Query 005265
Match_columns 705
No_of_seqs 723 out of 4172
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 20:43:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4E-100 8E-105 860.3 78.5 671 15-695 47-793 (857)
2 PLN03081 pentatricopeptide (PP 100.0 6.7E-85 1.5E-89 718.7 63.6 545 113-695 84-631 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.2E-75 4.8E-80 658.8 61.5 558 16-589 149-720 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.1E-67 2.4E-72 582.5 57.6 523 15-561 366-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.8E-66 6E-71 571.5 61.8 508 83-630 368-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.2E-66 6.9E-71 570.5 54.4 472 15-527 83-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-34 3.6E-39 335.1 68.5 580 27-625 269-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6E-34 1.3E-38 330.4 69.1 588 17-623 225-832 (899)
9 PRK11447 cellulose synthase su 100.0 3.9E-25 8.5E-30 256.3 64.9 583 18-622 61-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1E-24 2.2E-29 252.9 61.3 585 22-624 31-701 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.1E-22 2.4E-27 224.7 58.6 564 31-622 56-739 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 1.5E-21 3.2E-26 190.9 33.5 377 217-612 116-508 (966)
13 PRK09782 bacteriophage N4 rece 99.9 3.3E-19 7.2E-24 197.3 56.5 563 19-610 78-760 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 2.8E-20 6E-25 182.0 31.8 419 189-624 51-486 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-18 2.8E-23 189.8 42.8 417 189-623 130-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 7.2E-19 1.6E-23 182.3 30.3 267 351-630 70-354 (389)
17 KOG2002 TPR-containing nuclear 99.8 1.3E-16 2.9E-21 165.1 44.4 539 70-623 146-745 (1018)
18 KOG2002 TPR-containing nuclear 99.8 2.6E-16 5.7E-21 162.9 46.2 552 32-625 177-800 (1018)
19 PRK11788 tetratricopeptide rep 99.8 4.6E-18 1E-22 176.2 30.7 299 126-493 45-354 (389)
20 TIGR00990 3a0801s09 mitochondr 99.8 3.1E-16 6.6E-21 171.2 44.4 249 332-594 307-576 (615)
21 PRK15174 Vi polysaccharide exp 99.8 2.2E-16 4.9E-21 171.5 41.3 369 198-622 17-402 (656)
22 PRK10049 pgaA outer membrane p 99.8 1.4E-15 3E-20 169.0 47.0 408 150-595 14-462 (765)
23 PRK10049 pgaA outer membrane p 99.8 7.5E-16 1.6E-20 171.2 44.3 396 185-623 14-456 (765)
24 PRK15174 Vi polysaccharide exp 99.8 5.2E-16 1.1E-20 168.6 39.6 323 255-624 45-382 (656)
25 KOG4422 Uncharacterized conser 99.8 7E-15 1.5E-19 138.5 38.9 332 20-416 117-464 (625)
26 PRK14574 hmsH outer membrane p 99.8 2.2E-14 4.8E-19 156.1 45.6 435 127-595 45-519 (822)
27 PRK14574 hmsH outer membrane p 99.8 2.7E-14 5.9E-19 155.4 45.6 192 432-623 298-513 (822)
28 KOG4318 Bicoid mRNA stability 99.8 2.1E-14 4.5E-19 147.2 41.3 246 5-267 11-286 (1088)
29 KOG0495 HAT repeat protein [RN 99.7 5.6E-12 1.2E-16 125.4 52.6 590 17-636 244-891 (913)
30 KOG2076 RNA polymerase III tra 99.7 9.9E-13 2.2E-17 136.0 43.8 539 66-606 151-786 (895)
31 KOG4422 Uncharacterized conser 99.7 1.6E-12 3.6E-17 122.8 40.4 432 116-625 116-592 (625)
32 KOG0495 HAT repeat protein [RN 99.7 2.6E-11 5.6E-16 120.8 49.1 454 127-601 417-892 (913)
33 KOG2076 RNA polymerase III tra 99.7 7.7E-12 1.7E-16 129.6 46.9 582 32-623 152-849 (895)
34 KOG2003 TPR repeat-containing 99.7 5.9E-14 1.3E-18 133.1 29.2 450 123-609 208-709 (840)
35 KOG0547 Translocase of outer m 99.6 6.2E-13 1.4E-17 127.8 31.2 213 397-621 338-564 (606)
36 KOG2003 TPR repeat-containing 99.6 4.6E-14 1E-18 133.8 22.8 479 20-542 163-708 (840)
37 PF13429 TPR_15: Tetratricopep 99.6 4.8E-15 1E-19 145.2 11.4 257 355-622 13-276 (280)
38 KOG1915 Cell cycle control pro 99.6 1.4E-09 3.1E-14 104.6 44.8 542 87-669 75-674 (677)
39 KOG1126 DNA-binding cell divis 99.6 4.9E-13 1.1E-17 134.0 22.5 246 366-621 335-584 (638)
40 KOG1173 Anaphase-promoting com 99.5 1.3E-10 2.9E-15 114.4 35.2 261 349-622 243-517 (611)
41 KOG1155 Anaphase-promoting com 99.5 6.7E-11 1.5E-15 113.4 30.7 328 285-622 161-494 (559)
42 PRK10747 putative protoheme IX 99.5 1.7E-11 3.8E-16 125.6 29.0 274 333-622 98-389 (398)
43 KOG1126 DNA-binding cell divis 99.5 3.2E-12 6.9E-17 128.3 22.3 275 334-623 334-620 (638)
44 KOG4318 Bicoid mRNA stability 99.5 3.8E-10 8.3E-15 116.6 37.1 531 40-634 11-604 (1088)
45 KOG2047 mRNA splicing factor [ 99.5 9.9E-09 2.1E-13 102.7 45.0 284 320-613 388-713 (835)
46 KOG1915 Cell cycle control pro 99.5 4.1E-09 9E-14 101.5 40.7 459 119-621 76-583 (677)
47 KOG1155 Anaphase-promoting com 99.5 3.6E-10 7.7E-15 108.6 33.2 356 181-551 159-530 (559)
48 TIGR00540 hemY_coli hemY prote 99.5 3E-10 6.5E-15 117.3 34.7 145 443-589 246-399 (409)
49 PRK10747 putative protoheme IX 99.5 9.3E-11 2E-15 120.3 30.7 287 230-589 97-390 (398)
50 KOG1173 Anaphase-promoting com 99.4 1.3E-09 2.9E-14 107.5 34.5 503 18-572 15-534 (611)
51 KOG2047 mRNA splicing factor [ 99.4 7E-08 1.5E-12 96.8 44.7 506 55-576 103-710 (835)
52 TIGR00540 hemY_coli hemY prote 99.4 3.6E-10 7.8E-15 116.7 29.9 278 332-622 97-398 (409)
53 PF13429 TPR_15: Tetratricopep 99.4 2.5E-12 5.5E-17 125.9 13.2 259 121-412 13-275 (280)
54 KOG0547 Translocase of outer m 99.4 2.2E-09 4.8E-14 103.9 32.3 217 360-589 336-566 (606)
55 COG2956 Predicted N-acetylgluc 99.4 1.5E-09 3.2E-14 99.6 28.4 217 230-485 48-277 (389)
56 COG3071 HemY Uncharacterized e 99.4 3.2E-09 7E-14 100.7 31.6 290 230-589 97-390 (400)
57 TIGR02521 type_IV_pilW type IV 99.3 5.4E-10 1.2E-14 106.8 23.8 198 424-622 29-231 (234)
58 KOG1840 Kinesin light chain [C 99.3 7.2E-10 1.6E-14 112.9 24.5 236 386-621 200-477 (508)
59 KOG3785 Uncharacterized conser 99.3 2.2E-08 4.7E-13 93.0 30.9 470 95-630 32-521 (557)
60 COG3071 HemY Uncharacterized e 99.3 4.1E-09 8.8E-14 100.0 26.8 276 333-622 98-389 (400)
61 COG2956 Predicted N-acetylgluc 99.3 3.6E-09 7.8E-14 97.2 25.1 222 395-629 117-353 (389)
62 KOG4162 Predicted calmodulin-b 99.3 1.1E-07 2.5E-12 97.6 38.2 459 128-623 239-783 (799)
63 KOG1174 Anaphase-promoting com 99.3 5.5E-08 1.2E-12 92.4 33.2 265 318-594 231-505 (564)
64 KOG2376 Signal recognition par 99.3 2.8E-07 6E-12 92.0 39.5 441 123-620 19-517 (652)
65 KOG0985 Vesicle coat protein c 99.2 4.3E-06 9.3E-11 88.4 47.0 500 88-621 609-1247(1666)
66 PF13041 PPR_2: PPR repeat fam 99.2 2.4E-11 5.2E-16 82.8 6.1 50 215-264 1-50 (50)
67 PRK12370 invasion protein regu 99.2 4.5E-09 9.7E-14 112.9 26.7 241 365-624 276-536 (553)
68 PF13041 PPR_2: PPR repeat fam 99.2 2.8E-11 6.1E-16 82.5 6.0 50 114-163 1-50 (50)
69 KOG1174 Anaphase-promoting com 99.2 2.7E-07 5.9E-12 87.8 34.0 279 347-668 229-519 (564)
70 KOG0985 Vesicle coat protein c 99.2 1.3E-06 2.9E-11 92.0 41.7 526 34-606 658-1325(1666)
71 KOG3616 Selective LIM binding 99.2 1.2E-06 2.6E-11 89.3 39.6 448 100-622 546-1023(1636)
72 KOG1129 TPR repeat-containing 99.2 1.6E-09 3.5E-14 99.3 16.9 222 390-623 228-458 (478)
73 KOG3616 Selective LIM binding 99.2 8.8E-06 1.9E-10 83.2 44.5 67 533-599 1297-1365(1636)
74 PRK12370 invasion protein regu 99.2 5E-09 1.1E-13 112.5 23.3 211 399-623 275-502 (553)
75 KOG4162 Predicted calmodulin-b 99.2 1.4E-06 3E-11 89.9 38.9 133 458-595 651-789 (799)
76 COG3063 PilF Tfp pilus assembl 99.2 3.9E-09 8.4E-14 92.6 17.5 162 459-625 37-204 (250)
77 KOG3785 Uncharacterized conser 99.1 1.4E-06 2.9E-11 81.4 34.4 213 400-626 269-493 (557)
78 KOG2376 Signal recognition par 99.1 7.7E-07 1.7E-11 88.9 34.5 439 25-515 18-514 (652)
79 TIGR02521 type_IV_pilW type IV 99.1 2.6E-08 5.7E-13 95.0 24.4 162 426-590 65-233 (234)
80 KOG1156 N-terminal acetyltrans 99.1 1.3E-05 2.8E-10 81.3 43.2 583 22-623 11-688 (700)
81 KOG1129 TPR repeat-containing 99.1 2.6E-09 5.5E-14 98.0 15.0 235 354-599 227-468 (478)
82 KOG1840 Kinesin light chain [C 99.1 8E-08 1.7E-12 98.2 27.0 95 494-588 369-478 (508)
83 KOG1156 N-terminal acetyltrans 99.1 2.3E-06 5E-11 86.5 36.3 226 163-395 19-262 (700)
84 PRK11189 lipoprotein NlpI; Pro 99.1 1.7E-08 3.7E-13 99.0 21.0 213 400-624 41-266 (296)
85 KOG1127 TPR repeat-containing 99.1 3.3E-06 7.3E-11 89.3 37.6 294 319-622 775-1103(1238)
86 PF12569 NARP1: NMDA receptor- 99.0 3.1E-06 6.7E-11 87.9 36.5 255 352-619 196-516 (517)
87 PRK11189 lipoprotein NlpI; Pro 99.0 1.9E-07 4.2E-12 91.6 25.9 216 364-593 40-269 (296)
88 KOG0624 dsRNA-activated protei 99.0 1.3E-06 2.8E-11 81.2 27.8 298 293-622 43-369 (504)
89 KOG0548 Molecular co-chaperone 99.0 2.5E-06 5.4E-11 84.6 31.4 216 388-623 227-455 (539)
90 KOG1127 TPR repeat-containing 99.0 3.3E-06 7.2E-11 89.3 33.8 307 305-620 800-1135(1238)
91 KOG1125 TPR repeat-containing 99.0 2.3E-08 5.1E-13 99.4 17.4 219 396-623 296-527 (579)
92 COG3063 PilF Tfp pilus assembl 98.9 6.7E-07 1.5E-11 78.8 21.4 194 392-595 42-242 (250)
93 KOG3617 WD40 and TPR repeat-co 98.9 0.00022 4.7E-09 74.4 40.3 247 349-624 1079-1360(1416)
94 PF12569 NARP1: NMDA receptor- 98.8 5E-06 1.1E-10 86.4 27.9 126 494-622 196-333 (517)
95 KOG4340 Uncharacterized conser 98.8 1.9E-05 4.1E-10 72.2 27.8 401 188-622 12-442 (459)
96 KOG3617 WD40 and TPR repeat-co 98.8 1.2E-05 2.7E-10 83.2 29.4 235 184-452 724-993 (1416)
97 PF04733 Coatomer_E: Coatomer 98.8 3E-07 6.4E-12 88.8 17.2 145 469-622 114-264 (290)
98 PF04733 Coatomer_E: Coatomer 98.7 7.3E-07 1.6E-11 86.1 18.1 227 353-595 38-271 (290)
99 KOG4340 Uncharacterized conser 98.7 2.3E-05 5E-10 71.7 25.8 238 198-451 124-371 (459)
100 KOG0548 Molecular co-chaperone 98.7 3E-05 6.6E-10 77.1 28.7 245 353-618 227-484 (539)
101 TIGR03302 OM_YfiO outer membra 98.7 1.3E-06 2.8E-11 83.3 19.1 181 423-623 30-232 (235)
102 KOG1914 mRNA cleavage and poly 98.7 0.00043 9.3E-09 69.1 35.9 175 366-546 347-528 (656)
103 KOG1070 rRNA processing protei 98.7 1.7E-06 3.6E-11 94.6 21.2 201 423-627 1455-1667(1710)
104 cd05804 StaR_like StaR_like; a 98.7 5.5E-05 1.2E-09 77.4 31.8 257 358-624 51-337 (355)
105 KOG0624 dsRNA-activated protei 98.7 7.9E-05 1.7E-09 69.7 27.7 324 219-595 40-376 (504)
106 PRK04841 transcriptional regul 98.7 8.5E-05 1.9E-09 86.4 35.4 85 538-622 663-759 (903)
107 PRK15359 type III secretion sy 98.6 7.4E-07 1.6E-11 76.7 13.5 121 478-605 14-137 (144)
108 PRK10370 formate-dependent nit 98.6 3.1E-06 6.8E-11 77.1 18.1 147 464-624 23-174 (198)
109 KOG2053 Mitochondrial inherita 98.6 0.0019 4.1E-08 68.7 38.3 159 388-557 439-608 (932)
110 PF12854 PPR_1: PPR repeat 98.6 7.6E-08 1.6E-12 58.6 3.7 34 180-213 1-34 (34)
111 PRK15179 Vi polysaccharide bio 98.5 5.9E-06 1.3E-10 89.3 20.0 133 456-593 85-221 (694)
112 PRK15363 pathogenicity island 98.5 2.8E-06 6E-11 71.6 13.3 95 528-622 35-131 (157)
113 PRK15359 type III secretion sy 98.5 4.3E-06 9.3E-11 72.0 15.1 106 513-623 14-121 (144)
114 cd05804 StaR_like StaR_like; a 98.5 0.00024 5.2E-09 72.6 30.4 265 351-624 7-294 (355)
115 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.7E-12 57.0 3.6 32 49-80 2-33 (34)
116 KOG1125 TPR repeat-containing 98.5 1.1E-05 2.5E-10 80.7 18.0 244 360-614 295-562 (579)
117 TIGR03302 OM_YfiO outer membra 98.5 1.7E-05 3.7E-10 75.6 18.7 145 427-592 71-235 (235)
118 PRK04841 transcriptional regul 98.4 0.00044 9.6E-09 80.5 33.9 323 196-521 384-760 (903)
119 KOG1070 rRNA processing protei 98.4 3.2E-05 7E-10 85.0 21.9 219 285-509 1455-1688(1710)
120 KOG1128 Uncharacterized conser 98.4 9.2E-06 2E-10 83.5 16.4 212 389-625 402-618 (777)
121 COG5010 TadD Flp pilus assembl 98.4 2.2E-05 4.8E-10 71.1 16.6 133 489-623 63-197 (257)
122 PRK10370 formate-dependent nit 98.4 3.2E-05 7E-10 70.5 17.9 153 432-597 22-181 (198)
123 PLN02789 farnesyltranstransfer 98.4 0.00012 2.6E-09 71.8 22.8 210 400-620 52-299 (320)
124 COG5010 TadD Flp pilus assembl 98.4 4.9E-05 1.1E-09 68.9 17.7 159 456-619 66-227 (257)
125 KOG2053 Mitochondrial inherita 98.4 0.0069 1.5E-07 64.6 39.3 159 459-621 438-606 (932)
126 TIGR02552 LcrH_SycD type III s 98.3 1.2E-05 2.7E-10 68.9 12.3 100 524-623 12-114 (135)
127 PRK15179 Vi polysaccharide bio 98.3 0.00012 2.7E-09 79.3 22.5 140 423-567 83-229 (694)
128 KOG1128 Uncharacterized conser 98.3 5E-05 1.1E-09 78.4 17.3 187 423-624 395-583 (777)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.7E-05 5.8E-10 77.8 14.1 122 495-621 172-295 (395)
130 PLN02789 farnesyltranstransfer 98.2 0.00025 5.4E-09 69.7 20.6 187 431-622 42-249 (320)
131 COG4783 Putative Zn-dependent 98.2 0.0028 6.2E-08 63.0 27.1 143 459-623 308-454 (484)
132 KOG3081 Vesicle coat complex C 98.2 0.0012 2.7E-08 60.0 22.3 116 502-621 147-269 (299)
133 KOG3060 Uncharacterized conser 98.2 0.00035 7.6E-09 62.9 18.6 167 427-596 53-227 (289)
134 PRK14720 transcript cleavage f 98.1 0.0021 4.5E-08 70.8 27.2 150 386-571 117-268 (906)
135 PRK14720 transcript cleavage f 98.1 0.0007 1.5E-08 74.3 23.4 151 424-605 114-268 (906)
136 COG4783 Putative Zn-dependent 98.1 0.00038 8.3E-09 68.9 19.1 119 501-622 315-436 (484)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00013 2.8E-09 73.1 15.3 127 427-558 170-298 (395)
138 TIGR00756 PPR pentatricopeptid 98.0 7.9E-06 1.7E-10 50.6 4.4 35 458-492 1-35 (35)
139 TIGR00756 PPR pentatricopeptid 98.0 8.2E-06 1.8E-10 50.6 4.4 35 218-252 1-35 (35)
140 KOG3060 Uncharacterized conser 98.0 0.00043 9.3E-09 62.4 16.3 182 439-624 25-221 (289)
141 TIGR02552 LcrH_SycD type III s 98.0 0.00019 4.2E-09 61.3 13.7 113 479-595 5-120 (135)
142 PF09976 TPR_21: Tetratricopep 98.0 0.00025 5.4E-09 61.3 14.0 114 505-619 24-143 (145)
143 PF13812 PPR_3: Pentatricopept 98.0 1.3E-05 2.9E-10 49.2 4.3 34 217-250 1-34 (34)
144 PF13414 TPR_11: TPR repeat; P 98.0 2.8E-05 6E-10 57.3 6.6 64 559-622 2-66 (69)
145 PF13812 PPR_3: Pentatricopept 97.9 1.6E-05 3.4E-10 48.8 4.1 33 117-149 2-34 (34)
146 KOG3081 Vesicle coat complex C 97.9 0.0028 6.1E-08 57.8 19.7 159 430-595 112-277 (299)
147 KOG0550 Molecular chaperone (D 97.9 0.00034 7.3E-09 67.5 14.6 166 458-629 169-356 (486)
148 PF12895 Apc3: Anaphase-promot 97.9 1.4E-05 3E-10 61.6 4.5 78 541-619 2-83 (84)
149 PLN03088 SGT1, suppressor of 97.9 0.00018 3.9E-09 72.4 13.6 84 538-621 12-97 (356)
150 KOG0553 TPR repeat-containing 97.9 7.8E-05 1.7E-09 69.0 9.8 91 502-595 91-184 (304)
151 cd00189 TPR Tetratricopeptide 97.9 0.00014 3E-09 57.6 10.5 92 531-622 3-96 (100)
152 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00022 4.8E-09 59.4 11.5 94 530-623 4-105 (119)
153 PF09976 TPR_21: Tetratricopep 97.9 0.00081 1.8E-08 58.1 15.0 122 461-586 16-144 (145)
154 PRK15331 chaperone protein Sic 97.8 0.00053 1.1E-08 58.3 12.7 100 523-622 31-133 (165)
155 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00042 9.1E-09 57.6 12.2 103 495-597 5-113 (119)
156 PF13432 TPR_16: Tetratricopep 97.7 8.5E-05 1.8E-09 53.9 5.9 58 566-623 3-60 (65)
157 PRK10153 DNA-binding transcrip 97.7 0.0015 3.3E-08 68.8 17.4 139 454-594 334-487 (517)
158 PF14559 TPR_19: Tetratricopep 97.7 9.8E-05 2.1E-09 54.2 6.2 52 571-622 2-53 (68)
159 PRK02603 photosystem I assembl 97.7 0.00044 9.4E-09 61.9 11.6 82 528-609 35-121 (172)
160 KOG0553 TPR repeat-containing 97.7 0.0003 6.4E-09 65.3 10.4 101 464-569 88-191 (304)
161 CHL00033 ycf3 photosystem I as 97.7 0.00039 8.5E-09 62.0 11.1 94 528-621 35-140 (168)
162 PF07079 DUF1347: Protein of u 97.7 0.063 1.4E-06 53.1 31.8 115 503-621 390-522 (549)
163 KOG1130 Predicted G-alpha GTPa 97.7 0.00033 7.1E-09 67.4 10.4 262 358-622 25-343 (639)
164 KOG1914 mRNA cleavage and poly 97.7 0.087 1.9E-06 53.4 38.8 161 457-620 366-536 (656)
165 PF01535 PPR: PPR repeat; Int 97.6 8.4E-05 1.8E-09 44.4 3.6 31 117-147 1-31 (31)
166 PF01535 PPR: PPR repeat; Int 97.6 7.6E-05 1.6E-09 44.6 3.4 31 218-248 1-31 (31)
167 KOG2041 WD40 repeat protein [G 97.6 0.13 2.9E-06 53.6 27.8 140 219-378 798-951 (1189)
168 COG4235 Cytochrome c biogenesi 97.6 0.0028 6E-08 59.5 14.7 101 525-625 152-258 (287)
169 PLN03088 SGT1, suppressor of 97.6 0.00099 2.1E-08 67.2 12.9 104 501-607 11-117 (356)
170 PF14938 SNAP: Soluble NSF att 97.6 0.021 4.6E-07 55.7 21.8 110 352-463 157-274 (282)
171 PF13371 TPR_9: Tetratricopept 97.5 0.00032 6.9E-09 52.3 6.5 58 567-624 2-59 (73)
172 PRK02603 photosystem I assembl 97.5 0.0036 7.9E-08 55.9 14.2 130 456-609 34-166 (172)
173 PF13432 TPR_16: Tetratricopep 97.4 0.00042 9.2E-09 50.1 6.2 61 534-594 3-65 (65)
174 PF05843 Suf: Suppressor of fo 97.4 0.0069 1.5E-07 58.8 16.3 135 458-595 2-142 (280)
175 PF12895 Apc3: Anaphase-promot 97.4 0.00047 1E-08 53.0 6.6 80 470-553 2-83 (84)
176 PF14938 SNAP: Soluble NSF att 97.4 0.02 4.3E-07 55.9 19.4 116 464-594 101-230 (282)
177 COG4700 Uncharacterized protei 97.4 0.023 4.9E-07 49.0 16.4 133 488-622 85-221 (251)
178 PF13431 TPR_17: Tetratricopep 97.4 0.00016 3.5E-09 43.9 2.8 33 583-615 2-34 (34)
179 cd00189 TPR Tetratricopeptide 97.4 0.0021 4.5E-08 50.5 10.4 88 501-591 9-99 (100)
180 COG3898 Uncharacterized membra 97.4 0.16 3.5E-06 49.4 28.2 244 360-623 130-392 (531)
181 CHL00033 ycf3 photosystem I as 97.3 0.0052 1.1E-07 54.8 13.1 80 457-539 35-117 (168)
182 PRK10153 DNA-binding transcrip 97.3 0.0074 1.6E-07 63.7 15.8 134 487-624 332-483 (517)
183 PF04840 Vps16_C: Vps16, C-ter 97.3 0.22 4.7E-06 49.0 31.9 122 429-570 180-301 (319)
184 KOG1258 mRNA processing protei 97.3 0.32 6.8E-06 50.4 30.2 184 423-609 294-490 (577)
185 PF12688 TPR_5: Tetratrico pep 97.2 0.0053 1.1E-07 50.2 10.9 88 534-621 7-102 (120)
186 PF08579 RPM2: Mitochondrial r 97.2 0.0059 1.3E-07 47.9 10.1 81 219-300 27-116 (120)
187 PRK10803 tol-pal system protei 97.2 0.003 6.5E-08 60.1 10.5 94 529-622 144-245 (263)
188 KOG0550 Molecular chaperone (D 97.2 0.16 3.5E-06 49.8 21.7 87 465-554 257-347 (486)
189 PF04840 Vps16_C: Vps16, C-ter 97.2 0.27 5.9E-06 48.4 31.0 82 292-375 181-262 (319)
190 PF10037 MRP-S27: Mitochondria 97.2 0.005 1.1E-07 62.2 12.2 118 183-301 63-186 (429)
191 PF14559 TPR_19: Tetratricopep 97.1 0.00061 1.3E-08 49.9 4.2 57 504-563 3-61 (68)
192 KOG1538 Uncharacterized conser 97.1 0.061 1.3E-06 55.4 19.2 105 118-245 558-673 (1081)
193 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0022 4.8E-08 64.0 9.0 65 559-623 74-141 (453)
194 PF13281 DUF4071: Domain of un 97.1 0.16 3.4E-06 50.5 21.4 165 427-594 142-339 (374)
195 KOG0543 FKBP-type peptidyl-pro 97.1 0.0044 9.6E-08 60.4 10.5 63 560-622 257-319 (397)
196 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.36 7.9E-06 47.9 33.3 93 35-129 25-122 (660)
197 PF10037 MRP-S27: Mitochondria 97.1 0.0089 1.9E-07 60.4 13.0 120 146-265 61-186 (429)
198 COG4700 Uncharacterized protei 97.1 0.019 4.2E-07 49.4 12.7 105 520-624 81-190 (251)
199 PF13414 TPR_11: TPR repeat; P 97.1 0.0017 3.8E-08 47.6 6.0 65 527-591 2-69 (69)
200 PRK15363 pathogenicity island 97.0 0.014 3.1E-07 49.5 11.6 28 562-589 105-132 (157)
201 PF12688 TPR_5: Tetratrico pep 97.0 0.029 6.2E-07 46.0 12.7 108 355-466 6-115 (120)
202 PF13424 TPR_12: Tetratricopep 97.0 0.0015 3.3E-08 49.3 5.0 62 561-622 6-74 (78)
203 KOG1538 Uncharacterized conser 97.0 0.11 2.4E-06 53.6 19.1 98 254-379 749-846 (1081)
204 PF08579 RPM2: Mitochondrial r 96.9 0.016 3.4E-07 45.6 10.2 80 353-438 28-116 (120)
205 PF06239 ECSIT: Evolutionarily 96.9 0.0059 1.3E-07 54.4 9.0 89 113-201 44-153 (228)
206 KOG2280 Vacuolar assembly/sort 96.9 0.76 1.6E-05 48.8 27.4 337 45-408 423-793 (829)
207 PF13428 TPR_14: Tetratricopep 96.9 0.0019 4.2E-08 42.1 4.3 42 561-602 2-43 (44)
208 PRK10866 outer membrane biogen 96.9 0.19 4.1E-06 47.5 19.3 175 426-621 32-239 (243)
209 PF05843 Suf: Suppressor of fo 96.8 0.042 9.2E-07 53.4 15.0 126 352-485 3-135 (280)
210 PF06239 ECSIT: Evolutionarily 96.8 0.015 3.3E-07 51.9 10.4 96 447-543 35-153 (228)
211 PRK10803 tol-pal system protei 96.8 0.02 4.4E-07 54.5 12.0 101 495-595 146-252 (263)
212 COG3898 Uncharacterized membra 96.8 0.61 1.3E-05 45.5 26.4 239 301-554 133-389 (531)
213 PF13371 TPR_9: Tetratricopept 96.8 0.0054 1.2E-07 45.5 6.5 62 536-597 3-66 (73)
214 PF07079 DUF1347: Protein of u 96.7 0.73 1.6E-05 46.0 38.5 121 440-565 394-530 (549)
215 PF14432 DYW_deaminase: DYW fa 96.7 0.0014 3.1E-08 53.3 3.4 46 630-687 2-48 (116)
216 KOG2041 WD40 repeat protein [G 96.7 1 2.3E-05 47.3 24.4 199 183-409 689-902 (1189)
217 KOG1130 Predicted G-alpha GTPa 96.6 0.022 4.7E-07 55.3 10.9 128 387-519 197-342 (639)
218 KOG2796 Uncharacterized conser 96.5 0.11 2.5E-06 47.5 13.7 194 52-245 67-314 (366)
219 PRK10866 outer membrane biogen 96.4 0.76 1.6E-05 43.5 20.2 58 356-415 38-99 (243)
220 PF13525 YfiO: Outer membrane 96.4 0.26 5.7E-06 45.3 16.6 165 429-614 8-198 (203)
221 PF13525 YfiO: Outer membrane 96.4 0.42 9.1E-06 43.9 17.9 140 461-622 9-169 (203)
222 PF13424 TPR_12: Tetratricopep 96.4 0.0048 1E-07 46.6 4.0 61 529-589 6-75 (78)
223 KOG2796 Uncharacterized conser 96.3 0.36 7.8E-06 44.3 15.9 93 429-521 139-241 (366)
224 PRK11906 transcriptional regul 96.3 0.077 1.7E-06 53.4 12.7 62 559-620 337-398 (458)
225 KOG0543 FKBP-type peptidyl-pro 96.2 0.056 1.2E-06 53.0 11.4 138 464-623 215-355 (397)
226 KOG2280 Vacuolar assembly/sort 96.2 2.3 5E-05 45.4 31.4 109 429-553 687-795 (829)
227 PF03704 BTAD: Bacterial trans 96.1 0.028 6.1E-07 48.6 8.3 61 562-622 64-124 (146)
228 PF13512 TPR_18: Tetratricopep 96.1 0.16 3.5E-06 42.5 12.0 88 535-622 17-127 (142)
229 KOG4555 TPR repeat-containing 96.0 0.078 1.7E-06 42.8 9.3 90 536-625 51-146 (175)
230 PF09205 DUF1955: Domain of un 96.0 0.64 1.4E-05 37.9 14.2 141 467-626 12-152 (161)
231 COG5107 RNA14 Pre-mRNA 3'-end 95.9 2.1 4.5E-05 42.8 30.8 135 455-593 395-535 (660)
232 PRK11906 transcriptional regul 95.9 0.69 1.5E-05 46.9 17.3 159 458-619 252-432 (458)
233 KOG2610 Uncharacterized conser 95.9 0.17 3.8E-06 48.0 12.2 16 689-704 395-410 (491)
234 COG4235 Cytochrome c biogenesi 95.7 0.36 7.8E-06 45.7 13.8 103 491-595 155-262 (287)
235 COG0457 NrfG FOG: TPR repeat [ 95.6 1.9 4.2E-05 40.3 27.5 194 426-623 59-265 (291)
236 COG1729 Uncharacterized protei 95.6 0.094 2E-06 48.8 9.5 91 530-623 144-244 (262)
237 PF12921 ATP13: Mitochondrial 95.6 0.16 3.4E-06 42.1 10.0 49 488-536 48-96 (126)
238 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.073 1.6E-06 53.5 9.4 62 528-589 75-141 (453)
239 KOG1920 IkappaB kinase complex 95.5 4.8 0.0001 45.6 22.9 65 295-377 959-1026(1265)
240 KOG2114 Vacuolar assembly/sort 95.4 2.4 5.2E-05 45.9 19.7 54 431-484 710-763 (933)
241 KOG1585 Protein required for f 95.3 2.2 4.8E-05 39.0 16.7 26 352-377 33-58 (308)
242 PF04184 ST7: ST7 protein; In 95.3 1.7 3.7E-05 44.3 17.4 18 578-595 364-381 (539)
243 PF12921 ATP13: Mitochondrial 95.2 0.23 5E-06 41.1 9.7 54 247-300 47-100 (126)
244 KOG1941 Acetylcholine receptor 95.1 0.39 8.5E-06 46.2 11.8 195 427-621 44-273 (518)
245 PF00515 TPR_1: Tetratricopept 95.1 0.053 1.1E-06 32.8 4.2 32 561-592 2-33 (34)
246 COG3118 Thioredoxin domain-con 95.0 2.9 6.4E-05 39.6 17.0 51 466-518 143-194 (304)
247 PF07719 TPR_2: Tetratricopept 94.9 0.082 1.8E-06 31.9 4.9 32 562-593 3-34 (34)
248 PF13281 DUF4071: Domain of un 94.9 1.3 2.8E-05 44.2 15.5 170 191-379 146-334 (374)
249 PF10300 DUF3808: Protein of u 94.7 1.5 3.3E-05 46.2 16.5 115 505-622 246-375 (468)
250 PF13512 TPR_18: Tetratricopep 94.7 0.98 2.1E-05 37.9 12.0 114 465-595 18-134 (142)
251 KOG3941 Intermediate in Toll s 94.7 0.31 6.8E-06 45.2 9.7 98 446-544 54-174 (406)
252 COG4105 ComL DNA uptake lipopr 94.7 1.7 3.6E-05 40.4 14.4 136 464-623 41-196 (254)
253 PF03704 BTAD: Bacterial trans 94.6 0.37 7.9E-06 41.6 10.0 69 460-530 65-138 (146)
254 PF07035 Mic1: Colon cancer-as 94.6 1.4 3E-05 38.4 13.2 128 5-138 15-142 (167)
255 KOG3941 Intermediate in Toll s 94.5 0.29 6.3E-06 45.4 9.2 108 106-213 55-186 (406)
256 PF04184 ST7: ST7 protein; In 94.5 0.98 2.1E-05 45.9 13.5 148 468-627 179-328 (539)
257 smart00299 CLH Clathrin heavy 94.5 2.3 5.1E-05 36.2 14.7 43 119-162 10-52 (140)
258 COG3118 Thioredoxin domain-con 94.5 1.6 3.6E-05 41.3 14.1 120 501-624 143-266 (304)
259 PF04053 Coatomer_WDAD: Coatom 94.2 1.3 2.8E-05 45.9 14.4 154 126-312 271-426 (443)
260 KOG4234 TPR repeat-containing 94.1 0.2 4.4E-06 43.9 6.8 89 536-624 103-198 (271)
261 smart00299 CLH Clathrin heavy 94.0 3.1 6.8E-05 35.4 14.5 80 431-517 12-94 (140)
262 COG0457 NrfG FOG: TPR repeat [ 93.9 5.4 0.00012 37.1 25.9 219 364-592 37-268 (291)
263 COG1729 Uncharacterized protei 93.9 0.73 1.6E-05 43.1 10.6 92 460-554 145-241 (262)
264 COG4105 ComL DNA uptake lipopr 93.7 6 0.00013 36.9 19.6 174 426-621 35-231 (254)
265 PF04053 Coatomer_WDAD: Coatom 93.7 4.1 8.8E-05 42.4 16.8 98 331-451 330-427 (443)
266 KOG1585 Protein required for f 93.6 5.9 0.00013 36.4 15.9 85 532-617 154-250 (308)
267 PF10300 DUF3808: Protein of u 93.5 12 0.00025 39.6 22.7 110 303-413 248-375 (468)
268 KOG4555 TPR repeat-containing 93.4 0.27 5.9E-06 39.8 6.0 55 569-623 52-106 (175)
269 KOG4648 Uncharacterized conser 93.4 0.43 9.2E-06 45.6 8.2 87 536-622 105-193 (536)
270 PF13176 TPR_7: Tetratricopept 93.3 0.18 3.8E-06 31.0 3.9 26 596-621 1-26 (36)
271 KOG2610 Uncharacterized conser 93.0 1 2.3E-05 43.0 10.0 159 469-630 115-283 (491)
272 PF08631 SPO22: Meiosis protei 92.9 9.6 0.00021 37.0 22.1 88 359-453 44-148 (278)
273 KOG2114 Vacuolar assembly/sort 92.7 18 0.0004 39.6 28.0 174 190-376 338-516 (933)
274 PF14853 Fis1_TPR_C: Fis1 C-te 92.6 0.78 1.7E-05 31.0 6.5 50 597-672 4-53 (53)
275 KOG1941 Acetylcholine receptor 92.5 8 0.00017 37.8 15.2 202 351-554 44-272 (518)
276 PF09613 HrpB1_HrpK: Bacterial 92.4 4.6 0.0001 34.7 12.4 90 500-592 18-109 (160)
277 PF13181 TPR_8: Tetratricopept 92.3 0.28 6.1E-06 29.5 3.9 31 562-592 3-33 (34)
278 PRK15331 chaperone protein Sic 92.3 1.6 3.4E-05 37.7 9.5 87 359-453 46-132 (165)
279 PF13176 TPR_7: Tetratricopept 91.8 0.34 7.3E-06 29.7 3.8 28 562-589 1-28 (36)
280 PF02259 FAT: FAT domain; Int 91.5 17 0.00037 36.7 21.2 150 455-607 144-305 (352)
281 PRK11619 lytic murein transgly 91.4 26 0.00057 38.6 31.4 127 470-603 254-385 (644)
282 KOG3364 Membrane protein invol 91.2 2.6 5.6E-05 34.7 9.0 74 574-673 49-124 (149)
283 PF07035 Mic1: Colon cancer-as 91.0 10 0.00022 33.1 14.0 36 237-272 14-49 (167)
284 PF00637 Clathrin: Region in C 90.9 0.18 4E-06 43.3 2.7 86 24-112 12-97 (143)
285 KOG1586 Protein required for f 90.7 13 0.00029 34.0 16.3 133 438-595 85-230 (288)
286 KOG1586 Protein required for f 90.6 13 0.00029 34.0 13.8 91 533-623 118-224 (288)
287 PF09205 DUF1955: Domain of un 90.6 8.6 0.00019 31.7 12.6 18 397-414 14-31 (161)
288 PRK09687 putative lyase; Provi 90.4 18 0.00039 35.1 24.4 26 565-591 240-265 (280)
289 TIGR02561 HrpB1_HrpK type III 90.4 2.2 4.8E-05 35.9 8.3 53 572-624 22-74 (153)
290 PF13428 TPR_14: Tetratricopep 90.3 0.94 2E-05 29.3 5.0 33 459-493 3-35 (44)
291 COG3629 DnrI DNA-binding trans 90.2 1.6 3.6E-05 41.5 8.4 61 562-622 155-215 (280)
292 PF10602 RPN7: 26S proteasome 90.1 6.6 0.00014 35.0 11.9 58 427-484 37-100 (177)
293 COG3947 Response regulator con 89.7 15 0.00033 34.8 13.8 59 564-622 283-341 (361)
294 COG1747 Uncharacterized N-term 89.5 28 0.00061 36.0 20.0 157 351-520 67-233 (711)
295 cd00923 Cyt_c_Oxidase_Va Cytoc 89.2 2.1 4.5E-05 32.8 6.6 58 3-62 26-84 (103)
296 KOG2066 Vacuolar assembly/sort 89.2 38 0.00082 37.0 26.7 75 187-264 393-467 (846)
297 KOG2066 Vacuolar assembly/sort 89.2 38 0.00083 37.0 24.6 166 61-245 363-533 (846)
298 PF00515 TPR_1: Tetratricopept 88.8 1.1 2.3E-05 26.9 4.2 32 458-491 2-33 (34)
299 PF09613 HrpB1_HrpK: Bacterial 88.8 3.3 7.1E-05 35.6 8.3 70 540-609 22-93 (160)
300 PF07719 TPR_2: Tetratricopept 88.6 0.75 1.6E-05 27.5 3.4 29 595-623 2-30 (34)
301 COG4785 NlpI Lipoprotein NlpI, 88.6 18 0.0004 32.7 14.5 158 456-623 98-266 (297)
302 COG3629 DnrI DNA-binding trans 88.2 3.6 7.7E-05 39.3 9.1 77 425-501 152-236 (280)
303 PF02259 FAT: FAT domain; Int 87.8 30 0.00065 35.0 16.8 68 558-625 144-215 (352)
304 KOG1498 26S proteasome regulat 87.7 18 0.00039 35.9 13.4 106 532-637 135-255 (439)
305 PF13174 TPR_6: Tetratricopept 87.7 1.2 2.6E-05 26.3 3.9 27 566-592 6-32 (33)
306 PF04097 Nic96: Nup93/Nic96; 87.5 50 0.0011 36.4 20.0 86 358-453 266-354 (613)
307 PF13374 TPR_10: Tetratricopep 87.1 1.6 3.4E-05 27.6 4.5 27 562-588 4-30 (42)
308 COG4649 Uncharacterized protei 87.1 12 0.00025 32.6 10.4 63 86-149 60-127 (221)
309 COG4785 NlpI Lipoprotein NlpI, 87.0 7.4 0.00016 35.1 9.6 110 502-617 75-189 (297)
310 PRK09687 putative lyase; Provi 86.8 32 0.00069 33.4 25.3 120 287-413 141-262 (280)
311 KOG1920 IkappaB kinase complex 86.3 71 0.0015 37.0 22.3 111 433-554 915-1025(1265)
312 PRK10941 hypothetical protein; 86.3 3.9 8.5E-05 39.1 8.4 62 562-623 183-244 (269)
313 PF13374 TPR_10: Tetratricopep 86.3 1.4 3.1E-05 27.8 3.9 28 595-622 3-30 (42)
314 PF02284 COX5A: Cytochrome c o 86.1 3.6 7.7E-05 32.0 6.3 60 3-63 29-88 (108)
315 PF08631 SPO22: Meiosis protei 86.0 35 0.00077 33.1 25.3 17 31-47 5-21 (278)
316 PF07721 TPR_4: Tetratricopept 85.8 1.2 2.5E-05 24.9 2.8 23 596-618 3-25 (26)
317 PRK11619 lytic murein transgly 85.8 62 0.0013 35.8 40.6 260 91-377 105-373 (644)
318 PF11207 DUF2989: Protein of u 85.8 4.9 0.00011 36.0 8.0 75 539-614 118-198 (203)
319 PF13181 TPR_8: Tetratricopept 85.6 1.9 4.1E-05 25.7 4.0 27 596-622 3-29 (34)
320 PF06552 TOM20_plant: Plant sp 85.4 10 0.00022 33.3 9.5 47 575-621 50-100 (186)
321 KOG0376 Serine-threonine phosp 85.2 1.6 3.4E-05 44.3 5.3 86 536-621 12-99 (476)
322 PF10602 RPN7: 26S proteasome 84.9 13 0.00027 33.2 10.4 95 458-554 37-139 (177)
323 PF13170 DUF4003: Protein of u 84.7 42 0.00091 32.9 16.0 49 234-282 79-133 (297)
324 TIGR02561 HrpB1_HrpK type III 84.1 20 0.00043 30.5 10.3 66 504-572 22-89 (153)
325 TIGR02508 type_III_yscG type I 83.7 16 0.00035 28.4 8.7 59 327-388 47-105 (115)
326 PF13431 TPR_17: Tetratricopep 83.7 1.6 3.4E-05 26.3 2.9 24 423-446 10-33 (34)
327 KOG4570 Uncharacterized conser 83.6 10 0.00022 36.4 9.3 101 180-282 58-165 (418)
328 KOG0276 Vesicle coat complex C 83.4 21 0.00046 37.5 12.2 151 437-620 597-747 (794)
329 COG2976 Uncharacterized protei 83.3 33 0.00072 30.7 13.8 90 499-593 96-192 (207)
330 PF13174 TPR_6: Tetratricopept 83.1 1.8 3.9E-05 25.5 3.1 28 596-623 2-29 (33)
331 PF02284 COX5A: Cytochrome c o 82.7 8.4 0.00018 30.0 7.0 60 475-536 28-87 (108)
332 cd00923 Cyt_c_Oxidase_Va Cytoc 82.7 10 0.00022 29.3 7.3 62 473-536 23-84 (103)
333 KOG4642 Chaperone-dependent E3 82.3 4.4 9.4E-05 37.1 6.3 84 502-588 20-106 (284)
334 KOG4234 TPR repeat-containing 82.1 18 0.00039 32.3 9.7 60 536-595 142-203 (271)
335 KOG1258 mRNA processing protei 81.7 76 0.0017 33.7 31.8 135 86-221 46-186 (577)
336 PF00637 Clathrin: Region in C 81.4 1.2 2.6E-05 38.2 2.6 84 157-243 13-96 (143)
337 smart00028 TPR Tetratricopepti 81.1 3.5 7.5E-05 23.4 4.0 29 563-591 4-32 (34)
338 PF14853 Fis1_TPR_C: Fis1 C-te 81.1 4.2 9.1E-05 27.5 4.5 32 564-595 5-36 (53)
339 KOG0890 Protein kinase of the 80.4 1.7E+02 0.0037 37.0 31.9 64 560-625 1670-1733(2382)
340 KOG0545 Aryl-hydrocarbon recep 80.2 29 0.00062 32.2 10.6 87 536-622 186-292 (329)
341 KOG4648 Uncharacterized conser 80.0 6.2 0.00013 38.1 6.7 50 465-516 105-155 (536)
342 KOG1550 Extracellular protein 79.9 97 0.0021 33.7 21.3 246 362-623 261-538 (552)
343 PF10345 Cohesin_load: Cohesin 79.7 1E+02 0.0023 34.0 40.1 152 163-315 72-252 (608)
344 KOG4570 Uncharacterized conser 78.8 8.3 0.00018 36.9 7.1 95 423-521 61-164 (418)
345 KOG0276 Vesicle coat complex C 78.4 44 0.00095 35.4 12.5 132 290-452 616-747 (794)
346 KOG1308 Hsp70-interacting prot 77.5 1.5 3.3E-05 42.2 2.1 92 540-631 126-219 (377)
347 TIGR03504 FimV_Cterm FimV C-te 76.7 5 0.00011 25.9 3.6 27 598-624 3-29 (44)
348 PF11207 DUF2989: Protein of u 76.4 10 0.00022 34.1 6.6 73 30-104 118-197 (203)
349 KOG4077 Cytochrome c oxidase, 75.2 11 0.00024 30.6 5.9 44 3-46 68-111 (149)
350 KOG0551 Hsp90 co-chaperone CNS 74.8 17 0.00036 35.3 7.9 90 531-620 84-179 (390)
351 COG4649 Uncharacterized protei 74.3 60 0.0013 28.4 15.8 121 467-588 68-195 (221)
352 PF09986 DUF2225: Uncharacteri 74.2 20 0.00044 33.0 8.5 63 562-624 120-195 (214)
353 PF07721 TPR_4: Tetratricopept 74.1 6.2 0.00014 21.9 3.2 20 533-552 6-25 (26)
354 PF06552 TOM20_plant: Plant sp 74.0 63 0.0014 28.6 12.6 46 576-628 96-141 (186)
355 PF10579 Rapsyn_N: Rapsyn N-te 73.7 8.3 0.00018 28.5 4.5 47 504-550 18-65 (80)
356 COG4455 ImpE Protein of avirul 73.6 15 0.00033 33.3 6.9 89 532-627 5-95 (273)
357 KOG1464 COP9 signalosome, subu 73.5 83 0.0018 29.7 18.3 180 429-608 68-286 (440)
358 PF14561 TPR_20: Tetratricopep 73.1 13 0.00027 28.7 5.8 45 580-624 8-52 (90)
359 smart00386 HAT HAT (Half-A-TPR 73.1 7.5 0.00016 22.5 3.8 30 574-603 1-30 (33)
360 PRK15180 Vi polysaccharide bio 71.0 70 0.0015 32.8 11.6 120 469-592 301-423 (831)
361 KOG2063 Vacuolar assembly/sort 70.0 97 0.0021 35.2 13.6 40 123-162 598-637 (877)
362 smart00028 TPR Tetratricopepti 69.4 7.7 0.00017 21.8 3.3 28 595-622 2-29 (34)
363 KOG4279 Serine/threonine prote 67.4 1.4E+02 0.0029 32.9 13.2 176 425-603 200-409 (1226)
364 PRK15180 Vi polysaccharide bio 66.9 42 0.0009 34.4 9.1 134 433-569 296-434 (831)
365 TIGR02508 type_III_yscG type I 66.8 60 0.0013 25.4 8.9 85 167-255 21-105 (115)
366 PF13170 DUF4003: Protein of u 66.8 1.3E+02 0.0029 29.4 15.7 146 473-620 78-243 (297)
367 PF12862 Apc5: Anaphase-promot 65.6 23 0.00051 27.5 6.0 53 570-622 8-69 (94)
368 PF07163 Pex26: Pex26 protein; 65.6 65 0.0014 30.7 9.5 88 464-554 90-184 (309)
369 COG1747 Uncharacterized N-term 65.2 1.8E+02 0.004 30.4 22.6 159 383-554 64-231 (711)
370 COG2976 Uncharacterized protei 65.0 1.1E+02 0.0023 27.6 14.6 88 394-487 98-189 (207)
371 cd08819 CARD_MDA5_2 Caspase ac 64.6 48 0.001 25.2 6.9 66 170-237 21-86 (88)
372 PF09670 Cas_Cas02710: CRISPR- 64.3 1.2E+02 0.0027 30.9 12.5 54 466-520 140-197 (379)
373 PF13762 MNE1: Mitochondrial s 64.3 54 0.0012 27.9 8.1 77 88-164 42-128 (145)
374 cd08819 CARD_MDA5_2 Caspase ac 63.9 52 0.0011 25.0 7.0 66 404-477 21-86 (88)
375 PRK12798 chemotaxis protein; R 63.7 1.8E+02 0.0039 29.8 23.2 181 438-621 124-322 (421)
376 PHA02875 ankyrin repeat protei 63.5 1.9E+02 0.0041 30.0 16.8 196 44-252 20-230 (413)
377 KOG2396 HAT (Half-A-TPR) repea 62.9 2E+02 0.0044 30.1 34.0 389 215-621 103-557 (568)
378 PHA02875 ankyrin repeat protei 62.3 2E+02 0.0043 29.9 16.8 198 5-216 16-229 (413)
379 PRK13800 putative oxidoreducta 62.0 3.2E+02 0.0068 32.1 27.3 107 423-537 786-893 (897)
380 PF07720 TPR_3: Tetratricopept 61.9 34 0.00073 21.0 4.9 30 563-592 4-35 (36)
381 PF10579 Rapsyn_N: Rapsyn N-te 61.4 24 0.00053 26.1 4.8 47 469-515 18-66 (80)
382 KOG1464 COP9 signalosome, subu 61.2 1.5E+02 0.0033 28.0 16.9 225 353-584 68-327 (440)
383 KOG1550 Extracellular protein 60.8 2.5E+02 0.0055 30.6 22.0 286 268-592 228-541 (552)
384 PF07163 Pex26: Pex26 protein; 59.9 67 0.0015 30.6 8.6 87 123-209 90-181 (309)
385 KOG4507 Uncharacterized conser 59.9 38 0.00083 35.6 7.6 100 503-605 618-721 (886)
386 PRK13800 putative oxidoreducta 59.1 3.5E+02 0.0077 31.7 26.9 50 526-575 787-836 (897)
387 PF04190 DUF410: Protein of un 59.0 1.7E+02 0.0037 28.0 19.3 84 423-521 87-170 (260)
388 TIGR03504 FimV_Cterm FimV C-te 58.4 23 0.00049 22.9 3.8 24 463-486 5-28 (44)
389 PF12862 Apc5: Anaphase-promot 58.3 56 0.0012 25.3 7.0 24 566-589 47-70 (94)
390 KOG4507 Uncharacterized conser 58.1 45 0.00098 35.1 7.8 135 488-625 567-707 (886)
391 PF11768 DUF3312: Protein of u 57.8 1.8E+02 0.0038 30.9 12.0 62 430-491 412-478 (545)
392 PF10345 Cohesin_load: Cohesin 56.9 3.1E+02 0.0067 30.4 33.8 50 360-409 371-428 (608)
393 PF09477 Type_III_YscG: Bacter 56.8 1E+02 0.0022 24.6 8.9 79 32-113 19-97 (116)
394 PRK10941 hypothetical protein; 56.7 91 0.002 30.0 9.3 66 531-596 184-251 (269)
395 PF04190 DUF410: Protein of un 56.6 1.9E+02 0.0041 27.8 15.6 81 527-623 89-170 (260)
396 KOG0403 Neoplastic transformat 56.5 2.4E+02 0.0052 29.0 17.5 58 430-487 513-573 (645)
397 COG0735 Fur Fe2+/Zn2+ uptake r 55.9 60 0.0013 27.8 7.3 66 3-69 5-70 (145)
398 cd08326 CARD_CASP9 Caspase act 55.3 22 0.00048 26.9 4.0 36 96-131 41-76 (84)
399 KOG4077 Cytochrome c oxidase, 53.3 79 0.0017 26.0 6.8 59 475-535 67-125 (149)
400 PF14863 Alkyl_sulf_dimr: Alky 53.0 70 0.0015 27.2 7.0 65 544-611 57-121 (141)
401 PF11846 DUF3366: Domain of un 52.3 50 0.0011 29.9 6.7 35 557-591 141-175 (193)
402 PF10366 Vps39_1: Vacuolar sor 52.0 1.2E+02 0.0027 24.3 8.0 27 459-485 41-67 (108)
403 PF13762 MNE1: Mitochondrial s 51.2 1.6E+02 0.0034 25.2 11.3 82 118-199 41-128 (145)
404 PF11848 DUF3368: Domain of un 51.2 44 0.00095 22.1 4.5 38 26-63 9-46 (48)
405 TIGR02270 conserved hypothetic 51.0 3E+02 0.0066 28.5 23.0 120 185-315 160-279 (410)
406 PF08311 Mad3_BUB1_I: Mad3/BUB 50.8 1.2E+02 0.0026 25.1 8.1 42 578-619 81-124 (126)
407 PF09477 Type_III_YscG: Bacter 49.8 1.3E+02 0.0029 24.0 8.8 78 400-486 21-98 (116)
408 PF00244 14-3-3: 14-3-3 protei 49.5 2.3E+02 0.005 26.7 12.0 162 463-625 7-200 (236)
409 PF14561 TPR_20: Tetratricopep 48.1 1.3E+02 0.0027 23.2 8.1 62 559-620 21-85 (90)
410 KOG3807 Predicted membrane pro 48.0 2.8E+02 0.0061 27.2 14.7 94 503-596 286-398 (556)
411 PRK13342 recombination factor 47.6 3.5E+02 0.0075 28.2 15.6 112 132-261 153-274 (413)
412 cd00280 TRFH Telomeric Repeat 47.1 1.3E+02 0.0027 26.8 7.7 20 61-80 118-137 (200)
413 PF11846 DUF3366: Domain of un 46.7 83 0.0018 28.5 7.3 52 503-554 119-170 (193)
414 PF10366 Vps39_1: Vacuolar sor 46.5 1.2E+02 0.0027 24.3 7.2 28 351-378 40-67 (108)
415 COG4976 Predicted methyltransf 46.5 36 0.00079 31.2 4.5 57 538-594 5-63 (287)
416 COG5071 RPN5 26S proteasome re 46.2 2.8E+02 0.0062 26.8 11.5 113 532-644 135-262 (439)
417 COG2912 Uncharacterized conser 46.1 76 0.0017 30.2 6.8 58 565-622 186-243 (269)
418 PF08311 Mad3_BUB1_I: Mad3/BUB 46.0 1.6E+02 0.0035 24.4 8.1 42 37-78 81-123 (126)
419 KOG0686 COP9 signalosome, subu 45.8 3.4E+02 0.0075 27.6 12.1 59 187-245 151-215 (466)
420 COG4976 Predicted methyltransf 45.4 41 0.00088 30.9 4.7 56 570-625 5-60 (287)
421 COG3947 Response regulator con 45.2 3E+02 0.0064 26.7 12.6 56 461-518 283-339 (361)
422 PF11663 Toxin_YhaV: Toxin wit 44.9 26 0.00057 29.0 3.1 34 126-161 105-138 (140)
423 PF07575 Nucleopor_Nup85: Nup8 44.2 4.6E+02 0.01 28.7 16.8 57 55-113 114-176 (566)
424 COG5159 RPN6 26S proteasome re 44.1 3E+02 0.0065 26.5 13.8 154 356-515 9-188 (421)
425 PRK09169 hypothetical protein; 42.8 8.6E+02 0.019 31.4 48.6 535 16-554 243-921 (2316)
426 cd08332 CARD_CASP2 Caspase act 41.7 43 0.00092 25.8 3.8 30 99-128 48-77 (90)
427 TIGR02270 conserved hypothetic 41.3 4.3E+02 0.0093 27.4 24.2 19 224-244 45-63 (410)
428 PF04910 Tcf25: Transcriptiona 41.2 4E+02 0.0087 27.1 18.4 52 500-554 111-165 (360)
429 COG4455 ImpE Protein of avirul 41.1 2.9E+02 0.0064 25.5 12.4 123 460-595 4-140 (273)
430 PF04097 Nic96: Nup93/Nic96; 40.6 5.5E+02 0.012 28.5 28.9 51 115-166 110-160 (613)
431 KOG4642 Chaperone-dependent E3 40.4 3.2E+02 0.0069 25.7 10.3 112 467-583 20-140 (284)
432 KOG3824 Huntingtin interacting 40.3 94 0.002 29.9 6.4 58 539-596 127-186 (472)
433 PF11663 Toxin_YhaV: Toxin wit 40.3 33 0.00072 28.5 3.1 33 468-502 106-138 (140)
434 smart00638 LPD_N Lipoprotein N 40.1 5.4E+02 0.012 28.2 21.6 29 117-145 341-369 (574)
435 PF14669 Asp_Glu_race_2: Putat 39.6 2.9E+02 0.0062 24.9 14.0 159 144-313 1-206 (233)
436 PF11848 DUF3368: Domain of un 39.4 1.1E+02 0.0024 20.1 5.0 34 227-260 12-45 (48)
437 KOG2581 26S proteasome regulat 39.2 4.4E+02 0.0095 26.9 12.3 91 501-592 178-279 (493)
438 PF14689 SPOB_a: Sensor_kinase 37.7 65 0.0014 22.7 3.9 24 496-519 27-50 (62)
439 PF06957 COPI_C: Coatomer (COP 37.6 1.6E+02 0.0035 30.4 8.1 57 551-621 289-347 (422)
440 PF11838 ERAP1_C: ERAP1-like C 37.5 4.2E+02 0.009 26.2 18.1 112 507-619 145-262 (324)
441 PF12926 MOZART2: Mitotic-spin 37.5 1.8E+02 0.004 22.1 6.5 63 17-81 8-70 (88)
442 PRK10564 maltose regulon perip 36.2 63 0.0014 31.3 4.7 38 219-256 259-296 (303)
443 PRK10564 maltose regulon perip 36.2 60 0.0013 31.4 4.6 37 118-154 259-295 (303)
444 cd08326 CARD_CASP9 Caspase act 36.1 99 0.0021 23.5 4.9 31 335-365 46-76 (84)
445 KOG4567 GTPase-activating prot 35.6 2.8E+02 0.0062 27.0 8.7 77 39-116 263-349 (370)
446 KOG2297 Predicted translation 35.0 4.4E+02 0.0095 25.7 11.5 199 236-520 186-399 (412)
447 COG5159 RPN6 26S proteasome re 34.2 4.4E+02 0.0095 25.5 14.1 159 465-623 11-194 (421)
448 PF07575 Nucleopor_Nup85: Nup8 34.2 1.7E+02 0.0037 32.0 8.4 59 150-210 404-462 (566)
449 COG2909 MalT ATP-dependent tra 34.2 7.6E+02 0.016 28.2 29.2 183 437-619 469-684 (894)
450 COG5191 Uncharacterized conser 34.0 80 0.0017 30.5 4.9 76 526-601 105-183 (435)
451 cd08323 CARD_APAF1 Caspase act 33.4 95 0.0021 23.7 4.4 30 99-128 42-71 (86)
452 PF13929 mRNA_stabil: mRNA sta 33.2 4.6E+02 0.01 25.5 18.2 113 442-554 144-264 (292)
453 cd00280 TRFH Telomeric Repeat 32.8 2.4E+02 0.0052 25.2 7.2 56 508-563 85-146 (200)
454 KOG0292 Vesicle coat complex C 32.3 48 0.001 36.8 3.6 47 538-587 653-699 (1202)
455 PF12968 DUF3856: Domain of Un 32.2 2.9E+02 0.0062 22.7 9.9 59 562-620 57-126 (144)
456 KOG2659 LisH motif-containing 31.9 4.2E+02 0.0092 24.6 10.6 96 456-554 25-129 (228)
457 PF09454 Vps23_core: Vps23 cor 31.7 84 0.0018 22.4 3.7 52 15-67 4-55 (65)
458 PF10516 SHNi-TPR: SHNi-TPR; 31.6 1.2E+02 0.0026 18.9 3.8 28 595-622 2-29 (38)
459 KOG3824 Huntingtin interacting 31.0 71 0.0015 30.8 4.1 54 502-558 126-181 (472)
460 PRK14700 recombination factor 30.4 5.3E+02 0.011 25.3 10.1 65 352-416 125-197 (300)
461 PF14689 SPOB_a: Sensor_kinase 30.3 92 0.002 21.9 3.7 26 460-485 26-51 (62)
462 KOG0376 Serine-threonine phosp 29.8 1.1E+02 0.0024 31.6 5.5 97 435-536 13-113 (476)
463 PHA02878 ankyrin repeat protei 29.6 7.1E+02 0.015 26.4 14.2 39 173-211 149-190 (477)
464 KOG4567 GTPase-activating prot 29.5 5.1E+02 0.011 25.4 9.3 42 172-213 264-305 (370)
465 COG2909 MalT ATP-dependent tra 29.2 9.1E+02 0.02 27.6 29.6 83 163-245 427-525 (894)
466 COG4941 Predicted RNA polymera 29.0 5.6E+02 0.012 25.5 9.5 127 455-594 262-399 (415)
467 KOG3364 Membrane protein invol 28.8 3.6E+02 0.0078 22.8 8.9 32 565-596 76-107 (149)
468 COG5108 RPO41 Mitochondrial DN 28.8 3E+02 0.0065 30.0 8.4 47 462-508 33-81 (1117)
469 KOG2908 26S proteasome regulat 28.6 6E+02 0.013 25.3 10.8 52 502-553 85-140 (380)
470 COG0735 Fur Fe2+/Zn2+ uptake r 28.6 3.1E+02 0.0067 23.4 7.4 29 223-251 26-54 (145)
471 PRK11639 zinc uptake transcrip 28.4 2.5E+02 0.0055 24.7 7.0 57 11-68 18-74 (169)
472 PHA03100 ankyrin repeat protei 27.8 7.5E+02 0.016 26.2 15.4 26 25-54 38-63 (480)
473 cd08332 CARD_CASP2 Caspase act 27.5 1.6E+02 0.0035 22.7 4.9 28 335-362 50-77 (90)
474 PF10255 Paf67: RNA polymerase 27.2 1.8E+02 0.004 29.8 6.6 67 291-377 125-191 (404)
475 PF12583 TPPII_N: Tripeptidyl 27.2 2.7E+02 0.0058 23.2 6.1 37 570-606 86-122 (139)
476 PF08424 NRDE-2: NRDE-2, neces 27.0 6.4E+02 0.014 25.1 15.1 122 233-381 47-185 (321)
477 smart00777 Mad3_BUB1_I Mad3/BU 26.9 3.7E+02 0.008 22.3 8.1 72 544-618 49-123 (125)
478 PF12796 Ank_2: Ankyrin repeat 26.9 1.8E+02 0.004 21.8 5.4 14 96-109 5-18 (89)
479 PF12069 DUF3549: Protein of u 26.7 6.6E+02 0.014 25.2 11.6 133 91-225 172-306 (340)
480 KOG0292 Vesicle coat complex C 26.7 9.4E+02 0.02 27.6 11.7 131 434-588 651-781 (1202)
481 KOG2659 LisH motif-containing 26.1 4.8E+02 0.011 24.2 8.3 92 426-517 26-128 (228)
482 KOG0890 Protein kinase of the 25.8 1.6E+03 0.035 29.3 33.4 61 457-520 1670-1730(2382)
483 PF10255 Paf67: RNA polymerase 25.7 1.4E+02 0.0031 30.6 5.5 57 531-587 125-191 (404)
484 PF11817 Foie-gras_1: Foie gra 25.6 2.1E+02 0.0046 27.1 6.5 17 502-518 188-204 (247)
485 PRK11639 zinc uptake transcrip 25.4 3.1E+02 0.0067 24.2 7.0 31 224-254 32-62 (169)
486 COG5108 RPO41 Mitochondrial DN 25.2 3.8E+02 0.0083 29.2 8.4 22 293-314 33-54 (1117)
487 PRK09169 hypothetical protein; 24.7 1.7E+03 0.036 29.1 46.9 530 19-551 122-773 (2316)
488 PRK12356 glutaminase; Reviewed 24.7 6.9E+02 0.015 24.8 10.9 110 443-555 140-258 (319)
489 TIGR01503 MthylAspMut_E methyl 24.6 5.1E+02 0.011 27.0 9.0 249 365-667 29-315 (480)
490 PF05119 Terminase_4: Phage te 24.2 2.9E+02 0.0064 21.5 6.2 40 647-686 57-97 (100)
491 COG0790 FOG: TPR repeat, SEL1 24.2 6.6E+02 0.014 24.3 19.5 180 439-625 54-268 (292)
492 TIGR03581 EF_0839 conserved hy 23.8 2.2E+02 0.0048 26.1 5.6 60 388-452 166-234 (236)
493 KOG1308 Hsp70-interacting prot 23.7 13 0.00029 36.2 -2.0 100 571-683 125-225 (377)
494 KOG2396 HAT (Half-A-TPR) repea 23.7 9E+02 0.019 25.7 33.8 30 52-81 103-132 (568)
495 KOG2471 TPR repeat-containing 23.4 8.9E+02 0.019 25.6 17.4 101 435-538 249-379 (696)
496 PHA03100 ankyrin repeat protei 23.3 9E+02 0.019 25.6 14.0 71 5-79 49-130 (480)
497 PF15015 NYD-SP12_N: Spermatog 23.2 2.2E+02 0.0047 29.1 6.0 19 534-552 234-252 (569)
498 cd08810 CARD_BCL10 Caspase act 23.1 1.3E+02 0.0028 22.8 3.5 30 97-127 42-71 (84)
499 PF13934 ELYS: Nuclear pore co 22.6 6.4E+02 0.014 23.6 13.1 104 461-573 80-185 (226)
500 PF07064 RIC1: RIC1; InterPro 21.9 7.1E+02 0.015 23.9 14.8 25 429-453 85-109 (258)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.6e-100 Score=860.27 Aligned_cols=671 Identities=35% Similarity=0.628 Sum_probs=639.2
Q ss_pred CCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC----CChhhHHH
Q 005265 15 AFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN----KNVFTWNS 90 (705)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 90 (705)
-.|+..+++.++.++++.|++++|..+++.|.+.|++|+..+|..++.+|.+.+.++.|..++..+.+ +++..+|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 35778889999999999999999999999999999999999999999999999999999999987654 78889999
Q ss_pred HHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHH
Q 005265 91 IITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMG 170 (705)
Q Consensus 91 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 170 (705)
||.+|++.|+++.|.++|++|++||+.+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 005265 171 TQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEP 250 (705)
Q Consensus 171 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 250 (705)
.+++..+.+.|+.||..++|+||.+|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHH
Q 005265 251 DEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYA 330 (705)
Q Consensus 251 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 330 (705)
|..||+.++.+|++.|+++.|.+++..+.+.| +.||..+|++|+.+|+++|++++|.++|++|..+|..+|+++|.+|+
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999998 99999999999999999999999999999999888888887777766
Q ss_pred hcCC----------------------------------------------------------------------HHHHHH
Q 005265 331 KASS----------------------------------------------------------------------VKSARL 340 (705)
Q Consensus 331 ~~~~----------------------------------------------------------------------~~~A~~ 340 (705)
+.|+ +++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 5554 445555
Q ss_pred HHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCC
Q 005265 341 MFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLS 420 (705)
Q Consensus 341 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 420 (705)
+|++|.++|.++||.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~---- 520 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI---- 520 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC----
Confidence 56666667788888888888888888888999999875 5899999999999999999999999999999999999
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005265 421 GEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLC 500 (705)
Q Consensus 421 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 500 (705)
.++..++++|+++|+++|++++|.++|+.+ .+|..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 521 --~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 521 --GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred --CccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGE 580 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 580 (705)
+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 99999999999999999987889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCCCChhHHHHHH
Q 005265 581 YVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVL 660 (705)
Q Consensus 581 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 660 (705)
.+.+++++++|++...|..|+++|+..|+|++|.++++.|+++|++|+||+||+++++.+|.|.++|..||+.++|+..|
T Consensus 678 ~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l 757 (857)
T PLN03077 678 LAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVL 757 (857)
T ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcccCCC-cccccccccccc-cccchh
Q 005265 661 KMLTREMKRVGYVPNAS-DDEAYEEQNGSN-STSDCQ 695 (705)
Q Consensus 661 ~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~-~~~~~~ 695 (705)
+.+..+|++.||+|++. ++ +++|++|++ +..|||
T Consensus 758 ~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse 793 (857)
T PLN03077 758 EGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSE 793 (857)
T ss_pred HHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccH
Confidence 99999999999999999 66 557777777 555665
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.7e-85 Score=718.66 Aligned_cols=545 Identities=33% Similarity=0.629 Sum_probs=529.1
Q ss_pred CCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCC-CCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHH
Q 005265 113 ERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSEN-FALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSA 191 (705)
Q Consensus 113 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 191 (705)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3477799999999999999999999999998864 789999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHH
