Query 005261
Match_columns 705
No_of_seqs 138 out of 741
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 20:14:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005261.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005261hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d4sgbi_ g.69.1.1 (I:) Plant ch 26.8 8.6 0.00062 28.6 0.7 9 271-279 26-34 (51)
2 d1tiha_ g.69.1.1 (A:) Multidom 22.7 12 0.00086 28.0 0.8 10 271-280 27-36 (53)
3 d1pjua1 g.69.1.1 (A:16-74) Wou 16.1 18 0.0013 27.4 0.6 10 271-280 35-44 (59)
4 d1jboa_ a.1.1.3 (A:) Phycocyan 13.3 70 0.0051 28.3 3.9 40 598-637 41-87 (162)
5 d1jhfa1 a.4.5.2 (A:2-72) LexA 11.2 43 0.0032 25.6 1.5 25 421-445 10-35 (71)
6 d1oyvi_ g.69.1.1 (I:) Wound-in 10.9 34 0.0024 29.1 0.8 10 271-280 50-59 (116)
7 d1lkta_ b.90.1.1 (A:) Head-bin 10.4 41 0.003 28.2 1.1 29 251-279 11-39 (104)
8 d1oedb_ f.36.1.1 (B:) Acetylch 9.7 3.5E+02 0.026 23.7 7.8 72 366-442 32-103 (250)
9 d2vv5a3 f.34.1.1 (A:27-112) Me 8.6 3.1E+02 0.023 20.6 6.0 23 86-108 36-58 (86)
10 d1yuaa2 g.41.3.3 (A:66-122) Pr 7.9 55 0.004 24.8 0.8 11 271-281 10-21 (57)
No 1
>d4sgbi_ g.69.1.1 (I:) Plant chymotrypsin inhibitor {Potato tuber (Solanum tuberosum) [TaxId: 4113]}
Probab=26.83 E-value=8.6 Score=28.60 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=7.6
Q ss_pred CCCCCCCcc
Q 005261 271 PEDDPRNPA 279 (705)
Q Consensus 271 PEDDPRNPa 279 (705)
-|.|||||-
T Consensus 26 GeSdp~npk 34 (51)
T d4sgbi_ 26 GQSDPKKPK 34 (51)
T ss_dssp CCBCTTSCC
T ss_pred CCCCCCCCC
Confidence 588999995
No 2
>d1tiha_ g.69.1.1 (A:) Multidomain proteinase inhibitor {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=22.74 E-value=12 Score=27.97 Aligned_cols=10 Identities=60% Similarity=1.019 Sum_probs=7.9
Q ss_pred CCCCCCCccc
Q 005261 271 PEDDPRNPAV 280 (705)
Q Consensus 271 PEDDPRNPav 280 (705)
-|.|||||-.
T Consensus 27 Gesdp~nPK~ 36 (53)
T d1tiha_ 27 GESDPRNPKA 36 (53)
T ss_dssp CCCCSSSSCC
T ss_pred CCCCCCCCCc
Confidence 5889999853
No 3
>d1pjua1 g.69.1.1 (A:16-74) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=16.14 E-value=18 Score=27.44 Aligned_cols=10 Identities=40% Similarity=0.840 Sum_probs=7.7
Q ss_pred CCCCCCCccc
Q 005261 271 PEDDPRNPAV 280 (705)
Q Consensus 271 PEDDPRNPav 280 (705)
-|.|||||-.
T Consensus 35 Gesdp~npka 44 (59)
T d1pjua1 35 GESDPKRPNA 44 (59)
T ss_dssp CCBBTTBCCE
T ss_pred CcCCCCCCCc
Confidence 4889999853
No 4
>d1jboa_ a.1.1.3 (A:) Phycocyanin alpha subunit {Synechococcus elongatus [TaxId: 32046]}
Probab=13.31 E-value=70 Score=28.32 Aligned_cols=40 Identities=13% Similarity=0.311 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhh-ccCCCCCC--CCCCC---C-hhHHHHH
Q 005261 598 MKSVGSAALKMVEEVRRQF-NTIPGLME--GTAKP---D-YATCVKI 637 (705)
Q Consensus 598 m~aVg~aA~~mV~EVRRQF-reipGi~e--g~~kP---D-Y~~cV~I 637 (705)
-+.....+.++|+|.++++ .+.|.+.+ |..-| + +++|.+=
T Consensus 41 a~~L~~na~~IV~~A~~~l~~~~P~l~~~gG~~y~~~~~r~~~C~RD 87 (162)
T d1jboa_ 41 ARALTNNAQSLIDGAAQAVYQKFPYTTTMQGSQYASTPEGKAKCARD 87 (162)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHCGGGGTSCSTTSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcCccCCCCccccccHHHHHHHHHH
Confidence 3556677899999998884 66898875 44444 2 5788654
No 5
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=11.21 E-value=43 Score=25.58 Aligned_cols=25 Identities=8% Similarity=0.316 Sum_probs=20.4
Q ss_pred HHHHHhhhhccCCCch-hHHHHhhcc
Q 005261 421 IIGFVTEYYTSNAYSP-VQDVADSCR 445 (705)
Q Consensus 421 lI~~iTeYyTS~~~~P-Vr~IA~as~ 445 (705)
+.-++.+|+..+.|.| +|||++..-
T Consensus 10 vL~~I~~~~~~~G~~Ps~rei~~~~g 35 (71)
T d1jhfa1 10 VFDLIRDHISQTGMPPTRAEIAQRLG 35 (71)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcC
Confidence 4568899999999988 689998664
No 6
>d1oyvi_ g.69.1.1 (I:) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=10.91 E-value=34 Score=29.06 Aligned_cols=10 Identities=40% Similarity=0.840 Sum_probs=7.8
Q ss_pred CCCCCCCccc
Q 005261 271 PEDDPRNPAV 280 (705)
Q Consensus 271 PEDDPRNPav 280 (705)
-|.|||||-.
