Query 005261
Match_columns 705
No_of_seqs 138 out of 741
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 20:40:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02255 H(+) -translocating i 100.0 3E-229 6E-234 1901.7 69.1 699 3-704 1-699 (765)
2 TIGR01104 V_PPase vacuolar-typ 100.0 9E-225 2E-229 1855.1 63.1 633 12-704 4-636 (697)
3 PLN02277 H(+) -translocating i 100.0 2E-220 4E-225 1829.9 61.2 636 18-704 2-680 (730)
4 PF03030 H_PPase: Inorganic H+ 100.0 1E-219 3E-224 1826.3 49.7 623 19-704 1-636 (682)
5 PRK00733 hppA membrane-bound p 100.0 2E-215 5E-220 1778.4 59.2 599 63-704 2-611 (666)
6 COG3808 OVP1 Inorganic pyropho 100.0 2E-212 4E-217 1694.0 54.2 626 11-704 5-648 (703)
7 COG3104 PTR2 Dipeptide/tripept 85.6 25 0.00054 41.1 15.7 77 249-353 132-209 (498)
8 PF03030 H_PPase: Inorganic H+ 72.7 26 0.00057 42.3 11.0 69 574-651 595-667 (682)
9 PF02355 SecD_SecF: Protein ex 53.3 68 0.0015 32.6 8.5 74 607-688 103-179 (189)
10 PF06800 Sugar_transport: Suga 50.3 2.2E+02 0.0048 30.9 12.1 101 334-460 105-207 (269)
11 PRK11677 hypothetical protein; 49.9 20 0.00043 35.0 3.8 33 409-441 3-35 (134)
12 COG3808 OVP1 Inorganic pyropho 47.6 2.4E+02 0.0053 33.6 12.4 103 364-507 51-153 (703)
13 PF00344 SecY: SecY translocas 42.5 74 0.0016 35.0 7.3 115 547-665 202-324 (346)
14 TIGR00833 actII Transport prot 41.7 2.1E+02 0.0045 35.7 11.7 93 461-564 198-296 (910)
15 COG1269 NtpI Archaeal/vacuolar 40.0 7.6E+02 0.017 30.0 15.6 101 327-429 365-483 (660)
16 TIGR00966 3a0501s07 protein-ex 33.9 1.3E+02 0.0029 31.5 7.3 70 608-687 171-245 (246)
17 PTZ00219 Sec61 alpha subunit; 32.0 1.1E+02 0.0025 35.4 6.9 70 589-661 372-441 (474)
18 PF12670 DUF3792: Protein of u 31.1 4.5E+02 0.0097 24.6 11.4 101 302-420 14-114 (116)
19 KOG0860 Synaptobrevin/VAMP-lik 30.0 1.6E+02 0.0035 28.4 6.3 24 75-98 59-88 (116)
20 PF06738 DUF1212: Protein of u 29.8 1.2E+02 0.0026 30.0 5.9 24 609-637 84-107 (193)
21 COG5336 Uncharacterized protei 28.3 84 0.0018 30.1 4.1 51 403-464 43-93 (116)
22 PF08006 DUF1700: Protein of u 28.3 6E+02 0.013 25.2 12.4 19 197-215 142-160 (181)
23 PF12331 DUF3636: Protein of u 28.1 44 0.00095 33.3 2.4 22 491-512 49-70 (149)
24 PRK01610 putative voltage-gate 28.0 4E+02 0.0086 30.3 10.2 19 572-590 319-337 (418)
25 TIGR00245 conserved hypothetic 27.9 67 0.0015 34.2 3.9 70 574-654 114-186 (248)
26 COG4214 XylH ABC-type xylose t 27.2 3.5E+02 0.0075 30.9 9.2 115 76-197 218-338 (394)
27 PRK08382 putative monovalent c 26.9 2.1E+02 0.0046 29.8 7.2 107 519-635 1-144 (201)
28 PF15176 LRR19-TM: Leucine-ric 26.9 64 0.0014 30.3 3.1 36 405-440 16-58 (102)
29 PF03649 UPF0014: Uncharacteri 26.7 81 0.0018 33.6 4.3 70 574-654 120-192 (250)
30 COG2443 Sss1 Preprotein transl 25.2 72 0.0016 27.8 2.9 35 605-639 4-38 (65)
31 PF12263 DUF3611: Protein of u 24.6 4.4E+02 0.0095 27.1 8.8 22 482-503 111-132 (183)
32 PRK00733 hppA membrane-bound p 24.4 3.9E+02 0.0085 32.7 9.6 141 144-300 484-645 (666)
33 PF04911 ATP-synt_J: ATP synth 23.8 32 0.0007 28.9 0.5 7 273-279 39-45 (54)
34 TIGR01104 V_PPase vacuolar-typ 23.7 4.1E+02 0.0088 32.7 9.5 142 146-300 511-675 (697)
35 PRK13021 secF preprotein trans 23.2 2.3E+02 0.005 31.0 7.0 74 608-689 199-275 (297)
36 PF03672 UPF0154: Uncharacteri 23.1 1.3E+02 0.0029 26.1 4.1 32 579-624 3-34 (64)
37 PF00110 wnt: wnt family; Int 22.9 79 0.0017 34.6 3.4 23 597-619 22-44 (310)
38 COG3105 Uncharacterized protei 22.6 1.1E+02 0.0023 30.2 3.8 30 407-436 6-35 (138)
39 PF00957 Synaptobrevin: Synapt 22.6 2.7E+02 0.0058 24.4 6.1 40 75-114 40-83 (89)
40 PF03023 MVIN: MviN-like prote 21.6 1.2E+03 0.026 26.4 12.6 26 407-432 323-348 (451)
41 PRK13022 secF preprotein trans 21.5 5.9E+02 0.013 27.6 9.6 72 608-689 200-276 (289)
42 PRK15374 pathogenicity island 21.1 6.9E+02 0.015 30.1 10.4 90 505-616 369-460 (593)
43 PF11368 DUF3169: Protein of u 20.9 9.8E+02 0.021 25.1 14.8 26 405-430 8-33 (248)
44 COG0341 SecF Preprotein transl 20.8 3E+02 0.0064 30.5 7.2 73 610-690 209-284 (305)
45 PRK06696 uridine kinase; Valid 20.6 38 0.00082 34.4 0.4 17 260-282 203-219 (223)
46 PF06295 DUF1043: Protein of u 20.3 1.1E+02 0.0024 29.3 3.4 25 412-436 2-26 (128)
No 1
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=2.6e-229 Score=1901.71 Aligned_cols=699 Identities=91% Similarity=1.351 Sum_probs=636.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCchhhhhhcCCCCccccHHHHHHH
Q 005261 3 AAILPDLGAEILIPVCAVIGIAFALVQWVLVSNIKLSPARDASGNSPGAGGGKNGCTDYLIEEEEGLNDHNVVIKCAEIQ 82 (705)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~m~~Is 82 (705)
+.+++|.++..+++++++++++||+++++||+|.+..+++.+.+ +..+..++++|...++++|++.+++++|||||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~d~~~e~~eG~~~~~~~~~m~~Ia 77 (765)
T PLN02255 1 MAILSELATEVLIPVAALIGIAFALLQWYLVSRVKVSPDSGASS---NGGGGGGGYGDYLIEEEEGLNDHNVVAKCAEIQ 77 (765)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccc---ccccccccccccccccccCccccccCHHHHHHH
Confidence 46899999999999999999999999999999887655432222 222234666666666667777788899999999
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccccccccCCcccCCCccCCcchhhhhhHHHHHHHHHHHHHHHhhh
Q 005261 83 SAISEGATSFLFTEYQYVGVFMVAFAILIFLFLGSVEGFSTKSQACTYDPFKMCKPALATAAFSTVSFLLGGITSVVSGF 162 (705)
Q Consensus 83 ~~I~eGA~afL~~qyk~i~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~Fl~Ga~~S~laG~ 162 (705)
++|||||++||+||||++++|++++++++++++.+.++.+.+++++.++.+..|.+.....++++++|++|++||.++||
T Consensus 78 ~~I~eGA~afL~rqyk~i~~~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fl~Ga~~S~~aG~ 157 (765)
T PLN02255 78 NAISEGATSFLFTEYKYVGIFMVIFAAVIFVFLGSVEGFSTKSQPCTYDKGKLCKPALANAAFSTVAFLLGALTSVVSGF 157 (765)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999766654333333444455555566777777778899999999999999999
Q ss_pred hhhhhhhhhhHhhHHHHhcChhHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhHhHhhhcchhhHHH
Q 005261 163 LGMKIATFANARTTLEARKGVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWSGLFEAITGYGLGGSSMA 242 (705)
Q Consensus 163 iGM~vAt~aNvRta~aA~~~~~~al~vAfrgGsVmG~~v~glgLl~l~~~~~~~~~~~~~~~~~~~~~l~gf~~GaS~iA 242 (705)
+|||+|||+|+|||+|||+++++||++|||+|+||||+|++++|++++++|++|..+++++..+++++++||+||+|++|
T Consensus 158 iGM~vat~ANvRtA~AA~~gl~~al~vAfr~GaVmGl~vvgl~Llgl~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iA 237 (765)
T PLN02255 158 LGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKLYYGDDWEGLYEAITGYGLGGSSMA 237 (765)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhHHhhhcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999998864454444446789999999999999
Q ss_pred HHHHhhcccchhhhhhccccccccccCCCCCCCCCccchhcccccccccccccchhhhhhhHHHHHHHHHHHHHhhcccc
Q 005261 243 LFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGIN 322 (705)
Q Consensus 243 LFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamilg~~~~~~~~ 322 (705)
||+|+||||||||||||||||||||+|||||||||||||||||||||||||||+|||||||+++++++|+|+....++.+
T Consensus 238 lFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~s~vaamilg~~~~~~~~ 317 (765)
T PLN02255 238 LFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGIN 317 (765)
T ss_pred HHHHHcCceeeeccccchhhhhhhhcCCCCCCCCCcchHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999963222333
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcccc
Q 005261 323 HELTAMLYPLLISSAGIIVCLITTLFATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKV 402 (705)
Q Consensus 323 ~~~~~v~~Pl~i~a~gi~~Siig~~~~~~~~~~~~~~~~~~aL~~~~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~~~ 402 (705)
..+..+.|||+++++||++|++|++++|.+++.+++++++++||+++|+|++++++.++++++|++|.++..+..++...