Q 005265 192 LIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEG 271 (705)
Q Consensus 192 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 271 (705)
|+.+|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCee
Q 005265 272 LQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVV 351 (705)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 351 (705)
.+++..+.+.| +.+|..++++|+++|+++|++++|. ++|++|.++|++
T Consensus 244 ~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~-------------------------------~vf~~m~~~~~v 291 (697)
T PLN03081 244 QQLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDAR-------------------------------CVFDGMPEKTTV 291 (697)
T ss_pred HHHHHHHHHhC-CCccceeHHHHHHHHHHCCCHHHHH-------------------------------HHHHhCCCCChh
Confidence 99999999998 9999999999999999999999999 666666778889
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHH
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNS 431 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (705)
+||.+|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..+.+.|+ +||..++++
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~------~~d~~~~~~ 365 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF------PLDIVANTA 365 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC------CCCeeehHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHH
Q 005265 432 LIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEG 511 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 511 (705)
|+++|+++|++++|.++|++|.++|..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005265 512 RKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 512 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 591 (705)
.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|..++++++++.|
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHHcC
Q 005265 592 SNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVG 671 (705)
Q Consensus 592 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g 671 (705)
++...|..|+++|++.|+|++|.++++.|+++|+++.||++|+++++.+|.|.++|..||+..+++..+..+..+|++.|
T Consensus 526 ~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 605 (697)
T PLN03081 526 EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG 605 (697)
T ss_pred CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC-ccccccccccccc-ccchh
Q 005265 672 YVPNAS-DDEAYEEQNGSNS-TSDCQ 695 (705)
Q Consensus 672 ~~~~~~-~~~~~~~~~~~~~-~~~~~ 695 (705)
|.|++. +++++++++|++. ..|||
T Consensus 606 y~~~~~~~~~~~~~~~~~~~~~~hse 631 (697)
T PLN03081 606 YVAEENELLPDVDEDEEKVSGRYHSE 631 (697)
T ss_pred CCCCcchhhccccHHHHHHHHHhccH
Confidence 999999 9999999888885 55655
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-75 Score=658.84 Aligned_cols=558 Identities=24% Similarity=0.353 Sum_probs=535.0
Q ss_pred CCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC----CChhhHHHH
Q 005265 16 FLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN----KNVFTWNSI 91 (705)
Q Consensus 16 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l 91 (705)
.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++++|++.+++..+.+++..+.+ ||+.+||+|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 5899999999999999999999999999999999999999999999999999999999999988864 899999999
Q ss_pred HHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHH
Q 005265 92 ITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGT 171 (705)
Q Consensus 92 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 171 (705)
|.+|++.|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 005265 172 QVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPD 251 (705)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 251 (705)
+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|.+||+++||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHh
Q 005265 252 EVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAK 331 (705)
Q Consensus 252 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 331 (705)
..||+.++.+|++.|+++.|.+++..+.+.| +.|+..++++|+++|+++|++++|.++|++|.++|+.+|+++|.+|++
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKG-LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhcC---CCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHH
Q 005265 332 ASSVKSARLMFTKML---ERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAH 408 (705)
Q Consensus 332 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 408 (705)
.|+.++|..+|++|. .||..+|+.++.+|++.|..+.+.+++..|.+.|+.||..+++.++.+|++.|+++.|..+|
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 999999999999994 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005265 409 THVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV----ERDWVSWNAMIVGCAQNGYGTEALGLFKKML 484 (705)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 484 (705)
..+ .+|..+||++|.+|++.|+.++|.++|++|. .||..||+.++.+|++.|++++|.++|+.|.
T Consensus 548 ~~~-----------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 548 NSH-----------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred Hhc-----------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 876 3799999999999999999999999999996 5899999999999999999999999999999
Q ss_pred -HCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HH
Q 005265 485 -LCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AV 561 (705)
Q Consensus 485 -~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~ 561 (705)
+.|+.|+..+|+.++.++++.|++++|.+++++| .+.|+..+|++|+.+|...|+.+.+....+++ .+.|+ ..
T Consensus 617 ~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Confidence 6799999999999999999999999999999988 57899999999999999999999988887766 56665 55
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
.|..+.+.|...|++++|.++.+.|.+.
T Consensus 693 ~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 693 YYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 6666677899999999999999999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-67 Score=582.49 Aligned_cols=523 Identities=18% Similarity=0.261 Sum_probs=482.6
Q ss_pred CCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCC-CCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHH
Q 005265 15 AFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQF-ASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIIT 93 (705)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 93 (705)
..++...|..++..|++.|++++|+++|+.|.+.|+ .++..+++.++.+|.+.|.+++|.++|+.|..||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 346788899999999999999999999999999994 6788888999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHhcCC----CCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHH
Q 005265 94 GLLKWGFIDDASRLFASMP----ERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKM 169 (705)
Q Consensus 94 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 169 (705)
+|++.|+++.|.++|+.|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+++.
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999997 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccC------CCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 005265 170 GTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMR------ERNIVSWNSLITCYEQNGPASDALEVFVRM 243 (705)
Q Consensus 170 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 243 (705)
|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 489999999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC----CCCc
Q 005265 244 MASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMP----IRNV 319 (705)
Q Consensus 244 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~ 319 (705)
.+.|+.|+..+|+.++.+|++.|++++|..+|++|.+.| +.||..+|+.++++|++.|++++|.++|++|. .++.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999999999999999999998 99999999999999999999999999999997 4688
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhc----CCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHH
Q 005265 320 VSETSMVSGYAKASSVKSARLMFTKM----LERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNAC 395 (705)
Q Consensus 320 ~~~~~li~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 395 (705)
.+|+++|.+|++.|++++|.++|++| ..||..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999 46899999999999999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH------ccCCCChhHHHHHHHHHHH
Q 005265 396 ANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFE------TMVERDWVSWNAMIVGCAQ 469 (705)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~~~~~~~~~~~~li~~~~~ 469 (705)
++.|+++.|.++|..|.+.|+ .||..+|++++.+|.+ ++++|..+.+ .+...+...|
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi------~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w--------- 827 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGI------KPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKW--------- 827 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccch---------
Confidence 999999999999999999999 9999999999977542 3455544433 2222233333
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005265 470 NGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKT 549 (705)
Q Consensus 470 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 549 (705)
.+.|+.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..+|++|++++++. .++|..
T Consensus 828 ---~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~ 901 (1060)
T PLN03218 828 ---TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFS 901 (1060)
T ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHH
Confidence 3569999999999999999999999998888899999999999888544 7788899999999998432 468999
Q ss_pred HHHhC---CCCCCHH
Q 005265 550 LIEAM---PMQPDAV 561 (705)
Q Consensus 550 ~~~~~---~~~p~~~ 561 (705)
++++| ++.|+..
T Consensus 902 l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 902 LLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHcCCCCCcc
Confidence 99998 5667654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.8e-66 Score=571.48 Aligned_cols=508 Identities=19% Similarity=0.268 Sum_probs=341.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHhcCCCCCcc-----cHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHH
Q 005265 83 KNVFTWNSIITGLLKWGFIDDASRLFASMPERDQC-----SWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSA 157 (705)
Q Consensus 83 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 157 (705)
++...|..++..+++.|++++|.++|+.|++++.. +++.++.+|.+.|.+++|+.+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 34445555555555555555555555555544332 233444555556666666666655542 566666666
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccC----CCCcchHHHHHHHHHhcCCh
Q 005265 158 LSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMR----ERNIVSWNSLITCYEQNGPA 233 (705)
Q Consensus 158 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~ 233 (705)
|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 66666666666666666666666666666666666666666666666666666665 35666666666666666666
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 005265 234 SDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRC-EKLRNDLVLGNALVDMYAKCGKLNEARCVFD 312 (705)
Q Consensus 234 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (705)
++|+++|++|...|+.||..||+.++.+|++.|++++|.++|..|.+. .++.||..+|++++.+|+++|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666666666677667777777776666777777766666542 1266666677777777777666666665554
Q ss_pred hCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHH
Q 005265 313 RMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLL 392 (705)
Q Consensus 313 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 392 (705)
.|.+.+ ..|+..+||.+|.+|++.|++++|+.+|++|.+.|+.||..||+.++
T Consensus 604 ~M~e~g---------------------------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI 656 (1060)
T PLN03218 604 MIHEYN---------------------------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV 656 (1060)
T ss_pred HHHHcC---------------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 433222 24555666666666666777777777777777777777777777777
Q ss_pred HHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC----CCChhHHHHHHHHHH
Q 005265 393 NACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV----ERDWVSWNAMIVGCA 468 (705)
Q Consensus 393 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 468 (705)
.+|++.|+++.|.+++..|.+.|+ .|+..+|++|+.+|+++|++++|.++|++|. .||..+||+||.+|+
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~------~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~ 730 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGI------KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777777777777777777666 6677777777777777777777777777663 466777777777777
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH----hc---
Q 005265 469 QNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLG----RA--- 541 (705)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~--- 541 (705)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++++.+|. ++
T Consensus 731 k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l 809 (1060)
T PLN03218 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACAL 809 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 77777777777777777777777777777777777777777777777777544 67777777777665432 11
Q ss_pred ----------------CChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCCchHHHHH
Q 005265 542 ----------------GCLDEAKTLIEAM---PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI-EPSNSGPYVLLS 601 (705)
Q Consensus 542 ----------------g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~ 601 (705)
+..++|..+|++| ++.||..||+.++.++...+..+.+..+++.+... .+.+..+|..|+
T Consensus 810 ~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li 889 (1060)
T PLN03218 810 GEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLV 889 (1060)
T ss_pred hhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHH
Confidence 2346799999999 78999999999998887888888888888776533 556677899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 005265 602 NMYAELGRWGEVVRVRKLMRKRGVVKQPG 630 (705)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 630 (705)
+.+.+. .++|..++++|...|+.|+..
T Consensus 890 ~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 890 DGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 987432 368999999999999988764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-66 Score=570.46 Aligned_cols=472 Identities=25% Similarity=0.439 Sum_probs=450.2
Q ss_pred CCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcC-CCCchhhHHHHHHHHHccCChhhHHHHHhccCC----CChhhHH
Q 005265 15 AFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQ-FASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN----KNVFTWN 89 (705)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 89 (705)
..++..+++.+|..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.. ||+.+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566789999999999999999999999998865 789999999999999999999999999999864 8999999
Q ss_pred HHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHH
Q 005265 90 SIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKM 169 (705)
Q Consensus 90 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 169 (705)
.|+.+|++.|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 005265 170 GTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIE 249 (705)
Q Consensus 170 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 249 (705)
+.+++..+.+.|+.||..+||+|+++|+++|++++|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHH
Q 005265 250 PDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGY 329 (705)
Q Consensus 250 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 329 (705)
||..||++++.+|++.|+++.|.+++..+.+.| ++||..++++|+++|+++|++++|.
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-~~~d~~~~~~Li~~y~k~G~~~~A~--------------------- 380 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDAR--------------------- 380 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-CCCCeeehHHHHHHHHHCCCHHHHH---------------------
Confidence 999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHH
Q 005265 330 AKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHT 409 (705)
Q Consensus 330 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 409 (705)
++|++|.++|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+
T Consensus 381 ----------~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~ 450 (697)
T PLN03081 381 ----------NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450 (697)
T ss_pred ----------HHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 6666677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-hCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 005265 410 HVVK-HGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV-ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCG 487 (705)
Q Consensus 410 ~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 487 (705)
.|.+ .|+ .|+..+|++++++|++.|++++|.+++++|. .|+..+|++|+.+|..+|+.+.|..+++++.+
T Consensus 451 ~m~~~~g~------~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~-- 522 (697)
T PLN03081 451 SMSENHRI------KPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG-- 522 (697)
T ss_pred HHHHhcCC------CCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--
Confidence 9986 588 8999999999999999999999999999997 68999999999999999999999999999976
Q ss_pred CCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 005265 488 EKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL 527 (705)
Q Consensus 488 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 527 (705)
+.|+ ..+|..++..|++.|++++|.++++.|.+. |+...
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~ 562 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMH 562 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccC
Confidence 6676 469999999999999999999999999655 77543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.7e-34 Score=335.06 Aligned_cols=580 Identities=14% Similarity=0.076 Sum_probs=377.7
Q ss_pred HHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC---CChhhHHHHHHHHHhcCChhH
Q 005265 27 DSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN---KNVFTWNSIITGLLKWGFIDD 103 (705)
Q Consensus 27 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 103 (705)
..+...|+++.|...++.+.+.+. .+...+..+...+...|++++|...|++..+ .+...+..+...+.+.|++++
T Consensus 269 ~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 347 (899)
T TIGR02917 269 LVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDE 347 (899)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHH
Confidence 334456777777777777776552 2233344455566677777777777777653 234556666677777777777
Q ss_pred HHHHHhcCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHc
Q 005265 104 ASRLFASMPE---RDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKS 180 (705)
Q Consensus 104 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 180 (705)
|...++.+.+ .+...|..+...+.+.|++++|..+|+++.+..+ .+...+..+...+...|+++.|...++.+.+.
T Consensus 348 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 348 AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 7777776653 2445667777777777777777777777766532 24455666666667777777777777777665
Q ss_pred CCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 005265 181 RYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLAS 257 (705)
Q Consensus 181 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 257 (705)
... .......++..|.+.|++++|.++++.+.. ++..+|..+...+...|++++|.+.|+++.+.. +.+...+..
T Consensus 427 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 504 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAAN 504 (899)
T ss_pred CCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHH
Confidence 432 233445566667777777777777776653 345567777777777777777777777776532 223345555
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCC
Q 005265 258 VVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPI---RNVVSETSMVSGYAKASS 334 (705)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 334 (705)
+...+...|++++|...++.+++.. +.+..++..+...+.+.|+.++|...|+++.. .+...+..++..|.+.|+
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCC
Confidence 6666667777777777777776653 44566667777777777777777777766642 234455666677777777
Q ss_pred HHHHHHHHHhcCC---CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHH
Q 005265 335 VKSARLMFTKMLE---RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHV 411 (705)
Q Consensus 335 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 411 (705)
+++|..+++.+.. .+...|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++.|...+..+
T Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777776643 344566777777777777777777777766543 234455666666677777777777777776
Q ss_pred HHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 005265 412 VKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGE 488 (705)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 488 (705)
.+.. +.+...+..++..+...|++++|..+++.+.+ .+...+..+...+...|++++|.+.|+++.. .
T Consensus 662 ~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~ 732 (899)
T TIGR02917 662 LELK-------PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--R 732 (899)
T ss_pred HhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--h
Confidence 6654 34566667777777777777777777776653 2455666666667777777777777777766 3
Q ss_pred CCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHH
Q 005265 489 KPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSL 566 (705)
Q Consensus 489 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l 566 (705)
.|+..++..+..++...|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ .. +++..+++.+
T Consensus 733 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 810 (899)
T TIGR02917 733 APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL 810 (899)
T ss_pred CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455556666666677777777777777766543 2334666666677777777777777777666 22 2355566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 567 LAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
...+...|+ .+|...++++++..|+++..+..++.++...|++++|.++++++.+.+.
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666666666 6677777777776676666666677777777777777777777666543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6e-34 Score=330.41 Aligned_cols=588 Identities=12% Similarity=0.031 Sum_probs=442.7
Q ss_pred CCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC--CC-hhhHHHHHH
Q 005265 17 LDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN--KN-VFTWNSIIT 93 (705)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~ 93 (705)
.+..++..+...+...|++++|...++.+.+... .+...+......+...|++++|...|+++.+ |+ ...+..+..
T Consensus 225 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 303 (899)
T TIGR02917 225 NNPAVLLALATILIEAGEFEEAEKHADALLKKAP-NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGA 303 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 4556677777777888888888888888877653 3334444455556677888888888887765 22 233444556
Q ss_pred HHHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHH
Q 005265 94 GLLKWGFIDDASRLFASMPE---RDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMG 170 (705)
Q Consensus 94 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 170 (705)
.+...|++++|...|+...+ .+...+..+...+.+.|++++|+..++.+.... +.+...+..+...+...|+++.|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 67778888888888877653 245567777788888888888888888887654 33566777788888888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 005265 171 TQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASG 247 (705)
Q Consensus 171 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 247 (705)
..+++.+.+... .+...+..+...+...|++++|.+.|+.+.+ .+...+..++..+.+.|++++|.++++++...
T Consensus 383 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 383 AEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 888888877642 2556677777788888888888888877654 23345666777888888888888888888764
Q ss_pred CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHH
Q 005265 248 IEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPI---RNVVSETS 324 (705)
Q Consensus 248 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 324 (705)
.+++..++..+...+...|++++|...+.++++.. +.+...+..+...+...|++++|.+.|+++.. .+..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 34556677788888888888888888888887753 45566777788888888888888888887753 35566777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccH
Q 005265 325 MVSGYAKASSVKSARLMFTKMLE---RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADL 401 (705)
Q Consensus 325 li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 401 (705)
+...+.+.|+.++|...++++.. .+...+..++..|...|++++|+.+++.+.+.. +.+..++..+..++...|++
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 78888888888888888887743 344567777888888888888888888887643 44566788888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHH
Q 005265 402 QLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALG 478 (705)
Q Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 478 (705)
+.|...+..+.+.. +.+...+..+..+|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|.+
T Consensus 618 ~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 618 NKAVSSFKKLLALQ-------PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888887765 35667777888888888888888888887653 356788888888888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CC
Q 005265 479 LFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM--PM 556 (705)
Q Consensus 479 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 556 (705)
+++.+.+.+ .++...+..+...+...|++++|.+.|+.+... .|+..++..++.++.+.|++++|.+.++++ ..
T Consensus 691 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 691 IAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888888753 334456777777888888888888888877643 466677777888888888888888888777 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 557 QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 557 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+.+...+..+...|...|++++|...|+++++..|+++.++..+++++...|+ .+|+..++++.+.
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 34566777777778888888888888888888888888888888888888888 7788888887764
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=3.9e-25 Score=256.30 Aligned_cols=583 Identities=11% Similarity=0.020 Sum_probs=405.6
Q ss_pred CchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhh----------------HHHHHHHHHccCChhhHHHHHhccC
Q 005265 18 DSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFI----------------QNRLIDVYAKCGCLYGARKVFDKMS 81 (705)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~ll~~~~~~g~~~~A~~~~~~~~ 81 (705)
|+..+..+...+.+.|+.++|.+.++++.+... .+... ...+.+.+...|++++|.+.|++..
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P-~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l 139 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP-DSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLF 139 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHc
Confidence 345555566666677777777777777766542 22211 1223345666677777777777665
Q ss_pred CC--ChhhH--HHHHHHHHhcCChhHHHHHHhcCCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCC-----
Q 005265 82 NK--NVFTW--NSIITGLLKWGFIDDASRLFASMPE--R-DQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFAL----- 149 (705)
Q Consensus 82 ~~--~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----- 149 (705)
+. +.... ..+.......|+.++|++.++++.+ | +...+..+...+...|+.++|+..++++.......
T Consensus 140 ~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~ 219 (1157)
T PRK11447 140 NGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQ 219 (1157)
T ss_pred cCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHH
Confidence 42 11111 0111111234667777777766653 2 33456666666666777777777777665432100
Q ss_pred -----------Ch---hhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC-
Q 005265 150 -----------SE---YSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE- 214 (705)
Q Consensus 150 -----------~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 214 (705)
+. ..+...+..+........+...+.........|+.. .......+...|++++|...|++..+
T Consensus 220 ~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~ 298 (1157)
T PRK11447 220 LWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRA 298 (1157)
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 00 011111111222222333444444433332222221 12334567788999999999998764
Q ss_pred -C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhHH------------HHHHHHHHccCChHHHHHHHHHHH
Q 005265 215 -R-NIVSWNSLITCYEQNGPASDALEVFVRMMASGIEP-DEVTL------------ASVVSACASLAAFKEGLQIHARLM 279 (705)
Q Consensus 215 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~------------~~ll~~~~~~~~~~~a~~~~~~~~ 279 (705)
| +...+..+...+.+.|++++|+..|++..+..... +...+ ......+.+.|++++|...+++++
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3 66789999999999999999999999998754222 11111 122345678899999999999999
Q ss_pred HcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcccHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------
Q 005265 280 RCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIR---NVVSETSMVSGYAKASSVKSARLMFTKMLERN------- 349 (705)
Q Consensus 280 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~------- 349 (705)
+.. +.+...+..+...|...|++++|++.|++.... +...+..+...|. .++.++|...++.+....
T Consensus 379 ~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 379 QVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHH
Confidence 974 556777888999999999999999999988742 4445556666664 567899999988775421
Q ss_pred -----eehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCc-chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCC
Q 005265 350 -----VVSWNALIAGYTQNGENEEALGLFRLLKRESVCP-THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEE 423 (705)
Q Consensus 350 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (705)
...+..+...+...|++++|+..|++.++.. | +...+..+...+.+.|++++|...++.+.+.. +
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-------P 526 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-------P 526 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------C
Confidence 2235566778889999999999999998754 5 44566778888999999999999999998765 3
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC----Ch---------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005265 424 SDIFVGNSLIDMYMKCGSVEDGCRIFETMVER----DW---------VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP 490 (705)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 490 (705)
.+...+..+...+...|+.++|...++.+... +. ..+..+...+...|+.++|..+++. .++
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~ 601 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPP 601 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCC
Confidence 45566666666778899999999999988642 11 1223456778899999999999872 234
Q ss_pred ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005265 491 DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLL 567 (705)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 567 (705)
+...+..+...+...|++++|+..|+.+.+. .|+ ...+..++.+|...|++++|++.++.. ...| +...+..+.
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la 678 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVA 678 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 4456778888999999999999999998754 455 888999999999999999999999987 3445 455677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCc------hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 568 AACKVHRNIMLGEYVAKKLLEIEPSNSG------PYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 568 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.++...|++++|.++++++++..|+++. .+..++.++...|++++|...+++...
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8889999999999999999998765543 566779999999999999999999863
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1e-24 Score=252.94 Aligned_cols=585 Identities=11% Similarity=0.057 Sum_probs=437.0
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC--CChhh-H----------
Q 005265 22 FAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN--KNVFT-W---------- 88 (705)
Q Consensus 22 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~-~---------- 88 (705)
.-...+.+...++.+.|.+.+.++.... +.++.++..++..+.+.|+.++|.+.+++..+ |+... +
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 4455677778899999999999998775 45788888899999999999999999999876 43221 1
Q ss_pred ------HHHHHHHHhcCChhHHHHHHhcCCCCCcccHH----HHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 005265 89 ------NSIITGLLKWGFIDDASRLFASMPERDQCSWN----SMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSAL 158 (705)
Q Consensus 89 ------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 158 (705)
..+...+.+.|++++|.+.|+...+.++.... .........|+.++|+..++++.+..+. +...+..+.
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA 188 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLA 188 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 23344688899999999999998754332221 1111223468999999999999987432 566777888
Q ss_pred HHhhCCCCcHHHHHHHHHHHHcCCCC----------------C---hhhHHHHHHHhhcCCChHHHHHHHhccCC--CCc
Q 005265 159 SACAGSVDFKMGTQVHALLSKSRYSS----------------D---VYMGSALIDMYGKCGRVSCARRVFDGMRE--RNI 217 (705)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~~~~~g~~~----------------~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 217 (705)
..+...|+.++|...++++.+..... + ...+...+..+-.....+.|...+..... .+.
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 88899999999999999987642110 0 01122222223333334555555544322 111
Q ss_pred c-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHH----
Q 005265 218 V-SWNSLITCYEQNGPASDALEVFVRMMASGIEP-DEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLG---- 291 (705)
Q Consensus 218 ~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 291 (705)
. ........+...|++++|+..|++..+. .| +...+..+...+.+.|++++|+..++++++...-.+....+
T Consensus 269 ~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 269 AFRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 1 1123456778899999999999999884 34 56778888899999999999999999999864212221111
Q ss_pred --------HHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCCHHHHHHHHHhcCCC---CeehHHHHH
Q 005265 292 --------NALVDMYAKCGKLNEARCVFDRMPI---RNVVSETSMVSGYAKASSVKSARLMFTKMLER---NVVSWNALI 357 (705)
Q Consensus 292 --------~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li 357 (705)
......+.+.|++++|...|++... .+...+..+...+...|++++|++.|++..+. +...+..+.
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2234567889999999999998863 34556777888999999999999999998653 344566666
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCc--------chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHH
Q 005265 358 AGYTQNGENEEALGLFRLLKRESVCP--------THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVG 429 (705)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m~~~g~~p--------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (705)
..|. .+++++|+.+++.+....... ....+..+...+...|++++|.+.++.+++.. +.+..++
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-------P~~~~~~ 498 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-------PGSVWLT 498 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHH
Confidence 6664 567899999988765331100 11234455667788999999999999999886 3577788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh---------hHHH
Q 005265 430 NSLIDMYMKCGSVEDGCRIFETMVE--R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV---------TMIG 497 (705)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ 497 (705)
..+...|.+.|++++|...|+++.+ | +...+..+...+...++.++|+..++++......++.. .+..
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 8999999999999999999998753 3 55566666666788999999999998865432222221 2334
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005265 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRN 575 (705)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 575 (705)
....+...|+.++|..+++. .+++...+..+...|.+.|++++|++.|++. ...| +...+..++..+...|+
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 56678899999999999872 2345667788999999999999999999988 4455 57789999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 576 IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 576 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
+++|++.++++.+..|+++..+..++.++...|++++|.++++++....
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9999999999999999999999999999999999999999999998654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.1e-22 Score=224.71 Aligned_cols=564 Identities=10% Similarity=0.001 Sum_probs=333.8
Q ss_pred cCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC--CChhhHHHHHHHHHhcCChhHHHHHH
Q 005265 31 RSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN--KNVFTWNSIITGLLKWGFIDDASRLF 108 (705)
Q Consensus 31 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~ 108 (705)
..|++++|...|++..+..... ..++..|...|.+.|++++|+..+++..+ |+-..|..++..+ ++.++|..++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 3499999999999999887444 88889999999999999999999999876 4323333333333 8888999999
Q ss_pred hcCCC--C-CcccHHHHHHH--------HHhCCChHHHHHHHHHhHhCCCCCChhhHHHH-HHHhhCCCCcHHHHHHHHH
Q 005265 109 ASMPE--R-DQCSWNSMVSG--------FAQHDRFSEALGYFVKMHSENFALSEYSFGSA-LSACAGSVDFKMGTQVHAL 176 (705)
Q Consensus 109 ~~~~~--~-~~~~~~~li~~--------~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~ 176 (705)
+++.. | +...+..+... |.+. ++|.+.++ .....+.|+....... ...|...++++.|..++..
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 98864 3 33444444444 5555 45555554 3333444555555555 8888899999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHhhc-CCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHhH
Q 005265 177 LSKSRYSSDVYMGSALIDMYGK-CGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIE-PDEVT 254 (705)
Q Consensus 177 ~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t 254 (705)
+.+.+.. +......|-.+|.. .++ +.+..++....+.+...+..+...|.+.|+.++|.++++++...... |...+
T Consensus 208 L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 208 ARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 9998644 45556666677877 466 88888877655567888889999999999999999998887654222 33333
Q ss_pred HHHH------------------------------HHHHHccCChHHHHHH-----------------------------H
Q 005265 255 LASV------------------------------VSACASLAAFKEGLQI-----------------------------H 275 (705)
Q Consensus 255 ~~~l------------------------------l~~~~~~~~~~~a~~~-----------------------------~ 275 (705)
+.-+ +..+.+.++++.+.++ +
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 365 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLA 365 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHH
Confidence 2222 2222333333333322 1
Q ss_pred HHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-C-C----cccHHHHHHHHHhcCC---HHHHHH------
Q 005265 276 ARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPI-R-N----VVSETSMVSGYAKASS---VKSARL------ 340 (705)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-~----~~~~~~li~~~~~~~~---~~~A~~------ 340 (705)
..+.+. .+-+.....-+.-...+.|+.++|.++|+..-. + + ...-+-++..|.+.+. ..++..
T Consensus 366 ~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 366 RLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 111111 122333333333444556666666666665543 1 1 1122244444444433 111111
Q ss_pred -------------------HHHhcCC---C--CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHh
Q 005265 341 -------------------MFTKMLE---R--NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACA 396 (705)
Q Consensus 341 -------------------~~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 396 (705)
.+..... + +...|..+..++.. +++++|+..+.+.... .|+......+...+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~ 520 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY 520 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH
Confidence 1111111 1 33445555555554 5666666655555543 244433333333344
Q ss_pred hcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHH---HHHHHHHHcCCh
Q 005265 397 NLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWN---AMIVGCAQNGYG 473 (705)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~ 473 (705)
..|+++.|...++.+.... |+...+..+...+.+.|++++|...++...+.++..++ .+.......|++
T Consensus 521 ~~Gr~eeAi~~~rka~~~~--------p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 521 QVEDYATALAAWQKISLHD--------MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HCCCHHHHHHHHHHHhccC--------CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCH
Confidence 6666666666666654332 22333445555666666666666666665533222222 222223334666
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHH
Q 005265 474 TEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIE 552 (705)
Q Consensus 474 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (705)
++|+..+++.++ ..|+...+..+..++.+.|++++|...++.... ..|+ ...+..+...+...|++++|++.++
T Consensus 593 ~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 593 ELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666666 455555666666666666666666666666543 3444 5556666666666666666666666
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 553 AM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 553 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+. ...| +...+..+..++...|++++|+..+++++++.|++..+....+++..+..+++.|.+-++....
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 65 3344 3455666666666666666666666666666666666666666666666666666666655443
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.5e-21 Score=190.90 Aligned_cols=377 Identities=15% Similarity=0.169 Sum_probs=303.7
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChh-HHHHH
Q 005265 217 IVSWNSLITCYEQNGPASDALEVFVRMMASGIEPD-EVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLV-LGNAL 294 (705)
Q Consensus 217 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l 294 (705)
..+|+.+...+-..|++++|+.+|+.|.+ ++|+ ...|..+..++...|+.+.|.+.|...++ +.|+.. ..+.+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~l 190 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcch
Confidence 34666677777777777777777777766 3443 34566666677777777777777777666 334433 33344
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C-CcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCe---ehHHHHHHHHHHcCChHH
Q 005265 295 VDMYAKCGKLNEARCVFDRMPI--R-NVVSETSMVSGYAKASSVKSARLMFTKMLERNV---VSWNALIAGYTQNGENEE 368 (705)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~ 368 (705)
...+...|++++|...|.+..+ | =.+.|+.|...+..+|+...|+..|++.+.-|+ ..|-.|...|...+.+++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 5555566777777777766543 2 235678888888888888888888888866544 468889999999999999
Q ss_pred HHHHHHHhhhCCCCcch-hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 005265 369 ALGLFRLLKRESVCPTH-YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCR 447 (705)
Q Consensus 369 A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 447 (705)
|+..|.+.... .|+. ..+..+...|...|.++.|...+++.++... .-+..|+.|..++...|++.+|..
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-------~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-------NFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-------CchHHHhHHHHHHHhccchHHHHH
Confidence 99999887764 5654 5677777778889999999999999998763 557899999999999999999999
Q ss_pred HHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 005265 448 IFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHG 523 (705)
Q Consensus 448 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 523 (705)
.+.+... ....+.+.|...|...|.+++|..+|....+ +.|.- ..++.+...|-++|++++|+..+++.. .
T Consensus 342 cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---r 416 (966)
T KOG4626|consen 342 CYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---R 416 (966)
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---h
Confidence 9998763 3567889999999999999999999999998 78876 489999999999999999999999876 6
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 005265 524 LAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600 (705)
Q Consensus 524 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 600 (705)
+.|+ ...|+.+...|-..|+...|++.+.+. .+.|. ....+.|.+.|...|+..+|+..|+.+++++|+.+.+|..+
T Consensus 417 I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 417 IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 8898 889999999999999999999999988 66775 55788899999999999999999999999999999999999
Q ss_pred HHHHHhcCChhH
Q 005265 601 SNMYAELGRWGE 612 (705)
Q Consensus 601 ~~~~~~~g~~~~ 612 (705)
+.++.-..+|.+
T Consensus 497 lh~lq~vcdw~D 508 (966)
T KOG4626|consen 497 LHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHhcccc
Confidence 998877666665
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=3.3e-19 Score=197.32 Aligned_cols=563 Identities=9% Similarity=-0.012 Sum_probs=402.6
Q ss_pred chhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC--CC-hhhHHHHHHH-
Q 005265 19 SSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN--KN-VFTWNSIITG- 94 (705)
Q Consensus 19 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~- 94 (705)
...+..+.+.+...|+.++|+...++..+.. +.|...+..+ ..+ +++++|..+++++.. |+ ..++..+...
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~ 152 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSE 152 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHh
Confidence 4556778899999999999999999999875 3455555444 222 999999999999875 33 3444444444
Q ss_pred -------HHhcCChhHHHHHHhcCCCCC--cccHHH-HHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhC-
Q 005265 95 -------LLKWGFIDDASRLFASMPERD--QCSWNS-MVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAG- 163 (705)
Q Consensus 95 -------~~~~g~~~~A~~~~~~~~~~~--~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 163 (705)
|.+.+...++++ .+...++ ...... +.+.|.+.|++++|+.++.++.+.++. +..-...+-.++..
T Consensus 153 ~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 153 VGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAG 229 (987)
T ss_pred hccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Confidence 777777777776 3333343 443444 489999999999999999999998644 44445666667776
Q ss_pred CCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC-----CCcchH------------------
Q 005265 164 SVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE-----RNIVSW------------------ 220 (705)
Q Consensus 164 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~------------------ 220 (705)
.++ +.+..++.. .+.-+......+...|.+.|+.+.|.+++++++. |+..+|
T Consensus 230 l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~ 304 (987)
T PRK09782 230 QLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY 304 (987)
T ss_pred hCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence 466 667666443 3345888999999999999999999999999873 211111
Q ss_pred ------------HHHHHHHHhcCChhHHHHHHHH--------HHHCCC-C------------------C-CHhHHHHHHH
Q 005265 221 ------------NSLITCYEQNGPASDALEVFVR--------MMASGI-E------------------P-DEVTLASVVS 260 (705)
Q Consensus 221 ------------~~li~~~~~~g~~~~A~~~~~~--------m~~~g~-~------------------p-~~~t~~~ll~ 260 (705)
-.++..+.+.++++-+.++..- +.-.+. . | +....-.+.-
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~ 384 (987)
T PRK09782 305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTW 384 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 1124555666666655544211 000000 0 1 2222222222
Q ss_pred HHHccCChHHHHHHHHHHHH-cCCCCCChhHHHHHHHHHHhcCC---hHHHHHHHh------------------------
Q 005265 261 ACASLAAFKEGLQIHARLMR-CEKLRNDLVLGNALVDMYAKCGK---LNEARCVFD------------------------ 312 (705)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~------------------------ 312 (705)
.....|+.++|.+++..... .+.-..+....+.|+..|.+.+. ...+..+-.
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 34567889999999998877 22223355666788899988877 333333311
Q ss_pred -hCCC---C--CcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHH--HHHcCChHHHHHHHHHhhhCCCCcc
Q 005265 313 -RMPI---R--NVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAG--YTQNGENEEALGLFRLLKRESVCPT 384 (705)
Q Consensus 313 -~~~~---~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~ 384 (705)
.... + +...|..+...+.. ++.++|...+.+.....+..++.+..+ +...|++++|...|+++... .|+
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~ 541 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMS 541 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCC
Confidence 1111 1 34456666666665 788889998877755434455555444 46899999999999997654 455
Q ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC--CCChhHHHH
Q 005265 385 HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV--ERDWVSWNA 462 (705)
Q Consensus 385 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 462 (705)
...+..+..++.+.|+++.|...+....+... .+...+..+.......|++++|...+++.. .|+...|..
