Query 005263
Match_columns 705
No_of_seqs 288 out of 1236
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 20:17:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u30_A Ubiquitin, linear DI-ub 99.9 1.1E-23 3.7E-28 200.0 5.5 126 12-142 14-142 (172)
2 3rt3_B Ubiquitin-like protein 99.9 2.5E-23 8.6E-28 194.3 4.5 120 18-142 2-127 (159)
3 3b08_A Polyubiquitin-C, ubiqui 99.8 1E-21 3.5E-26 179.8 4.8 119 19-142 1-122 (152)
4 3phx_B Ubiquitin-like protein 99.8 8.4E-19 2.9E-23 146.1 10.3 77 17-93 3-79 (79)
5 4dwf_A HLA-B-associated transc 99.8 1.7E-18 5.8E-23 147.8 10.7 80 16-96 3-82 (90)
6 3dbh_I NEDD8; cell cycle, acti 99.8 1.8E-18 6.3E-23 145.9 10.4 82 13-94 7-88 (88)
7 4hcn_B Polyubiquitin, ubiquiti 99.8 1.4E-18 4.7E-23 152.0 9.4 83 12-94 16-98 (98)
8 3v6c_B Ubiquitin; structural g 99.7 4.5E-18 1.5E-22 146.2 10.7 81 12-92 11-91 (91)
9 3plu_A Ubiquitin-like modifier 99.7 3.2E-18 1.1E-22 151.6 9.9 76 14-89 17-92 (93)
10 4fbj_B NEDD8; effector-HOST ta 99.7 3.9E-18 1.3E-22 146.4 9.3 77 19-95 1-77 (88)
11 1wy8_A NP95-like ring finger p 99.7 1.3E-17 4.6E-22 141.7 12.2 82 15-96 4-87 (89)
12 1wx8_A Riken cDNA 4931431F19; 99.7 7.5E-18 2.6E-22 145.9 10.2 86 9-95 8-93 (96)
13 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1.3E-17 4.4E-22 141.0 11.3 80 15-94 4-83 (87)
14 1ndd_A NEDD8, protein (ubiquit 99.7 9.2E-18 3.2E-22 136.9 9.7 76 19-94 1-76 (76)
15 1uh6_A Ubiquitin-like 5; beta- 99.7 7.2E-18 2.5E-22 151.0 9.6 80 10-89 20-99 (100)
16 3mtn_B UBA80, ubcep1, ubiquiti 99.7 1.2E-17 3.9E-22 139.6 10.1 78 17-94 2-79 (85)
17 3n3k_B Ubiquitin; hydrolase, p 99.7 6.5E-18 2.2E-22 141.4 8.5 79 17-95 2-80 (85)
18 2uyz_B Small ubiquitin-related 99.7 9.2E-18 3.2E-22 139.8 9.1 78 17-94 2-79 (79)
19 1ttn_A DC-UBP, dendritic cell- 99.7 1.1E-17 3.9E-22 148.5 9.8 84 12-95 17-100 (106)
20 1wyw_B Ubiquitin-like protein 99.7 1.2E-17 3.9E-22 146.3 9.7 82 13-94 16-97 (97)
21 2dzi_A Ubiquitin-like protein 99.7 2.1E-17 7.1E-22 137.2 10.6 78 15-92 4-81 (81)
22 4eew_A Large proline-rich prot 99.7 1.5E-17 5.2E-22 141.4 10.0 75 15-90 14-88 (88)
23 3a9j_A Ubiquitin; protein comp 99.7 2E-17 6.9E-22 134.9 10.2 76 19-94 1-76 (76)
24 2faz_A Ubiquitin-like containi 99.7 1.8E-17 6E-22 137.5 9.8 75 18-92 2-78 (78)
25 2kdi_A Ubiquitin, vacuolar pro 99.7 7.3E-18 2.5E-22 152.2 7.9 101 17-122 8-113 (114)
26 2hj8_A Interferon-induced 17 k 99.7 1.4E-17 4.7E-22 142.8 9.1 78 17-94 3-80 (88)
27 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 2E-17 6.9E-22 142.4 10.1 77 19-95 2-78 (96)
28 1wgd_A Homocysteine-responsive 99.7 2.5E-17 8.7E-22 142.2 10.1 80 16-95 5-90 (93)
29 2wyq_A HHR23A, UV excision rep 99.7 3.3E-17 1.1E-21 137.7 10.5 78 16-93 3-83 (85)
30 1wx7_A Ubiquilin 3; ubiquitin- 99.7 7.2E-17 2.5E-21 142.9 13.0 82 15-97 14-95 (106)
31 2kan_A Uncharacterized protein 99.7 4.6E-17 1.6E-21 142.3 11.0 82 13-95 10-92 (94)
32 2kk8_A Uncharacterized protein 99.7 2.4E-17 8.2E-22 141.3 9.0 75 16-90 8-83 (84)
33 3m62_B UV excision repair prot 99.7 1.4E-17 4.6E-22 148.4 7.5 78 18-95 1-78 (106)
34 1uel_A HHR23B, UV excision rep 99.7 8.9E-17 3.1E-21 139.8 11.8 77 19-95 1-80 (95)
35 3vdz_A Ubiquitin-40S ribosomal 99.7 7.8E-17 2.7E-21 144.5 10.9 79 16-94 33-111 (111)
36 1sif_A Ubiquitin; hydrophobic 99.7 5.2E-17 1.8E-21 139.4 9.1 77 18-94 9-85 (88)
37 2lxa_A Ubiquitin-like protein 99.7 2.9E-17 1E-21 142.9 7.0 74 18-91 1-78 (87)
38 2l7r_A Ubiquitin-like protein 99.7 4.8E-17 1.6E-21 141.3 8.3 80 13-94 14-93 (93)
39 4a20_A Ubiquitin-like protein 99.7 6.5E-17 2.2E-21 143.6 8.9 78 15-92 16-97 (98)
40 1yqb_A Ubiquilin 3; structural 99.7 1.3E-16 4.4E-21 140.9 10.5 82 13-95 17-98 (100)
41 1v5o_A 1700011N24RIK protein; 99.7 1.7E-16 5.7E-21 140.1 10.0 81 17-97 6-91 (102)
42 2bwf_A Ubiquitin-like protein 99.7 2.5E-16 8.4E-21 129.6 10.3 73 18-91 4-76 (77)
43 1j8c_A Ubiquitin-like protein 99.7 2.6E-16 9E-21 144.6 11.1 81 16-97 30-110 (125)
44 1yx5_B Ubiquitin; proteasome, 99.7 2.3E-16 7.7E-21 137.3 10.1 76 19-94 1-76 (98)
45 3b1l_X E3 ubiquitin-protein li 99.5 6.1E-18 2.1E-22 139.4 0.0 75 19-93 1-75 (76)
46 1v2y_A 3300001G02RIK protein; 99.7 1.2E-16 4.2E-21 143.9 8.3 81 15-95 4-100 (105)
47 2klc_A Ubiquilin-1; ubiquitin- 99.7 3.3E-16 1.1E-20 138.3 10.9 78 15-93 22-99 (101)
48 1wia_A Hypothetical ubiquitin- 99.7 3.8E-16 1.3E-20 135.2 10.4 78 15-95 4-82 (95)
49 1wgh_A Ubiquitin-like 3, HCG-1 99.7 5.6E-16 1.9E-20 141.8 11.8 84 12-95 10-103 (116)
50 3rt3_B Ubiquitin-like protein 99.6 3.8E-16 1.3E-20 145.8 10.7 79 16-94 79-157 (159)
51 2ojr_A Ubiquitin; lanthide-bin 99.6 6.5E-16 2.2E-20 138.2 11.5 79 16-94 33-111 (111)
52 3l0w_B Monoubiquitinated proli 99.6 7.2E-16 2.5E-20 148.1 11.0 77 19-95 1-77 (169)
53 1wju_A NEDD8 ultimate buster-1 99.6 7.5E-16 2.6E-20 137.9 10.3 80 15-95 12-95 (100)
54 1we6_A Splicing factor, putati 99.6 5.5E-16 1.9E-20 138.5 8.8 78 17-94 26-107 (111)
55 2gow_A HCG-1 protein, ubiquiti 99.6 1.2E-15 4.1E-20 141.2 9.6 81 14-94 13-103 (125)
56 1wxv_A BAG-family molecular ch 99.6 3E-15 1E-19 128.9 11.0 77 16-93 5-87 (92)
57 1v86_A DNA segment, CHR 7, way 99.6 1.5E-15 5.2E-20 132.7 9.2 81 11-93 10-90 (95)
58 2fnj_B Transcription elongatio 99.6 8.5E-16 2.9E-20 141.3 7.8 72 19-90 1-80 (118)
59 1v5t_A 8430435I17RIK protein; 99.6 1.6E-15 5.5E-20 131.0 8.9 76 16-92 5-84 (90)
60 1wgg_A Ubiquitin carboxyl-term 99.6 3.3E-15 1.1E-19 131.2 10.7 75 16-92 5-80 (96)
61 1x1m_A Ubiquitin-like protein 99.6 2.3E-15 8E-20 134.0 9.8 79 16-94 10-103 (107)
62 2kdb_A Homocysteine-responsive 99.6 9.7E-16 3.3E-20 136.2 7.3 74 15-88 20-99 (99)
63 4ajy_B Transcription elongatio 99.6 1.4E-15 4.9E-20 139.8 8.2 73 19-91 1-81 (118)
64 1se9_A Ubiquitin family; ubiqu 99.6 3E-15 1E-19 139.0 10.2 79 16-94 14-106 (126)
65 3q3f_A Ribonuclease/ubiquitin 99.6 2.2E-15 7.7E-20 148.0 9.7 78 17-94 104-181 (189)
66 3u30_A Ubiquitin, linear DI-ub 99.6 2.3E-15 7.8E-20 142.9 9.3 78 17-94 95-172 (172)
67 1we7_A SF3A1 protein; structur 99.6 5.4E-15 1.9E-19 133.0 10.5 78 17-94 24-111 (115)
68 3b08_A Polyubiquitin-C, ubiqui 99.6 6E-15 2.1E-19 134.9 10.7 78 17-94 75-152 (152)
69 3m63_B Ubiquitin domain-contai 99.6 8.7E-16 3E-20 136.0 4.9 75 16-91 26-100 (101)
70 2daf_A FLJ35834 protein; hypot 99.6 1.1E-14 3.9E-19 133.8 11.8 81 13-93 10-91 (118)
71 4dbg_A Ranbp-type and C3HC4-ty 99.6 6.9E-15 2.4E-19 132.8 10.2 80 12-91 18-100 (105)
72 3u5e_m 60S ribosomal protein L 99.6 2E-16 6.8E-21 145.0 0.0 77 19-95 1-77 (128)
73 2kd0_A LRR repeats and ubiquit 99.5 1.5E-14 5.1E-19 123.9 9.3 73 17-90 11-83 (85)
74 3u5c_f 40S ribosomal protein S 99.5 1.1E-15 3.9E-20 145.3 0.0 77 19-95 1-77 (152)
75 1oqy_A HHR23A, UV excision rep 99.5 1.5E-14 5.2E-19 154.6 7.5 79 16-94 5-87 (368)
76 2dzm_A FAS-associated factor 1 99.5 3.5E-14 1.2E-18 126.8 8.2 75 18-93 8-84 (100)
77 2kjr_A CG11242; UBL, ubiquitin 99.5 1.7E-13 5.7E-18 120.9 10.5 76 13-88 10-93 (95)
78 2dzj_A Synaptic glycoprotein S 99.5 6E-14 2E-18 121.8 7.3 72 16-87 8-85 (88)
79 3ai5_A Yeast enhanced green fl 99.4 1.6E-13 5.4E-18 143.7 10.0 80 13-92 228-307 (307)
80 4b6w_A Tubulin-specific chaper 99.4 9.9E-14 3.4E-18 120.2 6.8 75 18-92 2-85 (86)
81 2kj6_A Tubulin folding cofacto 99.4 4.9E-13 1.7E-17 118.5 9.5 76 15-90 11-95 (97)
82 1wf9_A NPL4 family protein; be 99.4 3E-13 1E-17 120.7 7.8 74 17-91 6-95 (107)
83 2io1_B Small ubiquitin-related 99.4 6.7E-13 2.3E-17 116.8 9.1 80 15-94 4-83 (94)
84 1t0y_A Tubulin folding cofacto 99.4 9.9E-13 3.4E-17 120.0 10.3 76 17-92 5-88 (122)
85 1v6e_A Cytoskeleton-associated 99.4 6.7E-13 2.3E-17 115.7 8.7 75 17-91 6-88 (95)
86 2xzm_9 RPS31E; ribosome, trans 99.4 3.6E-14 1.2E-18 139.7 0.0 73 19-96 1-73 (189)
87 1wz0_A Ubiquitin-like protein 99.3 6.7E-12 2.3E-16 112.7 11.3 82 14-95 20-101 (104)
88 2io0_B Small ubiquitin-related 99.3 8.5E-12 2.9E-16 109.4 10.7 78 17-94 4-81 (91)
89 2d07_B Ubiquitin-like protein 99.3 6.5E-12 2.2E-16 110.1 9.8 80 14-93 13-92 (93)
90 2eke_C Ubiquitin-like protein 99.3 2.3E-11 8E-16 109.8 10.7 80 13-93 26-105 (106)
91 2kzr_A Ubiquitin thioesterase 99.2 6.5E-12 2.2E-16 107.4 6.5 72 19-91 1-78 (86)
92 1wm3_A Ubiquitin-like protein 99.2 2.7E-11 9.2E-16 101.0 9.8 72 18-89 1-72 (72)
93 2k8h_A Small ubiquitin protein 99.2 2.1E-11 7.1E-16 110.7 9.7 82 13-94 21-102 (110)
94 3shq_A UBLCP1; phosphatase, hy 99.2 6.3E-12 2.1E-16 132.0 7.1 76 16-92 3-81 (320)
95 3a4r_A Nfatc2-interacting prot 99.2 5.2E-11 1.8E-15 101.3 10.8 74 15-88 4-78 (79)
96 1wjn_A Tubulin-folding protein 99.1 6.3E-10 2.1E-14 97.1 10.0 76 16-91 7-93 (97)
97 3kyd_D Small ubiquitin-related 98.9 8.7E-09 3E-13 94.5 10.9 77 16-92 38-114 (115)
98 3pge_A SUMO-modified prolifera 98.7 3.7E-08 1.3E-12 97.9 10.6 82 14-96 25-106 (200)
99 3tix_A Ubiquitin-like protein 98.7 2.2E-08 7.5E-13 99.3 8.3 80 14-94 53-132 (207)
100 3v7o_A Minor nucleoprotein VP3 98.4 2.7E-08 9.4E-13 99.8 0.2 83 12-95 15-97 (227)
101 2pjh_A Protein NPL4, nuclear p 98.3 3.1E-07 1.1E-11 78.6 3.2 71 17-88 3-78 (80)
102 2jxx_A Nfatc2-interacting prot 98.2 5.9E-06 2E-10 73.6 10.2 76 13-88 20-96 (97)
103 3uf8_A Ubiquitin-like protein 98.1 6.5E-06 2.2E-10 81.5 9.6 82 13-95 16-97 (209)
104 3goe_A DNA repair protein RAD6 98.1 1.8E-05 6.3E-10 68.5 10.0 73 17-89 8-81 (82)
105 3ix6_A TS, tsase, thymidylate 98.0 8.3E-07 2.9E-11 95.0 0.0 82 12-94 15-96 (360)
106 4da1_A Protein phosphatase 1K, 97.9 1.4E-06 4.8E-11 92.6 0.0 79 15-94 27-105 (389)
107 2l76_A Nfatc2-interacting prot 97.9 9.1E-05 3.1E-09 66.1 11.1 78 12-90 15-92 (95)
108 4efo_A Serine/threonine-protei 97.8 8.2E-05 2.8E-09 66.2 8.7 70 20-89 14-87 (94)
109 2kc2_A Talin-1, F1; FERM, adhe 97.4 0.00024 8E-09 66.4 6.2 71 20-90 13-122 (128)
110 2bps_A YUKD protein; ubiquitin 97.1 0.00079 2.7E-08 58.4 6.7 70 18-87 4-80 (81)
111 2al3_A TUG long isoform; TUG U 97.0 0.0013 4.6E-08 58.1 7.3 77 17-93 8-84 (90)
112 3qx1_A FAS-associated factor 1 97.0 0.0037 1.3E-07 53.2 9.2 74 15-89 4-82 (84)
113 1wju_A NEDD8 ultimate buster-1 96.9 7.9E-05 2.7E-09 66.8 -1.9 63 66-142 2-65 (100)
114 4eew_A Large proline-rich prot 96.9 2.1E-05 7.1E-10 66.5 -5.6 59 79-142 2-63 (88)
115 3plu_A Ubiquitin-like modifier 96.8 2.1E-05 7.2E-10 69.8 -5.8 43 100-142 22-67 (93)
116 2xzm_9 RPS31E; ribosome, trans 96.8 0.00019 6.6E-09 70.8 0.0 39 105-143 8-47 (189)
117 2dzk_A UBX domain-containing p 96.8 0.0087 3E-07 53.8 10.6 77 16-92 11-92 (109)
118 1uh6_A Ubiquitin-like 5; beta- 96.5 7.6E-05 2.6E-09 66.9 -4.9 43 100-142 29-74 (100)
119 2lxa_A Ubiquitin-like protein 96.3 0.00013 4.5E-09 63.3 -4.1 38 105-142 9-50 (87)
120 1wj4_A KIAA0794 protein; UBX d 96.3 0.013 4.6E-07 53.8 8.7 75 15-90 40-119 (124)
121 3m63_B Ubiquitin domain-contai 96.2 0.00017 5.7E-09 63.6 -4.3 65 71-142 7-73 (101)
122 3b1l_X E3 ubiquitin-protein li 95.0 0.001 3.6E-08 54.1 0.0 38 105-142 8-46 (76)
123 2cr5_A Reproduction 8; UBX dom 95.8 0.042 1.5E-06 49.1 9.5 74 16-90 21-98 (109)
124 3phx_B Ubiquitin-like protein 95.8 0.0002 6.9E-09 59.1 -5.3 38 105-142 12-50 (79)
125 2fnj_B Transcription elongatio 95.7 0.00015 5.2E-09 66.7 -6.9 34 109-142 13-47 (118)
126 4dwf_A HLA-B-associated transc 95.7 0.00024 8.3E-09 60.1 -5.3 38 105-142 13-51 (90)
127 2dzm_A FAS-associated factor 1 95.7 0.0003 1E-08 62.8 -5.0 37 105-141 16-53 (100)
128 2kk8_A Uncharacterized protein 95.6 0.00026 8.9E-09 60.4 -5.6 38 105-142 18-56 (84)
129 3u5e_m 60S ribosomal protein L 95.6 0.0021 7.1E-08 58.6 0.0 38 105-142 8-46 (128)
130 3ivf_A Talin-1; FERM domain, c 95.5 0.028 9.5E-07 59.1 8.2 100 18-124 3-112 (371)
131 1s3s_G P47 protein; AAA ATPase 95.5 0.038 1.3E-06 50.9 8.0 71 15-85 49-123 (127)
132 2kjr_A CG11242; UBL, ubiquitin 95.4 0.00078 2.7E-08 59.2 -3.2 36 107-142 27-63 (95)
133 3dbh_I NEDD8; cell cycle, acti 95.4 0.00064 2.2E-08 56.8 -3.8 38 105-142 20-58 (88)
134 3u5c_f 40S ribosomal protein S 95.3 0.0028 9.7E-08 60.2 0.0 38 105-142 8-46 (152)
135 4b6w_A Tubulin-specific chaper 95.2 0.0019 6.5E-08 55.7 -1.5 35 108-142 15-50 (86)
136 4fbj_B NEDD8; effector-HOST ta 95.2 0.00049 1.7E-08 58.6 -5.1 38 105-142 8-46 (88)
137 4ajy_B Transcription elongatio 95.2 0.0005 1.7E-08 63.4 -5.4 34 109-142 13-47 (118)
138 3m62_B UV excision repair prot 95.2 0.00091 3.1E-08 59.2 -3.7 38 105-142 9-47 (106)
139 3v6c_B Ubiquitin; structural g 95.1 0.00079 2.7E-08 57.4 -4.1 44 99-142 17-63 (91)
140 2kj6_A Tubulin folding cofacto 95.1 0.0011 3.9E-08 58.5 -3.3 35 108-142 27-62 (97)
141 2daj_A KIAA0977 protein, COBL- 95.1 0.06 2.1E-06 47.5 7.5 73 14-89 6-81 (91)
142 1wyw_B Ubiquitin-like protein 95.0 0.00054 1.9E-08 59.6 -5.5 38 105-142 29-67 (97)
143 2uyz_B Small ubiquitin-related 94.9 0.00056 1.9E-08 56.4 -5.5 38 105-142 11-49 (79)
144 4e71_A Plexin-B2, MM1; transme 94.8 0.15 5.1E-06 46.7 9.7 75 16-90 9-110 (111)
145 1v5t_A 8430435I17RIK protein; 94.7 0.0013 4.4E-08 56.5 -4.0 41 100-140 8-51 (90)
146 2r2o_A Plexin-B1; effector dom 94.6 0.12 3.9E-06 49.1 8.7 77 16-92 22-130 (138)
147 1wh3_A 59 kDa 2'-5'-oligoadeny 94.6 0.0012 4.2E-08 55.2 -4.2 38 105-142 15-53 (87)
148 4a20_A Ubiquitin-like protein 94.6 0.0015 5E-08 57.9 -3.9 38 105-142 27-68 (98)
149 1wgh_A Ubiquitin-like 3, HCG-1 94.6 0.0019 6.5E-08 59.1 -3.3 38 105-142 24-70 (116)
150 2hj8_A Interferon-induced 17 k 94.5 0.0011 3.9E-08 56.3 -4.6 38 105-142 12-50 (88)
151 2faz_A Ubiquitin-like containi 94.4 0.001 3.4E-08 54.6 -5.2 38 105-142 10-50 (78)
152 1wgg_A Ubiquitin carboxyl-term 94.3 0.0013 4.4E-08 57.4 -4.8 37 106-142 15-53 (96)
153 2l7r_A Ubiquitin-like protein 94.1 0.0011 3.7E-08 57.3 -5.7 43 100-142 20-63 (93)
154 1sif_A Ubiquitin; hydrophobic 94.1 0.0015 5.3E-08 55.6 -4.8 44 99-142 9-55 (88)
155 1wy8_A NP95-like ring finger p 94.1 0.0022 7.7E-08 53.9 -3.8 38 105-142 15-55 (89)
156 1wgd_A Homocysteine-responsive 94.0 0.0025 8.5E-08 54.6 -3.6 34 109-142 21-57 (93)
157 3k9o_B Ubiquitin, UBB+1; E2-25 93.9 0.0018 6.1E-08 55.2 -4.8 38 105-142 9-47 (96)
158 4hcn_B Polyubiquitin, ubiquiti 93.9 0.002 6.7E-08 56.0 -4.7 38 105-142 30-68 (98)
159 2gow_A HCG-1 protein, ubiquiti 93.8 0.0032 1.1E-07 58.2 -3.6 38 105-142 25-71 (125)
160 3mtn_B UBA80, ubcep1, ubiquiti 93.8 0.003 1E-07 52.1 -3.5 38 105-142 11-49 (85)
161 4dbg_A Ranbp-type and C3HC4-ty 93.7 0.0016 5.6E-08 58.8 -5.5 36 107-142 36-72 (105)
162 1se9_A Ubiquitin family; ubiqu 93.7 0.0032 1.1E-07 58.6 -3.8 38 105-142 24-70 (126)
163 2dzi_A Ubiquitin-like protein 93.7 0.0029 9.9E-08 51.8 -3.7 38 105-142 15-53 (81)
164 2kdb_A Homocysteine-responsive 93.6 0.003 1E-07 55.9 -3.9 34 109-142 37-73 (99)
165 2kan_A Uncharacterized protein 93.6 0.0022 7.7E-08 55.6 -4.8 34 109-142 26-60 (94)
166 1uel_A HHR23B, UV excision rep 93.5 0.0023 7.9E-08 55.2 -4.7 38 105-142 8-49 (95)
167 1v86_A DNA segment, CHR 7, way 93.5 0.0025 8.4E-08 55.4 -4.6 37 106-142 25-62 (95)
168 3jyu_A Ubiquitin carboxyl-term 93.5 0.4 1.4E-05 48.0 10.7 76 19-94 140-224 (231)
169 2wyq_A HHR23A, UV excision rep 93.5 0.0023 7.8E-08 53.2 -4.7 38 105-142 13-54 (85)
170 1v5o_A 1700011N24RIK protein; 93.4 0.0035 1.2E-07 54.9 -3.8 37 106-142 20-57 (102)
171 1ttn_A DC-UBP, dendritic cell- 93.3 0.0031 1.1E-07 55.6 -4.4 38 105-142 31-69 (106)
172 4a3p_A Ubiquitin carboxyl-term 93.3 0.42 1.4E-05 47.4 10.4 76 19-94 128-212 (217)
173 1ndd_A NEDD8, protein (ubiquit 93.3 0.0023 7.7E-08 51.5 -4.9 38 105-142 8-46 (76)
174 3n3k_B Ubiquitin; hydrolase, p 93.2 0.0018 6.2E-08 53.5 -5.8 38 105-142 11-49 (85)
175 2ojr_A Ubiquitin; lanthide-bin 93.1 0.0013 4.3E-08 58.6 -7.3 38 105-142 43-81 (111)
176 3l0w_B Monoubiquitinated proli 93.1 0.0027 9.4E-08 60.8 -5.5 38 105-142 8-46 (169)
177 3q3f_A Ribonuclease/ubiquitin 92.5 0.0042 1.4E-07 61.1 -5.2 38 105-142 113-151 (189)
178 1we6_A Splicing factor, putati 92.4 0.0061 2.1E-07 54.0 -3.9 53 80-142 23-77 (111)
179 1ryj_A Unknown; beta/alpha pro 92.3 1.2 4E-05 36.6 10.1 64 18-91 4-67 (70)
180 1yx5_B Ubiquitin; proteasome, 92.2 0.0058 2E-07 52.7 -4.2 38 105-142 8-46 (98)
181 3h6n_A Plexin-D1; structural g 92.0 0.62 2.1E-05 43.6 9.0 74 18-91 4-105 (127)
182 3vdz_A Ubiquitin-40S ribosomal 92.0 0.0046 1.6E-07 55.1 -5.1 38 105-142 43-81 (111)
183 2kdi_A Ubiquitin, vacuolar pro 92.0 0.0048 1.7E-07 55.4 -5.1 38 105-142 17-55 (114)
184 1v6e_A Cytoskeleton-associated 92.0 0.0071 2.4E-07 52.3 -3.9 34 109-142 20-54 (95)
185 1vjk_A Molybdopterin convertin 91.9 0.95 3.2E-05 39.2 9.6 69 17-90 8-94 (98)
186 2dzj_A Synaptic glycoprotein S 91.7 0.014 4.7E-07 50.4 -2.3 38 105-142 18-60 (88)
187 3a9j_A Ubiquitin; protein comp 91.7 0.0048 1.7E-07 49.5 -4.9 38 105-142 8-46 (76)
188 1we7_A SF3A1 protein; structur 91.7 0.0068 2.3E-07 54.2 -4.4 57 83-142 24-81 (115)
189 4e74_A Plexin-A4; RBD, structu 91.6 0.44 1.5E-05 44.0 7.4 75 17-91 12-115 (117)
190 1oey_A P67-PHOX, neutrophil cy 91.6 0.79 2.7E-05 39.9 8.6 71 17-90 4-81 (83)
191 1wxv_A BAG-family molecular ch 91.4 0.0093 3.2E-07 50.8 -3.7 36 107-142 16-57 (92)
192 1wx8_A Riken cDNA 4931431F19; 91.2 0.0083 2.9E-07 51.4 -4.2 36 107-142 26-62 (96)
193 1v2y_A 3300001G02RIK protein; 91.2 0.0034 1.2E-07 56.5 -6.9 38 100-137 8-48 (105)
194 2klc_A Ubiquilin-1; ubiquitin- 90.7 0.013 4.5E-07 51.3 -3.5 36 107-142 34-70 (101)
195 2kd0_A LRR repeats and ubiquit 90.6 0.0067 2.3E-07 51.5 -5.3 38 105-142 19-57 (85)
196 2bwf_A Ubiquitin-like protein 90.4 0.0072 2.5E-07 49.0 -5.1 37 106-142 12-49 (77)
197 1yqb_A Ubiquilin 3; structural 90.3 0.009 3.1E-07 52.4 -4.9 33 110-142 34-67 (100)
198 1j8c_A Ubiquitin-like protein 90.1 0.016 5.3E-07 53.1 -3.7 36 107-142 41-77 (125)
199 2l32_A Small archaeal modifier 89.9 0.61 2.1E-05 39.2 6.2 62 19-90 1-62 (74)
200 1t0y_A Tubulin folding cofacto 89.5 0.024 8.4E-07 51.4 -2.9 34 109-142 19-53 (122)
201 3kuz_A Plexin-C1; structural g 89.3 1.8 6.2E-05 40.5 9.4 74 16-89 17-125 (126)
202 1wf9_A NPL4 family protein; be 89.2 0.02 6.9E-07 50.7 -3.6 37 105-142 15-53 (107)
203 1wx7_A Ubiquilin 3; ubiquitin- 88.8 0.025 8.7E-07 49.6 -3.2 33 110-142 29-62 (106)
204 1vd2_A Protein kinase C, IOTA 88.7 2.3 7.7E-05 37.4 9.1 51 15-66 3-54 (89)
205 3rpf_C Molybdopterin convertin 88.6 1.1 3.9E-05 36.8 6.9 69 19-92 1-72 (74)
206 4efo_A Serine/threonine-protei 87.5 0.015 5.2E-07 51.7 -5.4 39 105-143 21-60 (94)
207 1wia_A Hypothetical ubiquitin- 87.4 0.03 1E-06 47.9 -3.5 36 105-142 15-50 (95)
208 3po0_A Small archaeal modifier 87.3 4.2 0.00014 34.2 9.8 59 29-92 18-87 (89)
209 3ai5_A Yeast enhanced green fl 86.8 0.036 1.2E-06 58.4 -4.1 44 99-142 233-279 (307)