T Consensus 318 ~~~~~v~~PLli~~~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~ 397 (765)
T PLN02255 318 HDFTAMCYPLLISSVGIIVCLITTLFATDFFEIKAVKEIEPALKKQLIISTVLMTVGIAVVSWLALPSSFTIFNFGTQKV 397 (765)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHheecccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccccccc
Confidence 33446999999999999999999999986667777778999999999999999999999999999987543332232233
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCcchHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 005261 403 VKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAA 482 (705)
Q Consensus 403 ~~~~~~~~~~~~Gl~~g~lI~~iTeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~G~~St~~pvl~I~~ai~~s~~l~G 482 (705)
.++|++|+|+++|+++|++|+++||||||++|||||+||++|+||||||||+||++||+||++|+++|++++++||+++|
T Consensus 398 ~~~~~~f~~~~iGl~~g~lI~~iTeYyTs~~y~PV~~IA~aS~tG~ATnII~GlavGm~St~~Pvl~I~~ai~~sy~l~g 477 (765)
T PLN02255 398 VKNWQLFFCVAIGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIYVSFSLAA 477 (765)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhheeccccccccCcchhhhccCCchHHHHHhhhhhhcCcccccccchhhHHHHHHHHHHHHHH
Q 005261 483 MYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGA 562 (705)
Q Consensus 483 lyGialAa~GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~aL~Lf~a 562 (705)
+||+++|++|||||++++|++|+||||+||||||||||++|||||||||+||++||||||+|||||||||+|+||+||++
T Consensus 478 lyGiaiAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~~VR~~TD~LDAvGNTTkAi~KGfAIGSAaLaalaLF~a 557 (765)
T PLN02255 478 MYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGA 557 (765)
T ss_pred HHHHHHHHHHHHHHhHHhheeecccCcccCccCHHHHhcCCHHHHHHhhhhcccCCchhhhcccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHH
Q 005261 563 FVSRAAISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDAS 642 (705)
Q Consensus 563 y~~~~~~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aA 642 (705)
|+++.++..+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||||||||||+||||+||||||||+|
T Consensus 558 y~~~~~~~~~~l~~P~Vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeG~~kPDY~~cV~I~T~aA 637 (765)
T PLN02255 558 FVSRAGISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDAS 637 (765)
T ss_pred HHHhcCCCeeecCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhcCCCCCChHHHHHHHHHHH
Confidence 99988877899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchhhHHHHhhHHHHHhhhhhhHHHHhhHHHHHHHHHHHHhhcccccccchhhhhhhc
Q 005261 643 IKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEVC 704 (705)
Q Consensus 643 lkeMi~Pgll~vl~PlivG~l~G~~al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKyIE~~ 704 (705)
|||||.|+++++++|+++|++||+++++|+|+|++++|++||+||+|+||||||||||||++
T Consensus 638 lkeMi~Pgll~v~~Pi~vg~~~G~~al~GlL~G~~vsGv~lAi~maNaGGAWDNAKKyIE~G 699 (765)
T PLN02255 638 IKEMIPPGALVMLTPLIVGTLFGVETLSGVLAGALVSGVQIAISASNTGGAWDNAKKYIEAG 699 (765)
T ss_pred HHhhhHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999974
No 2
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=100.00 E-value=8.8e-225 Score=1855.07 Aligned_cols=633 Identities=85% Similarity=1.304 Sum_probs=589.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCchhhhhhcCCCCccccHHHHHHHHHHHHhHHH
Q 005261 12 EILIPVCAVIGIAFALVQWVLVSNIKLSPARDASGNSPGAGGGKNGCTDYLIEEEEGLNDHNVVIKCAEIQSAISEGATS 91 (705)
Q Consensus 12 ~~~~~~~~~~~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~m~~Is~~I~eGA~a 91 (705)
.|+++++++++++|++++++|| +|+|+| +|||||||++|||||++
T Consensus 4 ~~~~~~~~~~gl~~a~~~~~~v-----------------------------~~~~~G------~~~M~~Ia~~I~eGA~a 48 (697)
T TIGR01104 4 EILIPVCAVIGIAYAVLQWVWV-----------------------------SRVKLG------TAKMAEIQQAISEGATA 48 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----------------------------HcCCCC------cHHHHHHHHHHHHHHHH
Confidence 4677889999999999999987 367889 99999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccccccccCCcccCCCccCCcchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 005261 92 FLFTEYQYVGVFMVAFAILIFLFLGSVEGFSTKSQACTYDPFKMCKPALATAAFSTVSFLLGGITSVVSGFLGMKIATFA 171 (705)
Q Consensus 92 fL~~qyk~i~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~Fl~Ga~~S~laG~iGM~vAt~a 171 (705)
||+||||++++|++++++++++++.+.+. .+++++++|++|++||.+|||+|||+|||+
T Consensus 49 fL~rqyk~i~~~~vi~~v~l~~~~~~~~~---------------------~~~~~a~~Fl~Ga~~S~laG~iGM~iat~a 107 (697)
T TIGR01104 49 FLFTEYKYVAVFMVAFAVLIFVFLGSREG---------------------FSDFSTVAFLLGAVTSLLAGYLGMKIATYA 107 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc---------------------chhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999998765432110 012799999999999999999999999999
Q ss_pred hHhhHHHHhcChhHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhHhHhhhcchhhHHHHHHHhhccc
Q 005261 172 NARTTLEARKGVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWSGLFEAITGYGLGGSSMALFGRVGGGI 251 (705)
Q Consensus 172 NvRta~aA~~~~~~al~vAfrgGsVmG~~v~glgLl~l~~~~~~~~~~~~~~~~~~~~~l~gf~~GaS~iALFaRvGGGI 251 (705)
|+|||+|||++++++|++|||||+||||+|+|++|+++.++|++|+.+++++..+++++++||+||+|++|||+|+||||
T Consensus 108 NvRtA~AA~~~~~~al~vafrgGaVmGl~vvgl~Llgl~~~~~i~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGI 187 (697)
T TIGR01104 108 NARTTLEARKGVGKALIVAFRSGAVMGFLLAGLGLLVLYITILVFKIYYGDDWEGLFEPITGYGFGASSMALFGRVGGGI 187 (697)
T ss_pred HHHHHHHHHhCHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHhcccCchhhhhhhHHhhhcccHHHHHHHHHHcCce
Confidence 99999999999999999999999999999999999999999999865444444446789999999999999999999999
Q ss_pred chhhhhhccccccccccCCCCCCCCCccchhcccccccccccccchhhhhhhHHHHHHHHHHHHHhhcccccccchhhHH
Q 005261 252 YTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHELTAMLYP 331 (705)
Q Consensus 252 yTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamilg~~~~~~~~~~~~~v~~P 331 (705)
||||||||||||||||+|||||||||||||||||||||||||||||||||||+++++++|+|++...++.+.++..++||
T Consensus 188 yTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADlFESy~~s~iaamvlg~~~~~~~~~~~~~v~~P 267 (697)
T TIGR01104 188 YTKAADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDIAGMGADLFESYAESSCAALVLASISSFGLPHDFTAMLYP 267 (697)
T ss_pred eeeccccchhhhcccccCCCCCCCCCchhHHHhcCCcccchhcccchHHHHHHHHHHHHHHHhhhhhcccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999963322222233468999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccccchhhHHHHH
Q 005261 332 LLISSAGIIVCLITTLFATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNWQLFLC 411 (705)
Q Consensus 332 l~i~a~gi~~Siig~~~~~~~~~~~~~~~~~~aL~~~~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~ 411 (705)
|+++++||++|++|++++| .++++|++++||+++|+|++++++.++++++|++|.++..+..++....++|++|+|
T Consensus 268 l~~~~~gi~~Siig~~~v~----~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~ 343 (697)
T TIGR01104 268 LALSSVGILVCLLTTLFVK----IKPVKEIEPALKKQLIISTVLMTVGVAVISWVALPTGFTIFNFGTQKEVSNWQLFLC 343 (697)
T ss_pred HHHHHHHHHHHHHHheEEe----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchHHHHHH
Confidence 9999999999999999864 455668999999999999999999999999999987544322222234457899999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCcchHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005261 412 VAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAAL 491 (705)
Q Consensus 412 ~~~Gl~~g~lI~~iTeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~G~~St~~pvl~I~~ai~~s~~l~GlyGialAa~ 491 (705)
.++|+++|++|+++||||||++||||||||++|+||||||||+||++||+||++|+++|+++++.||+++|+||+|+|++
T Consensus 344 ~~~Gl~~g~lI~~iTeYyTs~~y~PV~~IA~as~tG~AtnII~Gla~Gm~St~~pvl~I~~~i~~sy~~~GlyGiaiAa~ 423 (697)
T TIGR01104 344 VAVGLWAGLLIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAASIIVSFSFAGMYGIAMAAL 423 (697)
T ss_pred HHHHHHHHHHHHHhheeecCCCCCcHHHHHHHhCcCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhheeccccccccCcchhhhccCCchHHHHHhhhhhhcCcccccccchhhHHHHHHHHHHHHHHHHhhhccce
Q 005261 492 GMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAIST 571 (705)
Q Consensus 492 GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~aL~Lf~ay~~~~~~~~ 571 (705)
|||||++++|++|+||||+||||||||||+|||||||+||+||++||||||++||||||||+|+||+||++|+++.++..
T Consensus 424 GMLst~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~TD~LDavGNTT~Ai~KGfAIGSAaL~alaLF~ay~~~~~~~~ 503 (697)
T TIGR01104 424 GMLSTAGTGLAIDAYGPISDNAGGIAEMAGLPHRVRERTDALDAVGNTTAAIGKGFAIGSAALVALALFGAFVSRAVITT 503 (697)
T ss_pred HHHHHhhheeeeecccCcccCcccHHHHhcCCHHHHHhhhhccccCCcchhhccceehhhHHHHHHHHHHHHHHHhccCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred eecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhh
Q 005261 572 VDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGA 651 (705)
Q Consensus 572 ~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgl 651 (705)
+|+.||+|++|+|+|+|+|||||+++|+||||+|++||||||||||||||||||++||||+||||||||+||||||+|++
T Consensus 504 ~~l~~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGi~eG~~kPdY~~cV~I~T~aAlkeMi~Pgl 583 (697)
T TIGR01104 504 VDVLTPKVFIGLFVGAMLPYWFSSMTMKSVGRAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGL 583 (697)
T ss_pred eecCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCCcHHHHHHHHHHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHhhhhhhHHHHhhHHHHHHHHHHHHhhcccccccchhhhhhhc
Q 005261 652 LVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEVC 704 (705)
Q Consensus 652 l~vl~PlivG~l~G~~al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKyIE~~ 704 (705)
+++++|+++|++||+++++|+|+|++++|++||+||+|+||||||||||||++
T Consensus 584 l~i~~Pi~vG~~~G~~al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKyIE~G 636 (697)
T TIGR01104 584 LVMLTPLIVGFLFGVETLSGVLAGVLVSGVQIAISASNTGGAWDNAKKYIEAG 636 (697)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999975
No 3
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=1.8e-220 Score=1829.86 Aligned_cols=636 Identities=39% Similarity=0.642 Sum_probs=573.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCchhhhhhcCCCCccccHHHHHHHHHHHHhHHHHHHHHh
Q 005261 18 CAVIGIAFALVQWVLVSNIKLSPARDASGNSPGAGGGKNGCTDYLIEEEEGLNDHNVVIKCAEIQSAISEGATSFLFTEY 97 (705)
Q Consensus 18 ~~~~~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~m~~Is~~I~eGA~afL~~qy 97 (705)
+++++|+||+++++|| +|||+| +|||||||++|||||++||+|||
T Consensus 2 ~~~l~l~~a~~~~~~v-----------------------------~~~~~G------~~~M~~Ia~~I~eGA~afL~~qy 46 (730)
T PLN02277 2 VCIISLLFSLYLTKWV-----------------------------LAKDEG------PPEMVEISDAIRDGAEGFFRTQY 46 (730)
T ss_pred hHHHHHHHHHHHHHHH-----------------------------HcCCCC------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999987 367889 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCcccCCCccCCcchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHH
Q 005261 98 QYVGVFMVAFAILIFLFLGSVEGFSTKSQACTYDPFKMCKPALATAAFSTVSFLLGGITSVVSGFLGMKIATFANARTTL 177 (705)
Q Consensus 98 k~i~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~Fl~Ga~~S~laG~iGM~vAt~aNvRta~ 177 (705)
|++++|++++++++++++.+. ..+.+ |. ....+....++++++||++|++||.+|||+|||+|||+|+|||+
T Consensus 47 k~i~~~~vv~~~~l~~~~~~~-~~~~~--~~-----~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aNvRtA~ 118 (730)
T PLN02277 47 GTISKMAVVLAFVILGIYLFR-SLTPQ--QE-----AAGLGRATSAYITVASFLLGALCSGIAGYVGMWVSVRANVRVSS 118 (730)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-ccccc--cc-----cccccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999987654321 01111 00 01112223467899999999999999999999999999999999
Q ss_pred HHhcChhHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcCC------CcchhhHhHhhhcchhhHHHHHHHhhccc
Q 005261 178 EARKGVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGD------DWSGLFEAITGYGLGGSSMALFGRVGGGI 251 (705)
Q Consensus 178 aA~~~~~~al~vAfrgGsVmG~~v~glgLl~l~~~~~~~~~~~~~------~~~~~~~~l~gf~~GaS~iALFaRvGGGI 251 (705)
|||++++++|++|||||+||||+|+||+|+++.++|++|..++.. +..+.++.++||+||+|++|||+|+||||
T Consensus 119 AA~~~~~~al~vAfrgGaVmGl~vvgl~Llgl~~~~~i~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGI 198 (730)
T PLN02277 119 AARRSAREALQIAVRAGGFSALVVVGMTVLGVAILYATFYVWLGVDSPGGMKVTDLPLLLVGYGFGASFVALFAQLGGGI 198 (730)
T ss_pred HHHhCHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHhhhccHHHHHHHHHHcCce
Confidence 999999999999999999999999999999999999888643321 11235779999999999999999999999
Q ss_pred chhhhhhccccccccccCCCCCCCCCccchhcccccccccccccchhhhhhhHHHHHHHHHHHHHhhc--ccccccchhh
Q 005261 252 YTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSF--GINHELTAML 329 (705)