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-------~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~ 614 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-------GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVA 614 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 55566677788899999999999999988753 444445455555566799999999999987 467788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 005265 463 MIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGR 540 (705)
Q Consensus 463 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 540 (705)
+...+.+.|++++|+..|++.+. ..|+.. .+..+..++...|+.++|+..++...+ ..|+ ...+..+..++..
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~---l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK---GLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999 678765 677777789999999999999998875 3565 7889999999999
Q ss_pred cCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh
Q 005265 541 AGCLDEAKTLIEAM-PMQPDA-VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRW 610 (705)
Q Consensus 541 ~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 610 (705)
.|++++|+..+++. ...|+. .+.........+..+++.+.+.+++...++|+.. +....+.++...+++
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhcccc
Confidence 99999999999998 667765 4455556667788889999999999999999876 677777777766654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=2.8e-20 Score=182.05 Aligned_cols=419 Identities=13% Similarity=0.118 Sum_probs=343.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHhccCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHcc
Q 005265 189 GSALIDMYGKCGRVSCARRVFDGMRERNI---VSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASL 265 (705)
Q Consensus 189 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 265 (705)
...|..-..+.|++..|++.-..+-..|. ...-.+-..+.+..+++....--....+. ..--..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 44555666788999999988766654322 12222233455555555554433333321 223456899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccc---HHHHHHHHHhcCCHHHHHHHH
Q 005265 266 AAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVS---ETSMVSGYAKASSVKSARLMF 342 (705)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~ 342 (705)
|+++.|++.++.+++.. +.....|..+..++...|+.+.|...|.+...-|+.. .+.+...+...|++.+|...+
T Consensus 130 g~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999999964 4567889999999999999999999998877544432 233445566789999999988
Q ss_pred HhcCCC---CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcch-hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCC
Q 005265 343 TKMLER---NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTH-YTFGNLLNACANLADLQLGRQAHTHVVKHGLRF 418 (705)
Q Consensus 343 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 418 (705)
.+.++. -.+.|..|...+...|+...|+..|++..+. .|+. ..|..+-..+...+.++.|...+..+....
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--- 282 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR--- 282 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC---
Confidence 887653 3478999999999999999999999999874 4543 467788888888899999999988887665
Q ss_pred CCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hh
Q 005265 419 LSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VT 494 (705)
Q Consensus 419 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~ 494 (705)
+....++..+...|...|.++-|+..+++..+ | =...|+.|..++-..|++.+|...|.+.+. +.|+. ..
T Consensus 283 ----pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hada 356 (966)
T KOG4626|consen 283 ----PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADA 356 (966)
T ss_pred ----CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHH
Confidence 45677888888999999999999999999874 4 356899999999999999999999999998 77876 48
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACK 571 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 571 (705)
.+.+...+...|.+++|..+|.... .+.|. ....+.|...|-..|++++|+..|++. .++|+ ..+++.+...|.
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHH
Confidence 8999999999999999999999665 56788 778999999999999999999999998 78887 558899999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 572 VHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 572 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
..|+.+.|.+.+.+++.++|.-..++..|+.+|-..|+..+|+.-++...+..
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999988643
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.3e-18 Score=189.75 Aligned_cols=417 Identities=14% Similarity=0.075 Sum_probs=288.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHhccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHcc
Q 005265 189 GSALIDMYGKCGRVSCARRVFDGMRE--RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPD-EVTLASVVSACASL 265 (705)
Q Consensus 189 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 265 (705)
+......|.+.|+++.|++.|++..+ |+...|..+..+|.+.|++++|++.++...+. .|+ ...+..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 44556677778888888888877653 66667777777888888888888888887764 343 44666677777788
Q ss_pred CChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhc
Q 005265 266 AAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKM 345 (705)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 345 (705)
|++++|...+..+....++.+ .....++..+........+...++.- ..+...+..+.. |........+..-+...
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRN--EQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 888888777766655431211 11112222111111122333333221 222223332222 22211111111111111
Q ss_pred CCCCe---ehHHHHHHHH---HHcCChHHHHHHHHHhhhCC-CCcc-hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCC
Q 005265 346 LERNV---VSWNALIAGY---TQNGENEEALGLFRLLKRES-VCPT-HYTFGNLLNACANLADLQLGRQAHTHVVKHGLR 417 (705)
Q Consensus 346 ~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 417 (705)
.+.+. ..+..+...+ ...+++++|+..|++..+.+ ..|+ ...+..+...+...|+++.|...+...++..
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-- 361 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-- 361 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 11111 1122221111 23478999999999998765 3343 4456777777888999999999999998875
Q ss_pred CCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-h
Q 005265 418 FLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-V 493 (705)
Q Consensus 418 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 493 (705)
+.+...|..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++.++ +.|+. .
T Consensus 362 -----P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~ 434 (615)
T TIGR00990 362 -----PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIF 434 (615)
T ss_pred -----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHH
Confidence 35567888899999999999999999998753 3678899999999999999999999999998 56764 5
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-------H-HH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDA-------V-IW 563 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~ 563 (705)
.+..+..++...|++++|+..|+...+. .|+ ...++.+..++...|++++|++.|++. .+.|+. . .+
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 6777888899999999999999988753 454 788999999999999999999999986 444421 1 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+..+..+...|++++|...++++++++|++...+..++.++.+.|++++|.+.+++..+.
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 222222445699999999999999999999989999999999999999999999998753
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=7.2e-19 Score=182.30 Aligned_cols=267 Identities=14% Similarity=0.103 Sum_probs=206.8
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc---hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRESVCPT---HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF 427 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 427 (705)
.+|..+...+...|++++|..+++.+...+..++ ..++..+...+...|+++.|..++..+.+.. +.+..
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~ 142 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-------DFAEG 142 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-------cchHH
Confidence 4566677777777777777777777766432221 2345666777777777888877777777653 45667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCC--------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHH
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVERD--------WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGV 498 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 498 (705)
+++.++..+.+.|++++|.+.++.+.+.+ ...|..+...+...|++++|...|+++.+. .|+. ..+..+
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 220 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILL 220 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHH
Confidence 78888888888888888888888775321 123556777888899999999999999884 4553 477778
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKEHGLAPL--KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLLAACKVHRN 575 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~ 575 (705)
...+...|++++|.++++++.+. .|+ ...+..++.+|.+.|++++|...++++ ...|+...+..++..+.+.|+
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCC
Confidence 88899999999999999988653 344 466788999999999999999999987 456777777888888999999
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHh---cCChhHHHHHHHHHHhCCCccCCc
Q 005265 576 IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE---LGRWGEVVRVRKLMRKRGVVKQPG 630 (705)
Q Consensus 576 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 630 (705)
+++|..+++++++..|++.. +..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 298 ~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 298 PEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998864 5555655553 569999999999999999988885
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.3e-16 Score=165.08 Aligned_cols=539 Identities=12% Similarity=0.039 Sum_probs=379.7
Q ss_pred hhhHHHHHhccCCCChh-hHHHHHHHHH--hcCChhHHHHHHhcCCC--C--CcccHHHHHHHHHhCCChHHHHHHHHHh
Q 005265 70 LYGARKVFDKMSNKNVF-TWNSIITGLL--KWGFIDDASRLFASMPE--R--DQCSWNSMVSGFAQHDRFSEALGYFVKM 142 (705)
Q Consensus 70 ~~~A~~~~~~~~~~~~~-~~~~li~~~~--~~g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~~m 142 (705)
++.|...|....+.++. +.-.+..++. ..+++-.|+.+|..... | -+...-.+..++.+.|+.+.|+..|.+.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 57888888887663322 2223334433 45789999999988432 2 1112233446677899999999999999
Q ss_pred HhCCCCCChhhHHHHHHHhhCC---CCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCC---
Q 005265 143 HSENFALSEYSFGSALSACAGS---VDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERN--- 216 (705)
Q Consensus 143 ~~~g~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--- 216 (705)
++..+ -+..++..|--.-... ..+..+..++...-... .-++.+.+.|.+.|.-.|+++.+..+...+...+
T Consensus 226 lqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 226 LQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 88643 2333333332222222 33445555555554443 3367788888999999999999999988876532
Q ss_pred ---cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHH
Q 005265 217 ---IVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEV--TLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLG 291 (705)
Q Consensus 217 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 291 (705)
..+|-.+.++|-..|++++|...|.+..+ ..|+.+ .+..+.+.+...|+++.+...|+.+.+. .+.+..+.
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm 379 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETM 379 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHH
Confidence 23577889999999999999999987765 345554 3455778888999999999999999997 46667788
Q ss_pred HHHHHHHHhcC----ChHHHHHHHhhCCCCC---cccHHHHHHHHHhcCC------HHHHHHHHHhc-CCCCeehHHHHH
Q 005265 292 NALVDMYAKCG----KLNEARCVFDRMPIRN---VVSETSMVSGYAKASS------VKSARLMFTKM-LERNVVSWNALI 357 (705)
Q Consensus 292 ~~li~~~~~~g----~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~------~~~A~~~~~~~-~~~~~~~~~~li 357 (705)
..|...|...+ ..+.|..++.+...+. ...|-.+...+-...- +..|..++... ....+...|.+.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 88888888775 5677888887776553 3445444444443332 23344333322 235667789999
Q ss_pred HHHHHcCChHHHHHHHHHhhhC---CCCcch------hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhH
Q 005265 358 AGYTQNGENEEALGLFRLLKRE---SVCPTH------YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFV 428 (705)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 428 (705)
..+...|.+.+|...|+..... ...+|. .+--.+.......++.+.|.+++..+.+..+ .-+..
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-------~YId~ 532 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-------GYIDA 532 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-------hhHHH
Confidence 9999999999999999988754 122333 2233344556677899999999999988763 33445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHhc
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLC-GEKPDHVTMIGVLCACSH 504 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~ 504 (705)
|-.+..+.-..+...+|...+.... ..++..|+-+...+.....+.-|.+-|....+. ...+|..+...|.+.|..
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 5555544445577888999988876 457888888888999998888888877776654 223666666666665532
Q ss_pred ------------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 005265 505 ------------AGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMP--MQPDAVIWGSLLAAC 570 (705)
Q Consensus 505 ------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 570 (705)
.+..++|++.|+++.+. -+-+...-|-+.-+++..|++.+|..+|.+.. ...+..+|..+..+|
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCY 690 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHH
Confidence 34567888888877643 23347777888889999999999999999872 223566889999999
Q ss_pred HhcCCHHHHHHHHHHHHhh--CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 571 KVHRNIMLGEYVAKKLLEI--EPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
...|++..|.++|+..++. ..++..+...|+.++.+.|++.+|.+.+......
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999876 3456677889999999999999999998887754
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.6e-16 Score=162.90 Aligned_cols=552 Identities=14% Similarity=0.095 Sum_probs=305.5
Q ss_pred CCChhhHHHHHHHHHHc--CCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHH---Hh---cCChhH
Q 005265 32 SKSVSDTRRVHARIIKS--QFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGL---LK---WGFIDD 103 (705)
Q Consensus 32 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~---~g~~~~ 103 (705)
.+++..|+.+|...... ..+||+.+. +-.++.+.|+.+.|+..|+...+-|+...++++... .. ...+..
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHH
Confidence 45677777777765433 244444332 335556677777777777766664443333332211 11 123344
Q ss_pred HHHHHhcCC---CCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCC--CChhhHHHHHHHhhCCCCcHHHHHHHHHHH
Q 005265 104 ASRLFASMP---ERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFA--LSEYSFGSALSACAGSVDFKMGTQVHALLS 178 (705)
Q Consensus 104 A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 178 (705)
+..++...- ..|++..+.|...|.-.|++..++.+...+...... .-+..|..+.+++-..|+++.|...|-+..
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 444444332 236666677777777777777777776666553211 122346666666667777777777766666
Q ss_pred HcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCC
Q 005265 179 KSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNG----PASDALEVFVRMMASGIEPD 251 (705)
Q Consensus 179 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~ 251 (705)
+.....-+..+--|..+|.+.|+++.+...|+.+.+ .+..+...|...|+..+ ..+.|..++.+..+.- ..|
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d 413 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVD 413 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-ccc
Confidence 553221122333455667777777777777766653 23344555555555543 2344444444444321 234
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHH----HcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHH
Q 005265 252 EVTLASVVSACASLAAFKEGLQIHARLM----RCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVS 327 (705)
Q Consensus 252 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 327 (705)
...|..+...+-. ++...++.+|..+. ..+ -++.+.+.|.+...+...|.++.|...|......
T Consensus 414 ~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~-~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~---------- 481 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQ-TDPWASLDAYGNALDILESKG-KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK---------- 481 (1018)
T ss_pred HHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcC-CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh----------
Confidence 4455444444433 33333354444433 233 3455666666666666777777766665543311
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCe------ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHH-hhccc
Q 005265 328 GYAKASSVKSARLMFTKMLERNV------VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNAC-ANLAD 400 (705)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~ 400 (705)
+..-..++. .+--.+...+-..++++.|.+.|+...+. .|..++...-+.+. ...+.
T Consensus 482 --------------~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~ 545 (1018)
T KOG2002|consen 482 --------------LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNN 545 (1018)
T ss_pred --------------hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccC
Confidence 000000111 11112344444556666666666666654 34433222111111 22345
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC-----CChhHHHHHHHHHHH------
Q 005265 401 LQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE-----RDWVSWNAMIVGCAQ------ 469 (705)
Q Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~------ 469 (705)
..+|...+..+.... ..++.+++-+.+.|.+...+..|.+-|..+.+ +|..+.-+|.+.|.+
T Consensus 546 ~~ea~~~lk~~l~~d-------~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~ 618 (1018)
T KOG2002|consen 546 LYEASLLLKDALNID-------SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPS 618 (1018)
T ss_pred cHHHHHHHHHHHhcc-------cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccc
Confidence 556666666665544 34555566666666666666666664444431 233443344443322
Q ss_pred ------cCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 005265 470 ------NGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAG 542 (705)
Q Consensus 470 ------~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 542 (705)
.+..+.|+++|.+.++ ..| |...-+.+...++..|++.+|..+|.++.... .....+|-.+..+|..+|
T Consensus 619 rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 619 RNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHH
Confidence 2345667777777776 333 44566666667777788888888887776542 223456777777788888
Q ss_pred ChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH-------------
Q 005265 543 CLDEAKTLIEAM----PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA------------- 605 (705)
Q Consensus 543 ~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~------------- 605 (705)
++..|+++|+.. .-..+..+.+.|..++...|.+.+|.+.+..+....|.++..-.+++-+..
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t 774 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRT 774 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccccc
Confidence 888888887765 123466677777777777788888888888888777777776555554433
Q ss_pred ------hcCChhHHHHHHHHHHhCCC
Q 005265 606 ------ELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 606 ------~~g~~~~A~~~~~~~~~~~~ 625 (705)
..+..++|.++|..+..-+-
T Consensus 775 ~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 775 LEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34567788888888876543
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=4.6e-18 Score=176.25 Aligned_cols=299 Identities=13% Similarity=0.074 Sum_probs=159.1
Q ss_pred HHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCC---hhhHHHHHHHhhcCCCh
Q 005265 126 FAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSD---VYMGSALIDMYGKCGRV 202 (705)
Q Consensus 126 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~ 202 (705)
+...|++++|+..|.++.+.++ .+..++..+...+...|+++.|..+++.+.+.+..++ ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3455666666666666665432 2334555555555556666666666555554321111 12344444555555555
Q ss_pred HHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHH
Q 005265 203 SCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLM 279 (705)
Q Consensus 203 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 279 (705)
+.|.++|+++.+ .+..+++.++..+.+.|++++|.+.++.+...+..+....
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------- 178 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------- 178 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-------------------------
Confidence 555555555443 2333444445555555555555555554444321111000
Q ss_pred HcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHH
Q 005265 280 RCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAG 359 (705)
Q Consensus 280 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 359 (705)
....+..+...+.+.|++++|...|+++.+. ...+...+..+...
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------------------~p~~~~~~~~la~~ 223 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAA----------------------------DPQCVRASILLGDL 223 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH----------------------------CcCCHHHHHHHHHH
Confidence 0112233444555555555555444322210 11123345556666
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhc
Q 005265 360 YTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKC 439 (705)
Q Consensus 360 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 439 (705)
+.+.|++++|..+|+++.+.+......++..+..++...|+++.|...+..+.+.. |+...+..++..+.+.
T Consensus 224 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--------p~~~~~~~la~~~~~~ 295 (389)
T PRK11788 224 ALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--------PGADLLLALAQLLEEQ 295 (389)
T ss_pred HHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHh
Confidence 66777777777777776654322223445556666666666666666666665543 3334446677777777
Q ss_pred CCHHHHHHHHHccC--CCChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChh
Q 005265 440 GSVEDGCRIFETMV--ERDWVSWNAMIVGCAQ---NGYGTEALGLFKKMLLCGEKPDHV 493 (705)
Q Consensus 440 g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 493 (705)
|++++|..+|+++. .|+...++.++..+.. .|+..+++.++++|.+.+++|++.
T Consensus 296 g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 296 EGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 77777777776654 3566666666666554 447777777777777776666655
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=3.1e-16 Score=171.23 Aligned_cols=249 Identities=12% Similarity=0.064 Sum_probs=199.2
Q ss_pred cCCHHHHHHHHHhcCCC------CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc-hhhHHHHHHHHhhcccHHHH
Q 005265 332 ASSVKSARLMFTKMLER------NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPT-HYTFGNLLNACANLADLQLG 404 (705)
Q Consensus 332 ~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a 404 (705)
.+++++|.+.|+..... ....|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 45677788888777532 3456788888889999999999999998875 354 45777788888899999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 005265 405 RQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFK 481 (705)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 481 (705)
...+..+++.. +.+..++..+...|...|++++|...|++... .+...|..+...+.+.|++++|+..|+
T Consensus 385 ~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 385 EEDFDKALKLN-------SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999998876 46778899999999999999999999998863 356778888899999999999999999
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-h-------HHHHHHHHHHhcCChHHHHHHHH
Q 005265 482 KMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLK-D-------HYTCMVDLLGRAGCLDEAKTLIE 552 (705)
Q Consensus 482 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~ 552 (705)
+.++ ..|+ ...+..+..++...|++++|++.|+.... +.|+. . .++.....+...|++++|.++++
T Consensus 458 ~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 458 RCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9988 4565 46788888899999999999999998764 33431 1 12222334455799999999999
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 553 AM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 553 ~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
+. ...|+ ...+..+...+.+.|++++|.+.|+++.++.+...
T Consensus 533 kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 533 KALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 86 55664 45788889999999999999999999999877543
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=2.2e-16 Score=171.46 Aligned_cols=369 Identities=11% Similarity=0.001 Sum_probs=241.4
Q ss_pred cCCChHHHHHHHhccCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHH
Q 005265 198 KCGRVSCARRVFDGMRE------RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEG 271 (705)
Q Consensus 198 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 271 (705)
+..+++.-.-+|..-++ .+..-...++..+.+.|++++|..+++........+.. .+..++.++...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHH
Confidence 44555555555555443 12223445667778888888888888888775433333 333444555668888888
Q ss_pred HHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCee
Q 005265 272 LQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVV 351 (705)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 351 (705)
...++.+++.. +.+...+..+...+...|++++|...|++.... ...+..
T Consensus 96 ~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l----------------------------~P~~~~ 145 (656)
T PRK15174 96 LQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA----------------------------FSGNSQ 145 (656)
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------CCCcHH
Confidence 88888888863 555667777777888888888888666544311 112344
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHH
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNS 431 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (705)
.|..+...+...|++++|...++.+......+.. .+.. +..+...|++++|...+..+.+... .++......
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~------~~~~~~~~~ 217 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIAT-CLSFLNKSRLPEDHDLARALLPFFA------LERQESAGL 217 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCC------CcchhHHHH
Confidence 5556666666666666666666666543322111 1212 2235566667777666666655432 233334444
Q ss_pred HHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCh-hhHHHHHHHHh
Q 005265 432 LIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTE----ALGLFKKMLLCGEKPDH-VTMIGVLCACS 503 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 503 (705)
+...+...|++++|...|++... .+...+..+...+...|++++ |+..|++..+ ..|+. ..+..+...+.
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHH
Confidence 55667777777777777776653 255667777777888887775 7888888887 55664 47777888888
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHH
Q 005265 504 HAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIW-GSLLAACKVHRNIMLGE 580 (705)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~a~ 580 (705)
..|++++|...++...+. .|+ ...+..+..+|.+.|++++|+..++++ ...|+...+ ..+..++...|+.++|.
T Consensus 296 ~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHH
Confidence 888888888888887643 455 566777888888889999998888877 345655443 33455678889999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 581 YVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 581 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
..|+++++..|++.. ..+++|...+....+
T Consensus 373 ~~l~~al~~~P~~~~------------~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 373 SVFEHYIQARASHLP------------QSFEEGLLALDGQIS 402 (656)
T ss_pred HHHHHHHHhChhhch------------hhHHHHHHHHHHHHH
Confidence 999999998888642 445566666655554
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.4e-15 Score=169.02 Aligned_cols=408 Identities=11% Similarity=0.030 Sum_probs=233.8
Q ss_pred ChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHH
Q 005265 150 SEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITC 226 (705)
Q Consensus 150 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 226 (705)
+..-..-.+......|+.+.|.+++....... +.+...+..+...+.+.|++++|.++|++..+ .+...+..+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44444555555666677777776666665522 33444566667777777777777777777432 334556667777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHH
Q 005265 227 YEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNE 306 (705)
Q Consensus 227 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 306 (705)
+...|++++|+..+++..+. .|+...+..+..++...|+.++|...++++++.. +.+...+..+...+...|..+.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHH
Confidence 77777777777777777764 3332226666666777777788888877777753 4455555666777777777777
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHH-----HHcCCh---HHHHHHHHHhhh
Q 005265 307 ARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGY-----TQNGEN---EEALGLFRLLKR 378 (705)
Q Consensus 307 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~ 378 (705)
|...++.... ++. +..-+. . .....++... ...+++ ++|+..++.+.+
T Consensus 169 Al~~l~~~~~-~p~-~~~~l~-------~---------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 169 ALGAIDDANL-TPA-EKRDLE-------A---------------DAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred HHHHHHhCCC-CHH-HHHHHH-------H---------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 7766665553 111 000000 0 0001111111 112223 667777777764
Q ss_pred C-CCCcchh-hHH----HHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 005265 379 E-SVCPTHY-TFG----NLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM 452 (705)
Q Consensus 379 ~-g~~p~~~-t~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 452 (705)
. ...|+.. .+. ..+.++...+++++|...|+.+.+.+.. .|+ .....+...|...|++++|+..|+++
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~-----~P~-~a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI-----IPP-WAQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC-----CCH-HHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3 1223221 111 1123344557777777777777665420 122 12222466777777777777777776
Q ss_pred CCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCh---hhHHHHHHHHhccCcHHHH
Q 005265 453 VERD-------WVSWNAMIVGCAQNGYGTEALGLFKKMLLCG-----------EKPDH---VTMIGVLCACSHAGLVEEG 511 (705)
Q Consensus 453 ~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~g~~~~a 511 (705)
.+.+ ...+..+..++...|++++|..+++++.+.. -.|+. ..+..+...+...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 4322 2234455556777777888887777777631 01221 1233444556666677777
Q ss_pred HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005265 512 RKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLE 588 (705)
Q Consensus 512 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 588 (705)
++.++++... .|+ ...+..+..++...|+.++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++
T Consensus 379 ~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 379 EMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7666666532 233 556666666666666666666666665 34454 34444555556666666666666666666
Q ss_pred hCCCCCc
Q 005265 589 IEPSNSG 595 (705)
Q Consensus 589 ~~p~~~~ 595 (705)
..|+++.
T Consensus 456 ~~Pd~~~ 462 (765)
T PRK10049 456 REPQDPG 462 (765)
T ss_pred hCCCCHH
Confidence 6666654
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=7.5e-16 Score=171.17 Aligned_cols=396 Identities=10% Similarity=0.045 Sum_probs=261.3
Q ss_pred ChhhHHHHHHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 005265 185 DVYMGSALIDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPD-EVTLASVVS 260 (705)
Q Consensus 185 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 260 (705)
+.....-.+.+....|+.++|++++.+... .+...+..+...+...|++++|.++|++..+. .|+ ...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 334444555556667777777777766553 22234666666777777777777777776653 233 334445555
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 005265 261 ACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARL 340 (705)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 340 (705)
.+...|++++|...++++++.. +.+.. +..+..++...|+.++|...++++...+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~---------------------- 146 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA---------------------- 146 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------
Confidence 6666677777777777766653 33444 6666666666666666665554433111
Q ss_pred HHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchh------hHHHHHHHH-----hhcccH---HHHHH
Q 005265 341 MFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHY------TFGNLLNAC-----ANLADL---QLGRQ 406 (705)
Q Consensus 341 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~-----~~~~~~---~~a~~ 406 (705)
..+...+..+...+...+..++|+..++.... .|+.. ....++... ...+.+ +.|..
T Consensus 147 ------P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 147 ------PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred ------CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 11333444455566666666667666665443 22210 011111111 112233 66777
Q ss_pred HHHHHHHhCCCCCCCCCCcHh-HH-H---HHHHHHHhcCCHHHHHHHHHccCCCC---hh-HHHHHHHHHHHcCChHHHH
Q 005265 407 AHTHVVKHGLRFLSGEESDIF-VG-N---SLIDMYMKCGSVEDGCRIFETMVERD---WV-SWNAMIVGCAQNGYGTEAL 477 (705)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~-~~-~---~li~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~ 477 (705)
.++.+.+.-.. .|+.. .+ . ..+..+...|++++|+..|+.+.+.+ +. .-..+...|...|++++|+
T Consensus 218 ~~~~ll~~~~~-----~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 218 QYDALEALWHD-----NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred HHHHHHhhccc-----CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 88887754210 22221 11 1 11234457799999999999987542 11 1222567899999999999
Q ss_pred HHHHHHHHCCCCCCh-----hhHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHH
Q 005265 478 GLFKKMLLCGEKPDH-----VTMIGVLCACSHAGLVEEGRKYFSSMSKEHG----------LAPL---KDHYTCMVDLLG 539 (705)
Q Consensus 478 ~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~ 539 (705)
..|+++.+. .|.. .....+..++...|++++|.++++.+..... -.|+ ...+..+...+.
T Consensus 293 ~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 293 SILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 999998874 3332 3456666788999999999999998865411 1123 234567788999
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 005265 540 RAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVR 617 (705)
Q Consensus 540 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 617 (705)
..|++++|++.++++ ...| +...+..+...+...|++++|++.++++++++|++...+..++..+...|++++|..++
T Consensus 371 ~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999997 3344 56788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q 005265 618 KLMRKR 623 (705)
Q Consensus 618 ~~~~~~ 623 (705)
+.+.+.
T Consensus 451 ~~ll~~ 456 (765)
T PRK10049 451 DDVVAR 456 (765)
T ss_pred HHHHHh
Confidence 999864
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=5.2e-16 Score=168.65 Aligned_cols=323 Identities=11% Similarity=-0.010 Sum_probs=251.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCC
Q 005265 255 LASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASS 334 (705)
Q Consensus 255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 334 (705)
...++..+.+.|+++.|..++...+... +.+......++......|+++.|...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~------------------------ 98 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQV------------------------ 98 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHH------------------------
Confidence 3345556667777777777777777653 34444455555555566666666644
Q ss_pred HHHHHHHHHhcCC---CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHH
Q 005265 335 VKSARLMFTKMLE---RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHV 411 (705)
Q Consensus 335 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 411 (705)
|+++.. .+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...+..+
T Consensus 99 -------l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 99 -------VNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred -------HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 444422 345678888899999999999999999998752 234567778888999999999999999988
Q ss_pred HHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 005265 412 VKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER----DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCG 487 (705)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 487 (705)
..... .+...+..+. .+...|++++|...++.+.+. +...+..+...+...|++++|+..++++.+.
T Consensus 171 ~~~~P-------~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~- 241 (656)
T PRK15174 171 AQEVP-------PRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR- 241 (656)
T ss_pred HHhCC-------CCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 77654 3333443443 478899999999999987643 3334455677889999999999999999984
Q ss_pred CCCCh-hhHHHHHHHHhccCcHHH----HHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-
Q 005265 488 EKPDH-VTMIGVLCACSHAGLVEE----GRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD- 559 (705)
Q Consensus 488 ~~p~~-~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~- 559 (705)
.|+. ..+..+...+...|++++ |...|+.+.+ +.|+ ...+..+...+.+.|++++|+..+++. ...|+
T Consensus 242 -~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~ 317 (656)
T PRK15174 242 -GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL 317 (656)
T ss_pred -CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 5654 577778889999999986 7999998864 4565 788999999999999999999999988 44564
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 560 AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
...+..+..++...|++++|...++++++.+|++...+..++.++...|++++|...+++..+..
T Consensus 318 ~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 318 PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 56777788889999999999999999999999988767778999999999999999999987654
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=7e-15 Score=138.48 Aligned_cols=332 Identities=15% Similarity=0.176 Sum_probs=238.2
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHH--HccCChh-hHHHHHhccCC---CChhhHHHHHH
Q 005265 20 SPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVY--AKCGCLY-GARKVFDKMSN---KNVFTWNSIIT 93 (705)
Q Consensus 20 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~-~A~~~~~~~~~---~~~~~~~~li~ 93 (705)
.+=+.|++. ..+|...++.-+|+.|.+.|++.+..+-..|++.- .++..+. .-++.|-.|.+ .+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW----- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW----- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-----
Confidence 344555554 45678899999999999999999988877775543 3333333 33455666654 444555
Q ss_pred HHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHH
Q 005265 94 GLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQV 173 (705)
Q Consensus 94 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 173 (705)
+.|.+.+ ++-+...+...+|.+||.++|+--..+.|..++++-.....+.+..+||.+|.+-+-. ..+++
T Consensus 191 ---K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~L 260 (625)
T KOG4422|consen 191 ---KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKL 260 (625)
T ss_pred ---ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHH
Confidence 3454433 4445555667899999999999999999999999999888899999999999876533 33889
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh
Q 005265 174 HALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEV 253 (705)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 253 (705)
..+|....+.||..|+|+++++..+.|+++.|.+. |++++.+|++.|+.|...
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLs 313 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLS 313 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchh
Confidence 99999999999999999999999999999888754 466888999999999999
Q ss_pred HHHHHHHHHHccCChHH-HHHHHHHHHHc--C-CCC----CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHH
Q 005265 254 TLASVVSACASLAAFKE-GLQIHARLMRC--E-KLR----NDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSM 325 (705)
Q Consensus 254 t~~~ll~~~~~~~~~~~-a~~~~~~~~~~--~-~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 325 (705)
+|..++..+++.++..+ +..++..++.. | .++ .|...+...+..|.+..+.+-|.++-.-+...+-
T Consensus 314 Syh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N------ 387 (625)
T KOG4422|consen 314 SYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN------ 387 (625)
T ss_pred hHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc------
Confidence 99998888888777644 44444444432 1 022 2344556667777777777777765433221100
Q ss_pred HHHHHhcCCHHHHHHHHHhcC--CCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHH
Q 005265 326 VSGYAKASSVKSARLMFTKML--ERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQL 403 (705)
Q Consensus 326 i~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 403 (705)
+ +.+. ....+-|..+....|+....+.-+.+|+.|.-.-+-|+..+...++++....+.++-
T Consensus 388 ---------~-------~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ 451 (625)
T KOG4422|consen 388 ---------W-------KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEV 451 (625)
T ss_pred ---------h-------hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchh
Confidence 0 0000 012234556667777788888888888888877778888888888888888888888
Q ss_pred HHHHHHHHHHhCC
Q 005265 404 GRQAHTHVVKHGL 416 (705)
Q Consensus 404 a~~~~~~~~~~~~ 416 (705)
..+++..++..|.
T Consensus 452 ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 452 IPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHHHHHHhhh
Confidence 8888888887775
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=2.2e-14 Score=156.08 Aligned_cols=435 Identities=9% Similarity=0.025 Sum_probs=247.4
Q ss_pred HhCCChHHHHHHHHHhHhCCCCCCh--hhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHH
Q 005265 127 AQHDRFSEALGYFVKMHSENFALSE--YSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSC 204 (705)
Q Consensus 127 ~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 204 (705)
.+.|++..|+..|++..+.. |+. ..+ .++..+...|+.++|...+++.... -+........+...|...|++++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 34555555555555554432 221 122 4444444445555555555554411 01111112222334555555555
Q ss_pred HHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 005265 205 ARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRC 281 (705)
Q Consensus 205 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 281 (705)
|.++|+++.+ .+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+..++++++.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 5555555543 12333444455555555666666665555542 344444433333333334444466666666654
Q ss_pred CCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHH
Q 005265 282 EKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIR-NVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGY 360 (705)
Q Consensus 282 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 360 (705)
. +.+...+..++..+.+.|-...|.++..+-+.- +...+.-+ . .+.|.+..+-...++.
T Consensus 199 ~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~~vr~a~~~~~---------- 258 (822)
T PRK14574 199 A--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAEQVRMAVLPTR---------- 258 (822)
T ss_pred C--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHHHHhhcccccc----------
Confidence 2 444555566666666666666666555443310 00000000 0 0000011111000000
Q ss_pred HHcCC---hHHHHHHHHHhhhC-CCCcchhh-----HHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHH
Q 005265 361 TQNGE---NEEALGLFRLLKRE-SVCPTHYT-----FGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNS 431 (705)
Q Consensus 361 ~~~g~---~~~A~~~~~~m~~~-g~~p~~~t-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (705)
...++ .+.|+.-++.+... +-.|.... ..=.+-++...++...+.+.++.+...+. +....+-.+
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~------~~P~y~~~a 332 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY------KMPDYARRW 332 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC------CCCHHHHHH
Confidence 00111 24455555554431 11232211 11233456667777778888877777665 455667778
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC
Q 005265 432 LIDMYMKCGSVEDGCRIFETMVER---------DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGE-----------KPD 491 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~ 491 (705)
+.++|...+++++|..+|+.+... +......|.-+|...+++++|..+++++.+.-. .||
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 888888888888888888876432 223346778888888999999999988887311 122
Q ss_pred h--h-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 005265 492 H--V-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSL 566 (705)
Q Consensus 492 ~--~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 566 (705)
. . .+..++..+...|++.+|.+.++.+... -+-|......+.+++...|...+|++.++.. ...|+ ..+....
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 2 2 3445566788999999999999999653 3345888999999999999999999999877 45664 5566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 567 LAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
+.++...+++++|..+.+.+++..|++..
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 77788899999999999999999999975
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=2.7e-14 Score=155.40 Aligned_cols=192 Identities=10% Similarity=0.051 Sum_probs=157.4
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----CCChhhHHHHHHHH
Q 005265 432 LIDMYMKCGSVEDGCRIFETMVER----DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGE-----KPDHVTMIGVLCAC 502 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~ll~~~ 502 (705)
.+-++.+.|+..++++.|+.+... ...+-.++..+|...+++++|+.+|+.+..... .++......|.-++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 344667889999999999999843 233556788999999999999999999977431 12233357788999
Q ss_pred hccCcHHHHHHHHHHhHHhcC------------CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005265 503 SHAGLVEEGRKYFSSMSKEHG------------LAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLL 567 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~------------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 567 (705)
...+++++|..+++.+.+... ..|| ...+..++..+...|++.+|++.++++ ...| |...+..+.
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999975311 1223 344556788899999999999999998 3344 788889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 568 AACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 568 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
..+...|.+.+|+..++.+..++|++......++..+...|+|.+|..+.+.+.+.
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998777643
No 28
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.77 E-value=2.1e-14 Score=147.19 Aligned_cols=246 Identities=10% Similarity=0.031 Sum_probs=170.0
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCC
Q 005265 5 RSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKN 84 (705)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 84 (705)
.|+..++..|+.|+..||..++..|+..|+.+.|- +|..|.-...+.....++.++......++.+.++ +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 68899999999999999999999999999999999 9999999999999999999999999999988776 788
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHhc-C---CC---C-------------------CcccHHHHHHHHHhCCChHHHHHH
Q 005265 85 VFTWNSIITGLLKWGFIDDASRLFAS-M---PE---R-------------------DQCSWNSMVSGFAQHDRFSEALGY 138 (705)
Q Consensus 85 ~~~~~~li~~~~~~g~~~~A~~~~~~-~---~~---~-------------------~~~~~~~li~~~~~~~~~~~a~~~ 138 (705)
..+|+.|+.+|.+.|++.. .+..++ + .. + -...-...+....-.|-++.++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998655 222222 1 10 0 000112233344445556666666
Q ss_pred HHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCc-
Q 005265 139 FVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNI- 217 (705)
Q Consensus 139 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 217 (705)
+..+....-. . ++..+++-+.... .-.+++.+......-.|++.++..++++-.-.|+++.|..++.+|.+...
T Consensus 162 l~~~Pvsa~~-~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 162 LAKVPVSAWN-A--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HhhCCccccc-c--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 6555432111 0 1111344443322 23344444444332257888888888888888888888888888876432
Q ss_pred ---chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCC
Q 005265 218 ---VSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAA 267 (705)
Q Consensus 218 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 267 (705)
.-|-.|+-+ .++...+..+++-|.+.|+.|+..|+..-+..+...|.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 223334333 77777788888888888888888888777777666443
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=5.6e-12 Score=125.43 Aligned_cols=590 Identities=13% Similarity=0.098 Sum_probs=427.8
Q ss_pred CCchhHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC---CChhhH
Q 005265 17 LDSSPFAKLLDSCLR-----SKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN---KNVFTW 88 (705)
Q Consensus 17 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 88 (705)
.|+-.|-+=|++-.. .++...|+.++....+.. +-++..|-+-.+.=-..|++..|+.+...=.+ ++...|
T Consensus 244 vDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvW 322 (913)
T KOG0495|consen 244 VDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVW 322 (913)
T ss_pred cCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHH
Confidence 355556666665432 357788888888888776 44555555555555667888888777654322 111222
Q ss_pred ------------HHHHHH-----------HHhcCChh----HHHHHHhcCCC--C-CcccHHHHHHHHHhCCChHHHHHH
Q 005265 89 ------------NSIITG-----------LLKWGFID----DASRLFASMPE--R-DQCSWNSMVSGFAQHDRFSEALGY 138 (705)
Q Consensus 89 ------------~~li~~-----------~~~~g~~~----~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~ 138 (705)
.+++.- +++.-+++ .-.++++...+ | ++..|.. .......+.|.-+
T Consensus 323 LeaiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~daril 398 (913)
T KOG0495|consen 323 LEAIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARIL 398 (913)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHH
Confidence 222211 11221211 11223322221 2 2223333 3334455667777
Q ss_pred HHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC----
Q 005265 139 FVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE---- 214 (705)
Q Consensus 139 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 214 (705)
+.+..+. ++.+. -|.-++++...++.|+.++....+. ++.+..+|.+-...--..|+.+...++.++-..
T Consensus 399 L~rAvec-cp~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ 472 (913)
T KOG0495|consen 399 LERAVEC-CPQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQA 472 (913)
T ss_pred HHHHHHh-ccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 7776654 22222 3344556667788888888888776 566777777777667778888888877765431
Q ss_pred ----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCh
Q 005265 215 ----RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPD--EVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDL 288 (705)
Q Consensus 215 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 288 (705)
-+-..|-.=...+-..|..-.+..+.......|+.-. ..||..-...|.+.+.++-++.+|..+++. ++.+.
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~ 550 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKK 550 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchh
Confidence 2333465666667777777777778877777776543 357888888899999999999999998886 56777
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHH
Q 005265 289 VLGNALVDMYAKCGKLNEARCVFDRMPI---RNVVSETSMVSGYAKASSVKSARLMFTKMLE---RNVVSWNALIAGYTQ 362 (705)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 362 (705)
.+|...+..--..|..+.-..+|++... .....|-.....+...|++..|+.++....+ .+...|-.-+.....
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~e 630 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE 630 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc
Confidence 8888888777778899998888888763 3445667777778888999999999888754 355678888888889
Q ss_pred cCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCH
Q 005265 363 NGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSV 442 (705)
Q Consensus 363 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 442 (705)
+.+++.|..+|.+... ..|+...|.--+..---.++.++|.++++..++.- +.-...|-.+.+.+-+.+++
T Consensus 631 n~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-------p~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 631 NDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-------PDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred cccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-------CchHHHHHHHhHHHHHHHHH
Confidence 9999999999998876 45777777666666667788999999998888875 35567888899999999999
Q ss_pred HHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 443 EDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 443 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
+.|.+.|..-.+. .+..|-.+...--+.|..-.|..++++..-. .| |...|...++.-.+.|+.+.|..+..+.
T Consensus 702 e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999876643 5667888888888889999999999998874 35 4468888999999999999999999888
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 005265 519 SKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYV 598 (705)
Q Consensus 519 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 598 (705)
.++ ++.+...|..-|.+..+.++-..+.+.+++.. -|+....++...+.....++.|.+-|.++++.+|++..+|.
T Consensus 780 LQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa 855 (913)
T KOG0495|consen 780 LQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWA 855 (913)
T ss_pred HHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHH
Confidence 775 34557888888999999999888888888875 35555666777788888999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEE
Q 005265 599 LLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEI 636 (705)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 636 (705)
.+...+...|.-++-.+++.+.... .|.-|..|..+
T Consensus 856 ~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 9999999999999999999887643 34446667654
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=9.9e-13 Score=135.98 Aligned_cols=539 Identities=14% Similarity=0.054 Sum_probs=304.6
Q ss_pred ccCChhhHHHHHhccCC---CChhhHHHHHHHHHhcCChhHHHHHHh---cCCCCCcccHHHHHHHHHhCCChHHHHHHH
Q 005265 66 KCGCLYGARKVFDKMSN---KNVFTWNSIITGLLKWGFIDDASRLFA---SMPERDQCSWNSMVSGFAQHDRFSEALGYF 139 (705)
Q Consensus 66 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 139 (705)
..|++++|.+++.++.. .+...|..|...|-..|+.+++...+- .+.+.|..-|..+-....+.|++++|.-+|
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 34666666666666644 334566666666666666666665442 223345556666666666666666666666
Q ss_pred HHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHH----HHHhhcCCChHHHHHHHhccCC-
Q 005265 140 VKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSAL----IDMYGKCGRVSCARRVFDGMRE- 214 (705)
Q Consensus 140 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~~~~- 214 (705)
.+..+..+ ++....---...|-+.|+...|..-+.++.....+.|..-...+ ++.|...++-+.|.+.++....
T Consensus 231 ~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 66666532 23333334444556666666666666666665433233323222 3344455555666666665543
Q ss_pred ----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC---------------------------CCCCHhHHHHHHHHHH
Q 005265 215 ----RNIVSWNSLITCYEQNGPASDALEVFVRMMASG---------------------------IEPDEVTLASVVSACA 263 (705)
Q Consensus 215 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~~~~ 263 (705)
-+...++.++..+.+...++.|.....++.... +.++...+ -+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhh
Confidence 233456677777777777777777666665511 11222221 1111222
Q ss_pred ccCChHHHHHHHHHHHHcC-CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC----CcccHHHHHHHHHhcCCHHHH
Q 005265 264 SLAAFKEGLQIHARLMRCE-KLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIR----NVVSETSMVSGYAKASSVKSA 338 (705)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A 338 (705)
..+..+....+...+.+.. ....+...|.-+.++|...|++..|.++|..+... +...|-.+...|...|..+.|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 3333333333333334333 02233556777777778888888888777777532 445677777777777888888
Q ss_pred HHHHHhcCCCCeehHH---HHHHHHHHcCChHHHHHHHHHhhhC--------CCCcchhhHHHHHHHHhhcccHHHHHHH
Q 005265 339 RLMFTKMLERNVVSWN---ALIAGYTQNGENEEALGLFRLLKRE--------SVCPTHYTFGNLLNACANLADLQLGRQA 407 (705)
Q Consensus 339 ~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 407 (705)
...|++.+..++..++ .|...+-+.|++++|++.+..+... +..|+........+.+...|+.++-..+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8887777554443333 3445667778888888877775421 2334444444445555666666554443
Q ss_pred HHHHHHhCC----CC------------CCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHcc--------CCCChh----H
Q 005265 408 HTHVVKHGL----RF------------LSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM--------VERDWV----S 459 (705)
Q Consensus 408 ~~~~~~~~~----~~------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~----~ 459 (705)
-..++.... .+ ..+..........++.+-.+.++......-...- ..-... .
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 333332111 00 0000122222333344444444322222211111 011222 3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCh---hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHH
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLLCGE--KPDH---VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL---KDHY 531 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~ 531 (705)
+.-++.++++.+++++|+.+...+..... .++. ..-...+.++...+++..|...++.|...++...+ ...|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34567788999999999999999887532 2222 12234556777899999999999999876554433 4567
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005265 532 TCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLLAA--CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE 606 (705)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 606 (705)
++....+.+.|+-.-=.+++... ...|+..-...++.+ ....+.+.-|...+-++....|++|.+-.+++.++..
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 76666666666655444544444 333433222233333 5677889999999999999999999877777777654
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1.6e-12 Score=122.78 Aligned_cols=432 Identities=15% Similarity=0.085 Sum_probs=300.8
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhh--CCCCcHHH-HHHHHHHHHcCCCCChhhHHHH
Q 005265 116 QCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACA--GSVDFKMG-TQVHALLSKSRYSSDVYMGSAL 192 (705)
Q Consensus 116 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 192 (705)
+++=|.|+.. ..+|.+.++.-+++.|.+.|+..+...-..+++.-+ ...++.-+ .+.|-.|.+.|-.. ..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc---
Confidence 3456666654 457789999999999999998877776666555332 22233222 33444455554332 2222
Q ss_pred HHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHH
Q 005265 193 IDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGL 272 (705)
Q Consensus 193 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 272 (705)
+.|++.+ ++-+...+...+|..||.++++-...+.|.++|++......+.+..+|+.++.+-.-.. ..
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cH
Confidence 4455544 44455556678999999999999999999999999999889999999999998765443 37
Q ss_pred HHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeh
Q 005265 273 QIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVS 352 (705)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 352 (705)
++..+|.... +.||..++|+++.+..+.|+++.|.
T Consensus 259 ~Lv~EMisqk-m~Pnl~TfNalL~c~akfg~F~~ar-------------------------------------------- 293 (625)
T KOG4422|consen 259 KLVAEMISQK-MTPNLFTFNALLSCAAKFGKFEDAR-------------------------------------------- 293 (625)
T ss_pred HHHHHHHHhh-cCCchHhHHHHHHHHHHhcchHHHH--------------------------------------------
Confidence 7888888888 9999999999999999999999888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHH-HHHHHHHHHH--hCCCCCCCCCCcHhHH
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQL-GRQAHTHVVK--HGLRFLSGEESDIFVG 429 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~--~~~~~~~~~~~~~~~~ 429 (705)
..|++++.+|++.|+.|.-.+|..+|..+++.++..+ +..+...+.. .|-.+..-.+.+...+
T Consensus 294 --------------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 294 --------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred --------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 4577888999999999999999999999888887754 3333333332 1222222334566677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 005265 430 NSLIDMYMKCGSVEDGCRIFETMVER-----------DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGV 498 (705)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 498 (705)
.+.++.|.+..+.+-|.++-.-.... ...-|..+....|+....+.-+.+|+.|.-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 78888888888999888876654321 2234666778888999999999999999988888999999999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-C--------hHH-----HHHHHHh-------C-CC
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAG-C--------LDE-----AKTLIEA-------M-PM 556 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~--------~~~-----A~~~~~~-------~-~~ 556 (705)
+++....|.++-..++|..++. +|..-......-+...+++.. . +.. |..+++. + ..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 9999999999999999988843 454444444444444444433 1 100 1111111 1 12
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCCchHH---HHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 557 QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIE---PSNSGPYV---LLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 557 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
.-.....+.++-.+.+.|..++|.+++.-..+.. |..+. .+ -+.+.-.+......|..+++-|...+.
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~-lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPL-LNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2344455666666778888888888888776542 33332 33 344444556777788888888765443
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=2.6e-11 Score=120.80 Aligned_cols=454 Identities=13% Similarity=0.057 Sum_probs=284.4
Q ss_pred HhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHH----HHHcCCCCChhhHHHHHHHhhcCCCh
Q 005265 127 AQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHAL----LSKSRYSSDVYMGSALIDMYGKCGRV 202 (705)
Q Consensus 127 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~li~~~~~~g~~ 202 (705)
++..-++.|.++++...+. ++.+...|.+....--..|+.+...++.+. +...|+..+...|..=...+-+.|..
T Consensus 417 arLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 417 ARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 3333444444444444432 333444444444444444444444444332 22234444444444444444444444
Q ss_pred HHHHHHHhccCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccCChHHHHHHH
Q 005265 203 SCARRVFDGMRE------RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPD-EVTLASVVSACASLAAFKEGLQIH 275 (705)
Q Consensus 203 ~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 275 (705)
-.+..+...... .--.+|+.-...|.+.+.++-|..+|...++. -|. ...|......=-..|..+.-..++
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 444443333221 11234555555555555555555555554442 222 223333333333344555555555
Q ss_pred HHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhcCCHHHHHHHHHhc--CCCCe
Q 005265 276 ARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPI---RNVVSETSMVSGYAKASSVKSARLMFTKM--LERNV 350 (705)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~--~~~~~ 350 (705)
.+++.. .+-....+-....-+-..|++..|+.++...-+ .+...|-+-+.....+..++.|+.+|.+. ..++.
T Consensus 574 qkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 574 QKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 555554 233334444444444455555555555544432 12334445555555555566666666665 34566
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchh-hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHH
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHY-TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVG 429 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (705)
..|..-+...--.+..++|++++++.++. -|+.. .|..+-+.+.+.++++.|+..+..-.+.- +..+..|
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-------P~~ipLW 722 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-------PNSIPLW 722 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-------CCCchHH
Confidence 77777777777788899999999888764 45543 56666677788888999888887665554 4677888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 005265 430 NSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAG 506 (705)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 506 (705)
-.|...--+.|.+-.|..+|++..- .|...|-..|..-.+.|+.+.|..+..+.++. .+-+...|..-|....+.+
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcc
Confidence 9999999999999999999998763 37789999999999999999999999998884 3334457777777777777
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005265 507 LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAK 584 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (705)
+-......++ ....|+.+.-++...+....++++|.+.|++. ...|| -.+|-.+...+.++|.-+.-.+++.
T Consensus 802 rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 802 RKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred cchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6555544444 24567778888899999999999999999988 55665 4578888888999999999999999
Q ss_pred HHHhhCCCCCchHHHHH
Q 005265 585 KLLEIEPSNSGPYVLLS 601 (705)
Q Consensus 585 ~~~~~~p~~~~~~~~l~ 601 (705)
+....+|.+...|....
T Consensus 876 ~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 876 KCETAEPTHGELWQAVS 892 (913)
T ss_pred HHhccCCCCCcHHHHHh
Confidence 99999998877665543
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=7.7e-12 Score=129.55 Aligned_cols=582 Identities=12% Similarity=0.074 Sum_probs=386.8
Q ss_pred CCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccC---CCChhhHHHHHHHHHhcCChhHHHHHH
Q 005265 32 SKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMS---NKNVFTWNSIITGLLKWGFIDDASRLF 108 (705)
Q Consensus 32 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 108 (705)
.|++++|.+++.++++.. +.....|..|...|-..|+.+++...+--.. ..|...|..+-....+.|.++.|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 499999999999999876 6677789999999999999999988765542 356788999999999999999999999
Q ss_pred hcCCCCCcccHH---HHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHH----HHHhhCCCCcHHHHHHHHHHHHc-
Q 005265 109 ASMPERDQCSWN---SMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSA----LSACAGSVDFKMGTQVHALLSKS- 180 (705)
Q Consensus 109 ~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~- 180 (705)
.+..+.++.-|- .-...|-+.|+...|...|.++.+..++.|..-+..+ +..+...++-+.|.+.++.....
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 998865444444 3456788899999999999999987553344344444 44556667778888888877663
Q ss_pred CCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC--------------------------CCcchHH----HHHHHHHhc
Q 005265 181 RYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE--------------------------RNIVSWN----SLITCYEQN 230 (705)
Q Consensus 181 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~----~li~~~~~~ 230 (705)
+-..+...++.++..|.+...++.|......+.. ++..+|+ -+.-++...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 2234566788888888888888888777655432 1112222 122233444
Q ss_pred CChhHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHH
Q 005265 231 GPASDALEVFVRMMASGIEP--DEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEAR 308 (705)
Q Consensus 231 g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 308 (705)
...+....+........+.| +...|..+..++...|.+..|..++..+.... ...+..+|-.+..+|...|..+.|.
