6
Q ss_pred CCCchHHHHhcCCceEEEeeeCCCCCCCCCCccchHHHHhhCCcchHHHHHHHHHHHHHHHHhCCC
Q 005260 478 GGSDYAAFIQHIGVPVADMSFGTGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLADE 543 (705)
Q Consensus 478 ~~SD~~~F~~~~GIPs~~l~~~~~~p~yHt~~Dt~~~l~~~~dp~~~~~~~~a~~~~~l~~~La~~ 543 (705)
+++|...|.. .|||++.+..+. ...|++....+ .+.....++++..++..+|+.
T Consensus 354 ggtD~~~~~~-~giP~v~~gpG~--~~~H~~~E~v~---------i~~l~~~~~~~~~~~~~~~~~ 407 (408)
T PRK05469 354 GGTDGSQLSF-MGLPCPNIFTGG--HNFHGKFEFVS---------LESMEKAVEVIVEIAELTAER 407 (408)
T ss_pred CcccHHHHhh-CCCceEEECcCc--ccCcCcceeeE---------HHHHHHHHHHHHHHHHHHhcC
Confidence 6789987765 699998876432 23688754432 123445677888888777753
No 164
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=24.16 E-value=4.6e+02 Score=29.48 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=36.6
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCcee
Q 005260 39 SDNVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESH 82 (705)
Q Consensus 39 i~~~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~ 82 (705)
+..+++.+....|++.||.++- +.+.+.|+.++++..|+.++
T Consensus 2 ~~~~~l~~~F~~~~kI~~~S~~--e~~~~p~~~~~~k~~~~~v~ 43 (414)
T COG2195 2 LKMERLLDRFLELVKIPTQSKH--EKAVAPSTVGQAKLLGLLVE 43 (414)
T ss_pred cchHHHHHHHHHHeeCCCCCCC--ccccccccHHHHHHcCchhh
Confidence 4667888888889999998886 78899999999999999875
No 165
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=24.11 E-value=1e+02 Score=33.62 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=28.2
Q ss_pred HHHHhhcCCCCC-CCHhhHHHHHHHHHHHHHCCCceeee
Q 005260 47 HLHTLTRRPHVA-GSEANAEAAAYVLSVFTSCSLESHIA 84 (705)
Q Consensus 47 ~L~~lss~~r~a-Gt~g~~~~a~~i~~~~~~~Gl~~~~~ 84 (705)
.|+.|.+.+-.+ .+.++.++++|+++.|+++|++++..
T Consensus 3 ~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~ 41 (375)
T TIGR01910 3 LLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVI 41 (375)
T ss_pred hHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEE
Confidence 455666665422 34568899999999999999997654
No 166
>PRK12487 ribonuclease activity regulator protein RraA; Reviewed
Probab=23.90 E-value=2.7e+02 Score=27.10 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=41.7
Q ss_pred ccccCCCCcceEEeEEEecCCChhchHHHH-hcCCcccceEEEEEeCC-----CcchhHHHHHHHcCCeEEEEEe
Q 005260 133 TFHGYAKSGTVIGPVVYVNYGRVEDYVTLK-EMVVNVTGTVVLARYGQ-----IFRGDIVHNAFEAGAAGALIFT 201 (705)
Q Consensus 133 ~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~-~~gv~v~GkIvl~~~g~-----~~~~~k~~~A~~~GA~gvi~~~ 201 (705)
.+.++.+...+-|+.+=|-+. +|-..+. .....-.|.|+++..++ ++-+.....|+.+|++|+|+.-
T Consensus 22 ~i~~~~~~~~~~G~A~TV~~~--~d~~~~~~al~~~~~GdVlVid~~g~~~~a~~G~~~a~~a~~~G~aG~VidG 94 (163)
T PRK12487 22 PFKNFGGKRIFWGEIVTVRCF--EDNSKVKEVLAQDGKGKVLVVDGGGSCRRALLGDQIAQSALDNGWEGIVING 94 (163)
T ss_pred hheecCCCCEEEEEEEEEEee--CCcHHHHHHHhcCCCCeEEEEECCCCCCcEeehHHHHHHHHHCCCeEEEEee
Confidence 345566666777777666542 2211121 12234689999988654 2334567889999999998764
No 167
>PRK07522 acetylornithine deacetylase; Provisional
Probab=22.93 E-value=1.3e+02 Score=32.81 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=32.1
Q ss_pred hHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceee
Q 005260 42 VSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHI 83 (705)
Q Consensus 42 ~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~ 83 (705)
..+.+.|+.|.+.|-.+|.+ ..++++||.++|+++|++++.
