Query 005261
Match_columns 705
No_of_seqs 138 out of 741
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 20:14:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a01_A Proton pyrophosphatase; 100.0 2E-234 5E-239 1942.5 54.9 700 1-704 1-700 (766)
2 4av3_A K(+)-stimulated pyropho 100.0 6E-221 2E-225 1850.9 49.4 627 11-704 12-678 (735)
3 2dae_A KIAA0733 protein; mitog 43.8 20 0.0007 30.5 3.8 39 606-644 11-53 (75)
4 4f0a_B Protein WNT-8, XWNT-8; 28.8 33 0.0011 36.2 3.4 23 597-619 18-40 (316)
5 4av3_A K(+)-stimulated pyropho 27.2 2.8E+02 0.0096 32.6 10.9 78 406-506 83-160 (735)
6 3fss_A Histone chaperone RTT10 18.9 83 0.0028 32.2 3.9 32 610-643 99-130 (237)
7 3hd7_A Vesicle-associated memb 18.4 2.2E+02 0.0075 24.5 6.0 39 75-113 35-84 (91)
8 2o1k_A NS28, non-structural gl 16.8 51 0.0018 26.3 1.4 17 603-619 3-19 (52)
9 2keb_A DNA polymerase subunit 16.5 19 0.00064 32.4 -1.3 50 586-644 11-60 (101)
10 2g04_A Probable fatty-acid-COA 16.5 42 0.0014 35.8 1.1 19 255-276 28-46 (359)
No 1
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=100.00 E-value=1.5e-234 Score=1942.52 Aligned_cols=700 Identities=91% Similarity=1.369 Sum_probs=637.5
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCchhhhhhcCCCCccccHHHHH
Q 005261 1 MGAAILPDLGAEILIPVCAVIGIAFALVQWVLVSNIKLSPARDASGNSPGAGGGKNGCTDYLIEEEEGLNDHNVVIKCAE 80 (705)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~m~~ 80 (705)
|||++++|..+..++++++++|++||+++|++|+|+|+++++. ++.+++++||++|++.++++|.+++++.+||||
T Consensus 1 ~~~~~~~~~~~~~~i~~~~~~Gi~fa~~~~~~vs~v~~~~~~~----~~~~~~~~~g~~~~l~~~~~g~~~~~~~~~m~e 76 (766)
T 4a01_A 1 MGAAILPDLGTEILIPVCAVIGIAFALFQWLLVSKVKLSAVRD----ASPNAAAKNGYNDYLIEEEEGINDHNVVVKCAE 76 (766)
T ss_dssp -CCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCC-----------------------------CCHHHHHHHH
T ss_pred CCcchhhhhhhhhHhHHHHHHHHHHHHHHHHheEeEEecCCcc----ccccccccCCcccccchhhcccchHHHHHHHHH
Confidence 8999999999999999999999999999999999999875421 122445688888888888888788888899999
Q ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccccccccCCcccCCCccCCcchhhhhhHHHHHHHHHHHHHHHh
Q 005261 81 IQSAISEGATSFLFTEYQYVGVFMVAFAILIFLFLGSVEGFSTKSQACTYDPFKMCKPALATAAFSTVSFLLGGITSVVS 160 (705)
Q Consensus 81 Is~~I~eGA~afL~~qyk~i~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~Fl~Ga~~S~la 160 (705)
|+++|||||++||+||||++++|+++++++|++++.+...+++++|++.+++...|++.+..+++++++|++|+++|.++
T Consensus 77 Ia~aI~eGA~afL~rqYk~i~~~~vv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~~a 156 (766)
T 4a01_A 77 IQNAISEGATSFLFTEYKYVGIFMVAFAILIFLFLGSVEGFSTSPQACSYDKTKTCKPALATAIFSTVSFLLGGVTSLVS 156 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCCCEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998776554555666777777777778888888899999999999999999
Q ss_pred hhhhhhhhhhhhHhhHHHHhcChhHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhHhHhhhcchhhH
Q 005261 161 GFLGMKIATFANARTTLEARKGVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWSGLFEAITGYGLGGSS 240 (705)
Q Consensus 161 G~iGM~vAt~aNvRta~aA~~~~~~al~vAfrgGsVmG~~v~glgLl~l~~~~~~~~~~~~~~~~~~~~~l~gf~~GaS~ 240 (705)
||+|||+|||+|+|||+|||+++++||++|||+|+||||+|+++||++++++|++|..++++++.+.++++.||+||+|+
T Consensus 157 G~iGM~vat~ANvRtA~AA~~gl~~al~vAfr~GaVmGl~vvglgLlgl~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~ 236 (766)
T 4a01_A 157 GFLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKIYYGDDWGGLFEAITGYGLGGSS 236 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHhhcchhHHH
Confidence 99999999999999999999999999999999999999999999999999999888766666666678999999999999
Q ss_pred HHHHHHhhcccchhhhhhccccccccccCCCCCCCCCccchhcccccccccccccchhhhhhhHHHHHHHHHHHHHhhcc