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE-GYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-cccchhhhHHHHHHHHHHhhHHHHH
Confidence 44444555555555555333 45678899999999999999999999998876 4445789999999999999999999
Q ss_pred HHHhhCCCC---CcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCee------------hHHHHHHHHHHcCChHHHHHHH
Q 005265 309 CVFDRMPIR---NVVSETSMVSGYAKASSVKSARLMFTKMLERNVV------------SWNALIAGYTQNGENEEALGLF 373 (705)
Q Consensus 309 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~A~~~~ 373 (705)
..|+.+..- +...-.+|-..+.+.|+.++|.+.+..+..||.. .--.....+.+.|+.++=+..-
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999998743 4444556677889999999999999998666522 1122345567778877755554
Q ss_pred HHhhhCC-----C-----------------CcchhhHHHHHHHHhhcccHHHHHHHHH------HHHHhCCCCCCCCCCc
Q 005265 374 RLLKRES-----V-----------------CPTHYTFGNLLNACANLADLQLGRQAHT------HVVKHGLRFLSGEESD 425 (705)
Q Consensus 374 ~~m~~~g-----~-----------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~~~~~~~~~~ 425 (705)
..|+... + +-...+...++.+-.+.++.....+... .....++. ..+
T Consensus 550 ~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls-----idd 624 (895)
T KOG2076|consen 550 STLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS-----IDD 624 (895)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc-----HHH
Confidence 4444321 1 1112222333333333333221111111 11111220 112
Q ss_pred H-hHHHHHHHHHHhcCCHHHHHHHHHccCCCC-----h----hHHHHHHHHHHHcCChHHHHHHHHHHHHC-CC--CCCh
Q 005265 426 I-FVGNSLIDMYMKCGSVEDGCRIFETMVERD-----W----VSWNAMIVGCAQNGYGTEALGLFKKMLLC-GE--KPDH 492 (705)
Q Consensus 426 ~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--~p~~ 492 (705)
. ..+.-++..+++.+++++|..+...+...+ . ..-..++.+.+..+++..|...++.|+.. +. .|..
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 2 455667889999999999999988876432 2 23345667778899999999999999875 21 3333
Q ss_pred h-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005265 493 V-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLK--DHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLLA 568 (705)
Q Consensus 493 ~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 568 (705)
. .|+..++...+.++-.--.+++..+. ...|+. ..+......+..++.+.-|+..+-+. ...||....+.+++
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLG 781 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 3 44445555555554433333333322 223332 22222233456778888888876655 34566443433333
Q ss_pred H-HH----------hcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 569 A-CK----------VHRNIMLGEYVAKKLLEIEPS--NSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 569 ~-~~----------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
. +. +|-..-.+...+.+..++... .-.++.+++.+|...|-..-|..+++++..-
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 3 21 233456677777777776433 5567899999999999999999999999853
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=5.9e-14 Score=133.13 Aligned_cols=450 Identities=13% Similarity=0.061 Sum_probs=275.8
Q ss_pred HHHHHhCCChHHHHHHHHHhHhCCCCCChhhHH-HHHHHhhCCCCcHHHHHHHHHHHHcCCCCChh----hHHHHHHHhh
Q 005265 123 VSGFAQHDRFSEALGYFVKMHSENFALSEYSFG-SALSACAGSVDFKMGTQVHALLSKSRYSSDVY----MGSALIDMYG 197 (705)
Q Consensus 123 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~ 197 (705)
..-|..+....+|+..++-+.+....|+...+. .+-..+.+.+.+..|.+++...+..-...+-. ..+.+--.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 334445556667777777766666666654432 22234455566666766666666543222222 2223333456
Q ss_pred cCCChHHHHHHHhccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHH
Q 005265 198 KCGRVSCARRVFDGMRE--RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIH 275 (705)
Q Consensus 198 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 275 (705)
+.|+++.|+..|+...+ ||..+--.|+-++..-|+.++..+.|.+|..-...||..-|. +.
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~~---------- 350 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------KE---------- 350 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------CC----------
Confidence 66777777777766543 554443333333444566666666666666543333332220 00
Q ss_pred HHHHHcCCCCCChhHHHHHH-----HHHHhcC--ChHHHHHHHhhCC----CCCcc---cH------------------H
Q 005265 276 ARLMRCEKLRNDLVLGNALV-----DMYAKCG--KLNEARCVFDRMP----IRNVV---SE------------------T 323 (705)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~li-----~~~~~~g--~~~~A~~~~~~~~----~~~~~---~~------------------~ 323 (705)
. -.|+....+.-+ .-.-+.+ +.+.++-.-.++. .++.. -| -
T Consensus 351 ------~-ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei 423 (840)
T KOG2003|consen 351 ------K-DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEI 423 (840)
T ss_pred ------c-CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhh
Confidence 0 011111111111 0111111 1111111111111 11110 00 0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHH-----HHHHHcC-ChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh
Q 005265 324 SMVSGYAKASSVKSARLMFTKMLERNVVSWNALI-----AGYTQNG-ENEEALGLFRLLKRESVCPTHYTFGNLLNACAN 397 (705)
Q Consensus 324 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 397 (705)
.-...|.++|+++.|.++++-...+|..+-.+.. .-|.+.| ++..|-.+-+..+..+ +-+....+.--+....
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFA 502 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeee
Confidence 1122377899999999998888776654433222 2233333 4555655555444322 1111111111122234
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChH
Q 005265 398 LADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGT 474 (705)
Q Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 474 (705)
.|+++.|.+.+.+.....- .-+...-.+.-.+.+.|++++|++.|-++. ..+....-.+.+.|....+..
T Consensus 503 ngd~dka~~~ykeal~nda-------sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDA-------SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred cCcHHHHHHHHHHHHcCch-------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 6899999999999886553 223333334556788999999999997764 457777778888999999999
Q ss_pred HHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHH
Q 005265 475 EALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIE 552 (705)
Q Consensus 475 ~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (705)
+|++++-+... +.|+. ..+..+...|-+.|+-.+|.+.+-.- +..-| +..+..-|..-|....-+++|+..|+
T Consensus 576 qaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 576 QAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred HHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999977766 66654 57888888999999999999877633 34444 58888888889999999999999999
Q ss_pred hC-CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 553 AM-PMQPDAVIWGSLLAAC-KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 553 ~~-~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
+. -++|+..-|..++..| ++.|++.+|..+|+..-...|.+......|+.++...|-
T Consensus 651 kaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 651 KAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 98 5789999999888875 578999999999999999999999999999999888774
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=6.2e-13 Score=127.83 Aligned_cols=213 Identities=15% Similarity=0.153 Sum_probs=176.3
Q ss_pred hcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCCh
Q 005265 397 NLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYG 473 (705)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 473 (705)
-.|+.-.+.+-|+..++... .+...|--+..+|....+.++-...|.... ..|+.+|-.-.+.+.-.+++
T Consensus 338 L~g~~~~a~~d~~~~I~l~~-------~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDP-------AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hcCCchhhhhhHHHHHhcCc-------ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHH
Confidence 35788888888998888764 344447778888999999999999998875 34777888888888888999
Q ss_pred HHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 005265 474 TEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIE 552 (705)
Q Consensus 474 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (705)
++|..=|++.++ +.|+. ..|..+..+..+.+.++++...|++..+++ +.-+++|+....++...+++++|.+.|+
T Consensus 411 e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 411 EEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 999999999998 77866 478888888889999999999999998763 3448899999999999999999999999
Q ss_pred hC-CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 553 AM-PMQPD---------AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 553 ~~-~~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
.. .+.|+ +.+--+++-. +=.+++.+|+.+++++++++|....+|..|+.+-.++|+.++|+++|++..
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 87 44444 2222223222 223899999999999999999999999999999999999999999999875
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=4.6e-14 Score=133.85 Aligned_cols=479 Identities=13% Similarity=0.094 Sum_probs=232.5
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHHHHc----CCCCchhhHHHHHHHHHccCChhhHHHHHhccCC----CChhhH-HH
Q 005265 20 SPFAKLLDSCLRSKSVSDTRRVHARIIKS----QFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN----KNVFTW-NS 90 (705)
Q Consensus 20 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~ 90 (705)
--|...|.-.-..|+-+.++--+++-... .+...-.+...|.+-|.......+|...|+-+.+ ||.... -.
T Consensus 163 ~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmn 242 (840)
T KOG2003|consen 163 GDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMN 242 (840)
T ss_pred hhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeee
Confidence 34556666666666666666555543322 2344444555566666666677777777766544 333211 23
Q ss_pred HHHHHHhcCChhHHHHHHhcCC----CCCc----ccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhh
Q 005265 91 IITGLLKWGFIDDASRLFASMP----ERDQ----CSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACA 162 (705)
Q Consensus 91 li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 162 (705)
+.+.+.+.+.+.+|++.++-.. .-+. ...+.+.-.+.+.|.++.|+..|+...+. .|+..+-..|+-.+.
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF 320 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe
Confidence 3455666677777777665432 2111 13344444566777888888888777664 456655545555555
Q ss_pred CCCCcHHHHHHHHHHHHcCCCC------------ChhhHHHHH-----HHhhcCC--ChHHHH----HHHhccCCCCcch
Q 005265 163 GSVDFKMGTQVHALLSKSRYSS------------DVYMGSALI-----DMYGKCG--RVSCAR----RVFDGMRERNIVS 219 (705)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~g~~~------------~~~~~~~li-----~~~~~~g--~~~~A~----~~~~~~~~~~~~~ 219 (705)
..|+-+..++.|..|+.....| +....|.-| .-..+.. +.++++ ++..-+..|+-..
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 6677777777777776643222 222222211 1111111 112222 1111122222111
Q ss_pred ---HHH------------------HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHH--HHHHHHHccCChHHHHHHHH
Q 005265 220 ---WNS------------------LITCYEQNGPASDALEVFVRMMASGIEPDEVTLA--SVVSACASLAAFKEGLQIHA 276 (705)
Q Consensus 220 ---~~~------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~ 276 (705)
|.. -...+.++|+++.|+++++-.....-+.-+..-+ +++..+....++..|.+.-+
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 110 1123556666666666666655432221111111 12222222334455555444
Q ss_pred HHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHH
Q 005265 277 RLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNAL 356 (705)
Q Consensus 277 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 356 (705)
..+... .-+......-.+.-...|+++.|.+.|++....|...-.++.. +
T Consensus 481 ~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn----------------------------i 530 (840)
T KOG2003|consen 481 IALNID--RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN----------------------------I 530 (840)
T ss_pred HHhccc--ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH----------------------------h
Confidence 444332 1111111111122223455555555555444433332222221 1
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHH
Q 005265 357 IAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMY 436 (705)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 436 (705)
...+-..|+.++|++.|-++... +..+...+..+.+.|....+...|.+++.+....- +.|+.+.+.|.+.|
T Consensus 531 glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sli-------p~dp~ilskl~dly 602 (840)
T KOG2003|consen 531 GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI-------PNDPAILSKLADLY 602 (840)
T ss_pred cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-------CCCHHHHHHHHHHh
Confidence 22334455555555555443221 12233344445555555555555555554443322 45556666666666
Q ss_pred HhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh-ccCcHHHHH
Q 005265 437 MKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACS-HAGLVEEGR 512 (705)
Q Consensus 437 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~ 512 (705)
-+.|+-..|.+.+-.-- .-|+.+..-|...|....-+++++.+|++..- ++|+..-|..++..|. +.|++.+|.
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHH
Confidence 66666666655543222 22444444455555556666666666666554 5666666666555443 456666666
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 005265 513 KYFSSMSKEHGLAPLKDHYTCMVDLLGRAG 542 (705)
Q Consensus 513 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 542 (705)
.+++...++ ++.+..+..-|+..+...|
T Consensus 681 d~yk~~hrk--fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 681 DLYKDIHRK--FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHh--CccchHHHHHHHHHhcccc
Confidence 666666543 3445556666666655555
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=4.8e-15 Score=145.16 Aligned_cols=257 Identities=18% Similarity=0.158 Sum_probs=113.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHH-HHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHH
Q 005265 355 ALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGN-LLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLI 433 (705)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 433 (705)
.+...+.+.|++++|++++++.......|+...|-. +...+...++.+.|...++.+...+. .++..+..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-------~~~~~~~~l~ 85 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-------ANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cccccccccc
Confidence 346677788899999998866544432354444444 44455667888999999988887764 4667777888
Q ss_pred HHHHhcCCHHHHHHHHHccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhccCcHHH
Q 005265 434 DMYMKCGSVEDGCRIFETMVE--RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCG-EKPDHVTMIGVLCACSHAGLVEE 510 (705)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~ 510 (705)
.. ...+++++|.+++....+ ++...+..++..+...++++++.++++++.... ..++...|..+...+.+.|+.++
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred cc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 77 788999999999887643 466778888899999999999999999987643 33456678888888999999999
Q ss_pred HHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005265 511 GRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMP--MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLL 587 (705)
Q Consensus 511 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 587 (705)
|.+.+++..+. .|+ ......++..+...|+.+++.++++... .++|+..|..+..++...|+.++|...++++.
T Consensus 165 A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 165 ALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 99999988764 565 7888999999999999999888887762 24466678899999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 588 EIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 588 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+..|+|+.....+++++...|+.++|.+++++...
T Consensus 242 ~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 242 KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999987653
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.4e-09 Score=104.60 Aligned_cols=542 Identities=14% Similarity=0.131 Sum_probs=337.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhC
Q 005265 87 TWNSIITGLLKWGFIDDASRLFASMPE---RDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAG 163 (705)
Q Consensus 87 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 163 (705)
.|-.....=-.++++..|..+|++... ++...|-.-+..-.++..+..|..++++....-+..|.. |--.+..--.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~ 153 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHH
Confidence 333333333445667777777776654 455566666666677777777777777776543332322 2222222334
Q ss_pred CCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccC--CCCcchHHHHHHHHHhcCChhHHHHHHH
Q 005265 164 SVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMR--ERNIVSWNSLITCYEQNGPASDALEVFV 241 (705)
Q Consensus 164 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 241 (705)
.|++..|.++|+.-.+. .|+...|++.|+.=.+-..++.|..++++.. .|++.+|--....=.++|+...|..+|+
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 57778888888877665 7788888888888888888888888888754 5888888777777778888888888887
Q ss_pred HHHHC-CC-CCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 005265 242 RMMAS-GI-EPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRND--LVLGNALVDMYAKCGKLNEARCVFDRMPIR 317 (705)
Q Consensus 242 ~m~~~-g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 317 (705)
...+. |- ..+...|++....=.+...++.|.-+|.-++.. ++.+ ...|..+...--+-|+.....+..-.
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~---- 305 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG---- 305 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhh----
Confidence 77652 10 111223333333334556777888888877776 3333 45565565555555665444322200
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHhcCCC---CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcch-------hh
Q 005265 318 NVVSETSMVSGYAKASSVKSARLMFTKMLER---NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTH-------YT 387 (705)
Q Consensus 318 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t 387 (705)
+-.--++.++.. |-.+|-..+..-...|+.+...++|++.... ++|-. ..
T Consensus 306 -------------------KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYI 365 (677)
T KOG1915|consen 306 -------------------KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYI 365 (677)
T ss_pred -------------------hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHH
Confidence 000112223332 4445666666666778888888888887754 45522 11
Q ss_pred HHHHHHHH---hhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHH----HhcCCHHHHHHHHHccC--CCChh
Q 005265 388 FGNLLNAC---ANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMY----MKCGSVEDGCRIFETMV--ERDWV 458 (705)
Q Consensus 388 ~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~~~~ 458 (705)
|.-+--+| ....+.+.++++++..++.- +....++..+=-+| .++.++..|.+++.... -|-..
T Consensus 366 YLWinYalyeEle~ed~ertr~vyq~~l~lI-------PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K 438 (677)
T KOG1915|consen 366 YLWINYALYEELEAEDVERTRQVYQACLDLI-------PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK 438 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc-------CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh
Confidence 21111111 24568888999998888742 34445555444334 46788999999998876 35667
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDL 537 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 537 (705)
++...|..-.+.++++....++++.++ ..|.. .+|......-...|+.+.|..+|.-++....+.-....|.+.|+-
T Consensus 439 lFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdF 516 (677)
T KOG1915|consen 439 LFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDF 516 (677)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhh
Confidence 788888888889999999999999998 56654 678887777788999999999999887654433345677777777
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHhh----CCCCCc-
Q 005265 538 LGRAGCLDEAKTLIEAM-PMQPDAVIWGSLLAACK-----VHR-----------NIMLGEYVAKKLLEI----EPSNSG- 595 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~~~- 595 (705)
=...|.++.|..++++. ...+-..+|-++...-. +.+ +...|..+|+++... .|....
T Consensus 517 Ei~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~ 596 (677)
T KOG1915|consen 517 EIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERL 596 (677)
T ss_pred hhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78899999999999987 44455557766655532 233 567889999998764 332221
Q ss_pred -hHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCccCCcee-EEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHH
Q 005265 596 -PYVLLSNMYAELGRWGEVVRVRKLMRKR-----GVVKQPGCS-WIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMK 668 (705)
Q Consensus 596 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 668 (705)
.....-+.-...|...+...+-.+|++. .+..+.|.+ |-+. +..+...+.+.+...+++.....+.+++.
T Consensus 597 ~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKrr~~~~edG~~~~EEy---~DYiFPed~~~~~~~K~LeaA~kWK~q~~ 673 (677)
T KOG1915|consen 597 MLLEAWKNMEETFGTEGDVERVQSKMPKKVKKRRKIQREDGDTEYEEY---FDYIFPEDASATKNLKILEAAKKWKKQKA 673 (677)
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHhccHHHHhhhhhhcccCchhHHHH---HHhcCccccccCcchHHHHHHHHHHHHHH
Confidence 1223333444556666666666666432 122233422 2211 11222334455666667776666665544
Q ss_pred H
Q 005265 669 R 669 (705)
Q Consensus 669 ~ 669 (705)
+
T Consensus 674 ~ 674 (677)
T KOG1915|consen 674 K 674 (677)
T ss_pred h
Confidence 3
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=4.9e-13 Score=134.01 Aligned_cols=246 Identities=14% Similarity=0.080 Sum_probs=113.1
Q ss_pred hHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHH
Q 005265 366 NEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDG 445 (705)
Q Consensus 366 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 445 (705)
..+|+..|..... .+.-+......+-.+|...+++++++.+|+.+.+...-. -.+..+|.+.+--+-+.=.+.--
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r----v~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR----VKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccchhHHHHHHHHHHhhHHHHHH
Confidence 3445555544222 122222334444445555555555555555554432210 12344444444322221111111
Q ss_pred HHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 005265 446 CRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGL 524 (705)
Q Consensus 446 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 524 (705)
.+-+-.+....+.+|-++.++|...++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+..+ ++
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~ 484 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GV 484 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cC
Confidence 1111111223445555555555555555555555555555 444 23345544444555555555555555332 22
Q ss_pred CCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 005265 525 APL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLS 601 (705)
Q Consensus 525 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 601 (705)
.|. -..|.-|.-.|.+.++++.|+-.|+++ .+.|. .+....+...+.+.|+.++|+.++++++.++|.++-.-...+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 222 222222334455555555555555555 44443 223333333355555555555555555555555555555555
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 005265 602 NMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~ 621 (705)
.++...+++++|.+.+++++
T Consensus 565 ~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELK 584 (638)
T ss_pred HHHHhhcchHHHHHHHHHHH
Confidence 55555555555555555555
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.3e-10 Score=114.37 Aligned_cols=261 Identities=12% Similarity=0.016 Sum_probs=210.6
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhH
Q 005265 349 NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFV 428 (705)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 428 (705)
++.....-..-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+++.- |....+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-------P~~a~s 314 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-------PSKALS 314 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-------CCCCcc
Confidence 33444445566778899999999999988764 4455555555667778888777666666777665 467788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhc
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVERD---WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSH 504 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~ 504 (705)
|-++.-.|...|+.++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+ +-|.. ..+.-+.--|.+
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMR 392 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHH
Confidence 9999999999999999999999876433 45899999999999999999999988877 33332 234445556888
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-----C---CC-CHHHHHHHHHHHHhcC
Q 005265 505 AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMP-----M---QP-DAVIWGSLLAACKVHR 574 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~p-~~~~~~~l~~~~~~~g 574 (705)
.++.+.|.++|.+.. ++.|+ +.+.+-+.-..-..+.+.+|...|+..- + .+ -..+++.|..+|++.+
T Consensus 393 t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred hccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 999999999999775 67775 7888888888888999999999998761 1 11 3446888999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 575 NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 575 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+++|+..+++++.+.|.++.+|..++-+|...|+++.|...|.+..-
T Consensus 470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999874
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=6.7e-11 Score=113.42 Aligned_cols=328 Identities=12% Similarity=0.029 Sum_probs=240.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHH-HHHHHHHHc
Q 005265 285 RNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWN-ALIAGYTQN 363 (705)
Q Consensus 285 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~ 363 (705)
..|...+-...-.+-+.|..+.|+..|......-+..|.+-+....-..+.+.+..+...++..+...-. .+..++-..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 4444444444455666777888888877776655556665555444444444444444333333221111 234566666
Q ss_pred CChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHH
Q 005265 364 GENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVE 443 (705)
Q Consensus 364 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 443 (705)
.+.++++.-.......|+..+...-+....+.-...++++|..+|+++.+..+-. -.|..+|+.++-.--.+.++.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR----l~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR----LDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc----chhHHHHhHHHHHHhhhHHHH
Confidence 6888888888888888876665555555555667889999999999999875311 246677777663332222222
Q ss_pred -HHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 005265 444 -DGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKE 521 (705)
Q Consensus 444 -~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (705)
-|..++ .+.+--+.|...+.+-|+-.++.+.|...|++.++ +.|.. ..|+.+..-|....+...|.+-++.+++
T Consensus 317 ~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd- 392 (559)
T KOG1155|consen 317 YLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD- 392 (559)
T ss_pred HHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh-
Confidence 122222 22233455667778889999999999999999999 67776 4777888889999999999999998874
Q ss_pred cCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 005265 522 HGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYV 598 (705)
Q Consensus 522 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 598 (705)
+.| |-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|..+|.+.++.++|++.|.+++...--+..++.
T Consensus 393 --i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 393 --INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred --cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 455 5889999999999999999999999998 5666 7889999999999999999999999999998777778899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 005265 599 LLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.|+.+|.+.++.++|...+++-.+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999988765
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=1.7e-11 Score=125.64 Aligned_cols=274 Identities=9% Similarity=0.046 Sum_probs=180.1
Q ss_pred CCHHHHHHHHHhcCCC--Ceeh-HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHH--HHHHHHhhcccHHHHHHH
Q 005265 333 SSVKSARLMFTKMLER--NVVS-WNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFG--NLLNACANLADLQLGRQA 407 (705)
Q Consensus 333 ~~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~ 407 (705)
|+++.|++.+....+. ++.. |-.......+.|+++.|...+.++.+. .|+..... .....+...|+++.|...
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555544332 1222 222234446777888888888777653 34443322 224566677788888888
Q ss_pred HHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC---hh--------HHHHHHHHHHHcCChHHH
Q 005265 408 HTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERD---WV--------SWNAMIVGCAQNGYGTEA 476 (705)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~--------~~~~li~~~~~~g~~~~A 476 (705)
++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.. .. +|..++.......+.+..
T Consensus 176 l~~~~~~~-------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 176 VDKLLEVA-------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHhcC-------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 87777766 3567777788888888888888887777776421 11 233333333344455556
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 005265 477 LGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-P 555 (705)
Q Consensus 477 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 555 (705)
.++++.+.+. .+.+......+..++...|+.++|.+++++..+. .|+.... ++.+....++.+++++.++.. .
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHh
Confidence 6666655432 3345567777888888888888888888877642 4444222 223333558888888888877 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 556 MQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 556 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
..| |+..+..+...|...+++++|.+.|+++++..|++.. +..|+.++.+.|+.++|.+++++-..
T Consensus 323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455 4555677777888899999999999999988888744 77889999999999999888887653
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=3.2e-12 Score=128.30 Aligned_cols=275 Identities=15% Similarity=0.102 Sum_probs=219.2
Q ss_pred CHHHHHHHHHhcCCC--Ce-ehHHHHHHHHHHcCChHHHHHHHHHhhhCC--CCcchhhHHHHHHHHhhcccHHHHHHHH
Q 005265 334 SVKSARLMFTKMLER--NV-VSWNALIAGYTQNGENEEALGLFRLLKRES--VCPTHYTFGNLLNACANLADLQLGRQAH 408 (705)
Q Consensus 334 ~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 408 (705)
+..+|...|.++++. +. .....+..+|...+++++|.++|+...+.. ..-+..+|.+++--+-+.-.+ -.+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~L---s~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVAL---SYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHH---HHHH
Confidence 457788888886542 32 344567889999999999999999988643 122556777766543322111 1122
Q ss_pred HHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005265 409 THVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERD---WVSWNAMIVGCAQNGYGTEALGLFKKMLL 485 (705)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (705)
+.+++.. +..+.+|-++.++|.-+++.+.|++.|++..+-| ..+|+.+..=+.....+|.|...|+..+.
T Consensus 411 q~Li~~~-------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 411 QDLIDTD-------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHhhC-------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 3333433 5778999999999999999999999999998654 46788887788889999999999999887
Q ss_pred CCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHH
Q 005265 486 CGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAV 561 (705)
Q Consensus 486 ~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 561 (705)
+.|.. ..|-.+...|.+.++++.|.-.|+.+. .+.|. .....++...+.+.|+.++|+.+++++ ..+| |+.
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 66655 478888889999999999999999765 67786 777788889999999999999999998 4444 666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
.-..-+..+...+++++|...++++.++-|++..+|..++.+|-+.|+.+.|+.-|.-+.+.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 66667777888999999999999999999999999999999999999999999998877653
No 44
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=3.8e-10 Score=116.59 Aligned_cols=531 Identities=12% Similarity=0.042 Sum_probs=294.2
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCC----ChhhHHHHHHHHHhcCChhHHHHHHhcCCCCC
Q 005265 40 RVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNK----NVFTWNSIITGLLKWGFIDDASRLFASMPERD 115 (705)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 115 (705)
.++..+...|+.|+..+|..+|.-|+..|+.+.|- +|.-|.-+ +...++.++.+..+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888999999999999999999999999999 88887653 3467999999999999887765 788
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHH-hHh-------CCCCCChhhHHHHHHHhhCCCCcHH--------HHHHHHHHHH
Q 005265 116 QCSWNSMVSGFAQHDRFSEALGYFVK-MHS-------ENFALSEYSFGSALSACAGSVDFKM--------GTQVHALLSK 179 (705)
Q Consensus 116 ~~~~~~li~~~~~~~~~~~a~~~~~~-m~~-------~g~~p~~~~~~~ll~~~~~~~~~~~--------a~~~~~~~~~ 179 (705)
+.+|..|..+|..+|+... ++..++ |.. .|+..-..-|-..+. |+..-..+. -+.+++..++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~-c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIH-CCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcc-cCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998765 222222 221 222211111222222 221111111 1223344444
Q ss_pred cCC-CCChhhHHHH---HHHhh-cCCChHHHHHHHhccCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh
Q 005265 180 SRY-SSDVYMGSAL---IDMYG-KCGRVSCARRVFDGMRE-RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEV 253 (705)
Q Consensus 180 ~g~-~~~~~~~~~l---i~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 253 (705)
.+. .|....++.. +.-.. -...+++-........+ ++..+|.+++..-..+|+.+.|..++.+|++.|+..+.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 331 1211111111 11111 12234444444444444 889999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcC
Q 005265 254 TLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKAS 333 (705)
Q Consensus 254 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 333 (705)
-|..++-+ .++...+..+++-|.+.| +.|+..|+.-.+-.+..+|....+.. ..+....+++-+..-.-.|
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~g-v~p~seT~adyvip~l~N~~t~~~~e-----~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKG-VQPGSETQADYVIPQLSNGQTKYGEE-----GSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhc-CCCCcchhHHHHHhhhcchhhhhccc-----ccchhhhhhHHHHHHHhcc
Confidence 88888766 778888888888888888 99999998887777777555322221 1122222222222222222
Q ss_pred CHHHHHHHHHhc---------C-------CCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh
Q 005265 334 SVKSARLMFTKM---------L-------ERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACAN 397 (705)
Q Consensus 334 ~~~~A~~~~~~~---------~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 397 (705)
..|.+.++.- . ......|. ++.-...+|+-++...+...|..- ....-..-++++
T Consensus 312 --~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~np----t~r~s~~~V~a~-- 382 (1088)
T KOG4318|consen 312 --LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNP----TLRDSGQNVDAF-- 382 (1088)
T ss_pred --cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCC----ccccCcchHHHH--
Confidence 1111111111 0 01111121 111222234444444444433311 000000000000
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH--HHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHH
Q 005265 398 LADLQLGRQAHTHVVKHGLRFLSGEESDIFVGN--SLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTE 475 (705)
Q Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 475 (705)
.....+.|.++.... ...+++ ..+..........+..++.... .||.
T Consensus 383 ---~~~lrqyFrr~e~~~---------~~~i~~~~qgls~~l~se~tp~vsell~~l-rkns------------------ 431 (1088)
T KOG4318|consen 383 ---GALLRQYFRRIERHI---------CSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKNS------------------ 431 (1088)
T ss_pred ---HHHHHHHHHHHHhhH---------HHHHHHHHHHHHhhhchhhhHHHHHHHHHh-Ccch------------------
Confidence 111233333333211 111111 1111111111122222222221 1111
Q ss_pred HHHHHHHHHH----CCCCC-------ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005265 476 ALGLFKKMLL----CGEKP-------DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCL 544 (705)
Q Consensus 476 A~~~~~~m~~----~g~~p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 544 (705)
+.+-+..+.. .-..| =...-+.++..|.+.-+..+++..-+.. +..-+ ...|..||+.+.+....
T Consensus 432 ~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky-e~~lf---~g~ya~Li~l~~~hdkl 507 (1088)
T KOG4318|consen 432 FLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY-EDLLF---AGLYALLIKLMDLHDKL 507 (1088)
T ss_pred HHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh---hhHHHHHhhhHHHHHHH
Confidence 1111111000 00111 0112344555565555555555443333 22111 25789999999999999
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCCchHHHHHHHHHhcCChhHHHHH
Q 005265 545 DEAKTLIEAMP-----MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI---EPSNSGPYVLLSNMYAELGRWGEVVRV 616 (705)
Q Consensus 545 ~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~ 616 (705)
++|..+.++.. ..-|..-+..+.+...+.+....+..+++++.+. .|........+.+.....|+.+.-.++
T Consensus 508 e~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl 587 (1088)
T KOG4318|consen 508 EYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKL 587 (1088)
T ss_pred HHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHH
Confidence 99999998873 3345667778888888889888888888888764 344445566777777888999999999
Q ss_pred HHHHHhCCCccCCceeEE
Q 005265 617 RKLMRKRGVVKQPGCSWI 634 (705)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~ 634 (705)
.+-+...|+.. .|.-|.
T Consensus 588 ~d~lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 588 ADILVSLGLSE-TGPLWM 604 (1088)
T ss_pred HHHHHHhhhhh-cccceE
Confidence 88888888765 454443
No 45
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.49 E-value=9.9e-09 Score=102.69 Aligned_cols=284 Identities=14% Similarity=0.146 Sum_probs=178.3
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhcCCCCee-------hHHHHHHHHHHcCChHHHHHHHHHhhhCCCC----------
Q 005265 320 VSETSMVSGYAKASSVKSARLMFTKMLERNVV-------SWNALIAGYTQNGENEEALGLFRLLKRESVC---------- 382 (705)
Q Consensus 320 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------- 382 (705)
..|..+.+-|-..|+++.|+.+|++..+-+-. +|-.-...-.+..+++.|+++.+.....--.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 35777788888889999999999888664333 3444444445667788888877766532111
Q ss_pred c-------chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC-
Q 005265 383 P-------THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE- 454 (705)
Q Consensus 383 p-------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 454 (705)
| +...|...++.-...|-++..+.+++.+++..+ .++.+.-...-.+-...-++++.+++++-..
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-------aTPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-------ATPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 1 112233344444566788888999999998887 3444433444445556678999999998652
Q ss_pred ---CCh-hHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhhHHHHH--HHHhccCcHHHHHHHHHHhHHhcCCC
Q 005265 455 ---RDW-VSWNAMIVGCAQ---NGYGTEALGLFKKMLLCGEKPDHVTMIGVL--CACSHAGLVEEGRKYFSSMSKEHGLA 525 (705)
Q Consensus 455 ---~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~~ 525 (705)
|++ ..|+..+.-+.+ ..+.+.|..+|++.++ |.+|...-+..++ ..-..-|....|+.+++++.. +++
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~ 617 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVK 617 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCC
Confidence 444 367777666554 3468999999999999 6776654222222 222346888999999998754 455
Q ss_pred CC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHhh-CCC-CCchH
Q 005265 526 PL--KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLL---AACKVHRNIMLGEYVAKKLLEI-EPS-NSGPY 597 (705)
Q Consensus 526 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~-~p~-~~~~~ 597 (705)
+. ...|+..|.--...=-...-..+|+++ ..-||..+-...+ ..-.+.|..+.|..+|...-++ +|. +...|
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW 697 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFW 697 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHH
Confidence 54 556776664332222222233444444 2345544333222 2346789999999999988887 454 33456
Q ss_pred HHHHHHHHhcCChhHH
Q 005265 598 VLLSNMYAELGRWGEV 613 (705)
Q Consensus 598 ~~l~~~~~~~g~~~~A 613 (705)
...-..=.+.|+-+--
T Consensus 698 ~twk~FEvrHGnedT~ 713 (835)
T KOG2047|consen 698 DTWKEFEVRHGNEDTY 713 (835)
T ss_pred HHHHHHHHhcCCHHHH
Confidence 6777777788884433
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=4.1e-09 Score=101.52 Aligned_cols=459 Identities=12% Similarity=0.098 Sum_probs=315.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 005265 119 WNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGK 198 (705)
Q Consensus 119 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 198 (705)
|---..--..+++...|.++|++.+.... -+...|.--+..-.+...+..|..+++..+..-+..|..- -..+.+=-.
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW-yKY~ymEE~ 153 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW-YKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH-HHHHHHHHH
Confidence 33333334456778889999998887542 3555666666667788888889999998887643334333 334444456
Q ss_pred CCChHHHHHHHhccC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 005265 199 CGRVSCARRVFDGMR--ERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHA 276 (705)
Q Consensus 199 ~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 276 (705)
.|++..|..+|++-. +|+..+|++.|..=.+.+..+.|..+|++..- +.|+..+|.--...=-+.|....+..+|.
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 688899999998765 48888999999988888999999999988876 55888888777777778888888888888
Q ss_pred HHHHcCCC-CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCC-eehHH
Q 005265 277 RLMRCEKL-RNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERN-VVSWN 354 (705)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 354 (705)
.+++.-+- ..+...+.+....-.++..++.|.-+|+- .++.+++.. ...|.
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky---------------------------Ald~~pk~raeeL~k 284 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY---------------------------ALDHIPKGRAEELYK 284 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHhcCcccHHHHHH
Confidence 88775211 11233445555555556666666655542 122222211 11222
Q ss_pred HHHHHHHHcCCh---HHHHHH-----HHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcH
Q 005265 355 ALIAGYTQNGEN---EEALGL-----FRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDI 426 (705)
Q Consensus 355 ~li~~~~~~g~~---~~A~~~-----~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 426 (705)
.+...--+-|+. ++++-- |+.+++.+ +-|..++--.+..-...|+.+...++++.++..-. +.+.
T Consensus 285 ~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvp------p~~e 357 (677)
T KOG1915|consen 285 KYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVP------PASE 357 (677)
T ss_pred HHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCC------chhH
Confidence 222222233433 333322 33344332 34666776777777788999999999999987654 2111
Q ss_pred -hHHHHHHHH-----H---HhcCCHHHHHHHHHccCC---CChhH----HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005265 427 -FVGNSLIDM-----Y---MKCGSVEDGCRIFETMVE---RDWVS----WNAMIVGCAQNGYGTEALGLFKKMLLCGEKP 490 (705)
Q Consensus 427 -~~~~~li~~-----~---~~~g~~~~A~~~~~~~~~---~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 490 (705)
..|...|-. + ....+++.+.++|+...+ ....| |-....--.++.+...|.+++...+. ..|
T Consensus 358 kr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cP 435 (677)
T KOG1915|consen 358 KRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCP 435 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCC
Confidence 222222211 1 246788999999876643 23333 44444555678899999999988765 789
Q ss_pred ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC----CHHHHHH
Q 005265 491 DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMPMQP----DAVIWGS 565 (705)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~ 565 (705)
-..+|...|..-.+.+.++....+++... ...|. ..+|......=...|+.+.|..+|+-+-.+| -...|.+
T Consensus 436 K~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 436 KDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 99999999999999999999999999886 34565 7788888888889999999999999884455 3567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH-----hcC-----------ChhHHHHHHHHHH
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA-----ELG-----------RWGEVVRVRKLMR 621 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~ 621 (705)
.|+.-...|.++.|..+|+++++..+... +|...+..-. +.| +...|.++|+...
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 88888899999999999999999877654 6777776655 445 6667888887764
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.6e-10 Score=108.57 Aligned_cols=356 Identities=13% Similarity=0.102 Sum_probs=204.7
Q ss_pred CCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHH--HHH
Q 005265 181 RYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTL--ASV 258 (705)
Q Consensus 181 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~l 258 (705)
+...|...+-...-.+.+.|....|+..|......-+..|.+.+....-.-+.+.+..+ . .|...|...+ -.+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHH
Confidence 33445554444445566778888888888877665555555554433322222222211 1 1222222211 123
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC------cccHHHHHHHHHhc
Q 005265 259 VSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRN------VVSETSMVSGYAKA 332 (705)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~ 332 (705)
..++-.....+++.+-.......| ++.+...-+....+.....+++.|+.+|+++...| ..+|+.++-.--.+
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 445555667777877777777777 77777766667777777888888888888877543 34444443322222
Q ss_pred CCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHH
Q 005265 333 SSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVV 412 (705)
Q Consensus 333 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 412 (705)
.++.--....-.+.+-.+.|..++..-|.-.++.++|...|++.++.+ +-....++.+-.-|....+...|.+.++.++
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 222111111112222234455556666777777777777777777643 1223345555556666667777777777777
Q ss_pred HhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 005265 413 KHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEK 489 (705)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 489 (705)
+.+ +.|-..|-.|.++|.-.+.+.-|+-.|++.. ..|...|.+|..+|.+.++.++|++.|.+....|-.
T Consensus 392 di~-------p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 392 DIN-------PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred hcC-------chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 665 3566777777777777777777777776654 236667777777777777777777777776665422
Q ss_pred CChhhHHHHHHHHhccCcHHHHHHHHHHhHHhc---C-CCCC-hhHHHHHHHHHHhcCChHHHHHHH
Q 005265 490 PDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEH---G-LAPL-KDHYTCMVDLLGRAGCLDEAKTLI 551 (705)
Q Consensus 490 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 551 (705)
+...+..+...+-+.++..+|...|+.-++.. | +.|. .....-|..-+.+.+++++|....
T Consensus 465 -e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 465 -EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred -chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 44566667777777777777776666554421 1 1221 222222444455666666655443
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=3e-10 Score=117.26 Aligned_cols=145 Identities=12% Similarity=-0.029 Sum_probs=93.6
Q ss_pred HHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH---HHHHHHHhccCcHHHHHHHHH
Q 005265 443 EDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTM---IGVLCACSHAGLVEEGRKYFS 516 (705)
Q Consensus 443 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~ 516 (705)
+...+.++..+. .+...+..+...+...|+.++|.+++++..+ ..||.... ..........++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 344444555543 3777888888888889999999999998888 44555421 111122234567777777777
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 517 SMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEA--M-PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 517 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+..
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6665422222214556777777777777777777773 2 45677777767777777777777777777776553
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=9.3e-11 Score=120.29 Aligned_cols=287 Identities=15% Similarity=0.046 Sum_probs=180.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHH--HHHHHHHhcCChHHH
Q 005265 230 NGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGN--ALVDMYAKCGKLNEA 307 (705)
Q Consensus 230 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A 307 (705)
.|+++.|.+.+....+.+-.| ...|.....+..+.|+++.+...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466676666665544321111 122322333445667777777777766653 34433222 234566666777777
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhh
Q 005265 308 RCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYT 387 (705)
Q Consensus 308 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 387 (705)
...++++.+ ....++.....+...|.+.|++++|..++..+.+.+..++. .
T Consensus 173 l~~l~~~~~----------------------------~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~ 223 (398)
T PRK10747 173 RHGVDKLLE----------------------------VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-H 223 (398)
T ss_pred HHHHHHHHh----------------------------cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-H
Confidence 654433221 11234556677778888888888888888888877644322 1
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHH
Q 005265 388 FGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMI 464 (705)
Q Consensus 388 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 464 (705)
+..+- ..+|..++.......+.+...++++..+ ..++.....+.
T Consensus 224 ~~~l~---------------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A 270 (398)
T PRK10747 224 RAMLE---------------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMA 270 (398)
T ss_pred HHHHH---------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHH
Confidence 11000 0111122222222233444555555554 23667777788
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC
Q 005265 465 VGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGC 543 (705)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 543 (705)
.++...|+.++|.+++++..+ ..||... .++.+....++.+++.+..+...+. .|+ +..+.++...+.+.|+
T Consensus 271 ~~l~~~g~~~~A~~~L~~~l~--~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~ 343 (398)
T PRK10747 271 EHLIECDDHDTAQQIILDGLK--RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGE 343 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHh--cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCC
Confidence 888888888888888888887 3444422 1233444558888888888888764 344 6678888889999999
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 544 LDEAKTLIEAM-PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 544 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
+++|.+.|+.. ...|+...+..+...+.+.|+.++|.+++++.+.+
T Consensus 344 ~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 344 WQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999887 66788888888888899999999999999988775
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.3e-09 Score=107.49 Aligned_cols=503 Identities=14% Similarity=0.053 Sum_probs=271.6
Q ss_pred CchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhc--cCCCChhhHHHHHHHH
Q 005265 18 DSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDK--MSNKNVFTWNSIITGL 95 (705)
Q Consensus 18 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~ 95 (705)
+..-|..+++-+..+.++..|.-+-++....+..|+-. --+.+++.-.|.++.|..+... +.+.|..+......++
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI--YWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCL 92 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH--HHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 44556667777777778888888888877666444443 3477888888888888877654 4457777777778888
Q ss_pred HhcCChhHHHHHHhcCCC-CCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHH
Q 005265 96 LKWGFIDDASRLFASMPE-RDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVH 174 (705)
Q Consensus 96 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 174 (705)
.+..++++|..++..-+. .++..|-.-=. ...-..+.+. ++. ++...+..+-.--..+....+.++|+..+
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ar~~Y 164 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREEARDKY 164 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHHHHHHH
Confidence 888888888888874321 01111100000 0000000000 000 11111111111222344445566666666
Q ss_pred HHHHHcCCCCChhhHHHHHHHhhcC-CChHHHHHHHhccC-----CCCcchHHHHHHHH-HhcCChhHHHHHHHHHHHCC
Q 005265 175 ALLSKSRYSSDVYMGSALIDMYGKC-GRVSCARRVFDGMR-----ERNIVSWNSLITCY-EQNGPASDALEVFVRMMASG 247 (705)
Q Consensus 175 ~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~-----~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g 247 (705)
.+.+.. |...+.++...-... -..++-..+|+... ..++.....+.... ++..+ +.....-.+-.-.|
T Consensus 165 ~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~sl~~ 239 (611)
T KOG1173|consen 165 KEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNEDESLIG 239 (611)
T ss_pred HHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCchhhhhh
Confidence 666554 333333332211110 01112222332211 01111111111111 00000 00000000011123
Q ss_pred CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcccHHH
Q 005265 248 IEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMP---IRNVVSETS 324 (705)
Q Consensus 248 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 324 (705)
..-+.........-|...+++.+...+.+.+++.. ++....+..-|.++...|+...-..+=.++. .....+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhh
Confidence 34455555566666777788888888888888874 5555555555667777777665554444444 235677888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCe---ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccH
Q 005265 325 MVSGYAKASSVKSARLMFTKMLERNV---VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADL 401 (705)
Q Consensus 325 li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 401 (705)
+.--|...|+..+|++.|.+...-|. ..|-.+...|+-.|..++|+..|...-+. ++-..-.+--+---|.+.+++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 87777777888888888888755433 46888888999999999998888766542 111111122223345666777
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 005265 402 QLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFK 481 (705)
Q Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 481 (705)
+.|.+.|.++.... +.|+.+.+-+.-.....+.+.+|..+|+....+ .+
T Consensus 397 kLAe~Ff~~A~ai~-------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------ik 445 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------IK 445 (611)
T ss_pred HHHHHHHHHHHhcC-------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------hh
Confidence 77777777766655 356666666665555556666666665543210 00
Q ss_pred HHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 005265 482 KMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDA 560 (705)
Q Consensus 482 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 560 (705)
..... ..--..+++.+..+|.+.+.+++|+..++..... .+-+..++.++.-.|...|+++.|.+.|.+. .+.||.
T Consensus 446 ~~~~e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 446 SVLNE-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred hcccc-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 00000 0011234566666666666777777666665432 2334666667777777777777777777665 566766
Q ss_pred HHHHHHHHHHHh
Q 005265 561 VIWGSLLAACKV 572 (705)
Q Consensus 561 ~~~~~l~~~~~~ 572 (705)
.+...+++.+..
T Consensus 523 ~~~~~lL~~aie 534 (611)
T KOG1173|consen 523 IFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHH
Confidence 666666655443
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.41 E-value=7e-08 Score=96.81 Aligned_cols=506 Identities=13% Similarity=0.155 Sum_probs=287.2
Q ss_pred hhHHHHHHHHHccCChhhHHHHHhccCC-----CChhhHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhC
Q 005265 55 FIQNRLIDVYAKCGCLYGARKVFDKMSN-----KNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQH 129 (705)
Q Consensus 55 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 129 (705)
.+|-.-+..+.++|++...+..|+.... .....|...|...-..|-++.+.+++++..+-++..-+.-|..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455666667777777777777776543 23345777777777777777777777777766666667777777777
Q ss_pred CChHHHHHHHHHhHhCC------CCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCC--CCCh--hhHHHHHHHhhcC
Q 005265 130 DRFSEALGYFVKMHSEN------FALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRY--SSDV--YMGSALIDMYGKC 199 (705)
Q Consensus 130 ~~~~~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~--~~~~~li~~~~~~ 199 (705)
+++++|-+.+....... -+.+...|..+-...++..+.-....+ +.+++.|+ -+|. ..|++|.+-|.+.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 77777777776654321 123444555555544444333222221 22222222 2332 4567777777777
Q ss_pred CChHHHHHHHhccCC--CCcchHHHHHHHHH----------------hcCC------hhHHHHHHHHHHHCCC-------
Q 005265 200 GRVSCARRVFDGMRE--RNIVSWNSLITCYE----------------QNGP------ASDALEVFVRMMASGI------- 248 (705)
Q Consensus 200 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~----------------~~g~------~~~A~~~~~~m~~~g~------- 248 (705)
|.+++|..+|++... -.+.-|+.+-++|+ ..|+ ++-.+.-|+.+...+.
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 777777777766543 11222222222221 1111 2233334444443221
Q ss_pred ---CC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC------hhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 005265 249 ---EP-DEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRND------LVLGNALVDMYAKCGKLNEARCVFDRMPIRN 318 (705)
Q Consensus 249 ---~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 318 (705)
.| +..+|..-+. ...|+..+-...|.++++. +.|. ...|..+.+.|-..|+++.|+.+|++...-+
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 11 1222322222 2346666777777777765 2332 2356777778888888888888887776543
Q ss_pred ccc-------HHHHHHHHHhcCCHHHHHHHHHhcCC---------------------CCeehHHHHHHHHHHcCChHHHH
Q 005265 319 VVS-------ETSMVSGYAKASSVKSARLMFTKMLE---------------------RNVVSWNALIAGYTQNGENEEAL 370 (705)
Q Consensus 319 ~~~-------~~~li~~~~~~~~~~~A~~~~~~~~~---------------------~~~~~~~~li~~~~~~g~~~~A~ 370 (705)
-.+ |......-.+..+++.|.++.+.... ++...|...+..--..|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 333 33333344455667777777766511 13345666666666677788888
Q ss_pred HHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcH-hHHHHHHHHHHh---cCCHHHHH
Q 005265 371 GLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDI-FVGNSLIDMYMK---CGSVEDGC 446 (705)
Q Consensus 371 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~ 446 (705)
.+|+++.+..+.......|- ..-+....-++++.++++.-+..-. .|++ .+|+..+.-+.+ .-+++.|.
T Consensus 498 ~vYdriidLriaTPqii~Ny-AmfLEeh~yfeesFk~YErgI~LFk------~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQIIINY-AMFLEEHKYFEESFKAYERGISLFK------WPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHH-HHHHHhhHHHHHHHHHHHcCCccCC------CccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 88888887664332222221 1122344556777777766555443 4554 566665554443 23688888
Q ss_pred HHHHccCC--C--ChhH-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhccCcHHHHHHHHHHhH
Q 005265 447 RIFETMVE--R--DWVS-WNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH--VTMIGVLCACSHAGLVEEGRKYFSSMS 519 (705)
Q Consensus 447 ~~~~~~~~--~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (705)
.+|++..+ | +..+ |-.....--..|-...|+.++++.... +++.. ..|+..|.-.+..--+...+.+|++.+
T Consensus 571 dLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 571 DLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI 649 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 88887653 2 2222 222222223467778888888886553 55554 367777765555444556667777666
Q ss_pred HhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCH
Q 005265 520 KEHGLAPLKDH---YTCMVDLLGRAGCLDEAKTLIEAMP--MQP--DAVIWGSLLAACKVHRNI 576 (705)
Q Consensus 520 ~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~ 576 (705)
+. -|+... .--..++=++.|..+.|..++.-.. ..| +..-|.+.-..-.+||+-
T Consensus 650 e~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 650 ES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred Hh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 54 354332 2334456678888888888887662 233 566777777777888883
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=3.6e-10 Score=116.70 Aligned_cols=278 Identities=10% Similarity=0.033 Sum_probs=186.5
Q ss_pred cCCHHHHHHHHHhcCC--CCe-ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchh--hHHHHHHHHhhcccHHHHHH
Q 005265 332 ASSVKSARLMFTKMLE--RNV-VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHY--TFGNLLNACANLADLQLGRQ 406 (705)
Q Consensus 332 ~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~ 406 (705)
.|+++.|.+.+.+..+ |++ ..+-....+..+.|+++.|...+.+..+.. |+.. .-......+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555433 222 223334456667788888888888776542 4432 22233566677788888888
Q ss_pred HHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHH----HHHHHHHHcCChHHHHHH
Q 005265 407 AHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER---DWVSWN----AMIVGCAQNGYGTEALGL 479 (705)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~ 479 (705)
.++.+.+.. +.++.+...+...|...|++++|.+.+....+. +...+. ....++...+..+++.+.
T Consensus 175 ~l~~l~~~~-------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 175 GVDKLLEMA-------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHhC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 888888776 356677888888888888888888888877643 222221 111122333333444455
Q ss_pred HHHHHHCCC---CCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHh
Q 005265 480 FKKMLLCGE---KPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDH---YTCMVDLLGRAGCLDEAKTLIEA 553 (705)
Q Consensus 480 ~~~m~~~g~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~ 553 (705)
+..+.+... +.+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+.+.+.+++
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 655555321 126677888889999999999999999988764 455331 11122223345788888888877
Q ss_pred C-CCCCC-H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 554 M-PMQPD-A--VIWGSLLAACKVHRNIMLGEYVAK--KLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 554 ~-~~~p~-~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
. ...|+ + ....++...|.+.|++++|.+.|+ .+.+..|++.. +..++.++.+.|+.++|.+++++...
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6 34454 3 566788888999999999999999 57778887755 77999999999999999999998643
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.40 E-value=2.5e-12 Score=125.95 Aligned_cols=259 Identities=15% Similarity=0.098 Sum_probs=99.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHH-HHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcC
Q 005265 121 SMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFG-SALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKC 199 (705)
Q Consensus 121 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 199 (705)
.+...+.+.|++++|+++++.......+|+...|- .+...+...++.+.|...++.+...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34556677788888888886554443234444443 3444555677888888888888776544 55566677766 688
Q ss_pred CChHHHHHHHhccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 005265 200 GRVSCARRVFDGMRE--RNIVSWNSLITCYEQNGPASDALEVFVRMMASG-IEPDEVTLASVVSACASLAAFKEGLQIHA 276 (705)
Q Consensus 200 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 276 (705)
+++++|.++++..-+ ++...+..++..+.+.++++++.++++...... ..++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888876533 566677788888888899999999988876533 34566677777788888899999999999
Q ss_pred HHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHH
Q 005265 277 RLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNAL 356 (705)
Q Consensus 277 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 356 (705)
++++.. |.|..+.+.++..+...|+.+++..++. .+......|+..|..+
T Consensus 171 ~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~----------------------------~~~~~~~~~~~~~~~l 220 (280)
T PF13429_consen 171 KALELD--PDDPDARNALAWLLIDMGDYDEAREALK----------------------------RLLKAAPDDPDLWDAL 220 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHH----------------------------HHHHH-HTSCCHCHHH
T ss_pred HHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHH----------------------------HHHHHCcCHHHHHHHH
Confidence 998864 5567788888888888888888775553 2222234566677777
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHH
Q 005265 357 IAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVV 412 (705)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 412 (705)
..+|...|++++|+.+|++..+.. +.|..+...+..++...|+.+.|.++...+.
