Query 005263
Match_columns 705
No_of_seqs 288 out of 1236
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 20:41:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4248 Ubiquitin-like protein 100.0 1.2E-38 2.5E-43 364.9 10.4 592 22-705 328-989 (1143)
2 cd01807 GDX_N ubiquitin-like d 99.7 1.1E-17 2.3E-22 141.0 8.6 73 19-91 1-73 (74)
3 cd01793 Fubi Fubi ubiquitin-li 99.7 2.2E-17 4.8E-22 139.4 8.5 74 19-94 1-74 (74)
4 PTZ00044 ubiquitin; Provisiona 99.7 4E-17 8.7E-22 137.2 9.0 75 19-93 1-75 (76)
5 cd01806 Nedd8 Nebb8-like ubiq 99.7 1.6E-16 3.6E-21 132.3 9.5 75 19-93 1-75 (76)
6 cd01802 AN1_N ubiquitin-like d 99.7 1.4E-16 3E-21 144.1 9.7 78 16-93 25-102 (103)
7 cd01797 NIRF_N amino-terminal 99.7 1.2E-16 2.7E-21 137.4 8.4 75 19-93 1-77 (78)
8 cd01803 Ubiquitin Ubiquitin. U 99.7 1.6E-16 3.6E-21 132.3 8.8 76 19-94 1-76 (76)
9 cd01810 ISG15_repeat2 ISG15 ub 99.7 1.6E-16 3.4E-21 134.2 8.3 73 21-93 1-73 (74)
10 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 2.3E-16 4.9E-21 134.6 8.6 72 18-89 1-72 (73)
11 cd01805 RAD23_N Ubiquitin-like 99.7 4.4E-16 9.4E-21 131.0 9.3 74 19-92 1-76 (77)
12 cd01804 midnolin_N Ubiquitin-l 99.6 6.1E-16 1.3E-20 132.6 8.9 76 18-94 1-76 (78)
13 cd01798 parkin_N amino-termina 99.6 4.2E-16 9.1E-21 129.9 7.6 70 21-90 1-70 (70)
14 cd01809 Scythe_N Ubiquitin-lik 99.6 7.3E-16 1.6E-20 127.2 8.6 72 19-90 1-72 (72)
15 cd01794 DC_UbP_C dendritic cel 99.6 1.1E-15 2.3E-20 129.2 7.4 69 21-89 1-69 (70)
16 cd01792 ISG15_repeat1 ISG15 ub 99.6 2.1E-15 4.5E-20 129.5 8.1 75 18-92 2-78 (80)
17 cd01808 hPLIC_N Ubiquitin-like 99.6 3E-15 6.4E-20 125.3 7.9 71 19-90 1-71 (71)
18 cd01790 Herp_N Homocysteine-re 99.6 3.7E-15 8E-20 129.8 7.7 72 18-89 1-78 (79)
19 PF00240 ubiquitin: Ubiquitin 99.6 6.9E-15 1.5E-19 121.1 7.8 68 24-91 1-68 (69)
20 cd01796 DDI1_N DNA damage indu 99.5 1.9E-14 4.1E-19 121.3 7.3 68 21-88 1-70 (71)
21 cd01812 BAG1_N Ubiquitin-like 99.5 3E-14 6.5E-19 117.7 7.6 70 19-89 1-70 (71)
22 cd01800 SF3a120_C Ubiquitin-li 99.5 3E-14 6.6E-19 121.2 7.7 69 26-94 5-73 (76)
23 cd01763 Sumo Small ubiquitin-r 99.5 1.1E-13 2.4E-18 121.0 10.8 83 12-94 5-87 (87)
24 TIGR00601 rad23 UV excision re 99.5 6.1E-14 1.3E-18 151.9 9.5 76 19-94 1-79 (378)
25 cd01813 UBP_N UBP ubiquitin pr 99.5 6.5E-14 1.4E-18 119.5 7.7 70 19-89 1-73 (74)
26 KOG0005 Ubiquitin-like protein 99.5 2.6E-14 5.7E-19 118.6 4.3 70 19-88 1-70 (70)
27 KOG0003 Ubiquitin/60s ribosoma 99.5 5.1E-15 1.1E-19 135.0 -0.3 77 19-95 1-77 (128)
28 KOG0004 Ubiquitin/40S ribosoma 99.5 2.1E-14 4.5E-19 138.1 3.9 77 19-95 1-77 (156)
29 KOG0010 Ubiquitin-like protein 99.4 1.2E-13 2.7E-18 151.7 7.5 78 17-95 14-91 (493)
30 smart00213 UBQ Ubiquitin homol 99.4 7.5E-13 1.6E-17 105.8 7.1 64 19-83 1-64 (64)
31 cd01799 Hoil1_N Ubiquitin-like 99.3 7.5E-12 1.6E-16 107.5 7.6 68 21-89 5-74 (75)
32 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 4.2E-12 9E-17 109.9 4.9 57 34-90 15-75 (75)
33 cd01814 NTGP5 Ubiquitin-like N 99.2 1.6E-11 3.4E-16 113.4 6.4 78 17-94 3-94 (113)
34 KOG0011 Nucleotide excision re 99.2 1.7E-11 3.7E-16 129.8 7.1 75 19-93 1-77 (340)
35 cd01769 UBL Ubiquitin-like dom 99.2 3.8E-11 8.2E-16 97.1 7.5 68 22-89 1-68 (69)
36 PF11976 Rad60-SLD: Ubiquitin- 99.1 1.8E-10 3.8E-15 96.0 8.9 71 19-89 1-72 (72)
37 cd01795 USP48_C USP ubiquitin- 98.9 1.7E-09 3.7E-14 98.3 6.8 65 29-93 15-80 (107)
38 KOG4248 Ubiquitin-like protein 98.9 1.3E-09 2.7E-14 128.1 6.7 74 20-94 4-77 (1143)
39 cd01789 Alp11_N Ubiquitin-like 98.9 6.4E-09 1.4E-13 90.9 9.2 72 19-90 2-81 (84)
40 KOG0001 Ubiquitin and ubiquiti 98.9 9.1E-09 2E-13 81.9 9.2 72 21-92 2-73 (75)
41 PF14560 Ubiquitin_2: Ubiquiti 98.7 3.6E-08 7.9E-13 86.0 8.2 72 19-90 2-83 (87)
42 PF13881 Rad60-SLD_2: Ubiquiti 98.7 8.9E-08 1.9E-12 88.5 10.0 76 18-93 2-91 (111)
43 PLN02560 enoyl-CoA reductase 98.7 3.7E-08 8.1E-13 104.8 7.9 69 19-87 1-80 (308)
44 cd01788 ElonginB Ubiquitin-lik 98.5 2.2E-07 4.7E-12 86.4 7.7 71 20-91 4-81 (119)
45 cd01801 Tsc13_N Ubiquitin-like 98.5 2.9E-07 6.3E-12 78.8 6.5 68 20-87 2-74 (77)
46 cd00196 UBQ Ubiquitin-like pro 98.4 1.2E-06 2.6E-11 65.3 7.4 67 23-89 2-68 (69)
47 cd01811 OASL_repeat1 2'-5' oli 98.1 9.1E-06 2E-10 70.9 7.6 72 19-91 1-77 (80)
48 PF11543 UN_NPL4: Nuclear pore 98.1 6.8E-06 1.5E-10 72.0 5.8 71 17-88 3-78 (80)
49 KOG1769 Ubiquitin-like protein 97.9 0.00012 2.7E-09 66.8 10.7 79 16-94 18-96 (99)
50 KOG1872 Ubiquitin-specific pro 97.8 4.1E-05 9E-10 85.2 6.9 73 19-92 4-77 (473)
51 KOG3493 Ubiquitin-like protein 97.7 1.4E-05 3E-10 68.2 1.8 71 19-89 2-72 (73)
52 KOG0006 E3 ubiquitin-protein l 97.7 4.6E-05 1E-09 81.4 6.0 71 19-89 1-74 (446)
53 KOG0003 Ubiquitin/60s ribosoma 97.5 2.6E-05 5.7E-10 72.2 0.3 39 105-143 8-47 (128)
54 KOG0004 Ubiquitin/40S ribosoma 97.5 3.6E-05 7.7E-10 75.1 1.0 45 101-145 2-49 (156)
55 cd01802 AN1_N ubiquitin-like d 97.4 2.1E-05 4.6E-10 71.7 -2.1 62 76-142 9-73 (103)
56 KOG4495 RNA polymerase II tran 97.2 0.00059 1.3E-08 62.4 5.7 61 19-80 3-65 (110)
57 PF08817 YukD: WXG100 protein 97.1 0.00098 2.1E-08 57.6 6.0 71 18-88 2-79 (79)
58 KOG0005 Ubiquitin-like protein 97.1 9.6E-05 2.1E-09 62.4 -0.2 42 103-144 6-48 (70)
59 PF00789 UBX: UBX domain; Int 96.9 0.0082 1.8E-07 51.5 9.4 74 15-88 3-81 (82)
60 cd01793 Fubi Fubi ubiquitin-li 96.6 0.00011 2.4E-09 62.3 -4.3 41 102-142 3-44 (74)
61 KOG4583 Membrane-associated ER 96.5 0.00035 7.7E-09 75.3 -1.7 78 16-93 7-90 (391)
62 PF10302 DUF2407: DUF2407 ubiq 96.5 0.0059 1.3E-07 55.7 5.9 57 21-77 3-64 (97)
63 smart00166 UBX Domain present 96.3 0.026 5.6E-07 48.7 8.6 71 17-87 3-78 (80)
64 KOG0013 Uncharacterized conser 96.2 0.0084 1.8E-07 61.6 5.8 75 17-91 144-221 (231)
65 PF13019 Telomere_Sde2: Telome 96.1 0.023 4.9E-07 56.5 8.3 76 19-94 1-88 (162)
66 cd01794 DC_UbP_C dendritic cel 96.0 0.00045 9.8E-09 58.8 -3.6 40 103-142 4-44 (70)
67 cd01767 UBX UBX (ubiquitin reg 95.9 0.055 1.2E-06 46.3 8.6 69 18-88 2-75 (77)
68 PF11470 TUG-UBL1: GLUT4 regul 95.6 0.034 7.3E-07 47.5 6.2 62 26-87 4-65 (65)
69 cd01807 GDX_N ubiquitin-like d 95.6 0.00066 1.4E-08 57.5 -4.1 38 105-142 8-46 (74)
70 COG5227 SMT3 Ubiquitin-like pr 95.6 0.017 3.8E-07 52.6 4.7 78 17-94 23-100 (103)
71 cd01772 SAKS1_UBX SAKS1-like U 95.5 0.083 1.8E-06 46.0 8.6 70 17-87 3-77 (79)
72 PTZ00044 ubiquitin; Provisiona 95.5 0.00069 1.5E-08 57.1 -4.2 38 105-142 8-46 (76)
73 cd01770 p47_UBX p47-like ubiqu 95.5 0.089 1.9E-06 46.1 8.6 68 18-85 4-75 (79)
74 COG5417 Uncharacterized small 95.2 0.097 2.1E-06 46.3 7.6 70 18-87 4-80 (81)
75 cd01796 DDI1_N DNA damage indu 95.1 0.0014 3.1E-08 55.5 -3.8 37 106-142 8-45 (71)
76 KOG1639 Steroid reductase requ 95.0 0.037 8E-07 58.4 5.5 69 19-87 1-76 (297)
77 cd01810 ISG15_repeat2 ISG15 ub 95.0 0.0016 3.5E-08 55.2 -3.8 39 104-142 5-44 (74)
78 cd01774 Faf1_like2_UBX Faf1 ik 94.7 0.21 4.6E-06 44.4 8.8 70 17-87 3-82 (85)
79 KOG3206 Alpha-tubulin folding 94.6 0.087 1.9E-06 54.4 6.8 74 19-92 2-83 (234)
80 cd01798 parkin_N amino-termina 94.4 0.0025 5.4E-08 53.3 -3.9 39 104-142 5-44 (70)
81 cd01797 NIRF_N amino-terminal 94.1 0.0041 8.8E-08 54.0 -3.4 38 105-142 8-48 (78)
82 cd01799 Hoil1_N Ubiquitin-like 94.1 0.0048 1.1E-07 53.4 -2.9 37 105-142 10-47 (75)
83 cd01773 Faf1_like1_UBX Faf1 ik 94.0 0.43 9.4E-06 42.7 9.0 73 16-89 3-80 (82)
84 cd01771 Faf1_UBX Faf1 UBX doma 93.9 0.45 9.7E-06 41.9 8.9 72 16-88 2-78 (80)
85 cd01791 Ubl5 UBL5 ubiquitin-li 93.8 0.0047 1E-07 53.2 -3.5 38 105-142 9-47 (73)
86 cd01800 SF3a120_C Ubiquitin-li 93.8 0.0044 9.6E-08 53.0 -3.7 38 105-142 5-43 (76)
87 cd01806 Nedd8 Nebb8-like ubiq 93.0 0.0066 1.4E-07 50.6 -3.8 38 105-142 8-46 (76)
88 cd01813 UBP_N UBP ubiquitin pr 92.8 0.0085 1.8E-07 51.6 -3.4 37 105-141 7-44 (74)
89 cd01804 midnolin_N Ubiquitin-l 92.7 0.0069 1.5E-07 52.3 -4.1 38 105-142 9-47 (78)
90 cd01803 Ubiquitin Ubiquitin. U 92.4 0.0092 2E-07 49.8 -3.7 38 105-142 8-46 (76)
91 cd01805 RAD23_N Ubiquitin-like 92.0 0.01 2.3E-07 50.0 -3.9 38 105-142 8-48 (77)
92 cd01809 Scythe_N Ubiquitin-lik 90.9 0.015 3.2E-07 48.0 -3.9 38 105-142 8-46 (72)
93 cd00754 MoaD Ubiquitin domain 90.6 1.5 3.2E-05 37.1 7.8 58 30-92 17-78 (80)
94 PF09379 FERM_N: FERM N-termin 90.6 1.1 2.4E-05 37.9 7.1 68 23-90 1-77 (80)
95 PLN02799 Molybdopterin synthas 90.2 1.5 3.2E-05 37.9 7.7 69 18-91 1-79 (82)
96 cd01792 ISG15_repeat1 ISG15 ub 90.1 0.031 6.8E-07 48.2 -2.8 38 105-142 10-50 (80)
97 cd06406 PB1_P67 A PB1 domain i 89.7 1.5 3.2E-05 39.3 7.3 37 30-66 12-48 (80)
98 PF15044 CLU_N: Mitochondrial 89.1 0.59 1.3E-05 40.9 4.3 56 35-90 1-58 (76)
99 cd01812 BAG1_N Ubiquitin-like 89.0 0.038 8.3E-07 45.7 -2.9 36 107-142 9-45 (71)
100 KOG0012 DNA damage inducible p 88.7 0.66 1.4E-05 51.3 5.3 72 20-91 2-77 (380)
101 PRK06437 hypothetical protein; 87.6 3.6 7.8E-05 35.0 8.0 55 27-90 9-63 (67)
102 PRK08364 sulfur carrier protei 87.6 4.3 9.4E-05 34.6 8.6 63 18-90 4-66 (70)
103 PF00240 ubiquitin: Ubiquitin 87.3 0.021 4.4E-07 47.1 -5.6 38 105-142 3-41 (69)
104 cd01763 Sumo Small ubiquitin-r 87.1 0.06 1.3E-06 47.4 -3.1 39 105-143 19-58 (87)
105 smart00295 B41 Band 4.1 homolo 86.8 5.5 0.00012 38.6 10.0 76 17-92 2-85 (207)
106 cd06407 PB1_NLP A PB1 domain i 86.6 3 6.4E-05 37.1 7.2 71 19-90 1-81 (82)
107 cd01808 hPLIC_N Ubiquitin-like 86.0 0.057 1.2E-06 45.4 -3.6 37 105-142 8-45 (71)
108 TIGR00601 rad23 UV excision re 85.2 0.092 2E-06 58.2 -3.5 48 103-150 6-65 (378)
109 cd01790 Herp_N Homocysteine-re 85.2 0.1 2.2E-06 46.3 -2.7 40 103-142 7-51 (79)
110 smart00666 PB1 PB1 domain. Pho 84.9 3.5 7.6E-05 35.1 6.7 46 19-65 2-47 (81)
111 PRK06488 sulfur carrier protei 84.8 4.8 0.0001 33.5 7.3 57 27-91 6-62 (65)
112 cd01795 USP48_C USP ubiquitin- 84.2 0.14 3E-06 47.7 -2.3 34 109-142 16-50 (107)
113 PF12754 Blt1: Cell-cycle cont 84.1 0.32 6.9E-06 52.8 0.0 68 12-79 72-159 (309)
114 PF14836 Ubiquitin_3: Ubiquiti 84.0 4.8 0.0001 36.7 7.4 65 29-94 14-84 (88)
115 cd06409 PB1_MUG70 The MUG70 pr 83.4 2.8 6.2E-05 37.9 5.7 45 20-64 2-49 (86)
116 cd01815 BMSC_UbP_N Ubiquitin-l 82.6 0.12 2.7E-06 45.4 -3.1 26 117-142 20-49 (75)
117 TIGR01682 moaD molybdopterin c 82.5 9.5 0.00021 32.8 8.4 58 30-92 17-78 (80)
118 TIGR01687 moaD_arch MoaD famil 82.2 7.7 0.00017 33.8 7.9 61 29-93 16-87 (88)
119 PF11620 GABP-alpha: GA-bindin 82.2 3.3 7.2E-05 37.7 5.6 63 30-92 4-66 (88)
120 PF14453 ThiS-like: ThiS-like 81.9 3.9 8.4E-05 34.6 5.5 56 19-90 1-56 (57)
121 smart00213 UBQ Ubiquitin homol 81.1 0.1 2.3E-06 41.5 -3.9 35 108-142 10-45 (64)
122 cd06408 PB1_NoxR The PB1 domai 78.4 9.9 0.00021 34.6 7.4 47 18-66 2-48 (86)
123 PF00564 PB1: PB1 domain; Int 77.4 9.5 0.00021 32.4 6.8 47 18-65 1-48 (84)
124 PF10790 DUF2604: Protein of U 75.7 8.6 0.00019 33.7 5.9 65 27-91 4-72 (76)
125 PF02597 ThiS: ThiS family; I 75.0 11 0.00024 31.4 6.5 61 30-92 13-75 (77)
126 smart00455 RBD Raf-like Ras-bi 74.4 8.1 0.00018 33.4 5.5 45 21-65 2-46 (70)
127 KOG2982 Uncharacterized conser 73.3 5.8 0.00013 43.9 5.4 56 33-88 352-415 (418)
128 KOG2086 Protein tyrosine phosp 72.2 6.2 0.00013 44.3 5.4 68 18-85 305-376 (380)
129 cd05992 PB1 The PB1 domain is 71.7 12 0.00026 31.6 6.0 45 20-65 2-47 (81)
130 cd01760 RBD Ubiquitin-like dom 71.7 17 0.00038 31.8 7.0 45 21-65 2-46 (72)
131 smart00144 PI3K_rbd PI3-kinase 71.5 26 0.00057 32.4 8.5 75 17-91 16-105 (108)
132 cd06398 PB1_Joka2 The PB1 doma 70.7 15 0.00033 33.3 6.7 71 20-91 2-88 (91)
133 PRK05863 sulfur carrier protei 69.9 18 0.00039 30.4 6.5 57 27-91 6-62 (65)
134 TIGR02958 sec_mycoba_snm4 secr 69.8 21 0.00045 40.9 9.0 74 19-93 3-83 (452)
135 cd01814 NTGP5 Ubiquitin-like N 68.6 0.52 1.1E-05 44.6 -3.2 31 112-142 20-58 (113)
136 PRK06083 sulfur carrier protei 68.5 32 0.0007 30.9 8.1 65 17-91 17-81 (84)
137 PF10209 DUF2340: Uncharacteri 68.2 8.6 0.00019 37.1 4.7 57 34-90 21-108 (122)
138 PRK05659 sulfur carrier protei 67.8 30 0.00065 28.6 7.4 58 27-91 6-63 (66)