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~-~~~~~~~l~~~l~~~G~~~~~ 44 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDS-NLALIEWVRDYLAAHGVESEL 44 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCc-cHHHHHHHHHHHHHcCCeEEE
Confidence 44677788888887766642 258999999999999998754
No 168
>PRK06201 hypothetical protein; Validated
Probab=22.36 E-value=2.8e+02 Score=28.31 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=36.9
Q ss_pred CCCCcceEEeEEEecCCChhchHHHHhcCCcccceEEEEEeCC-----CcchhHHHHHHHcCCeEEEEEe
Q 005260 137 YAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQ-----IFRGDIVHNAFEAGAAGALIFT 201 (705)
Q Consensus 137 ~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvl~~~g~-----~~~~~k~~~A~~~GA~gvi~~~ 201 (705)
+.+...+-|+.+=+-+.-.+.....+.....-.|.|+++..++ ++-+.....|+.+|++|+|+..
T Consensus 47 ~~~~~~~~G~A~Tv~~~~~d~~~~~~ai~~~~pG~VlVid~~g~~~~a~~G~~~a~~a~~~G~~G~VidG 116 (221)
T PRK06201 47 MHRGGRLAGTALTVRTRPGDNLMIHRALDLARPGDVIVVDGGGDLTNALVGEIMLAIAARRGVAGVVIDG 116 (221)
T ss_pred cCCCCEEEEEEEEEEeeCCCcHHHHHHHhccCCCcEEEEECCCCCCccchhHHHHHHHHHCCCeEEEEee
Confidence 3444456666655543322221111111223579999987654 2334567889999999998763
No 169
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=22.26 E-value=1.5e+02 Score=32.73 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=27.2
Q ss_pred ccceEEEEEeCCCcchhHHHHHHHcCCeEEEEE
Q 005260 168 VTGTVVLARYGQIFRGDIVHNAFEAGAAGALIF 200 (705)
Q Consensus 168 v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~ 200 (705)
+.++|-|+-.|++.++..+..|...||.+|.+=
T Consensus 280 v~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~ig 312 (367)
T TIGR02708 280 VDKRVPIVFDSGVRRGQHVFKALASGADLVALG 312 (367)
T ss_pred hCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEc
Confidence 456787777788888988888888999999864
No 170
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=22.20 E-value=1.4e+02 Score=32.29 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=31.7
Q ss_pred hHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeeE
Q 005260 42 VSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIAS 85 (705)
Q Consensus 42 ~~i~~~L~~lss~~r~aGt~g~~~~a~~i~~~~~~~Gl~~~~~~ 85 (705)
+++.+.|+.|-+.+=. |.++.++++||++.|++.|++++..+
T Consensus 10 ~~~~~~l~~lv~i~s~--s~~e~~~~~~l~~~l~~~g~~~~~~~ 51 (346)
T PRK00466 10 QKAKELLLDLLSIYTP--SGNETNATKFFEKISNELNLKLEILP 51 (346)
T ss_pred HHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4666777777776533 44567999999999999999876544
No 171
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=22.05 E-value=1.4e+02 Score=25.46 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHhhhccCCCCc---hh---HHHHhhccCCCChhHHHHHHHHhhcCCCCCCCHhhHH
Q 005260 6 ITCFLAIATSFSFLLSSPQPK---SF---YHSLYTSTSLSDNVSISHHLHTLTRRPHVAGSEANAE 65 (705)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~i~~~~i~~~L~~lss~~r~aGt~g~~~ 65 (705)
|.|+|++++===+++.++.+. ++ -...|-+ .++.++++..-+.+++-|---|.+...+
T Consensus 15 IVclliya~YRR~~i~~p~~~r~~D~L~~~ds~F~D--~lTpDQVrAlHRlvTsSpe~d~~~a~aa 78 (92)
T PHA02681 15 IVCYIVIMMYRRSCVSAPAVPRNKDLLPPGASSFED--KMTDDQVRAFHALVTSSPEDDPAPAPAA 78 (92)
T ss_pred HHHHHHHHHHHhccCCCCCCCcccccCCCCCchhhc--cCCHHHHHHHHHHHhCCCCCCCCcCccc
Confidence 445544444333444444421 22 2345777 8999999999888888775555443333
No 172
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.21 E-value=3.9e+02 Score=31.32 Aligned_cols=90 Identities=26% Similarity=0.408 Sum_probs=58.7
Q ss_pred HHhCCCCCCCCChhhHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHH-------hhhcccccccc
Q 005260 538 LQLADEEFLPFNYLSYAFELQKSTKDLENEVSGKGISLIPLFKSIEELAKAAAKIDNEKKEL-------QKAKGWASTWK 610 (705)
Q Consensus 538 ~~La~~~~lP~d~~~y~~~l~~~~~~l~~~~~~~~~~~~~l~~a~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ 610 (705)
++..+-|-+|=++..+...+...++.|.+.+....+++..+...+.........+.+....+ +....+..+|.