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 778888888888888888777643 3466677777777788888888777766554
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=2.2e-09 Score=103.88 Aligned_cols=217 Identities=10% Similarity=-0.018 Sum_probs=173.1
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhc
Q 005265 360 YTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKC 439 (705)
Q Consensus 360 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 439 (705)
+.-.|+.-.|...|+..+.....++.. |.-+...|....+.++....|..+.+.+ +.++.+|..-.+++.-.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-------p~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-------PENPDVYYHRGQMRFLL 407 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-------CCCCchhHhHHHHHHHH
Confidence 445788889999999998865444432 6667778899999999999999999988 46788888888999999
Q ss_pred CCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHH
Q 005265 440 GSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFS 516 (705)
Q Consensus 440 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 516 (705)
+++++|..-|++...- ++..|-.+.-+..+.+++++++..|++..+. ++--...|+.....+...++++.|.+.|+
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 9999999999988743 5567777777777889999999999999985 43345689999999999999999999999
Q ss_pred HhHHhcCCCCC---------hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005265 517 SMSKEHGLAPL---------KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKK 585 (705)
Q Consensus 517 ~~~~~~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (705)
.... +.|+ +.+--+++..-. .+++..|.+++++. .+.|. ...+.+|...-.++|+.++|+++|++
T Consensus 487 ~ai~---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 487 KAIE---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHh---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8763 3444 222223332223 38999999999988 66774 55788888889999999999999999
Q ss_pred HHhh
Q 005265 586 LLEI 589 (705)
Q Consensus 586 ~~~~ 589 (705)
...+
T Consensus 563 sa~l 566 (606)
T KOG0547|consen 563 SAQL 566 (606)
T ss_pred HHHH
Confidence 8876
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=1.5e-09 Score=99.62 Aligned_cols=217 Identities=15% Similarity=0.193 Sum_probs=112.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCh--hHHHHHHHHHHhcCChHHH
Q 005265 230 NGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDL--VLGNALVDMYAKCGKLNEA 307 (705)
Q Consensus 230 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A 307 (705)
+.+.++|.++|-+|.+.. +-+..+-.++-+.+-+.|..+.|+++|..++++.++..+. .....|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567788888888887631 1223344556666777778888888887777654232221 2333455556666666666
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCe---ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc
Q 005265 308 RCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNV---VSWNALIAGYTQNGENEEALGLFRLLKRESVCPT 384 (705)
Q Consensus 308 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 384 (705)
+.+| ..+.+.+. .+...|+..|-...+|++|+++-+++.+.+-.+.
T Consensus 127 E~~f-------------------------------~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 127 EDIF-------------------------------NQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred HHHH-------------------------------HHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 6444 44433222 2344566777777777777777777766554333
Q ss_pred hh----hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChh--
Q 005265 385 HY----TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWV-- 458 (705)
Q Consensus 385 ~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-- 458 (705)
.+ .|.-+........+++.|...+.+..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|+.
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQAD-------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 21 12222333333344555555555555444 233333334444444445555555444444433322
Q ss_pred --HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005265 459 --SWNAMIVGCAQNGYGTEALGLFKKMLL 485 (705)
Q Consensus 459 --~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (705)
+...|..+|.+.|+.++....+.++.+
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 233344444444444444444444444
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=3.2e-09 Score=100.67 Aligned_cols=290 Identities=15% Similarity=0.072 Sum_probs=195.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005265 230 NGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARC 309 (705)
Q Consensus 230 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 309 (705)
.|++.+|.++..+-.+.+-.|- ..|.....+.-..|+.+.+-.++.++-+.. -.++..+.-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHH
Confidence 5777777777777666553332 345555666667788888888887777753 24555666666777777777777774
Q ss_pred HHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHH
Q 005265 310 VFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFG 389 (705)
Q Consensus 310 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 389 (705)
-+. -+.+|...++........+|.+.|++.....++..|.+.|+-.++..-
T Consensus 175 ~v~----------------------------~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~- 225 (400)
T COG3071 175 NVD----------------------------QLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA- 225 (400)
T ss_pred HHH----------------------------HHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-
Confidence 432 222333456666777888888899999999999888888754443210
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHH
Q 005265 390 NLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVG 466 (705)
Q Consensus 390 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 466 (705)
.....+++.+++-....+..+.-...++..+ +.++..-.+++.-
T Consensus 226 ---------------------------------~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~ 272 (400)
T COG3071 226 ---------------------------------RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER 272 (400)
T ss_pred ---------------------------------HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence 0111233333433333333333344455544 2356666667777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDE 546 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 546 (705)
+.+.|+.++|.++..+..+.+..|+ ...+-.+.+.++...-++..+...+.++..| ..+.+|...|.+.+.|.+
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHH
Confidence 7888888888888888888777776 2233356677777777777777766654444 678888888888888888
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 547 AKTLIEAM-PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 547 A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
|.+.|+.. +..|+..+|+-+..++-+.|+..+|.++.++.+-.
T Consensus 347 A~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 347 ASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88888876 67788888888888888888888888888887754
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=5.4e-10 Score=106.76 Aligned_cols=198 Identities=13% Similarity=0.079 Sum_probs=166.6
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005265 424 SDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLC 500 (705)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 500 (705)
.....+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 4467788889999999999999999998753 356788889999999999999999999999842 223457777888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIML 578 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 578 (705)
.+...|++++|.+.++..............+..+...+...|++++|...+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999998754222233567788889999999999999999987 3344 46678888888999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 579 GEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 579 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
|...++++++..|+++..+..++.++...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888888999999999999999999888764
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=7.2e-10 Score=112.92 Aligned_cols=236 Identities=15% Similarity=0.117 Sum_probs=174.8
Q ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHccCC-------C--
Q 005265 386 YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF-VGNSLIDMYMKCGSVEDGCRIFETMVE-------R-- 455 (705)
Q Consensus 386 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 455 (705)
.|...+...|...|+++.|..++...++.-....+...|.+. ..+.+...|...+++.+|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 455556677777777777777777666541000000123333 334577899999999999999988752 1
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCCCC-hh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcC--C
Q 005265 456 --DWVSWNAMIVGCAQNGYGTEALGLFKKMLLC-----GEKPD-HV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHG--L 524 (705)
Q Consensus 456 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~ 524 (705)
-..+++.|..+|.+.|++++|...+++..+- |..+. .. .++.+...|...+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2347888888999999999999888886651 22222 22 467777789999999999999987765543 2
Q ss_pred CCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-------C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q 005265 525 APL----KDHYTCMVDLLGRAGCLDEAKTLIEAM-------P--MQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEI- 589 (705)
Q Consensus 525 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~--~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 589 (705)
.++ ..+++.|...|.+.|++++|.++++++ . ..+ ....++.+...|.+.+++.+|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 568999999999999999999999987 1 122 2457788888999999999999999988765
Q ss_pred ---CC---CCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 590 ---EP---SNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 590 ---~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
.| +...+|..|+.+|.++|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44 445578899999999999999999999886
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=2.2e-08 Score=93.03 Aligned_cols=470 Identities=13% Similarity=0.100 Sum_probs=245.7
Q ss_pred HHhcCChhHHHHHHhcCCCC----CcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHH
Q 005265 95 LLKWGFIDDASRLFASMPER----DQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMG 170 (705)
Q Consensus 95 ~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 170 (705)
+....++..|+.+++--..- ...+--.+..++.+.|++++|+..+.-+.+.. .|+...+..+.-...-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 34445555555555432210 01122234455667777888877777766643 34444444444444445666666
Q ss_pred HHHHHHHHHcCCCCChhhH-HHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 005265 171 TQVHALLSKSRYSSDVYMG-SALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIE 249 (705)
Q Consensus 171 ~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 249 (705)
+++-... |+.... ..|.+...+.++-++-..+-+.+.+. ..---+|.+.....-.+++|+++|.+.+..+
T Consensus 111 ~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 111 KSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 6654432 222233 33445555666655555444443321 1222334444444456788888888887643
Q ss_pred CCHhHHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHh--cCChHHHHHHHhhCCCCCcccHHHHH
Q 005265 250 PDEVTLASVVSA-CASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAK--CGKLNEARCVFDRMPIRNVVSETSMV 326 (705)
Q Consensus 250 p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~li 326 (705)
|+-...+.-+.. |.+..-++.+.+++.-.++. ++.+....|.......+ .|+..++. .+.+. .|...-...+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E--~k~la-dN~~~~~~f~ 256 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDE--KKELA-DNIDQEYPFI 256 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHH--HHHHH-hcccccchhH
Confidence 444444443433 34566666667777666665 44455555544433333 23332222 11111 1111111222
Q ss_pred HHHHhc-----CCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHh-----
Q 005265 327 SGYAKA-----SSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACA----- 396 (705)
Q Consensus 327 ~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----- 396 (705)
.-+++. .+-+.|.+++-.+...-+.+--.++--|.+.++..+|..+.+++.- ..|-......+..+-.
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcC
Confidence 223322 2234555555444333333334455567777777777777665532 2232222222222110
Q ss_pred hcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHH
Q 005265 397 NLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEA 476 (705)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 476 (705)
....+.-|.+.|...-.++. +.| .+..-.++.+++.-..+++++
T Consensus 335 SreHlKiAqqffqlVG~Sa~------ecD------------------------------TIpGRQsmAs~fFL~~qFddV 378 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESAL------ECD------------------------------TIPGRQSMASYFFLSFQFDDV 378 (557)
T ss_pred cHHHHHHHHHHHHHhccccc------ccc------------------------------cccchHHHHHHHHHHHHHHHH
Confidence 11122333333333322222 111 222334455555556667777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCC
Q 005265 477 LGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHY-TCMVDLLGRAGCLDEAKTLIEAMP 555 (705)
Q Consensus 477 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~ 555 (705)
+..+..+..- +.-|...-..+..+.+..|.+.+|.++|-.+... .++ +..+| ..|..+|.++|..+-|.+++-++.
T Consensus 379 l~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 379 LTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 7777766664 2333333345667778888888888888766321 222 33444 445678888888888888888886
Q ss_pred CCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 005265 556 MQPDAVIWGSLLAA-CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPG 630 (705)
Q Consensus 556 ~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 630 (705)
-..+..+...+|.- |.+.+.+--|-+.|..+..++|.... | .|+......+|+.+......|.|+
T Consensus 456 t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn-W---------eGKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 456 TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN-W---------EGKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc-c---------CCccchHHHHHHHHHcCCCCCCch
Confidence 45566666666655 88888888888888888888775432 2 356566667777666544444443
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.29 E-value=4.1e-09 Score=100.00 Aligned_cols=276 Identities=13% Similarity=0.085 Sum_probs=194.8
Q ss_pred CCHHHHHHHHHhcCCC---CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHH
Q 005265 333 SSVKSARLMFTKMLER---NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHT 409 (705)
Q Consensus 333 ~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 409 (705)
|++..|++...+-.+. ....|..-+.+--+.|+.+.+-.++.+..+.--.++.....+........|+.+.|..-..
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 4455555555554332 2233444455666778888888888887765334444455555566677788888888888
Q ss_pred HHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC-----------hhHHHHHHHHHHHcCChHHHHH
Q 005265 410 HVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERD-----------WVSWNAMIVGCAQNGYGTEALG 478 (705)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~ 478 (705)
.+.+.+ +.++.+.....++|.+.|++.....++..+.+.. ..+|+.+++-....+..+.-..
T Consensus 178 ~ll~~~-------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 178 QLLEMT-------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHhC-------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 887776 4677788888888888888888888888886542 2367777776666666666556
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CC
Q 005265 479 LFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM--PM 556 (705)
Q Consensus 479 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 556 (705)
.|+..-.. .+-+...-.+++.-+..+|+.++|.++..+..++ +..|.. ..+ -...+-++...=++..+.. ..
T Consensus 251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHH-HhhcCCCCchHHHHHHHHHHHhC
Confidence 66665543 5556666777888889999999999999888776 556651 111 2234455555444444443 12
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 557 QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 557 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+.++..+.+|..-|.+++.+.+|...++.+++..|+.. .|..++..+.+.|+..+|.+++++...
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 23447788899999999999999999999999999764 599999999999999999999998874
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=3.6e-09 Score=97.18 Aligned_cols=222 Identities=15% Similarity=0.114 Sum_probs=136.7
Q ss_pred HhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChh--------HHHHHHHH
Q 005265 395 CANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWV--------SWNAMIVG 466 (705)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~ 466 (705)
|...|-++.|+.+|..+.+.+ +.-......|+..|-+..+|++|+++-++..+-+.. .|.-+...
T Consensus 117 ym~aGl~DRAE~~f~~L~de~-------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG-------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch-------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 344455555555555555433 234445556666677777777777666655432221 24445555
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCC
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL--KDHYTCMVDLLGRAGC 543 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 543 (705)
+....+.+.|..++.+..+ ..|+.+ .-..+.+.....|+++.|.+.++.+.+. .|+ ..+...|..+|...|+
T Consensus 190 ~~~~~~~d~A~~~l~kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 190 ALASSDVDRARELLKKALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HhhhhhHHHHHHHHHHHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCC
Confidence 5566777788888888777 345443 2334445667778888888888877644 344 6667777788888888
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH---hcCChhHHHHHHHH
Q 005265 544 LDEAKTLIEAM-PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA---ELGRWGEVVRVRKL 619 (705)
Q Consensus 544 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~ 619 (705)
.++...++.++ ...+....-..+...-....-.+.|...+.+-+...|.--. +..|+.... .-|++.+....++.
T Consensus 265 ~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 265 PAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG-FHRLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred HHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH-HHHHHHhhhccccccchhhhHHHHHH
Confidence 88888877776 34444444444544444444456677777777777776544 344444432 24668888888888
Q ss_pred HHhCCCccCC
Q 005265 620 MRKRGVVKQP 629 (705)
Q Consensus 620 ~~~~~~~~~~ 629 (705)
|..+.++..|
T Consensus 344 mvge~l~~~~ 353 (389)
T COG2956 344 MVGEQLRRKP 353 (389)
T ss_pred HHHHHHhhcC
Confidence 8876666555
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.28 E-value=1.1e-07 Score=97.60 Aligned_cols=459 Identities=14% Similarity=0.105 Sum_probs=246.4
Q ss_pred hCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHh---hCCCCcHHH-------------------HH----HHHHHHHcC
Q 005265 128 QHDRFSEALGYFVKMHSENFALSEYSFGSALSAC---AGSVDFKMG-------------------TQ----VHALLSKSR 181 (705)
Q Consensus 128 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a-------------------~~----~~~~~~~~g 181 (705)
+.++.+.++.-+......+...+..++..+...+ ...++.+.+ .. .+.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 3556677777777666666666666655554432 233444433 11 111222223
Q ss_pred CCCChhhHHHHHHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-hHHHH
Q 005265 182 YSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDE-VTLAS 257 (705)
Q Consensus 182 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ 257 (705)
+..|..+|..|.-+..++|+++.+.+.|++... .....|+.+...+...|.-..|..+++.-....-.|+. ..+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 455677777777777777888888888877654 34456777777777778777777777766543323433 33333
Q ss_pred HHHHHH-ccCChHHHHHHHHHHHHcCCC---CCChhHHHHHHHHHHhc----CChHHHHHHHhhCCCCCcccHHHHHHHH
Q 005265 258 VVSACA-SLAAFKEGLQIHARLMRCEKL---RNDLVLGNALVDMYAKC----GKLNEARCVFDRMPIRNVVSETSMVSGY 329 (705)
Q Consensus 258 ll~~~~-~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~~ 329 (705)
.-..|. +.+..++++.+-.+++...+- ......|..+.-+|... ....+=.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~--------------------- 457 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERD--------------------- 457 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHH---------------------
Confidence 333443 346666676666666652111 11122333333333321 1110000
Q ss_pred HhcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHH
Q 005265 330 AKASSVKSARLMFTKMLE---RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQ 406 (705)
Q Consensus 330 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 406 (705)
....++.+.+++..+ .|+.....+.--|+..++.+.|++..++..+.+-.-+...+..+.-.+...+++..|..
T Consensus 458 ---~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 458 ---ALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred ---HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 001222233333322 12222222223344444445555555544444333344444444444444444444444
Q ss_pred HHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHH--------------------------HHHHccC----C-C
Q 005265 407 AHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGC--------------------------RIFETMV----E-R 455 (705)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~--------------------------~~~~~~~----~-~ 455 (705)
+.+.....-. .|......-++.-..-++.++|. +....+. + .
T Consensus 535 vvd~al~E~~-------~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 535 VVDAALEEFG-------DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred HHHHHHHHhh-------hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence 4443332110 00000000011111122222222 2222221 0 0
Q ss_pred C-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh--------hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 005265 456 D-WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV--------TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP 526 (705)
Q Consensus 456 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 526 (705)
+ +.++..+..-....+ ..+..-.. |...-+.|... .|......+...+..++|...+.+.. ++.|
T Consensus 608 ~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~ 681 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDP 681 (799)
T ss_pred ccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcch
Confidence 1 122222222111111 11000000 12111223221 24455567788889999988777664 3444
Q ss_pred C-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCCchHHHHH
Q 005265 527 L-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEY--VAKKLLEIEPSNSGPYVLLS 601 (705)
Q Consensus 527 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~ 601 (705)
- ...|.-....+...|++++|.+.|... -+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++.+|..|+
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 4 778888888999999999999998877 56775 6688899999999999988888 99999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 005265 602 NMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
.++.+.|+.+.|.+.|.....-
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhh
Confidence 9999999999999999988754
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.5e-08 Score=92.38 Aligned_cols=265 Identities=11% Similarity=0.004 Sum_probs=181.1
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHH---HHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHH
Q 005265 318 NVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNAL---IAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNA 394 (705)
Q Consensus 318 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 394 (705)
|+.....+...+...|+..+|+..|++...-|+.+...| .-.+.+.|+.++...+...+.... .-+...|-.-...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 333444444444445555555555555544443332221 233456677777766666665421 1122222222233
Q ss_pred HhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC--C-CChhHHHHHHHHHHHcC
Q 005265 395 CANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV--E-RDWVSWNAMIVGCAQNG 471 (705)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g 471 (705)
.....+++.|..+-.+.++.. +.++..+-.-...+...|++++|.-.|+... . -+..+|.-|+.+|...|
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-------~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-------PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-------cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence 345567777777777777665 3455666656677788899999998888764 3 37889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHH-HHHh-ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHH
Q 005265 472 YGTEALGLFKKMLLCGEKPDHVTMIGVL-CACS-HAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAK 548 (705)
Q Consensus 472 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 548 (705)
++.+|.-+-+...+. +.-+..+...+. ..|. ....-++|.++++... .+.|+ ....+.+...+...|..++++
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHH
Confidence 999998887776663 333444555442 3333 3344578999998554 67888 777788889999999999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 549 TLIEAM-PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 549 ~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.+++.. ...||....+.|...+...+.+.+|...|..++.++|++.
T Consensus 459 ~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 459 KLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 999987 6679999999999999999999999999999999999874
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2.8e-07 Score=91.96 Aligned_cols=441 Identities=12% Similarity=0.122 Sum_probs=239.6
Q ss_pred HHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHH--HHHHhh--c
Q 005265 123 VSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSA--LIDMYG--K 198 (705)
Q Consensus 123 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~--~ 198 (705)
+..+.+.|++++|.+...++...+ +-+...+..-+-+..+.+.++.|..+.+ ..+. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 455666777888888888877765 3345556666666677777777664332 2221 111111 233443 5
Q ss_pred CCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHH
Q 005265 199 CGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDE-VTLASVVSACASLAAFKEGLQIHAR 277 (705)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 277 (705)
.+..++|++.++.....+..+...-...+.+.|++++|+++|+.+.+.+..--. ..-..++.+-... -..
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l---------~~~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL---------QVQ 162 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh---------hHH
Confidence 677777777777555555445555566667777777777777777665432211 1111121111110 000
Q ss_pred HHHcCCCCCChhHHHH---HHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhc-CCCCe---
Q 005265 278 LMRCEKLRNDLVLGNA---LVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKM-LERNV--- 350 (705)
Q Consensus 278 ~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~-~~~~~--- 350 (705)
.++.-...| ..+|.. ..-.+...|++.+|+++++... ++..+- ...|.
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~------------------------~~~~e~l~~~d~~eE 217 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKAL------------------------RICREKLEDEDTNEE 217 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH------------------------HHHHHhhcccccchh
Confidence 111110111 112222 2233455566666666554331 000000 11110
Q ss_pred -------ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHH---HHHhhcccHH--------------HHHH
Q 005265 351 -------VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLL---NACANLADLQ--------------LGRQ 406 (705)
Q Consensus 351 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~--------------~a~~ 406 (705)
..--.|.-.+-..|+..+|..+|...++.. .+|........ .+.....++. .+..
T Consensus 218 eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 218 EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHH
Confidence 011234455667888888888888887765 34442222111 1111111111 1111
Q ss_pred HHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC-hhHHHHHHHHHHH--cCChHHHHHHHHHH
Q 005265 407 AHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERD-WVSWNAMIVGCAQ--NGYGTEALGLFKKM 483 (705)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~--~g~~~~A~~~~~~m 483 (705)
....+.... ......-+.++.+|. +.-+.+.++-...+... ...+.+++....+ ...+..|.+++...
T Consensus 297 ~l~~Ls~~q-------k~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~ 367 (652)
T KOG2376|consen 297 LLSKLSKKQ-------KQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQF 367 (652)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 111111111 112222234444443 55667777777776443 3445555544332 23467788887776
Q ss_pred HHCCCCCCh--hhHHHHHHHHhccCcHHHHHHHHH--------HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 005265 484 LLCGEKPDH--VTMIGVLCACSHAGLVEEGRKYFS--------SMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEA 553 (705)
Q Consensus 484 ~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (705)
-+. .|.. ......+......|+++.|.+++. .+. .+.-.+.+..+++..|.+.++-+-|..++.+
T Consensus 368 ~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~ 442 (652)
T KOG2376|consen 368 ADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDS 442 (652)
T ss_pred hcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHH
Confidence 663 3443 345555667788999999999988 442 2334456677888899999887777777766
Q ss_pred C-----CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 005265 554 M-----PMQPDAV----IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 554 ~-----~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
. ...+... +|.-+...-.++|+.++|..+++++++.+|++......++.+|++. +.+.|..+-+++
T Consensus 443 Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 443 AIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 5 1122222 3333444455779999999999999999999999999999999876 456676665544
No 65
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.3e-06 Score=88.39 Aligned_cols=500 Identities=14% Similarity=0.130 Sum_probs=298.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCCC--CCc-----ccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHH
Q 005265 88 WNSIITGLLKWGFIDDASRLFASMPE--RDQ-----CSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSA 160 (705)
Q Consensus 88 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 160 (705)
+-.+.+.|-++|-...|++.+..+.. +.+ ..-..++. |.-.-.++.+++.++.|...+++.|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~-yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVN-YFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 55666778888888888888877653 211 11122333 33344688899999999988888887776666666
Q ss_pred hhCCCCcHHHHHHHHHHHHc-----------CCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC---------------
Q 005265 161 CAGSVDFKMGTQVHALLSKS-----------RYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE--------------- 214 (705)
Q Consensus 161 ~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------- 214 (705)
|...=..+...++|+..... ++.-|+.+.-..|.+.|+.|++.+..++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 65544445555555554432 2455677777889999999999988888765431
Q ss_pred C----------------CcchH------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhH-------------HHHHH
Q 005265 215 R----------------NIVSW------NSLITCYEQNGPASDALEVFVRMMASGIEPDEVT-------------LASVV 259 (705)
Q Consensus 215 ~----------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------------~~~ll 259 (705)
+ |.+.| -..|..|.+.-++...-.+.-.+++..+ +... ...+.
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC--~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC--SEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC--cHHHHHHHHHHHhccCChHHHH
Confidence 1 11111 1123344443333333222222222111 1111 12233
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC------------CCCc--------
Q 005265 260 SACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMP------------IRNV-------- 319 (705)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------~~~~-------- 319 (705)
.-+-+.+++..-..+++..+..| ..|..++|+|...|..+++-.+-. +++-. ++|+
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~f--LkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERF--LKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHh--cccCCcchhhHHhhhhcccCCceEEEeec
Confidence 44556677777778888888887 678899999999988776544322 11111 1111
Q ss_pred -----------ccHHHHH----HHHHhcCCHHHHHHHHH-----------hc-----C-CCCeehHHHHHHHHHHcCChH
Q 005265 320 -----------VSETSMV----SGYAKASSVKSARLMFT-----------KM-----L-ERNVVSWNALIAGYTQNGENE 367 (705)
Q Consensus 320 -----------~~~~~li----~~~~~~~~~~~A~~~~~-----------~~-----~-~~~~~~~~~li~~~~~~g~~~ 367 (705)
-.-|++. +-+.+..+.+--.+++. .. + ..|+..-...+.++...+-+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 0112222 22233344332222221 11 1 135555666778888888888
Q ss_pred HHHHHHHHhhhCCCCc--chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCC-----------------CCCCCcHhH
Q 005265 368 EALGLFRLLKRESVCP--THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFL-----------------SGEESDIFV 428 (705)
Q Consensus 368 ~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 428 (705)
+-++++++..-..-.- +...-+.++-. +-..+.....++..++-...-+-. .....+...
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A 1080 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSA 1080 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHH
Confidence 8888888876332111 11111222211 111222222222222211110000 000122222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcH
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLV 508 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 508 (705)
.+.|++ ..+.+++|.+.-++.. .+..|..+..+-.+.|...+|++-|-+. -|...|..+++.+.+.|.+
T Consensus 1081 ~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~ 1149 (1666)
T KOG0985|consen 1081 IQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKY 1149 (1666)
T ss_pred HHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcH
Confidence 222222 2234444444444433 3457999999999999999999887432 3556899999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005265 509 EEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLE 588 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 588 (705)
++-..++...+++ .-+|.. -+.|+-+|++.+++.+-++++. -||..-...+.+-|...|.++.|.-+|..
T Consensus 1150 edLv~yL~MaRkk-~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--- 1219 (1666)
T KOG0985|consen 1150 EDLVKYLLMARKK-VREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--- 1219 (1666)
T ss_pred HHHHHHHHHHHHh-hcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH---
Confidence 9999999876554 445554 4678999999999998877764 57888888888999999999999888874
Q ss_pred hCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 589 IEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 589 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
.+.|..|+..+...|.+..|...-++.-
T Consensus 1220 -----vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1220 -----VSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3458899999999999998887766543
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2.4e-11 Score=82.79 Aligned_cols=50 Identities=30% Similarity=0.569 Sum_probs=47.8
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 005265 215 RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACAS 264 (705)
Q Consensus 215 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 264 (705)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=4.5e-09 Score=112.89 Aligned_cols=241 Identities=13% Similarity=0.018 Sum_probs=178.3
Q ss_pred ChHHHHHHHHHhhhCCCCcch-hhHHHHHHHHh---------hcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHH
Q 005265 365 ENEEALGLFRLLKRESVCPTH-YTFGNLLNACA---------NLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLID 434 (705)
Q Consensus 365 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 434 (705)
..++|+.+|++..+. .|+. ..+..+..++. ..+++++|...++++++.. +.+...+..+..
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~ 346 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNNPQALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCCHHHHHHHHH
Confidence 346788888877764 3443 33433333332 2345789999999998887 467888889999
Q ss_pred HHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHH
Q 005265 435 MYMKCGSVEDGCRIFETMVE--R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEE 510 (705)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 510 (705)
.+...|++++|...|++..+ | +...|..+...+...|++++|+..+++.++ +.|+.. .+..++..+...|++++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHH
Confidence 99999999999999998763 3 566888899999999999999999999999 567653 33344555677899999
Q ss_pred HHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 005265 511 GRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVI-WGSLLAACKVHRNIMLGEYVAKKLL 587 (705)
Q Consensus 511 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~ 587 (705)
|...++++.+. ..|+ +..+..+..+|...|+.++|...++++ +..|+... ++.+...+...| +.|...+++++
T Consensus 425 A~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 425 AIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 99999988654 2354 556778888999999999999999987 44555444 444445566667 47888888877
Q ss_pred hh---CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 588 EI---EPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 588 ~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
+. .|.++. .+..+|.-.|+-+.+..+ +++.+.+
T Consensus 501 ~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 501 ESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 65 444433 477788888998888777 7777654
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=2.8e-11 Score=82.45 Aligned_cols=50 Identities=22% Similarity=0.523 Sum_probs=44.3
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhC
Q 005265 114 RDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAG 163 (705)
Q Consensus 114 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 163 (705)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888899999999999999999999999999999999999999988864
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.7e-07 Score=87.80 Aligned_cols=279 Identities=13% Similarity=0.012 Sum_probs=201.0
Q ss_pred CCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhh----HHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCC
Q 005265 347 ERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYT----FGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGE 422 (705)
Q Consensus 347 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (705)
..|+.....+...+...|+.++|+..|++.+.. .|+..+ |..++ .+.|+.+....+...+....
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL---~~eg~~e~~~~L~~~Lf~~~------- 296 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLL---GQEGGCEQDSALMDYLFAKV------- 296 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHH---HhccCHhhHHHHHHHHHhhh-------
Confidence 357778888999999999999999999987753 343322 33333 45566666666655554332
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGV 498 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 498 (705)
......|-.-........+++.|+.+-++..+- ++..+-.-...+...|++++|.-.|+..+. +.|.. ..|..+
T Consensus 297 ~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL 374 (564)
T KOG1174|consen 297 KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGL 374 (564)
T ss_pred hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHH
Confidence 112222222233344567888998888877643 555565556778889999999999999988 67654 699999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHH-hcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcC
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMV-DLLG-RAGCLDEAKTLIEAM-PMQPDAV-IWGSLLAACKVHR 574 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g 574 (705)
+.+|...|+..+|.-.-....+.. ..+..+...+. ..+. ...--++|.+++++. .+.|+.. ..+.+...|...|
T Consensus 375 ~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 375 FHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence 999999999999988777665542 33455554442 2222 233457889999887 6778754 5566666799999
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCCCChh
Q 005265 575 NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNK 654 (705)
Q Consensus 575 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (705)
..+.+..++++.+...|+. ..+..|++++...+.+.+|...|.... ..+|+.+
T Consensus 453 ~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL--------------------------r~dP~~~ 505 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL--------------------------RQDPKSK 505 (564)
T ss_pred ccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH--------------------------hcCccch
Confidence 9999999999999999987 458999999999999999999998877 3567777
Q ss_pred HHHHHHHHHHHHHH
Q 005265 655 EIYLVLKMLTREMK 668 (705)
Q Consensus 655 ~~~~~l~~l~~~~~ 668 (705)
....-+..+.+++.
T Consensus 506 ~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 506 RTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHHHHHhccC
Confidence 77887766666665
No 70
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.3e-06 Score=92.02 Aligned_cols=526 Identities=11% Similarity=0.051 Sum_probs=256.8
Q ss_pred ChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC---------------CChhhHHHHHHHHHhc
Q 005265 34 SVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN---------------KNVFTWNSIITGLLKW 98 (705)
Q Consensus 34 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~ 98 (705)
.++...+++..|...+++-+..+.-.+..-|...=..+.-.++|+.... .|+.+.--.|.+-|+.
T Consensus 658 sve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt 737 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT 737 (1666)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh
Confidence 3566666777777777777777777777777777677778888888753 4555666778899999
Q ss_pred CChhHHHHHHhcCCC-------------------C-----CcccHH-------------HHHHHHHhCCChHHHHHHHHH
Q 005265 99 GFIDDASRLFASMPE-------------------R-----DQCSWN-------------SMVSGFAQHDRFSEALGYFVK 141 (705)
Q Consensus 99 g~~~~A~~~~~~~~~-------------------~-----~~~~~~-------------~li~~~~~~~~~~~a~~~~~~ 141 (705)
|.+.+..++.++-.- | |...+- ..|..|.+.=++...-.+.-.
T Consensus 738 ~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~ 817 (1666)
T KOG0985|consen 738 GQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGA 817 (1666)
T ss_pred ccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhh
Confidence 999888887765420 1 111111 123333333232222222222
Q ss_pred hHhCCCCCChhhH-------------HHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHH
Q 005265 142 MHSENFALSEYSF-------------GSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRV 208 (705)
Q Consensus 142 m~~~g~~p~~~~~-------------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 208 (705)
++.... +.... .-+..-+-+.+++..-...++..+..|.. |..++|+|...|..+++-.+- .
T Consensus 818 LLD~dC--~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~--f 892 (1666)
T KOG0985|consen 818 LLDVDC--SEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER--F 892 (1666)
T ss_pred hhcCCC--cHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH--h
Confidence 221111 11111 12223344555666667777888888866 899999999999877654321 1
Q ss_pred HhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHhHHHHHHHHHHccCChH-----------HHHH
Q 005265 209 FDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMAS----GIEPDEVTLASVVSACASLAAFK-----------EGLQ 273 (705)
Q Consensus 209 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~-----------~a~~ 273 (705)
+.+- ..-=+..+.-||...++.-|.-.|++-... ++.-....|....+-+....+.+ --++
T Consensus 893 LkeN----~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRq 968 (1666)
T KOG0985|consen 893 LKEN----PYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQ 968 (1666)
T ss_pred cccC----CcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHH
Confidence 1111 111111112222222221111111100000 00000011111111111111111 0112
Q ss_pred HHHHHHHcCCCC--CChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCccc-----HHHHH-------------------
Q 005265 274 IHARLMRCEKLR--NDLVLGNALVDMYAKCGKLNEARCVFDRMP-IRNVVS-----ETSMV------------------- 326 (705)
Q Consensus 274 ~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~-----~~~li------------------- 326 (705)
+.++++..+ ++ .|+.-.+..+.++...+-..+-+++++++. .+++.+ -|.++
T Consensus 969 LiDqVv~ta-l~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLd 1047 (1666)
T KOG0985|consen 969 LIDQVVQTA-LPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLD 1047 (1666)
T ss_pred HHHHHHHhc-CCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhc
Confidence 223333322 21 123333344444444454555555554443 111111 01111
Q ss_pred --------HHHHhcCCHHHHHHHHHhcCC-------------------------CCeehHHHHHHHHHHcCChHHHHHHH
Q 005265 327 --------SGYAKASSVKSARLMFTKMLE-------------------------RNVVSWNALIAGYTQNGENEEALGLF 373 (705)
Q Consensus 327 --------~~~~~~~~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~~ 373 (705)
......+-+++|..+|++..- ..+..|..+..+-.+.|...+|++-|
T Consensus 1048 nyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1048 NYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred cCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHH
Confidence 111223334455555444310 23457888888888888888888877
Q ss_pred HHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC
Q 005265 374 RLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV 453 (705)
Q Consensus 374 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 453 (705)
-+. -|+..|..+++.+.+.|.++.-...+..+.+... +|. +-+.|+-+|++.+++.+-.+.+.
T Consensus 1128 ika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~------E~~--id~eLi~AyAkt~rl~elE~fi~--- 1190 (1666)
T KOG0985|consen 1128 IKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR------EPY--IDSELIFAYAKTNRLTELEEFIA--- 1190 (1666)
T ss_pred Hhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc------Ccc--chHHHHHHHHHhchHHHHHHHhc---
Confidence 432 3566788889999999999888888887777654 444 44678888888888877665543
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 005265 454 ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTC 533 (705)
Q Consensus 454 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 533 (705)
.||..-...+..-|...|.++.|.-+|... ..|..+...+...|.+..|...-++. .+..+|..
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~ 1254 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKE 1254 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHH
Confidence 344444444455555555555554444322 12444444444444444443332211 12334444
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005265 534 MVDLLGRAGCLDEAKTLIEAMPM--QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE 606 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 606 (705)
+-.+|...+.+.-|. -.++ -....-...++..|...|-+++-..+++..+.++..+.+.|.-|+-+|++
T Consensus 1255 VcfaCvd~~EFrlAQ----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1255 VCFACVDKEEFRLAQ----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHhchhhhhHHH----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 444444333332221 1111 11222233444445555555555555555555544444445555544444
No 71
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.19 E-value=1.2e-06 Score=89.29 Aligned_cols=448 Identities=14% Similarity=0.135 Sum_probs=221.3
Q ss_pred ChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 005265 100 FIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSK 179 (705)
Q Consensus 100 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 179 (705)
++.+|..+|-+-. .-...|..|....+|++++.+-+.. |.+.-...-.+.++++...|+-+.|-++
T Consensus 546 kfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~el------ 611 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAEL------ 611 (1636)
T ss_pred hhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhh------
Confidence 4556665553211 1123455666666777776664432 3222222233445555555655554433
Q ss_pred cCCCCChhhHHHHHHHhhcCCChHHHHHHHhccC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 005265 180 SRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMR--ERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLAS 257 (705)
Q Consensus 180 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 257 (705)
..+..-..+-|+.|.+.|.+-.|.+....-. ..|......+..++.+..-+++|-++|+++.. |+ -
T Consensus 612 ---k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d----~d-----k 679 (1636)
T KOG3616|consen 612 ---KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FD-----K 679 (1636)
T ss_pred ---ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HH-----H
Confidence 1122223456788899998888877653322 24555566666666666666667666666543 11 1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCChhHH-HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHH
Q 005265 258 VVSACASLAAFKEGLQIHARLMRCEKLRNDLVLG-NALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVK 336 (705)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 336 (705)
.+..+-+..-+.+|.++-+.. +|..++.. ..-..-+...|+++.|..-|-+.. ..-..+.+-.....+.
T Consensus 680 ale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~ 749 (1636)
T KOG3616|consen 680 ALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWK 749 (1636)
T ss_pred HHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhh
Confidence 222222222233333332221 11111111 111222333444444443332111 0011122334445555
Q ss_pred HHHHHHHhcCCCCee--hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Q 005265 337 SARLMFTKMLERNVV--SWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKH 414 (705)
Q Consensus 337 ~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 414 (705)
+|+.+++.+...++. -|..+...|+..|+++.|.++|-+.- .++-.|..|.+.|.++.|.++-.+..
T Consensus 750 kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~-- 818 (1636)
T KOG3616|consen 750 KAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH-- 818 (1636)
T ss_pred hhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--
Confidence 555555555443332 24445555666666666666554321 12334555556666655555443322
Q ss_pred CCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--
Q 005265 415 GLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-- 492 (705)
Q Consensus 415 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 492 (705)
|. +..+..|-+-..-+-+.|++.+|.+++-.+..|+.. |..|-++|..++.+++..+- .|+.
T Consensus 819 ~~------e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~-----h~d~l~ 882 (1636)
T KOG3616|consen 819 GP------EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH-----HGDHLH 882 (1636)
T ss_pred Cc------hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh-----Chhhhh
Confidence 22 334445555555556667777777776666666543 55666677777666665542 2332
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC----CHHHHHH---
Q 005265 493 VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQP----DAVIWGS--- 565 (705)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~--- 565 (705)
.|...+..-+...|++..|...|-+.. -|.+-+++|..++.|++|.++-+.-+-.. -...|.-
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksig 952 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIG 952 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhC
Confidence 355555666666777777776665431 25556667777777777776665442110 0111111
Q ss_pred ---HHHHHHhcCCH-------------HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 566 ---LLAACKVHRNI-------------MLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 566 ---l~~~~~~~g~~-------------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+..+-++|.. +-|..+.+-.. ....+.++..++..+...|++++|-+.+-+..+
T Consensus 953 gdaavkllnk~gll~~~id~a~d~~afd~afdlari~~--k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 953 GDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAA--KDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred cHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhh--hccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 11112233333 33333333222 223345567777778888888888777766554
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=1.6e-09 Score=99.31 Aligned_cols=222 Identities=12% Similarity=0.027 Sum_probs=183.6
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHH
Q 005265 390 NLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--R-DWVSWNAMIVG 466 (705)
Q Consensus 390 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 466 (705)
.+-.+|.+.|.+..|...++...+. .|-+.+|--|-..|.+..+++.|+.+|.+..+ | |+....-+...
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 3445556666666666666655554 56777888889999999999999999998874 3 55555667778
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLD 545 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 545 (705)
+...++.++|.++|+...+ ..|+ ......+...|...++++.|+.+++++.+- |+ .++..|+.+.-+|.-.++++
T Consensus 300 ~eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchh
Confidence 8889999999999999998 4454 457777788888999999999999999765 64 46788999988899999999
Q ss_pred HHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 005265 546 EAKTLIEAM---PMQPD--AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 546 ~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
-++.-|++. --+|+ ..+|..+.......||+..|.+.|+-++..+|++..++++|+-+-.+.|+.++|+.+++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 999999887 12344 5589999888999999999999999999999999999999999999999999999999988
Q ss_pred HhC
Q 005265 621 RKR 623 (705)
Q Consensus 621 ~~~ 623 (705)
.+.
T Consensus 456 ~s~ 458 (478)
T KOG1129|consen 456 KSV 458 (478)
T ss_pred hhh
Confidence 764
No 73
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.17 E-value=8.8e-06 Score=83.17 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=46.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHh-hCCCCCchHHH
Q 005265 533 CMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAA-CKVHRNIMLGEYVAKKLLE-IEPSNSGPYVL 599 (705)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~ 599 (705)
+.++++...++|++|++.-++-..+|-..-|.++-.+ +.+.|+..++..++++--. .+|.+..+|-.
T Consensus 1297 aaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~ 1365 (1636)
T KOG3616|consen 1297 AAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKL 1365 (1636)
T ss_pred HHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHH
Confidence 4567888889999988888877777766666666555 5677888888887776433 25555555543
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.16 E-value=5e-09 Score=112.54 Aligned_cols=211 Identities=14% Similarity=0.025 Sum_probs=166.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHh---------cCCHHHHHHHHHccCC---CChhHHHHHHHH
Q 005265 399 ADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMK---------CGSVEDGCRIFETMVE---RDWVSWNAMIVG 466 (705)
Q Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 466 (705)
++++.|...+++.++.. +.+...+..+..+|.. .+++++|...+++..+ .+...|..+...
T Consensus 275 ~~~~~A~~~~~~Al~ld-------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~ 347 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45688999999998876 3456667666665542 3458899999998764 367788889889
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCh
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCL 544 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 544 (705)
+...|++++|...|++.++ ..|+. ..+..+..++...|++++|...++.+.+ +.|+ ...+..+...+...|++
T Consensus 348 ~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred HHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCH
Confidence 9999999999999999999 56775 4677888899999999999999998864 4565 23334445567778999
Q ss_pred HHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 545 DEAKTLIEAM--PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 545 ~~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
++|...+++. ...|+ +..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.
T Consensus 423 eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 423 DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 9999999887 22354 4456667777889999999999999998888888888888888888888 48888888876
Q ss_pred hC
Q 005265 622 KR 623 (705)
Q Consensus 622 ~~ 623 (705)
+.
T Consensus 501 ~~ 502 (553)
T PRK12370 501 ES 502 (553)
T ss_pred HH
Confidence 53
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.16 E-value=1.4e-06 Score=89.89 Aligned_cols=133 Identities=19% Similarity=0.123 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMV 535 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 535 (705)
..|......+.+.++.++|...+.+... +.|-. ..|......+...|..++|.+.|.... .+.|+ +....++.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHH
Confidence 3566677788888888999888877776 44543 456666667778899999999998664 67887 88889999
Q ss_pred HHHHhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 536 DLLGRAGCLDEAKT--LIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 536 ~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
.++.+.|+..-|.. ++..+ .+.| +...|..+...+.+.|+.+.|.+.|.-++++++.+|.
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999998777766 77776 5666 6779999999999999999999999999999877664
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=3.9e-09 Score=92.61 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVD 536 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 536 (705)
+...|.-+|...|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+... .+.|+ ..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 345567788999999999999999998 677764 88888888999999999999999776 45665 778888888
Q ss_pred HHHhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhH
Q 005265 537 LLGRAGCLDEAKTLIEAMPMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGE 612 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 612 (705)
-+|..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|+..+++.++++|+.+.+...++....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 89999999999999998843443 55888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 005265 613 VVRVRKLMRKRGV 625 (705)
Q Consensus 613 A~~~~~~~~~~~~ 625 (705)
|..+++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999887765
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=1.4e-06 Score=81.41 Aligned_cols=213 Identities=12% Similarity=0.017 Sum_probs=138.3
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcC-------C
Q 005265 400 DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNG-------Y 472 (705)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------~ 472 (705)
+-+.|.+++--+.+.- | ..--.|+-.|.+.+++.+|..+.++.....+.-|-.-...++..| +
T Consensus 269 ngEgALqVLP~L~~~I--------P--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKHI--------P--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred CCccHHHhchHHHhhC--------h--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 3455666665544431 2 233456777899999999999999987655554443333344444 3
Q ss_pred hHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005265 473 GTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLI 551 (705)
Q Consensus 473 ~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 551 (705)
..-|.+.|+-.-+.+..-|.. --.++..++.-..++++.+.++..+. .+=...|...+ .+.++++..|++.+|+++|
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcChHHHHHHH
Confidence 445666666555555555543 34445555556678899998888874 43333344444 4789999999999999999
Q ss_pred HhCC-CC-CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCCCC-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005265 552 EAMP-MQ-PDAVIWGSL-LAACKVHRNIMLGEYVAKKLLEIEPSNS-GPYVLLSNMYAELGRWGEVVRVRKLMRKRGVV 626 (705)
Q Consensus 552 ~~~~-~~-p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 626 (705)
-... .+ .|..+|.++ ..+|.+.+.++.|..++-++- .|.+. .....+++-|.+.+.+--|.+.|..+......
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 8873 11 356666555 455778899988887754431 23332 22456778899999999899999888765433
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=7.7e-07 Score=88.89 Aligned_cols=439 Identities=11% Similarity=0.065 Sum_probs=211.6
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHHH--hcCChh
Q 005265 25 LLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLL--KWGFID 102 (705)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~g~~~ 102 (705)
=+..+...+++++|.+.-.+++..+ +-+.+....-+-++.+.+++++|.++.+.-........-.+=.+|| +.++.+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHH
Confidence 4566667788888888888888766 6666777777778888888888886655543211111111234444 566777
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCC-ChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Q 005265 103 DASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFAL-SEYSFGSALSACAGSVDFKMGTQVHALLSKSR 181 (705)
Q Consensus 103 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 181 (705)
+|+..++...+.+..+...-...+-+.|++++|+++|+.+.+.+..- +...-..++.+-.. ... ..+....
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~~q~v~ 168 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QLLQSVP 168 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HHHHhcc
Confidence 77777764444444444555556666677777777777765553321 11111111111100 000 0111111
Q ss_pred CCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC-------C------C
Q 005265 182 YSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMAS-------G------I 248 (705)
Q Consensus 182 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g------~ 248 (705)
..| ..+|..+.+. ...++..|++.+|+++++..... + +
T Consensus 169 ~v~-e~syel~yN~----------------------------Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEei 219 (652)
T KOG2376|consen 169 EVP-EDSYELLYNT----------------------------ACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEI 219 (652)
T ss_pred CCC-cchHHHHHHH----------------------------HHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhH
Confidence 111 2222222211 12233344444444444444110 0 0
Q ss_pred CCCHh-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHH----HHHHHHHHhcCChH-HHHHHHhhCCCCCc---
Q 005265 249 EPDEV-TLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLG----NALVDMYAKCGKLN-EARCVFDRMPIRNV--- 319 (705)
Q Consensus 249 ~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~-~A~~~~~~~~~~~~--- 319 (705)
.-+.. .-..+.-.+-..|+-++|..+|..+++.. ++|.... |.|+.+-....-++ .++..++.......
T Consensus 220 e~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~ 297 (652)
T KOG2376|consen 220 EEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL 297 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH
Confidence 00000 11122233445566666666666666653 3333222 22221111111111 12222222111111
Q ss_pred ------------ccHHHHHHHHHhcCCHHHHHHHHHhcCCCC-eehHHHHHHHHH--HcCChHHHHHHHHHhhhCCCCcc
Q 005265 320 ------------VSETSMVSGYAKASSVKSARLMFTKMLERN-VVSWNALIAGYT--QNGENEEALGLFRLLKRESVCPT 384 (705)
Q Consensus 320 ------------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~ 384 (705)
..-+.++.. -.+..+.+.++....+... ...+.+++.... +...+.++.+++...-+....-.
T Consensus 298 l~~Ls~~qk~~i~~N~~lL~l--~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s 375 (652)
T KOG2376|consen 298 LSKLSKKQKQAIYRNNALLAL--FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS 375 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh
Confidence 011112222 2344555666666665543 233444444332 22356777777776665432222
Q ss_pred hhhHHHHHHHHhhcccHHHHHHHHH--------HHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--
Q 005265 385 HYTFGNLLNACANLADLQLGRQAHT--------HVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE-- 454 (705)
Q Consensus 385 ~~t~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 454 (705)
....-..++.....|+++.|.+++. .+.+.+ ..+.+..+++..|.+.++-+.|..++++...
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~--------~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK--------HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc--------cChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 3445555666788899999999988 444433 3455667788888888887777777765431
Q ss_pred ----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHH
Q 005265 455 ----RDW----VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYF 515 (705)
Q Consensus 455 ----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (705)
... ..|.-+...-.++|+.++|..+++++.+. -.+|..+...++.+|++. +++.|..+-
T Consensus 448 ~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 448 RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 111 12222233333456666666666666652 123334555555555543 444554443
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.13 E-value=2.6e-08 Score=95.03 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=87.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCA 501 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~ 501 (705)
...+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+....|. ...+..+...
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 34444444455555555555555544431 2334445555555556666666666666554322222 2244445555
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIML 578 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 578 (705)
+...|++++|...++...+. .|+ ...+..+...+...|++++|...+++. .. +++...+..+...+...|+.+.
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 66666666666666665432 232 445566666666666666666666655 22 2234455555555666677777
Q ss_pred HHHHHHHHHhhC
Q 005265 579 GEYVAKKLLEIE 590 (705)
Q Consensus 579 a~~~~~~~~~~~ 590 (705)
|....+.+.+..
T Consensus 222 a~~~~~~~~~~~ 233 (234)
T TIGR02521 222 AQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHhhC
Confidence 776666655543
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=1.3e-05 Score=81.31 Aligned_cols=583 Identities=12% Similarity=0.059 Sum_probs=334.4
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC---CChhhHHHHHHHHHhc
Q 005265 22 FAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN---KNVFTWNSIITGLLKW 98 (705)
Q Consensus 22 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 98 (705)
|...++ |-..+.+...++..+.+.+ +.+.+..+....--.+...|+.++|.+....-.. .+.+.|..+.-.+-..
T Consensus 11 F~~~lk-~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALK-CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 444444 3356778888888888877 4455555555444455567888888887776554 4557788777777777
Q ss_pred CChhHHHHHHhcCC--CC-CcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHH
Q 005265 99 GFIDDASRLFASMP--ER-DQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHA 175 (705)
Q Consensus 99 g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 175 (705)
.++++|++.|.... +| |...|--+--.-++.|+++..........+..+ -....|..+..+..-.|+...|..+.+
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999998764 33 555666665566677888888777777776522 244567777777777888999999988
Q ss_pred HHHHcCC-CCChhhHHHHH------HHhhcCCChHHHHHHHhccCCC--Cc-chHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005265 176 LLSKSRY-SSDVYMGSALI------DMYGKCGRVSCARRVFDGMRER--NI-VSWNSLITCYEQNGPASDALEVFVRMMA 245 (705)
Q Consensus 176 ~~~~~g~-~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 245 (705)
...+... .|+...+.-.. ....+.|.++.|.+-+...... |- ..-.+-...+.+.+++++|..++..++.
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 8887652 45554443322 3445678888888877665431 22 2233455667888999999999999987
Q ss_pred CCCCCCHhHHHHHHHHHH-ccCChHHHH-HHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc-ccH
Q 005265 246 SGIEPDEVTLASVVSACA-SLAAFKEGL-QIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNV-VSE 322 (705)
Q Consensus 246 ~g~~p~~~t~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 322 (705)
. .||...|...+..+. +..+.-++. .+|...-+.. +........=++......-.+..-.++..+.+.++ ..+
T Consensus 248 r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf 323 (700)
T KOG1156|consen 248 R--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF 323 (700)
T ss_pred h--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh
Confidence 4 588887777666554 233333333 5555444421 11111000000111111111112222222222221 122
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHhc--------------CCCCeehHH--HHHHHHHHcCChHHHHHHHHHhhhCCCC
Q 005265 323 TSMVSGYAKASSVKS----ARLMFTKM--------------LERNVVSWN--ALIAGYTQNGENEEALGLFRLLKRESVC 382 (705)
Q Consensus 323 ~~li~~~~~~~~~~~----A~~~~~~~--------------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~ 382 (705)
..+..-|-.-...+- +..+...+ ..|....|. .++..|-..|+++.|..+++....+ .