139 PRK08053 sulfur carrier protei 67.1 39 0.00083 28.4 7.9 63 19-91 1-63 (66)
140 PF12436 USP7_ICP0_bdg: ICP0-b 65.9 13 0.00028 39.0 6.0 79 13-91 63-153 (249)
141 PF00794 PI3K_rbd: PI3-kinase 64.4 41 0.00088 30.6 8.2 75 16-90 14-102 (106)
142 cd01768 RA RA (Ras-associating 64.0 51 0.0011 28.5 8.4 35 28-62 12-48 (87)
143 cd00565 ThiS ThiaminS ubiquiti 63.3 26 0.00057 29.1 6.2 58 27-91 5-62 (65)
144 PF08337 Plexin_cytopl: Plexin 62.3 17 0.00037 42.7 6.5 77 16-92 187-291 (539)
145 PF02196 RBD: Raf-like Ras-bin 61.6 36 0.00077 29.4 6.9 53 21-73 3-57 (71)
146 cd06411 PB1_p51 The PB1 domain 61.3 22 0.00049 31.9 5.7 36 30-65 8-43 (78)
147 KOG0001 Ubiquitin and ubiquiti 59.7 0.87 1.9E-05 35.9 -3.1 37 105-141 7-44 (75)
148 PRK06944 sulfur carrier protei 59.4 59 0.0013 26.7 7.6 58 27-92 6-63 (65)
149 cd06396 PB1_NBR1 The PB1 domai 59.4 28 0.0006 31.5 6.0 35 20-55 2-38 (81)
150 TIGR01683 thiS thiamine biosyn 57.9 43 0.00092 27.8 6.6 58 27-91 4-61 (64)
151 PF00788 RA: Ras association ( 57.3 56 0.0012 27.9 7.5 42 20-61 4-51 (93)
152 KOG2561 Adaptor protein NUB1, 56.4 4.2 9E-05 46.6 0.4 59 32-90 53-111 (568)
153 cd01787 GRB7_RA RA (RAS-associ 53.8 32 0.00069 31.4 5.5 59 19-77 3-68 (85)
154 PRK11130 moaD molybdopterin sy 53.7 1E+02 0.0022 26.7 8.5 54 33-91 19-78 (81)
155 cd01769 UBL Ubiquitin-like dom 53.7 1.1 2.3E-05 36.1 -3.6 37 106-142 6-43 (69)
156 cd06410 PB1_UP2 Uncharacterize 50.9 44 0.00096 30.8 6.0 40 23-63 17-56 (97)
157 PF02505 MCR_D: Methyl-coenzym 50.9 29 0.00064 34.7 5.2 54 17-77 66-120 (153)
158 KOG4250 TANK binding protein k 50.7 28 0.00061 42.1 5.9 42 27-68 323-364 (732)
159 PRK07440 hypothetical protein; 49.7 1.2E+02 0.0027 26.0 8.2 64 18-91 4-67 (70)
160 KOG0010 Ubiquitin-like protein 49.7 4.1 8.8E-05 46.9 -1.0 33 110-142 27-60 (493)
161 PRK11840 bifunctional sulfur c 49.3 90 0.0019 34.8 9.1 62 27-95 6-67 (326)
162 TIGR03260 met_CoM_red_D methyl 47.9 34 0.00073 34.2 5.0 54 17-77 65-118 (150)
163 KOG0011 Nucleotide excision re 47.3 3.7 7.9E-05 45.3 -1.7 40 103-142 6-48 (340)
164 PF14732 UAE_UbL: Ubiquitin/SU 45.7 23 0.00051 31.7 3.4 56 33-88 2-67 (87)
165 PF11069 DUF2870: Protein of u 45.3 24 0.00053 32.9 3.4 35 60-94 3-38 (98)
166 PF14533 USP7_C2: Ubiquitin-sp 44.9 77 0.0017 32.6 7.4 104 29-134 34-160 (213)
167 cd01764 Urm1 Urm1-like ubuitin 44.7 79 0.0017 28.7 6.6 58 33-92 23-92 (94)
168 KOG2689 Predicted ubiquitin re 44.5 84 0.0018 34.4 7.7 71 17-87 209-284 (290)
169 KOG0007 Splicing factor 3a, su 44.1 10 0.00022 41.6 1.0 50 25-74 289-339 (341)
170 PRK07696 sulfur carrier protei 43.4 1.4E+02 0.003 25.4 7.5 58 27-91 6-64 (67)
171 PF10407 Cytokin_check_N: Cdc1 43.2 65 0.0014 28.6 5.6 62 29-91 3-71 (73)
172 PF02017 CIDE-N: CIDE-N domain 37.1 87 0.0019 28.2 5.5 64 21-90 5-71 (78)
173 PLN02560 enoyl-CoA reductase 36.7 5 0.00011 43.7 -2.7 36 106-141 9-49 (308)
174 cd01817 RGS12_RBD Ubiquitin do 35.1 2E+02 0.0044 25.7 7.4 43 23-65 4-46 (73)
175 PRK01777 hypothetical protein; 35.1 2.4E+02 0.0053 25.9 8.2 67 18-93 3-79 (95)
176 KOG3439 Protein conjugation fa 35.0 1.5E+02 0.0032 28.6 6.9 52 17-68 29-84 (116)
177 PF10824 DUF2580: Protein of u 33.2 69 0.0015 27.5 4.2 68 214-282 4-84 (100)
178 PF14847 Ras_bdg_2: Ras-bindin 33.1 98 0.0021 29.1 5.4 36 21-56 3-38 (105)
179 cd06397 PB1_UP1 Uncharacterize 32.4 1.2E+02 0.0026 27.7 5.6 44 20-64 2-45 (82)
180 cd01777 SNX27_RA Ubiquitin dom 31.7 88 0.0019 28.8 4.7 42 19-60 2-43 (87)
181 PF14451 Ub-Mut7C: Mut7-C ubiq 30.7 1.7E+02 0.0036 26.3 6.2 54 28-90 22-76 (81)
182 PF11816 DUF3337: Domain of un 30.2 1.1E+02 0.0024 33.5 6.2 61 32-92 251-329 (331)
183 PF08825 E2_bind: E2 binding d 29.8 75 0.0016 28.7 4.0 55 33-88 1-69 (84)
184 PF08783 DWNN: DWNN domain; I 29.7 1.3E+02 0.0028 26.8 5.3 33 22-54 2-36 (74)
185 KOG4261 Talin [Cytoskeleton] 29.6 72 0.0016 39.3 4.8 107 19-132 4-120 (1003)
186 KOG1364 Predicted ubiquitin re 28.7 64 0.0014 36.2 4.0 66 19-84 278-349 (356)
187 PF11740 KfrA_N: Plasmid repli 28.6 2.7E+02 0.0059 25.4 7.5 58 220-277 32-92 (120)
188 cd01611 GABARAP Ubiquitin doma 28.4 1.8E+02 0.0039 27.6 6.4 57 33-90 45-106 (112)
189 KOG2507 Ubiquitin regulatory p 28.3 1.1E+02 0.0024 35.4 5.8 77 17-93 313-394 (506)
190 PF06234 TmoB: Toluene-4-monoo 27.8 2E+02 0.0044 26.4 6.3 71 20-90 5-84 (85)
191 PF03671 Ufm1: Ubiquitin fold 27.3 2.7E+02 0.0058 25.2 6.7 60 29-88 15-76 (76)
192 smart00266 CAD Domains present 26.4 1.5E+02 0.0033 26.5 5.1 50 38-90 18-69 (74)
193 PF12436 USP7_ICP0_bdg: ICP0-b 25.8 1.4E+02 0.0031 31.4 5.8 45 18-62 176-223 (249)
194 COG0089 RplW Ribosomal protein 25.6 2.3E+02 0.0049 26.5 6.3 40 27-66 20-60 (94)
195 PTZ00380 microtubule-associate 25.4 1.1E+02 0.0024 29.7 4.4 62 29-90 41-105 (121)
196 PRK05738 rplW 50S ribosomal pr 25.0 1.5E+02 0.0033 27.0 5.1 40 28-67 20-60 (92)
197 cd01612 APG12_C Ubiquitin-like 24.9 4.8E+02 0.01 23.6 8.2 59 31-90 18-81 (87)
198 PF11834 DUF3354: Domain of un 24.9 1.1E+02 0.0024 26.8 4.0 43 39-88 26-69 (69)
199 PF00276 Ribosomal_L23: Riboso 24.8 1.2E+02 0.0026 27.4 4.4 41 29-69 21-62 (91)
200 PF01627 Hpt: Hpt domain; Int 24.6 2.6E+02 0.0057 23.1 6.2 70 222-296 7-76 (90)
201 KOG4146 Ubiquitin-like protein 23.7 5.7E+02 0.012 24.2 8.4 76 17-93 3-100 (101)
202 KOG4572 Predicted DNA-binding 23.5 95 0.0021 38.5 4.4 62 27-88 3-68 (1424)
203 COG4055 McrD Methyl coenzyme M 23.2 1.7E+02 0.0038 29.5 5.4 59 17-83 74-133 (165)
204 cd01766 Ufm1 Urm1-like ubiquit 23.0 4.1E+02 0.0088 24.2 7.1 75 18-92 4-80 (82)
205 cd01818 TIAM1_RBD Ubiquitin do 22.9 2.1E+02 0.0046 25.9 5.4 39 22-60 3-41 (77)
206 smart00314 RA Ras association 22.0 3.3E+02 0.0071 23.6 6.5 52 19-70 5-64 (90)
207 KOG3751 Growth factor receptor 21.9 1.5E+02 0.0033 35.1 5.5 76 16-91 186-272 (622)
208 cd06539 CIDE_N_A CIDE_N domain 21.3 1.8E+02 0.0039 26.3 4.7 49 38-89 20-70 (78)
209 PRK05841 flgE flagellar hook p 20.2 1.4E+02 0.0031 35.8 4.9 42 16-57 246-296 (603)
No 1
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-38 Score=364.85 Aligned_cols=592 Identities=20% Similarity=0.182 Sum_probs=372.2
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCCCCC-C-
Q 005263 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSD-G- 99 (705)
Q Consensus 22 ~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~sts-~- 99 (705)
..|++....+...+....++...|.+|.+.+|||...++|+|-|..++++..+..|+.+.+.+.+..+..+....+. +
T Consensus 328 l~~~l~~p~~~~~~~~~~~~~~~~p~~~~qtgipi~~~~l~~vg~~~n~d~P~s~~~~e~~~~~p~~~aspa~s~~~~~t 407 (1143)
T KOG4248|consen 328 LRCNLACPPPRHLHVVRPMSHYTTPMVLQQTGIPIQINVLTTVGMTGNGDRPPSTPNAEAPPPGPGQAASPAPSSTNVET 407 (1143)
T ss_pred hhhcccCCCCceeeecchhhhccCceeeecccccccccceeeecccccCCCCCCccccccCCCCCccccCcCccccCCCC
Confidence 34555566677777778888888999999999999999999999999999999999999999999977766554321 1
Q ss_pred ccccC--------CCCCCc-ccccccccccccccccccCCCCCchhHHHHHHHHhhcCCCCCC---CCCCCc-ccc----
Q 005263 100 THNLP--------GTSRSH-GSHVAPSVVIETFNLPDRGDGVPSEISQIVSAVLGSFGLSNIG---SGGGGI-DLR---- 162 (705)
Q Consensus 100 ~qI~v--------~tGrti-Tl~V~pSdTIe~LKvkIqkeGIPpdqQRLIfavL~s~G~~~~~---~G~~~~-~~~---- 162 (705)
..-++ ..+... ...+.......-++...+-+++-.++-...-++...+|..++. ++..+. +..
T Consensus 408 p~qGatt~~~~~~~~~~~~~~~~iSh~s~~dv~~~~~qle~i~~q~~Gv~~~~~~~lg~~Ga~~~na~~~~~~~l~Pthq 487 (1143)
T KOG4248|consen 408 PAQGATTPGPAGTPIGSHPRVIRISHQSVEDVVRMHMQLEDIGTQLGGVPGARTAVLGSPGAGQTNAQQVPGFDLAPTHQ 487 (1143)
T ss_pred cccCCcCCCCCCCCCcccccceeccchhhhhHHHHHHHHHhhhhcccCCcccccccccccccCCCccccCCCCcCCCcce
Confidence 00011 111111 1122221111111111111222111112222222233222211 111111 111
Q ss_pred ---ccccCCCCccCCCCCcccccCCCCCCCCcccccCCCCccccCCC----ccCCCCCCCCCCCCchhhHHHHHHHHHhh
Q 005263 163 ---EHAMQRPERTSDAGSALDSAHQQPEQGGTRFQSNRPHSAFGIPT----AISLGTLQPPVIPDSLTTLSQYLSQLRHE 235 (705)
Q Consensus 163 ---~~~~~~~~~ts~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~p~----~~~~~~~~~~ViPDsLttLsqyl~rmr~~ 235 (705)
...+.+.++.+..... .++.++...-+..+...+. ...|. ..++..+.. .|| .+|..+.++|...
T Consensus 488 ~~~~pd~P~i~p~ssg~e~-~s~~q~~~glstd~S~~q~---~s~~dt~~~t~Pv~~lr~-~vp---~~l~~~~~qv~~a 559 (1143)
T KOG4248|consen 488 VIARPDGPGIGPFSSGGEP-NSPTQQGAGLSTDHSLAQM---VSGPDTQLTTIPVLVLRG-CVP---GMLPPPGPQVASA 559 (1143)
T ss_pred eecCCCCCCCCCCCCCCCC-cChhhhccccccccchhhh---ccCCCccceeeccchhhc-cch---hhcCCcchhHHHh
Confidence 0111111111111110 1111111111111111111 11110 001111111 233 4566777777777
Q ss_pred hccC-----------CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhhhhhHH--hHHHHHhH
Q 005263 236 FDGI-----------GSLQEGLPMPASLAEVMQSTRQMLIEQSAECLHQLARQLENQANVTDPSLRTSIQ--TTAWSAGL 302 (705)
Q Consensus 236 f~~~-----------~~~~~~lps~~~L~~~~~~t~qll~~~a~~~ls~la~~l~~~~~~tD~~~R~~iQ--~~a~~~G~ 302 (705)
++.. ....+.++.+++|++|+.+|+|||++..++||++++++|++.++|+||.+|+++| +++++.|.
T Consensus 560 ~d~~nq~~~n~q~p~~~~~e~i~rp~hla~Ll~st~qll~g~~A~~lSnis~~lsd~vsvSdPsaral~Q~~t~~~qsgs 639 (1143)
T KOG4248|consen 560 LDTGNQADTNGQAPGGPAEEPIARPPHLAELLFSTRQLLSGEPAGCLSNISGVLSDTVSVSDPSARALRQGMTRFLQSGS 639 (1143)
T ss_pred hhccccccccccCCCCCccccCCCchHHHHHHHHHHHHHhcCCcccccCccccccCCcccCCCcchhhhhhhhhhhhhcc
Confidence 7322 3344678999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHhhcceeeEeecCCCCcccccccCCeeEeCCCCCCCcccCCCCCCCCCccccccCCCcCCCCCCCCcccCC
Q 005263 303 LLHNLGAFLLELGRTTMTLRLGQTPSEAVVNAGPAVFISPSGPNPLMVQPLPFQPGTSFGAIPMGSVQPGSGLVNGRSAG 382 (705)
Q Consensus 303 ~~~~Lga~llelgRttmtLr~g~tp~ea~vn~gpAv~ispsGpnp~mvqp~p~q~~~~fg~~~~~s~~~~~~~~~~~g~~ 382 (705)
+|+|||..||||||||+|++||+| .+|+||||||||+|+||+|++|||-+--.+|-.|=.+... -|....|..
T Consensus 640 ~le~lG~~ll~lgpaTst~tmgpS----~~~ag~av~iSP~Gr~p~~~t~les~~p~l~Tsi~s~~~~---~~Ta~~g~~ 712 (1143)
T KOG4248|consen 640 LLEHLGIPLLELGPATSTQTMGPS----EPDAGIAVFISPGGRRPNRRTPLESHSPELFTSIRSGNHI---VLTAPRGSL 712 (1143)
T ss_pred cccCCCCccccCCCccccccCCCC----ccCcCcccccCCCCCCCcccCcccccCchhhccccccccc---ccccccccc
Confidence 999999999999999999999999 8999999999999999999999999888777775333211 122233333
Q ss_pred CC-----------CceeeeEeeeCccccCCCCcccccccccCCCCCCCccccCCCCCCCCCccccCCCCCCCCCCCCcee
Q 005263 383 FL-----------PRRIDIQIRRGSSMVGSNAIQEERSNTQQAPGQGNTATASGTDNLGSQATTRNSDGSSSAGESGVRV 451 (705)
Q Consensus 383 ~~-----------pr~~~i~i~~g~s~~~~~~n~~e~~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~r~ 451 (705)
.+ ||.|-|.+..|.+..++++++.+..+++.....+.++...+
T Consensus 713 ta~a~ssv~~~agpa~i~~~~~vgn~~~~~~~~q~d~sgtt~s~~sttPS~p~~-------------------------- 766 (1143)
T KOG4248|consen 713 TARAGSSVSTEAGPAGIQRLSGVGNIFEPGADGQLDFSGTTDSPLSQTPSMPDV-------------------------- 766 (1143)
T ss_pred cccccccccccCCCCCceeeeccccccCCCCCCccCCCcccCCccccCCCCCCc--------------------------
Confidence 44 45555555566666777777777666666655555533111
Q ss_pred eeeeeeeeeccCCCCCCCCCC-CCCCceeeeeeeeeeeeeecCCccCCCCCCCCCCCCCCCCccCCCCCCCcccccc-CC
Q 005263 452 VPVRTMVAPVPAPFGRLPSDS-SSNPVSLYYPVLGRFQHVASGLVSGEQGHQVSGEHHPAGLQTEQPSVPDSIGQQN-AE 529 (705)
Q Consensus 452 ~p~rtvvaavp~~~~r~ps~s-s~~~~gl~~pv~~r~q~~~~~~~~~~~~~q~~~e~~~~~~~~~~~~~~~~~~~~~-~~ 529 (705)
| -+|.+.-+..+|| ....|-.++|...+++|+-.--. ++ ...++....+.+.|....++ .-
T Consensus 767 ----t---~l~t~~~~~~~ds~lq~qm~~~~~dv~n~g~~Q~p~~---------ia-~~~a~~~~~~~l~~l~~e~~s~~ 829 (1143)
T KOG4248|consen 767 ----T---NLPTGHPQPLQDSTLQPQLRSFFPDVYNGGHVQIPTP---------IA-IRMALDTLGTGLEELVRESFSLV 829 (1143)
T ss_pred ----c---cccCCCCCCCCchhhhhhhhhhchhhhccccccccch---------hh-hhhhhhhhccchhhhcccccccc
Confidence 1 2344555677777 78888999999999885422111 00 11223334556666663333 23
Q ss_pred CCCCCCCCCCCCccccccCCCCeeeeecccCCCCCCChhhhhhhhhhHHHHHhhhCCCCceeecCCCcccccCCCCCccc
Q 005263 530 DPARNGSLANPNSRQQEASHSHSVNVGTLSTAGTQDNQESERQIRSGVLQLLRNLFPGGEIHVENGGLHGTASDSVPEHA 609 (705)
Q Consensus 530 ~~~~~~~~~~p~~~~~~~~~~~~~~in~~~~~g~~~~~~~~~~~~~~~~q~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 609 (705)
...|..+.. ..+| .+-++++.++|.|+++.|-|.+ ....|....+.+.....