210 1x1m_A Ubiquitin-like protein 85.4 0.043 1.5E-06 48.4 -3.7 35 108-142 26-73 (107)
211 1tyg_B YJBS; alpha beta barrel 85.0 1.9 6.5E-05 37.5 6.6 68 14-91 16-84 (87)
212 2juo_A GA-binding protein alph 84.9 2.1 7.1E-05 37.8 6.6 63 30-92 4-66 (89)
213 1oqy_A HHR23A, UV excision rep 84.6 0.046 1.6E-06 58.7 -4.7 38 105-142 15-56 (368)
214 1wgk_A Riken cDNA 2900073H19 p 84.3 5.3 0.00018 36.1 9.4 76 17-94 10-108 (114)
215 3hm6_X Plexin-B1; structural g 83.8 2.8 9.7E-05 48.0 9.0 77 16-92 255-363 (644)
216 2kzr_A Ubiquitin thioesterase 83.2 0.04 1.4E-06 46.6 -4.7 36 105-141 8-45 (86)
217 3dwg_C 9.5 kDa culture filtrat 82.2 4.7 0.00016 34.2 7.8 73 19-93 1-92 (93)
218 3shq_A UBLCP1; phosphatase, hy 81.5 0.074 2.5E-06 55.9 -4.5 35 106-140 13-48 (320)
219 1ef1_A Moesin; membrane, FERM 80.5 5.2 0.00018 40.2 8.8 72 18-90 1-78 (294)
220 1fm0_D Molybdopterin convertin 79.9 5.3 0.00018 32.7 7.2 57 29-91 17-78 (81)
221 1ip9_A BEM1 protein; ubiquitin 79.5 3.3 0.00011 36.4 5.9 46 17-65 11-57 (85)
222 2qjl_A URM1, ubiquitin-related 79.2 9.4 0.00032 33.0 8.8 72 18-92 1-97 (99)
223 1h4r_A Merlin; FERM, neurofibr 77.9 5.6 0.00019 40.5 8.2 74 16-90 20-98 (314)
224 1wgr_A Growth factor receptor- 77.6 7.9 0.00027 34.7 7.9 78 14-91 5-93 (100)
225 3ig3_A Plxna3 protein; plexin 76.8 8.2 0.00028 44.2 9.7 77 16-92 231-336 (627)
226 3qij_A Protein 4.1; cytoskelet 76.3 5.6 0.00019 40.7 7.6 80 12-91 11-96 (296)
227 3ivf_A Talin-1; FERM domain, c 74.4 11 0.00038 39.3 9.5 75 17-91 84-168 (371)
228 2q5w_D Molybdopterin convertin 73.4 6.2 0.00021 32.1 5.7 57 29-91 16-74 (77)
229 1f0z_A THis protein; ubiquitin 72.9 5.8 0.0002 31.9 5.4 58 27-91 6-63 (66)
230 2io1_B Small ubiquitin-related 72.9 0.093 3.2E-06 45.9 -5.7 41 105-145 15-56 (94)
231 2l52_A Methanosarcina acetivor 72.8 11 0.00038 32.7 7.6 70 18-91 3-96 (99)
232 2kvr_A Ubiquitin carboxyl-term 72.5 2.8 9.7E-05 38.8 3.9 34 31-64 58-91 (130)
233 1wgy_A RAP guanine nucleotide 72.5 12 0.00041 33.9 7.8 75 16-90 7-86 (104)
234 2kmc_A Fermitin family homolog 72.3 17 0.00059 32.8 8.7 73 18-90 19-99 (102)
235 2i1j_A Moesin; FERM, coiled-co 71.0 9.7 0.00033 43.0 8.5 73 17-90 3-81 (575)
236 2k9x_A Tburm1, uncharacterized 68.0 1.8 6.1E-05 39.1 1.4 75 17-93 3-101 (110)
237 2kl0_A Putative thiamin biosyn 65.8 8.9 0.0003 32.0 5.2 60 27-94 6-65 (73)
238 2daf_A FLJ35834 protein; hypot 65.1 0.24 8.2E-06 45.8 -4.9 37 106-142 25-62 (118)
239 4eut_A Serine/threonine-protei 65.0 17 0.0006 37.4 8.4 58 21-78 313-373 (396)
240 2kmm_A Guanosine-3',5'-BIS(dip 63.0 11 0.00036 30.2 5.1 62 19-89 1-62 (73)
241 2cu3_A Unknown function protei 62.4 13 0.00046 29.6 5.5 58 26-91 4-61 (64)
242 2k5p_A THis protein, thiamine- 60.7 14 0.00047 31.2 5.5 68 19-94 1-69 (78)
243 1q1o_A Cell division control p 56.8 14 0.00048 33.1 5.1 49 17-65 4-64 (98)
244 1wjn_A Tubulin-folding protein 56.4 1.6 5.5E-05 37.5 -1.0 37 106-142 21-58 (97)
245 3qa8_A MGC80376 protein; kinas 54.9 11 0.00039 43.2 5.3 51 27-77 320-371 (676)
246 1wm3_A Ubiquitin-like protein 54.1 0.43 1.5E-05 39.2 -4.8 40 105-144 9-49 (72)
247 2g1e_A Hypothetical protein TA 53.5 39 0.0014 27.9 7.2 58 33-91 19-87 (90)
248 2dhz_A RAP guanine nucleotide 52.3 39 0.0013 31.3 7.4 74 17-90 8-92 (120)
249 3a4r_A Nfatc2-interacting prot 51.3 0.46 1.6E-05 40.0 -5.2 40 105-144 15-56 (79)
250 2io0_B Small ubiquitin-related 51.2 0.5 1.7E-05 41.1 -5.1 41 105-145 13-54 (91)
251 3onh_A Ubiquitin-activating en 50.0 27 0.00092 32.7 6.0 52 37-89 18-78 (127)
252 2ylm_A Ubiquitin carboxyl-term 49.8 26 0.0009 39.1 7.0 77 14-90 126-217 (530)
253 1f2r_I Inhibitor of caspase-ac 48.4 92 0.0031 28.0 8.9 69 17-90 17-89 (100)
254 2inc_C TOUB protein; DIIRON, 4 47.4 67 0.0023 28.1 7.6 61 30-90 14-82 (83)
255 2hj1_A Hypothetical protein; s 46.4 40 0.0014 29.8 6.3 72 17-93 11-88 (97)
256 1rws_A Hypothetical protein PF 46.1 8.3 0.00028 32.0 1.8 48 33-89 25-72 (77)
257 2c7h_A RBBP6, retinoblastoma-b 44.7 60 0.002 28.5 7.0 44 17-60 5-50 (86)
258 2ylm_A Ubiquitin carboxyl-term 44.0 15 0.0005 41.1 3.9 32 31-62 38-69 (530)
259 2k8h_A Small ubiquitin protein 42.2 1.1 3.9E-05 40.4 -4.4 40 105-144 34-74 (110)
260 2d07_B Ubiquitin-like protein 41.5 1.2 4E-05 38.7 -4.3 41 105-145 25-66 (93)
261 1wz0_A Ubiquitin-like protein 41.3 0.76 2.6E-05 41.0 -5.6 41 105-145 32-73 (104)
262 3ge3_C Toluene-4-monooxygenase 41.1 1.5E+02 0.0051 26.0 8.8 71 19-89 4-82 (84)
263 3au4_A Myosin-X; protein-prote 40.7 45 0.0015 36.8 7.1 60 17-76 215-280 (555)
264 1y8x_B Ubiquitin-activating en 40.1 28 0.00096 30.9 4.3 59 30-88 6-82 (98)
265 2lgx_A Fermitin family homolog 35.2 14 0.00046 33.9 1.5 70 19-89 27-101 (112)
266 2eel_A Cell death activator CI 32.9 66 0.0023 28.4 5.5 66 20-91 11-79 (91)
267 3w1s_C Ubiquitin-like protein 30.8 2E+02 0.0069 25.1 8.2 73 16-90 6-85 (91)
268 4gmv_A RAS-associated and plec 30.8 86 0.003 32.4 6.8 72 17-88 30-112 (281)
269 2eke_C Ubiquitin-like protein 29.5 1.9 6.6E-05 38.7 -5.0 40 106-145 39-79 (106)
270 3r8s_T 50S ribosomal protein L 25.9 1.2E+02 0.004 26.8 5.8 40 28-67 27-67 (93)
271 3pvl_A Myosin VIIA isoform 1; 25.3 87 0.003 35.9 6.2 40 17-56 262-301 (655)
272 1j0g_A Hypothetical protein 18 25.2 2E+02 0.0069 25.2 7.0 62 32-93 27-89 (92)
273 3tca_A Amyloid beta A4 precurs 23.6 1.4E+02 0.0049 29.1 6.7 58 17-74 33-97 (291)
274 4gdk_A Ubiquitin-like protein 22.2 1.7E+02 0.0059 25.4 6.2 72 17-90 4-85 (91)
275 3hk0_A Growth factor receptor- 22.1 95 0.0032 31.7 5.2 58 19-76 9-73 (256)
276 1pqs_A Cell division control p 20.0 75 0.0026 27.1 3.3 37 29-65 2-43 (77)
No 1
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.88 E-value=1.1e-23 Score=200.03 Aligned_cols=126 Identities=30% Similarity=0.448 Sum_probs=114.4
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 12 se~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
.......|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||++++
T Consensus 14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 93 (172)
T 3u30_A 14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 93 (172)
T ss_dssp -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecc
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCccccC--CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 92 PVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 92 ~gg~sts~~qI~v--~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+ ++.+++ .+|+.+.++|.+++||..||.+|+ ++|+|+++|||+|.
T Consensus 94 ~g-----g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 142 (172)
T 3u30_A 94 RG-----GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 142 (172)
T ss_dssp CC-----CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred cc-----cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC
Confidence 76 455554 789999999999999999999999 89999999999985
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.87 E-value=2.5e-23 Score=194.30 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=111.9
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-e-CCeecCCCcccccccccCCCEEEEeeec-CCC
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-C-RGKVLKDDQLLSAYHVEDGHTLHMVVRQ-PVP 94 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI-F-~GKvLkDdkTLsDYGIedGSTIhLVlRl-~gg 94 (705)
.|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+ | +||.|+|+++|++|+|++|++|||+++. ++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~- 80 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDE- 80 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCC-
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCC-
Confidence 389999999999999999999999999999999999999999999 9 7999999999999999999999999984 33
Q ss_pred CCCCCccccC--CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 95 SSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 95 ~sts~~qI~v--~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
++++++ .+|+.++++|++++||++||.+|+ ++|+|+++|||+|+
T Consensus 81 ----~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 127 (159)
T 3rt3_B 81 ----PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 127 (159)
T ss_dssp ----CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred ----cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 466655 788999999999999999999999 89999999999986
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.83 E-value=1e-21 Score=179.84 Aligned_cols=119 Identities=32% Similarity=0.482 Sum_probs=111.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCCCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSD 98 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~sts 98 (705)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||+.+.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~----- 75 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG----- 75 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTT-----
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccc-----
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CccccC--CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 99 ~~qI~v--~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
++.+++ ..|+.+.++|.+++||..||.+|+ +.|+|+++|||+|.
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~ 122 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC
Confidence 355554 678899999999999999999999 89999999999985
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.77 E-value=8.4e-19 Score=146.10 Aligned_cols=77 Identities=25% Similarity=0.316 Sum_probs=74.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
..|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|+.|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999764
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.76 E-value=1.7e-18 Score=147.78 Aligned_cols=80 Identities=44% Similarity=0.666 Sum_probs=74.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCC
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~ 95 (705)
..+|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|.+|+| +|++|||+++.++..
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999 899999999987654
Q ss_pred C
Q 005263 96 S 96 (705)
Q Consensus 96 s 96 (705)
.
T Consensus 82 ~ 82 (90)
T 4dwf_A 82 H 82 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 6
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.76 E-value=1.8e-18 Score=145.92 Aligned_cols=82 Identities=29% Similarity=0.475 Sum_probs=77.6
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 13 e~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
...+..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|.+|+|+++++|||++++.
T Consensus 7 ~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 7 VGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLR 86 (88)
T ss_dssp SSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCC
T ss_pred CCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 005263 93 VP 94 (705)
Q Consensus 93 gg 94 (705)
++
T Consensus 87 GG 88 (88)
T 3dbh_I 87 GG 88 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 7
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.4e-18 Score=151.96 Aligned_cols=83 Identities=34% Similarity=0.477 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 12 se~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
....+..|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+
T Consensus 16 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 16 LYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp ------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 005263 92 PVP 94 (705)
Q Consensus 92 ~gg 94 (705)
.++
T Consensus 96 ~GG 98 (98)
T 4hcn_B 96 RGG 98 (98)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 8
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.75 E-value=4.5e-18 Score=146.19 Aligned_cols=81 Identities=32% Similarity=0.500 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 12 se~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
.......|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|.+|+|++|++|||++|+
T Consensus 11 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 11 GLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 45556789999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 005263 92 P 92 (705)
Q Consensus 92 ~ 92 (705)
+
T Consensus 91 r 91 (91)
T 3v6c_B 91 R 91 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.75 E-value=3.2e-18 Score=151.62 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=71.6
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEee
Q 005263 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 14 ~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
....+|+|+||++.|+++.++|++++||.+||++|++++|+|+++|||+|.||+|+|+.||++|+|++|++|||+.
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 4557899999999999999999999999999999999999999999999999999999999999999999999985
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.74 E-value=3.9e-18 Score=146.41 Aligned_cols=77 Identities=29% Similarity=0.483 Sum_probs=73.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~ 95 (705)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++++++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998864
No 11
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.3e-17 Score=141.73 Aligned_cols=82 Identities=28% Similarity=0.441 Sum_probs=76.7
Q ss_pred CCCcEEEEEEeCCC-cEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 15 SETTIEIKIKTLDS-QTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 15 ~~~tMqI~VKtL~G-KT~tL-eVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
....|+|+||+++| +++.+ +|++++||.+||++|++++++|+++|||+|+||.|+|+++|.+|+|+++++|||++++.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 34679999999999 79999 59999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 005263 93 VPSS 96 (705)
Q Consensus 93 gg~s 96 (705)
++.+
T Consensus 84 gG~~ 87 (89)
T 1wy8_A 84 SGPS 87 (89)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7643
No 12
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=7.5e-18 Score=145.88 Aligned_cols=86 Identities=29% Similarity=0.425 Sum_probs=78.9
Q ss_pred CCCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEe
Q 005263 9 IPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 9 ~~~se~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLV 88 (705)
..........|+|+||+. ++++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|.+|+|++|++|||+
T Consensus 8 ~~~~~~~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~ 86 (96)
T 1wx8_A 8 VSGREPSSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVV 86 (96)
T ss_dssp CCCSCCCSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECC
T ss_pred ccCCCCCCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEE
Confidence 333444567899999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 005263 89 VRQPVPS 95 (705)
Q Consensus 89 lRl~gg~ 95 (705)
+++.++.
T Consensus 87 ~~~~~g~ 93 (96)
T 1wx8_A 87 VRSHSGP 93 (96)
T ss_dssp BCCSSCS
T ss_pred EeCCCCC
Confidence 9988754
No 13
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.3e-17 Score=141.01 Aligned_cols=80 Identities=26% Similarity=0.386 Sum_probs=76.6
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 15 ~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
+...|+|+||+++++++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999998875
No 14
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.73 E-value=9.2e-18 Score=136.90 Aligned_cols=76 Identities=29% Similarity=0.488 Sum_probs=72.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998763
No 15
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=7.2e-18 Score=150.96 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=75.9
Q ss_pred CCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEee
Q 005263 10 PGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 10 ~~se~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
-.+++...+|+|+||++.|+++.|+|++++||.+||++|++++|+|+++|||+|.||+|+|+++|++|+|+++++|||++
T Consensus 20 ~~~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 20 RGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred ccCCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 44666777899999999999999999999999999999999999999999999999999999999999999999999986
No 16
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.2e-17 Score=139.63 Aligned_cols=78 Identities=33% Similarity=0.494 Sum_probs=75.1
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
.+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998875
No 17
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=6.5e-18 Score=141.41 Aligned_cols=79 Identities=29% Similarity=0.453 Sum_probs=73.1
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~ 95 (705)
.+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999998753
No 18
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.72 E-value=9.2e-18 Score=139.80 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=74.7
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
..|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|||+|+||.|+|++||++|+|++|++|||++++.++
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999998763
No 19
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.1e-17 Score=148.50 Aligned_cols=84 Identities=19% Similarity=0.315 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 12 se~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
.......|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|.+|+|++|++|||+++.
T Consensus 17 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 17 PPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp ----CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCC
T ss_pred CCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 33456779999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 005263 92 PVPS 95 (705)
Q Consensus 92 ~gg~ 95 (705)
+..+
T Consensus 97 ~~~~ 100 (106)
T 1ttn_A 97 PVQN 100 (106)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 20
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.72 E-value=1.2e-17 Score=146.28 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=76.2
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 13 e~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
......|+|+||+++|+++.|+|++++||.+||++|+++.|+|+++|||+|+||.|+|++||++|+|+++++|||++++.