T Consensus 324 ~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--T 401 (700)
T KOG1156|consen 324 KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--T 401 (700)
T ss_pred hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--C
Confidence 222222211111110 00111111 123444444 4678888999999999999988764 5
Q ss_pred cchh-hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC--h--
Q 005265 383 PTHY-TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERD--W-- 457 (705)
Q Consensus 383 p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~-- 457 (705)
|+.+ -|..=.+.+...|+++.|...+....+.. .+|..+-.--+.-..+.++.++|.++.....+.+ .
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-------~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~ 474 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-------TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVN 474 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhh
Confidence 5543 33344467788899999999999988877 3777776677788888999999998887765432 1
Q ss_pred ------hHHHHH--HHHHHHcCChHHHHHHHHHHHHC--C---CCCChhh----------HHHHHHHHhccC-------c
Q 005265 458 ------VSWNAM--IVGCAQNGYGTEALGLFKKMLLC--G---EKPDHVT----------MIGVLCACSHAG-------L 507 (705)
Q Consensus 458 ------~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~--g---~~p~~~~----------~~~ll~~~~~~g-------~ 507 (705)
-.|-.+ ..+|.+.|++..|++-|..+-+. . -+-|-.| |.-++.-+-... -
T Consensus 475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~A 554 (700)
T KOG1156|consen 475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRA 554 (700)
T ss_pred hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHH
Confidence 134444 45677888887777766655432 0 1222223 222332211111 1
Q ss_pred HHHHHHHHHHhHHhcCC-CCChhHHHHH----HHHHHhcC-ChHHHHHHHHhC--------------CCCCCHHHHHHHH
Q 005265 508 VEEGRKYFSSMSKEHGL-APLKDHYTCM----VDLLGRAG-CLDEAKTLIEAM--------------PMQPDAVIWGSLL 567 (705)
Q Consensus 508 ~~~a~~~~~~~~~~~~~-~p~~~~~~~l----~~~~~~~g-~~~~A~~~~~~~--------------~~~p~~~~~~~l~ 567 (705)
...|++++=.|...... .+.......+ -....++. +-..|.+--+.+ +..||... +.
T Consensus 555 a~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~~---~g 631 (700)
T KOG1156|consen 555 AKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDEDP---FG 631 (700)
T ss_pred HHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcc---hh
Confidence 23445555544332100 0111111111 11111111 111111111111 23344441 22
Q ss_pred HHHHh-cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 568 AACKV-HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 568 ~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
..+.+ ..-.++|.+.+.......+.+...|..-..+|.+.|++.-+.+.++.....
T Consensus 632 ekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~ 688 (700)
T KOG1156|consen 632 EKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEGI 688 (700)
T ss_pred hhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 22333 334577999999888889999999999999999999999999998887643
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=2.6e-09 Score=98.05 Aligned_cols=235 Identities=11% Similarity=0.055 Sum_probs=178.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHH
Q 005265 354 NALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLI 433 (705)
Q Consensus 354 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 433 (705)
+.+..+|.+.|.+.+|.+.|+..++. .|-..||..+-.+|.+..++..|..++.+-.+.- +.++....-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-------P~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-------PFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-------CchhhhhhhhH
Confidence 45667777777777777777776664 4555567777777777777777777777666554 35555555666
Q ss_pred HHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHH
Q 005265 434 DMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEE 510 (705)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 510 (705)
..+...++.++|.++++...+. ++.+.-.+..+|.-.++++-|+.+|+++++.|+. +...|..+.-+|...+.+|-
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 7777788888888888877643 5556666677888889999999999999998865 45567777778888999999
Q ss_pred HHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005265 511 GRKYFSSMSKEHGLAPL--KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKL 586 (705)
Q Consensus 511 a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 586 (705)
++.-|++...- .-.|+ ..+|..|.......|++.-|.+.|+-. ...| ....++.|.-.-.+.|++++|..++..+
T Consensus 377 ~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 99988887643 33455 678888888889999999999999877 2334 4668888888888999999999999999
Q ss_pred HhhCCCCCchHHH
Q 005265 587 LEIEPSNSGPYVL 599 (705)
Q Consensus 587 ~~~~p~~~~~~~~ 599 (705)
....|+-.....+
T Consensus 456 ~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 456 KSVMPDMAEVTTN 468 (478)
T ss_pred hhhCccccccccc
Confidence 9888876544333
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=8e-08 Score=98.23 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=64.5
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEH-----GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM--------PMQPD 559 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~ 559 (705)
+++.+...+.+.|++++|.++|+.+++.. +..+. ...++.|...|.+.++..+|.++|.+. +..|+
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 56666666666666666666666655432 11222 445666777777777777777777664 23344
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005265 560 -AVIWGSLLAACKVHRNIMLGEYVAKKLLE 588 (705)
Q Consensus 560 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 588 (705)
..+|..|...|...|+++.|+++.+.+..
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45788999999999999999999998874
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.09 E-value=2.3e-06 Score=86.53 Aligned_cols=226 Identities=12% Similarity=0.076 Sum_probs=136.4
Q ss_pred CCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHH
Q 005265 163 GSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEV 239 (705)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 239 (705)
..+++..+.++.+.+++. .+....+.....-.+...|+.++|......-.. .+.+.|..+.-.+-...++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 455666667777766663 222333333333345567888888887766554 4556788888777788889999999
Q ss_pred HHHHHHCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--
Q 005265 240 FVRMMASGIEPDE-VTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPI-- 316 (705)
Q Consensus 240 ~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 316 (705)
|+..... .||. ..+.-+.-.-++.++++.....-....+. .+.....|..+..++--.|+...|..++++...
T Consensus 98 y~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 98 YRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9988874 4543 44544444445667777777666666664 244556777777788888888888887766542
Q ss_pred ---CCcccHHHH------HHHHHhcCCHHHHHHHHHhcCCC--Ceeh-HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc
Q 005265 317 ---RNVVSETSM------VSGYAKASSVKSARLMFTKMLER--NVVS-WNALIAGYTQNGENEEALGLFRLLKRESVCPT 384 (705)
Q Consensus 317 ---~~~~~~~~l------i~~~~~~~~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 384 (705)
++...+.-. .....+.|..+.|.+.+...... |-.. -.+-...+.+.++.++|..++..++.. .||
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 222222211 12334556666666655544322 2122 223345566677777777777777664 366
Q ss_pred hhhHHHHHHHH
Q 005265 385 HYTFGNLLNAC 395 (705)
Q Consensus 385 ~~t~~~ll~~~ 395 (705)
..-|.-.+..+
T Consensus 252 n~~Yy~~l~~~ 262 (700)
T KOG1156|consen 252 NLDYYEGLEKA 262 (700)
T ss_pred hHHHHHHHHHH
Confidence 55555444443
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=1.7e-08 Score=99.03 Aligned_cols=213 Identities=14% Similarity=0.075 Sum_probs=151.4
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHH
Q 005265 400 DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEA 476 (705)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 476 (705)
..+.+..-+.+++..... ..+.....|..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|
T Consensus 41 ~~e~~i~~~~~~l~~~~~---~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 41 QQEVILARLNQILASRDL---TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred HHHHHHHHHHHHHccccC---CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 444555555555533210 0012245677888899999999999999998763 3678999999999999999999
Q ss_pred HHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 005265 477 LGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM- 554 (705)
Q Consensus 477 ~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 554 (705)
...|++.++ +.|+. .++..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|++.
T Consensus 118 ~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999998 67865 57788888889999999999999988754 565332222233455678899999999764
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 555 -PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLL-------EIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 555 -~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
...|+...| .+ .....|+...+ ..++.+. ++.|+...+|..++.++.+.|++++|+..|++..+..
T Consensus 193 ~~~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKLDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhCCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 223333222 22 22334555443 2444443 4566677789999999999999999999999998644
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.07 E-value=3.3e-06 Score=89.34 Aligned_cols=294 Identities=14% Similarity=0.041 Sum_probs=161.2
Q ss_pred cccHHHHHHHHHh--------cCCHHHHHHHHHhcCC---CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhh
Q 005265 319 VVSETSMVSGYAK--------ASSVKSARLMFTKMLE---RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYT 387 (705)
Q Consensus 319 ~~~~~~li~~~~~--------~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 387 (705)
..+|..++..|.+ ..+...|...+.+.++ .+..+||.|.-. ...|.+.-|...|-+-.... +.+..+
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~ 852 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQ 852 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhh
Confidence 4556555544433 1222355566655533 456667766544 44456665655555444321 334556
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHcc-----C---CCChhH
Q 005265 388 FGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM-----V---ERDWVS 459 (705)
Q Consensus 388 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~---~~~~~~ 459 (705)
|..+--.|....+++.|.+.|....... +.+...|-.....-...|+.-++..+|..- . -++..-
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLd-------P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Y 925 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLD-------PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQY 925 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcC-------chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhH
Confidence 6666666677778888888887776655 345555544444445566666777766541 1 123334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC--------CCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLLC--------GEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDH 530 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 530 (705)
|-....-...+|+.++-+...+++-.. +-.|+ .+.|.......-+.+.++.|.+...+...-...+-+...
T Consensus 926 w~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sq 1005 (1238)
T KOG1127|consen 926 WLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQ 1005 (1238)
T ss_pred HHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 443333444555555444333332211 12333 356777776677777777766665554322222334444
Q ss_pred HHH----HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc---hHHHHHHH
Q 005265 531 YTC----MVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG---PYVLLSNM 603 (705)
Q Consensus 531 ~~~----l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~ 603 (705)
|+. ....+...|.++.|..-+...+...|..+...-+.. .-.++++++.+.|++++.+..++.. ....++..
T Consensus 1006 ynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~ 1084 (1238)
T KOG1127|consen 1006 YNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVC 1084 (1238)
T ss_pred hhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHH
Confidence 443 344556677777777666655444444444433333 3457788888888888877433332 23445555
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 005265 604 YAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 604 ~~~~g~~~~A~~~~~~~~~ 622 (705)
....+.-+.|...+-+...
T Consensus 1085 ~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1085 MGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HhhcccchHHHHHHHHHHH
Confidence 6666777777776666554
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.04 E-value=3.1e-06 Score=87.92 Aligned_cols=255 Identities=16% Similarity=0.161 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc-hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLKRESVCPT-HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGN 430 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (705)
++.-+...|...|++++|+.+.++.++. .|+ ...|..-...+-+.|++.+|.+.++.+..... .|..+-+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-------~DRyiNs 266 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-------ADRYINS 266 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-------hhHHHHH
Confidence 3455678888999999999999998875 455 44677777888899999999999999998874 7888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCCCh----------hHH--HHHHHHHHHcCChHHHHHHHHHHHHC--CCCCChh---
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVERDW----------VSW--NAMIVGCAQNGYGTEALGLFKKMLLC--GEKPDHV--- 493 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~--- 493 (705)
..+..+.++|++++|.+++.....++. ..| .....+|.+.|++..|++.|..+.+. .+.-|..
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH 346 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFH 346 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 889999999999999999888775541 133 34567899999999998877766552 1222222
Q ss_pred ----------hHHHHHHHHhccC-------cHHHHHHHHHHhHHhcCCCCCh-----------hHHHHHHHHH---HhcC
Q 005265 494 ----------TMIGVLCACSHAG-------LVEEGRKYFSSMSKEHGLAPLK-----------DHYTCMVDLL---GRAG 542 (705)
Q Consensus 494 ----------~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~p~~-----------~~~~~l~~~~---~~~g 542 (705)
+|..+++..-+.. -...|.+++-.+.......... .--..+-.-. .+..
T Consensus 347 ~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~ 426 (517)
T PF12569_consen 347 SYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKA 426 (517)
T ss_pred HHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHH
Confidence 2333332221111 1123333333332210000000 0000000000 0111
Q ss_pred ChHHHHHHHH-----------hC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 543 CLDEAKTLIE-----------AM------PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 543 ~~~~A~~~~~-----------~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
.-+++...-. .. +..||+.-- .|+ ....=+++|.+.++-+.+..|++..+|..-..+|.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~Ge-kL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~ 502 (517)
T PF12569_consen 427 KKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGE-KLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYL 502 (517)
T ss_pred hHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHH-HHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHH
Confidence 1111111100 00 112222211 111 23345688999999999999999999999999999
Q ss_pred hcCChhHHHHHHHH
Q 005265 606 ELGRWGEVVRVRKL 619 (705)
Q Consensus 606 ~~g~~~~A~~~~~~ 619 (705)
+.|++-.|++.+.+
T Consensus 503 Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 503 RKGKYLLALQALKK 516 (517)
T ss_pred hcCcHHHHHHHHHh
Confidence 99999999887754
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.03 E-value=1.9e-07 Score=91.61 Aligned_cols=216 Identities=11% Similarity=-0.035 Sum_probs=150.8
Q ss_pred CChHHHHHHHHHhhhCC-CCcc--hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcC
Q 005265 364 GENEEALGLFRLLKRES-VCPT--HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCG 440 (705)
Q Consensus 364 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 440 (705)
+..+.++.-+.+++... ..|+ ...|......+...|+.+.|...|...++.. +.+...|+.+...|...|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQAG 112 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCC
Confidence 45566777777766432 2222 2345555666777888888888888888776 467889999999999999
Q ss_pred CHHHHHHHHHccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHH
Q 005265 441 SVEDGCRIFETMVE--R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSS 517 (705)
Q Consensus 441 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 517 (705)
++++|...|++..+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|+.
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999998853 3 567888888899999999999999999998 567654322222334567789999999976
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCChHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 518 MSKEHGLAPLKDHYTCMVDLLGRAGCLDE--AKTLIEAM-PM----QP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 518 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
.... ..|+...+ .+.. ...|+..+ +.+.+.+. .. .| ....|..+...+.+.|++++|...|+++++.
T Consensus 191 ~~~~--~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEK--LDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhh--CCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5432 23433222 2333 33455433 33333322 11 12 3457888999999999999999999999999
Q ss_pred CCCC
Q 005265 590 EPSN 593 (705)
Q Consensus 590 ~p~~ 593 (705)
+|.+
T Consensus 266 ~~~~ 269 (296)
T PRK11189 266 NVYN 269 (296)
T ss_pred CCch
Confidence 9754
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=1.3e-06 Score=81.22 Aligned_cols=298 Identities=14% Similarity=0.088 Sum_probs=163.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHH---HHHHhcCCHHHHHHHHHhcCCCCeehHHHHH---HHHHHcCCh
Q 005265 293 ALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMV---SGYAKASSVKSARLMFTKMLERNVVSWNALI---AGYTQNGEN 366 (705)
Q Consensus 293 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~ 366 (705)
.+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|..-+.+..+..+..+.+-+ ..+.+.|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 3445555566666666666666666655555543 2455566666666666666443333333332 346677777
Q ss_pred HHHHHHHHHhhhCCCCcch--------------hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHH
Q 005265 367 EEALGLFRLLKRESVCPTH--------------YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSL 432 (705)
Q Consensus 367 ~~A~~~~~~m~~~g~~p~~--------------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (705)
++|..-|+..+......+. ......+..+...|+...+......+++.. +.+...+..-
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-------~Wda~l~~~R 195 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-------PWDASLRQAR 195 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-------cchhHHHHHH
Confidence 7777777777665321110 012223344455677777777777777765 3677777777
Q ss_pred HHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHH
Q 005265 433 IDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVE 509 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 509 (705)
..+|...|++..|+.-++... ..+....--+-..+...|+.+.++...++-++ +.||....-..- ..+.
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~Y------Kklk 267 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFY------KKLK 267 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHH------HHHH
Confidence 888888888888876665543 44566666666777777887777777777766 667764211110 1111
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--H---HHHHHHHHHHHhcCCHHHHHHHH
Q 005265 510 EGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD--A---VIWGSLLAACKVHRNIMLGEYVA 583 (705)
Q Consensus 510 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~---~~~~~l~~~~~~~g~~~~a~~~~ 583 (705)
+..+.++.|. ...+.++|.++++-.+.. ...|. . ..+..+..+++..|++.+|++..
T Consensus 268 Kv~K~les~e-----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 268 KVVKSLESAE-----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred HHHHHHHHHH-----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 1111122111 112233344444333332 22232 1 12222333344555566666666
Q ss_pred HHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 584 KKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 584 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.++++++|++..++..-+.+|.-...|++|+.-|++..+
T Consensus 331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 666666666555555566666655566666665555544
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.5e-06 Score=84.60 Aligned_cols=216 Identities=17% Similarity=0.119 Sum_probs=152.4
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChh---------
Q 005265 388 FGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWV--------- 458 (705)
Q Consensus 388 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------- 458 (705)
...+.++..+..+++.+.+.+....... .++.-++....+|...|........-....+....
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIa 298 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIA 298 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHH
Confidence 3445566666677888888877776653 35555666777788888777766665554433211
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHH
Q 005265 459 -SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLK-DHYTCMVD 536 (705)
Q Consensus 459 -~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~ 536 (705)
+...+..+|.+.++++.|+..|++.+.....||.. .+....+++....... .-+.|.. .-.-.-..
T Consensus 299 k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 299 KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERK---AYINPEKAEEEREKGN 366 (539)
T ss_pred HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHH---HhhChhHHHHHHHHHH
Confidence 22224456777788999999999987765555432 2233444554444433 1344542 22222366
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHH
Q 005265 537 LLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVV 614 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 614 (705)
.+.+.|++.+|+..|.++ ...| |...|..-..+|.+.|.+..|.+-.+..++++|+....|..-+.++....+|++|.
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999988 3445 67788888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 005265 615 RVRKLMRKR 623 (705)
Q Consensus 615 ~~~~~~~~~ 623 (705)
+.|++.++.
T Consensus 447 eay~eale~ 455 (539)
T KOG0548|consen 447 EAYQEALEL 455 (539)
T ss_pred HHHHHHHhc
Confidence 999887753
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.99 E-value=3.3e-06 Score=89.35 Aligned_cols=307 Identities=11% Similarity=-0.033 Sum_probs=174.4
Q ss_pred HHHHHHHhhCC---CCCcccHHHHHHHHHhcCCHHHHHHHHHhc---CCCCeehHHHHHHHHHHcCChHHHHHHHHHhhh
Q 005265 305 NEARCVFDRMP---IRNVVSETSMVSGYAKASSVKSARLMFTKM---LERNVVSWNALIAGYTQNGENEEALGLFRLLKR 378 (705)
Q Consensus 305 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 378 (705)
..|...+.+.. ..+...|+.|.-. ...|++.-|.--|-+- .+....+|..+...+.++.+++.|...|...+.
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 35666666544 4566777776554 5556666666666544 234667888888888899999999999988876
Q ss_pred CCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC-----
Q 005265 379 ESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV----- 453 (705)
Q Consensus 379 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----- 453 (705)
.. +.|...+..........|+.-+...+|..--.... ..+.-+...-+-+........|+.++-+..-+.+.
T Consensus 879 Ld-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~--~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 879 LD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS--KEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred cC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc--cccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 43 23444454444444555666666666655222111 01113444444444444555666655554444432
Q ss_pred --------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHH----HHHHhccCcHHHHHHHHHHhHH
Q 005265 454 --------ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLC-GEKPDHVTMIGV----LCACSHAGLVEEGRKYFSSMSK 520 (705)
Q Consensus 454 --------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~ 520 (705)
..+...|.+.....-+.+.+..|.++..+.+.- ..+-|..+|+.+ .+.+...|.++.|...+.....
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence 125567777777777888888888887775431 123344444432 2334445566655443332110
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 521 EHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM----PMQPDAV-IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 521 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
..+......-+. ..-.|+++++.+.|+++ ....|.+ ....++.+....+..+.|...+-+.....|.+..
T Consensus 1036 ----evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~ 1110 (1238)
T KOG1127|consen 1036 ----EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQAS 1110 (1238)
T ss_pred ----hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchh
Confidence 111111111111 13367888888888887 2233433 3344444556677778888888888888777777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
....|.-++.-..+-.....+.+++
T Consensus 1111 sll~L~A~~ild~da~~ssaileel 1135 (1238)
T KOG1127|consen 1111 SLLPLPAVYILDADAHGSSAILEEL 1135 (1238)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 7777766665555444444444444
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=2.3e-08 Score=99.36 Aligned_cols=219 Identities=16% Similarity=0.107 Sum_probs=177.4
Q ss_pred hhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCC
Q 005265 396 ANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGY 472 (705)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 472 (705)
.+.|++.+|.-.|+..++.. +.+...|.-|.-.....++-..|+..+.+..+ .|......|...|...|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 46677888888888888776 47888999999999999998899988888764 367788888889999999
Q ss_pred hHHHHHHHHHHHHCCCC-----C---ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005265 473 GTEALGLFKKMLLCGEK-----P---DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCL 544 (705)
Q Consensus 473 ~~~A~~~~~~m~~~g~~-----p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 544 (705)
-.+|++.++.-+....+ + +..+-.. .............++|-++....+..+|+.+..+|.-.|--.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999998763210 0 1100000 222333445566677777766667678899999999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 545 DEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 545 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
++|.+.|+.+ .++| |...||-|...+....+.++|+..|.+++++.|.-..+...|+-.|...|.|+||.+.|=....
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999998 6677 6778999999999999999999999999999999999999999999999999999999987765
Q ss_pred C
Q 005265 623 R 623 (705)
Q Consensus 623 ~ 623 (705)
.
T Consensus 527 m 527 (579)
T KOG1125|consen 527 M 527 (579)
T ss_pred h
Confidence 3
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.90 E-value=6.7e-07 Score=78.85 Aligned_cols=194 Identities=14% Similarity=0.080 Sum_probs=138.8
Q ss_pred HHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHH
Q 005265 392 LNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCA 468 (705)
Q Consensus 392 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 468 (705)
.-.|...|+...|+.-++++++.. +.+..++..+...|.+.|..+.|.+-|++.. ..+-...|....-+|
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~D-------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHD-------PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 344555666666666666666655 4566777778888888888888888887765 235567777777788
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHH
Q 005265 469 QNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDE 546 (705)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 546 (705)
..|++++|...|++....-.-|.. .||..+.-+..+.|+.+.|.++|++..+ ..|+ ......+.+...+.|++..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchH
Confidence 888888888888888775433333 4677777777788888888888887653 3555 6667777888888888888
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 547 AKTLIEAM--PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 547 A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
|..+++.. ...++..+..-.+..-...||.+.+.+.-.++....|....
T Consensus 192 Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 192 ARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 88888776 23466666666666677788888888887777777887654
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=0.00022 Score=74.45 Aligned_cols=247 Identities=13% Similarity=0.132 Sum_probs=120.8
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCc---
Q 005265 349 NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESD--- 425 (705)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 425 (705)
|+...+.-..-++...++++|..++-..++ |...+..|...+ ..-..++-+.|.-.. +..|+
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~K-----d~~~~e~~ 1143 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTK-----DDMPNEQE 1143 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCc-----CCCccHHH
Confidence 555566666777788888888888765543 333444443332 222222323332110 00233
Q ss_pred -HhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHH---------H----HHHHHHCCCCCC
Q 005265 426 -IFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALG---------L----FKKMLLCGEKPD 491 (705)
Q Consensus 426 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~---------~----~~~m~~~g~~p~ 491 (705)
..+...+.+.+.+.|.+..|-+-|-+.-.+ -..+.++.+.|+.++..- + -+-++....+-|
T Consensus 1144 R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~ 1218 (1416)
T KOG3617|consen 1144 RKQVLEQVAELCLQQGAYHAATKKFTQAGDK-----LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDN 1218 (1416)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccC
Confidence 245566778888888888888777654321 112445555555443110 0 011112223444
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH-HHHHHH----
Q 005265 492 HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDA-VIWGSL---- 566 (705)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l---- 566 (705)
+.+...++.-|.+...++.--.+++...+ .....|..+-. ..|-+++|-+.+.++..+.+. ..+++|
T Consensus 1219 pq~mK~I~tFYTKgqafd~LanFY~~cAq-----iEiee~q~ydK---a~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~ 1290 (1416)
T KOG3617|consen 1219 PQTMKDIETFYTKGQAFDHLANFYKSCAQ-----IEIEELQTYDK---AMGALEEAAKCLLKAEQKNMSTTGLDALQEDL 1290 (1416)
T ss_pred hHHHhhhHhhhhcchhHHHHHHHHHHHHH-----hhHHHHhhhhH---HhHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 45555555445444434333333332211 11111111111 123445555555555322221 122222
Q ss_pred ------HHHHHh-cCCHHHHHHHHHHHHhhCCCCC------chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 567 ------LAACKV-HRNIMLGEYVAKKLLEIEPSNS------GPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 567 ------~~~~~~-~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
+..... ..|..+.++-...+++. |..+ ..|..|+..|....+|..|.+.++.|..+-
T Consensus 1291 a~vk~~l~~~q~~~eD~~~~i~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1291 AKVKVQLRKLQIMKEDAADGIRQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 222111 12445555555555443 3222 357788999999999999999999998653
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=5e-06 Score=86.41 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=78.8
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAAC 570 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 570 (705)
++..+...|...|++++|+++.+..+. ..|+ +..|..-...|-+.|++++|.+.++.. .+.+ |-..-+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 334445566677777777777776653 3565 667777777777777777777777776 3333 344444455556
Q ss_pred HhcCCHHHHHHHHHHHHhhC--CCCC-------chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 571 KVHRNIMLGEYVAKKLLEIE--PSNS-------GPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~--p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+.|++++|++.+......+ |... -...--+.+|.+.|++..|++-+..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 67777777777777665443 1110 0123456677778888877776665543
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1.9e-05 Score=72.24 Aligned_cols=401 Identities=12% Similarity=0.081 Sum_probs=210.9
Q ss_pred hHHHHHHHhhcCCChHHHHHHHhccCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHH
Q 005265 188 MGSALIDMYGKCGRVSCARRVFDGMRER---NIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLAS-VVSACA 263 (705)
Q Consensus 188 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~ 263 (705)
-+++.+..+.+..++++|++++..-.++ +....+.|..+|....++..|-+.|+.+-. ..|...-|.. -...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHH
Confidence 3555666666777788888777665543 344567777777777888888888877765 3454444432 234455
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCChhHHHHHH----HHHHhcCChHHHHHHHhhCCC-CCcccHHHHHHHHHhcCCHHHH
Q 005265 264 SLAAFKEGLQIHARLMRCEKLRNDLVLGNALV----DMYAKCGKLNEARCVFDRMPI-RNVVSETSMVSGYAKASSVKSA 338 (705)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A 338 (705)
+.+.+..|+++...+... ....+..+ ......+++..+..++++.+. .+..+.+...-...+.|+.+.|
T Consensus 90 ~A~i~ADALrV~~~~~D~------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHH
Confidence 666777777766654332 11111111 112335666666666666652 3444444444444556666666
Q ss_pred HHHHHhcCCC----CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhh----HHHHHHHHhhcccHHHHHHHHHH
Q 005265 339 RLMFTKMLER----NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYT----FGNLLNACANLADLQLGRQAHTH 410 (705)
Q Consensus 339 ~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~ 410 (705)
.+-|+...+- ....||.. .++.+.++++.|+++..++.+.|++..+.. -+-.+++-. .|+ ...++.
T Consensus 164 vqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgN---t~~lh~- 237 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGN---TLVLHQ- 237 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccc---hHHHHH-
Confidence 6666655431 23344432 333455556666666666666554322210 000000000 000 000000
Q ss_pred HHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005265 411 VVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER-----DWVSWNAMIVGCAQNGYGTEALGLFKKMLL 485 (705)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (705)
+ .-+..+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-++-+++
T Consensus 238 ---S---------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 238 ---S---------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ 304 (459)
T ss_pred ---H---------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh
Confidence 0 00122233334567889999999999999854 777766553221 24556666666666666
Q ss_pred CCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-CCChhHHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHHH
Q 005265 486 CGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGL-APLKDHYTCMVDLLG-RAGCLDEAKTLIEAMPMQPDAVI 562 (705)
Q Consensus 486 ~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~ 562 (705)
. .| ...||..++-.|++..-++.|-.++.+-... .. -.+...|+ |++++. -.-..++|.+-++.....--...
T Consensus 305 ~--nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kL 380 (459)
T KOG4340|consen 305 Q--NPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKL 380 (459)
T ss_pred c--CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 44 3469999999999999999888887633110 00 11223333 333333 33456666665554410000000
Q ss_pred HHHHHHH-HHhcCC----HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 563 WGSLLAA-CKVHRN----IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 563 ~~~l~~~-~~~~g~----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
-...+.. -.++.+ ...+.+-|++.+++-- .+....+++|.+..++.-+.++|+.-.+
T Consensus 381 RklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 381 RKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 0000111 111111 1233444555554421 2356778889999999999999987654
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=1.2e-05 Score=83.25 Aligned_cols=235 Identities=14% Similarity=0.138 Sum_probs=142.2
Q ss_pred CChhhHHHHH--HHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC-C--------CCCCH
Q 005265 184 SDVYMGSALI--DMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMAS-G--------IEPDE 252 (705)
Q Consensus 184 ~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~ 252 (705)
-|..+..+++ +.|.--|+++.|.+-.+.+. +-..|..|.+.|.+..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 3566666666 45677788888877666554 3456888888888888777776666555431 1 1122
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CcccHHHHHHHHHh
Q 005265 253 VTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIR-NVVSETSMVSGYAK 331 (705)
Q Consensus 253 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~ 331 (705)
.+-.-+.-.....|.+++|..+|++..+.. .|=..|-..|.+++|.++-+.-..- =-.+|.....-+-.
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 222222223346688888888888876643 3445566778888888766543221 12356666666667
Q ss_pred cCCHHHHHHHHHhcCCC-----------------------CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhH
Q 005265 332 ASSVKSARLMFTKMLER-----------------------NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTF 388 (705)
Q Consensus 332 ~~~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 388 (705)
.++.+.|++.|++...+ |...|.=...-+-..|+.+.|+.+|..... |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 77788777777765221 222333333334445666666666665443 3
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 005265 389 GNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM 452 (705)
Q Consensus 389 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 452 (705)
-++++..|-.|+.++|-++-++ ..|......|...|...|++.+|...|-+.
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e------------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE------------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh------------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3445555666777766665543 345555666777777777777777777654
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=3e-07 Score=88.79 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=73.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh---HHHHHHHHHHhcCChH
Q 005265 469 QNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKD---HYTCMVDLLGRAGCLD 545 (705)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~ 545 (705)
..|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..|.. ...+.+..+.-...+.
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHH
Confidence 345555555544321 2233334444455555555555555555531 222211 1111222222223466
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 005265 546 EAKTLIEAM--PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRW-GEVVRVRKLMRK 622 (705)
Q Consensus 546 ~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 622 (705)
+|..+|+++ ...+++.+.+.+..++...|++++|+++++++++.+|.++.+..+++.+....|+. +.+.+.+.+++.
T Consensus 185 ~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 185 DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666665 22355666666666666677777777777776666777666666666666666666 445566666553
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.74 E-value=7.3e-07 Score=86.13 Aligned_cols=227 Identities=14% Similarity=0.088 Sum_probs=147.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHH
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSL 432 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (705)
...+.+++...|+++.++ .+..... .|.......+...+....+-+.+..-+......... ..+..+....
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~-----~~~~~~~~~~ 108 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAG-----ESNEIVQLLA 108 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS--------CHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccc-----cccHHHHHHH
Confidence 344567777778766544 3333322 555555555544444433333333333322222210 2344444444
Q ss_pred HHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCcH
Q 005265 433 IDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSH----AGLV 508 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~ 508 (705)
..++...|++++|++++... .+....-..+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhH
Confidence 56677889999999988776 5566666778899999999999999999987 44444 44445554432 3468
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 005265 509 EEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNI-MLGEYVAKK 585 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 585 (705)
.+|.-+|+++... ..+++.+.+.+..+....|++++|.+++++. ...| |+.++..++-.+...|+. +.+.+...+
T Consensus 184 ~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 9999999998654 4577888999999999999999999998886 4444 566777788877888887 778889999
Q ss_pred HHhhCCCCCc
Q 005265 586 LLEIEPSNSG 595 (705)
Q Consensus 586 ~~~~~p~~~~ 595 (705)
+....|+++.
T Consensus 262 L~~~~p~h~~ 271 (290)
T PF04733_consen 262 LKQSNPNHPL 271 (290)
T ss_dssp CHHHTTTSHH
T ss_pred HHHhCCCChH
Confidence 9889998753
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=2.3e-05 Score=71.69 Aligned_cols=238 Identities=13% Similarity=0.090 Sum_probs=123.4
Q ss_pred cCCChHHHHHHHhccC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 005265 198 KCGRVSCARRVFDGMR-ERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHA 276 (705)
Q Consensus 198 ~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 276 (705)
..+++..+..+.++.+ +.+..+.+.......+.|+++.|++-|+...+-|---....|+..+.. .+.++.+.|++...
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iS 202 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHIS 202 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHH
Confidence 4566677777777776 355555555555566777777777777776664322233455544433 35567777777777
Q ss_pred HHHHcCCCCCChhHH----HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCC----
Q 005265 277 RLMRCEKLRNDLVLG----NALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLER---- 348 (705)
Q Consensus 277 ~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---- 348 (705)
++++.| +...+..- .-.+++-.-.+-...+..-+ +..+|.-...+.+.++.+.|.+.+-.|+.+
T Consensus 203 EIieRG-~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~e 274 (459)
T KOG4340|consen 203 EIIERG-IRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEE 274 (459)
T ss_pred HHHHhh-hhcCCccCccceeccCchhcccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCccccc
Confidence 777665 33222110 00000000000000000000 011222233355677777777877777653
Q ss_pred -CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh
Q 005265 349 -NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF 427 (705)
Q Consensus 349 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 427 (705)
|++|...+.-.- -.+++.+..+-+.-+...+. -...||..++-.||+..-++.|-.++.+-...-.. -.+..
T Consensus 275 lDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk-----~L~~Y 347 (459)
T KOG4340|consen 275 LDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYK-----FLTPY 347 (459)
T ss_pred CCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHH-----HhhHH
Confidence 667765544322 23455555555555555533 34568888888899988888888777543222111 12334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHc
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFET 451 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~ 451 (705)
.|+.|=......-.+++|.+-++.
T Consensus 348 ly~LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 348 LYDLLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 444332222333455666555544
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3e-05 Score=77.12 Aligned_cols=245 Identities=12% Similarity=0.020 Sum_probs=162.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH--
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGN-- 430 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-- 430 (705)
.-.+..+.-+..++..|++.+....+.. -+..-++..-.++...|........-...++.|. ....-|+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-------e~rad~klI 297 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-------ELRADYKLI 297 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-------HHHHHHHHH
Confidence 3446666667777888888887777654 3333444555566777777766666666665553 2222222
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHccCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHH
Q 005265 431 -----SLIDMYMKCGSVEDGCRIFETMVER--DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCAC 502 (705)
Q Consensus 431 -----~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~ 502 (705)
.+..+|.+.++++.|+..|.+...+ +... ..+....++++.......- +.|... -...-...+
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~ 368 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEA 368 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHH
Confidence 2344677788899999999886532 2222 2223344555555555444 445542 223335667
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHH
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAV-IWGSLLAACKVHRNIMLG 579 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a 579 (705)
.+.|++..|+..+.++++. .|+ ...|....-+|.+.|.+..|++=.+.. ...|+.. .|.-=..++....+++.|
T Consensus 369 Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred HhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998865 354 889999999999999999999877766 4566543 455555556677899999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 005265 580 EYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRK 618 (705)
Q Consensus 580 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 618 (705)
.+.|.+.++.+|++......+..++..+.......++.+
T Consensus 446 leay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 446 LEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 999999999999998877777777665433333344433
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=1.3e-06 Score=83.25 Aligned_cols=181 Identities=11% Similarity=0.005 Sum_probs=124.8
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh---
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--R-DW---VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV--- 493 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--- 493 (705)
+.....+..+...+.+.|+++.|...|+++.. | +. .+|..+..++...|++++|+..++++.+ ..|+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchH
Confidence 45666777788888888888888888887753 2 22 3567777888888888888888888887 445433
Q ss_pred -hHHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 005265 494 -TMIGVLCACSHA--------GLVEEGRKYFSSMSKEHGLAPLK-DHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIW 563 (705)
Q Consensus 494 -~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 563 (705)
++..+..++... |++++|.+.++.+.+. .|+. ..+..+.... ...... ....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~ 169 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKE 169 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHH
Confidence 344444455443 6778888888877654 3442 2222221110 011000 0011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNS---GPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
..+...+...|++++|...++++++..|+++ ..+..++.++.+.|++++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455668899999999999999999977654 57899999999999999999999888754
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.71 E-value=0.00043 Score=69.11 Aligned_cols=175 Identities=14% Similarity=0.089 Sum_probs=127.4
Q ss_pred hHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHH
Q 005265 366 NEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDG 445 (705)
Q Consensus 366 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 445 (705)
.+.....+++++..-..--..+|...++...+...++.|+.+|.++.+.+.. ..++.++++++..||. ++.+-|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~-----~hhVfVa~A~mEy~cs-kD~~~A 420 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT-----RHHVFVAAALMEYYCS-KDKETA 420 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC-----cchhhHHHHHHHHHhc-CChhHH
Confidence 4556666666665432333456778888888889999999999999988772 2388899999998874 678899
Q ss_pred HHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005265 446 CRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH--VTMIGVLCACSHAGLVEEGRKYFSSMSK 520 (705)
Q Consensus 446 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (705)
.++|+--.++ ++.--...+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+.-|+...+.++-+++..
T Consensus 421 frIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 421 FRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999876532 3444456677778888889999999999988777776 4889999888889999998888887765
Q ss_pred hcC--CCCChhHHHHHHHHHHhcCChHH
Q 005265 521 EHG--LAPLKDHYTCMVDLLGRAGCLDE 546 (705)
Q Consensus 521 ~~~--~~p~~~~~~~l~~~~~~~g~~~~ 546 (705)
.+. ..|....-..+++.|.-.+....
T Consensus 501 af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 501 AFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hcchhhcCCCChHHHHHHHHhhcccccc
Confidence 544 33333444555666665554443
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.71 E-value=1.7e-06 Score=94.64 Aligned_cols=201 Identities=12% Similarity=0.109 Sum_probs=171.8
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER--------DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVT 494 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 494 (705)
+.+...|-..|......++.+.|++++++.... -...|.++++.-...|.-+...++|+++.+ +.-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 456788899999999999999999999988642 345899999988889988899999999998 3333457
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD---AVIWGSLLAAC 570 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 570 (705)
|..|...|.+.+.+++|.++++.|.++++ ....+|...++.+.+..+-++|..++.++ ..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999876 56778999999999999999999999887 33343 33444455556
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVK 627 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 627 (705)
.++|+.+++..+|+..+...|.....|..+++.-.+.|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 789999999999999999999999999999999999999999999999999877643
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=5.5e-05 Score=77.35 Aligned_cols=257 Identities=10% Similarity=-0.072 Sum_probs=143.0
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCcch-hhHHHHHHHHhh----cccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHH
Q 005265 358 AGYTQNGENEEALGLFRLLKRESVCPTH-YTFGNLLNACAN----LADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSL 432 (705)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (705)
..+...|++++|...+++..+.. |+. ..+.. ...+.. .+....+.+.+... .+. .+........+
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~-----~~~~~~~~~~~ 120 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APE-----NPDYWYLLGML 120 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcC-----CCCcHHHHHHH
Confidence 34556677777777777766542 322 22221 111212 23333333333321 111 02333444455
Q ss_pred HHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCh--hhHHHHHHHHhccC
Q 005265 433 IDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGE-KPDH--VTMIGVLCACSHAG 506 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g 506 (705)
...+...|++++|...+++..+ .+...+..+...+...|++++|..++++...... .|+. ..|..+...+...|
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 6677778888888888877653 3455677777778888888888888887776321 1222 23445666777888
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHH-H--HHHHHHHhcCChHHHHHH---HHhC-C---CCCCHHHHHHHHHHHHhcCCH
Q 005265 507 LVEEGRKYFSSMSKEHGLAPLKDHY-T--CMVDLLGRAGCLDEAKTL---IEAM-P---MQPDAVIWGSLLAACKVHRNI 576 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~---~~p~~~~~~~l~~~~~~~g~~ 576 (705)
++++|..+++.........+..... + .+...+...|....+.+. .... + .............++...|+.
T Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 201 DYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred CHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCH
Confidence 8888888888764221111111111 1 223333444433222222 1111 1 111122223455557788889
Q ss_pred HHHHHHHHHHHhhC-C--------CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 577 MLGEYVAKKLLEIE-P--------SNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 577 ~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
+.|...++.+.... . .........+.++...|++++|.+.+.......
T Consensus 281 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 281 DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999888876542 1 123445677888899999999999999887543
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.66 E-value=7.9e-05 Score=69.72 Aligned_cols=324 Identities=13% Similarity=0.061 Sum_probs=184.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHH---HHHHHccCChHHHHHHHHHHHHcCCCCCChhH-HHHH
Q 005265 219 SWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASV---VSACASLAAFKEGLQIHARLMRCEKLRNDLVL-GNAL 294 (705)
Q Consensus 219 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l 294 (705)
-.--+...+...|++..|+.-|....+. |+..|.++ ...|...|+-.-|+.-+..+++ +.||-.. .-.-
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQR 112 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHh
Confidence 3445566667777777777777766652 22333333 3355566666666666666666 4455322 2223
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehH--HHHHHHHHHcCChHHHHHH
Q 005265 295 VDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSW--NALIAGYTQNGENEEALGL 372 (705)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~ 372 (705)
...+.+.|.++.|..-|+.+...++.. |...+|..-+. +-...| ...+..+...|+...|+..
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~-----------~~~~eaqskl~----~~~e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSN-----------GLVLEAQSKLA----LIQEHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCc-----------chhHHHHHHHH----hHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 345666777777776666554322210 00000000000 000112 2244556677888888888
Q ss_pred HHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 005265 373 FRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM 452 (705)
Q Consensus 373 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 452 (705)
...+++.. +.|...+..-..+|...|.+..|..=+..+.+.. ..++...--+-..+...|+.+.++...++.
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-------~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-------QDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-------ccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 88887742 3466666667778888888888887777776665 356666777778888889888888888776
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----
Q 005265 453 VERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----- 527 (705)
Q Consensus 453 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----- 527 (705)
.+-|+..-. +|..-....+..+.+..|.+ ....++|.++++..+...+. .|.
T Consensus 250 LKldpdHK~----Cf~~YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~---ep~~~~ir 306 (504)
T KOG0624|consen 250 LKLDPDHKL----CFPFYKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKN---EPEETMIR 306 (504)
T ss_pred HccCcchhh----HHHHHHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhc---CCccccee
Confidence 543322100 01111112222233333322 22334445555554544332 233
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
...+..+-.+|...|++.+|++...+. .+.|| ..++---..+|.-...++.|+.-|+++.+.+|++..
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 223344455666777777777777665 55665 556666667777777888888888888888887754
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=8.5e-05 Score=86.36 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=44.9
Q ss_pred HHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHH
Q 005265 538 LGRAGCLDEAKTLIEAMPMQ--PDA----VIWGSLLAACKVHRNIMLGEYVAKKLLEIE------PSNSGPYVLLSNMYA 605 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 605 (705)
+...|+.+.|..++...... ... ..+..+..++...|++++|...++++++.. +.....+..++.++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 34456666666665554210 111 112334444556666666666666665541 111223455666666
Q ss_pred hcCChhHHHHHHHHHHh
Q 005265 606 ELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~~ 622 (705)
+.|+.++|...+.+..+
T Consensus 743 ~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 743 QQGRKSEAQRVLLEALK 759 (903)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777766666654
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=7.4e-07 Score=76.71 Aligned_cols=121 Identities=10% Similarity=-0.016 Sum_probs=79.6
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 005265 478 GLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-P 555 (705)
Q Consensus 478 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 555 (705)
.+|++.++ +.|+. +.....++...|++++|...|+.+.. +.|+ ...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44555555 44553 33455566677777777777776653 3443 666677777777777777777777776 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 556 MQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 556 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
..| +...+..+..++...|++++|...|+++++..|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 334 56666777777777777777777777777777777776666665544
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.64 E-value=3.1e-06 Score=77.08 Aligned_cols=147 Identities=7% Similarity=0.033 Sum_probs=112.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGC 543 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 543 (705)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+. -+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3457778887776544433322 11 0 122356677777777776643 23348899999999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 005265 544 LDEAKTLIEAM-PMQP-DAVIWGSLLAA-CKVHRN--IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRK 618 (705)
Q Consensus 544 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 618 (705)
+++|...|++. ...| +...+..+..+ +...|+ .++|.++++++++.+|+++.++..++..+...|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 4556 56677777776 467777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 005265 619 LMRKRG 624 (705)
Q Consensus 619 ~~~~~~ 624 (705)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 998643
No 109
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.57 E-value=0.0019 Score=68.69 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=94.0
Q ss_pred HHHHHHHHhhcccHHH---HHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC----ChhHH
Q 005265 388 FGNLLNACANLADLQL---GRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER----DWVSW 460 (705)
Q Consensus 388 ~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~ 460 (705)
.+.+++.|.+.++... |.-+++...... +.|..+--.++..|+-.|-+..|.++|+.+.-+ |...|
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-------~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh 511 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-------PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH 511 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-------CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH
Confidence 4566778888887663 333444444333 456667778899999999999999999988643 33333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHH---HHHhHHhcCCCCChhHHHHHHH
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKY---FSSMSKEHGLAPLKDHYTCMVD 536 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~---~~~~~~~~~~~p~~~~~~~l~~ 536 (705)
- +..-+...|++..+...++....- ..-+. .+-..+..|| +.|.+....+. =+++... .......+-+..++
T Consensus 512 ~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ 587 (932)
T KOG2053|consen 512 L-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLS 587 (932)
T ss_pred H-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 2 334556677888777777765542 11111 1222222233 34555444333 2223211 11122445566778
Q ss_pred HHHhcCChHHHHHHHHhCCCC
Q 005265 537 LLGRAGCLDEAKTLIEAMPMQ 557 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~~~~ 557 (705)
.++..++.++-...++.|..+
T Consensus 588 ll~~~~~~~q~~~~~~~~~l~ 608 (932)
T KOG2053|consen 588 LLCNADRGTQLLKLLESMKLP 608 (932)
T ss_pred HHHhCCcHHHHHHHHhccccC
Confidence 888899999988888888533
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=7.6e-08 Score=58.56 Aligned_cols=34 Identities=41% Similarity=0.520 Sum_probs=27.3
Q ss_pred cCCCCChhhHHHHHHHhhcCCChHHHHHHHhccC
Q 005265 180 SRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMR 213 (705)
Q Consensus 180 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 213 (705)
.|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888888774
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.55 E-value=5.9e-06 Score=89.30 Aligned_cols=133 Identities=11% Similarity=0.049 Sum_probs=77.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTC 533 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 533 (705)
++..+-.|.....+.|+.++|..+++...+ +.||.. ....+..++.+.+++++|...+++... ..|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 345555555666666666666666666666 556553 455555566666666666666665542 2444 455555
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 005265 534 MVDLLGRAGCLDEAKTLIEAMP-MQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 593 (705)
+..++.+.|++++|..+|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 5566666666666666666651 2232 4556666666666666666666666666654433
No 112
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.53 E-value=2.8e-06 Score=71.56 Aligned_cols=95 Identities=11% Similarity=0.062 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
....-.+...+...|++++|..+|+-. ...| +..-|..|..+|...|++++|+..|.++..++|+++.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455556677788999999999999987 4555 56688899999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHh
Q 005265 606 ELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~~ 622 (705)
..|+.+.|++.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998875
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.53 E-value=4.3e-06 Score=71.99 Aligned_cols=106 Identities=11% Similarity=-0.006 Sum_probs=91.1
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005265 513 KYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIE 590 (705)
Q Consensus 513 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 590 (705)
.+++... .+.|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455443 345553 556788899999999999999987 4555 67788999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 591 PSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 591 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
|+++.++..++.++...|++++|...++...+.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998754
No 114
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.52 E-value=0.00024 Score=72.64 Aligned_cols=265 Identities=13% Similarity=0.074 Sum_probs=168.3
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhCCC-CcchhhHHH-HHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhH
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRESV-CPTHYTFGN-LLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFV 428 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 428 (705)
..|..+...+...|+++.+...+.+..+... .++...... ....+...|+++.+...+..+.+... .+...
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-------~~~~a 79 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-------RDLLA 79 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-------CcHHH
Confidence 3566666777778888887777666554321 222222211 22345677899999999999888753 44444
Q ss_pred HH---HHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHH
Q 005265 429 GN---SLIDMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCA 501 (705)
Q Consensus 429 ~~---~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~ 501 (705)
+. .+.......+..+.+.+.+...... ....+..+...+...|++++|...+++..+ ..|+. ..+..+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i 157 (355)
T cd05804 80 LKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHV 157 (355)
T ss_pred HHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHH
Confidence 44 2222223356666677776653322 233445556788899999999999999999 55665 567778888
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC--CHH-HH-H--HHHHHHHh
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPLK--DHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP--DAV-IW-G--SLLAACKV 572 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~-~~-~--~l~~~~~~ 572 (705)
+...|++++|..+++.........|+. ..|..+...+...|++++|..++++. ...| ... .. + .++.-+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 999999999999999886542222332 34667889999999999999999986 2233 211 11 1 22333444
Q ss_pred cCCHHHHHHH---HHHHHhhCCCCC--chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 573 HRNIMLGEYV---AKKLLEIEPSNS--GPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 573 ~g~~~~a~~~---~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
.|....+.+. ........|... ..-...+.++...|+.++|.+.++.+....
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5544333333 222111112221 222367778889999999999999987543
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=1.7e-07 Score=56.98 Aligned_cols=32 Identities=34% Similarity=0.513 Sum_probs=19.2
Q ss_pred CCCCchhhHHHHHHHHHccCChhhHHHHHhcc
Q 005265 49 QFASEIFIQNRLIDVYAKCGCLYGARKVFDKM 80 (705)
Q Consensus 49 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 80 (705)
|+.||..+||.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666555
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=1.1e-05 Score=80.73 Aligned_cols=244 Identities=12% Similarity=0.050 Sum_probs=152.7
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhc
Q 005265 360 YTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKC 439 (705)
Q Consensus 360 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 439 (705)
+.++|+..+|.-.|+..++.+ +-+...|.-|-......++-..|...+.+..+.. +.|..+.-+|.-.|...
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-------P~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-------PTNLEALMALAVSYTNE 366 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-------CccHHHHHHHHHHHhhh
Confidence 445555555555555555442 1133344444444445555555555555555554 35666666666667777
Q ss_pred CCHHHHHHHHHccCCCCh-hHHHHHH---------HHHHHcCChHHHHHHHHHHH-HCCCCCChhhHHHHHHHHhccCcH
Q 005265 440 GSVEDGCRIFETMVERDW-VSWNAMI---------VGCAQNGYGTEALGLFKKML-LCGEKPDHVTMIGVLCACSHAGLV 508 (705)
Q Consensus 440 g~~~~A~~~~~~~~~~~~-~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~ 508 (705)
|.-..|++.++.-..... ..|.... ..+..........++|-++. ..+..+|......|.-.|--.|.+
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 776777766665421100 0000000 11111222334455555544 445445666666666668888999
Q ss_pred HHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 005265 509 EEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDA-VIWGSLLAACKVHRNIMLGEYVAKK 585 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (705)
++|...|+.+. .++|+ ...||-|...++...+.++|+..|.++ .++|.- .++..|.-+|...|.+++|.+.|-.
T Consensus 447 draiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999886 45676 888999999999999999999999988 788874 4788888889999999999999999
Q ss_pred HHhhCCC-----CC-----chHHHHHHHHHhcCChhHHH
Q 005265 586 LLEIEPS-----NS-----GPYVLLSNMYAELGRWGEVV 614 (705)
Q Consensus 586 ~~~~~p~-----~~-----~~~~~l~~~~~~~g~~~~A~ 614 (705)
++.+.+. .. .+|..|=.++.-.++.|.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 9887544 11 24555555555556555333
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.45 E-value=1.7e-05 Score=75.57 Aligned_cols=145 Identities=12% Similarity=0.053 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCC---Chh---HHHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCh
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVER---DWV---SWNAMIVGCAQN--------GYGTEALGLFKKMLLCGEKPDH 492 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~ 492 (705)
..+..+..+|.+.|++++|...++++.+. +.. ++..+..++... |++++|.+.|+++.+ ..|+.