T Consensus 830 a~~~~~ds~--------------------~~pg----~~l~sEr~N~i~q~vkpltps~-~aag~~e~~nq~~pe~~--- 881 (1143)
T KOG4248|consen 830 AVQRGVDSI--------------------IRPG----LRLLSERFNSIAQHVKPLTPSG-FAAGLLELCNQALPECL--- 881 (1143)
T ss_pred CcccCcCcc--------------------cccc----cchHHHHhhhhhhccccCCccc-cchhhHHHHhccchhhH---
Confidence 333332211 2233 6778889999999999998886 55566666777765443
Q ss_pred ccccccccccCCCccccccc------CcchhHHHH--HHHhhhccccccCCCCCCCCCCCCCcccccccCCCCCCC---C
Q 005263 610 ATFRDRVVSSTGSSAAEASA------TDEGIFLSN--LLHQIMPFISQHSSAEPTVTPLEDTNAFEHRMSQDSSTH---A 678 (705)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~------~~eg~~~s~--~l~~imp~isq~~~~~~~~~~~~~~~~~~~~~~~~ss~~---~ 678 (705)
+.++...+.+.+|-++.- +-||.|.|. ++.+||+||.|+++..-.+ +-..--.++...+.|.+ .
T Consensus 882 --a~t~l~lgv~n~E~~~rq~~~~~~~~~g~~~sl~~frqq~mq~l~~~va~si~a---~t~t~~~sn~rv~~s~q~~~e 956 (1143)
T KOG4248|consen 882 --ALTLLCLGVANAELAPRQNGRIRRMSEGVNPSLVSFRQQMMQFLLQVVAESIPA---GTDTGLGSNRRVGDSPQALPE 956 (1143)
T ss_pred --HHHHHhhcccchhhhhhhhcccccccccccccHHHHHHHHHHHHHHhhhccCcc---cchhhcccccccccccccccc
Confidence 577888888888766644 339999887 9999999999999877663 22333455556677665 3
Q ss_pred CCCCcc-------cccccCCCCCCCCCcccccCC
Q 005263 679 GSSSVR-------TSRRQSDSEPSAPNPKRQKME 705 (705)
Q Consensus 679 ~~s~~~-------~s~~~~~~~~~~pnskrqk~e 705 (705)
|++.+. .++++ .+.++++.+|+|+||
T Consensus 957 ~~t~v~~~~~a~p~sq~~-~~sp~~~tsm~Q~te 989 (1143)
T KOG4248|consen 957 EPTEVQGAERASPESQRE-NASPAPGTSMEQATE 989 (1143)
T ss_pred ccchhccccccCcccccc-cCCCCCcccHHHHhh
Confidence 567777 66666 889999999999986
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.73 E-value=1.1e-17 Score=141.02 Aligned_cols=73 Identities=34% Similarity=0.537 Sum_probs=71.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||+++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.71 E-value=2.2e-17 Score=139.35 Aligned_cols=74 Identities=30% Similarity=0.345 Sum_probs=70.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
|+|+||+. +++.++|++++||++||++|++++|+|+++|||+|+||.|+|+++|++|+|++++||||+++++++
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999984 789999999999999999999999999999999999999999999999999999999999998763
No 4
>PTZ00044 ubiquitin; Provisional
Probab=99.70 E-value=4e-17 Score=137.15 Aligned_cols=75 Identities=33% Similarity=0.469 Sum_probs=73.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|+++++|||++++.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999765
No 5
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.68 E-value=1.6e-16 Score=132.27 Aligned_cols=75 Identities=32% Similarity=0.533 Sum_probs=73.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+++|++|+|++|++|||++++++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999765
No 6
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.68 E-value=1.4e-16 Score=144.13 Aligned_cols=78 Identities=31% Similarity=0.444 Sum_probs=75.3
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
...|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|||+|+||.|+|+++|++|+|+++++|||++++++
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 457999999999999999999999999999999999999999999999999999999999999999999999999876
No 7
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.67 E-value=1.2e-16 Score=137.43 Aligned_cols=75 Identities=31% Similarity=0.474 Sum_probs=71.2
Q ss_pred EEEEEEeCCCcE-EEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 19 IEIKIKTLDSQT-YTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 19 MqI~VKtL~GKT-~tLe-VdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
|+|+||+++|++ +.++ +++++||.+||++|++++|+|+++|||+|+||.|+|+.+|++|+|+++++|||++++.+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 899999999997 6895 89999999999999999999999999999999999999999999999999999998743
No 8
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.67 E-value=1.6e-16 Score=132.26 Aligned_cols=76 Identities=37% Similarity=0.550 Sum_probs=73.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|+|+|+|+.|+|+++|++|+|++|++|||++++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998763
No 9
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.67 E-value=1.6e-16 Score=134.17 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=71.0
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 21 I~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
|+||+++|+++.++|++++||.+||++|+++.|+|+++|+|+|+||.|+|+++|++|+|+++++|+|++++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999865
No 10
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.66 E-value=2.3e-16 Score=134.62 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=70.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEee
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
+|+|+||++.|+.+.++|++++||.+||++|+++.++++++|||+|.||.|+|+++|++|||++|++|||..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999999999999985
No 11
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.65 E-value=4.4e-16 Score=130.98 Aligned_cols=74 Identities=39% Similarity=0.641 Sum_probs=71.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGI--PpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
|+|+||+.+|+++.++|++++||.+||++|++++|+ ++++|||+|+|+.|+|+++|++|+|++|++|+++++.+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 799999999999999999999999999999999999 99999999999999999999999999999999999865
No 12
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.64 E-value=6.1e-16 Score=132.65 Aligned_cols=76 Identities=22% Similarity=0.307 Sum_probs=72.6
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
.|+|+||++.|+.+.++|+++.||.+||++|+++.++++++|||+|+||.|+|+ +|++|||++|++|||+..+.++
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 499999999999999999999999999999999999999999999999999999 9999999999999999987653
No 13
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.64 E-value=4.2e-16 Score=129.90 Aligned_cols=70 Identities=29% Similarity=0.456 Sum_probs=68.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeee
Q 005263 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 21 I~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
|+||+++|+++.++|++++||.+||++|++++|+|+++|+|+|+||.|+|+++|++|+|+++++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999875
No 14
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.64 E-value=7.3e-16 Score=127.15 Aligned_cols=72 Identities=61% Similarity=0.871 Sum_probs=70.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeee
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
|+|+||+++|+++.++|++++||.+||++|++++|+|++.|+|+|+|+.|+|+++|++|+|++|++|||+++
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999875
No 15
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.61 E-value=1.1e-15 Score=129.24 Aligned_cols=69 Identities=25% Similarity=0.367 Sum_probs=67.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEee
Q 005263 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 21 I~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
++||.++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+.+|.+|+|+++++|||++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999999999999987
No 16
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.60 E-value=2.1e-15 Score=129.48 Aligned_cols=75 Identities=31% Similarity=0.414 Sum_probs=72.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL--ICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRL--IF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
.|+|+||.++|+++.++|++++||.+||++|++++++++++||| +|+|+.|+|+++|++|||++|++|||++++.
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 39999999999999999999999999999999999999999999 8999999999999999999999999999853
No 17
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.59 E-value=3e-15 Score=125.33 Aligned_cols=71 Identities=30% Similarity=0.493 Sum_probs=67.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeee
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
|+|+||+.+|+ +.++|++++||.+||++|++++|+++++|||+|+||.|+|+++|++|||+++++|||+++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 57999999997 589999999999999999999999999999999999999999999999999999999975
No 18
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.58 E-value=3.7e-15 Score=129.76 Aligned_cols=72 Identities=26% Similarity=0.336 Sum_probs=65.1
Q ss_pred cEEEEEEeCCCcEEE--EEecCCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCCCccccccc--ccCCCEEEEee
Q 005263 18 TIEIKIKTLDSQTYT--LRVDKQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYH--VEDGHTLHMVV 89 (705)
Q Consensus 18 tMqI~VKtL~GKT~t--LeVdpsdTV~eLKekIaektG--IPpeqQRLIF~GKvLkDdkTLsDYG--IedGSTIhLVl 89 (705)
.|.|+||+++++++. +++++++||.+||++|++..+ .++++|||||+||+|+|+++|++|. +.+++|||||+
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 389999999999955 555899999999999999874 5579999999999999999999996 99999999997
No 19
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.57 E-value=6.9e-15 Score=121.11 Aligned_cols=68 Identities=50% Similarity=0.761 Sum_probs=66.1
Q ss_pred EeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 24 KTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 24 KtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
|+++|+.|.++|++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|.+|+|++|++|+|++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 67899999999999999999999999999999999999999999999999999999999999999875
No 20
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.53 E-value=1.9e-14 Score=121.30 Aligned_cols=68 Identities=31% Similarity=0.516 Sum_probs=64.7
Q ss_pred EEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCC-cccccccccCCCEEEEe
Q 005263 21 IKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 21 I~VKtL-~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDd-kTLsDYGIedGSTIhLV 88 (705)
|+||+. +|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ .+|++|+|++|++|||-
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 899999999999999999999999999999999999999999987 68999999999999983
No 21
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.52 E-value=3e-14 Score=117.70 Aligned_cols=70 Identities=30% Similarity=0.455 Sum_probs=67.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEee
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
|+|+||+. |+.+.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|.+|+|++|++|+|+.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999996 99999999999999999999999999999999999999999999999999999999999974
No 22
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.51 E-value=3e-14 Score=121.19 Aligned_cols=69 Identities=26% Similarity=0.449 Sum_probs=66.3
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 26 L~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
++|+++.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|+|+++++|||+++++++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999998764
No 23
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.51 E-value=1.1e-13 Score=121.01 Aligned_cols=83 Identities=19% Similarity=0.363 Sum_probs=78.3
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 12 se~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
..+....|.|+|++.+|+++.++|.+++++..||++++++.|+++++|||+|+|+.|+|++|+.+|+|+++++|++++++
T Consensus 5 ~~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l 84 (87)
T cd01763 5 KGEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQ 84 (87)
T ss_pred CCCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 005263 92 PVP 94 (705)
Q Consensus 92 ~gg 94 (705)
.++
T Consensus 85 ~GG 87 (87)
T cd01763 85 TGG 87 (87)
T ss_pred ccC
Confidence 763
No 24
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=6.1e-14 Score=151.92 Aligned_cols=76 Identities=29% Similarity=0.530 Sum_probs=72.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektG---IPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
|+|+||+++|++|.|+|++++||.+||++|+++.| +++++|||||+||+|+|+++|++|+|+++++|+|+++++..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k~ 79 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPKT 79 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCCC
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999999987543
No 25
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.49 E-value=6.5e-14 Score=119.55 Aligned_cols=70 Identities=30% Similarity=0.443 Sum_probs=66.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe---CCeecCCCcccccccccCCCEEEEee
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC---RGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF---~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
|.|.||+ .|++|.++|++++||.+||++|++++++|+++|||+| +||.|+|+.+|++|+|++|++|+|+-
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 5789999 6899999999999999999999999999999999996 99999999999999999999999973
No 26
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.6e-14 Score=118.59 Aligned_cols=70 Identities=33% Similarity=0.561 Sum_probs=68.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEe
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLV 88 (705)
|.|+||++.||.+.|+++++++|+.+|++|+++.||||.+|||+|.||.+.|+++-.+|++.-|++||++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999985
No 27
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=5.1e-15 Score=135.04 Aligned_cols=77 Identities=35% Similarity=0.529 Sum_probs=74.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~ 95 (705)
|+|+++++.||+++++|++++||..||.+|..++|+|+++|+|+|+||.|+|..||++|+|+..+|||+++++.++.
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~ 77 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999874
No 28
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.1e-14 Score=138.09 Aligned_cols=77 Identities=36% Similarity=0.550 Sum_probs=74.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~ 95 (705)
|+|||+++.++++.++|+.++||..+|.+|+++++||+++|||||.|+.|+|+.+|+||+|+..+||||++++.++.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999998864
No 29
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.44 E-value=1.2e-13 Score=151.71 Aligned_cols=78 Identities=36% Similarity=0.581 Sum_probs=73.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~ 95 (705)
..++|+||+.++ ++.+.|..+.||.+||++|.+++++++++++|||+||+|||++||..|||+||+|||||+|....+
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~ 91 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRP 91 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCC
Confidence 469999999877 899999999999999999999999999999999999999999999999999999999999976543
No 30
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.39 E-value=7.5e-13 Score=105.82 Aligned_cols=64 Identities=53% Similarity=0.788 Sum_probs=61.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGH 83 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGS 83 (705)
|+|+||+.+ +++.++|++++||.+||++|++++++|+++|+|+|+|+.|+|+++|.+|+|++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 789999998 7999999999999999999999999999999999999999999999999999875
No 31
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.29 E-value=7.5e-12 Score=107.51 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=61.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecC-CCccccccccc-CCCEEEEee
Q 005263 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLK-DDQLLSAYHVE-DGHTLHMVV 89 (705)
Q Consensus 21 I~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLk-DdkTLsDYGIe-dGSTIhLVl 89 (705)
|.=|...++++.++|++++||.+||++|++++|+|+++||| |.|+.|. |+++|++|+|+ +|+++||.+
T Consensus 5 ~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 5 VEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 33345568999999999999999999999999999999999 9999885 77999999998 889999976
No 32
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.27 E-value=4.2e-12 Score=109.88 Aligned_cols=57 Identities=35% Similarity=0.489 Sum_probs=51.3
Q ss_pred Eec-CCCCHHHHHHHHHHHh--CCC-CCCeEEEeCCeecCCCcccccccccCCCEEEEeee
Q 005263 34 RVD-KQVPVPALKEQIASVT--GVL-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 34 eVd-psdTV~eLKekIaekt--GIP-peqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
+|. .++||.+||++|+++. +++ +++|||||+||+|+|+++|++|+|++|++|||+.+
T Consensus 15 ~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 15 DVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred CcCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 455 4789999999999996 575 89999999999999999999999999999999864
No 33
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.22 E-value=1.6e-11 Score=113.40 Aligned_cols=78 Identities=26% Similarity=0.369 Sum_probs=68.3
Q ss_pred CcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHHH-----HHhCCC--CCCeEEEeCCeecCCCccccccc------ccCC
Q 005263 17 TTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIA-----SVTGVL--SEQQRLICRGKVLKDDQLLSAYH------VEDG 82 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~-tLeVdpsdTV~eLKekIa-----ektGIP--peqQRLIF~GKvLkDdkTLsDYG------IedG 82 (705)
+.++|+++..+|..+ .+.+.+++||.+||++|+ .++++| +++|||||.||+|+|++||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 568999999999555 578999999999999999 444555 99999999999999999999999 7778
Q ss_pred CEEEEeeecCCC
Q 005263 83 HTLHMVVRQPVP 94 (705)
Q Consensus 83 STIhLVlRl~gg 94 (705)
.|+||+++.+..
T Consensus 83 ~TmHvvlr~~~~ 94 (113)
T cd01814 83 ITMHVVVQPPLA 94 (113)
T ss_pred eEEEEEecCCCC
Confidence 999999997654
No 34
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.21 E-value=1.7e-11 Score=129.78 Aligned_cols=75 Identities=31% Similarity=0.537 Sum_probs=72.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektG--IPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
|+|+||++++++|+|+|.+++||.++|++|+...| +|++.|+|||+||+|+|+.+|.+|+|++++.|.|++.+..
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 79999999999999999999999999999999998 9999999999999999999999999999999999998775
No 35
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.21 E-value=3.8e-11 Score=97.09 Aligned_cols=68 Identities=50% Similarity=0.751 Sum_probs=64.6
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEee
Q 005263 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 22 ~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
.||..+|+.+.+++.+++||.+||++|++.+++++++|+|+|+||.|+|+.+|.+|+|.++++|+++.
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 36777899999999999999999999999999999999999999999999999999999999999975
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.15 E-value=1.8e-10 Score=96.04 Aligned_cols=71 Identities=28% Similarity=0.482 Sum_probs=66.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCCeecCCCcccccccccCCCEEEEee
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPp-eqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
|+|+|++.+|+.+.+.|.+++++..|+++++++.+++. +.++|+|+|+.|++++|+.+|+|++|++|+|++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999999999999975
No 37
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.93 E-value=1.7e-09 Score=98.30 Aligned_cols=65 Identities=25% Similarity=0.253 Sum_probs=59.1
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecC-CCcccccccccCCCEEEEeeecCC
Q 005263 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLK-DDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 29 KT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLk-DdkTLsDYGIedGSTIhLVlRl~g 93 (705)
+...++|++++||.+||.+|.+++++++++|+|+|+|+.|. |.+||++|||..+++|+|+++.+.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP~ 80 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEPI 80 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCCc
Confidence 34678899999999999999999999999999999999995 568999999999999999997543
No 38
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.3e-09 Score=128.06 Aligned_cols=74 Identities=39% Similarity=0.674 Sum_probs=70.8
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 20 qI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
.|+||++|.++.++.|...+||.+||++|.++.+|+.+.|||||.||+|.|+|++.+|+| ||.+|||+-|.+.+
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 499999999999999999999999999999999999999999999999999999999999 99999999996544
No 39
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.91 E-value=6.4e-09 Score=90.90 Aligned_cols=72 Identities=26% Similarity=0.520 Sum_probs=60.3
Q ss_pred EEEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE-EeCCe-----ec-CCCcccccccccCCCEEEEeee
Q 005263 19 IEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL-ICRGK-----VL-KDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 19 MqI~VKtL~-GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRL-IF~GK-----vL-kDdkTLsDYGIedGSTIhLVlR 90 (705)
++|+|+... ......++.+.+||.+||++|+..+|+++..||| +|.|+ .| +|+++|.+|++++|++||++-.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 567777743 3344556999999999999999999999999999 48887 45 7889999999999999999853
No 40
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.90 E-value=9.1e-09 Score=81.90 Aligned_cols=72 Identities=39% Similarity=0.602 Sum_probs=68.7
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 21 I~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
++++++.|+++.+++.+..+|..+|.+|+.+.+++.++|+|.|.|+.|+|+.+|.+|+|..+.+++|+.+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 678888999999999999999999999999999999999999999999999999999999999999998764
No 41
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.74 E-value=3.6e-08 Score=85.95 Aligned_cols=72 Identities=28% Similarity=0.500 Sum_probs=59.5
Q ss_pred EEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-C------eec-CCCcccccccccCCCEEEEe
Q 005263 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-G------KVL-KDDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 19 MqI~VKtL~G--KT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~-G------KvL-kDdkTLsDYGIedGSTIhLV 88 (705)
++|+|..... +.+..++++++||.+||.+|+..+|+|++.|+|.+. . ..| +|+++|.+|++++|.+||+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 6788888765 488899999999999999999999999999999876 2 123 57899999999999999997
Q ss_pred ee
Q 005263 89 VR 90 (705)
Q Consensus 89 lR 90 (705)
=.
T Consensus 82 D~ 83 (87)
T PF14560_consen 82 DT 83 (87)
T ss_dssp E-
T ss_pred eC
Confidence 43
No 42
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.70 E-value=8.9e-08 Score=88.51 Aligned_cols=76 Identities=32% Similarity=0.473 Sum_probs=59.3
Q ss_pred cEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhC-------CCCCCeEEEeCCeecCCCcccccccccCCC------
Q 005263 18 TIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTG-------VLSEQQRLICRGKVLKDDQLLSAYHVEDGH------ 83 (705)
Q Consensus 18 tMqI~VKtL~GK-T~tLeVdpsdTV~eLKekIaektG-------IPpeqQRLIF~GKvLkDdkTLsDYGIedGS------ 83 (705)
.+.|+++..+|+ +..+.+++++||.+||+.|..... ..+..+||||.||+|+|+++|.+|.+..+.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 588999999998 788999999999999999987542 234679999999999999999999987665
Q ss_pred EEEEeeecCC
Q 005263 84 TLHMVVRQPV 93 (705)
Q Consensus 84 TIhLVlRl~g 93 (705)
++||+++...