T Consensus 434 l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr 513 (569)
T PRK04778 434 LEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYR 513 (569)
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45777899999999999999999999999888777887776644444444444444433222 11111112221
Q ss_pred ccHHHHHHHHHHHHHHHHhc
Q 005260 611 KDQYKVRELNDRLMMAERAF 630 (705)
Q Consensus 611 ~~~~~~~~~N~~l~~~er~f 630 (705)
..-..+|..+...|+.|
T Consensus 514 ---~~~~~V~~~f~~Ae~lF 530 (569)
T PRK04778 514 ---SDNEEVAEALNEAERLF 530 (569)
T ss_pred ---CCCHHHHHHHHHHHHHH
Confidence 12346888888888888
No 173
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=21.19 E-value=1.5e+02 Score=31.85 Aligned_cols=43 Identities=33% Similarity=0.374 Sum_probs=33.8
Q ss_pred hHHHHhcCCcccceEEEEEeCCCcchhHHHHHHHcCCeEEEEE
Q 005260 158 YVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIF 200 (705)
Q Consensus 158 ~~~L~~~gv~v~GkIvl~~~g~~~~~~k~~~A~~~GA~gvi~~ 200 (705)
.+.|.+-=..|+|||.+.-.|++.+|.-+..|...||.||.+=
T Consensus 265 I~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiG 307 (363)
T KOG0538|consen 265 IEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIG 307 (363)
T ss_pred HHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEec
Confidence 4444432335899999988899999999999999999999753
No 174
>PRK03955 hypothetical protein; Reviewed
Probab=20.76 E-value=2.9e+02 Score=25.83 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=24.6
Q ss_pred CCcccceEEEEEeCC--CcchhHHHHHHHcCC-eEEEEEec
Q 005260 165 VVNVTGTVVLARYGQ--IFRGDIVHNAFEAGA-AGALIFTD 202 (705)
Q Consensus 165 gv~v~GkIvl~~~g~--~~~~~k~~~A~~~GA-~gvi~~~d 202 (705)
|.+++|||.++..++ +.-+.....+.++|. -..|++.+
T Consensus 46 G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~~ 86 (131)
T PRK03955 46 GESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINLE 86 (131)
T ss_pred CCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEec
Confidence 889999999999765 333344555555664 34555554
No 175
>TIGR02798 ligK_PcmE 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase. Members of this protein family 4-carboxy-4-hydroxy-2-oxoadipate aldolase, also called 4-oxalocitramalate aldolase. This enzyme of the protocatechuate 4,5-cleavage pathway converts its substrate to pyruvate plus oxaloacetate. Protocatechuate is an intermediate in many pathways for degrading aromatic compounds, including lignin, fluorene, etc. Hara, et al. showed the LigK gene was not only a 4-carboxy-4-hydroxy-2-oxoadipate aldolase but also the enzyme of the following step, oxaloacetate decarboxylase.
Probab=20.28 E-value=3.3e+02 Score=27.81 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=38.7
Q ss_pred CCCCcceEEeEEEecCCChhchHHHHhcCCcccceEEEEEeCC-----CcchhHHHHHHHcCCeEEEEEe
Q 005260 137 YAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQ-----IFRGDIVHNAFEAGAAGALIFT 201 (705)
Q Consensus 137 ~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvl~~~g~-----~~~~~k~~~A~~~GA~gvi~~~ 201 (705)
..+...+-|+.+=|-+.-.++....+.....-.|.|+++..++ ++-+.....|+.+|++|+|+..
T Consensus 43 ~~~~~ki~G~A~TV~~~~~d~~~~~~ai~~~~pGdVlVid~~g~~~~a~~G~~~a~~a~~~G~~GiVidG 112 (222)
T TIGR02798 43 IYTGARVCGTAVTVLLQPGDNWMMHVAAEQIQEGDVVVAACTAECEDGYFGDLLATSFQARGCRGLIIDA 112 (222)
T ss_pred cCCCCEEEEEEEEEEeecCCchHHHHHHHhCCCCeEEEEECCCCcceEeehHHHHHHHHHCCCeEEEEec
Confidence 3444456677665543322222111112335789999998654 2334567889999999998864
Done!