T Consensus 50 Gesdp~nPKa 59 (116)
T d1oyvi_ 50 GESDPKRPNA 59 (116)
T ss_dssp CCBCSSSCCE
T ss_pred CccCCCCCCc
Confidence 4889999853
No 7
>d1lkta_ b.90.1.1 (A:) Head-binding domain of phage P22 tailspike protein {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=10.40 E-value=41 Score=28.18 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=23.0
Q ss_pred cchhhhhhccccccccccCCCCCCCCCcc
Q 005261 251 IYTKAADVGADLVGKVERNIPEDDPRNPA 279 (705)
Q Consensus 251 IyTKAADVGADLVGKVEagIPEDDPRNPa 279 (705)
+||-+-.-=++.-||+=-|=...|||||+
T Consensus 11 ~ftm~r~F~~~~~GKiYIGk~~TDP~~p~ 39 (104)
T d1lkta_ 11 IFTESRSFKAVANGKIYIGQIDTDPVNPA 39 (104)
T ss_dssp CCBCSSSSCBCTTEEEEEESTTSCTTSGG
T ss_pred hhcccHHHHhhcCCcEEEecCCCCCCCcc
Confidence 45555556677889998899999999996
No 8
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=9.72 E-value=3.5e+02 Score=23.69 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccccccCccccchhhHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHh
Q 005261 366 KKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVAD 442 (705)
Q Consensus 366 ~~~~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~Gl~~g~lI~~iTeYyTS~~~~PVr~IA~ 442 (705)
|.++-++.+++...+.....-.+|..... -..+..|.....+++++-.-.-+..+.=||.+...+|+..+.+
T Consensus 32 r~~l~it~lL~~~~~~~~v~~~~P~~s~~-----~p~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~P~wvR 103 (250)
T d1oedb_ 32 KMSLSISALLAVTVFLLLLADKVPETSLS-----VPIIIRYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIR 103 (250)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----SCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred cEEeeHHHHHHHHHHHHHHHHhCCCCcCc-----chHHHHHHHHHHHHHHHHHHHHHhheeeeccCcccCCcchHHH
Confidence 66788888888877776666666653210 0111223222223333322222222333566666678777766
No 9
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=8.60 E-value=3.1e+02 Score=20.57 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=13.5
Q ss_pred HHhHHHHHHHHhHHHHHHHHHHH
Q 005261 86 SEGATSFLFTEYQYVGVFMVAFA 108 (705)
Q Consensus 86 ~eGA~afL~~qyk~i~~~~~v~~ 108 (705)
+++...++.+=.|+...+..++.
T Consensus 36 ~~~~~~~i~~~~~~~i~~i~~~~ 58 (86)
T d2vv5a3 36 DATVADFLSALVRYGIIAFTLIA 58 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777776666655544433
No 10
>d1yuaa2 g.41.3.3 (A:66-122) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=7.86 E-value=55 Score=24.81 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=8.6
Q ss_pred CCCCCC-Cccch
Q 005261 271 PEDDPR-NPAVI 281 (705)
Q Consensus 271 PEDDPR-NPavI 281 (705)
|+-||- ||+||
T Consensus 10 P~~D~dGn~~vv 21 (57)
T d1yuaa2 10 PQQDPEGNKTMV 21 (57)
T ss_dssp CSSCTTCCCEEE
T ss_pred CccCCCCCEeEE
Confidence 777776 89887
Done!