T Consensus 16 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 16 KKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp ---CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 005263 93 VP 94 (705)
Q Consensus 93 gg 94 (705)
++
T Consensus 96 GG 97 (97)
T 1wyw_B 96 GG 97 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 21
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=137.18 Aligned_cols=78 Identities=28% Similarity=0.469 Sum_probs=74.1
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 15 ~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
+...|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+++++
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 346799999999999999999999999999999999999999999999999999999999999999999999999863
No 22
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=141.36 Aligned_cols=75 Identities=45% Similarity=0.681 Sum_probs=71.6
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeee
Q 005263 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 15 ~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
....|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+| +|++|||++|
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 44679999999999999999999999999999999999999999999999999999999999999 8999999986
No 23
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.72 E-value=2e-17 Score=134.88 Aligned_cols=76 Identities=37% Similarity=0.546 Sum_probs=73.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998764
No 24
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.8e-17 Score=137.54 Aligned_cols=75 Identities=29% Similarity=0.471 Sum_probs=71.9
Q ss_pred cEEEEEEeCCCcEE-EEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 18 TIEIKIKTLDSQTY-TLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 18 tMqI~VKtL~GKT~-tLe-VdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
.|+|+||+++|+++ .++ |++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||+++++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 59999999999985 899 9999999999999999999999999999999999999999999999999999999863
No 25
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=7.3e-18 Score=152.24 Aligned_cols=101 Identities=30% Similarity=0.345 Sum_probs=92.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~s 96 (705)
..++|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++++.++.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~- 86 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS- 86 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC-
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc-
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCccccC-----CCCCCccccccccccccc
Q 005263 97 SDGTHNLP-----GTSRSHGSHVAPSVVIET 122 (705)
Q Consensus 97 ts~~qI~v-----~tGrtiTl~V~pSdTIe~ 122 (705)
.+++ .+|++++++|+++++|..
T Consensus 87 ----~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 ----MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp ----CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ----eeeccccccccCceEEEEeccccccCC
Confidence 3333 357889999999998864
No 26
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=142.83 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=72.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
..|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|++++.++
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999998775
No 27
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.71 E-value=2e-17 Score=142.44 Aligned_cols=77 Identities=36% Similarity=0.541 Sum_probs=73.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~ 95 (705)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|.+|+|++|++|||++++.++.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998764
No 28
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.5e-17 Score=142.24 Aligned_cols=80 Identities=29% Similarity=0.381 Sum_probs=74.5
Q ss_pred CCcEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHh--CCCCCCeEEEeCCeecCCCcccccc--cccCCCEEEEee
Q 005263 16 ETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVT--GVLSEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHMVV 89 (705)
Q Consensus 16 ~~tMqI~VKtL~GK--T~tLeVdpsdTV~eLKekIaekt--GIPpeqQRLIF~GKvLkDdkTLsDY--GIedGSTIhLVl 89 (705)
...|+|+||+++++ ++.++|++++||.+||++|++++ ++|+++|||+|+||.|+|+++|++| +|+++++|||++
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 35699999999988 67778889999999999999999 9999999999999999999999999 999999999999
Q ss_pred ecCCCC
Q 005263 90 RQPVPS 95 (705)
Q Consensus 90 Rl~gg~ 95 (705)
++.++.
T Consensus 85 ~~~gg~ 90 (93)
T 1wgd_A 85 NVKSGP 90 (93)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 988764
No 29
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.71 E-value=3.3e-17 Score=137.68 Aligned_cols=78 Identities=28% Similarity=0.487 Sum_probs=71.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaek---tGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
...|+|+||+++|+++.++|++++||.+||++|+++ +|+|+++|||+|+||.|+|+++|++|+|++|++|||+++.+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 357999999999999999999999999999999998 89999999999999999999999999999999999999865
Q ss_pred C
Q 005263 93 V 93 (705)
Q Consensus 93 g 93 (705)
.
T Consensus 83 ~ 83 (85)
T 2wyq_A 83 K 83 (85)
T ss_dssp -
T ss_pred C
Confidence 4
No 30
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=7.2e-17 Score=142.90 Aligned_cols=82 Identities=28% Similarity=0.412 Sum_probs=76.5
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 15 ~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
.+..|+|+||+.+++ +.|+|++++||.+||++|++++++++++|||+|+||.|+|+++|.+|+|++|++|||++++.++
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 457899999999886 7999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC
Q 005263 95 SSS 97 (705)
Q Consensus 95 ~st 97 (705)
+..
T Consensus 93 ~~~ 95 (106)
T 1wx7_A 93 AMG 95 (106)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 31
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=4.6e-17 Score=142.26 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=76.7
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCC-cccccccccCCCEEEEeeec
Q 005263 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 13 e~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDd-kTLsDYGIedGSTIhLVlRl 91 (705)
......|+|+||++++ ++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ ++|++|+|++|++|+|++++
T Consensus 10 ~~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 10 HAAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp CSSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred ccCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 3455679999999877 899999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCC
Q 005263 92 PVPS 95 (705)
Q Consensus 92 ~gg~ 95 (705)
+++.
T Consensus 89 ~gg~ 92 (94)
T 2kan_A 89 INRA 92 (94)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
No 32
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=2.4e-17 Score=141.34 Aligned_cols=75 Identities=19% Similarity=0.362 Sum_probs=72.4
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee-cCCCcccccccccCCCEEEEeee
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV-LKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKv-LkDdkTLsDYGIedGSTIhLVlR 90 (705)
...|+|+||++.|+++.++|++++||.+||++|++++|+|+++|||+|+||. |+|+++|++|+|++|++|+|+++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 3569999999999999999999999999999999999999999999999999 99999999999999999999986
No 33
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.4e-17 Score=148.37 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=71.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCC
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~ 95 (705)
+|+|+||+++|+++.|+|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+...
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999876543
No 34
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=8.9e-17 Score=139.75 Aligned_cols=77 Identities=32% Similarity=0.559 Sum_probs=73.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaek---tGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~ 95 (705)
|+|+||+++|+++.++|++++||.+||++|+++ +|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~ 80 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence 899999999999999999999999999999999 78999999999999999999999999999999999999876543
No 35
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.69 E-value=7.8e-17 Score=144.54 Aligned_cols=79 Identities=35% Similarity=0.514 Sum_probs=75.4
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
...|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999998763
No 36
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=5.2e-17 Score=139.41 Aligned_cols=77 Identities=35% Similarity=0.555 Sum_probs=70.4
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
-|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++++.++
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999998875
No 37
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.9e-17 Score=142.87 Aligned_cols=74 Identities=18% Similarity=0.417 Sum_probs=70.1
Q ss_pred cEEEEEEeCCCcEEEEEec--CCCCHHHHHHHH-HHHhCCCCCCeEEEeCCeecCCCcccccccc-cCCCEEEEeeec
Q 005263 18 TIEIKIKTLDSQTYTLRVD--KQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVRQ 91 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVd--psdTV~eLKekI-aektGIPpeqQRLIF~GKvLkDdkTLsDYGI-edGSTIhLVlRl 91 (705)
+|+|+||+++|++|.|+|+ +++||.+||++| +++.|+|+++|||+|+||+|+|+++|++|+| .+|++|+|+++.
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 4999999999999998766 999999999999 9999999999999999999999999999999 799999999874
No 38
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.68 E-value=4.8e-17 Score=141.34 Aligned_cols=80 Identities=24% Similarity=0.303 Sum_probs=71.8
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 13 e~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
......|+|+||+ |+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|+|++++.
T Consensus 14 ~~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 14 LVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRML 91 (93)
T ss_dssp ------CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCC
T ss_pred CCCCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 3445679999999 89999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 005263 93 VP 94 (705)
Q Consensus 93 gg 94 (705)
++
T Consensus 92 GG 93 (93)
T 2l7r_A 92 GG 93 (93)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 39
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.68 E-value=6.5e-17 Score=143.59 Aligned_cols=78 Identities=15% Similarity=0.394 Sum_probs=71.2
Q ss_pred CCCcEEEEEEeCCCcEEEE--EecCCCCHHHHHHHH-HHHhCCCCCCeEEEeCCeecCCCcccccccc-cCCCEEEEeee
Q 005263 15 SETTIEIKIKTLDSQTYTL--RVDKQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVR 90 (705)
Q Consensus 15 ~~~tMqI~VKtL~GKT~tL--eVdpsdTV~eLKekI-aektGIPpeqQRLIF~GKvLkDdkTLsDYGI-edGSTIhLVlR 90 (705)
....|+|+||+++|++|.+ +|++++||.+||++| +++.|+|+++|||+|+||+|+|+++|++|+| ++|++|+|+++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 3467999999999998777 566999999999999 8889999999999999999999999999999 99999999997
Q ss_pred cC
Q 005263 91 QP 92 (705)
Q Consensus 91 l~ 92 (705)
++
T Consensus 96 kp 97 (98)
T 4a20_A 96 PN 97 (98)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 40
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.3e-16 Score=140.87 Aligned_cols=82 Identities=29% Similarity=0.426 Sum_probs=76.1
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 13 e~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
...+..|+|+||+++++ +.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++++
T Consensus 17 ~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~ 95 (100)
T 1yqb_A 17 RGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 95 (100)
T ss_dssp SCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCC
Confidence 34457799999999886 79999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 005263 93 VPS 95 (705)
Q Consensus 93 gg~ 95 (705)
+++
T Consensus 96 ~~p 98 (100)
T 1yqb_A 96 HRA 98 (100)
T ss_dssp CSC
T ss_pred CCC
Confidence 754
No 41
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=1.7e-16 Score=140.09 Aligned_cols=81 Identities=19% Similarity=0.361 Sum_probs=74.8
Q ss_pred CcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCC-cccccccccCCCEEEEeeec
Q 005263 17 TTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 17 ~tMqI~VKtL~G----KT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDd-kTLsDYGIedGSTIhLVlRl 91 (705)
..|+|+||++.+ +++.++|++++||.+||++|++++++|+++|||+|+||.|+|+ ++|.+|+|++|++|||+.+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 469999999754 7999999999999999999999999999999999999999988 79999999999999999998
Q ss_pred CCCCCC
Q 005263 92 PVPSSS 97 (705)
Q Consensus 92 ~gg~st 97 (705)
.+++..
T Consensus 86 ~gg~~~ 91 (102)
T 1v5o_A 86 NVGLRT 91 (102)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 877544
No 42
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.67 E-value=2.5e-16 Score=129.56 Aligned_cols=73 Identities=38% Similarity=0.690 Sum_probs=70.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
.|+|+||+ +|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||+.+.
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 49999999 89999999999999999999999999999999999999999999999999999999999998753
No 43
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.6e-16 Score=144.60 Aligned_cols=81 Identities=31% Similarity=0.416 Sum_probs=72.1
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCC
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~ 95 (705)
...|+|+||++ ++++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|.+|+|++|++|||++++.++.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 46799999999 99999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CC
Q 005263 96 SS 97 (705)
Q Consensus 96 st 97 (705)
..
T Consensus 109 ~~ 110 (125)
T 1j8c_A 109 SS 110 (125)
T ss_dssp --
T ss_pred CC
Confidence 43
No 44
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.66 E-value=2.3e-16 Score=137.30 Aligned_cols=76 Identities=37% Similarity=0.550 Sum_probs=73.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|+++..++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998864
No 45
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.48 E-value=6.1e-18 Score=139.42 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=72.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999765
No 46
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=1.2e-16 Score=143.91 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=74.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---------------CCeEEEeCCeecC-CCccccccc
Q 005263 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---------------EQQRLICRGKVLK-DDQLLSAYH 78 (705)
Q Consensus 15 ~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPp---------------eqQRLIF~GKvLk-DdkTLsDYG 78 (705)
....|+|+||+++|++|.|+|++++||.+||++|++++++|+ ++|+|+|+||.|+ |+++|++|+
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 345699999999999999999999999999999999999887 4679999999996 669999999
Q ss_pred ccCCCEEEEeeecCCCC
Q 005263 79 VEDGHTLHMVVRQPVPS 95 (705)
Q Consensus 79 IedGSTIhLVlRl~gg~ 95 (705)
|++|++|||++++.+..
T Consensus 84 I~~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 84 IRNRDEVSFIKKLGQKS 100 (105)
T ss_dssp CCSSEEEEEEECSCSCC
T ss_pred CCCCCEEEEEehhccCC
Confidence 99999999999987753
No 47
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=3.3e-16 Score=138.34 Aligned_cols=78 Identities=28% Similarity=0.418 Sum_probs=73.8
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 15 ~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
....|+|+||+. |+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|.+|+|++|++|+|+++++.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 346799999998 899999999999999999999999999999999999999999999999999999999999998765
No 48
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=3.8e-16 Score=135.18 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=72.8
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCC-cccccccccCCCEEEEeeecCC
Q 005263 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 15 ~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDd-kTLsDYGIedGSTIhLVlRl~g 93 (705)
+...|+|+||+++|+.+.++|++++||.+||++|++++ +++|||+|+||.|+|+ ++|.+|+|++|++|||+++.+.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 45679999999999999999999999999999999988 8999999999999999 9999999999999999998766
Q ss_pred CC
Q 005263 94 PS 95 (705)
Q Consensus 94 g~ 95 (705)
..
T Consensus 81 ~~ 82 (95)
T 1wia_A 81 AA 82 (95)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 49
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=5.6e-16 Score=141.81 Aligned_cols=84 Identities=17% Similarity=0.316 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCC--CCCCeEEEeCCeecCCCcccccccccCC-
Q 005263 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDG- 82 (705)
Q Consensus 12 se~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIae------ktGI--PpeqQRLIF~GKvLkDdkTLsDYGIedG- 82 (705)
...+...|+|+||++.|++++|+|++++||.+||++|++ ++++ ++++|||||.||+|+|+++|++|+|..+
T Consensus 10 ~~~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~ 89 (116)
T 1wgh_A 10 SHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK 89 (116)
T ss_dssp CCCCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC
Confidence 444567799999999999999999999999999999999 6675 6999999999999999999999999766
Q ss_pred -CEEEEeeecCCCC
Q 005263 83 -HTLHMVVRQPVPS 95 (705)
Q Consensus 83 -STIhLVlRl~gg~ 95 (705)
.+|||++++....
T Consensus 90 ~~tlhLvlr~~~~~ 103 (116)
T 1wgh_A 90 TTVMHLVARETLPE 103 (116)
T ss_dssp EEEEEEEECSSCSS
T ss_pred ceEEEEEccCCCCC
Confidence 6899999876543
No 50
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.65 E-value=3.8e-16 Score=145.78 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=74.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
...|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999875
No 51
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.65 E-value=6.5e-16 Score=138.21 Aligned_cols=79 Identities=35% Similarity=0.514 Sum_probs=75.4
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
...|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.++
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999998763
No 52
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.63 E-value=7.2e-16 Score=148.12 Aligned_cols=77 Identities=36% Similarity=0.547 Sum_probs=73.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~ 95 (705)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++++.++.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998864
No 53
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=7.5e-16 Score=137.92 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=70.5
Q ss_pred CCCcEEEEEEeCC----CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeee
Q 005263 15 SETTIEIKIKTLD----SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 15 ~~~tMqI~VKtL~----GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
......|.|+..+ ++++.++|++++||.+||++|++++|+|+++|||||+||+|+|++||++|+|++|++| |+++
T Consensus 12 ~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~ 90 (100)
T 1wju_A 12 TTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLE 90 (100)
T ss_dssp CCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEEC
T ss_pred hcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEE
Confidence 3344567777777 7799999999999999999999999999999999999999999999999999999999 6666
Q ss_pred cCCCC
Q 005263 91 QPVPS 95 (705)
Q Consensus 91 l~gg~ 95 (705)
+++..
T Consensus 91 lrg~~ 95 (100)
T 1wju_A 91 LKQSS 95 (100)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 66643
No 54
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.63 E-value=5.5e-16 Score=138.46 Aligned_cols=78 Identities=27% Similarity=0.383 Sum_probs=75.1
Q ss_pred CcEEEEEEeC---CCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 17 TTIEIKIKTL---DSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 17 ~tMqI~VKtL---~GKT~tLeVdp-sdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
..|+|+|+++ +|+++.++|++ ++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++++.
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~ 105 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRER 105 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSC
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcC
Confidence 5699999999 89999999998 9999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 005263 93 VP 94 (705)
Q Consensus 93 gg 94 (705)
++
T Consensus 106 GG 107 (111)
T 1we6_A 106 SG 107 (111)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 55
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=141.16 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=73.4
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCCC--CCCeEEEeCCeecCCCcccccccccCCC--
Q 005263 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGVL--SEQQRLICRGKVLKDDQLLSAYHVEDGH-- 83 (705)
Q Consensus 14 ~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIae------ktGIP--peqQRLIF~GKvLkDdkTLsDYGIedGS-- 83 (705)
.....|+|+||+++|+++.|+|++++||.+||++|++ ++++| +++|||||.||+|+|++||++|+|+.++
T Consensus 13 ~~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~ 92 (125)
T 2gow_A 13 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTT 92 (125)
T ss_dssp CCTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEE
T ss_pred CCCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCce
Confidence 3445799999999999999999999999999999999 77884 8999999999999999999999999776
Q ss_pred EEEEeeecCCC
Q 005263 84 TLHMVVRQPVP 94 (705)
Q Consensus 84 TIhLVlRl~gg 94 (705)
+|||++++..+
T Consensus 93 tlhlv~r~~~~ 103 (125)
T 2gow_A 93 VMHLVARETLP 103 (125)
T ss_dssp EEEEEECSCCS
T ss_pred EEEEEecCCCC
Confidence 78999998754
No 56
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=3e-15 Score=128.86 Aligned_cols=77 Identities=26% Similarity=0.423 Sum_probs=70.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCC-----CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCC-CcccccccccCCCEEEEee
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQ-----VPVPALKEQIASVTGVLSEQQRLICRGKVLKD-DQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdps-----dTV~eLKekIaektGIPpeqQRLIF~GKvLkD-dkTLsDYGIedGSTIhLVl 89 (705)
..+|+|+||+ .++++.++|+++ +||.+||++|++++|+|+++|||+|+||.|+| +++|.+|+|++|++|||+.
T Consensus 5 ~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 5 SSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 3579999999 589999999995 99999999999999999999999999999998 6689999999999999998
Q ss_pred ecCC
Q 005263 90 RQPV 93 (705)
Q Consensus 90 Rl~g 93 (705)
+...
T Consensus 84 ~~~~ 87 (92)
T 1wxv_A 84 KKNS 87 (92)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 7654
No 57
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=1.5e-15 Score=132.74 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=72.3
Q ss_pred CCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeee
Q 005263 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 11 ~se~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
.....+..|+|+||+ .+++|.|+|++++||.+||++|++++++|+++|||+|+||.| |+.+|.+|+|+++++|||+.+
T Consensus 10 ~~~~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 10 GGGVGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCCCCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCS
T ss_pred CCCCCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEec
Confidence 344456789999996 689999999999999999999999999999999999999999 555999999999999999986
Q ss_pred cCC
Q 005263 91 QPV 93 (705)
Q Consensus 91 l~g 93 (705)
...
T Consensus 88 ~~~ 90 (95)
T 1v86_A 88 TIS 90 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 58
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.60 E-value=8.5e-16 Score=141.29 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=65.2
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCccccccccc-------CCCEEEEeee
Q 005263 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVE-------DGHTLHMVVR 90 (705)
Q Consensus 19 MqI~VKtL~GK-T~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIe-------dGSTIhLVlR 90 (705)
|.++|+...++ ++.|+|++++||.+||++|++++|||+++|||+|+||+|+|+++|++|+|+ +++||||++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 44555554454 699999999999999999999999999999999999999999999999999 7999999999
No 59
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.60 E-value=1.6e-15 Score=131.03 Aligned_cols=76 Identities=26% Similarity=0.435 Sum_probs=71.5
Q ss_pred CCcEEEEEEeCCCcEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCeecCCCcccccccccCCCEEEEeeec
Q 005263 16 ETTIEIKIKTLDSQTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tL-eVdpsdTV~eLKekIaektGIPpeqQRLI---F~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
...|+|+||+ .+++|.| +|++++||.+||++|++++|+|+++|||+ |+||.|+|+++|++|+|++|++|||+...
T Consensus 5 ~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred CceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 4579999998 7899999 99999999999999999999999999999 99999999999999999999999999764
Q ss_pred C
Q 005263 92 P 92 (705)
Q Consensus 92 ~ 92 (705)
.
T Consensus 84 ~ 84 (90)
T 1v5t_A 84 E 84 (90)
T ss_dssp S
T ss_pred c
Confidence 3
No 60
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=3.3e-15 Score=131.17 Aligned_cols=75 Identities=21% Similarity=0.397 Sum_probs=70.5
Q ss_pred CCcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 16 ETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~-tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
..+|+|+||+ .+++| .|+|++++||.+||++|++++|+|+++|||+|+||.|+|+ +|++|+|++|++|||+....
T Consensus 5 ~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 5 SSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 4579999997 68999 6999999999999999999999999999999999999999 99999999999999998754
No 61
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=2.3e-15 Score=133.98 Aligned_cols=79 Identities=27% Similarity=0.334 Sum_probs=72.1
Q ss_pred CCcEEEEEEeCCC---cEEEEEec--------C-CCCHHHHHHHHHHHh--CCCCCC-eEEEeCCeecCCCccccccccc
Q 005263 16 ETTIEIKIKTLDS---QTYTLRVD--------K-QVPVPALKEQIASVT--GVLSEQ-QRLICRGKVLKDDQLLSAYHVE 80 (705)
Q Consensus 16 ~~tMqI~VKtL~G---KT~tLeVd--------p-sdTV~eLKekIaekt--GIPpeq-QRLIF~GKvLkDdkTLsDYGIe 80 (705)
...|+|+||+.++ +++.|+|+ + ++||.+||++|++++ ++|+++ |||+|+||.|+|+++|.+|+|+
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 3469999999998 89999954 4 499999999999999 999999 9999999999999999999999
Q ss_pred CCCEEEEeeecCCC
Q 005263 81 DGHTLHMVVRQPVP 94 (705)
Q Consensus 81 dGSTIhLVlRl~gg 94 (705)
+|++|||+++.+..
T Consensus 90 ~g~~i~lv~~~~~~ 103 (107)
T 1x1m_A 90 PGSTVHVLRKSWSG 103 (107)
T ss_dssp TTCEEEEEESSCCS
T ss_pred CCCEEEEEeCCCCC
Confidence 99999999987653
No 62
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.60 E-value=9.7e-16 Score=136.17 Aligned_cols=74 Identities=23% Similarity=0.355 Sum_probs=66.0
Q ss_pred CCCcEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHH-hCCC-CCCeEEEeCCeecCCCcccccc--cccCCCEEEEe
Q 005263 15 SETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASV-TGVL-SEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHMV 88 (705)
Q Consensus 15 ~~~tMqI~VKtL~GK--T~tLeVdpsdTV~eLKekIaek-tGIP-peqQRLIF~GKvLkDdkTLsDY--GIedGSTIhLV 88 (705)
....|+|+||+++++ ++.|+|++++||.+||++|+++ .|+| +++|||||+||+|+|+++|++| +|+++++|||+
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 446799999999988 6789999999999999999986 4665 5999999999999999999999 99999999986
No 63
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.59 E-value=1.4e-15 Score=139.81 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=67.7
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccC-------CCEEEEeee
Q 005263 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVED-------GHTLHMVVR 90 (705)
Q Consensus 19 MqI~VKtL~GK-T~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIed-------GSTIhLVlR 90 (705)
|.+||+...+| ++.++|++++||.+||++|++++|+|+++|||||+||+|+|++||++|||++ ++||||++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 56676666566 7889999999999999999999999999999999999999999999999999 999999999
Q ss_pred c
Q 005263 91 Q 91 (705)
Q Consensus 91 l 91 (705)
.