Q 005261 241 MALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFG 320 (705)
Q Consensus 241 iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamilg~~~~~~ 320 (705)
+|||+|+||||||||||||||||||||+|||||||||||||||||||||||||||+|||||||++++++||+|++...++
T Consensus 237 iAlFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~t~iaamvlg~~~~~~ 316 (766)
T 4a01_A 237 MALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFG 316 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCTTCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHhccchhhhhhhhccccccccccCCCCcCCCCcchhhhhhccccccccccchhHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999754222
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcc
Q 005261 321 INHELTAMLYPLLISSAGIIVCLITTLFATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQ 400 (705)
Q Consensus 321 ~~~~~~~v~~Pl~i~a~gi~~Siig~~~~~~~~~~~~~~~~~~aL~~~~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~ 400 (705)
.+..+..++|||+++++||++|++|++++|++++.++++++|++||+++|+|++++++++|++++|++|+++..+..++.
T Consensus 317 ~~~~~~~v~~PL~i~a~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~v~~~~~~~~~l~~~~~~~~~~~~ 396 (766)
T 4a01_A 317 LNHELTAMLYPLIVSSVGILVCLLTTLFATDFFEIKAVKEIEPALKKQLVISTVLMTIGVAVVSFVALPTSFTIFNFGVQ 396 (766)
T ss_dssp HTTCHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSEEEEEETTEE
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhheeEeeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Confidence 22345679999999999999999999999877778888899999999999999999999999999999987654433333
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCcchHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 005261 401 KVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSF 480 (705)
Q Consensus 401 ~~~~~~~~~~~~~~Gl~~g~lI~~iTeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~G~~St~~pvl~I~~ai~~s~~l 480 (705)
...++|++|+|+++|+++|++|+++||||||++|||||+||++|+||||||||+||++||+||++|+++|++++++||++
T Consensus 397 ~~~~~~~~f~~~~~Gl~~g~lI~~iTeYyTs~~~~PV~~IA~aS~TG~ATnII~GlavGm~St~~Pvl~i~~ai~~sy~l 476 (766)
T 4a01_A 397 KDVKSWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAISIFVSFTF 476 (766)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHGGGCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCcCchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhheeccccccccCcchhhhccCCchHHHHHhhhhhhcCcccccccchhhHHHHHHHHHHHH
Q 005261 481 AAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALF 560 (705)
Q Consensus 481 ~GlyGialAa~GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTaAi~KGfAIGSAaL~aL~Lf 560 (705)
+|+||+++||+|||||++++|++|+||||+||||||||||+||||||||||+||++||||||+|||||||||+|+||+||
T Consensus 477 ~glyGiAlAa~GMLst~g~~lAvDayGPIaDNAGGIAEMs~l~~eVR~~TD~LDavGNTTaAi~KGfAIGSAaL~AlaLf 556 (766)
T 4a01_A 477 AAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALF 556 (766)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhheeeeeccCCcccCcccHHHHccCcHHHHHHHHhhhhccCchhhhccchhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHH
Q 005261 561 GAFVSRAAISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTD 640 (705)
Q Consensus 561 ~ay~~~~~~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~ 640 (705)
++|+++.++..+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||||||||||+||||+||||||||
T Consensus 557 ~ay~~~~~~~~~~l~~P~Vl~GlliG~mlpflFsa~tm~AVg~AA~~mV~EVRRQFreipGImeg~~kPDY~rcV~I~T~ 636 (766)
T 4a01_A 557 GAFVSRASITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTD 636 (766)
T ss_dssp HHHHHHTTCSCCBSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHhccceeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCChHHHHHHHHH
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcchhhHHHHhhHHHHHhhhhhhHHHHhhHHHHHHHHHHHHhhcccccccchhhhhhhc