T Consensus 82 vmHlvvrp~~ 91 (111)
T PF13881_consen 82 VMHLVVRPNA 91 (111)
T ss_dssp EEEEEE-SSS
T ss_pred EEEEEecCCC
Confidence 7899988654
No 43
>PLN02560 enoyl-CoA reductase
Probab=98.68 E-value=3.7e-08 Score=104.80 Aligned_cols=69 Identities=26% Similarity=0.393 Sum_probs=62.0
Q ss_pred EEEEEEeCCCcEE---EEEecCCCCHHHHHHHHHHHhCC-CCCCeEEEeC---C----eecCCCcccccccccCCCEEEE
Q 005263 19 IEIKIKTLDSQTY---TLRVDKQVPVPALKEQIASVTGV-LSEQQRLICR---G----KVLKDDQLLSAYHVEDGHTLHM 87 (705)
Q Consensus 19 MqI~VKtL~GKT~---tLeVdpsdTV~eLKekIaektGI-PpeqQRLIF~---G----KvLkDdkTLsDYGIedGSTIhL 87 (705)
|+|+||..+||.+ +++|+++.||++||++|+++.++ ++++|||++. | +.|+|+++|+|||+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 7899998888887 79999999999999999999986 8999999983 3 4889999999999999998765
No 44
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.54 E-value=2.2e-07 Score=86.45 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=61.3
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccc-------cCCCEEEEeeec
Q 005263 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-------EDGHTLHMVVRQ 91 (705)
Q Consensus 20 qI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGI-------edGSTIhLVlRl 91 (705)
-|.||- +..+|.++++++.||.+||++|+.....|+++|||+..+.+|+|++||+|||+ ++..+|-|.+|.
T Consensus 4 FlmIrR-~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 4 FLMIRR-HKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred EEEEEe-cceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence 344444 34567789999999999999999999999999999977789999999999999 668888888885
No 45
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.48 E-value=2.9e-07 Score=78.85 Aligned_cols=68 Identities=31% Similarity=0.329 Sum_probs=54.7
Q ss_pred EEEEEeCC-CcEEEEEec-CCCCHHHHHHHHHHHhC-CCCCCeEEE--eCCeecCCCcccccccccCCCEEEE
Q 005263 20 EIKIKTLD-SQTYTLRVD-KQVPVPALKEQIASVTG-VLSEQQRLI--CRGKVLKDDQLLSAYHVEDGHTLHM 87 (705)
Q Consensus 20 qI~VKtL~-GKT~tLeVd-psdTV~eLKekIaektG-IPpeqQRLI--F~GKvLkDdkTLsDYGIedGSTIhL 87 (705)
+|.++... .....++++ ++.||.+||+.|++..+ +++++|||. +.|+.|+|+++|.+|||++|++||+
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 45666654 333334554 78999999999999976 578999885 8899999999999999999999886
No 46
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.40 E-value=1.2e-06 Score=65.34 Aligned_cols=67 Identities=39% Similarity=0.544 Sum_probs=61.2
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEee
Q 005263 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 23 VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
|+..+++...+.+.+..||.+||++|.++++++++.++|+++|+.+++...+.+|++.++++|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444688889999999999999999999999999999999999999999998999999999999874
No 47
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.13 E-value=9.1e-06 Score=70.92 Aligned_cols=72 Identities=19% Similarity=0.336 Sum_probs=64.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC-----eecCCCcccccccccCCCEEEEeeec
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-----KVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~G-----KvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
++|+||-.....+++.|+|..+|.+||++|....+++- .|||.|.. ..|.+.++|++|||..+..|.|+...
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 57899998889999999999999999999999999886 99999963 36789999999999999888887654
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.06 E-value=6.8e-06 Score=71.95 Aligned_cols=71 Identities=20% Similarity=0.322 Sum_probs=44.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---eec--CCCcccccccccCCCEEEEe
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KVL--KDDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~G---KvL--kDdkTLsDYGIedGSTIhLV 88 (705)
..|-|.|++.+| ++.|+|++++|+.+||++|++.++++.+.|.|..+- +.| .++++|+++||+.|+.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 468999999754 678899999999999999999999999999886442 245 57899999999999999874
No 49
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00012 Score=66.84 Aligned_cols=79 Identities=18% Similarity=0.374 Sum_probs=73.8
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
...|.|+|+.-++.+..+.|..+.+...|++..+++.|+..+..|++|+|+.+++.+|=.+++.++|+.|.++..+.++
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 5778999998778888999999999999999999999999999999999999999999999999999999999887664
No 50
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=4.1e-05 Score=85.19 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=67.8
Q ss_pred EEEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 19 IEIKIKTLDSQTYTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 19 MqI~VKtL~GKT~tLe-VdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
..|.||+ .|+.|.++ ++.++|+..||.+|...+|++|++||+.++|+.|+|+-.+...+|+++.+|+|+-...
T Consensus 4 ~~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 4 DTVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred ceEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 5688999 58999987 9999999999999999999999999999999999999999999999999999997643
No 51
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.4e-05 Score=68.20 Aligned_cols=71 Identities=25% Similarity=0.337 Sum_probs=63.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEee
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
+++.+...-||+..+.+.+++||.++|+.|+.++|..++..+|---+.+++|.-+|++|.|++|..+.|..
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lelyy 72 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELYY 72 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEee
Confidence 56667777799999999999999999999999999999988887556788999999999999999888764
No 52
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=4.6e-05 Score=81.45 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=61.5
Q ss_pred EEEEEEeC---CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEee
Q 005263 19 IEIKIKTL---DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 19 MqI~VKtL---~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
|.+.|... ....+.|+|+.+..|.+||+.++++.|+|+++.|+||.||.|.|+.++..+.+..-+.+|+++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 44556553 234577899999999999999999999999999999999999999999999998888888884
No 53
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=2.6e-05 Score=72.23 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=37.2
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfav 143 (705)
..|++++++|+++++|+++|++|+ ++|||+++|+|+|+.
T Consensus 8 ~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~ 47 (128)
T KOG0003|consen 8 LTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (128)
T ss_pred eeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcc
Confidence 789999999999999999999999 999999999999973
No 54
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=3.6e-05 Score=75.14 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=40.4
Q ss_pred cccC--CCCCCccccccccccccccccccc-CCCCCchhHHHHHHHHh
Q 005263 101 HNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (705)
Q Consensus 101 qI~v--~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfavL~ 145 (705)
+||+ +.+++++++|..++||+++|.+|| +||||+|||||||+-..
T Consensus 2 ~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~q 49 (156)
T KOG0004|consen 2 QIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (156)
T ss_pred ccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcc
Confidence 4555 788899999999999999999999 99999999999999543
No 55
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=97.35 E-value=2.1e-05 Score=71.71 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=54.2
Q ss_pred cccccCCCEEEEeeecCCCCCCCCccccC--CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 76 AYHVEDGHTLHMVVRQPVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 76 DYGIedGSTIhLVlRl~gg~sts~~qI~v--~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
-|++.+-.++|+++++.. .|++++ ..|++++++|.+++||.+||.+|+ ++|+|+++|+|+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~-----~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~ 73 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYD-----TMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWN 73 (103)
T ss_pred ccccCCcceeEEeeccCC-----CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEEC
Confidence 456777889999999755 577766 789999999999999999999999 89999999999986
No 56
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.22 E-value=0.00059 Score=62.40 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=51.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecCCCccccccccc
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLKDDQLLSAYHVE 80 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~G--KvLkDdkTLsDYGIe 80 (705)
|-|.||- ...+|.++.+++.||.+||.+++..+.-|+++|||+.-. .+|+|.++|.|||+.
T Consensus 3 ~f~~VrR-~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRR-HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeee-cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 4455655 356778899999999999999999999999999998743 678999999999763
No 57
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.14 E-value=0.00098 Score=57.56 Aligned_cols=71 Identities=24% Similarity=0.349 Sum_probs=51.9
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---C---CeEEE-eCCeecCCCcccccccccCCCEEEEe
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---E---QQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPp---e---qQRLI-F~GKvLkDdkTLsDYGIedGSTIhLV 88 (705)
.++|+|...+++.+.+.+..+.+|.+|...|.+..+.+. . ..+|. -+|+.|+++++|++|+|.+|+.|+|.
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence 467888886678999999999999999999999887643 2 24555 67899999999999999999999873
No 58
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=9.6e-05 Score=62.36 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=38.6
Q ss_pred cCCCCCCccccccccccccccccccc-CCCCCchhHHHHHHHH
Q 005263 103 LPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (705)
Q Consensus 103 ~v~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfavL 144 (705)
+.++++.+-++++++|.|+.+|..+. ++||||.+|||||+.-
T Consensus 6 ktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gk 48 (70)
T KOG0005|consen 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGK 48 (70)
T ss_pred eeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccc
Confidence 34889999999999999999999999 9999999999999743
No 59
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.88 E-value=0.0082 Score=51.49 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=62.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEE--eCCeecCCC--cccccccccCCCEEEEe
Q 005263 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLI--CRGKVLKDD--QLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 15 ~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeq-QRLI--F~GKvLkDd--kTLsDYGIedGSTIhLV 88 (705)
......|.||..+|+.+...+.+++||.+|...|..+...+... -+|+ |--+.|.++ ++|.++++.+..+|+|-
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 34568999999999999999999999999999999888777665 6776 667888543 79999999999999873
No 60
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=96.57 E-value=0.00011 Score=62.28 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=35.6
Q ss_pred ccCCCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 102 NLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 102 I~v~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
+++-++++++++|++++||++||.+|+ ++|+|+++|+|+|+
T Consensus 3 i~vk~~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~ 44 (74)
T cd01793 3 LFVRAQNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA 44 (74)
T ss_pred EEEECCCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC
Confidence 344334678899999999999999999 99999999999987
No 61
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.00035 Score=75.34 Aligned_cols=78 Identities=27% Similarity=0.365 Sum_probs=61.8
Q ss_pred CCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCC--CCCeEEEeCCeecCCCccccccccc--CCCEEEEee
Q 005263 16 ETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVL--SEQQRLICRGKVLKDDQLLSAYHVE--DGHTLHMVV 89 (705)
Q Consensus 16 ~~tMqI~VKtL~G--KT~tLeVdpsdTV~eLKekIaektGIP--peqQRLIF~GKvLkDdkTLsDYGIe--dGSTIhLVl 89 (705)
+..+.++||..+. +.+.|+.+.+.||++||..++..+--. ..+|||||.||.|.|...|.|.-+| ..+++||++
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvc 86 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVC 86 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 3457788888764 456678888999999999999987532 3689999999999999999998654 467888888
Q ss_pred ecCC
Q 005263 90 RQPV 93 (705)
Q Consensus 90 Rl~g 93 (705)
..+.
T Consensus 87 nsk~ 90 (391)
T KOG4583|consen 87 NSKE 90 (391)
T ss_pred CCCC
Confidence 6543
No 62
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.47 E-value=0.0059 Score=55.65 Aligned_cols=57 Identities=26% Similarity=0.297 Sum_probs=43.6
Q ss_pred EEEEeCC-CcEEEEEec--CCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCCCcccccc
Q 005263 21 IKIKTLD-SQTYTLRVD--KQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAY 77 (705)
Q Consensus 21 I~VKtL~-GKT~tLeVd--psdTV~eLKekIaektG--IPpeqQRLIF~GKvLkDdkTLsDY 77 (705)
|.|+..+ -..+.++|. .+.||..||++|.++.. ..-.++||||+||.|.|...|...
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 4555544 234667777 78999999999999983 444678999999999998877654
No 63
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.29 E-value=0.026 Score=48.75 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=59.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---CcccccccccCCCEEEE
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI--F~GKvLkD---dkTLsDYGIedGSTIhL 87 (705)
...+|.||..+|+.+...+..++||.+|.+-|....+......+|+ |-.|.|.+ +++|.++++....+|.|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 4578999999999999999999999999999976666666667776 55677853 47999999988888876
No 64
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.0084 Score=61.60 Aligned_cols=75 Identities=25% Similarity=0.338 Sum_probs=61.3
Q ss_pred CcEEEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCC--CEEEEeeec
Q 005263 17 TTIEIKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDG--HTLHMVVRQ 91 (705)
Q Consensus 17 ~tMqI~VKtL-~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedG--STIhLVlRl 91 (705)
....++++.. .++.+.+.+...+|+.++|.++..+.++.+-.|+++|.|++|-|...|..|+|+.| ..|.+++..
T Consensus 144 ~e~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviVlq 221 (231)
T KOG0013|consen 144 TEPILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIVLQ 221 (231)
T ss_pred CCcchHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEEecc
Confidence 3333444333 46788899999999999999999999999999999999999999999999999999 444444433
No 65
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.13 E-value=0.023 Score=56.47 Aligned_cols=76 Identities=22% Similarity=0.269 Sum_probs=60.0
Q ss_pred EEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeC-Ceec--CCCcccccccccCC----CEEE
Q 005263 19 IEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICR-GKVL--KDDQLLSAYHVEDG----HTLH 86 (705)
Q Consensus 19 MqI~VKtL~G----KT~tLeVdpsdTV~eLKekIaektGIPpeqQ-RLIF~-GKvL--kDdkTLsDYGIedG----STIh 86 (705)
|+|+|++++| .++.+.+..+.||.+|+.+|.+.++++...| .|.+. ++.| .++..+..+.-.+. -+|+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 6899999999 5888999999999999999999999999884 45553 4555 56666777655443 3788
Q ss_pred EeeecCCC
Q 005263 87 MVVRQPVP 94 (705)
Q Consensus 87 LVlRl~gg 94 (705)
|++++.++
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 88888775
No 66
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=96.00 E-value=0.00045 Score=58.76 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=36.6
Q ss_pred cCCCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 103 LPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 103 ~v~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
+...|++++++|.+++||.+||.+|+ .+|+|+++|+|+|+
T Consensus 4 k~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~ 44 (70)
T cd01794 4 RLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFS 44 (70)
T ss_pred EcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 34678899999999999999999999 89999999999985
No 67
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.89 E-value=0.055 Score=46.35 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=54.5
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---CcccccccccCCCEEEEe
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI--F~GKvLkD---dkTLsDYGIedGSTIhLV 88 (705)
+.+|.||..+|+.+......++||.+|.+-|.....- ....+|+ |-.|.|.| +++|.++|+. .+++.+.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 4679999999999999999999999999999876543 4556676 55677854 7899999998 4555443
No 68
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.63 E-value=0.034 Score=47.54 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=46.9
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEE
Q 005263 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (705)
Q Consensus 26 L~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhL 87 (705)
.+++.+.+.|.+++++.++-++..+++++.+++-.|.|++|.|+-+.++.-.|+-+|.++.|
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 46889999999999999999999999999999999999999999999999999999999875
No 69
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=95.62 E-value=0.00066 Score=57.48 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=35.4
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.++++|++++||++||.+|+ ++|+|+++|+|+|+
T Consensus 8 ~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 46 (74)
T cd01807 8 LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK 46 (74)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 567888999999999999999999 99999999999987
No 70
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.017 Score=52.56 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=69.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
..|.++|..-++.++.+.|..+.+...|.+..+...|-..+..|++|+|+.++-++|-.|++.++++.|.++..+.++
T Consensus 23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcC
Confidence 356777776678899999999999999999999999999999999999999999999999999999998887765543
No 71
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.55 E-value=0.083 Score=45.96 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=57.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---CcccccccccCCCEEEE
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI--F~GKvLkD---dkTLsDYGIedGSTIhL 87 (705)
...+|.||..+|+.+...+..++||.+|++-|....+.. ....|+ |--|.+.+ ++||.++|+.+..+|+|
T Consensus 3 ~~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 3 TETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred cEEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 347899999999999999999999999999998765433 456676 56788853 58999999998888876
No 72
>PTZ00044 ubiquitin; Provisional
Probab=95.54 E-value=0.00069 Score=57.11 Aligned_cols=38 Identities=8% Similarity=0.241 Sum_probs=35.6
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|++++++|.+++||+.||.+|+ ..|+|+++|||+|+
T Consensus 8 ~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (76)
T PTZ00044 8 LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYS 46 (76)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 678889999999999999999999 89999999999985
No 73
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.50 E-value=0.089 Score=46.09 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=54.8
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEE--eCCeecC-CCcccccccccCCCEE
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL-SEQQRLI--CRGKVLK-DDQLLSAYHVEDGHTL 85 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIP-peqQRLI--F~GKvLk-DdkTLsDYGIedGSTI 85 (705)
..+|.||..+|+.+...+..++||.+|++-|....+-+ .....|+ |-.|.|. +++||.|.|+.+...+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 57899999999999999999999999999999876432 2455665 7788885 4789999999864433
No 74
>COG5417 Uncharacterized small protein [Function unknown]
Probab=95.16 E-value=0.097 Score=46.33 Aligned_cols=70 Identities=21% Similarity=0.438 Sum_probs=56.7
Q ss_pred cEEEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCCeecCCCcccccccccCCCEEEE
Q 005263 18 TIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (705)
Q Consensus 18 tMqI~VKt--L~GKT~tLeVdpsdTV~eLKekIaektGIPp-----eqQRLIF~GKvLkDdkTLsDYGIedGSTIhL 87 (705)
.|+|+|.. -+|++|.+++....+|..|-..+.+...+.. ...|..-++++|.++..|.+|+|.+|+.+.+
T Consensus 4 ~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 4 HIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 45566544 3589999999999999999988877665432 3458889999999999999999999998865
No 75
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=95.06 E-value=0.0014 Score=55.47 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=34.6
Q ss_pred CCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 106 tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.|+++.++|+++.||.+||.+|+ .+|+|+++|+|+|+
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~ 45 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYN 45 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 67788999999999999999999 89999999999986
No 76
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=95.01 E-value=0.037 Score=58.35 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=51.7
Q ss_pred EEEEEEeCCC-cEEE-EEecCCCCHHHHHHHHHHH-hCCCCCCeEE----EeCCeecCCCcccccccccCCCEEEE
Q 005263 19 IEIKIKTLDS-QTYT-LRVDKQVPVPALKEQIASV-TGVLSEQQRL----ICRGKVLKDDQLLSAYHVEDGHTLHM 87 (705)
Q Consensus 19 MqI~VKtL~G-KT~t-LeVdpsdTV~eLKekIaek-tGIPpeqQRL----IF~GKvLkDdkTLsDYGIedGSTIhL 87 (705)
|+|+++...+ -.++ .+.....||.|++++|..+ .++.+..+|+ .-+||.|.|+.+|++|+..++.+|.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 6788877654 2344 5677889999999777655 4677755444 34699999999999999999977654
No 77
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=94.96 E-value=0.0016 Score=55.20 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=35.9
Q ss_pred CCCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 104 PGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 104 v~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
...|++++++|++++||++||.+|+ +.|+|+++|+|+|+
T Consensus 5 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 44 (74)
T cd01810 5 NDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFE 44 (74)
T ss_pred CCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 3678889999999999999999999 89999999999976
No 78
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.71 E-value=0.21 Score=44.42 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=58.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecC--------CCcccccccccCCCEEE
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLK--------DDQLLSAYHVEDGHTLH 86 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~G--KvLk--------DdkTLsDYGIedGSTIh 86 (705)
..++|.||..+|+.+.-.+..++||.+|..-|.. .+..++...|+++= |.|. .+.||.+.||.+..+|.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 4689999999999999999999999999999964 45566788888654 7775 36799999999887776
Q ss_pred E
Q 005263 87 M 87 (705)
Q Consensus 87 L 87 (705)
|
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 6
No 79
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.087 Score=54.35 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=56.9
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCC--e---ec-CCCcccccccccCCCEEEEeee
Q 005263 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRG--K---VL-KDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 19 MqI~VKtL~GK-T~tLeVdpsdTV~eLKekIaektGIPpeqQRLI-F~G--K---vL-kDdkTLsDYGIedGSTIhLVlR 90 (705)
++|+|.+..-+ ....+..+++||.+||.|++.++|.+++.++|. |+| | .| +++..|..|+..+|..||++=.