T Consensus 81 ~ 81 (118)
T 4ajy_B 81 A 81 (118)
T ss_dssp C
T ss_pred c
Confidence 6
No 64
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.59 E-value=3e-15 Score=139.02 Aligned_cols=79 Identities=25% Similarity=0.424 Sum_probs=72.4
Q ss_pred CCcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHH-----HHHhCCCC--CCeEEEeCCeecCCCcccccccccCC-----
Q 005263 16 ETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQI-----ASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDG----- 82 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~-tLeVdpsdTV~eLKekI-----aektGIPp--eqQRLIF~GKvLkDdkTLsDYGIedG----- 82 (705)
.+.|+|+||+++|+.+ .+++++++||.+||++| ++++++|+ ++|||||.||+|+|++||++|+|.++
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 3689999999999888 69999999999999999 45678987 89999999999999999999999998
Q ss_pred -CEEEEeeecCCC
Q 005263 83 -HTLHMVVRQPVP 94 (705)
Q Consensus 83 -STIhLVlRl~gg 94 (705)
.||||++++.++
T Consensus 94 v~tmhlVlrl~g~ 106 (126)
T 1se9_A 94 VTTMHVIIQAPVT 106 (126)
T ss_dssp CEEEEEEECCCSS
T ss_pred cEEEEEEeccCCc
Confidence 789999998865
No 65
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.59 E-value=2.2e-15 Score=147.99 Aligned_cols=78 Identities=36% Similarity=0.493 Sum_probs=75.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
-.|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.++
T Consensus 104 ~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 104 YGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred cceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 459999999999999999999999999999999999999999999999999999999999999999999999999875
No 66
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=142.87 Aligned_cols=78 Identities=36% Similarity=0.526 Sum_probs=71.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
..|.|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|.+|+|++|++|||++|++++
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999998763
No 67
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.58 E-value=5.4e-15 Score=132.99 Aligned_cols=78 Identities=22% Similarity=0.398 Sum_probs=73.6
Q ss_pred CcEEEEEEeC----------CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEE
Q 005263 17 TTIEIKIKTL----------DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLH 86 (705)
Q Consensus 17 ~tMqI~VKtL----------~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIh 86 (705)
..|+|+|+.. +|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++||
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4699999986 378999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCC
Q 005263 87 MVVRQPVP 94 (705)
Q Consensus 87 LVlRl~gg 94 (705)
|++++.++
T Consensus 104 lv~rl~GG 111 (115)
T 1we7_A 104 LALKERSG 111 (115)
T ss_dssp EEECCCSC
T ss_pred EEEEcCCC
Confidence 99999875
No 68
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.58 E-value=6e-15 Score=134.93 Aligned_cols=78 Identities=36% Similarity=0.526 Sum_probs=74.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
..|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||+++++++
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 459999999999999999999999999999999999999999999999999999999999999999999999998763
No 69
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.58 E-value=8.7e-16 Score=135.95 Aligned_cols=75 Identities=37% Similarity=0.669 Sum_probs=69.3
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
...|+|+||+ +|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.
T Consensus 26 ~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 26 AMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp ---CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred CcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 3568899998 89999999999999999999999999999999999999999999999999999999999999864
No 70
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=133.83 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=74.1
Q ss_pred CCCCCcEEEEEE-eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 13 ESSETTIEIKIK-TLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 13 e~~~~tMqI~VK-tL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
.-.+..|.|+|+ ...++.+.++++++.||.+||++|+++.++|+++|||+|+||.|+|+.||.+|||++|+||||+++.
T Consensus 10 ~~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 10 SVEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp CCCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred cccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 334556889988 5568899999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 005263 92 PV 93 (705)
Q Consensus 92 ~g 93 (705)
..
T Consensus 90 ~~ 91 (118)
T 2daf_A 90 TN 91 (118)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 71
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.57 E-value=6.9e-15 Score=132.77 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=72.2
Q ss_pred CCCCCCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccc-cCCCEEEEe
Q 005263 12 AESSETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMV 88 (705)
Q Consensus 12 se~~~~tMqI~VKtL~G--KT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGI-edGSTIhLV 88 (705)
....+-.|+|+|++..+ .+++++|++++||.+||++|++++|+|+++|||+|+||+|+|+++|.+||| ++|++|||+
T Consensus 18 ~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~ 97 (105)
T 4dbg_A 18 SPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLY 97 (105)
T ss_dssp --CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEE
T ss_pred CCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEE
Confidence 34445679999999874 789999999999999999999999999999999999999999999999999 599999999
Q ss_pred eec
Q 005263 89 VRQ 91 (705)
Q Consensus 89 lRl 91 (705)
+..
T Consensus 98 l~~ 100 (105)
T 4dbg_A 98 LLS 100 (105)
T ss_dssp ECC
T ss_pred EEe
Confidence 864
No 72
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.57 E-value=2e-16 Score=144.99 Aligned_cols=77 Identities=36% Similarity=0.538 Sum_probs=0.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~ 95 (705)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++++.++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998864
No 73
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.54 E-value=1.5e-14 Score=123.93 Aligned_cols=73 Identities=32% Similarity=0.508 Sum_probs=67.1
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeee
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
.++.+.++ ++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+.+
T Consensus 11 ~~~~~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 11 STIKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred CcEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 45665554 48999999999999999999999999999999999999999999999999999999999999874
No 74
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.51 E-value=1.1e-15 Score=145.30 Aligned_cols=77 Identities=36% Similarity=0.547 Sum_probs=0.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~ 95 (705)
|+|+||+++|+++.|+|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|++|++|||++++.++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998874
No 75
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.50 E-value=1.5e-14 Score=154.55 Aligned_cols=79 Identities=29% Similarity=0.500 Sum_probs=72.1
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH---HhCCCCCCeEEEeCCeecCCCcccccccccCCCEE-EEeeec
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS---VTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTL-HMVVRQ 91 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIae---ktGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTI-hLVlRl 91 (705)
+..|+|+||+++|++|.|+|++++||.+||++|++ ++||++++|||||+||+|+|+++|.+|+|++|++| ||+.|.
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 46799999999999999999999999999999999 67899999999999999999999999999999999 666666
Q ss_pred CCC
Q 005263 92 PVP 94 (705)
Q Consensus 92 ~gg 94 (705)
+++
T Consensus 85 ~~~ 87 (368)
T 1oqy_A 85 KAG 87 (368)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 76
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.5e-14 Score=126.79 Aligned_cols=75 Identities=11% Similarity=0.151 Sum_probs=68.3
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF--~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
.|.++++...|++|.|+|++++||.+||++|++++|||+++|||+| .|+ |+|+++|++|+|++|++|||++....
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 5777777779999999999999999999999999999999999996 566 99999999999999999999987543
No 77
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.47 E-value=1.7e-13 Score=120.89 Aligned_cols=76 Identities=20% Similarity=0.385 Sum_probs=68.2
Q ss_pred CCCCCcEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC--Ce---ec-CCCcccccccccCCCE
Q 005263 13 ESSETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR--GK---VL-KDDQLLSAYHVEDGHT 84 (705)
Q Consensus 13 e~~~~tMqI~VKtL~GK--T~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~--GK---vL-kDdkTLsDYGIedGST 84 (705)
..+...+.|+|+...++ .+.++|++++||.+||++|++++|||+++|||+|. || .| +|+++|++|+|++|++
T Consensus 10 ~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gst 89 (95)
T 2kjr_A 10 HGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLR 89 (95)
T ss_dssp CCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCE
T ss_pred cCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCE
Confidence 34567899999987664 88999999999999999999999999999999998 55 44 8999999999999999
Q ss_pred EEEe
Q 005263 85 LHMV 88 (705)
Q Consensus 85 IhLV 88 (705)
|||+
T Consensus 90 ihlv 93 (95)
T 2kjr_A 90 LHVV 93 (95)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 78
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=6e-14 Score=121.79 Aligned_cols=72 Identities=22% Similarity=0.293 Sum_probs=65.7
Q ss_pred CCcEEEEEEeCCCcEE--EE-EecCCCCHHHHHHHHHH-HhCCCCCCeEEEeC--CeecCCCcccccccccCCCEEEE
Q 005263 16 ETTIEIKIKTLDSQTY--TL-RVDKQVPVPALKEQIAS-VTGVLSEQQRLICR--GKVLKDDQLLSAYHVEDGHTLHM 87 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~--tL-eVdpsdTV~eLKekIae-ktGIPpeqQRLIF~--GKvLkDdkTLsDYGIedGSTIhL 87 (705)
-..|+|+||++.|+.+ .| +|++++||.+||++|++ +.++++++|||+|. ||.|+|+++|++|+|+++++|||
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 4469999999988765 58 99999999999999999 48999999999976 99999999999999999999876
No 79
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.45 E-value=1.6e-13 Score=143.73 Aligned_cols=80 Identities=35% Similarity=0.538 Sum_probs=73.9
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 13 e~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
......|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|++
T Consensus 228 ~~~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 228 AGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp ESSCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred cCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999863
No 80
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.44 E-value=9.9e-14 Score=120.19 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=65.8
Q ss_pred cEEEEEEeC--CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe-------CCeecCCCcccccccccCCCEEEEe
Q 005263 18 TIEIKIKTL--DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC-------RGKVLKDDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 18 tMqI~VKtL--~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF-------~GKvLkDdkTLsDYGIedGSTIhLV 88 (705)
.++|.|... +.+.+.+++++++||.+||++|+.++|+|+++|||+| .||.|+|+++|.+|+|++|++|||+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 356666543 4567889999999999999999999999999999997 4889999999999999999999999
Q ss_pred eecC
Q 005263 89 VRQP 92 (705)
Q Consensus 89 lRl~ 92 (705)
-+.|
T Consensus 82 d~~P 85 (86)
T 4b6w_A 82 DLQP 85 (86)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 7643
No 81
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.41 E-value=4.9e-13 Score=118.52 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=67.2
Q ss_pred CCCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe---e----cCCCcccccccccCCCEE
Q 005263 15 SETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK---V----LKDDQLLSAYHVEDGHTL 85 (705)
Q Consensus 15 ~~~tMqI~VKtL~G--KT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GK---v----LkDdkTLsDYGIedGSTI 85 (705)
.+..+.|+|++... +.+.++|++++||.+||++|++++|||+++|||+|.|| . ++|+++|.+|+|++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 34668999988554 47899999999999999999999999999999999883 3 589999999999999999
Q ss_pred EEeee
Q 005263 86 HMVVR 90 (705)
Q Consensus 86 hLVlR 90 (705)
||+-.
T Consensus 91 hlvd~ 95 (97)
T 2kj6_A 91 HIIDL 95 (97)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99853
No 82
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.41 E-value=3e-13 Score=120.72 Aligned_cols=74 Identities=15% Similarity=0.237 Sum_probs=68.2
Q ss_pred CcEEEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-----------e----cCCCccccccccc
Q 005263 17 TTIEIKIKTLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGK-----------V----LKDDQLLSAYHVE 80 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVd-psdTV~eLKekIaektGIPpeqQRLIF~GK-----------v----LkDdkTLsDYGIe 80 (705)
..|.|+||+.+|+. .|+|+ +++||.+||++|++++++|+++|||+|.|+ . ++|+++|.+|+|+
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 34999999999976 79999 999999999999999999999999999988 4 5899999999999
Q ss_pred CCCEEEEeeec
Q 005263 81 DGHTLHMVVRQ 91 (705)
Q Consensus 81 dGSTIhLVlRl 91 (705)
+|++|||+...
T Consensus 85 ~G~~L~l~~~~ 95 (107)
T 1wf9_A 85 HGSMVYLAYEG 95 (107)
T ss_dssp TTCEEECCCSS
T ss_pred CCCEEEEEeCC
Confidence 99999999874
No 83
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=6.7e-13 Score=116.83 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=75.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 15 ~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
....|+|+||+.+|+.+.++|.+++++..||++++++.|++++++||+|.|+.|++++|+.+|++++|++|+|++++.++
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999998876
No 84
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.39 E-value=9.9e-13 Score=120.00 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=67.3
Q ss_pred CcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---ee----cCCCcccccccccCCCEEEEe
Q 005263 17 TTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 17 ~tMqI~VKtL~GK-T~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~G---Kv----LkDdkTLsDYGIedGSTIhLV 88 (705)
..|.|+|++.... .+.++|++++||.+||++|+.++|||+++|||+|.| +. ++|+++|.+|+|++|++|||+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 4699999986553 688999999999999999999999999999999987 42 489999999999999999999
Q ss_pred eecC
Q 005263 89 VRQP 92 (705)
Q Consensus 89 lRl~ 92 (705)
...+
T Consensus 85 d~~p 88 (122)
T 1t0y_A 85 DVTG 88 (122)
T ss_dssp ECTT
T ss_pred eCCC
Confidence 8543
No 85
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=6.7e-13 Score=115.66 Aligned_cols=75 Identities=21% Similarity=0.336 Sum_probs=66.5
Q ss_pred CcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---ee----cCCCcccccccccCCCEEEEe
Q 005263 17 TTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 17 ~tMqI~VKtL~GK-T~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~G---Kv----LkDdkTLsDYGIedGSTIhLV 88 (705)
..|.|+|++.... .+.++|++++||.+||++|++++|+|+++|||+|.| +. ++|+++|.+|+|++|++|||+
T Consensus 6 ~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred cEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 3489999986553 688999999999999999999999999999999986 43 589999999999999999998
Q ss_pred eec
Q 005263 89 VRQ 91 (705)
Q Consensus 89 lRl 91 (705)
-..
T Consensus 86 d~~ 88 (95)
T 1v6e_A 86 DHS 88 (95)
T ss_dssp CCS
T ss_pred ECC
Confidence 643
No 86
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.38 E-value=3.6e-14 Score=139.69 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=0.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg~s 96 (705)
|+|+||+++|+++.|+|++++||.+||++|++++|||+++|||+|+|++|+|+++|+ +++||||++++.++..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~ 73 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKK 73 (189)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCcc
Confidence 899999999999999999999999999999999999999999999999999999999 8999999999987643
No 87
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.33 E-value=6.7e-12 Score=112.68 Aligned_cols=82 Identities=16% Similarity=0.319 Sum_probs=77.7
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 14 ~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
.....|+|+|++.+|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.+++|+.+|++++|++|+|++++.+
T Consensus 20 ~~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 20 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp SCSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 005263 94 PS 95 (705)
Q Consensus 94 g~ 95 (705)
+.
T Consensus 100 G~ 101 (104)
T 1wz0_A 100 GP 101 (104)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 88
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=8.5e-12 Score=109.41 Aligned_cols=78 Identities=17% Similarity=0.315 Sum_probs=75.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
..|+|+||+.+|+.+.+.|.+++++..||++++++.|++++++||+|+|+.|++++|..+|++++|++|++++++.++
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998875
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.31 E-value=6.5e-12 Score=110.13 Aligned_cols=80 Identities=16% Similarity=0.322 Sum_probs=73.9
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 14 ~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
.....|.|+|++.+|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.+++|+.+|++++|++|++++++.+
T Consensus 13 ~~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp --CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999998865
No 90
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.25 E-value=2.3e-11 Score=109.77 Aligned_cols=80 Identities=23% Similarity=0.302 Sum_probs=74.3
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 13 e~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
......|+|+|++ +|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.+++|..+|++++|++|+|++++.
T Consensus 26 ~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 26 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp CCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 3455779999999 999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred C
Q 005263 93 V 93 (705)
Q Consensus 93 g 93 (705)
+
T Consensus 105 G 105 (106)
T 2eke_C 105 G 105 (106)
T ss_dssp -
T ss_pred c
Confidence 5
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.25 E-value=6.5e-12 Score=107.42 Aligned_cols=72 Identities=22% Similarity=0.354 Sum_probs=64.8
Q ss_pred EEEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeC--CeecC---CCcccccccccCCCEEEEeeec
Q 005263 19 IEIKIKTLDSQTYTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICR--GKVLK---DDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 19 MqI~VKtL~GKT~tLe-VdpsdTV~eLKekIaektGIPpeqQRLIF~--GKvLk---DdkTLsDYGIedGSTIhLVlRl 91 (705)
|+|+||+.+|+. .++ |++++||.+||++|++++|+++++|||+|+ +|.|+ |+++|++|||.+|++|||....
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 789999999965 477 999999999999999999999999999987 48874 7899999999999999998654
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.24 E-value=2.7e-11 Score=100.99 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=69.4
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEee
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
.|+|+|++.+|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|++++|.++|++++|++|++++
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999974
No 93
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.24 E-value=2.1e-11 Score=110.70 Aligned_cols=82 Identities=13% Similarity=0.279 Sum_probs=77.0
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 13 e~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
......|.|+|++.+|+.+.+.|.+++++..||++++++.|++++++||+|.|+.|.+++|+.+|++++|++|+|++.+.
T Consensus 21 ~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~ 100 (110)
T 2k8h_A 21 KEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQT 100 (110)
T ss_dssp CCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCC
T ss_pred CCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEccc
Confidence 33456799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 005263 93 VP 94 (705)
Q Consensus 93 gg 94 (705)
++
T Consensus 101 Gg 102 (110)
T 2k8h_A 101 GG 102 (110)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 94
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.24 E-value=6.3e-12 Score=131.97 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=68.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI---F~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
.+.|+|+||+ .|++|.++|++++||.+||++|++++|||+++|||+ |+||+|+|+.+|++|+|++|++|||+....
T Consensus 3 ~~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp -CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 3569999998 799999999999999999999999999999999999 899999999999999999999999996543
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.23 E-value=5.2e-11 Score=101.32 Aligned_cols=74 Identities=11% Similarity=0.294 Sum_probs=70.5
Q ss_pred CCCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEe
Q 005263 15 SETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 15 ~~~tMqI~VKtL~GK-T~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLV 88 (705)
....|+|+|++.+|+ .+.+.|.+++++..||++++++.|++++++||+|.|+.|.+++|+.+|++++|++|+++
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 346799999999996 89999999999999999999999999999999999999999999999999999999986
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.05 E-value=6.3e-10 Score=97.08 Aligned_cols=76 Identities=22% Similarity=0.269 Sum_probs=66.5
Q ss_pred CCcEEEEEEe---CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC------ee-c-CCCcccccccccCCCE
Q 005263 16 ETTIEIKIKT---LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG------KV-L-KDDQLLSAYHVEDGHT 84 (705)
Q Consensus 16 ~~tMqI~VKt---L~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~G------Kv-L-kDdkTLsDYGIedGST 84 (705)
...++|+|++ .+++.+.+.+.+++||.+||.+|+..+|+|+..|||+|.+ .. | +|.++|.+|+|++|++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 4568898886 4678899999999999999999999999999999999873 22 4 6789999999999999
Q ss_pred EEEeeec
Q 005263 85 LHMVVRQ 91 (705)
Q Consensus 85 IhLVlRl 91 (705)
|||....
T Consensus 87 I~V~d~~ 93 (97)
T 1wjn_A 87 LLVRWSG 93 (97)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9998754
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.88 E-value=8.7e-09 Score=94.51 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=73.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
...|+|+|+..+|+.+.+.|.+++++..|++.++++.|++++.+||+|.|+.|.++.|..+|++++|++|++++.+.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998764
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.73 E-value=3.7e-08 Score=97.90 Aligned_cols=82 Identities=22% Similarity=0.299 Sum_probs=76.3
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 14 ~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
.+...|+|+|+. +|+.+.+.|.+++++..||+.++++.|++++++||+|.|+.|.+++|..+|++++|++|++++.+.+
T Consensus 25 ~~~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 25 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp CCCCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred CCCCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 456779999985 8999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 005263 94 PSS 96 (705)
Q Consensus 94 g~s 96 (705)
+..
T Consensus 104 g~k 106 (200)
T 3pge_A 104 GGG 106 (200)
T ss_dssp CC-
T ss_pred CcC
Confidence 653
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.71 E-value=2.2e-08 Score=99.29 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=74.5
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 14 ~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
++...|.|+|+. +|+.+.+.|.+++++..|++..+++.|++++.+||+|+|+.|.+++|..+|+++||++|++++.+.+
T Consensus 53 dp~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 53 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp --CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred CCCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 456789999985 8999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C
Q 005263 94 P 94 (705)
Q Consensus 94 g 94 (705)
+
T Consensus 132 G 132 (207)
T 3tix_A 132 G 132 (207)
T ss_dssp T
T ss_pred C
Confidence 5
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.43 E-value=2.7e-08 Score=99.75 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=1.0
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 12 se~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
...+...|.|+| ..+|+.+.++|.+++++..||+..+++.|++++.+|++|+|+.|.+++|.++++++||++|++++.+
T Consensus 15 ~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 15 EVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecc
Confidence 344567899999 7789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 005263 92 PVPS 95 (705)
Q Consensus 92 ~gg~ 95 (705)
.++.
T Consensus 94 ~GG~ 97 (227)
T 3v7o_A 94 IGGL 97 (227)
T ss_dssp --CC
T ss_pred cCCc
Confidence 8863
No 101
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.28 E-value=3.1e-07 Score=78.57 Aligned_cols=71 Identities=13% Similarity=0.245 Sum_probs=60.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee---c--CCCcccccccccCCCEEEEe
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV---L--KDDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKv---L--kDdkTLsDYGIedGSTIhLV 88 (705)
+.|.|.||+.+| ++.|+|++++||.+||++|+++++++++.|.|.+.-.. | .++.+|+++||++|++|+|.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 358999999876 67889999999999999999999999988877655443 3 47889999999999999874
No 102
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.22 E-value=5.9e-06 Score=73.62 Aligned_cols=76 Identities=12% Similarity=0.319 Sum_probs=70.4
Q ss_pred CCCCCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEe
Q 005263 13 ESSETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 13 e~~~~tMqI~VKtL~GK-T~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLV 88 (705)
......|.|+|+..+++ .+.+.|.+++++..|....+++.+++++..||+|.|+.|..+.|..++++++|++|.++
T Consensus 20 ~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 20 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 44557799999998884 88999999999999999999999999999999999999999999999999999999885
No 103
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.14 E-value=6.5e-06 Score=81.52 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=75.5
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 13 e~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
..+...|.|+|+. +++.+.++|..++++..||+..+++.|++++++||+|.|+.+.+++|..++.++++++|.++.++.
T Consensus 16 ~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~ 94 (209)
T 3uf8_A 16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (209)
T ss_dssp --CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCT
T ss_pred eCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccc
Confidence 3456789999998 788889999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 005263 93 VPS 95 (705)
Q Consensus 93 gg~ 95 (705)
++.
T Consensus 95 Gg~ 97 (209)
T 3uf8_A 95 GGS 97 (209)
T ss_dssp TCC
T ss_pred ccc
Confidence 764
No 104
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.08 E-value=1.8e-05 Score=68.53 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=68.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeCCeecCCCcccccccccCCCEEEEee
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpe-qQRLIF~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
.-|.+.++......+.++|.++.+|.+|-+...++.+|+++ ..||.|.|..|+.+.++.+|+++||+.|.+++
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45778888888888999999999999999999999999999 89999999999999999999999999999986
No 105
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.99 E-value=8.3e-07 Score=94.96 Aligned_cols=82 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 12 se~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
...+...|.|+|+. +|+.+.+.|..++++..||+..+++.|++++.+|++|+|+.|.+++|.+++++++|++|++++.+
T Consensus 15 ~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence 34456789999998 68888999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 005263 92 PVP 94 (705)
Q Consensus 92 ~gg 94 (705)
.++
T Consensus 94 ~g~ 96 (360)
T 3ix6_A 94 IGG 96 (360)
T ss_dssp ---
T ss_pred Cch
Confidence 874
No 106
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.91 E-value=1.4e-06 Score=92.60 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 15 ~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
....|.|+|+. +++.+.+.|..++++..||+..+++.|++.+++|++|+|+.|.+++|..++++++|++|.+++.+.++
T Consensus 27 ~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 45678888888 77888899999999999999999999999999999999999999999999999999999999998875
No 107
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.89 E-value=9.1e-05 Score=66.08 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeee
Q 005263 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 12 se~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
.......|.|+|+. +|....+.|..++....|.+..+++.|+.++..|++|.|..+.++.|-.+++++++++|.+++.