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 148 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNS 148 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCC
Confidence 46677889999999999999999998632 222 455566666654 788999999999998 45665
Q ss_pred hh-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC---CC-CHHHHHHH
Q 005265 493 VT-MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PM---QP-DAVIWGSL 566 (705)
Q Consensus 493 ~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l 566 (705)
.. ...+... .. .. ... ......+...|.+.|++++|...+++. .. .| ....+..+
T Consensus 149 ~~~~~a~~~~-~~---~~------~~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l 209 (235)
T TIGR03302 149 EYAPDAKKRM-DY---LR------NRL---------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARL 209 (235)
T ss_pred hhHHHHHHHH-HH---HH------HHH---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHH
Confidence 32 2111111 00 00 000 011235667788999999999988887 22 23 35678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 567 LAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
..++...|++++|...++.+....|+
T Consensus 210 ~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 210 VEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88899999999999988887766653
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.45 E-value=0.00044 Score=80.46 Aligned_cols=323 Identities=11% Similarity=-0.050 Sum_probs=192.3
Q ss_pred hhcCCChHHHHHHHhccCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC--C----CCCHh--HHHHHHHHHH
Q 005265 196 YGKCGRVSCARRVFDGMRE----RNIVSWNSLITCYEQNGPASDALEVFVRMMASG--I----EPDEV--TLASVVSACA 263 (705)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~--t~~~ll~~~~ 263 (705)
....|+++.+...++.++. .+..........+...|+++++...+......- . .|... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3456777777777776642 223333344445566788888888887765421 0 11111 1122223445
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCCC-------CC--cccHHHHHHHHH
Q 005265 264 SLAAFKEGLQIHARLMRCEKLRND----LVLGNALVDMYAKCGKLNEARCVFDRMPI-------RN--VVSETSMVSGYA 330 (705)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~ 330 (705)
..|+++.|...++...+.. ...+ ....+.+...+...|+++.|...+.+... +. ..+...+...+.
T Consensus 464 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6788888888888877632 1112 13445666777788888888888776541 11 123344555677
Q ss_pred hcCCHHHHHHHHHhcCC-------CC----eehHHHHHHHHHHcCChHHHHHHHHHhhhCC--CCcc--hhhHHHHHHHH
Q 005265 331 KASSVKSARLMFTKMLE-------RN----VVSWNALIAGYTQNGENEEALGLFRLLKRES--VCPT--HYTFGNLLNAC 395 (705)
Q Consensus 331 ~~~~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~~~ 395 (705)
..|+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 88888888887776522 11 1224445566777899999999988875431 1122 23344455566
Q ss_pred hhcccHHHHHHHHHHHHHhCCCCCCCCCCcH-h-HHHHHHHHHHhcCCHHHHHHHHHccCCCCh-------hHHHHHHHH
Q 005265 396 ANLADLQLGRQAHTHVVKHGLRFLSGEESDI-F-VGNSLIDMYMKCGSVEDGCRIFETMVERDW-------VSWNAMIVG 466 (705)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~ 466 (705)
...|+.+.|...+.......... +..... . .....+..+...|+.+.|...+.....+.. ..+..+..+
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNG--RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcc--cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 78899999999888876542200 000010 0 011122445567889999988877654311 113456667
Q ss_pred HHHcCChHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 005265 467 CAQNGYGTEALGLFKKMLLC----GEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKE 521 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (705)
+...|++++|...+++.... |..++. .+...+..++...|+.++|...+.+....
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78888888888888887653 323322 24555666777888888888888877653
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.44 E-value=3.2e-05 Score=85.03 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=171.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--------CCcccHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-eehHH
Q 005265 285 RNDLVLGNALVDMYAKCGKLNEARCVFDRMPI--------RNVVSETSMVSGYAKASSVKSARLMFTKMLER-N-VVSWN 354 (705)
Q Consensus 285 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~ 354 (705)
|.+...|-..+......++.+.|++++++... .-...|.++++....-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 55567777778888888888888888877652 13456777777777777777778888888663 3 34688
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHH
Q 005265 355 ALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLID 434 (705)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 434 (705)
.|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++..+.+.-.. ...+......++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-----~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-----QEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-----hhhHHHHHHHHH
Confidence 8999999999999999999999875 3356677888888999999999999999988876542 335667777888
Q ss_pred HHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhccCcHH
Q 005265 435 MYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH--VTMIGVLCACSHAGLVE 509 (705)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~ 509 (705)
+-.+.|+.+++..+|+.... +-...|+..|..-.++|+.+.+..+|++.+..++.|-. ..|...+..-...|+-+
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 88999999999999998863 35778999999999999999999999999998888765 35555554444444433
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=9.2e-06 Score=83.53 Aligned_cols=212 Identities=11% Similarity=0.006 Sum_probs=146.4
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC--CCChhHHHHHHHH
Q 005265 389 GNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV--ERDWVSWNAMIVG 466 (705)
Q Consensus 389 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~ 466 (705)
..+...+...|-...|..+++... .+.-++.+|...|+..+|..+..+-. .++...|..+.+.
T Consensus 402 ~~laell~slGitksAl~I~Erle---------------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 334445555666666666665432 34456667777777777766665443 3456666666666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChH
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLD 545 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 545 (705)
.....-+++|.++++..... .-..+.....+.++++++.+.|+.-. .+.|- ..+|-.+.-+..+.+++.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhH
Confidence 55555566666666553331 11111122234677888888887554 34443 667777778888889999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 546 EAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 546 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
.|.+.|... ...|| ...||++-.+|.+.|+..+|...+.++++.+-++..+|.+..-+..+.|.|++|.+.+.++.+.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 998888877 56775 5589999999999999999999999999988888888888888889999999999999888764
Q ss_pred CC
Q 005265 624 GV 625 (705)
Q Consensus 624 ~~ 625 (705)
..
T Consensus 617 ~~ 618 (777)
T KOG1128|consen 617 RK 618 (777)
T ss_pred hh
Confidence 33
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.41 E-value=2.2e-05 Score=71.14 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=91.2
Q ss_pred CCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 005265 489 KPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM--PMQPDAVIWGSL 566 (705)
Q Consensus 489 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 566 (705)
.|+......+-.++...|+-+....+...... ....|......++....+.|++.+|...+.+. .-+||...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44433224555566666777776666665432 22233455556777777778888888777776 334577777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 567 LAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
..+|-+.|+.++|...|.+++++.|+++.++++|+..|.-.|++++|..++......
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 777888888888888888888888877777788888888888888888777776644
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.39 E-value=3.2e-05 Score=70.48 Aligned_cols=153 Identities=8% Similarity=0.068 Sum_probs=117.6
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHH
Q 005265 432 LIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEE 510 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~ 510 (705)
-+-.|...|+++......+.+..+. ..+...++.++++..+++.++ ..|+. ..|..+...+...|++++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3467888999888765554433221 012235667888888888887 45554 688888899999999999
Q ss_pred HHHHHHHhHHhcCCCCC-hhHHHHHHHH-HHhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005265 511 GRKYFSSMSKEHGLAPL-KDHYTCMVDL-LGRAGC--LDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAK 584 (705)
Q Consensus 511 a~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (705)
|...|+...+ +.|+ ...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...++
T Consensus 92 A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998864 4565 7888888886 477787 59999999998 4556 56778888888999999999999999
Q ss_pred HHHhhCCCCCchH
Q 005265 585 KLLEIEPSNSGPY 597 (705)
Q Consensus 585 ~~~~~~p~~~~~~ 597 (705)
++++..|.+..-+
T Consensus 169 ~aL~l~~~~~~r~ 181 (198)
T PRK10370 169 KVLDLNSPRVNRT 181 (198)
T ss_pred HHHhhCCCCccHH
Confidence 9999988876543
No 123
>PLN02789 farnesyltranstransferase
Probab=98.38 E-value=0.00012 Score=71.82 Aligned_cols=210 Identities=13% Similarity=0.050 Sum_probs=130.2
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHccCC---CChhHHHHHHHHHHHcCCh--
Q 005265 400 DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCG-SVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYG-- 473 (705)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-- 473 (705)
..+.|......+++.. +.+..+|+....++...| ++++++..++++.+ ++..+|+.....+.+.|+.
T Consensus 52 ~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 52 RSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred CCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence 3444555555555444 234445554445555555 46777777766653 3444566554445555542
Q ss_pred HHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCh----H
Q 005265 474 TEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRA---GCL----D 545 (705)
Q Consensus 474 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~ 545 (705)
++++.+++++++ ..|. ..+|.....++...|+++++++.++++++. . .-+...|+....++.+. |.. +
T Consensus 125 ~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 125 NKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHH
Confidence 566777777776 4454 356777777777777888888888877654 1 22355666655555444 222 3
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-----------
Q 005265 546 EAKTLIEAM-PMQP-DAVIWGSLLAACKVH----RNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG----------- 608 (705)
Q Consensus 546 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------- 608 (705)
++++...++ ...| |...|+.+...+... ++..+|.+.+.++++.+|.++.+...|+++|....
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 556665443 4455 566788777777663 34566888888888888988888889999998632
Q ss_pred -------ChhHHHHHHHHH
Q 005265 609 -------RWGEVVRVRKLM 620 (705)
Q Consensus 609 -------~~~~A~~~~~~~ 620 (705)
..++|.++++.+
T Consensus 281 ~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccccccHHHHHHHHHHH
Confidence 235677777777
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.36 E-value=4.9e-05 Score=68.92 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=125.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCM 534 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 534 (705)
|... ..+-..+...|+-+....+...... ..|. ............+.|++.+|...+++... .-++|...|+.+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~l 140 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLL 140 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHH
Confidence 4444 5556677778888888877776554 2333 33455577788889999999999998853 345668999999
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhH
Q 005265 535 VDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGE 612 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 612 (705)
.-+|.+.|++++|..-|.+. .+.| ++...+++...+.-.|+.+.|+.++.......+.+..+-.+|+-+....|++++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 99999999999999888877 5555 566788888889999999999999999988888888888999999999999999
Q ss_pred HHHHHHH
Q 005265 613 VVRVRKL 619 (705)
Q Consensus 613 A~~~~~~ 619 (705)
|..+..+
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 9887654
No 125
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.35 E-value=0.0069 Score=64.64 Aligned_cols=159 Identities=11% Similarity=0.020 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 005265 459 SWNAMIVGCAQNGYGT---EALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCM 534 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 534 (705)
+-+.|+..+.+.++.. +|+-+++.-+. ..|.. .+-..+++.|+..|-...|.+.++.+--+ .+..|..-|- +
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~ 513 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-I 513 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-H
Confidence 4567777888777655 34444544444 33433 45566778888888888888888877443 5665543332 2
Q ss_pred HHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHHhcC
Q 005265 535 VDLLGRAGCLDEAKTLIEAMP-M-QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS----NSGPYVLLSNMYAELG 608 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g 608 (705)
...+...|++..+...++..- + ..+..----++....++|.+..-.+...---.+.-. -..+-....+.....+
T Consensus 514 ~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 514 FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345566777777776666541 0 011111111223334566665555443322222211 1122345666677778
Q ss_pred ChhHHHHHHHHHH
Q 005265 609 RWGEVVRVRKLMR 621 (705)
Q Consensus 609 ~~~~A~~~~~~~~ 621 (705)
+.++-...+..|.
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8888777777776
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.30 E-value=1.2e-05 Score=68.86 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=78.8
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 005265 524 LAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600 (705)
Q Consensus 524 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 600 (705)
..|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3454 455666777778888888888888776 3344 566777777778888888999998888888888888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 005265 601 SNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 601 ~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+.+|...|++++|...++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999988887753
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=0.00012 Score=79.33 Aligned_cols=140 Identities=12% Similarity=0.129 Sum_probs=108.1
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGV 498 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l 498 (705)
..++..+..|.....+.|..++|..+++...+ | +...+..++..+.+.+++++|+..+++... ..|+.. ....+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 45678888888888899999999999988763 3 556777788888899999999999998888 667775 55566
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM--PMQPDAVIWGSLL 567 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 567 (705)
..++...|++++|..+|+++... .|+ ...+..+..++-..|+.++|...|+.. ...|....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 66778889999999999988652 344 778888888888999999999988887 2334445554444
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=5e-05 Score=78.37 Aligned_cols=187 Identities=18% Similarity=0.164 Sum_probs=159.6
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCAC 502 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 502 (705)
+|-...-..+.+.+.+.|-...|..+|++. ..|.-.|.+|+..|+..+|..+..+-.+ -+||...|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 666777788899999999999999999975 4677888999999999999999988887 578889999999999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGE 580 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 580 (705)
-...-++.|.++++....+ .-..+.....+.++++++.+.|+.. .+.| ...+|..+..+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 8888899999998866432 1122223334579999999999875 5555 5678999988899999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 581 YVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 581 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
+.|...+.++|++...|+++..+|.+.|+..+|...+++..+.+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999998765
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.21 E-value=2.7e-05 Score=77.83 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=99.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKV 572 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 572 (705)
...++..+...++++.|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445566667778888888888888654 354 4455777888888888888888877 3334 56666666777999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 573 HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 573 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
.++++.|.++.+++.++.|++..+|..|+.+|.+.|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999886
No 130
>PLN02789 farnesyltranstransferase
Probab=98.21 E-value=0.00025 Score=69.67 Aligned_cols=187 Identities=9% Similarity=0.063 Sum_probs=136.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcc
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNG-YGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHA 505 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 505 (705)
.+-..+...++.++|+.+...+.+. +..+|+.....+...| ++++++..++++.+ ..|+. .+|..-...+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHc
Confidence 3334455567788899888887643 4556776666677777 57999999999998 45554 3565554455556
Q ss_pred CcH--HHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC--
Q 005265 506 GLV--EEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVH---RN-- 575 (705)
Q Consensus 506 g~~--~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~-- 575 (705)
|.. +++..+++.+.+ ..|. ..+|+....++.+.|++++|++.++++ ...| |..+|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 653 677888887764 3554 888999999999999999999999998 4344 677788777665544 22
Q ss_pred --HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc----CChhHHHHHHHHHHh
Q 005265 576 --IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL----GRWGEVVRVRKLMRK 622 (705)
Q Consensus 576 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~ 622 (705)
.+.......++++++|++..+|..+..++... ++..+|.+...+..+
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 25678888899999999999999999999883 455667777766543
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.0028 Score=62.98 Aligned_cols=143 Identities=17% Similarity=0.096 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMI-GVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVD 536 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 536 (705)
.+--....+...|++++|+..++.++. -.||...|. .....+...++.++|.+.++.+.. ..|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 333334445566777777777777776 456555443 334456677777777777776653 3555 555566677
Q ss_pred HHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHH
Q 005265 537 LLGRAGCLDEAKTLIEAM--PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVV 614 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 614 (705)
+|.+.|+..+|+..++.. ..+-|+..|..|..+|...|+..++.... +..|...|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 777777777777777766 23346667777777777777666554433 34455677777777
Q ss_pred HHHHHHHhC
Q 005265 615 RVRKLMRKR 623 (705)
Q Consensus 615 ~~~~~~~~~ 623 (705)
..+...+++
T Consensus 446 ~~l~~A~~~ 454 (484)
T COG4783 446 IFLMRASQQ 454 (484)
T ss_pred HHHHHHHHh
Confidence 777777654
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.0012 Score=59.99 Aligned_cols=116 Identities=12% Similarity=0.113 Sum_probs=75.2
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH----HhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLL----GRAGCLDEAKTLIEAM--PMQPDAVIWGSLLAACKVHRN 575 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~ 575 (705)
+.+..+.+-|.+.++.|.+ + .+..+.+.|..++ .-.+...+|.-+|+++ +..|++.+.+....+|...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 3344555555555555532 1 1233333333333 2334567777777777 256788888888888888888
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHH-HHHHHHH
Q 005265 576 IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVV-RVRKLMR 621 (705)
Q Consensus 576 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 621 (705)
+++|+.+++.++..+++++.+..+++.+-...|+-.++. +.+.+.+
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 888888888888888888888888877777777765543 4444444
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00035 Score=62.95 Aligned_cols=167 Identities=14% Similarity=0.144 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAM---IVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACS 503 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 503 (705)
.+|..++-+...+|+.+.|..+++.+..+=+.++... ...+-..|++++|+++++.+++.. +.|.+++..-+...-
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 5566677777888999999999988754322222221 223556899999999999999864 334567777777777
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHH
Q 005265 504 HAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVH---RNIML 578 (705)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~ 578 (705)
..|+.-+|++-+....+. +..|...|.-+.+.|...|++++|.-.++++ -++| ++..+..+...+... .+.+.
T Consensus 132 a~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 788888888888777664 5678999999999999999999999999998 3456 455556666664333 37788
Q ss_pred HHHHHHHHHhhCCCCCch
Q 005265 579 GEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 579 a~~~~~~~~~~~p~~~~~ 596 (705)
+.++|.+++++.|.+...
T Consensus 210 arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHHhChHhHHH
Confidence 999999999999966443
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.12 E-value=0.0021 Score=70.76 Aligned_cols=150 Identities=11% Similarity=0.073 Sum_probs=91.4
Q ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHH
Q 005265 386 YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIV 465 (705)
Q Consensus 386 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 465 (705)
..+..+..+|.+.|+.+++..+++.+++.. +.|+.+.|.+...|... ++++|.+++.+. +.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~ 177 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IY 177 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HH
Confidence 355555666666666666666666666665 36777888888888887 888888877664 33
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 005265 466 GCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLD 545 (705)
Q Consensus 466 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 545 (705)
.|...+++..+.++|.++.. ..|+...+ -.++.+.+....+..--..++--+...|...++++
T Consensus 178 ~~i~~kq~~~~~e~W~k~~~--~~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~ 240 (906)
T PRK14720 178 RFIKKKQYVGIEEIWSKLVH--YNSDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWD 240 (906)
T ss_pred HHHhhhcchHHHHHHHHHHh--cCcccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhh
Confidence 36667788888888888887 45554322 11222222222222223444555566666777777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005265 546 EAKTLIEAM-PMQP-DAVIWGSLLAACK 571 (705)
Q Consensus 546 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 571 (705)
++..+++.. ...| |.....-++.+|.
T Consensus 241 ~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 241 EVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 777777766 3333 4445555555544
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.11 E-value=0.0007 Score=74.32 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=111.8
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005265 424 SDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLC 500 (705)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 500 (705)
.+..++..+..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|.+++.+.+..
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence 3556778888999999999999999988864 3677888888888888 899999988887763
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLG 579 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 579 (705)
+...+++..+.++|..+.. ..|+ ...+-.+....... .+...-..++.-+-..|...++++++
T Consensus 179 -~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~------------~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 179 -FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGH------------REFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred -HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhh------------hccchhHHHHHHHHHHHhhhhhhhHH
Confidence 5566788888888888864 2444 33333333322222 11122344555566778889999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 580 EYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 580 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
..+++.+++.+|.|..+..-++.+|.
T Consensus 243 i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 99999999999999888888888876
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=0.00038 Score=68.93 Aligned_cols=119 Identities=20% Similarity=0.182 Sum_probs=105.9
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 577 (705)
.....|.+++|+..++.+.+. .|+ +..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 456789999999999998764 455 777788889999999999999999998 56776 667788888999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 578 LGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+|+.+++.....+|+++..|..|+..|..+|+..+|...+.+...
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887764
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=0.00013 Score=73.07 Aligned_cols=127 Identities=14% Similarity=0.105 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcc
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHA 505 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 505 (705)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++. .| |...+..-...|.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 445567777778899999999999999887777778888998999999999999999973 45 444566666678899
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 005265 506 GLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMPMQP 558 (705)
Q Consensus 506 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 558 (705)
++++.|+++.+++.. ..|+ ..+|..|+.+|.+.|++++|+..++.+|..|
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999998874 4676 7799999999999999999999999997544
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=7.9e-06 Score=50.64 Aligned_cols=35 Identities=46% Similarity=0.656 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH 492 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 492 (705)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999999873
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.04 E-value=8.2e-06 Score=50.56 Aligned_cols=35 Identities=43% Similarity=0.726 Sum_probs=32.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 005265 218 VSWNSLITCYEQNGPASDALEVFVRMMASGIEPDE 252 (705)
Q Consensus 218 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 252 (705)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.00043 Score=62.39 Aligned_cols=182 Identities=13% Similarity=0.116 Sum_probs=140.7
Q ss_pred cCCHHHHHHHHHccCC--------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH-HHHHhccCcH
Q 005265 439 CGSVEDGCRIFETMVE--------RDW-VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGV-LCACSHAGLV 508 (705)
Q Consensus 439 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~ 508 (705)
..+.++..+++..+.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+ .--+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4578888888887742 222 24556666777889999999999999886 3 665432222 2235567899
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005265 509 EEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM--PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKL 586 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 586 (705)
++|.++++.+..+ . +.|..++--=+.+.-..|+--+|++-+... .+..|...|.-+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d-d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED-D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc-C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999865 2 334667776677777788888888877766 45569999999999999999999999999999
Q ss_pred HhhCCCCCchHHHHHHHHHhcC---ChhHHHHHHHHHHhCC
Q 005265 587 LEIEPSNSGPYVLLSNMYAELG---RWGEVVRVRKLMRKRG 624 (705)
Q Consensus 587 ~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 624 (705)
+=+.|-++..+..++.++...| +++-|++++.+..+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988776 5667888888887644
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=0.00019 Score=61.35 Aligned_cols=113 Identities=12% Similarity=0.015 Sum_probs=87.4
Q ss_pred HHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 005265 479 LFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PM 556 (705)
Q Consensus 479 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 556 (705)
.+++.+. ..|+. .....+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 55654 34566667778889999999999887643 1234778888888999999999999988887 34
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 557 QP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 557 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
.| +...+..+...+...|++++|...++++++.+|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5677777888899999999999999999999998865
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.98 E-value=0.00025 Score=61.33 Aligned_cols=114 Identities=17% Similarity=0.106 Sum_probs=61.2
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHH
Q 005265 505 AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDA----VIWGSLLAACKVHRNIML 578 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~ 578 (705)
.++...+...++.+.+.++-.|- ....-.+...+...|++++|...|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555544221111 222233445555666666666666655 112322 233444555666677777
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 005265 579 GEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKL 619 (705)
Q Consensus 579 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 619 (705)
|...++.. ...+-.+..+..++++|.+.|++++|+..|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77666542 22333444566777777777777777777765
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.3e-05 Score=49.17 Aligned_cols=34 Identities=26% Similarity=0.606 Sum_probs=30.8
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 005265 217 IVSWNSLITCYEQNGPASDALEVFVRMMASGIEP 250 (705)
Q Consensus 217 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 250 (705)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.96 E-value=2.8e-05 Score=57.30 Aligned_cols=64 Identities=22% Similarity=0.260 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG-RWGEVVRVRKLMRK 622 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 622 (705)
+..+|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999999998875
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.6e-05 Score=48.84 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCC
Q 005265 117 CSWNSMVSGFAQHDRFSEALGYFVKMHSENFAL 149 (705)
Q Consensus 117 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 149 (705)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 146
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0028 Score=57.80 Aligned_cols=159 Identities=14% Similarity=0.057 Sum_probs=100.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----c
Q 005265 430 NSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSH----A 505 (705)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 505 (705)
..-...|+..|++++|.+.......-+....+ ...+.+..+.+-|.+.+++|++- -+..|.+.|..++.+ .
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 33344566777777777777663322333322 33455666777777777777762 244566656665543 4
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 005265 506 GLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM--PMQPDAVIWGSLLAACKVHRNI-MLGEYV 582 (705)
Q Consensus 506 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~a~~~ 582 (705)
+.+.+|.-+|+++..+ ..|+..+.+....++...|++++|..++++. ....++.+...++-.....|.. +--.+.
T Consensus 187 ek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 5677788888877542 5677777777777777888888888887776 3334666666666665556654 444566
Q ss_pred HHHHHhhCCCCCc
Q 005265 583 AKKLLEIEPSNSG 595 (705)
Q Consensus 583 ~~~~~~~~p~~~~ 595 (705)
..++....|.++.
T Consensus 265 l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 265 LSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHhcCCcchH
Confidence 7777777777653
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00034 Score=67.50 Aligned_cols=166 Identities=12% Similarity=-0.012 Sum_probs=119.4
Q ss_pred hHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH--HHhccCcHHHHHHHHHHhHHhcCCCCChhHHH--
Q 005265 458 VSWNAM-IVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLC--ACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYT-- 532 (705)
Q Consensus 458 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-- 532 (705)
.+|..+ ..++.-.|++++|...--..++ +.++. .+..+++ ++...++.+.|...|++.+ .+.|+...-.
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilk--ld~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILK--LDATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHh--cccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhH
Confidence 445444 3456667888888887777766 33322 2333333 3446778888888888665 4456533221
Q ss_pred -----------HHHHHHHhcCChHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 533 -----------CMVDLLGRAGCLDEAKTLIEAM-PMQ-----PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 533 -----------~l~~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
-=.+-..+.|++.+|.+.|.+. .+. |+...|........+.|+.++|+.-.+++++++|.-..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 1233456889999999999987 444 45556666667788899999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQP 629 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 629 (705)
+|..-+.++...++|++|.+-+++..+....+++
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~ 356 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEI 356 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Confidence 9999999999999999999999988765444333
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.92 E-value=1.4e-05 Score=61.57 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHH
Q 005265 541 AGCLDEAKTLIEAM-PMQP---DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRV 616 (705)
Q Consensus 541 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 616 (705)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666665 1222 344555567777778888888888877 666666666666778888888888888888
Q ss_pred HHH
Q 005265 617 RKL 619 (705)
Q Consensus 617 ~~~ 619 (705)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.91 E-value=0.00018 Score=72.45 Aligned_cols=84 Identities=15% Similarity=0.095 Sum_probs=45.2
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHH
Q 005265 538 LGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVR 615 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 615 (705)
+...|++++|+++|+++ ...| +...|..+..++...|++++|...++++++++|+++..|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34445555555555554 2233 334444445555555555555555555555555555555555555555555555555
Q ss_pred HHHHHH
Q 005265 616 VRKLMR 621 (705)
Q Consensus 616 ~~~~~~ 621 (705)
.+++..
T Consensus 92 ~~~~al 97 (356)
T PLN03088 92 ALEKGA 97 (356)
T ss_pred HHHHHH
Confidence 555554
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=7.8e-05 Score=69.03 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=59.0
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIML 578 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 578 (705)
..+.+++.+|+..|..++ .+.|. ...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 556667777777777665 34554 555555566777777777777666655 45553 4466667777777777777
Q ss_pred HHHHHHHHHhhCCCCCc
Q 005265 579 GEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 579 a~~~~~~~~~~~p~~~~ 595 (705)
|++.|+++++++|++..
T Consensus 168 A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHHhhhccCCCcHH
Confidence 77777777777777654
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.90 E-value=0.00014 Score=57.57 Aligned_cols=92 Identities=24% Similarity=0.255 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005265 531 YTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG 608 (705)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 608 (705)
+..+...+...|++++|...+++. ...| +...+..+...+...|+++.|.+.++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667778888888888888876 3344 34667777777888899999999999999999988888899999999999
Q ss_pred ChhHHHHHHHHHHh
Q 005265 609 RWGEVVRVRKLMRK 622 (705)
Q Consensus 609 ~~~~A~~~~~~~~~ 622 (705)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999999888764
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.87 E-value=0.00022 Score=59.39 Aligned_cols=94 Identities=17% Similarity=0.076 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CchHHHHH
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN---SGPYVLLS 601 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 601 (705)
++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...+++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555566666666666666655 22232 2344455666666777777777777777666654 33466667
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 005265 602 NMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777766654
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.85 E-value=0.00081 Score=58.14 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHH
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH----VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL--KDHYTCM 534 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l 534 (705)
..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+... ...|. ......|
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 3334443 356666666666666663 2322 22333445566667777777777766543 22222 1233345
Q ss_pred HHHHHhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005265 535 VDLLGRAGCLDEAKTLIEAMPMQ-PDAVIWGSLLAACKVHRNIMLGEYVAKKL 586 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 586 (705)
..++...|++++|+..++..... .....+......+...|+.++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 56666777777777777665322 23344445555577777777777777654
No 154
>PRK15331 chaperone protein SicA; Provisional
Probab=97.82 E-value=0.00053 Score=58.29 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=81.3
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 005265 523 GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVL 599 (705)
Q Consensus 523 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 599 (705)
|+.++ ....-...--+-..|++++|..+|+-+ -.. -+..-|..|..+|...+++++|...|..+..++++|+.++..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44444 222333344456789999999999876 223 356678889989999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 005265 600 LSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+.+|...|+.+.|+..|+...+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998875
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.80 E-value=0.00042 Score=57.65 Aligned_cols=103 Identities=11% Similarity=0.021 Sum_probs=65.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSLLA 568 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 568 (705)
+......+...|++++|.+.|+.+.+...-.|. ...+..+..++.+.|++++|...|+.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344445555666666666666666543211111 334555667777777777777777765 22233 456677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 005265 569 ACKVHRNIMLGEYVAKKLLEIEPSNSGPY 597 (705)
Q Consensus 569 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 597 (705)
++...|+.++|...++++++..|++....
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 78888888888888888888888876543
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.73 E-value=8.5e-05 Score=53.88 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=47.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+...+...|++++|.+.|+++++.+|+++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455778888888888888888888888888888888888888888888888888653
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.73 E-value=0.0015 Score=68.76 Aligned_cols=139 Identities=13% Similarity=0.055 Sum_probs=63.9
Q ss_pred CCChhHHHHHHHHHHHc--C---ChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhcc--------CcHHHHHHHHHHhH
Q 005265 454 ERDWVSWNAMIVGCAQN--G---YGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHA--------GLVEEGRKYFSSMS 519 (705)
Q Consensus 454 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~--------g~~~~a~~~~~~~~ 519 (705)
..|...|...+.+.... + ....|..+|++.++ ..|+.. .+..+..++... .++..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 44677777777764432 2 36678888888888 677753 333332222111 01122222222211
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 520 KEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 520 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.......+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 10001112333444433333444555555444444 3344444444444444444555555555555554444444
No 158
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.73 E-value=9.8e-05 Score=54.16 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=45.9
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
...|++++|.+.++++++.+|++..++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999987764
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.72 E-value=0.00044 Score=61.91 Aligned_cols=82 Identities=15% Similarity=0.047 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
...+..+...|.+.|++++|...|++. ...|+ ...+..+...+...|++++|...++++++..|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445666677777788888888887766 22222 3577778888899999999999999999999999888889999
Q ss_pred HHHhcCC
Q 005265 603 MYAELGR 609 (705)
Q Consensus 603 ~~~~~g~ 609 (705)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 9988776
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.0003 Score=65.32 Aligned_cols=101 Identities=20% Similarity=0.132 Sum_probs=84.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRA 541 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 541 (705)
..-+.+.+++.+|+..|.+.++ +.|+. +-|..-..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHcc
Confidence 3457788999999999999999 77765 566777889999999999998888665 56787 88999999999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005265 542 GCLDEAKTLIEAM-PMQPDAVIWGSLLAA 569 (705)
Q Consensus 542 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 569 (705)
|++++|++.|++. .+.|+..+|-.-+..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999999987 788988777554444
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.71 E-value=0.00039 Score=61.98 Aligned_cols=94 Identities=12% Similarity=-0.118 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
...|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|++++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 556677777888889999999988887 33332 3478888888999999999999999999999999888889998
Q ss_pred HHH-------hcCChhHHHHHHHHHH
Q 005265 603 MYA-------ELGRWGEVVRVRKLMR 621 (705)
Q Consensus 603 ~~~-------~~g~~~~A~~~~~~~~ 621 (705)
++. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 988 8888887766666543
No 162
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.71 E-value=0.063 Score=53.13 Aligned_cols=115 Identities=15% Similarity=0.095 Sum_probs=78.3
Q ss_pred hccCc-HHHHHHHHHHhHHhcCCCC-ChhHHHHHH----HHHHhc---CCh---HHHHHHHHhCCCCC----CHHHHHHH
Q 005265 503 SHAGL-VEEGRKYFSSMSKEHGLAP-LKDHYTCMV----DLLGRA---GCL---DEAKTLIEAMPMQP----DAVIWGSL 566 (705)
Q Consensus 503 ~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~----~~~~~~---g~~---~~A~~~~~~~~~~p----~~~~~~~l 566 (705)
-+.|. -+.|+++++.+.+- .| |..+-|.+. ..|..+ ..+ =.-..++++.++.| +...-|.|
T Consensus 390 W~~g~~dekalnLLk~il~f---t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQF---TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HhcCCccHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 34444 67788888777532 33 333333222 122211 111 12233455556555 45577888
Q ss_pred HHH--HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 567 LAA--CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 567 ~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
.+| +..+|++.++.-.-.-+.++.| ++.+|..+|-++....+|++|..++..++
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 888 6789999999999999999999 77889999999999999999999998765
No 163
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.69 E-value=0.00033 Score=67.36 Aligned_cols=262 Identities=13% Similarity=0.081 Sum_probs=157.4
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCC---CcchhhHHHHHHHHhhcccHHHHHHHHHHHHH--hCCCCCCCCCCcHhHHHHH
Q 005265 358 AGYTQNGENEEALGLFRLLKRESV---CPTHYTFGNLLNACANLADLQLGRQAHTHVVK--HGLRFLSGEESDIFVGNSL 432 (705)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~l 432 (705)
.-+|+.|+....+.+|+..++.|. +.=+..|..+-++|.-.+++++|.+++..=+. .-+ +...-.......|
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l---gdklGEAKssgNL 101 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL---GDKLGEAKSSGNL 101 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh---cchhccccccccc
Confidence 346777777777777777777662 12233455556666777777777777643221 100 0001112223334
Q ss_pred HHHHHhcCCHHHHHHHHHccCC-------C--ChhHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 005265 433 IDMYMKCGSVEDGCRIFETMVE-------R--DWVSWNAMIVGCAQNGY--------------------GTEALGLFKKM 483 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m 483 (705)
.+.+--.|.+++|.-.-.+-.. + ....+-.+...|...|+ .+.|.++|.+=
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 4555556666666544332211 0 11223334445544431 23344444432
Q ss_pred HH----CCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHh---HHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 484 LL----CGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSM---SKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 484 ~~----~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
++ .|-.. --..|..+...|.-.|+++.|+..++.- .+++|-+.. ...++.|.+++.-.|+++.|.+.|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 22 11111 1134566666666788999998876642 234444333 567888999999999999999998864
Q ss_pred -------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 005265 555 -------P-MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI------EPSNSGPYVLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 555 -------~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
+ -.....+..+|...|.-..+++.|+.++.+=+.+ ......++.+|++.|...|..++|+.+.+.-
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 1 1123456678888888888999999988876654 1234467999999999999999999888776
Q ss_pred Hh
Q 005265 621 RK 622 (705)
Q Consensus 621 ~~ 622 (705)
.+
T Consensus 342 l~ 343 (639)
T KOG1130|consen 342 LR 343 (639)
T ss_pred HH
Confidence 54
No 164
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.66 E-value=0.087 Score=53.35 Aligned_cols=161 Identities=14% Similarity=0.086 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 005265 457 WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMV 535 (705)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 535 (705)
..+|-..++.-.+..-...|..+|.+..+.+..+ +.....+++.-++ .++.+-|.++|+.-.+.+|- ++.--...+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~Yl 442 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYL 442 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHH
Confidence 3467788888888888999999999999998888 4556667776555 57899999999988776543 344456678
Q ss_pred HHHHhcCChHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC----chHHHHHHHHHh
Q 005265 536 DLLGRAGCLDEAKTLIEAM---PMQP--DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS----GPYVLLSNMYAE 606 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~ 606 (705)
+-+.+.++-..|..+|++. .+.| ...+|..++..-..-|+...+.++-++.....|.+. ..-..+.+-|.-
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~ 522 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGI 522 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhh
Confidence 8889999999999999988 2334 356999999999999999999999999887766221 123455666666
Q ss_pred cCChhHHHHHHHHH
Q 005265 607 LGRWGEVVRVRKLM 620 (705)
Q Consensus 607 ~g~~~~A~~~~~~~ 620 (705)
.+.+..-..-++.+
T Consensus 523 ~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 523 LDLYPCSLDELKFL 536 (656)
T ss_pred cccccccHHHHHhh
Confidence 66655444433333
No 165
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=8.4e-05 Score=44.36 Aligned_cols=31 Identities=32% Similarity=0.658 Sum_probs=22.7
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHhHhCCC
Q 005265 117 CSWNSMVSGFAQHDRFSEALGYFVKMHSENF 147 (705)
Q Consensus 117 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 147 (705)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777653
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=7.6e-05 Score=44.56 Aligned_cols=31 Identities=48% Similarity=0.694 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 005265 218 VSWNSLITCYEQNGPASDALEVFVRMMASGI 248 (705)
Q Consensus 218 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 248 (705)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887664
No 167
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.59 E-value=0.13 Score=53.58 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=76.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHH
Q 005265 219 SWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMY 298 (705)
Q Consensus 219 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 298 (705)
+|+.+...++....+++|.+.|..-... ...+.++.+...+++-..+... ++.+....-.+.+++
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~------Lpe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLART------LPEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHh------cCcccchHHHHHHHH
Confidence 4666666666666666666665543210 1123333444444433322222 566666777777777
Q ss_pred HhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHH--------------HHHHHHHcC
Q 005265 299 AKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNA--------------LIAGYTQNG 364 (705)
Q Consensus 299 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~g 364 (705)
.+.|.-++|.+.|-+-..|. +.+..|...+++.+|.++-++..-|.+.+.-+ -|..+.+.|
T Consensus 863 ~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~ 937 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAG 937 (1189)
T ss_pred HhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcc
Confidence 77777777776665544332 23455666677777777776665544433211 233444556
Q ss_pred ChHHHHHHHHHhhh
Q 005265 365 ENEEALGLFRLLKR 378 (705)
Q Consensus 365 ~~~~A~~~~~~m~~ 378 (705)
++-+|.+++.+|-+
T Consensus 938 ~~~daarll~qmae 951 (1189)
T KOG2041|consen 938 RHLDAARLLSQMAE 951 (1189)
T ss_pred cchhHHHHHHHHhH
Confidence 65566666666543
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0028 Score=59.49 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=85.6
Q ss_pred CC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHH-hc--CCHHHHHHHHHHHHhhCCCCCchHH
Q 005265 525 AP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAACK-VH--RNIMLGEYVAKKLLEIEPSNSGPYV 598 (705)
Q Consensus 525 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~-~~--g~~~~a~~~~~~~~~~~p~~~~~~~ 598 (705)
.| |...|-.|...|.+.|+++.|..-|... .+. +++..+..+..++. +. .+..++..++++++..+|.+..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 35 5899999999999999999999999988 444 45667777777733 33 3567899999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 599 LLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
.|+..+...|++.+|...++.|.+...
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999997543
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.57 E-value=0.00099 Score=67.17 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=70.9
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 577 (705)
.+...|++++|+..|+++++. .|+ ...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344566777777777766542 343 556666677777777777777777766 4444 4556777777788888888
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 005265 578 LGEYVAKKLLEIEPSNSGPYVLLSNMYAEL 607 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 607 (705)
+|...|+++++++|++......+..+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888888877666665554433
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.57 E-value=0.021 Score=55.73 Aligned_cols=110 Identities=13% Similarity=0.160 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCC-----cchh-hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCc
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLKRESVC-----PTHY-TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESD 425 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 425 (705)
.+..+...+.+.|++++|+.+|++....-.. ++.. .|...+-++...||+-.|...++........+.+ ...
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~--s~E 234 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS--SRE 234 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT--SHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--cHH
Confidence 4566778899999999999999988764322 2222 2333444666778999999999988755432211 223
Q ss_pred HhHHHHHHHHHHhc--CCHHHHHHHHHccCCCChhHHHHH
Q 005265 426 IFVGNSLIDMYMKC--GSVEDGCRIFETMVERDWVSWNAM 463 (705)
Q Consensus 426 ~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~l 463 (705)
......|+++|-.. ..++.|+.-|+.+.+-|..--..|
T Consensus 235 ~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 235 YKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence 45667778887653 457888888888877665544444
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.52 E-value=0.00032 Score=52.28 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=52.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 567 LAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
...+.+.++++.|.++++++++++|+++..+..++.++.+.|++++|.+.+++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3467889999999999999999999999999999999999999999999999988644
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.49 E-value=0.0036 Score=55.95 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=86.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD--HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYT 532 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 532 (705)
....+..+...+...|++++|...|++.++....|. ...+..+...+.+.|++++|...+++..+. .|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 444667777777788888888888888876433222 246667777777888888888888776543 343 55566
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 533 CMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
.+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666777777665554333221 123677888999999989887 5566666655554
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.44 E-value=0.00042 Score=50.15 Aligned_cols=61 Identities=21% Similarity=0.220 Sum_probs=48.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 534 MVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456678888888888888887 4456 466788888889999999999999999999999874
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.44 E-value=0.0069 Score=58.81 Aligned_cols=135 Identities=16% Similarity=0.143 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCA-CSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVD 536 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 536 (705)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467788888888888999999999998532 2233444444444 333567777999999998875 456777888999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 537 LLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
.+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+...++.+++.+..|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999987 32333 349999999999999999999999999999888544
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.42 E-value=0.00047 Score=52.99 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=41.2
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHH
Q 005265 470 NGYGTEALGLFKKMLLCGE-KPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEA 547 (705)
Q Consensus 470 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 547 (705)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++.. ...|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566666666666666321 112333444566666666666666666651 11222 23333445566666666666
Q ss_pred HHHHHh
Q 005265 548 KTLIEA 553 (705)
Q Consensus 548 ~~~~~~ 553 (705)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.42 E-value=0.02 Score=55.94 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=64.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHH
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHA-GLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLL 538 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~ 538 (705)
+..|...|++..|-+.+.++-+ .|... |++++|.+.|++...-+..... ..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 4556666666666555544433 45455 6666666666665433221111 33455666778
Q ss_pred HhcCChHHHHHHHHhCC---CC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 539 GRAGCLDEAKTLIEAMP---MQ-----PDAV-IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 539 ~~~g~~~~A~~~~~~~~---~~-----p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.+.|++++|.++|++.. .. .+.. .+...+-++...||...|.+.+++..+.+|.-.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 88888888888887751 11 1111 122223345667888888888888888877543
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.40 E-value=0.023 Score=48.95 Aligned_cols=133 Identities=11% Similarity=0.009 Sum_probs=100.8
Q ss_pred CCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHH
Q 005265 488 EKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP---DAVIW 563 (705)
Q Consensus 488 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 563 (705)
..|+...-..+..++...|+..+|...|++...- -+..|....-.+.++....+++.+|...++.. ...| ++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 5677777777888888999999999999887542 23445777788888888899999999888876 2222 22233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
..+...+...|.+..|+..|+.++..-|+- ..-...+..+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 456677888999999999999999887764 3467788889999999888877666654
No 178
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.39 E-value=0.00016 Score=43.85 Aligned_cols=33 Identities=33% Similarity=0.627 Sum_probs=31.0
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCChhHHHH
Q 005265 583 AKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVR 615 (705)
Q Consensus 583 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 615 (705)
|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 788999999999999999999999999999863
No 179
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.39 E-value=0.0021 Score=50.53 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=42.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 577 (705)
.+...|++++|...++.+.+. .|+ ...+..+...+...|++++|.+.++.. ...| +..++..+...+...|+++
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 333444444444444444321 121 233444444555555555555555443 1122 2335555555566666666
Q ss_pred HHHHHHHHHHhhCC
Q 005265 578 LGEYVAKKLLEIEP 591 (705)
Q Consensus 578 ~a~~~~~~~~~~~p 591 (705)
.|...+.++++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 66666666665554
No 180
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.37 E-value=0.16 Score=49.36 Aligned_cols=244 Identities=16% Similarity=0.152 Sum_probs=170.0
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCcchh--hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHH
Q 005265 360 YTQNGENEEALGLFRLLKRESVCPTHY--TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYM 437 (705)
Q Consensus 360 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 437 (705)
-.-.|+++.|.+-|+.|... |... .+..|.-.-.+.|+.+.|+++-........ .-.....+.++..+
T Consensus 130 al~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-------~l~WA~~AtLe~r~ 199 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-------QLPWAARATLEARC 199 (531)
T ss_pred HHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-------CCchHHHHHHHHHH
Confidence 34579999999999999852 3222 233344444677888989888887776653 45567888999999
Q ss_pred hcCCHHHHHHHHHccC-----CCChh--HHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccC
Q 005265 438 KCGSVEDGCRIFETMV-----ERDWV--SWNAMIVGCA---QNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAG 506 (705)
Q Consensus 438 ~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g 506 (705)
..|+++.|+++.+.-. ++++. .--.|+.+-+ -..+...|...-.+..+ +.||.. .-.....++.+.|
T Consensus 200 ~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 200 AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDG 277 (531)
T ss_pred hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhcc
Confidence 9999999999998654 34433 1222322211 12346667666666665 788875 4555667899999
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005265 507 LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM----PMQP-DAVIWGSLLAACKVHRNIMLGEY 581 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 581 (705)
+..++-.+++.+.+. .|.+..+... .+.+.|+. ++.-+++. .++| +..+...+..+....|++..|..
T Consensus 278 ~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 278 NLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred chhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 999999999988754 5666554432 34455553 33333322 2455 45577777888889999999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 005265 582 VAKKLLEIEPSNSGPYVLLSNMYAEL-GRWGEVVRVRKLMRKR 623 (705)
Q Consensus 582 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 623 (705)
-.+.+....|.. ++|..|+++-... |+-.++...+-+..+.
T Consensus 351 ~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 351 KAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 999999999976 5699999997665 9999999998777654
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.33 E-value=0.0052 Score=54.76 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 005265 457 WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD--HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTC 533 (705)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 533 (705)
...|..+...+...|++++|+..|++.+.....|. ..++..+...+...|++++|+..++.... +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34556666666667777777777777665322221 12555566666666666666666665543 2333 334444
Q ss_pred HHHHHH
Q 005265 534 MVDLLG 539 (705)
Q Consensus 534 l~~~~~ 539 (705)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 444444
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.30 E-value=0.0074 Score=63.67 Aligned_cols=134 Identities=15% Similarity=0.034 Sum_probs=98.2
Q ss_pred CCCCChhhHHHHHHHHhc-----cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc--------CChHHHHHHHH
Q 005265 487 GEKPDHVTMIGVLCACSH-----AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRA--------GCLDEAKTLIE 552 (705)
Q Consensus 487 g~~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 552 (705)
+...|...|...+++... .+....|..+|+++.+ ..|+ ...|..+..+|... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345566788888887543 2347799999998874 5788 56666655544322 22344555554
Q ss_pred hC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 553 AM---P-MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 553 ~~---~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
+. + ...+...+.++.-.....|++++|...++++++++|+ ...|..++.++...|+.++|.+.+++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 43 1 2335667777766677789999999999999999995 6789999999999999999999999987644
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.28 E-value=0.22 Score=49.04 Aligned_cols=122 Identities=20% Similarity=0.181 Sum_probs=88.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcH
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLV 508 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 508 (705)
.+..+.-+...|+...|.++-.+..-|+..-|-..+.+++..++|++-.++... +-+++-|..++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566778888899998888888888899999999999999877765432 22447788889999999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005265 509 EEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAAC 570 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 570 (705)
.+|..+...+. +..-+..|.++|++.+|.+.--+.+ |...+..+..-|
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 99888877531 2445778889999998877755543 444444444433
No 184
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.26 E-value=0.32 Score=50.41 Aligned_cols=184 Identities=13% Similarity=0.084 Sum_probs=130.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVL 499 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 499 (705)
+++...|...++.-.+.|+.+...-+|++..-| -...|-..+.-....|+.+-|..++....+-.++-...+-..-.
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 456678888899999999999999999998765 34467666666667799988888887766643332223322223
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHHHH----HHHHH-
Q 005265 500 CACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAK---TLIEAM-PMQPDAVIWG----SLLAA- 569 (705)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~----~l~~~- 569 (705)
.-+-..|+.+.|..+++.+..+ . |+ ...-..-+....+.|..+.+. +++... +.+-+..+.. ....-
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 3355678999999999999765 3 66 444444456778889988888 555544 2222222222 22222
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 570 CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 570 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
+...++.+.|..++.++.+..|++-..|..+++.....+.
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 4567899999999999999999999999999999877763
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.24 E-value=0.0053 Score=50.21 Aligned_cols=88 Identities=17% Similarity=0.022 Sum_probs=59.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CCchHHHHHHHHH
Q 005265 534 MVDLLGRAGCLDEAKTLIEAM---PMQPD--AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS---NSGPYVLLSNMYA 605 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 605 (705)
+..++...|+.++|+.+|++. +.... ...+-.+.+.+...|++++|..++++.+...|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345566677777777777765 22221 335556677788888888888888888877777 5555566777788
Q ss_pred hcCChhHHHHHHHHHH
Q 005265 606 ELGRWGEVVRVRKLMR 621 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~ 621 (705)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8888888887775544
No 186
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.21 E-value=0.0059 Score=47.91 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHccC--------ChHHHHHHHHHHHHcCCCCCChh
Q 005265 219 SWNSLITCYEQNGPASDALEVFVRMMASGI-EPDEVTLASVVSACASLA--------AFKEGLQIHARLMRCEKLRNDLV 289 (705)
Q Consensus 219 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 289 (705)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+...+.+|+.++..+ ++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~-lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNK-LKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhc-cCCcHH
Confidence 344556677777999999999999999999 999999999999887653 3446788899999888 999999
Q ss_pred HHHHHHHHHHh
Q 005265 290 LGNALVDMYAK 300 (705)
Q Consensus 290 ~~~~li~~~~~ 300 (705)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999887765
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.20 E-value=0.003 Score=60.10 Aligned_cols=94 Identities=13% Similarity=0.079 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHH
Q 005265 529 DHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDA----VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS---GPYVLL 600 (705)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l 600 (705)
..|...+..+.+.|++++|...|+.+ ...|+. ..+..+...+...|++++|...|+++++..|+++ .++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555555667777777777766 223432 3556677777788888888888888887776644 345556
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 005265 601 SNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 601 ~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+.++...|++++|.++++++.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7778888888888888887764
No 188
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.16 Score=49.75 Aligned_cols=87 Identities=11% Similarity=-0.044 Sum_probs=52.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---CCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 005265 465 VGCAQNGYGTEALGLFKKMLLC---GEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGR 540 (705)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 540 (705)
.-..+.|++..|.+.|.+.+.. ..+|+...|.....+..+.|+.++|+.-.+... .+.|. ...|-.-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHH
Confidence 3445677777777777777762 223333445555566677777777777766553 34443 3334444455556
Q ss_pred cCChHHHHHHHHhC
Q 005265 541 AGCLDEAKTLIEAM 554 (705)
Q Consensus 541 ~g~~~~A~~~~~~~ 554 (705)
.++|++|.+-|+..
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777777665
No 189
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.19 E-value=0.27 Score=48.36 Aligned_cols=82 Identities=9% Similarity=0.109 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHH
Q 005265 292 NALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALG 371 (705)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 371 (705)
+..+.-+...|+...|.++-.+..-|+..-|-..+.+|+..++|++-.++... .++++-|..++..|.+.|+..+|..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 33344555566666666666666555555555555555555555555544332 3445555555555555555555555
Q ss_pred HHHH
Q 005265 372 LFRL 375 (705)
Q Consensus 372 ~~~~ 375 (705)
+..+
T Consensus 259 yI~k 262 (319)
T PF04840_consen 259 YIPK 262 (319)
T ss_pred HHHh
Confidence 5443
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.17 E-value=0.005 Score=62.15 Aligned_cols=118 Identities=13% Similarity=0.132 Sum_probs=88.9
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHhccCC-CC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHH
Q 005265 183 SSDVYMGSALIDMYGKCGRVSCARRVFDGMRE-RN-----IVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLA 256 (705)
Q Consensus 183 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 256 (705)
+.+......+++......+++.+..++.+... |+ ..|..++|+.|.+.|..+.++++++.=..-|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 44555566666766666777777777766653 21 2345688999999999999999999888899999999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhc
Q 005265 257 SVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKC 301 (705)
Q Consensus 257 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 301 (705)
.++..+.+.|++..|.++...++..+ ...+..++..-+..+.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQE-EFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888877 555556655555555554
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.14 E-value=0.00061 Score=49.87 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=30.8
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 005265 504 HAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIW 563 (705)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 563 (705)
..|++++|.++|+.+... .| +...+..++.+|.+.|++++|.++++++ ...|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 456666666666666543 23 3555555666666666666666666655 334443333
No 192
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.13 E-value=0.061 Score=55.40 Aligned_cols=105 Identities=19% Similarity=0.260 Sum_probs=61.0
Q ss_pred cHHHHHHHHHhCCChHHHHHHH---------HHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHH--HHHHHHcCCCCCh
Q 005265 118 SWNSMVSGFAQHDRFSEALGYF---------VKMHSENFALSEYSFGSALSACAGSVDFKMGTQV--HALLSKSRYSSDV 186 (705)
Q Consensus 118 ~~~~li~~~~~~~~~~~a~~~~---------~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~ 186 (705)
.+.+-+-.|...|.+++|..+- +.+... ..+...|+..=++|.+.++..--+-+ ++++.++|-.|+.