Q 005261 641 ASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEVC 704 (705)
Q Consensus 641 aAlkeMi~Pgll~vl~PlivG~l~G~~al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKyIE~~ 704 (705)
+||||||.|+++++++|+++|++||+++++|+|+|++++|++||+||+|+||||||||||||++
T Consensus 637 aAlkeMi~Pgllav~~Pi~vG~~lG~~al~G~L~G~~vsGv~~Ai~maNaGGAWDNAKKyIE~G 700 (766)
T 4a01_A 637 ASIKEMIPPGALVMLTPLVVGILFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAG 700 (766)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHhHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999999985
No 2
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=100.00 E-value=6.3e-221 Score=1850.90 Aligned_cols=627 Identities=41% Similarity=0.693 Sum_probs=546.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCchhhhhhcCCCCccccHHHHHHHHHHHHhHH
Q 005261 11 AEILIPVCAVIGIAFALVQWVLVSNIKLSPARDASGNSPGAGGGKNGCTDYLIEEEEGLNDHNVVIKCAEIQSAISEGAT 90 (705)
Q Consensus 11 ~~~~~~~~~~~~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~m~~Is~~I~eGA~ 90 (705)
...+.+++++++|+|++++++|| +|||+| +||||||+++|||||+
T Consensus 12 v~~l~~~~~i~~l~~a~~~~~~v-----------------------------~~~~~G------~~~M~eIa~~I~eGA~ 56 (735)
T 4av3_A 12 VAALFFLIPLVALGFAAANFAAV-----------------------------VRKPEG------TERMKEISSYIRSGAD 56 (735)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHH-----------------------------HTSCC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------------------HcCCCC------CHHHHHHHHHHHHHHH
Confidence 34555677899999999999987 478899 9999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhccccccccCCcccCCCccCCcchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 005261 91 SFLFTEYQYVGVFMVAFAILIFLFLGSVEGFSTKSQACTYDPFKMCKPALATAAFSTVSFLLGGITSVVSGFLGMKIATF 170 (705)
Q Consensus 91 afL~~qyk~i~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~Fl~Ga~~S~laG~iGM~vAt~ 170 (705)
+||+||||++++|+++++++++++. +|+++++|++|++||.+|||+|||+|||
T Consensus 57 afL~rqyk~i~~~~vv~~~ll~~~~---------------------------~~~~ai~Fl~Ga~~S~~aGyiGM~vAt~ 109 (735)
T 4av3_A 57 SFLAHETKAIFKVAIVIAILLMIFT---------------------------TWQTGVAFLLGAVMSASAGIVGMKMATR 109 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887653 3689999999999999999999999999
Q ss_pred hhHhhHHHHhc--ChhHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcCC-------------CcchhhHhHhhhc
Q 005261 171 ANARTTLEARK--GVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGD-------------DWSGLFEAITGYG 235 (705)
Q Consensus 171 aNvRta~aA~~--~~~~al~vAfrgGsVmG~~v~glgLl~l~~~~~~~~~~~~~-------------~~~~~~~~l~gf~ 235 (705)
+|+|||+|||+ ++++||++|||||+||||+|+||+||++.++|++|..++++ +..+.++++.||+
T Consensus 110 ANvRTA~AA~~s~~l~~aL~vAFrgGaVmGl~vvgl~Llgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gfg 189 (735)
T 4av3_A 110 ANVRVAEAARTTKKIGPALKVAYQGGSVMGLSVGGFALLGLVLVYLIFGKWMGQVDNLNIYTNWLGINFVPFAMTVSGYA 189 (735)
T ss_dssp HHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHCSCEECTTSCEECHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCccHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccchhhhHHHhhhc
Confidence 99999999984 68999999999999999999999999999999988643221 1234567899999
Q ss_pred chhhHHHHHHHhhcccchhhhhhccccccccccCCCCCCCCCccchhcccccccccccccchhhhhhhHHHHHHHHHHHH
Q 005261 236 LGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVAS 315 (705)
Q Consensus 236 ~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamilg~ 315 (705)
||+|++|||+|||||||||+||||||||||||+|||||||||||||||||||||||||||||||||||+++++++|+|++
T Consensus 190 ~GaS~iALFaRvGGGIyTKaADVGADLVGKVEagIPEDDPRNPAvIADNVGDNVGDvAGMgADLFESY~~sivAamvL~~ 269 (735)