Q Consensus 252 yTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamilg~~~~~--~~~~~~~~v~ 329 (705)
||||||||||||||||+|||||||||||||||||||||||||||||||||||++++|++|+|++.... +.......++
T Consensus 199 yTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGDvAGmgADLFESy~~siiaamiLg~~~~~~~~~~~~~~~v~ 278 (730)
T PLN02277 199 YTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAKRCKIEDPSGFIL 278 (730)
T ss_pred eeeccccchhhhhhhhcCCCCCCCCCchHHHHHhCCcccccccccchhHHHHHHHHHHHHHHHHHHhhccCcccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999964310 1111124599
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccc---ccCchHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccccchhh
Q 005261 330 YPLLISSAGIIVCLITTLFATDIFEIKA---VKEIEPSLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNW 406 (705)
Q Consensus 330 ~Pl~i~a~gi~~Siig~~~~~~~~~~~~---~~~~~~aL~~~~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~ 406 (705)
|||+++++||++|++|++++|...++++ .++++++||+++|+|++++++.++++++|++.+. ..+..||
T Consensus 279 ~Pl~i~~~gii~Siig~~~vr~~~~~~~~~~~~~p~~aL~~g~~vs~~l~~v~~~~~~~~~l~~~--------~~~~~~~ 350 (730)
T PLN02277 279 FPLVVHSFDLVVSSIGILSIKGTRDSSVKSPVEDPMAVLQKGYSVTIILAVVTFGASTRWLLYTE--------QAPSAWF 350 (730)
T ss_pred HHHHHHHHHHHHHHHHHheEeccCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cccchHH
Confidence 9999999999999999999752111001 2478999999999999999999999998876321 1111367
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCcchHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-----
Q 005261 407 QLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFA----- 481 (705)
Q Consensus 407 ~~~~~~~~Gl~~g~lI~~iTeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~G~~St~~pvl~I~~ai~~s~~l~----- 481 (705)
++|+|+++|+++|++|+++||||||++||||||||++|+||||||||+||++||+||++|+++|++++++||+++
T Consensus 351 ~~f~~~~~Gl~~g~lI~~iTeYYTs~~y~PV~~IA~aS~tG~ATnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~~~~~~ 430 (730)
T PLN02277 351 NFALCGLVGIITAYAFVWISQYYTDYKYEPVRTLALASTTGHGTNIIAGVSLGLESTALPVLVISVAIISAYWLGNTSGL 430 (730)
T ss_pred HHHHHHHHHHHHHHHHHHeeeeeCCCCCCcHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ---------HHHHHHHHHHHHhhhhhhhheeccccccccCcchhhhccCCchHHHHHhhhhhhcCcccccccchhhHHHH
Q 005261 482 ---------AMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSA 552 (705)
Q Consensus 482 ---------GlyGialAa~GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSA 552 (705)
|+||+++|++|||||++++|++|+||||+||||||||||+||||||||||+||++||||||++||||||||
T Consensus 431 ~~~~~~~~~GlyGialAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~~VR~~TD~LDavGNTTaAi~KGfAIGSA 510 (730)
T PLN02277 431 VDENGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSA 510 (730)
T ss_pred ccccccccccHHHHHHHHHHHHhhcceeEEeecccCcccCcccHHHHccCCchhhhhccccccccCcchhhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc------cceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 005261 553 ALVSLALFGAFVSRAA------ISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGT 626 (705)
Q Consensus 553 aL~aL~Lf~ay~~~~~------~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~ 626 (705)
+|++|+||++|+++++ +..+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||||||||||
T Consensus 511 aL~alaLF~ay~~~~~~~~~~~~~~~~l~~p~Vl~GlliG~mlpflFsal~m~AVg~aA~~mVeEVRRQFreipGi~eG~ 590 (730)
T PLN02277 511 ALASFLLFSAYMDEVSAFAGVPFKEVDIAIPEVFVGGLLGSMLIFLFSAWACAAVGRTAQEVVNEVRRQFAERPGIMDYK 590 (730)
T ss_pred HHHHHHHHHHHHHHhhhhhccccceeeCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCC
Confidence 9999999999998753 3569999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHHHhh------------hhhhHHHHhhHHHHHHHHHHHHhhcccccc
Q 005261 627 AKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFF------------GVETLSGVLAGSLVSGVQIAISASNTGGAW 694 (705)
Q Consensus 627 ~kPDY~~cV~IsT~aAlkeMi~Pgll~vl~PlivG~l~------------G~~al~GlL~G~~vsG~~lAi~m~NaGGAW 694 (705)
+||||+||||||||+||||||+|+++++++|+++|++| |+++++|+|+|++++|++||+||+|+||||
T Consensus 591 ~kPdY~~cV~I~T~aAlreMi~Pgllail~Pi~vg~~~~~~G~~~~~~~~g~~al~GlL~G~~vsGv~lAi~m~NaGGAW 670 (730)
T PLN02277 591 EKPDYGRCVAIVASAALREMIKPGALAVISPIVVGLVFRILGYATGQPLLGAKVVAGMLMFATVSGILMALFLNTAGGAW 670 (730)
T ss_pred CCCChHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 99999999999999999999999999999999999984 679999999999999999999999999999
Q ss_pred cchhhhhhhc
Q 005261 695 DNAKKYIEVC 704 (705)
Q Consensus 695 DNAKKyIE~~ 704 (705)
||||||||++
T Consensus 671 DNAKKyIE~G 680 (730)
T PLN02277 671 DNAKKYIETG 680 (730)
T ss_pred HhHHHHHhcC
Confidence 9999999974
No 4
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=100.00 E-value=1.2e-219 Score=1826.33 Aligned_cols=623 Identities=53% Similarity=0.875 Sum_probs=561.0
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCchhhhhhcCCCCccccHHHHHHHHHHHHhHHHHHHHHhH
Q 005261 19 AVIGIAFALVQWVLVSNIKLSPARDASGNSPGAGGGKNGCTDYLIEEEEGLNDHNVVIKCAEIQSAISEGATSFLFTEYQ 98 (705)
Q Consensus 19 ~~~~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~m~~Is~~I~eGA~afL~~qyk 98 (705)
++++++||+++++||+ |+|+| +++||||+++|||||++||+||||
T Consensus 1 ~~~~l~~a~~~~~~v~-----------------------------~~~~G------~~~m~~Ia~~I~eGA~aFL~reYk 45 (682)
T PF03030_consen 1 AVLGLIFALFLARWVL-----------------------------KQDEG------NEKMQEIAAAIQEGAMAFLKREYK 45 (682)
T ss_dssp -HHHHHHHHHHHHHHH-----------------------------TS----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHh-----------------------------cCCCC------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999873 67889 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccCCcccCCCccCCcchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHH
Q 005261 99 YVGVFMVAFAILIFLFLGSVEGFSTKSQACTYDPFKMCKPALATAAFSTVSFLLGGITSVVSGFLGMKIATFANARTTLE 178 (705)
Q Consensus 99 ~i~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~Fl~Ga~~S~laG~iGM~vAt~aNvRta~a 178 (705)
++++|+++++++|++++...++ .++++++||++|++||.+|||+||++|||+|+||+++
T Consensus 46 ~i~~~~vi~~~ll~~~~~~~~~---------------------~~~~taiaFliGa~~S~laGyiGM~vAt~aN~Rta~A 104 (682)
T PF03030_consen 46 TIAIFIVIVAILLFFLLGFLGG---------------------QGWWTAIAFLIGALCSALAGYIGMRVATRANVRTANA 104 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCT---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccc---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHH
Confidence 9999999999999887643111 4689999999999999999999999999999999999
Q ss_pred H-hcChhHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcC-CCcchhhHhHhhhcchhhHHHHHHHhhcccchhhh
Q 005261 179 A-RKGVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYG-DDWSGLFEAITGYGLGGSSMALFGRVGGGIYTKAA 256 (705)
Q Consensus 179 A-~~~~~~al~vAfrgGsVmG~~v~glgLl~l~~~~~~~~~~~~-~~~~~~~~~l~gf~~GaS~iALFaRvGGGIyTKAA 256 (705)
| ++++++||++|||+|+||||+|+|++|++++++|++|...+. .+.++.+++++||+||+|++|||+|+|||||||||
T Consensus 105 Ar~~gl~~AL~vAfrgGaVmGl~vvglgLlgl~~l~~i~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKAA 184 (682)
T PF03030_consen 105 ARTRGLNKALQVAFRGGAVMGLSVVGLGLLGLSILFLIFSAFFGKTNPENAPEALSGFGFGASSIALFARVGGGIYTKAA 184 (682)
T ss_dssp CC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCChHhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHhhcchHHHHHHHHHHcCceehhHH
Confidence 9 499999999999999999999999999999999999876443 33466889999999999999999999999999999
Q ss_pred hhccccccccccCCCCCCCCCccchhcccccccccccccchhhhhhhHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Q 005261 257 DVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHELTAMLYPLLISS 336 (705)
Q Consensus 257 DVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamilg~~~~~~~~~~~~~v~~Pl~i~a 336 (705)
|||||||||||+|||||||||||||||||||||||||||+|||||||+++++++|+|+.........+...++|||++++
T Consensus 185 DVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~sivaamilg~~~~~~~~~~~~~v~~Pl~i~~ 264 (682)
T PF03030_consen 185 DVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDVAGMGADLFESYVVSIVAAMILGSTLFGTNGFNFSGVLFPLLIAA 264 (682)
T ss_dssp HHHHHHHHHTTS---TT-TT-TTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTT-HHHHTHHHHHHH
T ss_pred HHhhHHHHHHhhCCCCCCcccchHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998653211122347999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccccchhhHHHHHHHHHH
Q 005261 337 AGIIVCLITTLFATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNWQLFLCVAVGL 416 (705)
Q Consensus 337 ~gi~~Siig~~~~~~~~~~~~~~~~~~aL~~~~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~Gl 416 (705)
+||++|++|++++|.. +.++.++++|+||+|+++|+++++++++++++|++..+. ......||++|+|.++|+
T Consensus 265 ~gii~Siig~~~v~~~-~~~~~~~~~~aL~~g~~vs~~l~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~iGl 337 (682)
T PF03030_consen 265 VGIIASIIGIFFVRTK-KGATSKDPMKALRRGYIVSSILSIILFFFLTYWLLGFSF------FGSGISWWGLFGCVLIGL 337 (682)
T ss_dssp HHHHHHHHHHHHHHTT----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSEETT------EEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHheeEEEec-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccCCcchHHHHHHHHHHH
Confidence 9999999999998642 333456999999999999999999999999999872221 123457899999999999
Q ss_pred HHHHHHHHHhhhhccCCCchhHHHHhhcccCcchHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 005261 417 WAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFA-----AMYGIAVAAL 491 (705)
Q Consensus 417 ~~g~lI~~iTeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~G~~St~~pvl~I~~ai~~s~~l~-----GlyGialAa~ 491 (705)
++|++|+++|||||||+||||||||++|+||||||||+|+++||+||++|+++|++++++||+++ |+||+|+|++
T Consensus 338 ~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnII~Gla~G~~St~~pvl~i~~~i~~sy~l~~~~~~GlyGiaiAa~ 417 (682)
T PF03030_consen 338 VAGVLIGFITEYYTSYSYRPVREIAEASETGPATNIISGLAVGMESTAIPVLVIAAAILISYYLGGGSGPGLYGIAIAAV 417 (682)
T ss_dssp HHHHHHHHHHHHHH-TTSHHHHHHHHHGGG-HHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHhhhhhhhheeccccccccCcchhhhccCCchHHHHHhhhhhhcCcccccccchhhHHHHHHHHHHHHHHHHhhh----
Q 005261 492 GMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRA---- 567 (705)
Q Consensus 492 GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~aL~Lf~ay~~~~---- 567 (705)
|||||++++|++|+||||+|||||||||++||||||||||+|||+||||||+|||||||||+|+||+||++|++++
T Consensus 418 GMLst~g~~la~DayGPiaDNAgGIaEMs~l~~~VR~~td~LDa~GNTT~A~~KGfaIgSAaLaal~Lf~a~~~~~~~~~ 497 (682)
T PF03030_consen 418 GMLSTAGIVLAMDAYGPIADNAGGIAEMSGLPEEVREITDALDAVGNTTKAIGKGFAIGSAALAALALFAAYVQEVSLFN 497 (682)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHhHHHHHhhccCcccccccchHHHcCCChhhhhhhHHHhhcCchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --ccceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhh
Q 005261 568 --AISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKE 645 (705)
Q Consensus 568 --~~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlke 645 (705)
....+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||+|||||||+||||+|||||+||+||||
T Consensus 498 ~~~~~~~~l~~p~vl~G~liG~~lpflfsa~~m~aVg~aA~~mV~EvRrQFre~pgi~eg~~~pdy~~cV~I~T~~alke 577 (682)
T PF03030_consen 498 GTSIQSVDLTNPYVLIGLLIGAMLPFLFSALTMKAVGRAAGKMVEEVRRQFREIPGIMEGKAKPDYARCVDISTRAALKE 577 (682)
T ss_dssp --T-S--BTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSS---HHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCChHHHHHHHHHHHHHH
Confidence 567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhHHHHhhHHHHHhhhhhhHHHHhhHHHHHHHHHHHHhhcccccccchhhhhhhc
Q 005261 646 MIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEVC 704 (705)
Q Consensus 646 Mi~Pgll~vl~PlivG~l~G~~al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKyIE~~ 704 (705)
|+.|+++++++|+++|++||+++++|||+|++++|++||+||+|+||||||||||||++
T Consensus 578 mi~P~ll~v~~Pi~vg~~~g~~al~G~L~g~~~sG~~~Ai~m~n~GGAWDNAKKyIE~g 636 (682)
T PF03030_consen 578 MILPGLLAVLAPIVVGFLLGPEALGGLLMGATVSGILLAIFMANAGGAWDNAKKYIEQG 636 (682)
T ss_dssp THHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999974
No 5
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=100.00 E-value=2.3e-215 Score=1778.42 Aligned_cols=599 Identities=51% Similarity=0.829 Sum_probs=564.2
Q ss_pred hhhhcCCCCccccHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccccccccCCcccCCCccCCcchhhh
Q 005261 63 IEEEEGLNDHNVVIKCAEIQSAISEGATSFLFTEYQYVGVFMVAFAILIFLFLGSVEGFSTKSQACTYDPFKMCKPALAT 142 (705)
Q Consensus 63 ~~~~~g~~~~~~~~~m~~Is~~I~eGA~afL~~qyk~i~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (705)
+|||+| +||||||+++|||||++||+||||++++|+++++++++.... .+..