T Consensus 15 ~~~~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 15 LPETPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp CCSCCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred CCCCCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 34455679999996 7899999999999999999999999999999999999999999999999999999999999875
No 108
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.76 E-value=8.2e-05 Score=66.20 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=52.3
Q ss_pred EEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec--CCCcccccccc-cCCCEEEEee
Q 005263 20 EIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL--KDDQLLSAYHV-EDGHTLHMVV 89 (705)
Q Consensus 20 qI~VKtL~-GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvL--kDdkTLsDYGI-edGSTIhLVl 89 (705)
-|+|-.+. .+.+.+.+.+++||..||++|++++|||+++|+|+|.||.| +..+.-..|-- ....-|.|+-
T Consensus 14 vvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 14 VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred eEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 34554443 67889999999999999999999999999999999999876 44444555533 2334455543
No 109
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.35 E-value=0.00024 Score=66.41 Aligned_cols=71 Identities=25% Similarity=0.317 Sum_probs=59.8
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-------------------------------------CeEEE
Q 005263 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-------------------------------------QQRLI 62 (705)
Q Consensus 20 qI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpe-------------------------------------qQRLI 62 (705)
.|+|+.++|+..++.|+.+.+|.+++..|+.+.||+.. .++|-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58999999999999999999999999999999998854 34443
Q ss_pred e--CCeecCCCcccccccccCCCEEEEeee
Q 005263 63 C--RGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 63 F--~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
. ....|+++++|.++||.++++|.|-.+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 2 125678899999999999999776544
No 110
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.13 E-value=0.00079 Score=58.36 Aligned_cols=70 Identities=21% Similarity=0.339 Sum_probs=59.7
Q ss_pred cEEEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCCeecCCCcccccccccCCCEEEE
Q 005263 18 TIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (705)
Q Consensus 18 tMqI~VKt--L~GKT~tLeVdpsdTV~eLKekIaektGIPp-----eqQRLIF~GKvLkDdkTLsDYGIedGSTIhL 87 (705)
-|.|+|.. -.+++|.|++....||.+|++.+.+.+++.. ...|+.-++..|.+++.|+||+|.+|+.|.+
T Consensus 4 yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 4 YIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 46677765 3589999999999999999999999988655 2347778899999999999999999999876
No 111
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.03 E-value=0.0013 Score=58.09 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=70.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
.-|.|.|-..+++..++.|.+++++.++-++..+|+|+.+++-.|.|++|.|+-...+.-.||-+|.+|.|+.+...
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999986543
No 112
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.95 E-value=0.0037 Score=53.22 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=63.2
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeec---CCCcccccccccCCCEEEEee
Q 005263 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVL---KDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 15 ~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI--F~GKvL---kDdkTLsDYGIedGSTIhLVl 89 (705)
.+...+|.||..+|+.+.-.+..++||.+|+..|.. .+.+....+|+ |-.|.| +.+++|.++|+.+..+|+|-.
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 345689999999999998899999999999999988 56777888988 557888 347899999999999988854
No 113
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.88 E-value=7.9e-05 Score=66.78 Aligned_cols=63 Identities=8% Similarity=-0.014 Sum_probs=46.1
Q ss_pred eecCCCcccccccccCCCEEEEeeecCCCCCCCCccccCCCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 66 KVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 66 KvLkDdkTLsDYGIedGSTIhLVlRl~gg~sts~~qI~v~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
+.|.-.+...+-||- ||++.++.. -..++.+.++|++++||..||.+|+ ++|+|+++|||||+
T Consensus 2 ~k~~~~~~f~~tg~a---ti~V~~~~~-----------~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~ 65 (100)
T 1wju_A 2 SSGSSGDNYRTTGIA---TIEVFLPPR-----------LKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN 65 (100)
T ss_dssp CCCCCCCSSSCCCEE---EEEEECCTT-----------TCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET
T ss_pred CcchhhhhhhhcceE---EEEEEecCC-----------CCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC
Confidence 444444455555553 555544221 1235778999999999999999999 99999999999988
No 114
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=96.85 E-value=2.1e-05 Score=66.47 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=39.2
Q ss_pred ccCCCEEEEeeecCCCCCCCCccccC--CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 79 VEDGHTLHMVVRQPVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 79 IedGSTIhLVlRl~gg~sts~~qI~v--~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
+.++++++++++.+. .+++++ ..|+.+.++|.+++||.+||.+|+ +.|+|+++|||+|+
T Consensus 2 ~~~~~~~~~~~~~~~-----~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 63 (88)
T 4eew_A 2 MEPNDSTSTAVEEPD-----SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 63 (88)
T ss_dssp -------------CC-----EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCCceEEeecCCC-----eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 445667777765432 355554 678889999999999999999999 89999999999985
No 115
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.85 E-value=2.1e-05 Score=69.82 Aligned_cols=43 Identities=5% Similarity=-0.075 Sum_probs=38.6
Q ss_pred ccccC--CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 100 ~qI~v--~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
++|++ ..|+.+.++|++++||++||.+|. ++|+|+++|||+|+
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 34544 688999999999999999999999 99999999999985
No 116
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=96.80 E-value=0.00019 Score=70.82 Aligned_cols=39 Identities=5% Similarity=-0.012 Sum_probs=0.0
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfav 143 (705)
++|++++++|++++||++||.+|+ .+|||+++|||||+.
T Consensus 8 L~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~G 47 (189)
T 2xzm_9 8 LEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNG 47 (189)
T ss_dssp ----------------------------------------
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecC
Confidence 678899999999999999999999 999999999999973
No 117
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.79 E-value=0.0087 Score=53.77 Aligned_cols=77 Identities=13% Similarity=0.186 Sum_probs=65.2
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC--C-CcccccccccCCCEEEEeee
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK--D-DQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI--F~GKvLk--D-dkTLsDYGIedGSTIhLVlR 90 (705)
....+|.||..+|+.+.-.+..++||.+|.+-|....+.+.....|+ |--|.|. | +++|.++|+.+..+|++...
T Consensus 11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 44689999999999999999999999999999999887776777777 5678885 3 68999999999988887765
Q ss_pred cC
Q 005263 91 QP 92 (705)
Q Consensus 91 l~ 92 (705)
..
T Consensus 91 ~~ 92 (109)
T 2dzk_A 91 GR 92 (109)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 118
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.49 E-value=7.6e-05 Score=66.89 Aligned_cols=43 Identities=5% Similarity=-0.130 Sum_probs=38.1
Q ss_pred ccccC--CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 100 ~qI~v--~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
|.+++ ..|+.++++|.+++||++||.+|+ ++|+|+++|||+|+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 34444 568899999999999999999999 99999999999987
No 119
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.00013 Score=63.28 Aligned_cols=38 Identities=8% Similarity=-0.076 Sum_probs=34.5
Q ss_pred CCCCCcccccc--cccccccccccc-c-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVA--PSVVIETFNLPD-R-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~--pSdTIe~LKvkI-q-keGIPpdqQRLIfa 142 (705)
..|+.++++|+ +++||.+||.+| + ++|+|+++|||||+
T Consensus 9 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 50 (87)
T 2lxa_A 9 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK 50 (87)
T ss_dssp CSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET
T ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC
Confidence 67788888866 999999999999 7 89999999999997
No 120
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.28 E-value=0.013 Score=53.85 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=63.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeec--CC-CcccccccccCCCEEEEee
Q 005263 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVL--KD-DQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 15 ~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI--F~GKvL--kD-dkTLsDYGIedGSTIhLVl 89 (705)
.....+|.||..+|+.+.-.+..++||.+|...|... +.+.....|+ |-.|.| .| +++|.++|+.+..+|+|..
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 3467899999999999999999999999999999887 7777788887 568888 33 7999999999988887764
Q ss_pred e
Q 005263 90 R 90 (705)
Q Consensus 90 R 90 (705)
.
T Consensus 119 ~ 119 (124)
T 1wj4_A 119 S 119 (124)
T ss_dssp C
T ss_pred c
Confidence 3
No 121
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.00017 Score=63.65 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=36.9
Q ss_pred CcccccccccCCCEEEEeeecCCCCCCCCccccC-CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 71 DQLLSAYHVEDGHTLHMVVRQPVPSSSDGTHNLP-GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 71 dkTLsDYGIedGSTIhLVlRl~gg~sts~~qI~v-~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
...++||.| ++|.+|.++..- .+.+++ ..|+.+.++|.+++||.+||.+|+ ..|+|+++|||+|+
T Consensus 7 ~~~~~~~~~--~~t~~l~l~~~m-----~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 73 (101)
T 3m63_B 7 HHPMSDYDI--PTTENLYFQGAM-----SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 73 (101)
T ss_dssp -----------------------------CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET
T ss_pred cCCccccCC--CcceeecccCCc-----EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 356788887 567776654221 123333 478889999999999999999999 89999999999985
No 122
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=95.03 E-value=0.001 Score=54.12 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=35.2
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+|+.+.++|.+++||.+||.+|+ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 46 (76)
T 3b1l_X 8 NSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFA 46 (76)
Confidence 567788899999999999999999 89999999999986
No 123
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.83 E-value=0.042 Score=49.15 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=62.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC--CCcccccccccCCCEEEEeee
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK--DDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI--F~GKvLk--DdkTLsDYGIedGSTIhLVlR 90 (705)
....+|.||..+|+.+.-.+..++||.+|..-|..+ +......+|+ |-.|.|. .++||.++||.+..+|+|..+
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 467999999999999999999999999999999865 5556677886 5578885 468999999999888877654
No 124
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=95.81 E-value=0.0002 Score=59.08 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=35.3
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+|+.+.++|.+++||.+||.+|+ ++|+|+++|||+|+
T Consensus 12 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 50 (79)
T 3phx_B 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (79)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC
Confidence 567888999999999999999999 89999999999985
No 125
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=95.75 E-value=0.00015 Score=66.74 Aligned_cols=34 Identities=9% Similarity=-0.081 Sum_probs=32.3
Q ss_pred Cccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 109 tiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
+++++|++++||.+||.+|+ ++|||+++|||||+
T Consensus 13 ti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~ 47 (118)
T 2fnj_B 13 TIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKD 47 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 57899999999999999999 99999999999987
No 126
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=95.72 E-value=0.00024 Score=60.09 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=35.4
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+|+.+.++|.+++||.+||.+|+ ++|+|+++|||+|+
T Consensus 13 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 51 (90)
T 4dwf_A 13 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 51 (90)
T ss_dssp TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 567888999999999999999999 89999999999986
No 127
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.69 E-value=0.0003 Score=62.77 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=34.2
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIf 141 (705)
..|+.++++|++++||++||.+|+ ++|||+++|+|+|
T Consensus 16 ~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~ 53 (100)
T 2dzm_A 16 YRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKG 53 (100)
T ss_dssp CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEEC
T ss_pred eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEc
Confidence 567889999999999999999999 9999999999864
No 128
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.59 E-value=0.00026 Score=60.36 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=35.7
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||++||.+|+ ++|+|+++|||+|+
T Consensus 18 l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 18 LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred cCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 678889999999999999999999 99999999999986
No 129
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=95.58 E-value=0.0021 Score=58.62 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+|+++.++|.+++||.+||.+|+ ..|+|+++|+|+|.
T Consensus 8 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (128)
T 3u5e_m 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (128)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC
Confidence 577889999999999999999999 99999999999986
No 130
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=95.51 E-value=0.028 Score=59.10 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=74.6
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC----CCCCCeEEEe------CCeecCCCcccccccccCCCEEEE
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG----VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHM 87 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektG----IPpeqQRLIF------~GKvLkDdkTLsDYGIedGSTIhL 87 (705)
.+.++|... +-+.++.+++++||.++..+|.++.. .+.++--|.. +|+-|++.++|..|++++|+.|+.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeec
Confidence 466777765 77788999999999999999988874 3566767776 456799999999999999999988
Q ss_pred eeecCCCCCCCCccccCCCCCCccccccccccccccc
Q 005263 88 VVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFN 124 (705)
Q Consensus 88 VlRl~gg~sts~~qI~v~tGrtiTl~V~pSdTIe~LK 124 (705)
..+... ..+...+|....+.|+.+.++..+-
T Consensus 82 ~~~~~~------~~V~l~dg~~~~~~vd~~tt~~el~ 112 (371)
T 3ivf_A 82 RKKQRP------LKIRMLDGTVKTIMVDDSKTVTDML 112 (371)
T ss_dssp EECEEE------EEEECTTSCEEEEEEETTSBHHHHH
T ss_pred cCceeE------EEEECcCCCEEEEEECCCCCHHHHH
Confidence 754321 1233366777777777766655443
No 131
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.48 E-value=0.038 Score=50.94 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=58.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHh-CCCCCCeEEE--eCCeecCC-CcccccccccCCCEE
Q 005263 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVT-GVLSEQQRLI--CRGKVLKD-DQLLSAYHVEDGHTL 85 (705)
Q Consensus 15 ~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaekt-GIPpeqQRLI--F~GKvLkD-dkTLsDYGIedGSTI 85 (705)
.....+|.||..+|+.+.-.+..++||.+|++.|.... +.......|+ |-.|.|+| ++||.++|+.+...|
T Consensus 49 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 49 AEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp TSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 34568999999999999999999999999999998864 3555677787 55788965 699999999885443
No 132
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=95.45 E-value=0.00078 Score=59.23 Aligned_cols=36 Identities=6% Similarity=-0.006 Sum_probs=33.0
Q ss_pred CCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 107 GrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
++.+.++|.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 27 ~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 27 AVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp CEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred ceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 3467889999999999999999 99999999999985
No 133
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=95.38 E-value=0.00064 Score=56.78 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=35.1
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||.+||.+|+ +.|+|++.|||+|.
T Consensus 20 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 58 (88)
T 3dbh_I 20 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 58 (88)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 567888999999999999999999 89999999999985
No 134
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=95.34 E-value=0.0028 Score=60.22 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+|+.+.++|.+++||.+||.+|+ .+|||+++|||+|+
T Consensus 8 l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (152)
T 3u5c_f 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (152)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 567888999999999999999999 89999999999997
No 135
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=95.22 E-value=0.0019 Score=55.72 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=30.7
Q ss_pred CCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 108 rtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
+..-..+.+++||+.||.+|+ ++|+|+++|||+|.
T Consensus 15 ~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 15 RVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp CEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred eEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 334577899999999999999 99999999999963
No 136
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=95.21 E-value=0.00049 Score=58.63 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=35.3
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+|+++.++|.+++||.+||.+|+ ..|+|+++|||+|+
T Consensus 8 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 46 (88)
T 4fbj_B 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (88)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC
Confidence 567888999999999999999999 89999999999986
No 137
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=95.20 E-value=0.0005 Score=63.41 Aligned_cols=34 Identities=6% Similarity=-0.089 Sum_probs=32.1
Q ss_pred Cccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 109 tiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
++.++|++++||.+||.+|+ ++|+|+++|||||+
T Consensus 13 TI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~ 47 (118)
T 4ajy_B 13 TIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKD 47 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeC
Confidence 67789999999999999999 99999999999986
No 138
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.00091 Score=59.23 Aligned_cols=38 Identities=8% Similarity=-0.062 Sum_probs=35.5
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 9 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 9 FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 567888999999999999999999 99999999999986
No 139
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=95.13 E-value=0.00079 Score=57.39 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=38.3
Q ss_pred CccccC--CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 99 ~~qI~v--~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.|++++ .+|+.+.++|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 17 ~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 63 (91)
T 3v6c_B 17 SMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 63 (91)
T ss_dssp SEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC
Confidence 344444 678889999999999999999999 89999999999985
No 140
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=95.11 E-value=0.0011 Score=58.52 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=32.3
Q ss_pred CCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 108 rtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
+.+.+.|.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 467789999999999999999 99999999999984
No 141
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.10 E-value=0.06 Score=47.48 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=63.9
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC---CeecCCCcccccccccCCCEEEEee
Q 005263 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR---GKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 14 ~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~---GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
-++.++++.|.....++..++|++..++.+|--.|.+|+.+.+++-.|.-. +..|+-+++|.||||++ |+.+=
T Consensus 6 ~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d 81 (91)
T 2daj_A 6 SGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMD 81 (91)
T ss_dssp CCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEE
T ss_pred CCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheec
Confidence 355889999999988999999999999999999999999999999988754 46789999999999986 55543
No 142
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=95.04 E-value=0.00054 Score=59.58 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=35.5
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+|+.+.++|.++++|..||.+|+ ++|||+++|||+|+
T Consensus 29 ~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~ 67 (97)
T 1wyw_B 29 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 67 (97)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 567888999999999999999999 99999999999997
No 143
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=94.89 E-value=0.00056 Score=56.38 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=35.1
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+|+.+.++|.++++|..||.+++ ++|+|+++|||+|+
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~ 49 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 49 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC
Confidence 567788999999999999999999 99999999999986
No 144
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.80 E-value=0.15 Score=46.67 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=53.5
Q ss_pred CCcEEEEEEeCC--CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC----CeecCCC----------
Q 005263 16 ETTIEIKIKTLD--SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR----GKVLKDD---------- 71 (705)
Q Consensus 16 ~~tMqI~VKtL~--GKT~tLeVdpsdTV~eLKekIaekt--GIP------peqQRLIF~----GKvLkDd---------- 71 (705)
-.+|.|+|-..+ +..+.+.|-..+||.++|+||.+.. |+| ++++.|-+. |+.|.|.
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence 356778876543 4567888889999999999997643 443 356667763 4666552
Q ss_pred ---cccccccccCCCEEEEeee
Q 005263 72 ---QLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 72 ---kTLsDYGIedGSTIhLVlR 90 (705)
.||..|+|.||.+|-|+.+
T Consensus 89 krLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEEEC
T ss_pred eEecchhhcCCCCCCEEEEEeC
Confidence 3789999999999988754
No 145
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=94.70 E-value=0.0013 Score=56.48 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=35.4
Q ss_pred ccccC-CCCCCccc-cccccccccccccccc-CCCCCchhHHHH
Q 005263 100 THNLP-GTSRSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIV 140 (705)
Q Consensus 100 ~qI~v-~tGrtiTl-~V~pSdTIe~LKvkIq-keGIPpdqQRLI 140 (705)
+.+++ ..++.+.+ +|.+++||.+||.+|+ ++|||+++|||+
T Consensus 8 m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 8 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp CCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred EEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 44444 35677888 9999999999999999 999999999999
No 146
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.62 E-value=0.12 Score=49.06 Aligned_cols=77 Identities=21% Similarity=0.246 Sum_probs=54.4
Q ss_pred CCcEEEEEEeCC------CcEEEEEecCCCCHHHHHHHHHHHh--CCCC------CCeEEEe----CCee-cCCC-----
Q 005263 16 ETTIEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVT--GVLS------EQQRLIC----RGKV-LKDD----- 71 (705)
Q Consensus 16 ~~tMqI~VKtL~------GKT~tLeVdpsdTV~eLKekIaekt--GIPp------eqQRLIF----~GKv-LkDd----- 71 (705)
-.+|.|+|-..+ ...+.+.|-..+||.++|+||.+.. ++|. ++.-|-+ .|++ |.|.
T Consensus 22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccc
Confidence 356888876653 2568899999999999999997653 4443 4455554 2443 6543
Q ss_pred --------cccccccccCCCEEEEeeecC
Q 005263 72 --------QLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 72 --------kTLsDYGIedGSTIhLVlRl~ 92 (705)
.||..|+|.+|.+|-|+.+..
T Consensus 102 ~~~~wkrLNTL~HY~V~Dga~l~l~~~~~ 130 (138)
T 2r2o_A 102 VQGLWRRLNTLQHYKVPDGATVALVPCLT 130 (138)
T ss_dssp EETTEEECCBHHHHTCCTTCEEEEEEC--
T ss_pred ccCCceeecchhccCCCCCCEEEEEECCC
Confidence 289999999999999988754
No 147
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.60 E-value=0.0012 Score=55.18 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=34.7
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..++.+.++|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 15 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 53 (87)
T 1wh3_A 15 PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ 53 (87)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC
Confidence 457788899999999999999999 89999999999985
No 148
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=94.60 E-value=0.0015 Score=57.91 Aligned_cols=38 Identities=8% Similarity=-0.045 Sum_probs=32.4
Q ss_pred CCCCCccc--ccccccccccccccc-c-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGS--HVAPSVVIETFNLPD-R-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl--~V~pSdTIe~LKvkI-q-keGIPpdqQRLIfa 142 (705)
..|+.+++ +|.+++||..||.+| + ++|+|+++|||||+
T Consensus 27 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 68 (98)
T 4a20_A 27 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK 68 (98)
T ss_dssp CSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET
T ss_pred CCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC
Confidence 55666666 556999999999999 7 88999999999986
No 149
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.59 E-value=0.0019 Score=59.06 Aligned_cols=38 Identities=5% Similarity=0.041 Sum_probs=33.9
Q ss_pred CCCCCccccccccccccccccccc-------CCCC--CchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGV--PSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-------keGI--PpdqQRLIfa 142 (705)
.+|++++++|++++||++||.+|+ ++++ |+++|||||+
T Consensus 24 l~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~ 70 (116)
T 1wgh_A 24 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ 70 (116)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC
Confidence 678899999999999999999998 3575 6999999998
No 150
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=94.54 E-value=0.0011 Score=56.25 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=34.5
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+|+.+.++|.+++||++||.+|+ .+|+|+++|||+|.
T Consensus 12 ~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 50 (88)
T 2hj8_A 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (88)
T ss_dssp TTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 456778899999999999999999 99999999999985
No 151
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=94.36 E-value=0.001 Score=54.60 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=33.8
Q ss_pred CCCCCc-ccc-ccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSH-GSH-VAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrti-Tl~-V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+ .++ |.+++||++||.+|+ ++|+|+++|||+|+
T Consensus 10 ~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~ 50 (78)
T 2faz_A 10 MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR 50 (78)
T ss_dssp TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 456774 888 999999999999999 89999999999985
No 152
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.33 E-value=0.0013 Score=57.44 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=33.1
Q ss_pred CCCCc-cccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 106 TSRSH-GSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 106 tGrti-Tl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.++.+ .++|.+++||.+||.+|+ ++|||+++|||+|.
T Consensus 15 ~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~ 53 (96)
T 1wgg_A 15 GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVK 53 (96)
T ss_dssp TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEET
T ss_pred CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 35677 599999999999999999 99999999999974
No 153
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=94.13 E-value=0.0011 Score=57.28 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=37.2
Q ss_pred ccccCCCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 100 THNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 100 ~qI~v~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
+++++-.|+.+.++|.+++||++||.+|+ +.|+|+++|||+|+
T Consensus 20 m~I~Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 20 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp CEEEEESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred EEEEEECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence 45555347788899999999999999999 89999999999986
No 154
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=94.06 E-value=0.0015 Score=55.55 Aligned_cols=44 Identities=20% Similarity=0.353 Sum_probs=38.1
Q ss_pred CccccC--CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 99 ~~qI~v--~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
+|+|++ ..|+.+.++|.+++||.+||.+|. ..|+|++.|||+|.