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 56666654322 233467789999999999999999999999884 655 2 34 5678999999999999999864
Q ss_pred cC
Q 005263 91 QP 92 (705)
Q Consensus 91 l~ 92 (705)
..
T Consensus 82 ~~ 83 (234)
T KOG3206|consen 82 NA 83 (234)
T ss_pred Cc
Confidence 43
No 80
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=94.41 E-value=0.0025 Score=53.33 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=35.7
Q ss_pred CCCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 104 PGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 104 v~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
...|+.++++|++++||+.||.+|+ ++|+|+++|+|+|+
T Consensus 5 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~ 44 (70)
T cd01798 5 TNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA 44 (70)
T ss_pred cCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 3578889999999999999999999 89999999999886
No 81
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=94.08 E-value=0.0041 Score=54.01 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=33.2
Q ss_pred CCCCC-ccc-cccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRS-HGS-HVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrt-iTl-~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+. +.+ .+.+++||..||.+|+ ++|+|+++|||+|.
T Consensus 8 ~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~ 48 (78)
T cd01797 8 MDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYR 48 (78)
T ss_pred CCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeC
Confidence 55665 567 4899999999999999 89999999999986
No 82
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=94.07 E-value=0.0048 Score=53.37 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=33.9
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..+.++++.|.+++||+.||.+++ ++|||+++||| |.
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~ 47 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VI 47 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-Ec
Confidence 567788899999999999999999 99999999999 64
No 83
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.97 E-value=0.43 Score=42.66 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=62.1
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---CCcccccccccCCCEEEEee
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI--F~GKvLk---DdkTLsDYGIedGSTIhLVl 89 (705)
...-+|.||..+|+.+.-....++++.+|-.-|.. .+.+++...|+ |--|.|. .+.||.+.|+.+..+|.|--
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 34578999999999999999999999999999988 57788889987 5577773 35899999999999988743
No 84
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.86 E-value=0.45 Score=41.94 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=60.8
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---CCcccccccccCCCEEEEe
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI--F~GKvLk---DdkTLsDYGIedGSTIhLV 88 (705)
+...+|.||..+|+.+.-....++++.+|..-|..+ +.+.+..+|+ |--|.+. .+.+|.+.|+....+|.|-
T Consensus 2 ~~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 2 EPISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 346899999999999999999999999999999875 7777788887 5678774 3579999999988888774
No 85
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=93.81 E-value=0.0047 Score=53.21 Aligned_cols=38 Identities=11% Similarity=0.007 Sum_probs=34.4
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||.+||.+|+ +.|+|+++|||+|.
T Consensus 9 ~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~ 47 (73)
T cd01791 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW 47 (73)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC
Confidence 457778889999999999999998 77999999999987
No 86
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=93.75 E-value=0.0044 Score=52.98 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=35.3
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|++++||++||.+|+ ..|+|++.|+|+|.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~ 43 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE 43 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 467889999999999999999999 89999999999987
No 87
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=92.97 E-value=0.0066 Score=50.62 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.6
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.++.||+.||.+++ +.|+|++.|||+|+
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~ 46 (76)
T cd01806 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEEC
Confidence 567778899999999999999999 88999999999986
No 88
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=92.84 E-value=0.0085 Score=51.56 Aligned_cols=37 Identities=8% Similarity=-0.010 Sum_probs=33.8
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIf 141 (705)
..|+.+.++|++++||++||.+|+ ..|+|+++|+|||
T Consensus 7 ~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 7 WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe
Confidence 356778899999999999999999 8999999999998
No 89
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=92.73 E-value=0.0069 Score=52.29 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=34.4
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|+++.||++||.+|+ +.++++++|||+|+
T Consensus 9 ~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~ 47 (78)
T cd01804 9 TTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHR 47 (78)
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEEC
Confidence 557778899999999999999998 78999999999977
No 90
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=92.38 E-value=0.0092 Score=49.75 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.6
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||+.||.+|+ ..|+|++.|+|+|+
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~ 46 (76)
T cd01803 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_pred CCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 567788899999999999999999 89999999999974
No 91
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=91.97 E-value=0.01 Score=49.98 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=34.7
Q ss_pred CCCCCccccccccccccccccccc-CCCC--CchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGV--PSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGI--PpdqQRLIfa 142 (705)
..|+.++++|.+++||..||.+|+ .+|+ |+++|+|+|+
T Consensus 8 ~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~ 48 (77)
T cd01805 8 LKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS 48 (77)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC
Confidence 567788899999999999999999 8899 9999999985
No 92
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=90.90 E-value=0.015 Score=48.01 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=34.7
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.+++.++++|..||.+++ ..|+|++.|+|+|+
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (72)
T cd01809 8 LDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS 46 (72)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 567788899999999999999999 88999999999985
No 93
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=90.59 E-value=1.5 Score=37.08 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=44.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC----CCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 30 TYTLRVDKQVPVPALKEQIASVTGV----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 30 T~tLeVdpsdTV~eLKekIaektGI----PpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
...++++...||.+|++++.++++- .....++..+|+..+ .++-|++|+.|.++-...
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~ 78 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVS 78 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCC
Confidence 4567777789999999999987642 234567778898887 456789999999986543
No 94
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=90.59 E-value=1.1 Score=37.88 Aligned_cols=68 Identities=26% Similarity=0.281 Sum_probs=52.5
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEe----CC--eecCCCccccccccc--CCCEEEEeee
Q 005263 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLIC----RG--KVLKDDQLLSAYHVE--DGHTLHMVVR 90 (705)
Q Consensus 23 VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeq-QRLIF----~G--KvLkDdkTLsDYGIe--dGSTIhLVlR 90 (705)
|+.+||....++|+++.|+.+|=++|+++.++...+ .=|.| +| .-|+.+++|.++... ...++++.++
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvk 77 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVK 77 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence 678899999999999999999999999999987533 46777 22 357889999999777 3445555543
No 95
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=90.21 E-value=1.5 Score=37.86 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=47.9
Q ss_pred cEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC--CCeEEEeCCeecCCCcccccccccCCCEEEE
Q 005263 18 TIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-VLS--EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (705)
Q Consensus 18 tMqI~VKtL~------G-KT~tLeVdpsdTV~eLKekIaektG-IPp--eqQRLIF~GKvLkDdkTLsDYGIedGSTIhL 87 (705)
+|+|+|+... | +...+++....||.+|++.|..+.. +.. ....+..+|+... .++-|++|++|.+
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai 75 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAI 75 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEE
Confidence 4888998873 3 4566788888999999999977651 111 1124667787764 3456788999998
Q ss_pred eeec
Q 005263 88 VVRQ 91 (705)
Q Consensus 88 VlRl 91 (705)
+-..
T Consensus 76 ~Ppv 79 (82)
T PLN02799 76 IPPI 79 (82)
T ss_pred eCCC
Confidence 7543
No 96
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=90.06 E-value=0.031 Score=48.24 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=33.9
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHH--HHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQI--VSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRL--Ifa 142 (705)
..|+.++++|+++.||.+||.+|+ +.|+|+++||| +|.
T Consensus 10 ~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~ 50 (80)
T cd01792 10 LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDS 50 (80)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccC
Confidence 567888899999999999999998 78999999999 763
No 97
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=89.68 E-value=1.5 Score=39.31 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=35.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 005263 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (705)
Q Consensus 30 T~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GK 66 (705)
++.|+|.+..+..+|+++|.++.++|+++.+|.|+..
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 8999999999999999999999999999999999864
No 98
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=89.10 E-value=0.59 Score=40.89 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=46.5
Q ss_pred ecCCCCHHHHHHHHHHHhC-CCCCCeEEEeCCeecCCCcccccc-cccCCCEEEEeee
Q 005263 35 VDKQVPVPALKEQIASVTG-VLSEQQRLICRGKVLKDDQLLSAY-HVEDGHTLHMVVR 90 (705)
Q Consensus 35 VdpsdTV~eLKekIaektG-IPpeqQRLIF~GKvLkDdkTLsDY-GIedGSTIhLVlR 90 (705)
|.+.++|.+||+.|..... ..-....|.++|+.|+|...|.++ +++++.+|.|+.+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 5688999999999988754 333556889999999999999988 5899999999864
No 99
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=89.04 E-value=0.038 Score=45.65 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=32.8
Q ss_pred CCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 107 GrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
|+.+.+++.++.||++||.+|+ ..|+|++.|+|+|.
T Consensus 9 g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 45 (71)
T cd01812 9 GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK 45 (71)
T ss_pred CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC
Confidence 6667789999999999999999 89999999999975
No 100
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=88.68 E-value=0.66 Score=51.35 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=60.9
Q ss_pred EEEEEeC--CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCC--cccccccccCCCEEEEeeec
Q 005263 20 EIKIKTL--DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD--QLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 20 qI~VKtL--~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDd--kTLsDYGIedGSTIhLVlRl 91 (705)
.++|.+. ..+++.++|..+.....|+..+...++++.+..-|+|+++.|.+. ..|..||++++++|.+-.+.
T Consensus 2 ~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks 77 (380)
T KOG0012|consen 2 SLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKS 77 (380)
T ss_pred eEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCC
Confidence 3444333 568889999999999999999999999999999999999999654 78999999999998876543
No 101
>PRK06437 hypothetical protein; Provisional
Probab=87.65 E-value=3.6 Score=35.01 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=44.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeee
Q 005263 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 27 ~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
.++...++++...||.+|-++ ++++++...+..+|+.+. .++-|++|+.|.++--
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEV 63 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEec
Confidence 456677888888999887654 488888888999999997 5677889999998753
No 102
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=87.63 E-value=4.3 Score=34.58 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=46.0
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeee
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
+|+|++... .+...++++...||.+|.+++ +++.+...+..+|+.+.+ ++-|++|+.|.++--
T Consensus 4 mm~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~ 66 (70)
T PRK08364 4 MIRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEcc
Confidence 356666432 235677888889999988765 677777788899998853 666889999988754
No 103
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=87.29 E-value=0.021 Score=47.12 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=34.8
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||..||.+|. ..++|++.|+|+|.
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~ 41 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYN 41 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEET
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeee
Confidence 467788999999999999999999 88899999999986
No 104
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=87.05 E-value=0.06 Score=47.44 Aligned_cols=39 Identities=5% Similarity=-0.062 Sum_probs=35.9
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfav 143 (705)
..|+.+.+.|.++++|..||.++. +.|+++++|||+|+.
T Consensus 19 ~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G 58 (87)
T cd01763 19 QDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDG 58 (87)
T ss_pred CCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECC
Confidence 567888999999999999999998 999999999999974
No 105
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=86.82 E-value=5.5 Score=38.64 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=55.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeC--C----eecCCCccccccccc-CCCEEEEe
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICR--G----KVLKDDQLLSAYHVE-DGHTLHMV 88 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQ-RLIF~--G----KvLkDdkTLsDYGIe-dGSTIhLV 88 (705)
..+.|.|..++|.+..+.++..+|+.+|.+.|+++.|+....- -|.+. + ..|+..++|.+...+ ....+++-
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 3578999999999999999999999999999999999954322 34432 1 346667777776655 34455555
Q ss_pred eecC
Q 005263 89 VRQP 92 (705)
Q Consensus 89 lRl~ 92 (705)
+|.-
T Consensus 82 ~r~~ 85 (207)
T smart00295 82 VKFY 85 (207)
T ss_pred EEEc
Confidence 5543
No 106
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=86.57 E-value=3 Score=37.14 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=49.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCCe-----ecCCCccccc----ccccCCCEEEEe
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRGK-----VLKDDQLLSA----YHVEDGHTLHMV 88 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPp-eqQRLIF~GK-----vLkDdkTLsD----YGIedGSTIhLV 88 (705)
|+|++.. ++.++.+.+.++.+..+|+++|.+++++.. ....|-|... .|..+.-|.+ |.....++|.|.
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~ 79 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLL 79 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEE
Confidence 4566655 678999999999999999999999999865 5567777542 2233333444 444456677666
Q ss_pred ee
Q 005263 89 VR 90 (705)
Q Consensus 89 lR 90 (705)
+.
T Consensus 80 v~ 81 (82)
T cd06407 80 VH 81 (82)
T ss_pred ee
Confidence 53
No 107
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=86.04 E-value=0.057 Score=45.40 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=31.8
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+ .+++++++.||..||.+|+ +.|+++++|+|+|+
T Consensus 8 ~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~ 45 (71)
T cd01808 8 PKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFA 45 (71)
T ss_pred CCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 3454 3789999999999999998 78999999999875
No 108
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.19 E-value=0.092 Score=58.24 Aligned_cols=48 Identities=6% Similarity=0.181 Sum_probs=40.0
Q ss_pred cCCCCCCccccccccccccccccccc-CCC---CCchhHHHHHH--------HHhhcCCC
Q 005263 103 LPGTSRSHGSHVAPSVVIETFNLPDR-GDG---VPSEISQIVSA--------VLGSFGLS 150 (705)
Q Consensus 103 ~v~tGrtiTl~V~pSdTIe~LKvkIq-keG---IPpdqQRLIfa--------vL~s~G~~ 150 (705)
+...|+.+.++|++++||.+||.+|+ +.| +|+++|+|||. .|..+|+.
T Consensus 6 Ktl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~ 65 (378)
T TIGR00601 6 KTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIK 65 (378)
T ss_pred EeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCC
Confidence 33677889999999999999999998 666 99999999998 35666653
No 109
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=85.17 E-value=0.1 Score=46.28 Aligned_cols=40 Identities=0% Similarity=-0.129 Sum_probs=29.9
Q ss_pred cCCCCCC--ccccccccccccccccccc--CC-CCCchhHHHHHH
Q 005263 103 LPGTSRS--HGSHVAPSVVIETFNLPDR--GD-GVPSEISQIVSA 142 (705)
Q Consensus 103 ~v~tGrt--iTl~V~pSdTIe~LKvkIq--ke-GIPpdqQRLIfa 142 (705)
+..+++. +.++++++.||..||.+|. .. ..++++|||||+
T Consensus 7 K~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~ 51 (79)
T cd01790 7 KSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYS 51 (79)
T ss_pred ECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEc
Confidence 3345555 4556689999999999998 22 355799999997
No 110
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=84.89 E-value=3.5 Score=35.11 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=39.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~G 65 (705)
++|+++. ++.++.+.+....|..+|+.+|.+++++.....+|-|..
T Consensus 2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 5677777 678899999999999999999999999887778888875
No 111
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=84.78 E-value=4.8 Score=33.50 Aligned_cols=57 Identities=7% Similarity=0.220 Sum_probs=40.9
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 27 ~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
+|+.+.+ + ..||.+|.+.+ ++..+...+.++++.+. .....++-+++||.|.++--.
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V 62 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPM 62 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEec
Confidence 6777776 3 45888888765 56666667788998886 334456778999999987543
No 112
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=84.17 E-value=0.14 Score=47.71 Aligned_cols=34 Identities=6% Similarity=-0.010 Sum_probs=31.8
Q ss_pred Cccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 109 tiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..+++|.+++||.++|.+|+ +.+++|++|+|+|+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d 50 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID 50 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec
Confidence 45688999999999999999 99999999999998
No 113
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=84.14 E-value=0.32 Score=52.81 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEec---C--CCCHHHHHHHHHH----------HhCCCCCCeE-----EEeCCeecCCC
Q 005263 12 AESSETTIEIKIKTLDSQTYTLRVD---K--QVPVPALKEQIAS----------VTGVLSEQQR-----LICRGKVLKDD 71 (705)
Q Consensus 12 se~~~~tMqI~VKtL~GKT~tLeVd---p--sdTV~eLKekIae----------ktGIPpeqQR-----LIF~GKvLkDd 71 (705)
.......|.|++|.+-.-.+.|.+. + +.+|.+||..+++ ++++|.+..+ |+|+-|.+-|.
T Consensus 72 aPgs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ 151 (309)
T PF12754_consen 72 APGSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDS 151 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCc
Confidence 3344567899999986666554332 3 5889999999999 8999999988 99999999999
Q ss_pred cccccccc
Q 005263 72 QLLSAYHV 79 (705)
Q Consensus 72 kTLsDYGI 79 (705)
++|.+..-
T Consensus 152 ktl~e~l~ 159 (309)
T PF12754_consen 152 KTLAEVLA 159 (309)
T ss_dssp --------
T ss_pred CcHHHHHh
Confidence 99988753
No 114
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=83.96 E-value=4.8 Score=36.70 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=45.6
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC----C-eecC-CCcccccccccCCCEEEEeeecCCC
Q 005263 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR----G-KVLK-DDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 29 KT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~----G-KvLk-DdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
..++..+...+||..|++.+.+.+.| .++-||--. + ..|. .+.||.|.+|.+|-+|.+=.|...+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 36777899999999999999999999 677888532 2 2464 4679999999999999888776543
No 115
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=83.42 E-value=2.8 Score=37.91 Aligned_cols=45 Identities=16% Similarity=0.097 Sum_probs=39.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC---CeEEEeC
Q 005263 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE---QQRLICR 64 (705)
Q Consensus 20 qI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpe---qQRLIF~ 64 (705)
.+++|...|+++.+.+.++..+.+|++.|.++.|+... ...|.|-
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 46788999999999999999999999999999998873 5566663
No 116
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=82.55 E-value=0.12 Score=45.41 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=23.1
Q ss_pred cccccccccccc-C--CCCC-chhHHHHHH
Q 005263 117 SVVIETFNLPDR-G--DGVP-SEISQIVSA 142 (705)
Q Consensus 117 SdTIe~LKvkIq-k--eGIP-pdqQRLIfa 142 (705)
++||+.||.+|+ + +|++ +++|||||+
T Consensus 20 ~~TV~~LK~kI~~~~~egi~~~dqQrLIy~ 49 (75)
T cd01815 20 GYQVSTLKQLIAAQLPDSLPDPELIDLIHC 49 (75)
T ss_pred cCcHHHHHHHHHHhhccCCCChHHeEEEeC
Confidence 789999999998 5 6785 999999997
No 117
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=82.48 E-value=9.5 Score=32.81 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=42.2
Q ss_pred EEEEEecCC-CCHHHHHHHHHHHhC-C-C-CCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 30 TYTLRVDKQ-VPVPALKEQIASVTG-V-L-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 30 T~tLeVdps-dTV~eLKekIaektG-I-P-peqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
...+++... .||.+|++.+.+++. + . ....++..+++.+.+ +.-|++|+.|.++-...
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~Ppvs 78 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVS 78 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCC
Confidence 346788766 899999999998864 1 1 133466778887774 56788999999885443
No 118
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=82.24 E-value=7.7 Score=33.77 Aligned_cols=61 Identities=8% Similarity=0.110 Sum_probs=42.9
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCC-----C------CCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 29 QTYTLRVDKQVPVPALKEQIASVTGV-----L------SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 29 KT~tLeVdpsdTV~eLKekIaektGI-----P------peqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
....+++. ..||.+|++.|.+++.- - -....+..+|+..+++.. +-|++|+.|.++-...+
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsG 87 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSG 87 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcC
Confidence 34667776 89999999999887641 0 123567778888765432 56899999999865433
No 119
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=82.16 E-value=3.3 Score=37.71 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=46.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 30 T~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
.+...++-..++..||+.++.+.++..+.-.+...+..|+.+++|-|-+|+-..++.+.+...