T Consensus 2 ~~~~~G------~~~m~~Ia~~I~eGA~afl~rqyk~i~~~~i~~~~~l~~~~~----------------------~~~~ 53 (666)
T PRK00733 2 LKQPAG------TERMQEIAGAIQEGAMAYLKRQYKTIAIFGVVVAVLLFLPAG----------------------GLFL 53 (666)
T ss_pred CCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------hHHH
Confidence 578899 999999999999999999999999999999999998864310 0124
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhcChhHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 005261 143 AAFSTVSFLLGGITSVVSGFLGMKIATFANARTTLEARKGVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGD 222 (705)
Q Consensus 143 ~~~~ai~Fl~Ga~~S~laG~iGM~vAt~aNvRta~aA~~~~~~al~vAfrgGsVmG~~v~glgLl~l~~~~~~~~~~~~~ 222 (705)
++++++||++|+++|.++||+|||+|||+|+|||++||++++++|++|||+|+||||+|+|++|++++++|++|....
T Consensus 54 ~~~~~~~Fl~Ga~~S~laG~iGM~iat~aN~Rta~aA~~~~~~al~vafr~G~vmGl~vvgl~Llgl~~~~~~~~~~~-- 131 (666)
T PRK00733 54 GWLTAVAFLVGAVFSALAGYIGMRVATRANVRTAQAARKGLGKALKVAFRGGAVMGLLVVGLGLLGVAGLYLVFGLGA-- 131 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 579999999999999999999999999999999999999999999999999999999999999999999998876322
Q ss_pred CcchhhHhHhhhcchhhHHHHHHHhhcccchhhhhhccccccccccCCCCCCCCCccchhcccccccccccccchhhhhh
Q 005261 223 DWSGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGS 302 (705)
Q Consensus 223 ~~~~~~~~l~gf~~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFES 302 (705)
+..+.++.++||+||+|++|||+|+||||||||||||||||||||+|||||||||||||||||||||||||||+||||||
T Consensus 132 ~~~~~~~~l~gf~~GaS~iAlFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlfES 211 (666)
T PRK00733 132 NPDDAPDALVGFGFGASLIALFARVGGGIFTKAADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMGADLFES 211 (666)
T ss_pred cchhhhHHHHHhhhhHHHHHHHHHhcccceecccccchhhhhhhhcCCCCCCCCCcchHHHhhcccchhhccccchHHHH
Confidence 22346789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHH
Q 005261 303 YAESSCAALVVASISSFGINHELTAMLYPLLISSAGIIVCLITTLFATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIAI 382 (705)
Q Consensus 303 y~~si~aamilg~~~~~~~~~~~~~v~~Pl~i~a~gi~~Siig~~~~~~~~~~~~~~~~~~aL~~~~~~s~~l~~i~~~~ 382 (705)
|+++++++|+++.... ....++..++|||+++++|+++|++|++++ |.+++++++++||+++|+|++++++++|+
T Consensus 212 y~~sivaamilg~~~~-~~~~~~~~v~~Pl~i~~~gii~Siig~~~v----~~~~~~~~~~aL~~g~~~s~~l~~v~~~~ 286 (666)
T PRK00733 212 YAVTIVAAMVLGAAAA-DAAFGVAGVLFPLLIAAVGIIASIIGIFFV----RLGKGGNPMKALNRGLIVTAVLSIVLTYF 286 (666)
T ss_pred HHHHHHHHHHHhhhcc-ccccchhHHHHHHHHHHHHHHHHHHHHeeE----EeCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997321 112345679999999999999999999986 45666789999999999999999999999
Q ss_pred HHHHhcCccccccccCccccchhhHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCcchHHHHHhhhhhhh
Q 005261 383 VSWIALPSSFTIFNFGSQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKS 462 (705)
Q Consensus 383 ~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~Gl~~g~lI~~iTeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~G~~S 462 (705)
+++|++|... ...+||++|+|+++|+++|++|+++||||||++|||||+||++|+||||||||+|+++||+|
T Consensus 287 ~~~~~l~~~~--------~~~~~~~~f~~~~iGlv~g~li~~iTeYyTs~~~~PVr~IA~as~tG~aTnIi~Gla~Gm~S 358 (666)
T PRK00733 287 ATYWLLGDGA--------DGFTWLNLFGAVLIGLVVGALIGLITEYYTSTEYRPVKEIAEASRTGPATNIISGLAVGMES 358 (666)
T ss_pred HHHHHhcccc--------cccccHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHhCcCchHHHHHHHHHHHHH
Confidence 9999997531 22457899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhheeccccccccCcchhhhccCCchHHHHHhhhhhhcCc
Q 005261 463 VIIPIFAIAVSIFVSFSF----AAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGN 538 (705)
Q Consensus 463 t~~pvl~I~~ai~~s~~l----~GlyGialAa~GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GN 538 (705)
|++|+++|++++++||++ +|+||+++||+|||||++++|++|+||||+|||||||||+++|||||+|||+||++||
T Consensus 359 t~~pvl~i~~ai~~sy~l~~~~~GlyGia~Aa~GMLst~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGN 438 (666)
T PRK00733 359 TALPVLVIVAAILGAYLLGMAGAGLYGIALAAVGMLSTAGIIVAVDAYGPITDNAGGIAEMAGLPPEVRKITDALDAVGN 438 (666)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHhHHHHhhheeeccccCccchHHHcCCChhHhhhChHhHhccc
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHhhh-------ccceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHH
Q 005261 539 TTAAIGKGFAIGSAALVSLALFGAFVSRA-------AISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEE 611 (705)
Q Consensus 539 TTaAi~KGfAIGSAaL~aL~Lf~ay~~~~-------~~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~E 611 (705)
||||++||||||||+|+||+||++|+++. ....+|+.||+|++|+|+|+|+|||||+++|+||||+|++||||
T Consensus 439 TT~A~~KGfaIGSAaLaal~Lf~ay~~~~~~~~~~~~~~~~~l~~p~vl~GlliG~~lpflFs~l~m~AVg~aA~~mV~E 518 (666)
T PRK00733 439 TTKAVTKGFAIGSAALAALALFAAYIDELAGLLGGGGILSLDLSNPYVLVGLLIGGMLPFLFSALAMTAVGRAAGAMVEE 518 (666)
T ss_pred chhHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 45679999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHHHhhhhhhHHHHhhHHHHHHHHHHHHhhccc
Q 005261 612 VRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTG 691 (705)
Q Consensus 612 VRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgll~vl~PlivG~l~G~~al~GlL~G~~vsG~~lAi~m~NaG 691 (705)
|||||||+||||||++||||+|||||+||+||||||+|+++++++|+++|++||+++++|||+|++++|++||+||+|+|
T Consensus 519 VRrQFre~pGi~eg~~kPdY~~cV~I~T~~AlkeMi~P~ll~v~~Pi~vG~~lG~~al~G~L~G~~vsG~~lAi~m~NaG 598 (666)
T PRK00733 519 VRRQFREIPGIMEGTAKPDYARCVDISTKAALKEMILPGLLAVLAPIAVGFLLGPEALGGLLAGAIVTGLLLAIFMANAG 598 (666)
T ss_pred HHHHHhcCcccccCCCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhc
Q 005261 692 GAWDNAKKYIEVC 704 (705)
Q Consensus 692 GAWDNAKKyIE~~ 704 (705)
|||||||||||++
T Consensus 599 GAWDNAKKyIE~g 611 (666)
T PRK00733 599 GAWDNAKKYIEDG 611 (666)
T ss_pred hhHHHHHHHHhcC
Confidence 9999999999974
No 6
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=1.8e-212 Score=1694.03 Aligned_cols=626 Identities=47% Similarity=0.759 Sum_probs=584.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCchhhhhhcCCCCccccHHHHHHHHHHHHhHH
Q 005261 11 AEILIPVCAVIGIAFALVQWVLVSNIKLSPARDASGNSPGAGGGKNGCTDYLIEEEEGLNDHNVVIKCAEIQSAISEGAT 90 (705)
Q Consensus 11 ~~~~~~~~~~~~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~m~~Is~~I~eGA~ 90 (705)
..++.++||+++++||.|.++|| +++|+| |||||||+.+|||||+
T Consensus 5 ~~~l~i~~gl~sv~~A~~~~~sV-----------------------------l~~~~G------n~rm~eIa~aIreGA~ 49 (703)
T COG3808 5 VLYLAIACGLLSVLYAAWAAKSV-----------------------------LRADAG------NERMKEIAAAIREGAM 49 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------------------HhccCC------cHHHHHHHHHHHHhHH
Confidence 45677899999999999999976 478899 9999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhccccccccCCcccCCCccCCcchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 005261 91 SFLFTEYQYVGVFMVAFAILIFLFLGSVEGFSTKSQACTYDPFKMCKPALATAAFSTVSFLLGGITSVVSGFLGMKIATF 170 (705)
Q Consensus 91 afL~~qyk~i~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~Fl~Ga~~S~laG~iGM~vAt~ 170 (705)
+||+||||+|+++.+++++++.+++. .|.++++|++|++.|..+||+||+++||
T Consensus 50 ayL~rqy~tiavv~ivva~ll~~~l~--------------------------~~~ta~~Fl~GAv~S~~AG~~GM~vstr 103 (703)
T COG3808 50 AYLARQYKTIAVVGIVVAILLAWFLL--------------------------SWLTAIGFLLGAVLSAAAGFAGMHVSTR 103 (703)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHhhhcccceeeeeh
Confidence 99999999999999999988876542 3689999999999999999999999999
Q ss_pred hhHhhHHHHhcChhHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcC--CCcchhhHhHhhhcchhhHHHHHHHhh
Q 005261 171 ANARTTLEARKGVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYG--DDWSGLFEAITGYGLGGSSMALFGRVG 248 (705)
Q Consensus 171 aNvRta~aA~~~~~~al~vAfrgGsVmG~~v~glgLl~l~~~~~~~~~~~~--~~~~~~~~~l~gf~~GaS~iALFaRvG 248 (705)
+|+||||||++++.++|++|||+|+|||++|+|++||++++.|+++....+ ++.+.....++||+||||++++|+|+|
T Consensus 104 AN~RtAqAAs~~l~~al~vaf~sGaV~Gl~VaGlaLlg~s~~ylv~~~~~g~~~~~~~~i~~lv~~gfGaSlIslFaRvG 183 (703)
T COG3808 104 ANVRTAQAASTGLGKALDVAFKSGAVMGLSVAGLALLGLSLYYLVLTSVLGHEPNLRIVIDSLVGLGFGASLISLFARVG 183 (703)
T ss_pred hhhHHHHHHHhhhhhhhhhhcccCcchhhHHHHHHHHHHHhhhheeecccCCCcccchhhhhhhhhccchHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999988875443 223445678999999999999999999
Q ss_pred cccchhhhhhccccccccccCCCCCCCCCccchhcccccccccccccchhhhhhhHHHHHHHHHHHHHhhcccccccchh
Q 005261 249 GGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHELTAM 328 (705)
Q Consensus 249 GGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamilg~~~~~~~~~~~~~v 328 (705)
||||||+||||+|||||||+||||||||||+||||||||||||||||+|||||||+++++++|+|++.+..+...-...+
T Consensus 184 GGIfTKaADvgaDLVGKVEagIPEDDPRNpatIADNVGDNVGD~AGM~ADLfEsYvvtvvAtm~Laai~f~~~~~~~~~i 263 (703)
T COG3808 184 GGIFTKAADVGADLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFESYVVTVVATMVLAAIFFLGTETIEAVI 263 (703)
T ss_pred CceecchhhcccccccccccCCCCCCCCCccccccccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998753322223468
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccccchhhHH
Q 005261 329 LYPLLISSAGIIVCLITTLFATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNWQL 408 (705)
Q Consensus 329 ~~Pl~i~a~gi~~Siig~~~~~~~~~~~~~~~~~~aL~~~~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~ 408 (705)
+|||.+.+++|++|++|+||+ |.+++++++.+|++++|.+.+++++.+++.++.++..+ ..+ -.+..+..+++
T Consensus 264 lyPl~i~a~~i~~Si~gtffV----k~~~~~~i~~al~~gl~~t~~Lsvv~~~~~t~~l~g~~--~~~-v~g~~~~~~~l 336 (703)
T COG3808 264 LYPLAICAVGIITSIIGTFFV----KLGKSGSIMGALYKGLIATGILSVVALAFVTSFLLGGT--IGT-VAGMSIGAINL 336 (703)
T ss_pred HHHHHHHHHHHHHHHHhheEE----EeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccc-cccccccchhh
Confidence 899999999999999999996 57788999999999999999999999999999887522 111 01233456789
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCcchHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005261 409 FLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAV 488 (705)
Q Consensus 409 ~~~~~~Gl~~g~lI~~iTeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~G~~St~~pvl~I~~ai~~s~~l~GlyGial 488 (705)
|+|.++|++++.+|+++||||||++|||||+|||+|.|||+||||+||++|||||++|.++|.++|+.+|+++|+||+++
T Consensus 337 f~~~~~Glv~~~lIv~iTeyYT~t~~rPv~~ia~as~tG~~tnii~GlavgleSt~~P~iviv~gIi~~~~~~GLyG~AI 416 (703)
T COG3808 337 FFCGVIGLVVTALIVVITEYYTSTNYRPVNSIAQASVTGHGTNIIQGLAVGLESTALPAIVIVIGIIITYQLAGLYGTAI 416 (703)
T ss_pred HHHHHHHHHHHHHheeeeeeeccCCcchHHHHHHhhccCcchhhhhhhhhhhhhccccHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhheeccccccccCcchhhhccCCchHHHHHhhhhhhcCcccccccchhhHHHHHHHHHHHHHHHHhhhc
Q 005261 489 AALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAA 568 (705)
Q Consensus 489 Aa~GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~aL~Lf~ay~~~~~ 568 (705)
|++|||++++++++.|+|||++||||||+||+|||||||++||+||+|||||||+|||||||||+|+||+||++|..+..