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 55 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA 55 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEEC
Confidence 355554 778889999999999999999999 89999999999985
No 155
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.05 E-value=0.0022 Score=53.89 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=33.9
Q ss_pred CCC-CCccc-cccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTS-RSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tG-rtiTl-~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..| +.+.+ +|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 15 ~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 15 IDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp TTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET
T ss_pred CCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 456 57889 5999999999999999 89999999999985
No 156
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.03 E-value=0.0025 Score=54.60 Aligned_cols=34 Identities=3% Similarity=-0.161 Sum_probs=29.6
Q ss_pred Cccccccccccccccccccc-CC--CCCchhHHHHHH
Q 005263 109 SHGSHVAPSVVIETFNLPDR-GD--GVPSEISQIVSA 142 (705)
Q Consensus 109 tiTl~V~pSdTIe~LKvkIq-ke--GIPpdqQRLIfa 142 (705)
.+.++|.+++||.+||.+|+ ++ ++|+++|||||+
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~ 57 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS 57 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC
Confidence 45566779999999999999 66 999999999986
No 157
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=93.86 E-value=0.0018 Score=55.24 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=35.1
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+|+.+.++|.+++||.+||.+|+ ..|+|++.|||+|.
T Consensus 9 ~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 47 (96)
T 3k9o_B 9 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 47 (96)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC
Confidence 567788899999999999999999 89999999999986
No 158
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=93.85 E-value=0.002 Score=55.95 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=35.3
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 30 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 68 (98)
T 4hcn_B 30 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 68 (98)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 678888999999999999999999 89999999999985
No 159
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=93.78 E-value=0.0032 Score=58.23 Aligned_cols=38 Identities=5% Similarity=0.022 Sum_probs=34.1
Q ss_pred CCCCCccccccccccccccccccc-------CCCCC--chhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGVP--SEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-------keGIP--pdqQRLIfa 142 (705)
.+|++++++|.+++||++||.+|+ ++|+| +++|||||+
T Consensus 25 l~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~ 71 (125)
T 2gow_A 25 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ 71 (125)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS
T ss_pred CCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC
Confidence 567889999999999999999998 46884 899999998
No 160
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=93.77 E-value=0.003 Score=52.05 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.4
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||.+||.+|. ..++|++.|||+|.
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~ 49 (85)
T 3mtn_B 11 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 456778899999999999999999 89999999999985
No 161
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=93.72 E-value=0.0016 Score=58.80 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=32.8
Q ss_pred CCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 107 GrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
...++++|.+++||..||.+|+ ++|||+++|||+|.
T Consensus 36 ~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~g 72 (105)
T 4dbg_A 36 TVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIG 72 (105)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEecc
Confidence 3578899999999999999999 99999999998865
No 162
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=93.69 E-value=0.0032 Score=58.59 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=33.7
Q ss_pred CCCCCc-ccccccccccccccccc-----c-CCCCCc--hhHHHHHH
Q 005263 105 GTSRSH-GSHVAPSVVIETFNLPD-----R-GDGVPS--EISQIVSA 142 (705)
Q Consensus 105 ~tGrti-Tl~V~pSdTIe~LKvkI-----q-keGIPp--dqQRLIfa 142 (705)
.+|+.+ .+.+++++||++||.+| + ++|+|+ ++|||||+
T Consensus 24 ~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~ 70 (126)
T 1se9_A 24 TDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA 70 (126)
T ss_dssp TTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET
T ss_pred CCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC
Confidence 567667 68999999999999999 6 899997 89999998
No 163
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.65 E-value=0.0029 Score=51.83 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=34.2
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||.+||.+|+ ..|+|++.|||+|.
T Consensus 15 ~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 53 (81)
T 2dzi_A 15 LQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK 53 (81)
T ss_dssp TTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 456778899999999999999999 89999999999985
No 164
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=93.64 E-value=0.003 Score=55.95 Aligned_cols=34 Identities=6% Similarity=-0.047 Sum_probs=29.4
Q ss_pred Cccccccccccccccccccc--CCCCCc-hhHHHHHH
Q 005263 109 SHGSHVAPSVVIETFNLPDR--GDGVPS-EISQIVSA 142 (705)
Q Consensus 109 tiTl~V~pSdTIe~LKvkIq--keGIPp-dqQRLIfa 142 (705)
.++++|.+++||..||.+|+ .+|+|+ ++|||||+
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~ 73 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS 73 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC
Confidence 46788899999999999999 367775 99999986
No 165
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=93.55 E-value=0.0022 Score=55.63 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=31.8
Q ss_pred Cccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 109 tiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+.++|.+++||++||.+|+ ++|+|+++|||+|.
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 60 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 67899999999999999999 89999999999985
No 166
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.54 E-value=0.0023 Score=55.18 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=34.3
Q ss_pred CCCCCccccccccccccccccccc-C---CCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-k---eGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||.+||.+|. . +|+|+++|||+|+
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~ 49 (95)
T 1uel_A 8 LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA 49 (95)
T ss_dssp TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC
Confidence 457788899999999999999999 5 8999999999986
No 167
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.52 E-value=0.0025 Score=55.39 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=33.4
Q ss_pred CCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 106 tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.++.+.++|.+++||.+||.+|+ ..|||+++|||+|.
T Consensus 25 ~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~ 62 (95)
T 1v86_A 25 NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYK 62 (95)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSS
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 45677899999999999999999 99999999999964
No 168
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.48 E-value=0.4 Score=47.99 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=58.4
Q ss_pred EEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEe-CC----eecCC-CcccccccccCCCEEEEee
Q 005263 19 IEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLIC-RG----KVLKD-DQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 19 MqI~VKtL~GK--T~tLeVdpsdTV~eLKekIaektGIPpe-qQRLIF-~G----KvLkD-dkTLsDYGIedGSTIhLVl 89 (705)
+.|++...... .+++.++..+||.+||+++.+.++|+.+ +.||-. .+ ..|.| +++|.+++|.++..|.|=+
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~ 219 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEP 219 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEE
Confidence 44555443322 3557789999999999999999999997 688864 32 45665 6899999999999999988
Q ss_pred ecCCC
Q 005263 90 RQPVP 94 (705)
Q Consensus 90 Rl~gg 94 (705)
+...+
T Consensus 220 r~~dg 224 (231)
T 3jyu_A 220 QNEDG 224 (231)
T ss_dssp CCTTS
T ss_pred ecCCC
Confidence 86554
No 169
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=93.46 E-value=0.0023 Score=53.18 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=34.2
Q ss_pred CCCCCccccccccccccccccccc-C---CCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-k---eGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||.+||.+|+ . +|+|+++|||+|.
T Consensus 13 ~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 13 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC
Confidence 457788899999999999999999 4 8999999999985
No 170
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.41 E-value=0.0035 Score=54.88 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=33.7
Q ss_pred CCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 106 tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.++.++++|.+++||++||.+|+ ++|||+++|||+|.
T Consensus 20 ~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (102)
T 1v5o_A 20 TEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM 57 (102)
T ss_dssp CCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence 34678899999999999999999 99999999999985
No 171
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.33 E-value=0.0031 Score=55.64 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=35.0
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||..||.+|+ +.|+|+++|||+|.
T Consensus 31 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 69 (106)
T 1ttn_A 31 STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS 69 (106)
T ss_dssp TTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC
Confidence 467788899999999999999999 99999999999985
No 172
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.31 E-value=0.42 Score=47.38 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=58.0
Q ss_pred EEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEE--e-CC--eecCC-CcccccccccCCCEEEEee
Q 005263 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLI--C-RG--KVLKD-DQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 19 MqI~VKtL~G--KT~tLeVdpsdTV~eLKekIaektGIPpe-qQRLI--F-~G--KvLkD-dkTLsDYGIedGSTIhLVl 89 (705)
+.|++..... ..+++.++..+||.+|++++.+.++++.+ +.||- | .+ ..|+| ++||.+++|.++..|.|-+
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence 4455554432 23567889999999999999999999997 68875 3 33 35655 6899999999999999988
Q ss_pred ecCCC
Q 005263 90 RQPVP 94 (705)
Q Consensus 90 Rl~gg 94 (705)
+...+
T Consensus 208 r~~dg 212 (217)
T 4a3p_A 208 KNEDG 212 (217)
T ss_dssp CCCC-
T ss_pred ecCCC
Confidence 86543
No 173
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=93.30 E-value=0.0023 Score=51.49 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.4
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||.+||.+|. ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 457778899999999999999999 89999999999985
No 174
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=93.16 E-value=0.0018 Score=53.54 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=34.4
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..++.+.++|.+++||.+||.+|+ ..++|++.|||+|.
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~ 49 (85)
T 3n3k_B 11 LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 456778899999999999999999 89999999999986
No 175
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=93.12 E-value=0.0013 Score=58.59 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.3
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||..||.+|. ..|+|+++|||+|.
T Consensus 43 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 81 (111)
T 2ojr_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC
Confidence 456778899999999999999999 89999999999985
No 176
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=93.10 E-value=0.0027 Score=60.83 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=35.7
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+|+.+.++|.+++||.+||.+|+ ++|+|+++|||+|+
T Consensus 8 ~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (169)
T 3l0w_B 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (169)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 677888999999999999999999 89999999999987
No 177
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=92.46 E-value=0.0042 Score=61.10 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=35.7
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+|+++.++|.+++||.+||.+|+ ++|+|+++|+|+|+
T Consensus 113 l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~ 151 (189)
T 3q3f_A 113 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 151 (189)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC
Confidence 678889999999999999999999 89999999999986
No 178
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=92.37 E-value=0.0061 Score=54.05 Aligned_cols=53 Identities=9% Similarity=0.078 Sum_probs=41.3
Q ss_pred cCCCEEEEeeecCCCCCCCCccccCCCCCCccccccc-cccccccccccc-CCCCCchhHHHHHH
Q 005263 80 EDGHTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAP-SVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 80 edGSTIhLVlRl~gg~sts~~qI~v~tGrtiTl~V~p-SdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+...|.|.++.+.. ..|+.+.++|.+ ++||.+||.+|+ ..|+|+++|+|+|.
T Consensus 23 ~~~~~i~i~Vk~~~~----------~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 23 QHPGPATIRVSKPNE----------NDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK 77 (111)
T ss_dssp HCCSCEEEEECCTTC----------SSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS
T ss_pred hCCCcEEEEEEeccc----------CCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 334456666654310 156778899998 999999999999 99999999999984
No 179
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=92.33 E-value=1.2 Score=36.61 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=49.4
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
.|+|+|... .....+++....||.+|.+++ +++.+...+..+|+.+..+. -|++|+.|.++--.
T Consensus 4 ~m~i~vNg~-~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V 67 (70)
T 1ryj_A 4 GMKFTVITD-DGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVI 67 (70)
T ss_dssp CEEEEEEET-TEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECT
T ss_pred eEEEEEeCc-cCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEecc
Confidence 488888774 344567788889999999876 56777778889999987654 68899999987543
No 180
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=92.17 E-value=0.0058 Score=52.69 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.5
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||.+||.+|. ..|+|++.|||+|.
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~ 46 (98)
T 1yx5_B 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (98)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 456778899999999999999999 89999999999985
No 181
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=92.02 E-value=0.62 Score=43.56 Aligned_cols=74 Identities=19% Similarity=0.265 Sum_probs=51.9
Q ss_pred cEEEEEEeC--CCcEEEEEecCCCCHHHHHHHHHHHh--CCCC------CCeEEEe-CC---ee-cCCC-----------
Q 005263 18 TIEIKIKTL--DSQTYTLRVDKQVPVPALKEQIASVT--GVLS------EQQRLIC-RG---KV-LKDD----------- 71 (705)
Q Consensus 18 tMqI~VKtL--~GKT~tLeVdpsdTV~eLKekIaekt--GIPp------eqQRLIF-~G---Kv-LkDd----------- 71 (705)
++.|+|-.. ++..+.+.|-..+||.++|+||.+.. ++|. +++.|-+ .| +. |.|.
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 455554432 34567888889999999999997643 4443 5677776 23 33 6541
Q ss_pred --cccccccccCCCEEEEeeec
Q 005263 72 --QLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 72 --kTLsDYGIedGSTIhLVlRl 91 (705)
.||..|+|.||.+|-|+.+.
T Consensus 84 rLNTL~HY~V~dgatv~l~~~~ 105 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSLID 105 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEECC
T ss_pred EeccccccCCCCCCEEEEEEcc
Confidence 37899999999999998764
No 182
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=92.01 E-value=0.0046 Score=55.14 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=35.0
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.+.|.+++||..||.+|+ +.|+|+++|||+|.
T Consensus 43 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 81 (111)
T 3vdz_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC
Confidence 567788899999999999999999 89999999999985
No 183
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=91.97 E-value=0.0048 Score=55.39 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=35.6
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||.+||.+|+ ..|+|+++|||+|+
T Consensus 17 l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 17 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 678889999999999999999999 89999999999985
No 184
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.96 E-value=0.0071 Score=52.31 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=31.4
Q ss_pred Cccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 109 tiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+.++|.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 46789999999999999999 99999999999984
No 185
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=91.94 E-value=0.95 Score=39.23 Aligned_cols=69 Identities=13% Similarity=0.221 Sum_probs=50.8
Q ss_pred CcEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-C----------CCCCeEEEeCCeecCCCccccccc
Q 005263 17 TTIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-V----------LSEQQRLICRGKVLKDDQLLSAYH 78 (705)
Q Consensus 17 ~tMqI~VKtL~------G-KT~tLeVdpsdTV~eLKekIaektG-I----------PpeqQRLIF~GKvLkDdkTLsDYG 78 (705)
..|+|+||... | +...+++....||.+|.+.+..++. + ......+..+|+.+.. ++-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 56999999984 3 4667888788999999999987642 1 1234567788887753 677
Q ss_pred ccCCCEEEEeee
Q 005263 79 VEDGHTLHMVVR 90 (705)
Q Consensus 79 IedGSTIhLVlR 90 (705)
|++|+.|.++-.
T Consensus 83 L~dGDeV~i~pp 94 (98)
T 1vjk_A 83 LKDGDVVGVFPP 94 (98)
T ss_dssp CCTTCEEEEESC
T ss_pred CCCCCEEEEECC
Confidence 899999988753
No 186
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.73 E-value=0.014 Score=50.38 Aligned_cols=38 Identities=11% Similarity=-0.037 Sum_probs=31.7
Q ss_pred CCCCCc--cc-cccccccccccccccc--CCCCCchhHHHHHH
Q 005263 105 GTSRSH--GS-HVAPSVVIETFNLPDR--GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrti--Tl-~V~pSdTIe~LKvkIq--keGIPpdqQRLIfa 142 (705)
..|+.+ ++ +|.+++||.+||.+|+ ++|+|+++|||+|.
T Consensus 18 ~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~ 60 (88)
T 2dzj_A 18 AKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLD 60 (88)
T ss_dssp SSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESS
T ss_pred CCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEec
Confidence 444444 36 8999999999999999 48999999999874
No 187
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=91.71 E-value=0.0048 Score=49.53 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.0
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||.+||.+|. ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 3a9j_A 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 456778899999999999999999 89999999999985
No 188
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=91.68 E-value=0.0068 Score=54.17 Aligned_cols=57 Identities=7% Similarity=0.082 Sum_probs=44.3
Q ss_pred CEEEEeeecCCCCCCCCccccCCCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 83 HTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 83 STIhLVlRl~gg~sts~~qI~v~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|.|.++.+...... ..-..|+.+.++|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 24 ~~i~l~V~~p~~~~~~---~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~ 81 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKT---EWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE 81 (115)
T ss_dssp SCEEEEEEECCCSSSC---SSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEET
T ss_pred CCEEEEEEcCCCcccc---ccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEC
Confidence 4677777765421110 111678889999999999999999999 89999999999985
No 189
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.62 E-value=0.44 Score=43.96 Aligned_cols=75 Identities=25% Similarity=0.410 Sum_probs=52.5
Q ss_pred CcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHh--CCCC------CCeEEEe-CC---e-ecCC---------C
Q 005263 17 TTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVT--GVLS------EQQRLIC-RG---K-VLKD---------D 71 (705)
Q Consensus 17 ~tMqI~VKtL~---GKT~tLeVdpsdTV~eLKekIaekt--GIPp------eqQRLIF-~G---K-vLkD---------d 71 (705)
.+|.|+|-..+ ...+.+.|-..+||.++|+||.+.. ++|. ++..|-+ .| + .|.| .
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 91 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEND 91 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCc
Confidence 46777765543 3457888889999999999996642 4443 4566665 23 3 3543 1
Q ss_pred ----cccccccccCCCEEEEeeec
Q 005263 72 ----QLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 72 ----kTLsDYGIedGSTIhLVlRl 91 (705)
.||.+|+|.+|.+|-|+.+.
T Consensus 92 wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 92 WKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred ceEeccccccCCCCCCEEEEEeCC
Confidence 37899999999999998764
No 190
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=91.58 E-value=0.79 Score=39.95 Aligned_cols=71 Identities=13% Similarity=0.219 Sum_probs=52.7
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-----ecCCCcccccc--cccCCCEEEEee
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-----VLKDDQLLSAY--HVEDGHTLHMVV 89 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GK-----vLkDdkTLsDY--GIedGSTIhLVl 89 (705)
..|+|+|.+. .++.|+|.+..+..+|+++|.++.+++++...|.|+.+ ++..+..|.+. .++++ .|.|.+
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~-~LtL~C 80 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY-CLTLWC 80 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBTT-EEEEEE
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhccCC-cEEEEE
Confidence 4488888885 69999999999999999999999999999999999863 23333333322 22344 566666
Q ss_pred e
Q 005263 90 R 90 (705)
Q Consensus 90 R 90 (705)
+
T Consensus 81 ~ 81 (83)
T 1oey_A 81 E 81 (83)
T ss_dssp C
T ss_pred e
Confidence 4
No 191
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.38 E-value=0.0093 Score=50.81 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=31.6
Q ss_pred CCCcccccccc-----ccccccccccc-CCCCCchhHHHHHH
Q 005263 107 SRSHGSHVAPS-----VVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 107 GrtiTl~V~pS-----dTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
++.+.++|.++ .||.+||.+|+ ..|+|+++|||+|.
T Consensus 16 ~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 16 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 45667888885 99999999999 89999999999974
No 192
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.23 E-value=0.0083 Score=51.38 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=33.3
Q ss_pred CCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 107 GrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
++.+.++|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 62 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT 62 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 6677899999999999999999 89999999999985
No 193
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.22 E-value=0.0034 Score=56.48 Aligned_cols=38 Identities=5% Similarity=-0.159 Sum_probs=31.9
Q ss_pred ccccC--CCCCCccccccccccccccccccc-CCCCCchhH
Q 005263 100 THNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEIS 137 (705)
Q Consensus 100 ~qI~v--~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQ 137 (705)
|.+++ ++|+.+.++|.+++||++||.+|+ ++++|++.|
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q 48 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQERE 48 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccc
Confidence 44444 788999999999999999999999 888988543
No 194
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=90.70 E-value=0.013 Score=51.30 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=32.7
Q ss_pred CCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 107 GrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
|+.+.++|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 70 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA 70 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 4567789999999999999999 89999999999985
No 195
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=90.63 E-value=0.0067 Score=51.53 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=33.9
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||++||.+|+ ..|+|+++|||+|.
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK 57 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 456677889999999999999999 89999999999975
No 196
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=90.40 E-value=0.0072 Score=49.00 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=33.1
Q ss_pred CCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 106 tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.|+.+.++|.+++||.+||.+|+ ..|+|++.|||+|.
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 35567889999999999999999 89999999999975
No 197
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=90.32 E-value=0.009 Score=52.38 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=30.9
Q ss_pred ccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 110 iTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
+.++|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 34 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 34 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 67 (100)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5789999999999999999 89999999999985
No 198
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=90.08 E-value=0.016 Score=53.11 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=33.3
Q ss_pred CCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 107 GrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
++.+.++|.+++||.+||.+|+ +.|+|+++|||+|.
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 6677899999999999999999 89999999999986
No 199
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=89.94 E-value=0.61 Score=39.24 Aligned_cols=62 Identities=11% Similarity=0.248 Sum_probs=47.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeee
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
|+|+||....+...+++....||.+|- ++.+++++.-.+..+|+.+..+. +.+|++|.++--
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~ 62 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRL 62 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEe
Confidence 788998875555668999999998876 45789998887888999886554 335888887643
No 200
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=89.48 E-value=0.024 Score=51.37 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=31.2
Q ss_pred Cccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 109 tiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+.+.+.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 46688999999999999999 99999999999983
No 201
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=89.33 E-value=1.8 Score=40.45 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=49.8
Q ss_pred CCcEEEEEEe---CC------CcEEEEEecCCCCHHHHHHHHHHH----hCCCC----CCeEEEeC-C---eecCC----
Q 005263 16 ETTIEIKIKT---LD------SQTYTLRVDKQVPVPALKEQIASV----TGVLS----EQQRLICR-G---KVLKD---- 70 (705)
Q Consensus 16 ~~tMqI~VKt---L~------GKT~tLeVdpsdTV~eLKekIaek----tGIPp----eqQRLIF~-G---KvLkD---- 70 (705)
-.++.|+|-. .. ...+.+.|-..+||.++|+||.+. .++|. +++.|-+. | +.|.|
T Consensus 17 y~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~t 96 (126)
T 3kuz_A 17 QGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSS 96 (126)
T ss_dssp CCEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTT
T ss_pred eEEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCc
Confidence 3567788776 32 246888999999999999999542 46654 34455441 2 23322
Q ss_pred ------C----cccccccccCCCEEEEee
Q 005263 71 ------D----QLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 71 ------d----kTLsDYGIedGSTIhLVl 89 (705)
. .||..|+|.+|.+|-|+.
T Consensus 97 S~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 97 SVILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CCBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred ceEecCCeeEeccccccCCCCCCEEEEee
Confidence 1 367889999999998764
No 202
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=89.17 E-value=0.02 Score=50.70 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=31.2
Q ss_pred CCCCCcccccc-ccccccccccccc-CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVA-PSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~-pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+|+. .++|+ +++||.+||.+|+ +.|||+++|||++.
T Consensus 15 ~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~ 53 (107)
T 1wf9_A 15 RDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN 53 (107)
T ss_dssp SSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS
T ss_pred CCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC
Confidence 34443 57899 9999999999999 99999999999653
No 203
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.78 E-value=0.025 Score=49.58 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=30.9
Q ss_pred ccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 110 iTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
+.++|.+++||.+||.+|+ ..|+|+++|||+|.
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5789999999999999999 89999999999986
No 204
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=88.70 E-value=2.3 Score=37.42 Aligned_cols=51 Identities=8% Similarity=0.106 Sum_probs=42.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeCCe
Q 005263 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICRGK 66 (705)
Q Consensus 15 ~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeq-QRLIF~GK 66 (705)
....|+|++.. +|+.+.+.|+++.+..+|.++|.+.+++..++ ..|.|...
T Consensus 3 ~~~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 3 LGSQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp CSSCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCCeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 34568999877 57899999999999999999999999988655 67778764
No 205
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=88.65 E-value=1.1 Score=36.78 Aligned_cols=69 Identities=7% Similarity=0.187 Sum_probs=46.7
Q ss_pred EEEEEEeCCC-cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 19 IEIKIKTLDS-QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 19 MqI~VKtL~G-KT~tLeVdpsdTV~eLKekIaektGIPp--eqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
|+|+||.... +.-.+++ ...||.+|++.+..+.++.. +...+..+|+.+.+ .++-|++|+.|.++-...
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppvs 72 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVC 72 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCC
Confidence 6788887742 1134666 56899999999987543322 44567778877543 356789999999886443
No 206
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=87.53 E-value=0.015 Score=51.67 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=34.8
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfav 143 (705)
.....+.+.+.+.++|..||..|+ ++|||+++|+|+|..
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg 60 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEG 60 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 445567899999999999999999 999999999999874
No 207
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.39 E-value=0.03 Score=47.86 Aligned_cols=36 Identities=6% Similarity=-0.045 Sum_probs=30.5
Q ss_pred CCCCCcccccccccccccccccccCCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDRGDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIqkeGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||.+||.+|+... +++|||+|.