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi~ 66 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQIK 66 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEEE
Confidence 455677788999999999999999999999999999889999999999999888888877543
No 120
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=81.90 E-value=3.9 Score=34.58 Aligned_cols=56 Identities=14% Similarity=0.382 Sum_probs=40.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeee
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
|+|+| +++ .++++.+.|+.+||.++.... =.+||+|=..+++ +-+++|+.|.++.|
T Consensus 1 M~I~v---N~k--~~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~~d-----~~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKV---NEK--EIETEENTTLFELRKESKPDA------DIVILNGFPTKED-----IELKEGDEVFLIKK 56 (57)
T ss_pred CEEEE---CCE--EEEcCCCcCHHHHHHhhCCCC------CEEEEcCcccCCc-----cccCCCCEEEEEeC
Confidence 45555 344 456777899999999876532 3789999888775 55567888888754
No 121
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=81.09 E-value=0.1 Score=41.48 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=31.1
Q ss_pred CCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 108 rtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
+.+.++|.++.||+.||.++. ..|+|++.|+|+|.
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~ 45 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK 45 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 456788999999999999999 88999999999875
No 122
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=78.40 E-value=9.9 Score=34.58 Aligned_cols=47 Identities=11% Similarity=0.267 Sum_probs=38.3
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GK 66 (705)
.|+|+|.. .+.++.+.|.++.+..+|.++|.+++++. ...+|-|...
T Consensus 2 ~ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 2 KIRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred cEEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 46777775 67899999999999999999999999985 4556666554
No 123
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=77.37 E-value=9.5 Score=32.44 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=39.4
Q ss_pred cEEEEEEeCCCcEEE-EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 005263 18 TIEIKIKTLDSQTYT-LRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (705)
Q Consensus 18 tMqI~VKtL~GKT~t-LeVdpsdTV~eLKekIaektGIPpeqQRLIF~G 65 (705)
+++|+++.- +..+. +.+..+.+..+|+.+|+++++.+....+|.|..
T Consensus 1 t~~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYG-GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEET-TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CEEEEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 467888774 55555 899999999999999999999998888998864
No 124
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=75.70 E-value=8.6 Score=33.67 Aligned_cols=65 Identities=15% Similarity=0.317 Sum_probs=52.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEE-eCCeecCCCcccccccccCCCEEEEeeec
Q 005263 27 DSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 27 ~GKT~tLeVdpsdTV~eLKekIaektG---IPpeqQRLI-F~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
+|+...++.+.+..+--+.++--+..+ -|++...|- -.|.+|+-++.+.|||+.++.+++|.++-
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 677788888888887777777666553 677777665 45889999999999999999999998864
No 125
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=75.00 E-value=11 Score=31.41 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=48.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 30 TYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 30 T~tLeVdpsdTV~eLKekIaektGI--PpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
...+.+....||.+|.+++..++.- ..+...+..+|+.+.+ ...++-+++|+.|.++-...
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvs 75 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVS 75 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCC
Confidence 5667888999999999999887631 3366788999999988 36677889999999986543
No 126
>smart00455 RBD Raf-like Ras-binding domain.
Probab=74.41 E-value=8.1 Score=33.35 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=40.6
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 005263 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (705)
Q Consensus 21 I~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~G 65 (705)
+.|-..+|+...+.+.+..||.++-+++.+|.|+.++.-.|++.|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456678899999999999999999999999999999998888855
No 127
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.34 E-value=5.8 Score=43.91 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=45.7
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC---Ceec-----CCCcccccccccCCCEEEEe
Q 005263 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICR---GKVL-----KDDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 33 LeVdpsdTV~eLKekIaektGIPpeqQRLIF~---GKvL-----kDdkTLsDYGIedGSTIhLV 88 (705)
.-|+-.-||.+||+++..+.|+.+.++||+|- ||.- +-++.|..|+|++|+.+.+-
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 34556789999999999999999999999873 4432 34678999999999988764
No 128
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=72.22 E-value=6.2 Score=44.28 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=52.9
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEE--eCCeecC-CCcccccccccCCCEE
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLI--CRGKVLK-DDQLLSAYHVEDGHTL 85 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPp-eqQRLI--F~GKvLk-DdkTLsDYGIedGSTI 85 (705)
+-.|.||..||+.+.+.++...||.+|+..|.....-.. ..+.|+ |--|.|. |+.||++.||.+-..|
T Consensus 305 tTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 305 TTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred cceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 456788888999999999999999999999988765433 345555 4568885 5689999999775443
No 129
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=71.73 E-value=12 Score=31.60 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=36.4
Q ss_pred EEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 005263 20 EIKIKTLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRG 65 (705)
Q Consensus 20 qI~VKtL~GKT~tLeVd-psdTV~eLKekIaektGIPpeqQRLIF~G 65 (705)
+|+++. ++..+.+.+. ...+..+|+.+|.+++++.....+|.|..
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 456666 3678888888 89999999999999999887666777765
No 130
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=71.68 E-value=17 Score=31.75 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=40.0
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 005263 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (705)
Q Consensus 21 I~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~G 65 (705)
+.|...+|+...+.|.+.+||.++-+++.++.|+.++.-.|++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 467788999999999999999999999999999999888777654
No 131
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=71.54 E-value=26 Score=32.44 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=53.6
Q ss_pred CcEEEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHh----C--CCCC-CeEEEeCCe--ecCCCcccccc-----cccC
Q 005263 17 TTIEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVT----G--VLSE-QQRLICRGK--VLKDDQLLSAY-----HVED 81 (705)
Q Consensus 17 ~tMqI~VKtL~-GKT~tLeVdpsdTV~eLKekIaekt----G--IPpe-qQRLIF~GK--vLkDdkTLsDY-----GIed 81 (705)
..+.|.|+..+ ...+++.+++++++.+|.+.+-.+. + -+.+ +-.|--.|+ -|..+..|.+| .++.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~ 95 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKN 95 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhc
Confidence 46777777754 4678999999999999999887761 1 2222 456666675 36677777776 3677
Q ss_pred CCEEEEeeec
Q 005263 82 GHTLHMVVRQ 91 (705)
Q Consensus 82 GSTIhLVlRl 91 (705)
|..++|++..
T Consensus 96 ~~~~~L~L~~ 105 (108)
T smart00144 96 GREPHLVLMT 105 (108)
T ss_pred CCCceEEEEe
Confidence 8888888764
No 132
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=70.69 E-value=15 Score=33.35 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=47.9
Q ss_pred EEEEEeCCCcEEEEEec-----CCCCHHHHHHHHHHHhCCCC-CCeEEEeCCe-----ecCCCcccccc-----cccCCC
Q 005263 20 EIKIKTLDSQTYTLRVD-----KQVPVPALKEQIASVTGVLS-EQQRLICRGK-----VLKDDQLLSAY-----HVEDGH 83 (705)
Q Consensus 20 qI~VKtL~GKT~tLeVd-----psdTV~eLKekIaektGIPp-eqQRLIF~GK-----vLkDdkTLsDY-----GIedGS 83 (705)
.|+|+. ++.+..+.+. ++.+..+|+++|.+.++++. ....|.|... .|.++.-|.++ .-....
T Consensus 2 ~vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~ 80 (91)
T cd06398 2 VVKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLN 80 (91)
T ss_pred EEEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCc
Confidence 356666 5667777776 47999999999999999988 5567777642 24444444433 223567
Q ss_pred EEEEeeec
Q 005263 84 TLHMVVRQ 91 (705)
Q Consensus 84 TIhLVlRl 91 (705)
+|.|.++.
T Consensus 81 ~lrl~v~~ 88 (91)
T cd06398 81 PLRIDVTV 88 (91)
T ss_pred eEEEEEEE
Confidence 77777654
No 133
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=69.92 E-value=18 Score=30.39 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=40.4
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 27 ~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
+|+.+.+ ....||.+|-+. .+++.+..-+.++++.+..++- ..+ +++||.|.++--.
T Consensus 6 NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~~V 62 (65)
T PRK05863 6 NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVTAV 62 (65)
T ss_pred CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEeec
Confidence 5666655 456787766553 5888888999999998853322 235 8999999987643
No 134
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=69.80 E-value=21 Score=40.85 Aligned_cols=74 Identities=19% Similarity=0.221 Sum_probs=56.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCC----CC--CCeEEE-eCCeecCCCcccccccccCCCEEEEeeec
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGV----LS--EQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGI----Pp--eqQRLI-F~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
.+|+|... .+...+-+..+..|.||-..|-+..+- +. ..-.|. .+|..|+.+++|.+.+|.||++++|..+.
T Consensus 3 ~RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 3 CRVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 56788774 455777788899999999999887763 12 223443 45789999999999999999999998754
Q ss_pred CC
Q 005263 92 PV 93 (705)
Q Consensus 92 ~g 93 (705)
..
T Consensus 82 ~~ 83 (452)
T TIGR02958 82 AT 83 (452)
T ss_pred CC
Confidence 43
No 135
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=68.64 E-value=0.52 Score=44.60 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=27.0
Q ss_pred ccccccccccccccccc------CCCCC--chhHHHHHH
Q 005263 112 SHVAPSVVIETFNLPDR------GDGVP--SEISQIVSA 142 (705)
Q Consensus 112 l~V~pSdTIe~LKvkIq------keGIP--pdqQRLIfa 142 (705)
+.+.+++||.+||.+|+ ++++| +++|+|||+
T Consensus 20 ~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIys 58 (113)
T cd01814 20 KRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISA 58 (113)
T ss_pred cccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeC
Confidence 56789999999999996 35677 999999998
No 136
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=68.53 E-value=32 Score=30.89 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=45.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
..|+|+| +|+.+.+ +...||.+|-+. .++++...-+.++|..+. .....++-+++||.|.++--.
T Consensus 17 ~~m~I~V---NG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~V 81 (84)
T PRK06083 17 VLITISI---NDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAI 81 (84)
T ss_pred ceEEEEE---CCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEe
Confidence 3455544 6676655 557788777654 477777778889999883 334566778999999987543
No 137
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=68.20 E-value=8.6 Score=37.08 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=42.8
Q ss_pred EecC-CCCHHHHHHHHHHHh----CCCC------CCeEEEeCC-----------------eec---CCCcccccccccCC
Q 005263 34 RVDK-QVPVPALKEQIASVT----GVLS------EQQRLICRG-----------------KVL---KDDQLLSAYHVEDG 82 (705)
Q Consensus 34 eVdp-sdTV~eLKekIaekt----GIPp------eqQRLIF~G-----------------KvL---kDdkTLsDYGIedG 82 (705)
.|+. +.||.+||+.+.+.. |++| +..+|++.- .+| +|+++|.+|||+++
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 5886 899999999887653 4544 556776531 356 67889999999999
Q ss_pred CEEEEeee
Q 005263 83 HTLHMVVR 90 (705)
Q Consensus 83 STIhLVlR 90 (705)
..|-+..+
T Consensus 101 TEiSfF~~ 108 (122)
T PF10209_consen 101 TEISFFNM 108 (122)
T ss_pred ceeeeeCH
Confidence 99888765
No 138
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=67.79 E-value=30 Score=28.58 Aligned_cols=58 Identities=14% Similarity=0.270 Sum_probs=40.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 27 ~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
+|+.+ ++....||.+|-+. .+++.+..-+.++|+.+.-.+ ..++-+++|+.|.++--.
T Consensus 6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~v 63 (66)
T PRK05659 6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHAL 63 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEEe
Confidence 56655 45567888877654 578888888889998875332 334558899999887543
No 139
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=67.09 E-value=39 Score=28.39 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=41.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
|+|+| +|+.+.+ ....||.+|.+.+ ++......+..+++.+..+ ...++-+++|+.|.++--.
T Consensus 1 m~i~v---Ng~~~~~--~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~~v 63 (66)
T PRK08053 1 MQILF---NDQPMQC--AAGQTVHELLEQL----NQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQVI 63 (66)
T ss_pred CEEEE---CCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEEEc
Confidence 44444 5666555 5567898888653 5555667788999988421 2334558899999887543
No 140
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=65.89 E-value=13 Score=38.97 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=53.5
Q ss_pred CCCCCcEEEEEEeCCC--cEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC----e--ecCCCccccccccc
Q 005263 13 ESSETTIEIKIKTLDS--QTYT----LRVDKQVPVPALKEQIASVTGVLSEQQRLICRG----K--VLKDDQLLSAYHVE 80 (705)
Q Consensus 13 e~~~~tMqI~VKtL~G--KT~t----LeVdpsdTV~eLKekIaektGIPpeqQRLIF~G----K--vLkDdkTLsDYGIe 80 (705)
......+-||+|..|- +++. +-|+.+++|.+|-..|.++.|+|++.--++|.- + .|+...+|..+.|.
T Consensus 63 ~~~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~ 142 (249)
T PF12436_consen 63 YDPSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQ 142 (249)
T ss_dssp --TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--
T ss_pred CCCCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccC
Confidence 3445679999998863 4433 578899999999999999999999877776653 3 47889999999999
Q ss_pred CCCEEEEeeec
Q 005263 81 DGHTLHMVVRQ 91 (705)
Q Consensus 81 dGSTIhLVlRl 91 (705)
+|+.|.+-...
T Consensus 143 ~GdIi~fQ~~~ 153 (249)
T PF12436_consen 143 DGDIICFQRAP 153 (249)
T ss_dssp TTEEEEEEE--
T ss_pred CCCEEEEEecc
Confidence 99988776654
No 141
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=64.35 E-value=41 Score=30.59 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=51.0
Q ss_pred CCcEEEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHH--hCCCCC----CeEEEeCCe--ecCCCccccccc-----ccC
Q 005263 16 ETTIEIKIKTL-DSQTYTLRVDKQVPVPALKEQIASV--TGVLSE----QQRLICRGK--VLKDDQLLSAYH-----VED 81 (705)
Q Consensus 16 ~~tMqI~VKtL-~GKT~tLeVdpsdTV~eLKekIaek--tGIPpe----qQRLIF~GK--vLkDdkTLsDYG-----Ied 81 (705)
...+.|.|... +...+++.|+.+.|+.+|.+++..+ .+.... +-.|--.|+ -|..+..|.+|. ++.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~ 93 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKR 93 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHC
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhc
Confidence 45688999888 4677899999999999999988776 222221 456666674 467888898883 567
Q ss_pred CCEEEEeee
Q 005263 82 GHTLHMVVR 90 (705)
Q Consensus 82 GSTIhLVlR 90 (705)
+-.++|++.
T Consensus 94 ~~~~~L~Lv 102 (106)
T PF00794_consen 94 GKDPHLVLV 102 (106)
T ss_dssp T--EEEEEE
T ss_pred CCCcEEEEE
Confidence 778887764
No 142
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=64.02 E-value=51 Score=28.47 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=28.8
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCC--CCCeEEE
Q 005263 28 SQTYTLRVDKQVPVPALKEQIASVTGVL--SEQQRLI 62 (705)
Q Consensus 28 GKT~tLeVdpsdTV~eLKekIaektGIP--peqQRLI 62 (705)
+...+|.|..++|..+|-+.+.+|+++. +++-.|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5667799999999999999999999987 3444554
No 143
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=63.35 E-value=26 Score=29.13 Aligned_cols=58 Identities=14% Similarity=0.306 Sum_probs=41.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 27 ~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
+|+.+. ++...||.+|.+++ +++.+...+.++|+.+..+ ...++-|++|+.|.++--.
T Consensus 5 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v 62 (65)
T cd00565 5 NGEPRE--VEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAV 62 (65)
T ss_pred CCeEEE--cCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEec
Confidence 455544 45678999888765 4677888888999988543 2334568899999987644
No 144
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=62.27 E-value=17 Score=42.69 Aligned_cols=77 Identities=23% Similarity=0.395 Sum_probs=49.3
Q ss_pred CCcEEEEEEeCC--CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEe--C--Ce-ecCCC---------
Q 005263 16 ETTIEIKIKTLD--SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLIC--R--GK-VLKDD--------- 71 (705)
Q Consensus 16 ~~tMqI~VKtL~--GKT~tLeVdpsdTV~eLKekIaekt--GIP------peqQRLIF--~--GK-vLkDd--------- 71 (705)
-.+|.|+|-..+ ...+.+.|-..|||.++|+||-+.. +.| +++.-|.+ + |+ .|+|.
T Consensus 187 ~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~ 266 (539)
T PF08337_consen 187 YKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGG 266 (539)
T ss_dssp S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETT
T ss_pred eEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCC
Confidence 356778866543 3568889999999999999996642 333 24444432 2 23 45443
Q ss_pred ----cccccccccCCCEEEEeeecC
Q 005263 72 ----QLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 72 ----kTLsDYGIedGSTIhLVlRl~ 92 (705)
.||..|+|.+|++|-|+.++.
T Consensus 267 wkrLNTL~HY~V~dga~vaLv~k~~ 291 (539)
T PF08337_consen 267 WKRLNTLAHYKVPDGATVALVPKQH 291 (539)
T ss_dssp EEE--BHHHHT--TTEEEEEEES--
T ss_pred ceEeccHhhcCCCCCceEEEeeccc
Confidence 378999999999999999864
No 145
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=61.63 E-value=36 Score=29.42 Aligned_cols=53 Identities=17% Similarity=0.131 Sum_probs=39.6
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecCCCcc
Q 005263 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLKDDQL 73 (705)
Q Consensus 21 I~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~G--KvLkDdkT 73 (705)
+.|...+++...+.|.+..||.++-.++.++.++.++...+...| |.|+.+..
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d 57 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQD 57 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSB
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCc
Confidence 567778999999999999999999999999999999887766544 45544433
No 146
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=61.32 E-value=22 Score=31.90 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=33.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 005263 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (705)
Q Consensus 30 T~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~G 65 (705)
|+.|.+.+..+..+|..+|++|+..+++.-+|.|.-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 667889999999999999999999999999999974
No 147
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=59.65 E-value=0.87 Score=35.90 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=32.8
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIf 141 (705)
..|+++.+.+.++++|+.+|.+|. +.|+++++|+|.+
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~ 44 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIF 44 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEE
Confidence 567888899999999999999999 8899999999555
No 148
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=59.42 E-value=59 Score=26.71 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=37.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 27 ~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
+|+.+. +....||.+|.+.+. +. ....+.++|+.+.... ..+.-+++|+.|.++--..
T Consensus 6 Ng~~~~--~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~ 63 (65)
T PRK06944 6 NQQTLS--LPDGATVADALAAYG----AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVA 63 (65)
T ss_pred CCEEEE--CCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeecc
Confidence 556554 456788998887653 33 3456778888874322 2334488999999986443
No 149
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=59.40 E-value=28 Score=31.46 Aligned_cols=35 Identities=9% Similarity=0.226 Sum_probs=30.5
Q ss_pred EEEEEeCCCcEEEEEecC--CCCHHHHHHHHHHHhCCC
Q 005263 20 EIKIKTLDSQTYTLRVDK--QVPVPALKEQIASVTGVL 55 (705)
Q Consensus 20 qI~VKtL~GKT~tLeVdp--sdTV~eLKekIaektGIP 55 (705)
+|++.. +|.++.+.+++ +.+..+|++.|.+.++++
T Consensus 2 ~vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 2 NLKVTY-NGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 566666 67889999988 779999999999999999
No 150
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=57.87 E-value=43 Score=27.84 Aligned_cols=58 Identities=12% Similarity=0.288 Sum_probs=40.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 27 ~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
+|+.+.+ ....||.+|.+++ +++++...+.++|+.+..+ ...++-|++||.|.++--.