T Consensus 417 Aa~~ML~~agmiva~DayGPVtDNAGGIaEMa~LppEVR~~TD~LDAVGNTTkAvtKGyAIGSA~l~AL~LFAaY~~~~~ 496 (703)
T COG3808 417 AAVGMLSTAGMIVALDAYGPVTDNAGGIAEMAGLPPEVRKITDALDAVGNTTKAVTKGYAIGSAALGALVLFAAYSFDLK 496 (703)
T ss_pred HHHHHHHHhheEEEeeccCCcccCccchHHHcCCCHHHHHhhHHHHhccchhhhhhcccchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ----------------cceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChh
Q 005261 569 ----------------ISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYA 632 (705)
Q Consensus 569 ----------------~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~ 632 (705)
...+|+.||+|+.|+++|+++||+||+++|.||||+|++|||||||||||+|||||||+||||+
T Consensus 497 ~~a~~g~~~~~~~~~~~~~~dl~np~VvaGl~~G~~lpylFs~~tmtAVgrAA~~vV~EVRRQfRE~PGimegk~kPdY~ 576 (703)
T COG3808 497 YFAANGKPYPYFADMGALSLDLSNPYVVAGLLLGGLLPYLFSGITMTAVGRAAMEVVEEVRRQFREIPGIMEGKAKPDYG 576 (703)
T ss_pred hHHhcCCCCcccccccceeeecCChHHHHHHHHhhHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhCCccccCCcCCchh
Confidence 1248999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcchhhHHHHhhHHHHHhhhhhhHHHHhhHHHHHHHHHHHHhhcccccccchhhhhhhc
Q 005261 633 TCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEVC 704 (705)
Q Consensus 633 ~cV~IsT~aAlkeMi~Pgll~vl~PlivG~l~G~~al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKyIE~~ 704 (705)
|||||+||+|||||+.|++++|++|+++|+++|+++|+|+|+|.+++|+++||+|+|+||||||||||||++
T Consensus 577 R~Vdi~T~aAl~eMi~P~llavl~Plvvgli~G~~aLgg~L~G~iv~G~~~Ai~m~n~GGAWDNAKK~iE~G 648 (703)
T COG3808 577 RCVDILTKAALKEMIIPGLLAVLAPLVVGLILGFAALGGLLLGVIVNGLFVAISMANGGGAWDNAKKYIEDG 648 (703)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHhhccCCCcchhhhhhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974
No 7
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=85.56 E-value=25 Score=41.06 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=39.8
Q ss_pred cccchhhhhhccccccccccCCCCCCCC-CccchhcccccccccccccchhhhhhhHHHHHHHHHHHHHhhcccccccch
Q 005261 249 GGIYTKAADVGADLVGKVERNIPEDDPR-NPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHELTA 327 (705)
Q Consensus 249 GGIyTKAADVGADLVGKVEagIPEDDPR-NPavIADnVGDNVGD~AGmgADLFESy~~si~aamilg~~~~~~~~~~~~~ 327 (705)
|++=++...+..||- |||||| +++==-=..|+|+ +++.+.++.+.... + ..
T Consensus 132 Gl~K~NiS~llg~ly-------~~~DprrD~gFt~fY~~iNi---------------Gsl~~p~i~~~~~~-----~-~g 183 (498)
T COG3104 132 GLFKPNISSLLGELY-------PKDDPRRDGGFTLFYMGINI---------------GSLIAPIITGLLAI-----N-YG 183 (498)
T ss_pred ccccccHHHHHHHhc-------CCCCcccCCCccEEEEEeeh---------------HHHHHHHHHHHHHH-----h-hC
Confidence 455567777777774 999999 2221111234443 33444444444321 0 01
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhh
Q 005261 328 MLYPLLISSAGIIVCLITTLFATDIF 353 (705)
Q Consensus 328 v~~Pl~i~a~gi~~Siig~~~~~~~~ 353 (705)
-..-+-++++|+...++-..+.|+.+
T Consensus 184 ~~~gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 184 WHVGFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchh
Confidence 11223556777777666666655443
No 8
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=72.69 E-value=26 Score=42.28 Aligned_cols=69 Identities=28% Similarity=0.379 Sum_probs=44.8
Q ss_pred cCChhHHHHHHhhhhHHHHHHhHhHHHHHHH---HHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHH-HHHhhhcch
Q 005261 574 VLTPKVFIGLIVGAMLPYWFSAMTMKSVGSA---ALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTD-ASIKEMIPP 649 (705)
Q Consensus 574 l~~p~Vl~GlliG~~lpflFsal~m~aVg~a---A~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~-aAlkeMi~P 649 (705)
+..|+.+.|+|+|+.+-=++-++.|.-.|-| |.|.||+ |-..||-.|.|+.+|-==|. .=+|..--|
T Consensus 595 ~~g~~al~G~L~g~~~sG~~~Ai~m~n~GGAWDNAKKyIE~---------g~~ggKgS~aHkAaVvGDTVGDP~KDTaGP 665 (682)
T PF03030_consen 595 LLGPEALGGLLMGATVSGILLAIFMANAGGAWDNAKKYIEQ---------GNLGGKGSEAHKAAVVGDTVGDPFKDTAGP 665 (682)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------SHHTTSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhc---------cCcCCCCChhhCCcccCCCCCCCccccCcc
Confidence 3578888888888888888888888888754 5666663 23446777777776643332 236666666
Q ss_pred hh
Q 005261 650 GA 651 (705)
Q Consensus 650 gl 651 (705)
++
T Consensus 666 sl 667 (682)
T PF03030_consen 666 SL 667 (682)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 9
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=53.30 E-value=68 Score=32.60 Aligned_cols=74 Identities=16% Similarity=0.311 Sum_probs=44.1
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHHHhhhhhhHHHH---hhHHHHHHHHH
Q 005261 607 KMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGV---LAGSLVSGVQI 683 (705)
Q Consensus 607 ~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgll~vl~PlivG~l~G~~al~Gl---L~G~~vsG~~l 683 (705)
=+-|++|+++|+. .+-++++-++.+.+.+++.-+.-.+ ..+.+.+.=+++|...+-|| ++-.+++|.+.
T Consensus 103 VifdRIre~~~~~-------~~~~~~~~~~~s~~~tl~r~i~t~~-ttll~~~~L~~~g~~~l~~Fa~~l~iGvi~~~~s 174 (189)
T PF02355_consen 103 VIFDRIREELRAS-------RGKSLREAINISIKQTLSRTIDTSL-TTLLAALILFFFGGGSLKGFALTLIIGVIIGTYS 174 (189)
T ss_dssp HHHHHHHHHHCC--------STS-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHhhhC-------CCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3569999998763 3567889999888888887666433 33444444456666655444 33444556666
Q ss_pred HHHhh
Q 005261 684 AISAS 688 (705)
Q Consensus 684 Ai~m~ 688 (705)
+++.+
T Consensus 175 s~~ia 179 (189)
T PF02355_consen 175 SLFIA 179 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 10
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=50.31 E-value=2.2e+02 Score=30.91 Aligned_cols=101 Identities=22% Similarity=0.408 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccc--CchHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccccchhhHHHHH
Q 005261 334 ISSAGIIVCLITTLFATDIFEIKAVK--EIEPSLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNWQLFLC 411 (705)
Q Consensus 334 i~a~gi~~Siig~~~~~~~~~~~~~~--~~~~aL~~~~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~ 411 (705)
+...+++.-++|..+... +.++++ +-.+..++++.. .++++++..+ |..+|+.+ +.+.|..++-
T Consensus 105 ~G~~Al~liiiGv~lts~--~~~~~~~~~~~~~~~kgi~~-Ll~stigy~~--Y~~~~~~~---------~~~~~~~~lP 170 (269)
T PF06800_consen 105 IGFLALVLIIIGVILTSY--QDKKSDKSSSKSNMKKGILA-LLISTIGYWI--YSVIPKAF---------HVSGWSAFLP 170 (269)
T ss_pred HHHHHHHHHHHHHHHhcc--ccccccccccccchhhHHHH-HHHHHHHHHH--HHHHHHhc---------CCChhHhHHH
Confidence 344456666777776432 222222 223566777764 5666665543 33345432 2346888888
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCcchHHHHHhhhhh
Q 005261 412 VAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGY 460 (705)
Q Consensus 412 ~~~Gl~~g~lI~~iTeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~G~ 460 (705)
-.+|++.+.++-..-+ ++|.++ +. +.-|++.|+-.+.
T Consensus 171 qaiGm~i~a~i~~~~~------~~~~~~--k~----~~~nil~G~~w~i 207 (269)
T PF06800_consen 171 QAIGMLIGAFIFNLFS------KKPFFE--KK----SWKNILTGLIWGI 207 (269)
T ss_pred HHHHHHHHHHHHhhcc------cccccc--cc----hHHhhHHHHHHHH
Confidence 8999987766533322 233332 11 3569999986653
No 11
>PRK11677 hypothetical protein; Provisional
Probab=49.93 E-value=20 Score=35.00 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCchhHHHH
Q 005261 409 FLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVA 441 (705)
Q Consensus 409 ~~~~~~Gl~~g~lI~~iTeYyTS~~~~PVr~IA 441 (705)
|...++|+++|++||++.-.||+.+.+--+++-
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le 35 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQ 35 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHH
Confidence 467789999999999999999987765545444
No 12
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=47.60 E-value=2.4e+02 Score=33.65 Aligned_cols=103 Identities=23% Similarity=0.287 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccccchhhHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhh
Q 005261 364 SLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADS 443 (705)
Q Consensus 364 aL~~~~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~Gl~~g~lI~~iTeYyTS~~~~PVr~IA~a 443 (705)
=|+||+-..+++.++..+.+.|++. .|..-.|.++|-+.+..-|++--+- |. |-=-+.||+
T Consensus 51 yL~rqy~tiavv~ivva~ll~~~l~----------------~~~ta~~Fl~GAv~S~~AG~~GM~v-st--rAN~RtAqA 111 (703)
T COG3808 51 YLARQYKTIAVVGIVVAILLAWFLL----------------SWLTAIGFLLGAVLSAAAGFAGMHV-ST--RANVRTAQA 111 (703)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHHHHHhhhcccceee-ee--hhhhHHHHH
Confidence 3778888777777666666665542 1444456666666666666555443 22 333456777
Q ss_pred cccCcchHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhheecccc
Q 005261 444 CRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYG 507 (705)
Q Consensus 444 s~tG~AtnII~Gla~G~~St~~pvl~I~~ai~~s~~l~GlyGialAa~GMLst~~~~la~DayG 507 (705)
.++| +=.+| -++|.-+.+.|..++.+++|....+-+-.-...
