BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005265
         (705 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
           Arthrobacter Globiformis In Complex With Acetate
 pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
           Arthrobacter Globiformis In Complex With Folic Acid
 pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
           Globiformis In Complex With Folinic Acid
          Length = 830

 Score = 31.2 bits (69), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 88  WNSIITGLLKWGFIDDASRLFASMP-ERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSEN 146
           W+++      +G I      F+S+  E+   SW + ++   +HD F   LG+ VKM  E+
Sbjct: 670 WDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMT--TEHDPFEAGLGFAVKMAKES 727

Query: 147 F 147
           F
Sbjct: 728 F 728


>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant
           Of Arthrobacter Globiformis In Complex With
           Tetrahydrofolate
          Length = 827

 Score = 31.2 bits (69), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 88  WNSIITGLLKWGFIDDASRLFASMP-ERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSEN 146
           W+++      +G I      F+S+  E+   SW + ++   +HD F   LG+ VKM  E+
Sbjct: 667 WDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMT--TEHDPFEAGLGFAVKMAKES 724

Query: 147 F 147
           F
Sbjct: 725 F 725


>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 30.8 bits (68), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 489 KPDHVT-MIGVLCACSHAGLVEEG-RKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDE 546
           KPD +   I +  A   AG +E   + Y S++     L  ++     ++  LGR   L+E
Sbjct: 97  KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR---LEE 153

Query: 547 AKT-LIEAMPMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMY 604
           AK   ++A+  QP+ AV W +L         I L  +  +K + ++P+    Y+ L N+ 
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213

Query: 605 AE 606
            E
Sbjct: 214 KE 215


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,416,840
Number of Sequences: 62578
Number of extensions: 739816
Number of successful extensions: 1395
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1392
Number of HSP's gapped (non-prelim): 18
length of query: 705
length of database: 14,973,337
effective HSP length: 106
effective length of query: 599
effective length of database: 8,340,069
effective search space: 4995701331
effective search space used: 4995701331
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)