T Consensus 4 Ng~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V 61 (64)
T TIGR01683 4 NGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFV 61 (64)
T ss_pred CCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEec
Confidence 5665554 5577899888754 5667777888999887422 2334678999999987643
No 151
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=57.32 E-value=56 Score=27.89 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=32.4
Q ss_pred EEEEEeCCCc----EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEE
Q 005263 20 EIKIKTLDSQ----TYTLRVDKQVPVPALKEQIASVTGV--LSEQQRL 61 (705)
Q Consensus 20 qI~VKtL~GK----T~tLeVdpsdTV~eLKekIaektGI--PpeqQRL 61 (705)
-|+|-..++. ..+|.|..++|+.+|-+.+.+++++ .+.+-.|
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L 51 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCL 51 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEE
Confidence 3455555555 7789999999999999999999998 3344566
No 152
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.42 E-value=4.2 Score=46.61 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=51.5
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeee
Q 005263 32 TLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 32 tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
.++.....|=.+|..+|++++||+-...+.|.+||+|.-.+||.+-|++....+++++.
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 34666677888999999999999999999999999999999999999988777766654
No 153
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=53.75 E-value=32 Score=31.37 Aligned_cols=59 Identities=14% Similarity=0.242 Sum_probs=44.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEE------eCCeecCCCcccccc
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLI------CRGKVLKDDQLLSAY 77 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeq-QRLI------F~GKvLkDdkTLsDY 77 (705)
.-|+|...||....|.|+..+|+.++-+++.+|..+..+. --|+ +-.+.|+|...|-++
T Consensus 3 ~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 3 QVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred eEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHH
Confidence 4567777899999999999999999999999999876543 3343 124667787665443
No 154
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=53.71 E-value=1e+02 Score=26.74 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=33.7
Q ss_pred EEecC-CCCHHHHHHHHHHHhC-----CCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 33 LRVDK-QVPVPALKEQIASVTG-----VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 33 LeVdp-sdTV~eLKekIaektG-----IPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
++++. ..||.+|++.|.+++. ......++..+++...+ ++-|++|+.|-++-..
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPV 78 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPV 78 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCC
Confidence 34443 4799999999988762 11223344455544332 4468899999887543
No 155
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=53.69 E-value=1.1 Score=36.14 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=31.0
Q ss_pred CCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 106 tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
+|+...+.+.++.||.+||.+|. ..|+|++.|+|+|.
T Consensus 6 ~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~ 43 (69)
T cd01769 6 TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYA 43 (69)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 45666678888999999999998 78999999998653
No 156
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=50.93 E-value=44 Score=30.81 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=34.5
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe
Q 005263 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC 63 (705)
Q Consensus 23 VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF 63 (705)
++...|++..+.|+.+.+..+|+.++.+.+++... ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 57778999999999999999999999999998876 55544
No 157
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=50.87 E-value=29 Score=34.71 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=38.8
Q ss_pred CcEEEEEEeCCCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccc
Q 005263 17 TTIEIKIKTLDSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY 77 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdp-sdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDY 77 (705)
..|.+.|+. ..+.++++. .+.+.++++..++.+.++.+ +..|+.++...|+.||
T Consensus 66 ~~veL~V~v---Gri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 66 EEVELTVKV---GRIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEEEEE---eEEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh
Confidence 346777777 357788887 66777777766666544433 4569999999999998
No 158
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=50.74 E-value=28 Score=42.07 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=37.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec
Q 005263 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL 68 (705)
Q Consensus 27 ~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvL 68 (705)
+...+.+-++++.|+..|++.|.+.+|+|...|.|+|.|...
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 456788899999999999999999999999999999997643
No 159
>PRK07440 hypothetical protein; Provisional
Probab=49.71 E-value=1.2e+02 Score=26.03 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=44.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
.|+|+| +|+. +++....||.+|-+ ..+++++..-+.++|+.+.-+ ...++-+++||.|.++--.
T Consensus 4 ~m~i~v---NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v 67 (70)
T PRK07440 4 PITLQV---NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIV 67 (70)
T ss_pred ceEEEE---CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEe
Confidence 466665 5665 44566788887765 456777777888999988521 2345668899999887543
No 160
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=49.69 E-value=4.1 Score=46.92 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=30.5
Q ss_pred ccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 110 iTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..+.|..+.+|+.||++|. .-++++|+++|||+
T Consensus 27 ~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfa 60 (493)
T KOG0010|consen 27 YEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYA 60 (493)
T ss_pred eeEecccchHHHHHHHHHHHhcCCChhHeeeeec
Confidence 4578899999999999998 88999999999998
No 161
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=49.34 E-value=90 Score=34.78 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=45.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCC
Q 005263 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (705)
Q Consensus 27 ~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~ 95 (705)
+|+.+. +....||.+|-+. .+++.+...+.++|+.+.- ....++-|++||.|.++--..+++
T Consensus 6 NGk~~e--l~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~~VgGGs 67 (326)
T PRK11840 6 NGEPRQ--VPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVHFVGGGS 67 (326)
T ss_pred CCEEEe--cCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEEEecCCC
Confidence 566544 4567788777654 5888888899999999842 234567799999999988766654
No 162
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=47.91 E-value=34 Score=34.20 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=39.1
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccc
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY 77 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDY 77 (705)
..|.++|+. ..+.+++...+.+.++++...+.+-++-+ +..||.+++..|+.||
T Consensus 65 ~~veL~V~V---GrI~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 65 EDVELRVQV---GRIILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEEEEEE---eEEEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh
Confidence 346777776 35677777777777777777666554432 5668999999999998
No 163
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=47.32 E-value=3.7 Score=45.26 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=35.2
Q ss_pred cCCCCCCccccccccccccccccccc-CCC--CCchhHHHHHH
Q 005263 103 LPGTSRSHGSHVAPSVVIETFNLPDR-GDG--VPSEISQIVSA 142 (705)
Q Consensus 103 ~v~tGrtiTl~V~pSdTIe~LKvkIq-keG--IPpdqQRLIfa 142 (705)
+.+.+.+++++|.++++|..+|.+|. ..| .|..+|.|||+
T Consensus 6 KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~ 48 (340)
T KOG0011|consen 6 KTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYS 48 (340)
T ss_pred eeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeec
Confidence 45778889999999999999999998 333 99999999998
No 164
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=45.65 E-value=23 Score=31.72 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=30.0
Q ss_pred EEec-CCCCHHHHHHHHHH-HhCCCCC----CeEEEeCCee----cCCCcccccccccCCCEEEEe
Q 005263 33 LRVD-KQVPVPALKEQIAS-VTGVLSE----QQRLICRGKV----LKDDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 33 LeVd-psdTV~eLKekIae-ktGIPpe----qQRLIF~GKv----LkDdkTLsDYGIedGSTIhLV 88 (705)
+.++ ..+|+.+|-++|-+ +.|+-.- .-+++|.... -..+++|+++||++|+.|.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 3444 46899999988744 5564432 2344444322 123589999999999988764
No 165
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=45.34 E-value=24 Score=32.94 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=24.0
Q ss_pred EEEeCCeecCCCcccccccccC-CCEEEEeeecCCC
Q 005263 60 RLICRGKVLKDDQLLSAYHVED-GHTLHMVVRQPVP 94 (705)
Q Consensus 60 RLIF~GKvLkDdkTLsDYGIed-GSTIhLVlRl~gg 94 (705)
.|-|+||.|.++++|+||-=++ -.+|.+-+...+.
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~ 38 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQ 38 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCCC
Confidence 4789999999999999993333 3444444444443
No 166
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=44.94 E-value=77 Score=32.57 Aligned_cols=104 Identities=25% Similarity=0.232 Sum_probs=51.3
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCC---CeEE--EeCCee---cCCCcccccccccCCCEEEEeeecCCC--CC-C
Q 005263 29 QTYTLRVDKQVPVPALKEQIASVTGVLSE---QQRL--ICRGKV---LKDDQLLSAYHVEDGHTLHMVVRQPVP--SS-S 97 (705)
Q Consensus 29 KT~tLeVdpsdTV~eLKekIaektGIPpe---qQRL--IF~GKv---LkDdkTLsDYGIedGSTIhLVlRl~gg--~s-t 97 (705)
+.+.+-|..+.||.+|.+++.++.+++.+ ..|| ++++|. +..+..|... .+..++++=.-.... .. .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 35778899999999999999999998765 4555 367764 5677777765 333333322111000 00 0
Q ss_pred --CCccccC-----CCCCCc----cccccccccccccccccc-CCCCCc
Q 005263 98 --DGTHNLP-----GTSRSH----GSHVAPSVVIETFNLPDR-GDGVPS 134 (705)
Q Consensus 98 --s~~qI~v-----~tGrti----Tl~V~pSdTIe~LKvkIq-keGIPp 134 (705)
...-+.+ ...+.+ .+.|.+++++.++|..|+ +.|++.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 0011111 112333 368899999999999998 777754
No 167
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=44.70 E-value=79 Score=28.73 Aligned_cols=58 Identities=34% Similarity=0.477 Sum_probs=36.6
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-Ce------ecCCC---ccc--ccccccCCCEEEEeeecC
Q 005263 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GK------VLKDD---QLL--SAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 33 LeVdpsdTV~eLKekIaektGIPpeqQRLIF~-GK------vLkDd---kTL--sDYGIedGSTIhLVlRl~ 92 (705)
++++...||.+|-+.|.+++ +..+-+|+.. |+ +|-++ ..| .+|.+++|+.|.++-...
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~ 92 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLH 92 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCC
Confidence 34446779999999998876 3344445443 32 23222 234 468899999999986543
No 168
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.45 E-value=84 Score=34.35 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=55.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC-C--CcccccccccCCCEEEE
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK-D--DQLLSAYHVEDGHTLHM 87 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI--F~GKvLk-D--dkTLsDYGIedGSTIhL 87 (705)
....|.||..||+++...+....++..|+..|..+++...+--.|. |--+.+. | .++|..+++.+-.+|.|
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 6688999999999999999999999999999999998765433332 3445553 2 37888888887776654
No 169
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=44.07 E-value=10 Score=41.56 Aligned_cols=50 Identities=32% Similarity=0.430 Sum_probs=43.5
Q ss_pred eCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCccc
Q 005263 25 TLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLL 74 (705)
Q Consensus 25 tL~GKT~tLeVd-psdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTL 74 (705)
..+|.++.+.+. .+..|..||.+|....+|+++.|++.|.|..|+|...+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 446788887777 78889999999999999999999999999999998544
No 170
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=43.40 E-value=1.4e+02 Score=25.40 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=39.2
Q ss_pred CCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 27 DSQTYTLRVDKQ-VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 27 ~GKT~tLeVdps-dTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
+|+.+.+ ... .||.+|-+ ..+++++..-+.++|+.+.-+ ...++-|++||.|.++--.
T Consensus 6 NG~~~~~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~V 64 (67)
T PRK07696 6 NGNQIEV--PESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFV 64 (67)
T ss_pred CCEEEEc--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEe
Confidence 5676644 343 57776654 357777777788999988532 2345568999999887543
No 171
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=43.17 E-value=65 Score=28.58 Aligned_cols=62 Identities=16% Similarity=0.255 Sum_probs=37.6
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-CCCCCeEEEeC------CeecCCCcccccccccCCCEEEEeeec
Q 005263 29 QTYTLRVDKQVPVPALKEQIASVTG-VLSEQQRLICR------GKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 29 KT~tLeVdpsdTV~eLKekIaektG-IPpeqQRLIF~------GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
++|-+=.+++.||.+|+..|.+++. +.|....|... |--|+.+-++.|. +..+++|.++++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~n 71 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILKN 71 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEecC
Confidence 4555568899999999999999875 45554433321 1122222233332 2467888887753
No 172
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=37.11 E-value=87 Score=28.17 Aligned_cols=64 Identities=19% Similarity=0.289 Sum_probs=41.2
Q ss_pred EEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCCCcccccccccCCCEEEEeee
Q 005263 21 IKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 21 I~VKtL~-GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF--~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
++|+..+ .+.+-|-+ .++.+|+.|..++++++.+..+|+. .|-.++|+.-+.. -+..|+.|++.
T Consensus 5 ~kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t---Lp~nT~lm~L~ 71 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT---LPDNTVLMLLE 71 (78)
T ss_dssp EEEEETTSSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC---SSSSEEEEEEE
T ss_pred EEEecCCCCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh---CCCCCEEEEEC
Confidence 3455544 23344443 6899999999999999987777765 5777776643332 24556666654
No 173
>PLN02560 enoyl-CoA reductase
Probab=36.67 E-value=5 Score=43.67 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=30.0
Q ss_pred CCCCc---cccccccccccccccccc-CCCC-CchhHHHHH
Q 005263 106 TSRSH---GSHVAPSVVIETFNLPDR-GDGV-PSEISQIVS 141 (705)
Q Consensus 106 tGrti---Tl~V~pSdTIe~LKvkIq-keGI-PpdqQRLIf 141 (705)
+|+.+ ++++.++.||++||.+|+ +.++ ++++|||++
T Consensus 9 ~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~ 49 (308)
T PLN02560 9 SGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTL 49 (308)
T ss_pred CCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEE
Confidence 34554 689999999999999998 6665 899999986
No 174
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=35.15 E-value=2e+02 Score=25.70 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=38.0
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 005263 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (705)
Q Consensus 23 VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~G 65 (705)
|-..||+.-.+.+.+.+||.++-.++.++.|+.++.-.++.-|
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g 46 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG 46 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec
Confidence 4467888899999999999999999999999999988777666
No 175
>PRK01777 hypothetical protein; Validated
Probab=35.10 E-value=2.4e+02 Score=25.94 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=44.8
Q ss_pred cEEEEEEeCC-C--cEEEEEecCCCCHHHHHHHHHHHhCCCCC--C-----eEEEeCCeecCCCcccccccccCCCEEEE
Q 005263 18 TIEIKIKTLD-S--QTYTLRVDKQVPVPALKEQIASVTGVLSE--Q-----QRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (705)
Q Consensus 18 tMqI~VKtL~-G--KT~tLeVdpsdTV~eLKekIaektGIPpe--q-----QRLIF~GKvLkDdkTLsDYGIedGSTIhL 87 (705)
.|+|.|.... . +.+.+++....||.++-+.+ ||+.+ + -.+...||..+- |+-+++|+.|-+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeI 73 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEI 73 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEE
Confidence 6888876643 2 33567888999999876654 55444 2 355566776543 456789999999
Q ss_pred eeecCC
Q 005263 88 VVRQPV 93 (705)
Q Consensus 88 VlRl~g 93 (705)
+-.+..
T Consensus 74 yrPL~~ 79 (95)
T PRK01777 74 YRPLLA 79 (95)
T ss_pred ecCCCC
Confidence 865543
No 176
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=34.99 E-value=1.5e+02 Score=28.65 Aligned_cols=52 Identities=2% Similarity=0.182 Sum_probs=40.6
Q ss_pred CcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec
Q 005263 17 TTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL 68 (705)
Q Consensus 17 ~tMqI~VKtL~G----KT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvL 68 (705)
..+.|.+|...+ |.-.+.|++++|++.+-..|.+.++++..++-++|=..-.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 456677766543 4456789999999999999999999999988777755433
No 177
>PF10824 DUF2580: Protein of unknown function (DUF2580); InterPro: IPR022536 This entry represents the ESX-1 secretion-associated protein EspC protein family.
Probab=33.16 E-value=69 Score=27.51 Aligned_cols=68 Identities=25% Similarity=0.337 Sum_probs=41.1
Q ss_pred CCCCCCCchhhHHHHHHHHHhhhccCCCCC-------------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005263 214 QPPVIPDSLTTLSQYLSQLRHEFDGIGSLQ-------------EGLPMPASLAEVMQSTRQMLIEQSAECLHQLARQLEN 280 (705)
Q Consensus 214 ~~~ViPDsLttLsqyl~rmr~~f~~~~~~~-------------~~lps~~~L~~~~~~t~qll~~~a~~~ls~la~~l~~ 280 (705)
+.+|-|+.|.++...++.+-+.+......- -+.+....|.+++...+..|.. +++.+..++..|+.
T Consensus 4 ~l~Vdp~~Lr~~A~~~~~~A~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~L~~ 82 (100)
T PF10824_consen 4 PLHVDPEALRQAAAQLDDIADQLAAAASAVAGASAAVAAAFGPIGAAFAAALAEALEARQAALEQ-LAEALDEFADALRA 82 (100)
T ss_pred CceECHHHHHHHHHHHHHHHHHHHHHHHhhcchhccccccccHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 347889999999999988888877651111 1123334555555555444433 56666666666655
Q ss_pred cc
Q 005263 281 QA 282 (705)
Q Consensus 281 ~~ 282 (705)
-+
T Consensus 83 aA 84 (100)
T PF10824_consen 83 AA 84 (100)
T ss_pred HH
Confidence 43
No 178
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=33.12 E-value=98 Score=29.09 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=28.0
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 005263 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS 56 (705)
Q Consensus 21 I~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPp 56 (705)
|+|-..+|.+..+.|....+-.++|.++-+|+|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 556677899999999999999999999999999887
No 179
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=32.40 E-value=1.2e+02 Score=27.73 Aligned_cols=44 Identities=9% Similarity=0.001 Sum_probs=36.1
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC
Q 005263 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR 64 (705)
Q Consensus 20 qI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~ 64 (705)
+++||. +|.+..+.+...-+-..|++||+..+.+|.+..-|.|=
T Consensus 2 ~fKv~~-~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi 45 (82)
T cd06397 2 QFKSSF-LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI 45 (82)
T ss_pred eEEEEe-CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE
Confidence 466766 57777788888889999999999999999887766663
No 180
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=31.66 E-value=88 Score=28.77 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=37.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR 60 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQR 60 (705)
++|.|-..+|.++.++|..+++..+|-+.+..+.++|.+-++
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 467777788999999999999999999999999999987553
No 181
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=30.68 E-value=1.7e+02 Score=26.28 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=41.1
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCCeecCCCcccccccccCCCEEEEeee
Q 005263 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 28 GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI-F~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
++.+.++++...||+++- +.+|+|..+-.++ .+|+...= +|-+++|+.|.+.-.
T Consensus 22 ~~~~~~~~~~~~tvkd~I----EsLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVI----ESLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYPV 76 (81)
T ss_pred CCceEEecCCCCcHHHHH----HHcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEec
Confidence 456778899999997765 4579999888655 57887653 477889999988753
No 182
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=30.17 E-value=1.1e+02 Score=33.46 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=46.1
Q ss_pred EEEecCCCCHHHHHHHHHHHh--------------C-CCCCCeEEEeCCeecCCCccccccc---ccCCCEEEEeeecC
Q 005263 32 TLRVDKQVPVPALKEQIASVT--------------G-VLSEQQRLICRGKVLKDDQLLSAYH---VEDGHTLHMVVRQP 92 (705)
Q Consensus 32 tLeVdpsdTV~eLKekIaekt--------------G-IPpeqQRLIF~GKvLkDdkTLsDYG---IedGSTIhLVlRl~ 92 (705)
.|....-.-|..|+..|.+++ . .|.+...|+|+|++|+.+.||+... =+.+.-|.|.+|..