T Consensus 15 ~~g~~~~~~v~~~~TV~~LK~~i~~~~--~~~qrLi~~ 50 (95)
T 1wia_A 15 LNDTEELAVARPEDTVGTLKSKYFPGQ--ESQMKLIYQ 50 (95)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHSSST--TTTCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHhhC--cCcEEEEEC
Confidence 456778899999999999999999333 899999985
No 208
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=87.28 E-value=4.2 Score=34.16 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=43.5
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-C-----C-----CCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 29 QTYTLRVDKQVPVPALKEQIASVTG-V-----L-----SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 29 KT~tLeVdpsdTV~eLKekIaektG-I-----P-----peqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
+...+++....||.+|++.+..++. + . ....++..+|+...+ ++-|++|+.|.++-...
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~ 87 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVS 87 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCC
Confidence 5677888878999999999988753 1 1 022577788888764 56688999999886443
No 209
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=86.83 E-value=0.036 Score=58.36 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=38.3
Q ss_pred CccccC--CCCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 99 ~~qI~v--~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+++++ ..|+.+.++|.+++||.+||.+|+ +.|+|+++|||+|.
T Consensus 233 ~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~ 279 (307)
T 3ai5_A 233 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279 (307)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC
Confidence 345444 568889999999999999999999 89999999999985
No 210
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=85.42 E-value=0.043 Score=48.44 Aligned_cols=35 Identities=9% Similarity=-0.061 Sum_probs=29.3
Q ss_pred CCcccc--------cccc-ccccccccccc-CC--CCCchh-HHHHHH
Q 005263 108 RSHGSH--------VAPS-VVIETFNLPDR-GD--GVPSEI-SQIVSA 142 (705)
Q Consensus 108 rtiTl~--------V~pS-dTIe~LKvkIq-ke--GIPpdq-QRLIfa 142 (705)
+.+.++ |+++ +||..||.+|+ ++ |+|+++ |||+|.
T Consensus 26 ~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~ 73 (107)
T 1x1m_A 26 PKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC 73 (107)
T ss_dssp CCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET
T ss_pred cEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC
Confidence 456666 5565 99999999999 77 999999 999986
No 211
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=85.00 E-value=1.9 Score=37.50 Aligned_cols=68 Identities=6% Similarity=0.034 Sum_probs=44.6
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 14 SSETTIEIKIKTLDSQTYTLRVDKQ-VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 14 ~~~~tMqI~VKtL~GKT~tLeVdps-dTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
-....|+|+| +|+.+. +... .||.+|.+.+ +++++...+..+|+.+..+ ...++.|++||.|.++--.
T Consensus 16 ~~~~~M~I~v---NGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V 84 (87)
T 1tyg_B 16 HIGGRHMLQL---NGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFV 84 (87)
T ss_dssp ------CEEE---TTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEEC
T ss_pred CCCcceEEEE---CCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEccc
Confidence 3445677665 566544 5565 8999998876 5667777888999987543 3445678999999998643
No 212
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=84.87 E-value=2.1 Score=37.77 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=55.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecC
Q 005263 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 30 T~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~ 92 (705)
.+.-.++-..++..||+.++.+.++..+.-.+...+..|+++++|-|-+|+-...+.+.+...
T Consensus 4 vi~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 4 CVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred hhhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence 344567778999999999999999999999999999999999999999999888888877643
No 213
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=84.59 E-value=0.046 Score=58.73 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=34.3
Q ss_pred CCCCCccccccccccccccccccc----CCCCCchhHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR----GDGVPSEISQIVSA 142 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq----keGIPpdqQRLIfa 142 (705)
..|+.+.++|.+++||.+||.+|+ ++|||+++|||||.
T Consensus 15 l~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~ 56 (368)
T 1oqy_A 15 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 56 (368)
T ss_dssp TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEEC
Confidence 567888999999999999999998 27899999999997
No 214
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=84.27 E-value=5.3 Score=36.12 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=49.8
Q ss_pred CcEEEEEEeCC------C--cEEEEEecC---CCCHHHHHHHHHHHhCCCCCCeEEEeC-Ce------ecCCCc---cc-
Q 005263 17 TTIEIKIKTLD------S--QTYTLRVDK---QVPVPALKEQIASVTGVLSEQQRLICR-GK------VLKDDQ---LL- 74 (705)
Q Consensus 17 ~tMqI~VKtL~------G--KT~tLeVdp---sdTV~eLKekIaektGIPpeqQRLIF~-GK------vLkDdk---TL- 74 (705)
.+|+|+|+... + +.+.+++.. ..||.+|.+.|.+++ +..+.+|+.. |+ +|-|+. .|
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 45999999884 2 366788873 369999999998876 2223333322 32 222222 22
Q ss_pred -ccccccCCCEEEEeeecCCC
Q 005263 75 -SAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 75 -sDYGIedGSTIhLVlRl~gg 94 (705)
.+|.|++|+.|.++-...++
T Consensus 88 gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCC
Confidence 46889999999998777665
No 215
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=83.75 E-value=2.8 Score=48.00 Aligned_cols=77 Identities=22% Similarity=0.271 Sum_probs=52.9
Q ss_pred CCcEEEEEEeCCC------cEEEEEecCCCCHHHHHHHHHHHh--CCCC------CCeEEEeC----Ce-ecCCC-----
Q 005263 16 ETTIEIKIKTLDS------QTYTLRVDKQVPVPALKEQIASVT--GVLS------EQQRLICR----GK-VLKDD----- 71 (705)
Q Consensus 16 ~~tMqI~VKtL~G------KT~tLeVdpsdTV~eLKekIaekt--GIPp------eqQRLIF~----GK-vLkDd----- 71 (705)
-.+|.|+|-..++ ..+.+.|-..+||.++|+||-+.. |+|. ++..|-+. |+ .|.|.
T Consensus 255 ~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred ceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccce
Confidence 4567788765432 457888999999999999997542 4443 45566552 33 35542
Q ss_pred --------cccccccccCCCEEEEeeecC
Q 005263 72 --------QLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 72 --------kTLsDYGIedGSTIhLVlRl~ 92 (705)
.||.+|+|.||.+|-|+.+..
T Consensus 335 ~~~~wkrLNTL~HY~V~dga~v~L~p~~~ 363 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGATVALVPCLT 363 (644)
T ss_dssp EETTEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred ecCcceeecchhhcCCCCCcEEEEEeccc
Confidence 389999999999999987753
No 216
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=83.20 E-value=0.04 Score=46.63 Aligned_cols=36 Identities=6% Similarity=0.028 Sum_probs=30.0
Q ss_pred CCCCCcccc-ccccccccccccccc-CCCCCchhHHHHH
Q 005263 105 GTSRSHGSH-VAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (705)
Q Consensus 105 ~tGrtiTl~-V~pSdTIe~LKvkIq-keGIPpdqQRLIf 141 (705)
.+|+.+ +. +.+++||.+||..|+ +.|||+++|+|+|
T Consensus 8 ~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~ 45 (86)
T 2kzr_A 8 KGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILV 45 (86)
T ss_dssp TTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEE
T ss_pred CCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEe
Confidence 445433 55 899999999999999 8999999999975
No 217
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=82.24 E-value=4.7 Score=34.23 Aligned_cols=73 Identities=5% Similarity=0.049 Sum_probs=47.0
Q ss_pred EEEEEEeCC------CcEEEEEecCCCCHHHHHHHHHHHhC-----C-C-------CCCeEEEeCCeecCCCcccccccc
Q 005263 19 IEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVTG-----V-L-------SEQQRLICRGKVLKDDQLLSAYHV 79 (705)
Q Consensus 19 MqI~VKtL~------GKT~tLeVdpsdTV~eLKekIaektG-----I-P-------peqQRLIF~GKvLkDdkTLsDYGI 79 (705)
|+|+|+... |+...+++ ...||.+|++.+.+++. + . ....++..+|+...+..- .++-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 677777762 33334665 45799999999988753 0 1 113567778887754322 25678
Q ss_pred cCCCEEEEeeecCC
Q 005263 80 EDGHTLHMVVRQPV 93 (705)
Q Consensus 80 edGSTIhLVlRl~g 93 (705)
++|+.|.++-...+
T Consensus 79 ~~gDeV~i~Ppv~G 92 (93)
T 3dwg_C 79 ADGDSVTILPAVAG 92 (93)
T ss_dssp CTTCEEEEEECCTT
T ss_pred CCCCEEEEECCCCC
Confidence 99999998865443
No 218
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=81.53 E-value=0.074 Score=55.95 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=32.6
Q ss_pred CCCCccccccccccccccccccc-CCCCCchhHHHH
Q 005263 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIV 140 (705)
Q Consensus 106 tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLI 140 (705)
.|+.++++|.+++||.+||.+|+ ++|||+++|+||
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi 48 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLL 48 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEET
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEe
Confidence 46678899999999999999999 999999999999
No 219
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=80.52 E-value=5.2 Score=40.18 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=53.8
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEe---CCe--ecCCCcccccccccCCCEEEEeee
Q 005263 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLIC---RGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 18 tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeq-QRLIF---~GK--vLkDdkTLsDYGIedGSTIhLVlR 90 (705)
+|.|.|..+|| ++.+.|++..|+.+|-++|.++.|+...+ -=|.| +|. .|+.++.|.+.+++.+..+.|..|
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 47899999998 68899999999999999999999987643 24554 332 467788888876655554444444
No 220
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=79.87 E-value=5.3 Score=32.71 Aligned_cols=57 Identities=11% Similarity=0.112 Sum_probs=39.8
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-----CCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 29 QTYTLRVDKQVPVPALKEQIASVTG-----VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 29 KT~tLeVdpsdTV~eLKekIaektG-----IPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
+...++ ....||.+|++.+..+.. +......+..+|+.... ++-|++|+.|.++-..
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv 78 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPV 78 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCC
Confidence 345555 567899999999876531 23344578889988753 5578899999987543
No 221
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=79.51 E-value=3.3 Score=36.37 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=37.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRG 65 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI-F~G 65 (705)
..|+|+|-. ++..|.|.|..+.+..+||.||.++..+ +...|+ |++
T Consensus 11 ~~~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ykd 57 (85)
T 1ip9_A 11 KTTKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLF 57 (85)
T ss_dssp CCEEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCS
T ss_pred CceEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEecC
Confidence 568999877 4679999999999999999999999988 344444 443
No 222
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=79.19 E-value=9.4 Score=33.01 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=44.3
Q ss_pred cEEEEEEeCC-------C-cEEEEEec--CCCCHHHHHHHHHHHhCCCCCC-------------eEEEeCCeecCCCccc
Q 005263 18 TIEIKIKTLD-------S-QTYTLRVD--KQVPVPALKEQIASVTGVLSEQ-------------QRLICRGKVLKDDQLL 74 (705)
Q Consensus 18 tMqI~VKtL~-------G-KT~tLeVd--psdTV~eLKekIaektGIPpeq-------------QRLIF~GKvLkDdkTL 74 (705)
+|+|+||... | +...+++. ...||.+|++.+.+++.-...+ ..+..+|+..+ .+
T Consensus 1 mM~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~ 77 (99)
T 2qjl_A 1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LE 77 (99)
T ss_dssp CEEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GG
T ss_pred CcEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---cc
Confidence 3788888763 2 45667776 6789999999998876311110 11233333211 12
Q ss_pred --ccccccCCCEEEEeeecC
Q 005263 75 --SAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 75 --sDYGIedGSTIhLVlRl~ 92 (705)
.++-|++|+.|.++-...
T Consensus 78 ~~~d~~L~dgDeVa~~Ppv~ 97 (99)
T 2qjl_A 78 GEKDYILEDGDIISFTSTLH 97 (99)
T ss_dssp TGGGCBCCTTCEEEEEECTT
T ss_pred CCCCcCcCCCCEEEEECCCC
Confidence 367799999998875443
No 223
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=77.91 E-value=5.6 Score=40.50 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=56.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEe--CCe--ecCCCcccccccccCCCEEEEeee
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLIC--RGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeq-QRLIF--~GK--vLkDdkTLsDYGIedGSTIhLVlR 90 (705)
...|.+.|..+|| ++.+.|+.++|+.+|-++|.++.|+...+ --|.| +|. .|+.++.|.+..++.+..+.|..|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 5679999999998 78899999999999999999999987633 24544 443 478888888877655554444443
No 224
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=77.62 E-value=7.9 Score=34.71 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=57.0
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEE--e----CCeecCCCccccc----ccccCC
Q 005263 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLI--C----RGKVLKDDQLLSA----YHVEDG 82 (705)
Q Consensus 14 ~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQ-RLI--F----~GKvLkDdkTLsD----YGIedG 82 (705)
.....+-|+|-..||....|.|++.+|+.++-+++.+|.++..+.- -|+ + --+.|+|...|-+ +.+..+
T Consensus 5 ~~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~ 84 (100)
T 1wgr_A 5 SSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGD 84 (100)
T ss_dssp CCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSC
T ss_pred ccCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCC
Confidence 3445678888889999999999999999999999999998765433 232 1 2367888876654 445556
Q ss_pred CEEEEeeec
Q 005263 83 HTLHMVVRQ 91 (705)
Q Consensus 83 STIhLVlRl 91 (705)
..|++..+.
T Consensus 85 nr~~F~kr~ 93 (100)
T 1wgr_A 85 SRFVFRKNF 93 (100)
T ss_dssp CEEEECSCC
T ss_pred cEEEEecch
Confidence 666665543
No 225
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=76.82 E-value=8.2 Score=44.24 Aligned_cols=77 Identities=21% Similarity=0.342 Sum_probs=53.9
Q ss_pred CCcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEe----CCe-ecCCC--------
Q 005263 16 ETTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLIC----RGK-VLKDD-------- 71 (705)
Q Consensus 16 ~~tMqI~VKtL~---GKT~tLeVdpsdTV~eLKekIaekt--GIP------peqQRLIF----~GK-vLkDd-------- 71 (705)
-.+|.|+|-..+ ...+.+.|-..|||.++|+||-+.. ++| +++..|-+ .|+ .|.|.
T Consensus 231 ~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 231 YKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp CCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred ceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccC
Confidence 456788876554 3568889999999999999997642 343 35566654 233 34441
Q ss_pred -----cccccccccCCCEEEEeeecC
Q 005263 72 -----QLLSAYHVEDGHTLHMVVRQP 92 (705)
Q Consensus 72 -----kTLsDYGIedGSTIhLVlRl~ 92 (705)
.||.+|+|.||.+|-|+.+..
T Consensus 311 ~wkrLNTL~HY~V~Dga~v~L~p~~~ 336 (627)
T 3ig3_A 311 DWKRVNSLAHYQVTDGSLVALVPKQV 336 (627)
T ss_dssp TEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred ceeEecchhhcCCCCCceEEEEeccc
Confidence 378999999999999988763
No 226
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=76.32 E-value=5.6 Score=40.68 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=55.6
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeC---C--eecCCCcccccccccCCCEE
Q 005263 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICR---G--KVLKDDQLLSAYHVEDGHTL 85 (705)
Q Consensus 12 se~~~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeq-QRLIF~---G--KvLkDdkTLsDYGIedGSTI 85 (705)
.++....|.+.|..+||....+.|++..|+.+|-++|.++.|+...+ .=|.|. | ..|+.++.|.+.......++
T Consensus 11 ~~~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l 90 (296)
T 3qij_A 11 RENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNF 90 (296)
T ss_dssp ------CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEE
T ss_pred CCCCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEE
Confidence 45566789999999999999999999999999999999999987543 345543 2 34777788877654444556
Q ss_pred EEeeec
Q 005263 86 HMVVRQ 91 (705)
Q Consensus 86 hLVlRl 91 (705)
++.++.
T Consensus 91 ~frvkf 96 (296)
T 3qij_A 91 TFNVKF 96 (296)
T ss_dssp EEEESS
T ss_pred EEEEEE
Confidence 655554
No 227
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=74.44 E-value=11 Score=39.35 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=56.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeCC---------eecCCCcccccccccCCCEEE
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICRG---------KVLKDDQLLSAYHVEDGHTLH 86 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpe-qQRLIF~G---------KvLkDdkTLsDYGIedGSTIh 86 (705)
..+.+.|..++|....+.|+...|+.+|-++|+++.++... -.-|.+.. +-|+-+++|.+.++....+++
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 44788899999999999999999999999999999998653 34565532 235566777776666666776
Q ss_pred Eeeec
Q 005263 87 MVVRQ 91 (705)
Q Consensus 87 LVlRl 91 (705)
+.++.
T Consensus 164 frvKf 168 (371)
T 3ivf_A 164 LRRKF 168 (371)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 65554
No 228
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=73.37 E-value=6.2 Score=32.09 Aligned_cols=57 Identities=4% Similarity=0.138 Sum_probs=41.0
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe--EEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ--RLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 29 KT~tLeVdpsdTV~eLKekIaektGIPpeqQ--RLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
+...+++....||.+|++.+..++. ..+.. .+..+|+.+.. +.-+++|+.|.++-..
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~ppv 74 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPPV 74 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEECSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEECCC
Confidence 3556677777899999999987642 01233 78889988865 3678899999887543
No 229
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=72.93 E-value=5.8 Score=31.88 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=41.1
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 27 ~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
+|+.+ ++....||.+|.+++ +++.+...+..+|+.+..+ ...++-+++|+.|.++--.
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESC
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeec
Confidence 56654 456678999999876 5667777788899887532 2234568899999887543
No 230
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=72.89 E-value=0.093 Score=45.90 Aligned_cols=41 Identities=2% Similarity=-0.129 Sum_probs=36.2
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHHHHh
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfavL~ 145 (705)
.+|+.+.++|+++++++.||..+. +.|++++++||+|+--.
T Consensus 15 ~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~ 56 (94)
T 2io1_B 15 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 56 (94)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEE
Confidence 567788999999999999999888 99999999999998443
No 231
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=72.75 E-value=11 Score=32.66 Aligned_cols=70 Identities=10% Similarity=0.113 Sum_probs=44.8
Q ss_pred cEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC---------CCe-------EEEeCCeecCCCcc
Q 005263 18 TIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-VLS---------EQQ-------RLICRGKVLKDDQL 73 (705)
Q Consensus 18 tMqI~VKtL~------G-KT~tLeVdpsdTV~eLKekIaektG-IPp---------eqQ-------RLIF~GKvLkDdkT 73 (705)
+|+|+|+... | +.+.++ ..||.+|.+.+..++. +.. ... .+..+|+..+...
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~- 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE- 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence 5899999874 2 344444 6899999999987742 111 012 5667777653221
Q ss_pred cccccccCCCEEEEeeec
Q 005263 74 LSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 74 LsDYGIedGSTIhLVlRl 91 (705)
-.++-+++|+.|.++-..
T Consensus 79 ~~~~~L~~gD~V~i~ppv 96 (99)
T 2l52_A 79 GLETLLKDSDEIGILPPV 96 (99)
T ss_dssp STTSCCCTTEEEEEECCC
T ss_pred CCCCCCCCCCEEEEECCC
Confidence 234568899999887543
No 232
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=72.51 E-value=2.8 Score=38.81 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=30.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC
Q 005263 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR 64 (705)
Q Consensus 31 ~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~ 64 (705)
..+.|..++|+.+||++|++.+|+|+++|||-+-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 4678999999999999999999999999998643
No 233
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=72.48 E-value=12 Score=33.89 Aligned_cols=75 Identities=11% Similarity=0.136 Sum_probs=54.1
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCe--ecCCCcccccccccCCCEEEEeee
Q 005263 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 16 ~~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLI---F~GK--vLkDdkTLsDYGIedGSTIhLVlR 90 (705)
.+.+-..|...+...+++.+..+.|+.+|+..+++|.+...+.+.|+ ++|. +|++++.--.-.+.-...|++..+
T Consensus 7 sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 7 GEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp SSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred CCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 34466777777888888999999999999999999999877778775 5674 345544333333445567777665
No 234
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=72.26 E-value=17 Score=32.79 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=56.5
Q ss_pred cEEEEEEeCCC---cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCe---ecCCCcccccccccCCCEEEEee
Q 005263 18 TIEIKIKTLDS---QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGK---VLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 18 tMqI~VKtL~G---KT~tLeVdpsdTV~eLKekIaektGIPp--eqQRLIF~GK---vLkDdkTLsDYGIedGSTIhLVl 89 (705)
.++|+|..++. ..++++|..+.-|..|.-+|-++..++. .+--|-..-| +|+-..||..|||+.+..+++.-
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 36777777554 5688999999999999999998887654 3444544432 57889999999999999998865
Q ss_pred e
Q 005263 90 R 90 (705)
Q Consensus 90 R 90 (705)
.
T Consensus 99 ~ 99 (102)
T 2kmc_A 99 Q 99 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 235
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=70.99 E-value=9.7 Score=42.97 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=55.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeC---C--eecCCCcccccccccCCCEEEEeee
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICR---G--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeq-QRLIF~---G--KvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
..|.|.|..+|| ++.|.|+.++|+.+|-..|+.+.|+.... .=|.|. | ..|+.++.|.+.+++.+..+.|.++
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 468999999998 68899999999999999999999986543 355553 2 3577788888887766655444444
No 236
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=68.01 E-value=1.8 Score=39.13 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=45.9
Q ss_pred CcEEEEEEeCC------CcEEEEEecC----CCCHHHHHHHHHHHhCCCCCCeEEEe-CC--e------ecCCCccc---
Q 005263 17 TTIEIKIKTLD------SQTYTLRVDK----QVPVPALKEQIASVTGVLSEQQRLIC-RG--K------VLKDDQLL--- 74 (705)
Q Consensus 17 ~tMqI~VKtL~------GKT~tLeVdp----sdTV~eLKekIaektGIPpeqQRLIF-~G--K------vLkDdkTL--- 74 (705)
.+|+|+||... |+...+++.. ..||.+|-+.|.+++ +..+-+|+. +| + +|-|+..+
T Consensus 3 ~~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l 80 (110)
T 2k9x_A 3 NHNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVV 80 (110)
T ss_dssp CSSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHH
T ss_pred CccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeecc
Confidence 34888888874 3555666663 248999888888775 222333432 23 2 33333222
Q ss_pred --ccccccCCCEEEEeeecCC
Q 005263 75 --SAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 75 --sDYGIedGSTIhLVlRl~g 93 (705)
.+|.+++||.|.++-...+
T Consensus 81 ~gldt~L~dgD~V~fistlhg 101 (110)
T 2k9x_A 81 GGMDYVLNDGDTVEFISTLHG 101 (110)
T ss_dssp TSSCCCCCSSCEEEEEECCCC
T ss_pred CCcccCCCCcCEEEEeCCCcc
Confidence 3688999999888765554
No 237
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=65.83 E-value=8.9 Score=31.95 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=43.3
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 27 ~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
+|+.+.+ ...||.+|.+ ..+++++..-+.++|+.+..+ ...++-+++||.|.++--..++
T Consensus 6 NG~~~e~---~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMT----ELDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp TTEEECC---CCSBHHHHHH----HTTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCC
T ss_pred CCEEEEc---CCCcHHHHHH----HcCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCC
Confidence 5675554 5689988876 457888888888999887432 3445678999999998755443
No 238
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.07 E-value=0.24 Score=45.78 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=33.3
Q ss_pred CCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 106 tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+..+++.+.++.+|.+||..+. ..++|+++|||||+
T Consensus 25 ~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~ 62 (118)
T 2daf_A 25 VGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS 62 (118)
T ss_dssp TCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC
Confidence 34567889999999999999998 88999999999998
No 239
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=64.97 E-value=17 Score=37.36 Aligned_cols=58 Identities=17% Similarity=0.317 Sum_probs=43.5
Q ss_pred EEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC-eecCC-Cccccccc
Q 005263 21 IKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-KVLKD-DQLLSAYH 78 (705)
Q Consensus 21 I~VKtL~-GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~G-KvLkD-dkTLsDYG 78 (705)
+.+..+. -....+.+.+..|+.+||++|++.++++++.|.|+|.+ ++.-| .+....|.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 313 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp EEEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred EEEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 3444443 45667889999999999999999999999999999998 44433 34444443
No 240
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=63.01 E-value=11 Score=30.18 Aligned_cols=62 Identities=13% Similarity=0.173 Sum_probs=40.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEee
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
|+|+|+..+|+. +++....|+.+|-+.|....+ ....-...+|+..+-+ +-|++|+.|.++-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 667888778876 456678999999888743221 1112234678766543 5666788887775
No 241
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=62.41 E-value=13 Score=29.57 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=41.2
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 26 L~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
++|+.+.+ ...||.+|.+.+ +++.+...+..+|+.+..+ ...++-+++|+.|.++--.