T Consensus 112 As~~----l~~al------------------~vaf~sGaV~Gl~VaGlaLlg~s~~ylv~~~~~ 153 (703)
T COG3808 112 ASTG----LGKAL------------------DVAFKSGAVMGLSVAGLALLGLSLYYLVLTSVL 153 (703)
T ss_pred HHhh----hhhhh------------------hhhcccCcchhhHHHHHHHHHHHhhhheeeccc
Confidence 6664 22222 345555667788888888887766655444433
No 13
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=42.47 E-value=74 Score=35.03 Aligned_cols=115 Identities=18% Similarity=0.247 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhc----cc--eeecC--ChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhcc
Q 005261 547 FAIGSAALVSLALFGAFVSRAA----IS--TVDVL--TPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNT 618 (705)
Q Consensus 547 fAIGSAaL~aL~Lf~ay~~~~~----~~--~~~l~--~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFre 618 (705)
+=-+|+.+.-...++.+..... .. -.+.. ++....+.++=..+.++||-.-. .++-...|+-|+.|+|=.-
T Consensus 202 iifa~sll~~p~~i~~~l~~~~~~~~~~~~i~~~~~~~~~~~~y~~~~~~li~~Fs~~~~-~~~~~p~~iA~~lkk~g~~ 280 (346)
T PF00344_consen 202 IIFASSLLSLPQYIAQFLNSQFPNNWLVSGIAYYFSQNLNSPLYIIFYLILIILFSYFFS-FININPKDIAENLKKSGDY 280 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCSCCSSCCHHHTSSSHHHHHHHHHHHHHHHHHHHHHH-TSSSHHHHHHHHCHCTTSS
T ss_pred HHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHhCCE
Confidence 4445666666666666655321 11 13455 88899999999999999998866 8888888899999999888
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHHHhhh
Q 005261 619 IPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFG 665 (705)
Q Consensus 619 ipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgll~vl~PlivG~l~G 665 (705)
|||+..|++.-+| --++..+.++-.-+.-++++ ..|.+++..++
T Consensus 281 I~GirpG~~T~~y--L~~~i~~~~~~G~~~l~~ia-~~p~~~~~~~~ 324 (346)
T PF00344_consen 281 IPGIRPGKPTEKY--LNKVIPRLSFLGALFLALIA-VLPLIFGLFGG 324 (346)
T ss_dssp SSTCTTSCHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHTTSSS
T ss_pred eCCCCCChhHHHH--HHHHHHHHhhhhHHHHHHHH-HHHHHHHHHcc
Confidence 9999988554444 22334444444445555555 35666666543
No 14
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=41.73 E-value=2.1e+02 Score=35.73 Aligned_cols=93 Identities=20% Similarity=0.317 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhhhhhheeccccccccCcchhhhccCCchHHHHHhhhhh
Q 005261 461 KSVIIPIFAIAVSIFVSFSFAAMYGIA------VAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALD 534 (705)
Q Consensus 461 ~St~~pvl~I~~ai~~s~~l~GlyGia------lAa~GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LD 534 (705)
...++|++.+.+++..++.+.+++|.. ..+..++..+.+.+++| + +|-=++..-||.|+--|+-|
T Consensus 198 ~~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~~~~~~l~~l~lGl~vD-------y--~I~lv~r~~ee~~~g~~~~~ 268 (910)
T TIGR00833 198 ITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNAQTTVLLTALVIGAGTD-------Y--AVFLTGRYHEERRKGESLEE 268 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHH-------H--HHHHHHHHHHHHHcCCCHHH
Confidence 345677777777777777666666543 22333444444555555 2 22223334345555556667
Q ss_pred hcCcccccccchhhHHHHHHHHHHHHHHHH
Q 005261 535 AAGNTTAAIGKGFAIGSAALVSLALFGAFV 564 (705)
Q Consensus 535 a~GNTTaAi~KGfAIGSAaL~aL~Lf~ay~ 564 (705)
|+-.+.+-+++ +|-.++++..+=|.++.
T Consensus 269 Av~~a~~~~g~--~I~~s~lT~~~gf~~l~ 296 (910)
T TIGR00833 269 AAAEALRGTGK--AILGSALTVAVAFLALS 296 (910)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 77777666655 44455555555555443
No 15
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=40.02 E-value=7.6e+02 Score=29.98 Aligned_cols=101 Identities=22% Similarity=0.305 Sum_probs=61.4
Q ss_pred hhhHHHHHH------HHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHhcC----ccccccc
Q 005261 327 AMLYPLLIS------SAGIIVCLITTLFATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIAIVSWIALP----SSFTIFN 396 (705)
Q Consensus 327 ~v~~Pl~i~------a~gi~~Siig~~~~~~~~~~~~~~~~~~aL~~~~~~s~~l~~i~~~~~~~~~l~----~~~~~~~ 396 (705)
.+.||++.+ +=|++-.+++.++.++..+ +..+..+.+.+.+..+.+.+.+.-++...|+-| ..+....
T Consensus 365 a~~Fp~fFG~M~gD~gyGlll~l~sl~l~~~~~~--~~~~~~~~l~~~~~~~~i~t~i~G~l~g~~fG~~~~~~~~p~~~ 442 (660)
T COG1269 365 ALFFPLFFGIMFGDLGYGLLLFLISLLLLRYFKK--RLPEGLKKLGKILLYLGISTIIWGFLYGEFFGPAVLLSTLPIGL 442 (660)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc--ccchhHHHHHHHHHHHHHHHHHHHHHhccccCCccccccCCccc
Confidence 456777654 4477888888887653211 233445777888888888887777777666553 1111000
Q ss_pred -cCccccchh----hHHHHHHHHHHH---HHHHHHHHhhhh
Q 005261 397 -FGSQKVVKN----WQLFLCVAVGLW---AGLIIGFVTEYY 429 (705)
Q Consensus 397 -~g~~~~~~~----~~~~~~~~~Gl~---~g~lI~~iTeYy 429 (705)
+...+..+. ..+..|.++|++ .|.+++++..++
T Consensus 443 ~~~~~~~~~~~~~~~~m~~sl~iG~~hl~~G~~lg~~~~~~ 483 (660)
T COG1269 443 LFVYHGLDEGLLFSNILILSLLIGVLHLSLGLLLGFINRVR 483 (660)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000001111 256778999976 899999998887
No 16
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=33.90 E-value=1.3e+02 Score=31.49 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=35.7
Q ss_pred HHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHH--HhhHHHHHhhhhh---hHHHHhhHHHHHHHH
Q 005261 608 MVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVM--LTPLIVGIFFGVE---TLSGVLAGSLVSGVQ 682 (705)
Q Consensus 608 mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgll~v--l~PlivG~l~G~~---al~GlL~G~~vsG~~ 682 (705)
++|.+||+.|+.+ +.|..+++.-+++..+|..+.=.+..+ +.|+.. +|.+ -++=-+++.++.|.+
T Consensus 171 v~d~i~e~~~~~~-------~~~~~~a~~~a~~~~~~~ii~ttltti~~flpl~~---~~g~~~~~~a~~~~~Gli~~t~ 240 (246)
T TIGR00966 171 VFDRIRENLRKYT-------RKTFTEVINLSINQTLSRTINTSLTTLLAVLALYV---FGGGVIKDFSLALLVGVIVGTY 240 (246)
T ss_pred EehHHHHHHhhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHHHHHHH
Confidence 5688888776422 235677776555544444333222222 223222 1212 244446666777777
Q ss_pred HHHHh
Q 005261 683 IAISA 687 (705)
Q Consensus 683 lAi~m 687 (705)
+++|.
T Consensus 241 ~sl~i 245 (246)
T TIGR00966 241 SSIFI 245 (246)
T ss_pred HHHHh
Confidence 77764
No 17
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=32.04 E-value=1.1e+02 Score=35.43 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=53.6
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHH
Q 005261 589 LPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVG 661 (705)
Q Consensus 589 lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgll~vl~PlivG 661 (705)
+-|+|+.+.++.-|-...|+-|..|+|=..|||+.+| ||--+.+.+..++.++-.-+.-++++++ |-++|
T Consensus 372 fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~IpG~RpG--k~t~~yL~k~i~r~t~~Ga~~l~~ia~l-p~~~~ 441 (474)
T PTZ00219 372 SCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDS--SSMVRVLNRYIPTAASFGGMCIGALTIL-ADFLG 441 (474)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccCcCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4567777777777788889999999999999999888 5555566777777777777777777764 55555
No 18
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=31.13 E-value=4.5e+02 Score=24.62 Aligned_cols=101 Identities=19% Similarity=0.367 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHH
Q 005261 302 SYAESSCAALVVASISSFGINHELTAMLYPLLISSAGIIVCLITTLFATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIA 381 (705)
Q Consensus 302 Sy~~si~aamilg~~~~~~~~~~~~~v~~Pl~i~a~gi~~Siig~~~~~~~~~~~~~~~~~~aL~~~~~~s~~l~~i~~~ 381 (705)
+|..+.+..++++..+.+ .+.+.-.+|..+..+.++++.+|.+..-+ |.+ +|-+-.|..+..+ -.+..+
T Consensus 14 ~~~~tl~~~l~~a~ll~~---~~~~e~~~~~~~~~i~~ls~~~GG~~a~~--~~~-----~kG~l~G~~~Gl~-y~~il~ 82 (116)
T PF12670_consen 14 AYIITLILLLLLALLLYF---TSLSESILPWLVVIIYILSVFIGGFYAGR--KAG-----SKGWLHGLLVGLL-YFLILL 82 (116)
T ss_pred HHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHc-----cchHHHHHHHHHH-HHHHHH
Confidence 344444444444443321 12344567888888888999999887532 111 2455566555422 233344
Q ss_pred HHHHHhcCccccccccCccccchhhHHHHHHHHHHHHHH
Q 005261 382 IVSWIALPSSFTIFNFGSQKVVKNWQLFLCVAVGLWAGL 420 (705)
Q Consensus 382 ~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~Gl~~g~ 420 (705)
.++....++... ......+...|...|.+.|+
T Consensus 83 lis~~~~~~~~~-------~~~~~~~~~~~~~~G~lGG~ 114 (116)
T PF12670_consen 83 LISFLFGPGPFS-------GSSQLLKLLLCLLAGALGGM 114 (116)
T ss_pred HHHHHHccCcch-------HHHHHHHHHHHHHHHHHHhh
Confidence 445544433211 01123467778888887765
No 19
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.97 E-value=1.6e+02 Score=28.39 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHhHHHH------HHHHhH
Q 005261 75 VIKCAEIQSAISEGATSF------LFTEYQ 98 (705)
Q Consensus 75 ~~~m~~Is~~I~eGA~af------L~~qyk 98 (705)
....++=++..++||..| |+|+|-
T Consensus 59 L~~L~drad~L~~~as~F~~~A~klkrk~w 88 (116)
T KOG0860|consen 59 LDELDDRADQLQAGASQFEKTAVKLKRKMW 88 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666788899999998 566663
No 20
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=29.80 E-value=1.2e+02 Score=30.02 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=16.4
Q ss_pred HHHHHHhhccCCCCCCCCCCCChhHHHHH
Q 005261 609 VEEVRRQFNTIPGLMEGTAKPDYATCVKI 637 (705)
Q Consensus 609 V~EVRRQFreipGi~eg~~kPDY~~cV~I 637 (705)
.||.++++|||. +++|.|.+=..+
T Consensus 84 ~~ea~~~L~~I~-----~~~~~y~~~~~~ 107 (193)
T PF06738_consen 84 LEEAIERLDEID-----REPPRYPPWLVI 107 (193)
T ss_pred HHHHHHHHHHHh-----hCCCCCCHHHHH
Confidence 578888888874 445577765554
No 21
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.33 E-value=84 Score=30.08 Aligned_cols=51 Identities=20% Similarity=0.375 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCcchHHHHHhhhhhhhhH
Q 005261 403 VKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVI 464 (705)
Q Consensus 403 ~~~~~~~~~~~~Gl~~g~lI~~iTeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~G~~St~ 464 (705)
.+.+.+..=.+.|+++|++|||++++| +.++..|-=.-.+-|+-.|..+..
T Consensus 43 ~~a~klssefIsGilVGa~iG~llD~~-----------agTsPwglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 43 AQAFKLSSEFISGILVGAGIGWLLDKF-----------AGTSPWGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh-----------cCCCcHHHHHHHHHHHHHHHHHHH
No 22
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=28.29 E-value=6e+02 Score=25.18 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 005261 197 MGFLLAANGLLVLFIAINL 215 (705)
Q Consensus 197 mG~~v~glgLl~l~~~~~~ 215 (705)
.|+.+.++|++...+.+.+
T Consensus 142 ~~i~~~glGlll~~~~~~l 160 (181)
T PF08006_consen 142 FGIGLFGLGLLLIVITFYL 160 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556667777655554443
No 23
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=28.11 E-value=44 Score=33.30 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.4
Q ss_pred HHHhhhhhhhheeccccccccC
Q 005261 491 LGMLSTIATGLAIDAYGPISDN 512 (705)
Q Consensus 491 ~GMLst~~~~la~DayGPIaDN 512 (705)
.+||..+...+--|+||||.|.
T Consensus 49 ~~mL~lL~TS~lp~S~GpI~~~ 70 (149)
T PF12331_consen 49 ILMLNLLSTSVLPDSFGPITDD 70 (149)
T ss_pred HHHHHHHHhccCCCCcCCCCCC
Confidence 5899999999999999999986
No 24
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=27.99 E-value=4e+02 Score=30.29 Aligned_cols=19 Identities=37% Similarity=0.777 Sum_probs=11.9
Q ss_pred eecCChhHHHHHHhhhhHH
Q 005261 572 VDVLTPKVFIGLIVGAMLP 590 (705)
Q Consensus 572 ~~l~~p~Vl~GlliG~~lp 590 (705)
--+..|..++|..+|..+=
T Consensus 319 GG~f~P~l~iGa~~G~~~g 337 (418)
T PRK01610 319 GGVFTPTLFVGLAIGMLYG 337 (418)
T ss_pred chhhHHHHHHHHHHHHHHH
Confidence 3456677777777666553
No 25
>TIGR00245 conserved hypothetical protein TIGR00245.