T 4av3_A 190 LGCSIIAMFDRVGGGVYTKAADMAADLVGKTELNLPEDDPRNPATIADNVGDNVGDVAGLGADLLESFVGAIVSSIILAS 269 (735)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHTTSCC-----------CCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCcceeccccccchhhhhhhcCCCCCCCCCCchhhhhcccccccccccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhc------ccc--------cccchhhHHHHHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHH
Q 005261 316 ISSF------GIN--------HELTAMLYPLLISSAGIIVCLITTLFATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIA 381 (705)
Q Consensus 316 ~~~~------~~~--------~~~~~v~~Pl~i~a~gi~~Siig~~~~~~~~~~~~~~~~~~aL~~~~~~s~~l~~i~~~ 381 (705)
.... +.+ .....++||++++++|+++|++|++++|. .+++++++++|++++|.+++++++..+
T Consensus 270 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Pl~i~~~gii~SiiG~~~v~~---~~~~~~~~~~l~~~~~~s~~~s~i~~~ 346 (735)
T 4av3_A 270 YMFPIYVQKIGENLVHQVPKETIQALISYPIFFALVGLGCSMLGILYVIV---KKPSDNPQRELNISLWTSALLTVVLTA 346 (735)
T ss_dssp HHHHHTEEEETTEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhheeee---cccccchhHHHhhhHHhhHHHHHHHHH
Confidence 6421 100 01224789999999999999999998752 334567899999999999999999999
Q ss_pred HHHHHhcCccccccccCccccchhhHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCcchHHHHHhhhhhh
Q 005261 382 IVSWIALPSSFTIFNFGSQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYK 461 (705)
Q Consensus 382 ~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~Gl~~g~lI~~iTeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~G~~ 461 (705)
+++++++|........ .....+|++|+|+++|+++|++|+++||||||++|||||+|||+|+||||||||+||++||+
T Consensus 347 ~~~~~~l~~~~~~~~~--~~~~~~~~~f~~~~iGlv~g~lI~~iTEYYTs~~~~PVr~IA~aS~TG~ATnII~GLavGm~ 424 (735)
T 4av3_A 347 FLTYFYLKDLQGLDVL--GFRFGAISPWFSAIIGIFSGILIGFWAEYYTSYRYKPTQFLGKSSIEGTGMVISNGLSLGMK 424 (735)
T ss_dssp HHHHHHHTTCSSHHHH--TCTTGGGHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcccc--cccccchHHHHHHHHHHHHHHHHHHheeeecCCCCchHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 9999998864221111 12345789999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhheeccccccccCcchhhhccCCchHHHHHhhhhhhcCcccc
Q 005261 462 SVIIPIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTA 541 (705)
Q Consensus 462 St~~pvl~I~~ai~~s~~l~GlyGialAa~GMLst~~~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDa~GNTTa 541 (705)
||++|+++|+++|+.||+++|+||+++||+|||||++++|++|+||||+||||||||||+||||||||||+||++|||||
T Consensus 425 St~~pvl~I~~~I~~s~~~aGlyGiaiAa~GMLst~gi~lAvDayGPIaDNAGGIAEMs~l~~eVR~~TD~LDavGNTTk 504 (735)
T 4av3_A 425 SVFPPTLTLVLGILFADYFAGLYGVAIAALGMLSFVATSVSVDSYGPIADNAGGISEMCELDPEVRKITDHLDAVGNTTA 504 (735)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEeeecccCccCCccchHHHccCChHHHHhhhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhh-----------ccceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHH
Q 005261 542 AIGKGFAIGSAALVSLALFGAFVSRA-----------AISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVE 610 (705)
Q Consensus 542 Ai~KGfAIGSAaL~aL~Lf~ay~~~~-----------~~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~ 610 (705)
|+|||||||||+|+||+||++|+++. ....+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||
T Consensus 505 Ai~KGfAIGSAaL~AlaLfaay~~~~~~~~~~~~~~~~~~~~~l~~P~VlvGlliGgmlpflFsaltm~AVgrAA~~mV~ 584 (735)
T 4av3_A 505 AIGKGFAIGSAIFAALSLFASYMFSQISPSDIGKPPSLVLLLNMLDARVIAGALLGAAITYYFSGYLISAVTKAAMKMVD 584 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSSSCGGGTSCCBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhHhHHHHHHHHHHHHHHHHHhhhhhhccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998532 1235899999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHHHhhhhhhHHHHhhHHHHHHHHHHHHhhcc
Q 005261 611 EVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNT 690 (705)