T Consensus 4 vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V 61 (64)
T 2cu3_A 4 LNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALM 61 (64)
T ss_dssp ETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECC
T ss_pred ECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeec
Confidence 36776654 568999998877 4566667788899887532 2334568999999988643
No 242
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=60.71 E-value=14 Score=31.23 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=46.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEEeCCeecCCCcccccccccCCCEEEEeeecCCC
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIP-peqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl~gg 94 (705)
|+|+| +|+.+.+......||.+|.+.+ +++ ++..-+.++|+.+..+ ...++-|++||.|.++--..++
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 44544 5675544211568999987654 677 7777788999988533 3456678999999998765554
No 243
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=56.82 E-value=14 Score=33.08 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=37.3
Q ss_pred CcEEEEEEeCC-------CcEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CeEEEeCC
Q 005263 17 TTIEIKIKTLD-------SQTYTLRVDKQVPVPALKEQIASVTGVLSE-----QQRLICRG 65 (705)
Q Consensus 17 ~tMqI~VKtL~-------GKT~tLeVdpsdTV~eLKekIaektGIPpe-----qQRLIF~G 65 (705)
..|+|+|..-+ +..+.|-|.++.+..+|..+|.+|.+++.. ..+|-|+.
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 34888888753 567999999999999999999999886522 23565554
No 244
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=56.44 E-value=1.6 Score=37.49 Aligned_cols=37 Identities=8% Similarity=-0.067 Sum_probs=31.7
Q ss_pred CCCCccccccccccccccccccc-CCCCCchhHHHHHH
Q 005263 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (705)
Q Consensus 106 tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfa 142 (705)
.+..+...+..+.||..||.+|+ ..|+|+..|+|.+.
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~ 58 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE 58 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence 44566678899999999999999 89999999998753
No 245
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=54.89 E-value=11 Score=43.24 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=41.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-ecCCCcccccc
Q 005263 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-VLKDDQLLSAY 77 (705)
Q Consensus 27 ~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GK-vLkDdkTLsDY 77 (705)
..+.+.+.+.+++|+.+||..|++.++|+++.|.|++... .++.......|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 3566778999999999999999999999999999998854 45555555555
No 246
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=54.09 E-value=0.43 Score=39.22 Aligned_cols=40 Identities=3% Similarity=-0.119 Sum_probs=34.7
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfavL 144 (705)
.+|+.+.+.|+++++++.|+.... +.|+++.++||+|+.-
T Consensus 9 ~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~ 49 (72)
T 1wm3_A 9 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ 49 (72)
T ss_dssp TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCE
Confidence 567788899999999999998887 8999999999998743
No 247
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=53.54 E-value=39 Score=27.88 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=38.9
Q ss_pred EEecCCCCHHHHHHHHHHHhC------C-----CCCCeEEEeCCeecCCCcccccccccCCCEEEEeeec
Q 005263 33 LRVDKQVPVPALKEQIASVTG------V-----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 33 LeVdpsdTV~eLKekIaektG------I-----PpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
++++...||.+|.+.+..+.. + ......+..+|+.+... .-.++-+++|+.|.++-..
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv 87 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPV 87 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCT
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCC
Confidence 456666899999999987742 1 11345677888876522 1235568999999887543
No 248
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=52.28 E-value=39 Score=31.30 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=52.7
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC------CeEEE---eCCe--ecCCCcccccccccCCCEE
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE------QQRLI---CRGK--VLKDDQLLSAYHVEDGHTL 85 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpe------qQRLI---F~GK--vLkDdkTLsDYGIedGSTI 85 (705)
+.+-..|...+...+++.+..+.|+.+|+..+++|.+...+ .+.|+ +.|. +|+++..--.-.+.-...|
T Consensus 8 Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRL 87 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHL 87 (120)
T ss_dssp CCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEE
T ss_pred CcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceE
Confidence 45778888888777889999999999999999999987654 67764 6774 4555443322234445677
Q ss_pred EEeee
Q 005263 86 HMVVR 90 (705)
Q Consensus 86 hLVlR 90 (705)
++..+
T Consensus 88 fvc~k 92 (120)
T 2dhz_A 88 FACTR 92 (120)
T ss_dssp EEECT
T ss_pred EEeeh
Confidence 77665
No 249
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=51.28 E-value=0.46 Score=39.97 Aligned_cols=40 Identities=5% Similarity=-0.028 Sum_probs=34.4
Q ss_pred CCCC-Cccccccccccccccccccc-CCCCCchhHHHHHHHH
Q 005263 105 GTSR-SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (705)
Q Consensus 105 ~tGr-tiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfavL 144 (705)
.+|+ .+.+.|++++++..|+.... +.|++++++||+|+.-
T Consensus 15 ~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~ 56 (79)
T 3a4r_A 15 KEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGT 56 (79)
T ss_dssp SSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTE
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE
Confidence 5665 68899999999999998877 8999999999998743
No 250
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=51.17 E-value=0.5 Score=41.12 Aligned_cols=41 Identities=2% Similarity=-0.129 Sum_probs=35.7
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHHHHh
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfavL~ 145 (705)
.+|+.+.+.|++++++..|+.... +.|+++.++||+|+.-.
T Consensus 13 ~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~ 54 (91)
T 2io0_B 13 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 54 (91)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEE
Confidence 467788899999999999998887 89999999999997443
No 251
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=49.98 E-value=27 Score=32.69 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeec-----CC--CcccccccccCCCEEEEee
Q 005263 37 KQVPVPALKEQIASVTGVLSEQQRLIC--RGKVL-----KD--DQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 37 psdTV~eLKekIaektGIPpeqQRLIF--~GKvL-----kD--dkTLsDYGIedGSTIhLVl 89 (705)
...|+.+|-+.|..++|+.. ..-++- ..+.| +| +++|.++||++|+.|.++=
T Consensus 18 ~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 18 NKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred cccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 35799999888999999764 444442 23454 22 5899999999999888764
No 252
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=49.76 E-value=26 Score=39.06 Aligned_cols=77 Identities=10% Similarity=0.221 Sum_probs=60.4
Q ss_pred CCCCcEEEEEEeCC--CcEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC----C--eecC-CCcccccc--c
Q 005263 14 SSETTIEIKIKTLD--SQTYT----LRVDKQVPVPALKEQIASVTGVLSEQQRLICR----G--KVLK-DDQLLSAY--H 78 (705)
Q Consensus 14 ~~~~tMqI~VKtL~--GKT~t----LeVdpsdTV~eLKekIaektGIPpeqQRLIF~----G--KvLk-DdkTLsDY--G 78 (705)
.....+-||+|.-| .+++. +-|+.+.+|.+|-..|.++.|+|++.--++|. + ..|+ .+.||.++ .
T Consensus 126 ~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~e 205 (530)
T 2ylm_A 126 DKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDE 205 (530)
T ss_dssp CTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTT
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhc
Confidence 34456999999886 34443 57889999999999999999999987655554 2 3567 57899999 9
Q ss_pred ccCCCEEEEeee
Q 005263 79 VEDGHTLHMVVR 90 (705)
Q Consensus 79 IedGSTIhLVlR 90 (705)
|.+|+.|.+=..
T Consensus 206 L~~GdII~fQ~~ 217 (530)
T 2ylm_A 206 LMDGDIIVFQKD 217 (530)
T ss_dssp CCTTEEEEEEEC
T ss_pred ccCCCEEEEEec
Confidence 999999876654
No 253
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=48.42 E-value=92 Score=28.01 Aligned_cols=69 Identities=12% Similarity=0.182 Sum_probs=42.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC--CeEEE--eCCeecCCCcccccccccCCCEEEEeee
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE--QQRLI--CRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpe--qQRLI--F~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
..=-++|+..+.+. ..-|- -.+..+|+.|..++++++.. ..+|+ ..|..++|+.-+..+ +..|+.+++.
T Consensus 17 ~~kPfkV~~~~~r~-k~GV~-A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL---p~nT~lmvL~ 89 (100)
T 1f2r_I 17 PLKPCLLRRNHSRD-QHGVA-ASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL---PSNTKFVALA 89 (100)
T ss_dssp CCEEEEEEETTEEE-EEEEE-ESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS---CSCCEEEEEC
T ss_pred CCCCEEEeeCCCcc-EEeEE-cCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC---CCCCEEEEEc
Confidence 33345566433333 44442 45899999999999999753 34554 468888877554432 3555555554
No 254
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=47.35 E-value=67 Score=28.11 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=49.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHHh-C--CCC---CCeEEEeCC--eecCCCcccccccccCCCEEEEeee
Q 005263 30 TYTLRVDKQVPVPALKEQIASVT-G--VLS---EQQRLICRG--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 30 T~tLeVdpsdTV~eLKekIaekt-G--IPp---eqQRLIF~G--KvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
..-+.|+..+|+.++-++++... | +.+ .-.|..++| +.|..+.|+++.||++-..|.+...
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 34568999999999999998753 3 322 246888999 8999999999999999999988763
No 255
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=46.36 E-value=40 Score=29.81 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=50.7
Q ss_pred CcEEEEEEeCC-C--cEEEEEecCCCCHHHHHHHHHH--Hh-CCCCCCeEEEeCCeecCCCcccccccccCCCEEEEeee
Q 005263 17 TTIEIKIKTLD-S--QTYTLRVDKQVPVPALKEQIAS--VT-GVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (705)
Q Consensus 17 ~tMqI~VKtL~-G--KT~tLeVdpsdTV~eLKekIae--kt-GIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVlR 90 (705)
++|+|.|...- . +.+.+++....||.++-+..-- ++ .|..+...+..+|+..+ .++-+++||.|.++--
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYRP 85 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECCC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEec
Confidence 56788876543 2 3456788899999998887743 22 45555678888888887 4566889999999865
Q ss_pred cCC
Q 005263 91 QPV 93 (705)
Q Consensus 91 l~g 93 (705)
+..
T Consensus 86 l~~ 88 (97)
T 2hj1_A 86 LLA 88 (97)
T ss_dssp CC-
T ss_pred ccC
Confidence 443
No 256
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=46.14 E-value=8.3 Score=31.99 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=35.9
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCCcccccccccCCCEEEEee
Q 005263 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 33 LeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvLkDdkTLsDYGIedGSTIhLVl 89 (705)
+++....||.+|.+.+ +++.+...+..+|+.+..+ +-|++|+.|.++-
T Consensus 25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 4556678999988765 4666667788999988654 5688888887764
No 257
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=44.67 E-value=60 Score=28.47 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=31.7
Q ss_pred CcEEEEEEeCCCcEE-EEEec-CCCCHHHHHHHHHHHhCCCCCCeE
Q 005263 17 TTIEIKIKTLDSQTY-TLRVD-KQVPVPALKEQIASVTGVLSEQQR 60 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~-tLeVd-psdTV~eLKekIaektGIPpeqQR 60 (705)
.+..|+-|....+.+ .+.++ ...+|.+||++|.++.++-..+.-
T Consensus 5 ~mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfD 50 (86)
T 2c7h_A 5 SMSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCD 50 (86)
T ss_dssp TBEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEE
T ss_pred ceeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCccc
Confidence 345677777766544 47777 578999999999988877544443
No 258
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=44.01 E-value=15 Score=41.05 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=29.6
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q 005263 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLI 62 (705)
Q Consensus 31 ~tLeVdpsdTV~eLKekIaektGIPpeqQRLI 62 (705)
..++|..++|+.+||++|++.+|+++++|||-
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 35789999999999999999999999999985
No 259
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=42.20 E-value=1.1 Score=40.40 Aligned_cols=40 Identities=3% Similarity=-0.051 Sum_probs=34.9
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHHHH
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfavL 144 (705)
.+|+.+.+.|.+++++..|+.... +.|++++++||+|+.-
T Consensus 34 ~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~ 74 (110)
T 2k8h_A 34 ADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGT 74 (110)
T ss_dssp TTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSC
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE
Confidence 566778899999999999998887 8999999999998743
No 260
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=41.48 E-value=1.2 Score=38.69 Aligned_cols=41 Identities=2% Similarity=-0.129 Sum_probs=35.2
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHHHHh
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfavL~ 145 (705)
.+|+.+.+.|.+++++..|+.... +.|++++++||+|+.-.
T Consensus 25 ~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~ 66 (93)
T 2d07_B 25 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 66 (93)
T ss_dssp TTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred CCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEE
Confidence 456678899999999999999887 89999999999998544
No 261
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=41.28 E-value=0.76 Score=41.02 Aligned_cols=41 Identities=2% Similarity=-0.129 Sum_probs=35.4
Q ss_pred CCCCCccccccccccccccccccc-CCCCCchhHHHHHHHHh
Q 005263 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (705)
Q Consensus 105 ~tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfavL~ 145 (705)
.+|+.+.+.|++++++..|+.... +.|+++.++||+|+.-.
T Consensus 32 ~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~ 73 (104)
T 1wz0_A 32 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 73 (104)
T ss_dssp SSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSB
T ss_pred CCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEE
Confidence 466778899999999999999887 89999999999997443
No 262
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=41.15 E-value=1.5e+02 Score=26.01 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=54.2
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHh-C--CCC--CCeEEEeCCee--cCCCcccccccccCCCEEEEee
Q 005263 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVT-G--VLS--EQQRLICRGKV--LKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 19 MqI~VKtL~GK-T~tLeVdpsdTV~eLKekIaekt-G--IPp--eqQRLIF~GKv--LkDdkTLsDYGIedGSTIhLVl 89 (705)
+-|..+....- ..-+.|+..+|+.++-+|++... | +.+ .-.|..++|+. |.++.|+++.||++-+.|.++.
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 34445554332 34578999999999999998754 3 222 36788999987 9999999999999999998875
No 263
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=40.69 E-value=45 Score=36.76 Aligned_cols=60 Identities=5% Similarity=0.108 Sum_probs=46.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCC----eecCCCccccc
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRG----KVLKDDQLLSA 76 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPp--eqQRLIF~G----KvLkDdkTLsD 76 (705)
..|.+.|..+||....+.|+...|+.+|-+.|.++.|+.. +-.-|.+.. +.|++++.+.|
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 4689999999999999999999999999999999999974 233455432 23555554443
No 264
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=40.10 E-value=28 Score=30.94 Aligned_cols=59 Identities=8% Similarity=0.202 Sum_probs=41.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCC-----------CeEEEeCC-eecC------CCcccccccccCCCEEEEe
Q 005263 30 TYTLRVDKQVPVPALKEQIASVTGVLSE-----------QQRLICRG-KVLK------DDQLLSAYHVEDGHTLHMV 88 (705)
Q Consensus 30 T~tLeVdpsdTV~eLKekIaektGIPpe-----------qQRLIF~G-KvLk------DdkTLsDYGIedGSTIhLV 88 (705)
...++|+++.|+.+|-+.|.+.-.+-.. ...|++.. ..|+ -+++|.++|+.+|+.|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4568999999999999999885332211 33444444 2343 2578999999999999884
No 265
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=35.22 E-value=14 Score=33.95 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=52.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC--CeEEEeCC---eecCCCcccccccccCCCEEEEee
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE--QQRLICRG---KVLKDDQLLSAYHVEDGHTLHMVV 89 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpe--qQRLIF~G---KvLkDdkTLsDYGIedGSTIhLVl 89 (705)
++|+|..++ ...+++|..+.-|..|.-+|-++..++.+ +--|-..- .+|+-..||..|||+.+..+++.-
T Consensus 27 L~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 27 LSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp EECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred EEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 556665554 77889999999999999999988776542 33333322 257888999999999998887754
No 266
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.92 E-value=66 Score=28.44 Aligned_cols=66 Identities=12% Similarity=0.240 Sum_probs=42.9
Q ss_pred EEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCCCcccccccccCCCEEEEeeec
Q 005263 20 EIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (705)
Q Consensus 20 qI~VKtL~-GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF--~GKvLkDdkTLsDYGIedGSTIhLVlRl 91 (705)
-++|+..+ .+.+-|-+ .+..+|+.|..+++.++...-+|+. +|..++|+.-+..+ +..|+.|++..
T Consensus 11 pfkV~~~~Rs~k~GV~A---~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 11 PFRVSNHDRSSRRGVMA---SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp EEEEECTTSCCCEEEEE---SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CEEEecCCCCeEEeEEc---CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 34455543 23333433 5799999999999999866667664 58888777544432 46677777653
No 267
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=30.83 E-value=2e+02 Score=25.11 Aligned_cols=73 Identities=8% Similarity=0.076 Sum_probs=47.9
Q ss_pred CCcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec-CCCcccccc--cccCCCEEEEe
Q 005263 16 ETTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL-KDDQLLSAY--HVEDGHTLHMV 88 (705)
Q Consensus 16 ~~tMqI~VKtL~G----KT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~GKvL-kDdkTLsDY--GIedGSTIhLV 88 (705)
...+.|.+|.... +.-.+.|..+.|+.+|...|.++.++ +..-|+.+...+ ..+.++.+. .-+++..|+|.
T Consensus 6 ~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~ 83 (91)
T 3w1s_C 6 IQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVS 83 (91)
T ss_dssp CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEE
T ss_pred CCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEE
Confidence 3457777776532 23456789999999999999999998 566777777644 445565542 11246677776
Q ss_pred ee
Q 005263 89 VR 90 (705)
Q Consensus 89 lR 90 (705)
..
T Consensus 84 Ys 85 (91)
T 3w1s_C 84 YC 85 (91)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 268
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=30.79 E-value=86 Score=32.44 Aligned_cols=72 Identities=13% Similarity=0.213 Sum_probs=50.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-------CeecCCCcccccc----cccCCCEE
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-------GKVLKDDQLLSAY----HVEDGHTL 85 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~-------GKvLkDdkTLsDY----GIedGSTI 85 (705)
..+-|+|-..+|....|+|++++|+.+|-+.+..+.++....-..+|. -+.|+|...|.+. .......|
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l 109 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKL 109 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEE
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceE
Confidence 456678878889999999999999999999999988765443322221 2677887766553 34444555
Q ss_pred EEe
Q 005263 86 HMV 88 (705)
Q Consensus 86 hLV 88 (705)
.+.
T Consensus 110 ~f~ 112 (281)
T 4gmv_A 110 IFM 112 (281)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 269
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=29.53 E-value=1.9 Score=38.71 Aligned_cols=40 Identities=5% Similarity=-0.074 Sum_probs=34.9
Q ss_pred CCCCccccccccccccccccccc-CCCCCchhHHHHHHHHh
Q 005263 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (705)
Q Consensus 106 tGrtiTl~V~pSdTIe~LKvkIq-keGIPpdqQRLIfavL~ 145 (705)
+|+.+.+.|++++++..|+.... +.|+++.++||+|+.-.
T Consensus 39 ~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~r 79 (106)
T 2eke_C 39 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIR 79 (106)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeE
Confidence 56778899999999999998887 89999999999997544
No 270
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=25.86 E-value=1.2e+02 Score=26.76 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=35.1
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeCCee
Q 005263 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICRGKV 67 (705)
Q Consensus 28 GKT~tLeVdpsdTV~eLKekIaektGIPpeqQ-RLIF~GKv 67 (705)
..+|.+.|++..+=.++|+.|++.+++.+..- -|+..||.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 36899999999999999999999999999877 46777764
No 271
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=25.29 E-value=87 Score=35.86 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=36.9
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS 56 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPp 56 (705)
..|.+.|..++|..+.+.|+..+|+.+|-++|.++.|+..
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e 301 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKD 301 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSS
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcc
Confidence 4689999999999999999999999999999999998653
No 272
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=25.17 E-value=2e+02 Score=25.24 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=51.8
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCCCcccccccccCCCEEEEeeecCC
Q 005263 32 TLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (705)
Q Consensus 32 tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~-GKvLkDdkTLsDYGIedGSTIhLVlRl~g 93 (705)
.+.|........+-+-.++++++|+..--+|.+ |--+...++-...-++.|+.|.|+-|-+.
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRV 89 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRV 89 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSS
T ss_pred EEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccc
Confidence 468888888888888999999999988877765 55577788888888999999999987654
No 273
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=23.61 E-value=1.4e+02 Score=29.15 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=42.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEE--eC----CeecCCCccc
Q 005263 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLI--CR----GKVLKDDQLL 74 (705)
Q Consensus 17 ~tMqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQ-RLI--F~----GKvLkDdkTL 74 (705)
..+.|.|-..++....+.|++.+|+.+|-+.|.++.++..+.. .|+ +. -+.|+|...+
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~E~~~~~~ler~l~d~E~v 97 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYPELQIERVFEDHENV 97 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEEEEETTTTEEEECCTTSBH
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEEEeccccccceecccchhH
Confidence 4466777777899999999999999999999999999876433 332 11 1466666543
No 274
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=22.15 E-value=1.7e+02 Score=25.39 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=48.4
Q ss_pred CcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeCCeec-CCCccccc----ccccCCCEEE
Q 005263 17 TTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICRGKVL-KDDQLLSA----YHVEDGHTLH 86 (705)
Q Consensus 17 ~tMqI~VKtL~G----KT~tLeVdpsdTV~eLKekIaektGIPpeqQ-RLIF~GKvL-kDdkTLsD----YGIedGSTIh 86 (705)
..+.|.+|.... +.-.+-|..+.||.+|...|.++.++.+++- -|+.+...+ ..+.++.+ |+ .+..|+
T Consensus 4 ~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k--~DGfLy 81 (91)
T 4gdk_A 4 KKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG--SDGKLV 81 (91)
T ss_dssp CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC--BTTEEE
T ss_pred ceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC--CCCEEE
Confidence 346666666421 3345678899999999999999999987754 555566554 44556543 44 456666
Q ss_pred Eeee
Q 005263 87 MVVR 90 (705)
Q Consensus 87 LVlR 90 (705)
|...
T Consensus 82 v~Ys 85 (91)
T 4gdk_A 82 LHYC 85 (91)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
No 275
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=22.11 E-value=95 Score=31.66 Aligned_cols=58 Identities=10% Similarity=0.214 Sum_probs=39.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-------CeecCCCccccc
Q 005263 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-------GKVLKDDQLLSA 76 (705)
Q Consensus 19 MqI~VKtL~GKT~tLeVdpsdTV~eLKekIaektGIPpeqQRLIF~-------GKvLkDdkTLsD 76 (705)
.-|+|-..++....|.|++++|+.+|-..+..+..+..+.-..+|. -|.|+|...+-+
T Consensus 9 ~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~e 73 (256)
T 3hk0_A 9 QDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQ 73 (256)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHH
T ss_pred eEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHH
Confidence 4566667789999999999999999999999887765443333322 267788766554
No 276
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=20.02 E-value=75 Score=27.06 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=29.7
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCC-----CCCeEEEeCC
Q 005263 29 QTYTLRVDKQVPVPALKEQIASVTGVL-----SEQQRLICRG 65 (705)
Q Consensus 29 KT~tLeVdpsdTV~eLKekIaektGIP-----peqQRLIF~G 65 (705)
..+.|.|.++.+..+|..+|.+|+++. ....+|-|+.
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 367899999999999999999999865 3445666654
Done!