Probab=27.89 E-value=67 Score=34.23 Aligned_cols=70 Identities=20% Similarity=0.347 Sum_probs=46.6
Q ss_pred cCChhHH---HHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchh
Q 005261 574 VLTPKVF---IGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPG 650 (705)
Q Consensus 574 l~~p~Vl---~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pg 650 (705)
..+|.-+ .|.++| =+|++++-+..+.-+|+|+|=+|+...+.=-+.| ++.++-..|.|+|.-+.|.
T Consensus 114 ~~~p~y~IPl~GMiiG---------NsM~a~sLa~~rl~~~l~~~~~~ie~~LaLGat~--~~A~~~~~r~Ai~aaliP~ 182 (248)
T TIGR00245 114 KFEPIYVIPLMGMVIG---------NTMNTISLALNRLISMVKSERDEIQGYLSLGATP--KQAIAPFIRNAIKASLIPT 182 (248)
T ss_pred CCCchHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCH--HHHHHHHHHHHHHHHhhch
Confidence 3455543 466665 4789999999999999999977765554433332 4555556677777777776
Q ss_pred hHHH
Q 005261 651 ALVM 654 (705)
Q Consensus 651 ll~v 654 (705)
+=..
T Consensus 183 insm 186 (248)
T TIGR00245 183 VNST 186 (248)
T ss_pred HHhc
Confidence 5443
No 26
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=27.19 E-value=3.5e+02 Score=30.95 Aligned_cols=115 Identities=14% Similarity=0.135 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHhh--ccccccccCCcccC-CCc---cCCcchhhhhhHHHHH
Q 005261 76 IKCAEIQSAISEGATSFLFTEYQYVGVFMVAFAILIFLFLG--SVEGFSTKSQACTY-DPF---KMCKPALATAAFSTVS 149 (705)
Q Consensus 76 ~~m~~Is~~I~eGA~afL~~qyk~i~~~~~v~~~~l~~~~~--~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~ai~ 149 (705)
+-.|.+--.+--.---|...+||=+-...+++.+++..+.. .+..+. ..-| -+| .-..+..+..+.+...
T Consensus 218 ~~~k~~~~~~~il~~v~~ln~yrGvp~~vlv~~vl~~~~~fvt~rT~fG----R~VyAiGGN~eAA~LSGInv~r~t~~v 293 (394)
T COG4214 218 FVLKLLVIAAIILGLVYVLNSYRGVPNPVLVLLVLLIVFTFVTTRTVFG----RRVYAIGGNPEAARLSGINVERVTLLV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhhhceee----eEEEEecCCHHHHHhcCCceeehhHHH
Confidence 33344433333344467888998776555555554433211 110000 0000 000 0012222233456677
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhcChhHHHHHhcccchhh
Q 005261 150 FLLGGITSVVSGFLGMKIATFANARTTLEARKGVGKAFIVAFRSGAVM 197 (705)
Q Consensus 150 Fl~Ga~~S~laG~iGM~vAt~aNvRta~aA~~~~~~al~vAfrgGsVm 197 (705)
|.. +..+|..-|+-.+.|-|+-|-.|-...=-++..-||-||+.|
T Consensus 294 F~~---mGvl~AiAgli~taRL~aatp~AG~g~ELdaIAA~fIGGtSl 338 (394)
T COG4214 294 FVI---MGVLAAIAGLILTARLNAATPSAGTGFELDAIAACFIGGTSL 338 (394)
T ss_pred HHH---HHHHHHHHHHHHHHHhhcCCcCCCcchhHHHHHHHHhccccc
Confidence 755 344445556667888887766654443447888888887654
No 27
>PRK08382 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=26.93 E-value=2.1e+02 Score=29.75 Aligned_cols=107 Identities=15% Similarity=0.263 Sum_probs=59.5
Q ss_pred ccCCchHHHHHhhhhhhcCcccccccchhh---HH---HHHHHHHHHHHHHHhhhccceeecCChhHHHHHHhhhhHHHH
Q 005261 519 MAGMSHRIRERTDALDAAGNTTAAIGKGFA---IG---SAALVSLALFGAFVSRAAISTVDVLTPKVFIGLIVGAMLPYW 592 (705)
Q Consensus 519 Ms~l~~~VR~~tD~LDa~GNTTaAi~KGfA---IG---SAaL~aL~Lf~ay~~~~~~~~~~l~~p~Vl~GlliG~~lpfl 592 (705)
|+.+|++.|++...- -+|..-|++- +. +-.+..+.||.-++--.+ .+ .-...++|+++|..++++
T Consensus 1 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~llLf~~WllLsg--~~--s~~~l~lG~i~~~~v~~l 71 (201)
T PRK08382 1 MSRMPFYLRERLEEV-----KERVLYEIYEAQKLPPWERFVLTWLILLAFWVIISG--DL--SPRGLILGALTTLIIASY 71 (201)
T ss_pred CCcchHHHHHHHhhc-----ccccceeecccccCCcchHHHHHHHHHHHHHHHHhC--Cc--CHHHHHHHHHHHHHHHHH
Confidence 788999999987665 2222222211 11 135566677766654322 12 224477888888878777
Q ss_pred HHhHhHH-----------------------------HHHHHHHHHHHHHHHhhccCCCCCCC--CCCCChhHHH
Q 005261 593 FSAMTMK-----------------------------SVGSAALKMVEEVRRQFNTIPGLMEG--TAKPDYATCV 635 (705)
Q Consensus 593 Fsal~m~-----------------------------aVg~aA~~mV~EVRRQFreipGi~eg--~~kPDY~~cV 635 (705)
+.-+..+ -+-+|-.+|...|=+ .+-.||+.+= +-|-|+++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~eivkANi~Va~~VL~-~~i~Pgiv~v~~~l~~~~~~~~ 144 (201)
T PRK08382 72 MRDFLTEDIRRSGHLLWKILYFALIYLPQYLIIMAFRLLESNLKVAKHVIF-MDINPGIVKIKTDLHSDTGITI 144 (201)
T ss_pred HHhhcccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCcEEEEeccCCChHHHHH
Confidence 6665321 233445555555554 4566777654 3455665543
No 28
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=26.86 E-value=64 Score=30.32 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHH-HHHHHHHH------HhhhhccCCCchhHHH
Q 005261 405 NWQLFLCVAVGL-WAGLIIGF------VTEYYTSNAYSPVQDV 440 (705)
Q Consensus 405 ~~~~~~~~~~Gl-~~g~lI~~------iTeYyTS~~~~PVr~I 440 (705)
.|.+..+++++. +.++||.+ +-+|+.||+|+|.+|-
T Consensus 16 sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL~e~ 58 (102)
T PF15176_consen 16 SWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRLPET 58 (102)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccCCcc
Confidence 365555555544 47777765 5689999999999876
No 29
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=26.73 E-value=81 Score=33.64 Aligned_cols=70 Identities=23% Similarity=0.334 Sum_probs=47.4
Q ss_pred cCChhHH---HHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchh
Q 005261 574 VLTPKVF---IGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPG 650 (705)
Q Consensus 574 l~~p~Vl---~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pg 650 (705)
..||.-+ .|.++| =+|++++.+..+.-+|+|++=+|+...+.=-+. +++..+-..|.|+|+-+.|.
T Consensus 120 ~~~~r~~IPi~GMiiG---------Nsm~a~slal~r~~~~l~~~~~~ie~~LalGat--~~eA~~~~~r~ai~~al~P~ 188 (250)
T PF03649_consen 120 WFDPRYLIPIAGMIIG---------NSMNAVSLALERFYSELRERRDEIEALLALGAT--PREAVRPFIRRAIRAALIPT 188 (250)
T ss_pred CCChhHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHhHhH
Confidence 4455544 466665 467999999999999999997776555543333 34556666778888777776
Q ss_pred hHHH
Q 005261 651 ALVM 654 (705)
Q Consensus 651 ll~v 654 (705)
+=..
T Consensus 189 i~~m 192 (250)
T PF03649_consen 189 INSM 192 (250)
T ss_pred HHhh
Confidence 5443
No 30
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=25.23 E-value=72 Score=27.79 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHH
Q 005261 605 ALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKIST 639 (705)
Q Consensus 605 A~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT 639 (705)
..+..||+|+-+||..-++.=..|||.+.-..++-
T Consensus 4 ~~~~~e~~~~~lke~~rvl~~arKP~~eEy~~~aK 38 (65)
T COG2443 4 MMDKPEELREFLKEYRRVLKVARKPDWEEYSKIAK 38 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45667777777777666666678999888777643
No 31
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=24.64 E-value=4.4e+02 Score=27.13 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhee
Q 005261 482 AMYGIAVAALGMLSTIATGLAI 503 (705)
Q Consensus 482 GlyGialAa~GMLst~~~~la~ 503 (705)
.+-|..++-+|+-++.|..++=
T Consensus 111 nl~Gmllt~lG~~a~vG~L~ak 132 (183)
T PF12263_consen 111 NLVGMLLTLLGAQATVGTLVAK 132 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999877653
No 32
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=24.42 E-value=3.9e+02 Score=32.67 Aligned_cols=141 Identities=23% Similarity=0.343 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhc---------------ChhHHHHHhcccchhhHHHHHHHHHHH
Q 005261 144 AFSTVSFLLGGITSVVSGFLGMKIATFANARTTLEARK---------------GVGKAFIVAFRSGAVMGFLLAANGLLV 208 (705)
Q Consensus 144 ~~~ai~Fl~Ga~~S~laG~iGM~vAt~aNvRta~aA~~---------------~~~~al~vAfrgGsVmG~~v~glgLl~ 208 (705)
+.+-+..++|+..-.+-.-+-|+.-.|+--+..++-|| .+.+..+++-| .+.-.|.+.+ ++.
T Consensus 484 p~vl~GlliG~~lpflFs~l~m~AVg~aA~~mV~EVRrQFre~pGi~eg~~kPdY~~cV~I~T~-~AlkeMi~P~--ll~ 560 (666)
T PRK00733 484 PYVLVGLLIGGMLPFLFSALAMTAVGRAAGAMVEEVRRQFREIPGIMEGTAKPDYARCVDISTK-AALKEMILPG--LLA 560 (666)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCChHHHHHHHHH-HHHHhhhhHH--HHH
Confidence 45777888888888877777777777776666666553 24445544433 3333343322 221
Q ss_pred HHH---HHHHHhhhcCCCcchhhHhHhhhcchhhHHHHHHHhhcccchhhhhhccccccccccCCCC---CCCCCccchh
Q 005261 209 LFI---AINLFKLYYGDDWSGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPE---DDPRNPAVIA 282 (705)
Q Consensus 209 l~~---~~~~~~~~~~~~~~~~~~~l~gf~~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPE---DDPRNPavIA 282 (705)
+.. .-+++. .+ -+.-.+.|.-.-+-+.|+|.--+||-+-+|-.. +|.|-.+ .|.+..+|+.
T Consensus 561 v~~Pi~vG~~lG----~~--al~G~L~G~~vsG~~lAi~m~NaGGAWDNAKKy-------IE~g~~gGKgS~aHkAaVvG 627 (666)
T PRK00733 561 VLAPIAVGFLLG----PE--ALGGLLAGAIVTGLLLAIFMANAGGAWDNAKKY-------IEDGNHGGKGSEAHKAAVVG 627 (666)
T ss_pred HHHHHHHHHHhh----HH--HHHHHHHHHHHHHHHHHHHHcccchhHHHHHHH-------HhcCCCCCCCcHHHhccccC
Confidence 111 111221 11 112233444444557899999999999887654 6665543 4557789999
Q ss_pred cccccccccccccchhhh
Q 005261 283 DNVGDNVGDIAGMGSDLF 300 (705)
Q Consensus 283 DnVGDNVGD~AGmgADLF 300 (705)
|-|||=-=|-+|..-+.-
T Consensus 628 DTVGDPfKDTaGPslnil 645 (666)
T PRK00733 628 DTVGDPFKDTAGPALNPL 645 (666)
T ss_pred CCCCCCccccccchhhHH
Confidence 999999999999987743
No 33
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=23.75 E-value=32 Score=28.90 Aligned_cols=7 Identities=71% Similarity=1.426 Sum_probs=5.7
Q ss_pred CCCCCcc
Q 005261 273 DDPRNPA 279 (705)
Q Consensus 273 DDPRNPa 279 (705)
.|||||-
T Consensus 39 NDPRNP~ 45 (54)
T PF04911_consen 39 NDPRNPR 45 (54)
T ss_pred cCCCChh
Confidence 6999984
No 34
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=23.68 E-value=4.1e+02 Score=32.69 Aligned_cols=142 Identities=17% Similarity=0.293 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhcC---------------hhHHHHHhcccchhhHHHHHHHHHHHHH
Q 005261 146 STVSFLLGGITSVVSGFLGMKIATFANARTTLEARKG---------------VGKAFIVAFRSGAVMGFLLAANGLLVLF 210 (705)
Q Consensus 146 ~ai~Fl~Ga~~S~laG~iGM~vAt~aNvRta~aA~~~---------------~~~al~vAfrgGsVmG~~v~glgLl~l~ 210 (705)
+-+..++|+..-.+=.=+.|+.=.|+--|..++-||- +++..+++-| .+.-.|.+.++=.+..-
T Consensus 511 vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGi~eG~~kPdY~~cV~I~T~-aAlkeMi~Pgll~i~~P 589 (697)
T TIGR01104 511 VFIGLFVGAMLPYWFSSMTMKSVGRAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTD-ASIKEMIPPGLLVMLTP 589 (697)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCCcHHHHHHHHH-HHHHhhhhhhHHHHHHH
Confidence 4455566766666655556666666666666655432 3344555544 34455554432222111
Q ss_pred HHHHHHhhhcCCCcchhhHhHhhhcchhhHHHHHHHhhcccchhhhhhccccccccccC--------CCCCCCCCccchh
Q 005261 211 IAINLFKLYYGDDWSGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERN--------IPEDDPRNPAVIA 282 (705)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~gf~~GaS~iALFaRvGGGIyTKAADVGADLVGKVEag--------IPEDDPRNPavIA 282 (705)
++.-++ ++.+ -+--.+.|.-.-+-+.|+|.--+||-+-+|=.. +|.| -.-.|.+..+|+.