Q Consensus 611 EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgll~vl~PlivG~l~G~~al~GlL~G~~vsG~~lAi~m~Na 690 (705)
||||||||||||||||+||||+||||||||+||||||+|++++|++|+++|+++|+++++|+|+|.+++|++||+||+|+
T Consensus 585 EVRRQFreipGimeg~~kPdy~~cV~I~T~~AlkeMi~p~~l~v~~P~~vg~~~g~~~l~g~L~g~~v~G~~~Ai~m~n~ 664 (735)
T 4av3_A 585 EIRRQAREIPGLLEGKAKPDYNRCIEITSDNALKQMGYPAFIAILTPLVTGFLLGAEFVGGVLIGTVLSGAMLAILTANS 664 (735)
T ss_dssp C-------------------CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCcccCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhhhc
Q 005261 691 GGAWDNAKKYIEVC 704 (705)
Q Consensus 691 GGAWDNAKKyIE~~ 704 (705)
||||||||||||++
T Consensus 665 GGAWDNAKK~iE~G 678 (735)
T 4av3_A 665 GGAWDNAKKYLEAG 678 (735)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred ccHHhhhHHhhccC
Confidence 99999999999974
No 3
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.85 E-value=20 Score=30.50 Aligned_cols=39 Identities=13% Similarity=0.457 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhccCCCCCC----CCCCCChhHHHHHHHHHHHh
Q 005261 606 LKMVEEVRRQFNTIPGLME----GTAKPDYATCVKISTDASIK 644 (705)
Q Consensus 606 ~~mV~EVRRQFreipGi~e----g~~kPDY~~cV~IsT~aAlk 644 (705)
++|++|+|+.|.|+|-=.- -+..-+-+.|.++-+|-+=|
T Consensus 11 ~qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qES~k 53 (75)
T 2dae_A 11 FQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTR 53 (75)
T ss_dssp HHHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHhccc
Confidence 5799999999999983210 14466778999998887765
No 4
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=28.80 E-value=33 Score=36.20 Aligned_cols=23 Identities=30% Similarity=0.211 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC
Q 005261 597 TMKSVGSAALKMVEEVRRQFNTI 619 (705)
Q Consensus 597 ~m~aVg~aA~~mV~EVRRQFrei 619 (705)
.|.+|+++|..-|+|++.|||..
T Consensus 18 ~~~~v~~Ga~~~i~ECq~QFr~~ 40 (316)
T 4f0a_B 18 YSASVAVGAQNGIEECKYQFAWE 40 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 58899999999999999999964
No 5
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=27.18 E-value=2.8e+02 Score=32.60 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCcchHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005261 406 WQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYG 485 (705)
Q Consensus 406 ~~~~~~~~~Gl~~g~lI~~iTeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~G~~St~~pvl~I~~ai~~s~~l~GlyG 485 (705)
|..-.|.++|-+.+.+-|++-=+= ..+..|| .|++++++...+ =++=+||.-+.+.|
T Consensus 83 ~~~ai~Fl~Ga~~S~~aGyiGM~v--At~ANvR-TA~AA~~s~~l~--------------------~aL~vAFrgGaVmG 139 (735)
T 4av3_A 83 WQTGVAFLLGAVMSASAGIVGMKM--ATRANVR-VAEAARTTKKIG--------------------PALKVAYQGGSVMG 139 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHTTTTCSSH--------------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHhhcCCcc--------------------HHHHhhhccchHHH
Confidence 445567788888777777664432 1223444 466665431111 12234577788899
Q ss_pred HHHHHHHHhhhhhhhheeccc
Q 005261 486 IAVAALGMLSTIATGLAIDAY 506 (705)
Q Consensus 486 ialAa~GMLst~~~~la~Day 506 (705)
..++.+|.|....+.+-...+
T Consensus 140 l~vvgl~Llgl~~~~~~~~~~ 160 (735)
T 4av3_A 140 LSVGGFALLGLVLVYLIFGKW 160 (735)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999998877776654433
No 6
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Probab=18.85 E-value=83 Score=32.16 Aligned_cols=32 Identities=28% Similarity=0.592 Sum_probs=26.2
Q ss_pred HHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHH
Q 005261 610 EEVRRQFNTIPGLMEGTAKPDYATCVKISTDASI 643 (705)
Q Consensus 610 ~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAl 643 (705)
|.+..||.+ .|+++.+.+ ||++|+|-..|-+.