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 344555677889999999988 2 3456679999999999999987653 36777788877754
No 183
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=29.78 E-value=75 Score=28.66 Aligned_cols=55 Identities=13% Similarity=0.214 Sum_probs=38.9
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCC-------CCeEEEeCCe-ec------CCCcccccccccCCCEEEEe
Q 005263 33 LRVDKQVPVPALKEQIASVTGVLS-------EQQRLICRGK-VL------KDDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 33 LeVdpsdTV~eLKekIaektGIPp-------eqQRLIF~GK-vL------kDdkTLsDYGIedGSTIhLV 88 (705)
|+|++++|+.+|-+.+.++..+-. ..-.|++.+- .| +-+++|.++ +.+|..|++.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 579999999999999998743322 3345555542 23 236889999 9999988874
No 184
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=29.69 E-value=1.3e+02 Score=26.78 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=21.8
Q ss_pred EEEeCCCc-EEEEEec-CCCCHHHHHHHHHHHhCC
Q 005263 22 KIKTLDSQ-TYTLRVD-KQVPVPALKEQIASVTGV 54 (705)
Q Consensus 22 ~VKtL~GK-T~tLeVd-psdTV~eLKekIaektGI 54 (705)
+-|....+ ...|.++ ...+|.+||..|.++.++
T Consensus 2 ~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 2 HYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred eEEecccCCccEEEECCCeeEHHHHHHHHHHHhCC
Confidence 44444443 3457777 468999999999877665
No 185
>KOG4261 consensus Talin [Cytoskeleton]
Probab=29.63 E-value=72 Score=39.26 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=68.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEEe------CCeecCCCcccccccccCCCEEEEee
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektG---IPpeqQRLIF------~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
+.++|... +-+.++.++|+++|.+--+.|.+++- .-+.+..|+. +|-.|+..++|.+|-+.++++|..-.
T Consensus 4 lsl~i~~~-~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~ 82 (1003)
T KOG4261|consen 4 LSLKISSA-NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKR 82 (1003)
T ss_pred eEEEEEec-ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhh
Confidence 44555443 45667889999999998888887753 2244555543 34578999999999999999987644
Q ss_pred ecCCCCCCCCccccCCCCCCccccccccccccccccccc-CCCC
Q 005263 90 RQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGV 132 (705)
Q Consensus 90 Rl~gg~sts~~qI~v~tGrtiTl~V~pSdTIe~LKvkIq-keGI 132 (705)
+... ..+....|...++.|+-+.+|..+++-|- +.||
T Consensus 83 k~r~------lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igI 120 (1003)
T KOG4261|consen 83 KQRP------LKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGI 120 (1003)
T ss_pred hccc------ceeeecccccceeeecccccHHHHHHHHHhccCc
Confidence 3221 12223556666666666666666554443 4444
No 186
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=28.72 E-value=64 Score=36.19 Aligned_cols=66 Identities=20% Similarity=0.170 Sum_probs=52.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHh-CCCCCCeEEEeCC---eecC--CCcccccccccCCCE
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVT-GVLSEQQRLICRG---KVLK--DDQLLSAYHVEDGHT 84 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaekt-GIPpeqQRLIF~G---KvLk--DdkTLsDYGIedGST 84 (705)
-.|.||+.||+.....+.+.++|..|-..+.... |.+-+..+|+++= |.|. .+.||.++||.+-.+
T Consensus 278 t~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 278 TSIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred eEEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 3599999999887777788999988877776554 5666778999886 6663 478999999988765
No 187
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=28.58 E-value=2.7e+02 Score=25.36 Aligned_cols=58 Identities=26% Similarity=0.302 Sum_probs=35.1
Q ss_pred CchhhHHHHHHHHHhhhccCC-CCCCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005263 220 DSLTTLSQYLSQLRHEFDGIG-SLQEGLPMP--ASLAEVMQSTRQMLIEQSAECLHQLARQ 277 (705)
Q Consensus 220 DsLttLsqyl~rmr~~f~~~~-~~~~~lps~--~~L~~~~~~t~qll~~~a~~~ls~la~~ 277 (705)
-|.+||..||+..+....... .....+|.. ..|.+++...-+.....+-+.|...-.+
T Consensus 32 GS~~ti~~~l~~w~~~~~~~~~~~~~~lP~~l~~~~~~~~~~~~~~a~~~a~~~~~~~~~~ 92 (120)
T PF11740_consen 32 GSMSTISKHLKEWREEREAQVSEAAPDLPEALQDALAELMARLWEAAQEEAEEELEAARAE 92 (120)
T ss_pred CCHHHHHHHHHHHHHhhhccccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988775 334455532 2334444444444444444444443333
No 188
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=28.43 E-value=1.8e+02 Score=27.55 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=41.4
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeCCeecCCCcccccc----cccCCCEEEEeee
Q 005263 33 LRVDKQVPVPALKEQIASVTGVLSEQ-QRLICRGKVLKDDQLLSAY----HVEDGHTLHMVVR 90 (705)
Q Consensus 33 LeVdpsdTV~eLKekIaektGIPpeq-QRLIF~GKvLkDdkTLsDY----GIedGSTIhLVlR 90 (705)
+-|..++||.+|+..|.++..+.+++ .-|+.++.....+.+|.+. +- ++..|+|.+.
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyl~Ys 106 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKD-EDGFLYMTYS 106 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCC-CCCEEEEEEe
Confidence 45899999999999999999988877 4555566555666777553 33 3557777664
No 189
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=28.33 E-value=1.1e+02 Score=35.42 Aligned_cols=77 Identities=10% Similarity=0.167 Sum_probs=63.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EeCCeecCC---CcccccccccCCCEEEEeeec
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL--ICRGKVLKD---DQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRL--IF~GKvLkD---dkTLsDYGIedGSTIhLVlRl 91 (705)
...+|.|+..+|..|+-.+..++-+..+|..|..+-++.....-| .|--|+..| +++|.++.+.+...|.|+-+.
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 558899999999999999988888889999999888877776665 477787743 489999999998888777765
Q ss_pred CC
Q 005263 92 PV 93 (705)
Q Consensus 92 ~g 93 (705)
.+
T Consensus 393 r~ 394 (506)
T KOG2507|consen 393 RA 394 (506)
T ss_pred Cc
Confidence 54
No 190
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=27.83 E-value=2e+02 Score=26.42 Aligned_cols=71 Identities=10% Similarity=0.109 Sum_probs=47.5
Q ss_pred EEEEEeCCC-cEEEEEecCCCCHHHHHHHHHHHh-C--CCC---CCeEEEeCC--eecCCCcccccccccCCCEEEEeee
Q 005263 20 EIKIKTLDS-QTYTLRVDKQVPVPALKEQIASVT-G--VLS---EQQRLICRG--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 20 qI~VKtL~G-KT~tLeVdpsdTV~eLKekIaekt-G--IPp---eqQRLIF~G--KvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
-|..+.... -..-+.|+..+|+.++-+|++... | +++ ...|+.++| +.|..+.++++.||++-+.|.+...
T Consensus 5 Pl~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 5 PLTANFEGDFVLQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-SBEEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred ceeEeeccceEEEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 344444322 234568999999999999998764 4 322 246777888 8999999999999999999888764
No 191
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=27.28 E-value=2.7e+02 Score=25.17 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=45.7
Q ss_pred cEEE-EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCCCcccccccccCCCEEEEe
Q 005263 29 QTYT-LRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 29 KT~t-LeVdpsdTV~eLKekIaektGIPpeqQRLIF~-GKvLkDdkTLsDYGIedGSTIhLV 88 (705)
..|. +.|..+.....+-+..++++++|+..--+|-+ |--+.-.++-.+.-++.|+.|.|+
T Consensus 15 ~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 15 LPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp S-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred CcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 3444 68888888888888899999999988887765 667888899999999999998874
No 192
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=26.37 E-value=1.5e+02 Score=26.54 Aligned_cols=50 Identities=12% Similarity=0.259 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCCCcccccccccCCCEEEEeee
Q 005263 38 QVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 38 sdTV~eLKekIaektGIPpeqQRLI--F~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
-.+..+|+.|..++++++...-+|. -.|-.++|+.-+.. + +..|+.|++.
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--L-p~nt~l~~L~ 69 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--L-PDNTELMALE 69 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--C-CCCcEEEEEc
Confidence 4689999999999999997666654 46888887744433 2 3445555543
No 193
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=25.81 E-value=1.4e+02 Score=31.41 Aligned_cols=45 Identities=27% Similarity=0.422 Sum_probs=33.6
Q ss_pred cEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q 005263 18 TIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI 62 (705)
Q Consensus 18 tMqI~VKtL~---GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI 62 (705)
.+.|+++... ...|.++++..+|-.+|-++|+++.++.|+..||.
T Consensus 176 rv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred eEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 3667776643 34799999999999999999999999999999886
No 194
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=25.61 E-value=2.3e+02 Score=26.45 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=34.1
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCe
Q 005263 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGK 66 (705)
Q Consensus 27 ~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQR-LIF~GK 66 (705)
+..++.+.|+++.|=.++|+.|++.+++.+.... |+..|+
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k 60 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGK 60 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCc
Confidence 3578999999999999999999999999988774 556664
No 195
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=25.44 E-value=1.1e+02 Score=29.68 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=44.5
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccc---cccCCCEEEEeee
Q 005263 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY---HVEDGHTLHMVVR 90 (705)
Q Consensus 29 KT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDY---GIedGSTIhLVlR 90 (705)
|...+-|..+.||.+|...|.++.++.+++.-|+.++.++..+.++.+. .-.++..|++...
T Consensus 41 K~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys 105 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVR 105 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEEc
Confidence 3333469999999999999999999999986566666666777777653 1123456777664
No 196
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=24.95 E-value=1.5e+02 Score=27.02 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=34.7
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCee
Q 005263 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKV 67 (705)
Q Consensus 28 GKT~tLeVdpsdTV~eLKekIaektGIPpeqQR-LIF~GKv 67 (705)
..++.+.|++..|=.++|+.|++.+++.+...+ +++.||.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 468999999999999999999999999998774 5666654
No 197
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=24.90 E-value=4.8e+02 Score=23.62 Aligned_cols=59 Identities=7% Similarity=0.041 Sum_probs=40.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeCCeec-CCCccccc---ccccCCCEEEEeee
Q 005263 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICRGKVL-KDDQLLSA---YHVEDGHTLHMVVR 90 (705)
Q Consensus 31 ~tLeVdpsdTV~eLKekIaektGIPpeqQ-RLIF~GKvL-kDdkTLsD---YGIedGSTIhLVlR 90 (705)
-.+-|..+.||.+|...|.++.++.+++- -|+.+...+ ..+.++.+ +- .++..|++...
T Consensus 18 ~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Ys 81 (87)
T cd01612 18 KVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSYC 81 (87)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEEe
Confidence 34568999999999999999999987764 444554323 44555543 22 45677777664
No 198
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=24.88 E-value=1.1e+02 Score=26.80 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCccccccc-ccCCCEEEEe
Q 005263 39 VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYH-VEDGHTLHMV 88 (705)
Q Consensus 39 dTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYG-IedGSTIhLV 88 (705)
.|+++|++..++|+|+. ....+.-.| .-+.|.. |.||+.|+++
T Consensus 26 ~SleeLl~ia~~kfg~~-~~~v~~~dg------aeIdDI~~IRDgD~L~~~ 69 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS-ATKVLNEDG------AEIDDIDVIRDGDHLYLV 69 (69)
T ss_pred ccHHHHHHHHHHHhCCC-ceEEEcCCC------CEEeEEEEEEcCCEEEEC
Confidence 79999999999999996 322233333 3333433 5788888874
No 199
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=24.81 E-value=1.2e+02 Score=27.40 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=35.8
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCeecC
Q 005263 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKVLK 69 (705)
Q Consensus 29 KT~tLeVdpsdTV~eLKekIaektGIPpeqQR-LIF~GKvLk 69 (705)
..+.+.|++..|=.++|+.|+..+++.+...+ +++.||.-.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 67999999999999999999999999998774 567887544
No 200
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=24.60 E-value=2.6e+02 Score=23.08 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhhhhhHHhH
Q 005263 222 LTTLSQYLSQLRHEFDGIGSLQEGLPMPASLAEVMQSTRQMLIEQSAECLHQLARQLENQANVTDPSLRTSIQTT 296 (705)
Q Consensus 222 LttLsqyl~rmr~~f~~~~~~~~~lps~~~L~~~~~~t~qll~~~a~~~ls~la~~l~~~~~~tD~~~R~~iQ~~ 296 (705)
+.++.++++.|++.+..-. ..-.+.|...+|+-.=-..---...|.+++.+||+.....+......++..
T Consensus 7 ~~~~~~~~~~l~~~~~~~~-----~~d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~~~~~~~~~~ 76 (90)
T PF01627_consen 7 LEEAPEDLEQLEQALQALE-----QEDWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDKPEAEELEQL 76 (90)
T ss_dssp HHHHHHHHHHHHHHHCSSH-----HCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHHHSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-----HhhHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence 5678888999998884211 122233444444322222222227899999999998877666654333333
No 201
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.66 E-value=5.7e+02 Score=24.20 Aligned_cols=76 Identities=26% Similarity=0.339 Sum_probs=46.8
Q ss_pred CcEEEEEEeCCC--------cEEE--EEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCe------ec-CC-C-ccc--
Q 005263 17 TTIEIKIKTLDS--------QTYT--LRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGK------VL-KD-D-QLL-- 74 (705)
Q Consensus 17 ~tMqI~VKtL~G--------KT~t--LeVd-psdTV~eLKekIaektGIPpeqQRLIF~GK------vL-kD-d-kTL-- 74 (705)
+.|.++|+.+.| |... ++|. ...||.+|-..|..++--.+++ -++.+|. +| +| | ..|
T Consensus 3 ~~~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllek 81 (101)
T KOG4146|consen 3 EAHEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEK 81 (101)
T ss_pred cceeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhcc
Confidence 457788887753 2222 3432 4578999988888865333333 4555553 23 22 2 333
Q ss_pred ccccccCCCEEEEeeecCC
Q 005263 75 SAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 75 sDYGIedGSTIhLVlRl~g 93 (705)
.+|.+++|+.|.++-.+.+
T Consensus 82 edy~ledgD~ivfiSTlHG 100 (101)
T KOG4146|consen 82 EDYPLEDGDHIVFISTLHG 100 (101)
T ss_pred cccCcccCCEEEEEEeccC
Confidence 5899999999988866544
No 202
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=23.47 E-value=95 Score=38.53 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=49.7
Q ss_pred CCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCCCccccccc-c-cCCCEEEEe
Q 005263 27 DSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYH-V-EDGHTLHMV 88 (705)
Q Consensus 27 ~GKT~tLeVdp-sdTV~eLKekIaektGIPpeqQRLIF~-GKvLkDdkTLsDYG-I-edGSTIhLV 88 (705)
.|++++++.+. ..|+.+||..|+++.|+-..+|.|+-. |..+.-++.|..|. . .+-.-|+++
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 37788888874 678999999999999999999987655 67888899999886 2 345566666
No 203
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=23.20 E-value=1.7e+02 Score=29.46 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=38.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCC-CHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQV-PVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGH 83 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsd-TV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGS 83 (705)
..|.++|+. | .+.++++..+ +++++++...+.+.+.-+ ++-|+.+++..|+.|| ++.|.
T Consensus 74 ~~~eL~Vkv--G-ri~~eie~e~~~~e~ie~ic~e~lPf~y~----v~vG~F~r~kpTVTDy-~KyG~ 133 (165)
T COG4055 74 EEIELKVKV--G-RIILEIEDEDETMEKIEEICDEMLPFGYE----VRVGKFTRRKPTVTDY-IKYGE 133 (165)
T ss_pred EEEEEEEEe--e-EEEEEecCcHhHHHHHHHHHHHhCCCcee----eeeeeeeccCCcchhh-hhhCc
Confidence 447777777 3 4667777665 666666555444333322 5679999999999998 44444
No 204
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=23.01 E-value=4.1e+02 Score=24.19 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=54.8
Q ss_pred cEEEEEEeCCCcEEE-EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCCCcccccccccCCCEEEEeeecC
Q 005263 18 TIEIKIKTLDSQTYT-LRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 18 tMqI~VKtL~GKT~t-LeVdpsdTV~eLKekIaektGIPpeqQRLIF~-GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
+++|++..--...|. +.|........+-+-.++++++++..--+|.+ |--++-.++-..+-++.|+.|.|+-|-+
T Consensus 4 tFkitltSdp~lpfkvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 4 TFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred EEEEEecCCCCCcceEEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 345555442233343 57877777888888889999999988777665 5567788888888899999999987643
No 205
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=22.92 E-value=2.1e+02 Score=25.91 Aligned_cols=39 Identities=10% Similarity=-0.010 Sum_probs=34.5
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE
Q 005263 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR 60 (705)
Q Consensus 22 ~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQR 60 (705)
.|...+|+...+-|.+.+|+.++-+.+.++.++.+.+--
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~ 41 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHY 41 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHhe
Confidence 467788999999999999999999999999999886543
No 206
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=21.98 E-value=3.3e+02 Score=23.65 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=36.4
Q ss_pred EEEEEEe-CCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEE--e-CC--eecCC
Q 005263 19 IEIKIKT-LDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLI--C-RG--KVLKD 70 (705)
Q Consensus 19 MqI~VKt-L~GKT~tLeVdpsdTV~eLKekIaektGIPp--eqQRLI--F-~G--KvLkD 70 (705)
++|+.-. .++...+|.|..++|+.+|-+.+.+|+++.. +.-.|+ + .| +.|.|
T Consensus 5 lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~ 64 (90)
T smart00314 5 LRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPD 64 (90)
T ss_pred EEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCC
Confidence 4555433 2256678999999999999999999999875 344443 3 34 45654
No 207
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=21.95 E-value=1.5e+02 Score=35.14 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=55.7
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEE--eC----CeecCCCcc----cccccccCCCE
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLI--CR----GKVLKDDQL----LSAYHVEDGHT 84 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpe-qQRLI--F~----GKvLkDdkT----LsDYGIedGST 84 (705)
-..+-|+|-+.||....|.|+..+|+.++-+.+.+|..+-.+ +.-|+ |. -|.++|... |+++.+..+..
T Consensus 186 vrklvVKvfseDgasksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~dseNK 265 (622)
T KOG3751|consen 186 VRKLVVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQDSENK 265 (622)
T ss_pred ccceeEEEEccCCceeeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHHHHhhcccCCCce
Confidence 344566777778999999999999999999999999886553 34443 22 256778754 56677777888
Q ss_pred EEEeeec
Q 005263 85 LHMVVRQ 91 (705)
Q Consensus 85 IhLVlRl 91 (705)
|++..+.
T Consensus 266 ~lF~k~~ 272 (622)
T KOG3751|consen 266 LLFRKNP 272 (622)
T ss_pred eEEeecc
Confidence 8777654
No 208
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=21.34 E-value=1.8e+02 Score=26.30 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHhCCCCCCeE--EEeCCeecCCCcccccccccCCCEEEEee
Q 005263 38 QVPVPALKEQIASVTGVLSEQQR--LICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 38 sdTV~eLKekIaektGIPpeqQR--LIF~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
-.+..+|+.|..+++.++...-+ |.-.|-.++|+.-+.. +.++ |..|++
T Consensus 20 A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~--Lpdn-T~lm~L 70 (78)
T cd06539 20 ASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT--LGDN-THFMVL 70 (78)
T ss_pred ecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh--CCCC-CEEEEE
Confidence 35899999999999999865444 4567888877744433 3344 444444
No 209
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=20.16 E-value=1.4e+02 Score=35.84 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=33.3
Q ss_pred CCcEEEEEEeCCCcEEEEEecCC---------CCHHHHHHHHHHHhCCCCC
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQ---------VPVPALKEQIASVTGVLSE 57 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdps---------dTV~eLKekIaektGIPpe 57 (705)
...+.|+|+..+|++..+..... .|+.+||.+|++++|+..+
T Consensus 246 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~~~~~~~~ 296 (603)
T PRK05841 246 NRKLNITIQKEDGKKEDFVFTYGDAEKGENQFKTLGDLKKLLKEKTGLDLN 296 (603)
T ss_pred CCeEEEEEecCCCcEEEEEEeecCccccCCceeechhhhhhhhhccccccc
Confidence 56799999999898766544433 5789999999999997654
Done!