T Consensus 590 i~vG~~---~G~~--al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKy-------IE~G~~~~~~~ggKGS~aHkAaVvG 657 (697)
T TIGR01104 590 LIVGFL---FGVE--TLSGVLAGVLVSGVQIAISASNTGGAWDNAKKY-------IEAGSEHARSLGPKGSEAHKAAVIG 657 (697)
T ss_pred HHHHHh---ccHH--HHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHH-------HhcCccccccCCCCCcHHhhccccC
Confidence 111110 1110 011233333334457899999999999887654 6665 3455678899999
Q ss_pred cccccccccccccchhhh
Q 005261 283 DNVGDNVGDIAGMGSDLF 300 (705)
Q Consensus 283 DnVGDNVGD~AGmgADLF 300 (705)
|-|||=-=|-+|..-+.-
T Consensus 658 DTVGDPfKDTaGPslNil 675 (697)
T TIGR01104 658 DTVGDPLKDTSGPSLNIL 675 (697)
T ss_pred CCCCCCccccccchHhHH
Confidence 999999999999987743
No 35
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=23.19 E-value=2.3e+02 Score=31.04 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=43.0
Q ss_pred HHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHHHhhhhhhH---HHHhhHHHHHHHHHH
Q 005261 608 MVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETL---SGVLAGSLVSGVQIA 684 (705)
Q Consensus 608 mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgll~vl~PlivG~l~G~~al---~GlL~G~~vsG~~lA 684 (705)
++|.+|++.|+. .+.++++.++.+.+..+|..+.=++..++ +++.=+++|.+.+ +=-+++.+++|.+.+
T Consensus 199 i~drire~~~~~-------~~~~~~e~i~~ai~~~lrr~l~TslTt~l-~llpL~l~G~~~~~~fA~~li~Gli~gt~ss 270 (297)
T PRK13021 199 IADRIRELLIAK-------PKLAIQEINNQAIVATFSRTMVTSGTTLM-TVGALWIMGGGPLEGFSIAMFIGILTGTFSS 270 (297)
T ss_pred EeeHHHHHHHhc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 557788776532 23458888888777777776655443332 2222223455533 334557777777777
Q ss_pred HHhhc
Q 005261 685 ISASN 689 (705)
Q Consensus 685 i~m~N 689 (705)
++.+.
T Consensus 271 lfva~ 275 (297)
T PRK13021 271 ISVGT 275 (297)
T ss_pred HHHHH
Confidence 77654
No 36
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=23.13 E-value=1.3e+02 Score=26.13 Aligned_cols=32 Identities=25% Similarity=0.592 Sum_probs=23.2
Q ss_pred HHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 005261 579 VFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLME 624 (705)
Q Consensus 579 Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~e 624 (705)
+++++++|+..-|+++- ...++|++|+|-|=|
T Consensus 3 iilali~G~~~Gff~ar--------------~~~~k~l~~NPpine 34 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR--------------KYMEKQLKENPPINE 34 (64)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHCCCCCH
Confidence 56778888877777653 445789999987743
No 37
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=22.91 E-value=79 Score=34.64 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC
Q 005261 597 TMKSVGSAALKMVEEVRRQFNTI 619 (705)
Q Consensus 597 ~m~aVg~aA~~mV~EVRRQFrei 619 (705)
.|.+|.+++..-++|+++|||..
T Consensus 22 ~m~~i~~G~~~ai~ECq~QF~~~ 44 (310)
T PF00110_consen 22 LMPSIAEGAKMAIEECQHQFRNR 44 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999999999975
No 38
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.64 E-value=1.1e+02 Score=30.15 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCch
Q 005261 407 QLFLCVAVGLWAGLIIGFVTEYYTSNAYSP 436 (705)
Q Consensus 407 ~~~~~~~~Gl~~g~lI~~iTeYyTS~~~~P 436 (705)
-.|....+|+++|++||++---+|-..+|.
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 456788999999999999999999887776
No 39
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=22.57 E-value=2.7e+02 Score=24.45 Aligned_cols=40 Identities=10% Similarity=0.307 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHhHHH----HHHHHhHHHHHHHHHHHHHHHHH
Q 005261 75 VIKCAEIQSAISEGATS----FLFTEYQYVGVFMVAFAILIFLF 114 (705)
Q Consensus 75 ~~~m~~Is~~I~eGA~a----fL~~qyk~i~~~~~v~~~~l~~~ 114 (705)
+++|++-|+..+..|.. +..+.||+..+++.++.+++++.
T Consensus 40 t~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i 83 (89)
T PF00957_consen 40 TEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILII 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHH
Confidence 55555555555555543 44567777766666666555443
No 40
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=21.64 E-value=1.2e+03 Score=26.41 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccC
Q 005261 407 QLFLCVAVGLWAGLIIGFVTEYYTSN 432 (705)
Q Consensus 407 ~~~~~~~~Gl~~g~lI~~iTeYyTS~ 432 (705)
.+..+...|+..-.+-....++|.+.
T Consensus 323 ~~l~~y~~~l~~~~l~~ll~r~fya~ 348 (451)
T PF03023_consen 323 SALRIYALGLPFYALNDLLSRVFYAL 348 (451)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 44556667777766777777777654
No 41
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=21.53 E-value=5.9e+02 Score=27.58 Aligned_cols=72 Identities=19% Similarity=0.369 Sum_probs=37.5
Q ss_pred HHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHHH--hhHHHHHhhhhhh---HHHHhhHHHHHHHH
Q 005261 608 MVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVML--TPLIVGIFFGVET---LSGVLAGSLVSGVQ 682 (705)
Q Consensus 608 mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgll~vl--~PlivG~l~G~~a---l~GlL~G~~vsG~~ 682 (705)
+.|.+|++.|+.| +.|++++++-+.+..++..+.=.+..++ .|+. ++|.+. .+=.+++.+++|.+
T Consensus 200 v~drire~~~~~~-------~~~~~~av~~a~~~~~~~~l~TslTTl~~~l~L~---~~g~~~i~~fa~~l~~Gli~~~~ 269 (289)
T PRK13022 200 VFDRIRENFRKIR-------RKTFAEIINLSINQTLSRTIITSLTTLLVVLALY---LFGGGTLHDFALALLIGIIVGTY 269 (289)
T ss_pred EeeHHHHHHhhcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchhHHHHHHHHHHHHHHHHH
Confidence 5688888876543 2468888877666555554443333322 2222 223332 22234455555655
Q ss_pred HHHHhhc
Q 005261 683 IAISASN 689 (705)
Q Consensus 683 lAi~m~N 689 (705)
.+++.+-
T Consensus 270 ~sl~i~p 276 (289)
T PRK13022 270 SSIFVAS 276 (289)
T ss_pred HHHHHHH
Confidence 5555443
No 42
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=21.10 E-value=6.9e+02 Score=30.10 Aligned_cols=90 Identities=21% Similarity=0.267 Sum_probs=46.8
Q ss_pred cccccccCcchhhhccCCchHH-HHHhhhhhhcCcccccccch-hhHHHHHHHHHHHHHHHHhhhccceeecCChhHHHH
Q 005261 505 AYGPISDNAGGIAEMAGMSHRI-RERTDALDAAGNTTAAIGKG-FAIGSAALVSLALFGAFVSRAAISTVDVLTPKVFIG 582 (705)
Q Consensus 505 ayGPIaDNAgGIaEMs~l~~~V-R~~tD~LDa~GNTTaAi~KG-fAIGSAaL~aL~Lf~ay~~~~~~~~~~l~~p~Vl~G 582 (705)
+..||.|+ +-| .|-++. .-+|+.|+..|= -+...|= =.|=.+..+++++.++- +.+|
T Consensus 369 am~PiMe~---Vvk--PLme~is~~iT~~L~~~GV-dke~Ae~iGsI~gaI~aAi~mvA~~---------------v~~~ 427 (593)
T PRK15374 369 ALNPIMEH---VLK--PLMELIGKAITKALEGLGV-DKKTAEMAGSIVGAIVAAIAMVAVI---------------VVVA 427 (593)
T ss_pred HHHHHHHH---HHH--HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH
Confidence 56677765 222 111222 346777888772 2222221 12334556666655542 3344
Q ss_pred HHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhh
Q 005261 583 LIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQF 616 (705)
Q Consensus 583 lliG~~lpflFsal~m~aVg~aA~~mV~EVRRQF 616 (705)
...++.--.+++. .++.+|+.-.++++|.-||+
T Consensus 428 ~v~k~aa~Kl~~~-l~k~ig~~i~~~~~~~lk~~ 460 (593)
T PRK15374 428 VVGKGAAAKLGNA-LSKMMGETIKKLVPNVLKQL 460 (593)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444 45788888888888887765
No 43
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=20.89 E-value=9.8e+02 Score=25.06 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhc
Q 005261 405 NWQLFLCVAVGLWAGLIIGFVTEYYT 430 (705)
Q Consensus 405 ~~~~~~~~~~Gl~~g~lI~~iTeYyT 430 (705)
.|+...-.++|.++|.++|++..++.
T Consensus 8 ~~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 8 ILRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677788888888888877775
No 44
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=20.83 E-value=3e+02 Score=30.46 Aligned_cols=73 Identities=14% Similarity=0.270 Sum_probs=46.2
Q ss_pred HHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHHHhhhhhhHHHH---hhHHHHHHHHHHHH
Q 005261 610 EEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGV---LAGSLVSGVQIAIS 686 (705)
Q Consensus 610 ~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgll~vl~PlivG~l~G~~al~Gl---L~G~~vsG~~lAi~ 686 (705)
+-||+++|.. +.+|.+ .++|.+-..-+-+.+.-.+..++ |++.-++||.+.+-+| |+-.+++|.+-.+|
T Consensus 209 DRIREn~r~~------~~~~~~-~iin~si~qTlsRti~Ts~ttll-~~~~l~~fgg~~l~~fa~~llvGii~gtySSif 280 (305)
T COG0341 209 DRIRENLRKY------RRETLR-EIINTSINQTLTRTINTSVTTLL-VVVALLLFGGGSLKDFALALLVGIIAGTYSSIF 280 (305)
T ss_pred hHHHHHHhhh------ccCCHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCchHHHHHHHHHHHHHHHHHHhHHH
Confidence 4566666532 344545 88888777777777776666654 4566666776654433 45556778888888
Q ss_pred hhcc
Q 005261 687 ASNT 690 (705)
Q Consensus 687 m~Na 690 (705)
++..
T Consensus 281 iA~p 284 (305)
T COG0341 281 IAAP 284 (305)
T ss_pred HHHH
Confidence 7643
No 45
>PRK06696 uridine kinase; Validated
Probab=20.64 E-value=38 Score=34.43 Aligned_cols=17 Identities=47% Similarity=0.819 Sum_probs=14.4
Q ss_pred cccccccccCCCCCCCCCccchh
Q 005261 260 ADLVGKVERNIPEDDPRNPAVIA 282 (705)
Q Consensus 260 ADLVGKVEagIPEDDPRNPavIA 282 (705)
||+| |+.+||+||++++
T Consensus 203 ADiv------i~n~~~~~p~~~~ 219 (223)
T PRK06696 203 ADVV------IDNSDPANPRLLF 219 (223)
T ss_pred CeEE------EECCCCCCCeeec
Confidence 5666 8999999999875
No 46
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.27 E-value=1.1e+02 Score=29.34 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCch
Q 005261 412 VAVGLWAGLIIGFVTEYYTSNAYSP 436 (705)
Q Consensus 412 ~~~Gl~~g~lI~~iTeYyTS~~~~P 436 (705)
+++|+++|++||++.-.+++.+.+-
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~~ 26 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQK 26 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhh
Confidence 4678888888888888888766443
Done!