T Consensus 99 ~~~~kq~~~-~g~~~~~~~-~f~~~i~~~~rQ~~ 130 (237)
T 3fss_A 99 ENTLNQFKK-LGLLDSNVT-DFEKCVEYIRKQAI 130 (237)
T ss_dssp HHHHHHHHH-TTSSCTTCC-CTHHHHHHHHHHHH
T ss_pred HHhhhhhhh-cCCCcccch-hHHHHHHHHHHHHh
Confidence 457899998 588888777 99999999876655
No 7
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=18.40 E-value=2.2e+02 Score=24.53 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHhHHHH-----------HHHHhHHHHHHHHHHHHHHHH
Q 005261 75 VIKCAEIQSAISEGATSF-----------LFTEYQYVGVFMVAFAILIFL 113 (705)
Q Consensus 75 ~~~m~~Is~~I~eGA~af-----------L~~qyk~i~~~~~v~~~~l~~ 113 (705)
.+.+.+=++..++.|..| .-+.||...++.+++.+++++
T Consensus 35 L~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~i 84 (91)
T 3hd7_A 35 LSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILII 84 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554 334567666666655555544
No 8
>2o1k_A NS28, non-structural glycoprotein NSP4; rotavirus enterotoxin, nonstructural protein, tetramer coiled-coil, virulence, viral protein; 1.67A {Simian rotavirus A} PDB: 2o1j_A 1g1j_A* 1g1i_A* 3miw_B
Probab=16.78 E-value=51 Score=26.26 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhccC
Q 005261 603 SAALKMVEEVRRQFNTI 619 (705)
Q Consensus 603 ~aA~~mV~EVRRQFrei 619 (705)
+.+.++|.|.|||.+-|
T Consensus 3 ~~mdrivkemrrQl~mI 19 (52)
T 2o1k_A 3 KQMDRVVKEMRRQLEMI 19 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45789999999998654
No 9
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=16.49 E-value=19 Score=32.43 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=26.8
Q ss_pred hhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHh
Q 005261 586 GAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIK 644 (705)
Q Consensus 586 G~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlk 644 (705)
|..+-.+|.+-.|.+|. .+++++||.|. ||- =. ..-.+||+++|....|.
T Consensus 11 ~~~~~~~~~~~~~~~Vs------ae~L~eEfdef-Gi~-~~-d~VldKc~ELC~~y~ld 60 (101)
T 2keb_A 11 GSSLEVLFQGPGSMSAS------AQQLAEELQIF-GLD-CE-EALIEKLVELCVQYGQN 60 (101)
T ss_dssp -------------CCCC------HHHHHHHHHHH-TCB-CC-HHHHHHHHHHHHHHTCC
T ss_pred CccchheeeCCchhhcc------HHHHHHHHHHc-CCC-CC-HHHHHHHHHHHHHcCCC
Confidence 45666778777777775 58899999985 331 11 13479999999999875
No 10
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A {Mycobacterium tuberculosis}
Probab=16.48 E-value=42 Score=35.79 Aligned_cols=19 Identities=47% Similarity=0.686 Sum_probs=15.7
Q ss_pred hhhhccccccccccCCCCCCCC
Q 005261 255 AADVGADLVGKVERNIPEDDPR 276 (705)
Q Consensus 255 AADVGADLVGKVEagIPEDDPR 276 (705)
=||.|||.+ |||. |.||+|
T Consensus 28 LAdlGAeVI-KVE~--pgd~~~ 46 (359)
T 2g04_A 28 LADLGADVV-RVRR--PGGLTM 46 (359)
T ss_dssp HHHTTCEEE-EEEC--TTCCCS
T ss_pred HHHcCCcEE-EEcC--CCCCcc
Confidence 389999999 9996 667775
Done!