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 3444445556666666665431 111111 12334455556667666665544333 4466777777765
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005265 187 YMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMA 245 (705)
Q Consensus 187 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 245 (705)
.. +...++-.|++.+|.++|.+ +|.-..|+++|.+|+-
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRM 673 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRM 673 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHH
Confidence 53 33456667888888888755 6677777777777653
No 193
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.13 E-value=0.0022 Score=63.99 Aligned_cols=65 Identities=11% Similarity=-0.088 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP---YVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+...|+.+..+|...|++++|...|+++++++|++..+ |.+++.+|.++|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566666666667777777777777777777766533 667777777777777777777666653
No 194
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.10 E-value=0.16 Score=50.48 Aligned_cols=165 Identities=16% Similarity=0.109 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhhHH
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVER-------DWVSWNAMIVGCAQ---NGYGTEALGLFKKMLLCGEKPDHVTMI 496 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~ 496 (705)
.+...++-.|....+++.-+++.+.+... ....-....-++.+ .|+.++|++++..+....-.++..||.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34445666788999999999999988753 22223334556667 889999999999977766777778887
Q ss_pred HHHHHHhc---------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-hH---HHHHHH---Hh-C-----
Q 005265 497 GVLCACSH---------AGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGC-LD---EAKTLI---EA-M----- 554 (705)
Q Consensus 497 ~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~-~----- 554 (705)
.+.+.|-. ....++|+..|. +.+.+.|+..+--.++-.+.-.|. .+ +..++- .. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~---kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYR---KGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHH---HHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 77765532 334778888887 445666764433333333333443 11 222222 11 1
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 555 -PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 555 -~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.-..|...+.+++.++.-.|+++.|.+.++++.++.|+..
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1234666777888899999999999999999999987764
No 195
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0044 Score=60.38 Aligned_cols=63 Identities=16% Similarity=0.072 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 560 AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
..+++.|..+|.+.+++..|++...++++++|+|..+...-+.+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 446777888889999999999999999999999999999999999999999999999999985
No 196
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.09 E-value=0.36 Score=47.89 Aligned_cols=93 Identities=16% Similarity=0.269 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCCh---hhHHHHHHHHHhcCChhHHHHHHhcC
Q 005265 35 VSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNV---FTWNSIITGLLKWGFIDDASRLFASM 111 (705)
Q Consensus 35 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~ 111 (705)
+.+-+++-+++... +-|...|-+|+.-|...|..++.++++++|..|-+ .+|...+++=....++.....+|.+.
T Consensus 25 ~~D~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rC 102 (660)
T COG5107 25 HGDELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRC 102 (660)
T ss_pred CchHHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHH
Confidence 33445777777654 57888999999999999999999999999998754 47888887777778888888888776
Q ss_pred CCC--CcccHHHHHHHHHhC
Q 005265 112 PER--DQCSWNSMVSGFAQH 129 (705)
Q Consensus 112 ~~~--~~~~~~~li~~~~~~ 129 (705)
... +...|..-+..-.+-
T Consensus 103 L~k~l~ldLW~lYl~YIRr~ 122 (660)
T COG5107 103 LKKSLNLDLWMLYLEYIRRV 122 (660)
T ss_pred HhhhccHhHHHHHHHHHHhh
Confidence 543 555666666555443
No 197
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.08 E-value=0.0089 Score=60.42 Aligned_cols=120 Identities=15% Similarity=0.077 Sum_probs=86.1
Q ss_pred CCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHc--CCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC----CCcch
Q 005265 146 NFALSEYSFGSALSACAGSVDFKMGTQVHALLSKS--RYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE----RNIVS 219 (705)
Q Consensus 146 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 219 (705)
+.+.++.....+++.+....+++.+..++-..... ....-..+..+++..|.+.|..+.++.++..=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456666777777777777777777777666654 2222334456788888888888888887766554 77788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHcc
Q 005265 220 WNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASL 265 (705)
Q Consensus 220 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 265 (705)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777777777877777776554
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.06 E-value=0.019 Score=49.38 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=91.1
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CC
Q 005265 520 KEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM---PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS--NS 594 (705)
Q Consensus 520 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~ 594 (705)
++..+.|+...-..|..++.+.|+..||...|++. ...-|......+..+....++...|...++++.+.+|. .+
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 44456788888889999999999999999999987 34568888999999999999999999999999998775 45
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 595 GPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
.....++..|...|++++|+..|+...+.-
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 567889999999999999999999988654
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.06 E-value=0.0017 Score=47.56 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 005265 527 LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHR-NIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 527 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 591 (705)
+...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|.+.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777788888888888888888876 4455 4567788888888888 79999999999999887
No 200
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.02 E-value=0.014 Score=49.52 Aligned_cols=28 Identities=11% Similarity=-0.037 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
.+-.+..++...|+.+.|++.|+.++..
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3333333444444444444444444433
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.96 E-value=0.029 Score=45.96 Aligned_cols=108 Identities=13% Similarity=0.064 Sum_probs=62.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhCCCCcch--hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHH
Q 005265 355 ALIAGYTQNGENEEALGLFRLLKRESVCPTH--YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSL 432 (705)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (705)
.+..++-..|+.++|+.+|++....|..... ..+..+-+++...|++++|..+++........ .+.+..+...+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~----~~~~~~l~~f~ 81 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD----DELNAALRVFL 81 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHH
Confidence 3556777888888899888888887765542 34555566677777777777777777654220 01122222223
Q ss_pred HHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHH
Q 005265 433 IDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVG 466 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 466 (705)
.-++...|+.++|.+.+-...-++...|..-|..
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ 115 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALAETLPRYRRAIRF 115 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666554433333333333333
No 202
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.96 E-value=0.0015 Score=49.33 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 561 VIWGSLLAACKVHRNIMLGEYVAKKLLEI----EPS---NSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666777777888888888888877754 222 234577888888889999999888887653
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.96 E-value=0.11 Score=53.64 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=58.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcC
Q 005265 254 TLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKAS 333 (705)
Q Consensus 254 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 333 (705)
+...+..-+.+...+..|.++|..+-.. ..++++....+++++|..+-+..++--...|.....-++...
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 3333333444555666666666654332 356677777777777777766666544444444444455555
Q ss_pred CHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhC
Q 005265 334 SVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRE 379 (705)
Q Consensus 334 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 379 (705)
++++|.+ +|.+.|+..+|..+++++...
T Consensus 819 rFeEAqk------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQK------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHH------------------HHHHhcchHHHHHHHHHhhhh
Confidence 5555544 445677788888888877654
No 204
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.94 E-value=0.016 Score=45.63 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=67.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCC-CcchhhHHHHHHHHhhcc--------cHHHHHHHHHHHHHhCCCCCCCCC
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKRESV-CPTHYTFGNLLNACANLA--------DLQLGRQAHTHVVKHGLRFLSGEE 423 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 423 (705)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..++ +
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~l------K 101 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKL------K 101 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhcc------C
Confidence 34567777788999999999999999999 999999999999987653 34567788899999998 8
Q ss_pred CcHhHHHHHHHHHHh
Q 005265 424 SDIFVGNSLIDMYMK 438 (705)
Q Consensus 424 ~~~~~~~~li~~~~~ 438 (705)
|+..+|+.++..+.+
T Consensus 102 P~~etYnivl~~Llk 116 (120)
T PF08579_consen 102 PNDETYNIVLGSLLK 116 (120)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999999887765
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.94 E-value=0.0059 Score=54.36 Aligned_cols=89 Identities=11% Similarity=0.149 Sum_probs=66.6
Q ss_pred CCCcccHHHHHHHHHh-----CCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCC----------------CcHHHH
Q 005265 113 ERDQCSWNSMVSGFAQ-----HDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSV----------------DFKMGT 171 (705)
Q Consensus 113 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 171 (705)
.+|..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.||+.+-+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455566666666653 4677777788888999999999999999998875432 234578
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhhcCCC
Q 005265 172 QVHALLSKSRYSSDVYMGSALIDMYGKCGR 201 (705)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 201 (705)
+++++|...|+-||..++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888876654
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.76 Score=48.84 Aligned_cols=337 Identities=12% Similarity=0.004 Sum_probs=155.1
Q ss_pred HHHcCCCCchhhHH-----HHHHHHHccCChhhHHHHHhccCCCC---hhhHHHHHHHHHhcCC---hhHHHHHHhcCCC
Q 005265 45 IIKSQFASEIFIQN-----RLIDVYAKCGCLYGARKVFDKMSNKN---VFTWNSIITGLLKWGF---IDDASRLFASMPE 113 (705)
Q Consensus 45 ~~~~~~~~~~~~~~-----~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~ 113 (705)
+...|++.+-.-|. .+++-+...+.+..|.++-..+..|. ..+|.....-+.+..+ -+-+..+-+++..
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 33445555444443 34666666777777777777666554 3445555555554422 2223333333433
Q ss_pred --CCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCC----CChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChh
Q 005265 114 --RDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFA----LSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVY 187 (705)
Q Consensus 114 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 187 (705)
....+|..+.+..-..|+++-|..+++.=...+.+ .+..-+...+.-+...|+.+....++-.+...- +..
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s 579 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRS 579 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHH
Confidence 34556777777777777777777776543332211 133345566666777777777666665554431 111
Q ss_pred hHHHHHHHhhcCCChHHHHHHHhccCC-CCcchHHHHHHHHHhcCChhHHHHHHH--H----HHHCCCCCCHhHHHHHHH
Q 005265 188 MGSALIDMYGKCGRVSCARRVFDGMRE-RNIVSWNSLITCYEQNGPASDALEVFV--R----MMASGIEPDEVTLASVVS 260 (705)
Q Consensus 188 ~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~----m~~~g~~p~~~t~~~ll~ 260 (705)
.+...+ .+...|..++.+..+ .|..+ +-..| ..++-..++..|. . -...|..|+.. ....
T Consensus 580 ~l~~~l------~~~p~a~~lY~~~~r~~~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~ 646 (829)
T KOG2280|consen 580 SLFMTL------RNQPLALSLYRQFMRHQDRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALK---TAAN 646 (829)
T ss_pred HHHHHH------HhchhhhHHHHHHHHhhchhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHH
Confidence 111111 111222222222111 11000 00000 0000000000000 0 00011122211 1122
Q ss_pred HHHccCChH----------HHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHH
Q 005265 261 ACASLAAFK----------EGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYA 330 (705)
Q Consensus 261 ~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 330 (705)
++++..... .-..+.+.+...-+......+.+--+.-+...|+...|.++-.+..-||-..|-.-+.+++
T Consensus 647 ~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 647 AFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALA 726 (829)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 222221111 0111111111111112222233334444556677777777777777676666666667777
Q ss_pred hcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHH
Q 005265 331 KASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAH 408 (705)
Q Consensus 331 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 408 (705)
..+++++-+++-++... +.-|.-+..+|.+.|+.++|.+++.+... +.-...+|.+.|++.+|.+.-
T Consensus 727 ~~~kweeLekfAkskks--PIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSKKS--PIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhhHHHHHHHHhccCC--CCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence 77777666655554433 56666677777777777777776654321 113445666666666655543
No 207
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.88 E-value=0.0019 Score=42.10 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 561 VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
.+|..+...+...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788889999999999999999999999999988877764
No 208
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.87 E-value=0.19 Score=47.55 Aligned_cols=175 Identities=13% Similarity=0.092 Sum_probs=106.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVER---DWVS---WNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH--VTMIG 497 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ 497 (705)
....-.....+...|++++|.+.|+.+... +... .-.++.+|.+.+++++|...+++.++ ..|+. ..+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHH
Confidence 333334455566778888888888887642 1222 23456677788888888888888887 44543 23333
Q ss_pred HHHHHhc--c---------------Cc---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 005265 498 VLCACSH--A---------------GL---VEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQ 557 (705)
Q Consensus 498 ll~~~~~--~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 557 (705)
.+.+.+. . .+ ...|...|+.+++.+ |+ +.-..+|...+..+.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~-- 171 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLK-- 171 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHH--
Confidence 4433331 1 01 123444444444332 22 233344444333331
Q ss_pred CCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc---hHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 558 PDAVIWG--SLLAACKVHRNIMLGEYVAKKLLEIEPSNSG---PYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 558 p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
+...-. .+..-|.+.|.+..|..-++.+++.-|+.+. +...++..|.+.|..++|..+...+.
T Consensus 172 -~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 172 -DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 111111 3344588899999999999999998777554 46688899999999999999877654
No 209
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.82 E-value=0.042 Score=53.39 Aligned_cols=126 Identities=14% Similarity=0.094 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHH-HhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNA-CANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGN 430 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (705)
+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.- +.+...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-------~~~~~~~~ 74 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-------PSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-------TT-HHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-------CCCHHHHH
Confidence 35555555555555566666666555332 1122222222222 222344555666665555542 34555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVER------DWVSWNAMIVGCAQNGYGTEALGLFKKMLL 485 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (705)
..++.+.+.|+.+.|..+|++.... -...|...+.-=.+.|+.+.+.++.+++.+
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666655432 223555555555556666666666665555
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.80 E-value=0.015 Score=51.86 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=69.6
Q ss_pred HHHHcc--CCCChhHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc--------------
Q 005265 447 RIFETM--VERDWVSWNAMIVGCAQ-----NGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHA-------------- 505 (705)
Q Consensus 447 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------------- 505 (705)
..|+.. ..++..+|..++..|.+ +|..+=....++.|.+-|+.-|..+|+.||+.+-+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 445554 35677788888887775 467777788888999999999999999999887652
Q ss_pred --CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 005265 506 --GLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGC 543 (705)
Q Consensus 506 --g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 543 (705)
.+-+-|++++++| +.+|+.||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 2235667777777 445777777777777777766553
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.77 E-value=0.02 Score=54.49 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=60.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHH
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP----DAVIWGSLLA 568 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~ 568 (705)
|...+......|++++|...|+.+.+.+.-.+- ...+-.+..+|...|++++|...|+.+ ...| ....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334456666666666666554311110 234555666666777777777766665 1122 2344555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 569 ACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 569 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
.+...|+.+.|.+.|+++++..|++..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 677889999999999999998887753
No 212
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.77 E-value=0.61 Score=45.52 Aligned_cols=239 Identities=18% Similarity=0.141 Sum_probs=135.0
Q ss_pred cCChHHHHHHHhhCCCCCcc---cHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHHcCChHHHHHHHH
Q 005265 301 CGKLNEARCVFDRMPIRNVV---SETSMVSGYAKASSVKSARLMFTKMLE---RNVVSWNALIAGYTQNGENEEALGLFR 374 (705)
Q Consensus 301 ~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 374 (705)
.|+++.|.+-|+.|...... -...|.-.-.+.|..+.|...-+..-. .-...+...+...|..|+|+.|+++++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 46666666666666532111 111222223355666666666665533 234567888999999999999999998
Q ss_pred HhhhCC-CCcchhh--HHHHHHHHh---hcccHHHHHHHHHHHHHhCCCCCCCCCCcHh-HHHHHHHHHHhcCCHHHHHH
Q 005265 375 LLKRES-VCPTHYT--FGNLLNACA---NLADLQLGRQAHTHVVKHGLRFLSGEESDIF-VGNSLIDMYMKCGSVEDGCR 447 (705)
Q Consensus 375 ~m~~~g-~~p~~~t--~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~ 447 (705)
.-+... +.++..- -..|+.+-. -..+...|+..-.+..+.. |+.. .--.-..++.+.|++.++-.
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~--------pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLA--------PDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--------CccchHHHHHHHHHHhccchhhhhh
Confidence 766543 3444321 222222211 1224555555555555543 2322 22233466778888888888
Q ss_pred HHHccCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 005265 448 IFETMVE--RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLC-GEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHG 523 (705)
Q Consensus 448 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 523 (705)
+++.+-+ |.+..+.. -.+.+.| +.++.-+++.... .++||. .....+..+....|++..|..--+... .
T Consensus 285 ilE~aWK~ePHP~ia~l--Y~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r 357 (531)
T COG3898 285 ILETAWKAEPHPDIALL--YVRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---R 357 (531)
T ss_pred HHHHHHhcCCChHHHHH--HHHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---h
Confidence 8887753 44443332 2233344 3444444443321 266665 456666677777777777776655443 3
Q ss_pred CCCChhHHHHHHHHHHhc-CChHHHHHHHHhC
Q 005265 524 LAPLKDHYTCMVDLLGRA-GCLDEAKTLIEAM 554 (705)
Q Consensus 524 ~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 554 (705)
..|....|..|.+.-... |+-.++...+-+.
T Consensus 358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 467777777777765443 7777777776665
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.75 E-value=0.0054 Score=45.54 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=49.5
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 005265 536 DLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPY 597 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 597 (705)
.+|.+.+++++|.+.++.+ ...| +...|......+...|++++|.+.++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5678888888888888887 4455 455677777778899999999999999999999876543
No 214
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.74 E-value=0.73 Score=46.02 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHccCC---CChhHHHHHHH----HHHH---cCChHHHHHHHHHHHHCCCCCChhh----HHHHHHH--Hh
Q 005265 440 GSVEDGCRIFETMVE---RDWVSWNAMIV----GCAQ---NGYGTEALGLFKKMLLCGEKPDHVT----MIGVLCA--CS 503 (705)
Q Consensus 440 g~~~~A~~~~~~~~~---~~~~~~~~li~----~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~--~~ 503 (705)
+.-++|+++++.+.+ .|...-|.... .|.+ .....+-+.+-+-+.+.|+.|-.+. -+.+.+| +.
T Consensus 394 ~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred CccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 336777777776652 34443333221 2221 2234444555555666788775432 3333333 45
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005265 504 HAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGS 565 (705)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 565 (705)
..|++.++.-+-..+. .+.|++.+|..+.-++....++++|...+...| |+..++++
T Consensus 474 sqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred hcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 6899999987776664 478999999999999999999999999999985 46665554
No 215
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=96.73 E-value=0.0014 Score=53.27 Aligned_cols=46 Identities=39% Similarity=0.820 Sum_probs=39.3
Q ss_pred ceeEEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHHcCcccCCC-cccccccccc
Q 005265 630 GCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPNAS-DDEAYEEQNG 687 (705)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~-~~~~~~~~~~ 687 (705)
|++|+++ |.|.++|..||+. ++..++...||.|++. ++++++++++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~ 48 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEK 48 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhh
Confidence 6889887 8999999999988 4667888899999999 8888887665
No 216
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.70 E-value=1 Score=47.32 Aligned_cols=199 Identities=10% Similarity=0.050 Sum_probs=101.5
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHhccCC-CCcchHHHH----------HHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 005265 183 SSDVYMGSALIDMYGKCGRVSCARRVFDGMRE-RNIVSWNSL----------ITCYEQNGPASDALEVFVRMMASGIEPD 251 (705)
Q Consensus 183 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l----------i~~~~~~g~~~~A~~~~~~m~~~g~~p~ 251 (705)
.|.+..|..|.....+.-.++.|...|-+... +.+..-.-| ...-+--|.+++|.++|-+|-...+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 46666777776666666666666666655543 222111101 0111224677777777766654321
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHH
Q 005265 252 EVTLASVVSACASLAAFKEGLQIHARLMRCEKLRND----LVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVS 327 (705)
Q Consensus 252 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 327 (705)
.+....+.|++-...++++ .|+-..| ...++.+.+.+.....+++|.+.|..-.. -...+.
T Consensus 766 ------Aielr~klgDwfrV~qL~r----~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~e 830 (1189)
T KOG2041|consen 766 ------AIELRKKLGDWFRVYQLIR----NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIE 830 (1189)
T ss_pred ------hHHHHHhhhhHHHHHHHHH----ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHH
Confidence 2333445555555444432 2212222 23556666666666666666665543221 012333
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHH
Q 005265 328 GYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQA 407 (705)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 407 (705)
.|.+...+++-+.+-..+++ +....-.+..++.+.|.-++|.+.|-+-- .| ...+..|...+++.+|.++
T Consensus 831 cly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443 34445567777777888777777664321 12 1234566666666666555
Q ss_pred HH
Q 005265 408 HT 409 (705)
Q Consensus 408 ~~ 409 (705)
-+
T Consensus 901 aq 902 (1189)
T KOG2041|consen 901 AQ 902 (1189)
T ss_pred HH
Confidence 43
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.62 E-value=0.022 Score=55.34 Aligned_cols=128 Identities=14% Similarity=0.063 Sum_probs=87.6
Q ss_pred hHHHHHHHHhhcccHHHHHHHHHHHH----HhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC-------CC
Q 005265 387 TFGNLLNACANLADLQLGRQAHTHVV----KHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV-------ER 455 (705)
Q Consensus 387 t~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~ 455 (705)
.|..+-+.|.-.|+++.|...++.-. +.|-+ ......+..+.+++.-.|+++.|.+.|+... .+
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr-----AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r 271 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR-----AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR 271 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH-----HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch
Confidence 45555566666788998888876543 22321 2344677788899999999999998887642 22
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCChhhHHHHHHHHhccCcHHHHHHHHHHhH
Q 005265 456 --DWVSWNAMIVGCAQNGYGTEALGLFKKMLL----CG-EKPDHVTMIGVLCACSHAGLVEEGRKYFSSMS 519 (705)
Q Consensus 456 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (705)
...+.-+|.+.|.-..+++.|+.++.+-+. .+ ..-....+.++..++...|..++|+.+.+.-.
T Consensus 272 ~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 272 TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 233556678888888889999988876443 11 11233578888888888898888887765443
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.11 Score=47.47 Aligned_cols=194 Identities=12% Similarity=0.028 Sum_probs=103.3
Q ss_pred CchhhHHHHHHHHHccCChhhHHHHHhccC---CCCh---------------------------------hhHHHHHHHH
Q 005265 52 SEIFIQNRLIDVYAKCGCLYGARKVFDKMS---NKNV---------------------------------FTWNSIITGL 95 (705)
Q Consensus 52 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~---------------------------------~~~~~li~~~ 95 (705)
.....|+.-+.++.+....++|..-++.+- .||. .-|++|++.+
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 334566777888889888888876655442 2211 1133444433
Q ss_pred HhcCChhHHHHHHhcCCCC--Cc--------ccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCC
Q 005265 96 LKWGFIDDASRLFASMPER--DQ--------CSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSV 165 (705)
Q Consensus 96 ~~~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 165 (705)
.-..-+++-+..|+.-..| .+ ..-+.+++.+.-.|.+.-.++++.+..+...+.++.....+.+.-.+.|
T Consensus 147 ~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G 226 (366)
T KOG2796|consen 147 KLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG 226 (366)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc
Confidence 3333333333333332221 11 1234455555556666666666666666655556666666666666667
Q ss_pred CcHHHHHHHHHHHHcCCCCChhhHHHH-----HHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHH
Q 005265 166 DFKMGTQVHALLSKSRYSSDVYMGSAL-----IDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDAL 237 (705)
Q Consensus 166 ~~~~a~~~~~~~~~~g~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 237 (705)
|.+.|...++...+..-..+....+.+ ...|.-..++..|.+.|++++. .|+..-|.-.-+..-.|+..+|+
T Consensus 227 D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 227 DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence 777777766655543322233222222 2334445566666666666654 23334444333444456666666
Q ss_pred HHHHHHHH
Q 005265 238 EVFVRMMA 245 (705)
Q Consensus 238 ~~~~~m~~ 245 (705)
+.++.|++
T Consensus 307 K~~e~~~~ 314 (366)
T KOG2796|consen 307 KQLEAMVQ 314 (366)
T ss_pred HHHHHHhc
Confidence 66666665
No 219
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.45 E-value=0.76 Score=43.51 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=31.2
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCcchh-h---HHHHHHHHhhcccHHHHHHHHHHHHHhC
Q 005265 356 LIAGYTQNGENEEALGLFRLLKRESVCPTHY-T---FGNLLNACANLADLQLGRQAHTHVVKHG 415 (705)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t---~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 415 (705)
....+...|++++|+..|+.+...- |+.. . .-.+..++.+.++++.|...++..++..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4444556677777777777666532 2221 1 1233344555666666666666665554
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.41 E-value=0.26 Score=45.27 Aligned_cols=165 Identities=12% Similarity=0.094 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCC--C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHH
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVE--R----DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV--TMIGVLC 500 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~ 500 (705)
.-.....+...|++++|.+.|+.+.. | -..+.-.++.++.+.|+++.|...+++.++. -|+.. .+...+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHH
Confidence 33445566778889999999888863 2 2335566778888889999999999988873 44432 2232232
Q ss_pred HHhcc-------------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH--H
Q 005265 501 ACSHA-------------GLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWG--S 565 (705)
Q Consensus 501 ~~~~~-------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~--~ 565 (705)
+.+.. +...+|...|+.+ +.-|=.+....+|...+..+. +...-. .
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l----------------i~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ 146 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEEL----------------IKRYPNSEYAEEAKKRLAELR---NRLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHH----------------HHH-TTSTTHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHH----------------HHHCcCchHHHHHHHHHHHHH---HHHHHHHHH
Confidence 22211 1122333444433 334444444555555444432 111111 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHHhcCChhHHH
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGP---YVLLSNMYAELGRWGEVV 614 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~ 614 (705)
+...|.+.|.+..|..-++.+++..|+.... ...++..|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3455889999999999999999999986643 567888899999888444
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.41 E-value=0.42 Score=43.94 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH----VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVD 536 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 536 (705)
-.....+...|++.+|.+.|+++... -|+. .....++.++.+.|+++.|...++...+.+.-.|.. .+...+.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~ 85 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYML 85 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHH
Confidence 33455566777788888888777764 2322 245556667777777777777777777665444432 1111111
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch-----------------HHH
Q 005265 537 LLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP-----------------YVL 599 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~~~ 599 (705)
+.+......... ......+....|...|+.+++..|++... -..
T Consensus 86 g~~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 86 GLSYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100000 01122334556777777777777776543 235
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 005265 600 LSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
++..|.+.|++..|..-++.+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 78889999999999999999874
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.35 E-value=0.0048 Score=46.56 Aligned_cols=61 Identities=21% Similarity=0.164 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 529 DHYTCMVDLLGRAGCLDEAKTLIEAM-------P-MQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
.+++.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44556666666666666666666554 1 1122 446677777788888888888888887764
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.36 Score=44.35 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCC--Chh--------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVER--DWV--------SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGV 498 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 498 (705)
+++|...+.-..-+++-+..++.-..+ .+. .-+.++..+.-.|.+.-.+.++++.++..-+-+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455555555544455555555433221 222 2344555566667777778888888875444455566667
Q ss_pred HHHHhccCcHHHHHHHHHHhHHh
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKE 521 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~ 521 (705)
.+.-.+.|+.+.|..+|++..+.
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~ 241 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKV 241 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 77777788888888888876544
No 224
>PRK11906 transcriptional regulator; Provisional
Probab=96.26 E-value=0.077 Score=53.44 Aligned_cols=62 Identities=6% Similarity=-0.090 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
|+.....+..+....++++.|...|+++..++|+.+..|...++.+.-.|+.++|.+.+++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444444555555555555555555555555555555555555555555553
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.056 Score=52.98 Aligned_cols=138 Identities=13% Similarity=-0.036 Sum_probs=102.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGC 543 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 543 (705)
.+.|.+.|++..|...|++.+.. -+. ...-+.++...... .-..++..|.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~-----------~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEY-----------RRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhc-----------cccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 46677888888888888887662 111 11111122222211 123456778889999999
Q ss_pred hHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHH-HHHHHHH
Q 005265 544 LDEAKTLIEAM-PMQ-PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEV-VRVRKLM 620 (705)
Q Consensus 544 ~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 620 (705)
+.+|++..+.. ..+ +|...+..=..+|...|+++.|+..|+++++++|+|-.+-..|+.+-.+...+.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988876 444 56778888888899999999999999999999999988888888888887776654 8899999
Q ss_pred HhC
Q 005265 621 RKR 623 (705)
Q Consensus 621 ~~~ 623 (705)
..+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 764
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=2.3 Score=45.41 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcH
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLV 508 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 508 (705)
.+--+.-+...|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+. .+.-|.....+|.+.|+.
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccH
Confidence 34445556677888889988888888888888888888888888887666654432 255677788889999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 005265 509 EEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEA 553 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (705)
++|.+++-... |. .-.+.+|.+.|++.+|.++--+
T Consensus 761 ~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 761 DEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHHHHHH
Confidence 99988887442 11 1457788888888888776443
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.14 E-value=0.028 Score=48.60 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+...++..+...|++++|...+++++..+|-+...|..++.+|...|+..+|.++|+++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556677788999999999999999999999999999999999999999999999998864
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.13 E-value=0.16 Score=42.49 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=60.2
Q ss_pred HHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHHh
Q 005265 535 VDLLGRAGCLDEAKTLIEAM----PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP---YVLLSNMYAE 606 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~ 606 (705)
.....+.|++++|.+.|+.+ +..| ....-..|+.++.+.+++++|...+++.++++|.++.+ +...+-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 44455678888888888877 2222 34456678888999999999999999999998887653 4444444555
Q ss_pred cCC---------------hhHHHHHHHHHHh
Q 005265 607 LGR---------------WGEVVRVRKLMRK 622 (705)
Q Consensus 607 ~g~---------------~~~A~~~~~~~~~ 622 (705)
+.. ..+|..-|+.+.+
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 444 5556666665554
No 229
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.05 E-value=0.078 Score=42.78 Aligned_cols=90 Identities=19% Similarity=0.116 Sum_probs=72.9
Q ss_pred HHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCC---chHHHHHHHHHhcCC
Q 005265 536 DLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIE-PSNS---GPYVLLSNMYAELGR 609 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~ 609 (705)
-++...|+++.|++.|.+. .+- .+...||.-..+++-+|+.++|..-+++++++. |..- ..|..-+.+|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788999999988876 333 367789999999999999999999999999984 4322 247788889999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 005265 610 WGEVVRVRKLMRKRGV 625 (705)
Q Consensus 610 ~~~A~~~~~~~~~~~~ 625 (705)
.+.|+.-|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998877663
No 230
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.01 E-value=0.64 Score=37.88 Aligned_cols=141 Identities=15% Similarity=0.092 Sum_probs=85.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDE 546 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 546 (705)
+.-.|..++..++..+.... .+..-++-++.-....-+-+-..+.++.+-+-+. ...+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFD--------------is~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFD--------------ISKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS---------------GGG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcC--------------chhhcchHH
Confidence 34467777888888777663 2333455555444444445555566665533222 234556666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005265 547 AKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVV 626 (705)
Q Consensus 547 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 626 (705)
....+-.++ .+.......++....+|+-+.-.+++..+.+.+..++.....++.+|.+.|+..++-+++++.-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555555553 233445566778889999999999999998766667788999999999999999999999999998873
No 231
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.93 E-value=2.1 Score=42.83 Aligned_cols=135 Identities=12% Similarity=0.036 Sum_probs=104.3
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH-HH
Q 005265 455 RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCG-EKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDH-YT 532 (705)
Q Consensus 455 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~ 532 (705)
+-...|...++.-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|-.+|+.-.+.+ ||... -+
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ 470 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKE 470 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHH
Confidence 445678888888888888999999999999988 5677778888887655 578888999998766543 45333 34
Q ss_pred HHHHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 005265 533 CMVDLLGRAGCLDEAKTLIEAM--PMQPD--AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 593 (705)
-.+.-+.+.++-+.|..+|+.. .+..+ ...|..++..-..-|+...+..+-+++.+..|..
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 4566678889999999999965 23333 5578888888888999999999888888888865
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=95.88 E-value=0.69 Score=46.89 Aligned_cols=159 Identities=11% Similarity=0.066 Sum_probs=106.9
Q ss_pred hHH--HHHHHHHHHc-----CChHHHHHHHHHHHH-CCCCCChh-hHHHHHHHHhc---------cCcHHHHHHHHHHhH
Q 005265 458 VSW--NAMIVGCAQN-----GYGTEALGLFKKMLL-CGEKPDHV-TMIGVLCACSH---------AGLVEEGRKYFSSMS 519 (705)
Q Consensus 458 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-~~~~ll~~~~~---------~g~~~~a~~~~~~~~ 519 (705)
..| ..++.+.... ...+.|+.+|.+... ..+.|+.. .|..+..++.. .....+|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 5566655442 234578888998882 23667653 44443333221 234455666666554
Q ss_pred HhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 005265 520 KEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 520 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 596 (705)
.+.|+ ......+..++.-.|+++.|..+|++. .+.|| ..+|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 44554 777778888888889999999999998 56776 4466666666888999999999999999999987765
Q ss_pred HHHHHHH-HHhcCChhHHHHHHHH
Q 005265 597 YVLLSNM-YAELGRWGEVVRVRKL 619 (705)
Q Consensus 597 ~~~l~~~-~~~~g~~~~A~~~~~~ 619 (705)
-..-.++ ..-....++|.+++-+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCCchhhhHHHHhh
Confidence 5444444 3334557788887754
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.17 Score=48.01 Aligned_cols=16 Identities=38% Similarity=0.254 Sum_probs=12.1
Q ss_pred ccccchhhhHHHhhhh
Q 005265 689 NSTSDCQIDFQVETAI 704 (705)
Q Consensus 689 ~~~~~~~~~~~~~~~~ 704 (705)
-=.++.|+|.-|+|-|
T Consensus 395 iggs~~q~dlf~q~~~ 410 (491)
T KOG2610|consen 395 IGGSGLQRDLFVQTLI 410 (491)
T ss_pred hcCcchhHHHHHHHHH
Confidence 3456789999998865
No 234
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.36 Score=45.71 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=69.4
Q ss_pred ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCCCHH-HHHH
Q 005265 491 DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAG---CLDEAKTLIEAM-PMQPDAV-IWGS 565 (705)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~~~-~~~~ 565 (705)
|...|..|..+|...|+.+.|...|....+-.| +++..+..+..++..+. ...++..+|+++ ..+|+.. +..-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 345777777778888888888777776654322 23555666665544332 345677788877 4566444 4455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
|...+...|++.+|...++.+++..|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 555588999999999999999998777644
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.64 E-value=1.9 Score=40.31 Aligned_cols=194 Identities=22% Similarity=0.185 Sum_probs=124.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMV-----ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLC 500 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 500 (705)
...+......+...+.+..+...+.... ......+......+...+++..+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4555666666677777777776666543 22444555666666667777777777777776332221 12222222
Q ss_pred -HHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 005265 501 -ACSHAGLVEEGRKYFSSMSKEHGLAP----LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD--AVIWGSLLAACKV 572 (705)
Q Consensus 501 -~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~ 572 (705)
.+...|+++.|...+..... ..| ....+......+...++.++|...+... ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 57777888888888877633 222 2334444444566777888888877776 33333 5666777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 573 HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 573 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
.++++.|...+.......|.....+..++..+...|.++++...+.+....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888775555667777777667788888877777643
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.62 E-value=0.094 Score=48.84 Aligned_cols=91 Identities=22% Similarity=0.342 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHH
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM----P---MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS---GPYVL 599 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~----~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~ 599 (705)
.|+.-++ +.+.|++.+|...|... + ..||..-| |..++...|+++.|..+|..+.+-.|+++ ..+.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3444443 33456677777766665 1 22344433 77778888888888888888888755543 45777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 005265 600 LSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
|+.+..+.|+.++|..+++++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888888888888888888888754
No 237
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.62 E-value=0.16 Score=42.14 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=30.1
Q ss_pred CCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 005265 488 EKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVD 536 (705)
Q Consensus 488 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 536 (705)
..|+..+..+++.+++..|++..|.++.+...+.++++.+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4556666666666666666666666666666666665555555555554
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.60 E-value=0.073 Score=53.51 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDA----VIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|.++..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667777777788888888888887775 566653 35777777788888888888888888776
No 239
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.46 E-value=4.8 Score=45.60 Aligned_cols=65 Identities=20% Similarity=0.317 Sum_probs=34.2
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCC-Ceeh--HHHHHHHHHHcCChHHHHH
Q 005265 295 VDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLER-NVVS--WNALIAGYTQNGENEEALG 371 (705)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~--~~~li~~~~~~g~~~~A~~ 371 (705)
.-+|.++|+.++|. .+|..+|++.+|..+..++..+ +... -..|+.-+...+++-+|-+
T Consensus 959 al~Ye~~GklekAl------------------~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~ 1020 (1265)
T KOG1920|consen 959 ALMYERCGKLEKAL------------------KAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAK 1020 (1265)
T ss_pred HHHHHHhccHHHHH------------------HHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHH
Confidence 34566666666666 3344556666666666555333 2111 1345555555666655555
Q ss_pred HHHHhh
Q 005265 372 LFRLLK 377 (705)
Q Consensus 372 ~~~~m~ 377 (705)
+..+..
T Consensus 1021 il~e~~ 1026 (1265)
T KOG1920|consen 1021 ILLEYL 1026 (1265)
T ss_pred HHHHHh
Confidence 554443
No 240
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=2.4 Score=45.92 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKML 484 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 484 (705)
-++..+.+..+++.+..+.+...+.++..|-.++..+++.+..+.-.+...+.+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 355666777777777777777777788888888888888776655555444443
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=2.2 Score=39.04 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhh
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLK 377 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~ 377 (705)
.|.....+|....++++|...+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34445555556666666655554443
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.28 E-value=1.7 Score=44.32 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhCCCCCc
Q 005265 578 LGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~~~~ 595 (705)
.|.+...++++.+|.-+.
T Consensus 364 ~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHHHHHHhCCCCch
Confidence 366788888888876554
No 243
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.23 E-value=0.23 Score=41.14 Aligned_cols=54 Identities=11% Similarity=0.025 Sum_probs=40.4
Q ss_pred CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHh
Q 005265 247 GIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAK 300 (705)
Q Consensus 247 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 300 (705)
...|+..+..+++.+++..+++..|.++.+...+..+++.+..+|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 356778888888888888888888888888888776677777777777764433
No 244
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.08 E-value=0.39 Score=46.25 Aligned_cols=195 Identities=7% Similarity=0.003 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHc----cC---CC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCh---h
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFET----MV---ER--DWVSWNAMIVGCAQNGYGTEALGLFKKMLLC-GEKPDH---V 493 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~----~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~ 493 (705)
.++..+.++.+..|.+++++..--. .. +. -..+|..+..++.+..++.+++.+-+.-... |..|.. .
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 3455566667777776665543211 11 11 1235556666666666666666665544332 333321 2
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCH--
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP----LKDHYTCMVDLLGRAGCLDEAKTLIEAM-------PMQPDA-- 560 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-- 560 (705)
...++..+....+.++++++.|+...+-..-.. ...++..|...|.+..++++|.-+..+. ++..-.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 334455666777788888888887654321111 2457888888899988888876665443 222111
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh--C----CCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 561 ---VIWGSLLAACKVHRNIMLGEYVAKKLLEI--E----PSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 561 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
.+...+.-+++..|....|.+..+++.++ . |-.......++++|-..|+.+.|..-++...
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 23334455578889888888888888776 2 2223345678899999998888877776543
No 245
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.06 E-value=0.053 Score=32.80 Aligned_cols=32 Identities=16% Similarity=0.048 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 561 VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45777777788888888888888888888876
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=2.9 Score=39.64 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=26.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 466 GCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 466 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
.....|++.+|..+|+..... .|. ......+..++...|+.+.|..++..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 344555566666666555552 222 233444455555555555555555544
No 247
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.95 E-value=0.082 Score=31.87 Aligned_cols=32 Identities=28% Similarity=0.220 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 593 (705)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666677777777888888888877777764
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.91 E-value=1.3 Score=44.20 Aligned_cols=170 Identities=12% Similarity=0.123 Sum_probs=93.0
Q ss_pred HHHHHhhcCCChHHHHHHHhccCCC-Cc------chHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 005265 191 ALIDMYGKCGRVSCARRVFDGMRER-NI------VSWNSLITCYEQ---NGPASDALEVFVRMMASGIEPDEVTLASVVS 260 (705)
Q Consensus 191 ~li~~~~~~g~~~~A~~~~~~~~~~-~~------~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 260 (705)
.++-.|-...+++...++++.+... +. ..--...-++.+ .|+.++|++++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577778888888888887753 11 111233344555 7888889988888766666777777777666
Q ss_pred HHHc---------cCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHh
Q 005265 261 ACAS---------LAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAK 331 (705)
Q Consensus 261 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 331 (705)
.|-. ...++.|...|.+..+ +.|+....-.++..+...|.......-++++. +.++ ..+.+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~----~~l~---~llg~ 295 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIG----VKLS---SLLGR 295 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHH----HHHH---HHHHh
Confidence 5531 1235666666666555 33444443334444444443222211111100 0000 01111
Q ss_pred cCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhC
Q 005265 332 ASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRE 379 (705)
Q Consensus 332 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 379 (705)
.|..+ ...+-..+.+++.+..-.|++++|...+++|.+.
T Consensus 296 kg~~~---------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 296 KGSLE---------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hcccc---------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 11110 0122233456778888888999999998888875
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.70 E-value=1.5 Score=46.16 Aligned_cols=115 Identities=19% Similarity=0.107 Sum_probs=75.2
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHH-HHHHHhcCChHHHHHHHHhCC-C-----CCCHHHHHHHHHHHHhcCCHH
Q 005265 505 AGLVEEGRKYFSSMSKEHGLAPLKDHYTCM-VDLLGRAGCLDEAKTLIEAMP-M-----QPDAVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~-~-----~p~~~~~~~l~~~~~~~g~~~ 577 (705)
....+.|.++++.+.+. -|+...|... ...+...|++++|++.|+++- . +-....+.-+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 44566777777777654 3554444332 345666777888888777652 1 112345555666677788888
Q ss_pred HHHHHHHHHHhhCCCCCchH-HHHHHHHHhcCCh-------hHHHHHHHHHHh
Q 005265 578 LGEYVAKKLLEIEPSNSGPY-VLLSNMYAELGRW-------GEVVRVRKLMRK 622 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~-------~~A~~~~~~~~~ 622 (705)
+|...+.++.+.+.-....| ...+.++...|+. ++|.++++++..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 89888888888766544444 3455556777888 888888887764
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.70 E-value=0.98 Score=37.92 Aligned_cols=114 Identities=12% Similarity=-0.001 Sum_probs=56.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 005265 465 VGCAQNGYGTEALGLFKKMLLCGEKP---DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRA 541 (705)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 541 (705)
....+.|++++|.+.|+.+... .+. ....-..++.++.+.+++++|...+++.++-+.-.|+ ..|.....+++.-
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 3344556666666666666553 111 1124445555666666666666666666554333333 2233333333322
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 542 GCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 542 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
...+..+.-+- ..+ +..+....|...|+++++..|++..
T Consensus 96 ~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCChh
Confidence 22111111110 111 1122356888899999999998753
No 251
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.67 E-value=0.31 Score=45.21 Aligned_cols=98 Identities=21% Similarity=0.171 Sum_probs=77.6
Q ss_pred HHHHHccC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC------------
Q 005265 446 CRIFETMV--ERDWVSWNAMIVGCAQN-----GYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAG------------ 506 (705)
Q Consensus 446 ~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g------------ 506 (705)
...|..+. ++|..+|.+++..|..+ ++++=....++.|.+-|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45566665 56888888888887654 566777778889999999999999999998776532
Q ss_pred ----cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005265 507 ----LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCL 544 (705)
Q Consensus 507 ----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 544 (705)
.-+-++.++++| +.+|+.||.++-..|++++++.+..
T Consensus 134 HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence 234578889999 5679999999999999999988864
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.66 E-value=1.7 Score=40.42 Aligned_cols=136 Identities=13% Similarity=0.104 Sum_probs=79.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLCGE--KPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRA 541 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 541 (705)
+..-.+.|++++|.+.|+.+..... +-...+...++-++.+.+++++|+...++..+.++-.|+.. |...+.+++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs-- 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS-- 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH--
Confidence 3445567777888888777776421 11223555666667777777777777777776666666532 333333333
Q ss_pred CChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch-----------------HHHHHHH
Q 005265 542 GCLDEAKTLIEAMP-MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP-----------------YVLLSNM 603 (705)
Q Consensus 542 g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~~~ 603 (705)
.|.... ...|. .-...|..-++.+++..|++..+ =..++..
T Consensus 118 --------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 118 --------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred --------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 01111 11234455555555556664432 2367788
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 005265 604 YAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 604 ~~~~g~~~~A~~~~~~~~~~ 623 (705)
|.+.|.|.-|..-++.|.+.
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc
Confidence 99999999999999999864
No 253
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.61 E-value=0.37 Score=41.58 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHhH----HhcCCCCChhH
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSMS----KEHGLAPLKDH 530 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 530 (705)
...++..+...|++++|..+.+++.. ..| |...+..++.++...|+...|.++|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 33445555666666666666666666 334 33466666666666666666666665553 23466666544
No 254
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.61 E-value=1.4 Score=38.36 Aligned_cols=128 Identities=12% Similarity=0.045 Sum_probs=54.3
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCC
Q 005265 5 RSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKN 84 (705)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 84 (705)
+.++.+...+++|+...|..+++.+.+.|.+....+ +++.++-+|.......+-.+ .+....+.++=-.|..+=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHHh
Confidence 344455556666666666666666666665443333 33344333332222211111 112222322222222221
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHH
Q 005265 85 VFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGY 138 (705)
Q Consensus 85 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 138 (705)
...+..++..+...|++-+|+++.+....-+......++.+..+.++...-..+
T Consensus 89 ~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V 142 (167)
T PF07035_consen 89 GTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAV 142 (167)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHH
Confidence 223444445555555555555555444333333334444444444444333333
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.53 E-value=0.29 Score=45.39 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=72.6
Q ss_pred HHHhcCC--CCCcccHHHHHHHHHh-----CCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCC------------
Q 005265 106 RLFASMP--ERDQCSWNSMVSGFAQ-----HDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVD------------ 166 (705)
Q Consensus 106 ~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------------ 166 (705)
+.|.... ++|-.+|-.++..+.. .+.++-....++.|.+.|+.-|..+|+.||+.+-+..-
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444444 4555666666666643 35666667778889999999999999999988755432
Q ss_pred ----cHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCCh-HHHHHHHhccC
Q 005265 167 ----FKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRV-SCARRVFDGMR 213 (705)
Q Consensus 167 ----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 213 (705)
-.-+..++++|...|+.||-.+-..|++++.+.+-. .+..++.-.|+
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 233667788888888888888888888888777653 33344444443
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.48 E-value=0.98 Score=45.93 Aligned_cols=148 Identities=14% Similarity=0.047 Sum_probs=87.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005265 468 AQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEA 547 (705)
Q Consensus 468 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 547 (705)
-+..+...-++.-++.++ +.||-.+.-.++ +-..+..+.++.+++++..+.- ...+..- ......|..
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg-----E~~lg~s-~~~~~~g~~--- 246 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG-----EASLGKS-QFLQHHGHF--- 246 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH-----HHhhchh-hhhhcccch---
Confidence 345566666677777776 667665433332 3334556788888888776541 0000000 000111111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 548 KTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS--NSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 548 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
.+.+..-...|-..+-..+..++.+.|+.++|.+.++.+++..|. +..+...|+.++...+.+.++..++.+.-+...
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 111111112233444456777788889999999999999887665 445678899999999999999999988765444
Q ss_pred cc
Q 005265 626 VK 627 (705)
Q Consensus 626 ~~ 627 (705)
.+
T Consensus 327 pk 328 (539)
T PF04184_consen 327 PK 328 (539)
T ss_pred Cc
Confidence 33
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.48 E-value=2.3 Score=36.19 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhh
Q 005265 119 WNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACA 162 (705)
Q Consensus 119 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 162 (705)
...++..+...+.+.....+++.+...+. .+...++.++..++
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 34445555545555555555555544432 33334444444443
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=1.6 Score=41.27 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=88.1
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGS---LLAACKVHRNI 576 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 576 (705)
.....|+..+|...|+..... .|. ...--.++.+|...|+.++|..++..++.+-....|.. -+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 456789999999999988754 333 56677889999999999999999999975544444433 22333343333
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 577 MLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 577 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
.+... +++-...+|+|...-..++..|...|+.++|.+.+=.+.++.
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33322 233445699999999999999999999999999888887654
No 259
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.22 E-value=1.3 Score=45.91 Aligned_cols=154 Identities=12% Similarity=0.038 Sum_probs=92.8
Q ss_pred HHhCCChHHHHHHHH--HhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChH
Q 005265 126 FAQHDRFSEALGYFV--KMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVS 203 (705)
Q Consensus 126 ~~~~~~~~~a~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 203 (705)
..-.++++++.+... .+.. .+ ...-.+.++..+-+.|.++.|.++-. |+ ..-.....++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence 344666766655554 1211 11 23446666666777777777766633 22 22345556788999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 005265 204 CARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEK 283 (705)
Q Consensus 204 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 283 (705)
.|.++.++.. +...|..|.....++|+++-|.+.|.+..+ |..++-.|.-.|+.+.-.++.......|
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~- 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG- 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 9888877765 556899999999999999999998888765 5566666777788777777776666655
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 005265 284 LRNDLVLGNALVDMYAKCGKLNEARCVFD 312 (705)
Q Consensus 284 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (705)
-++....++.-.|+.++..+++.
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 13444555556677777775554
No 260
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.07 E-value=0.2 Score=43.90 Aligned_cols=89 Identities=15% Similarity=0.173 Sum_probs=68.9
Q ss_pred HHHHhcCChHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005265 536 DLLGRAGCLDEAKTLIEAM-P-MQP-----DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG 608 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 608 (705)
+-+.+.|++++|..-|..+ . .+| ..+.|..-..+..+.+.++.|+.-..++++++|....+....+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3456677777777776655 1 121 23445555566778899999999999999999998888888899999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 005265 609 RWGEVVRVRKLMRKRG 624 (705)
Q Consensus 609 ~~~~A~~~~~~~~~~~ 624 (705)
++++|++-++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999998654
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.03 E-value=3.1 Score=35.41 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCc
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGL 507 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 507 (705)
.++..+...+.+.....+++.+... +....|.++..|++.+ ..+.++.++. .++......+++.|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 4455555555555555555554322 3344555555555442 2233333321 1223333444555555555
Q ss_pred HHHHHHHHHH
Q 005265 508 VEEGRKYFSS 517 (705)
Q Consensus 508 ~~~a~~~~~~ 517 (705)
++++.-++..
T Consensus 85 ~~~~~~l~~k 94 (140)
T smart00299 85 YEEAVELYKK 94 (140)
T ss_pred HHHHHHHHHh
Confidence 5555554443
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.92 E-value=5.4 Score=37.12 Aligned_cols=219 Identities=18% Similarity=0.059 Sum_probs=144.9
Q ss_pred CChHHHHHHHHHhhhCCCC-cchhhHHHHHHHHhhcccHHHHHHHHHHHHHh-CCCCCCCCCCcHhHHHHHHHHHHhcCC
Q 005265 364 GENEEALGLFRLLKRESVC-PTHYTFGNLLNACANLADLQLGRQAHTHVVKH-GLRFLSGEESDIFVGNSLIDMYMKCGS 441 (705)
Q Consensus 364 g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~ 441 (705)
+....+...+......... .....+......+...+.+..+...+...... .. ......+......+...++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 110 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL------PNLAEALLNLGLLLEALGK 110 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc------cchHHHHHHHHHHHHHHhh
Confidence 3344444444444433221 12344555555666666666666666655542 11 3555666677777777777
Q ss_pred HHHHHHHHHccCCC---ChhHHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----ChhhHHHHHHHHhccCcHHHHHH
Q 005265 442 VEDGCRIFETMVER---DWVSWNAMIV-GCAQNGYGTEALGLFKKMLLCGEKP----DHVTMIGVLCACSHAGLVEEGRK 513 (705)
Q Consensus 442 ~~~A~~~~~~~~~~---~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~ 513 (705)
...+...+...... +......... .+...|+++.|...+.+... ..| ....+......+...++.+.+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 88888888776542 2222333333 68889999999999999866 344 22344444445677889999999
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005265 514 YFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIE 590 (705)
Q Consensus 514 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 590 (705)
.+...... ... ....+..+...+...+++++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..
T Consensus 189 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 189 LLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99988653 223 3677888888999999999999998887 44554 4555555556557778999999999999998
Q ss_pred CC
Q 005265 591 PS 592 (705)
Q Consensus 591 p~ 592 (705)
|.
T Consensus 267 ~~ 268 (291)
T COG0457 267 PD 268 (291)
T ss_pred cc
Confidence 87
No 263
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=0.73 Score=43.11 Aligned_cols=92 Identities=22% Similarity=0.190 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH----VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCM 534 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 534 (705)
|+.-+. +.+.|++..|...|...++.. |+. ..+--|..++...|++++|..+|..+.+.++-.|. +..+--|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 554443 334555677777776666632 222 13344556666666666666666666655444333 3444444
Q ss_pred HHHHHhcCChHHHHHHHHhC
Q 005265 535 VDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~ 554 (705)
.....+.|+.++|...|++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 44444444444444444443
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.70 E-value=6 Score=36.90 Aligned_cols=174 Identities=18% Similarity=0.120 Sum_probs=108.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVER------DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH--VTMIG 497 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ 497 (705)
...|+. +..-.+.|++++|.+.|+.+... ...+--.++-++.+.+++++|+...++.+.. -|+. ..|..
T Consensus 35 ~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~n~dY~~ 111 (254)
T COG4105 35 SELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHPNADYAY 111 (254)
T ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCChhHHH
Confidence 344443 34456789999999999999743 2334555677888999999999999998884 3433 34555
Q ss_pred HHHHHhc-------cCcHH---HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH--HH
Q 005265 498 VLCACSH-------AGLVE---EGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIW--GS 565 (705)
Q Consensus 498 ll~~~~~-------~g~~~---~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ 565 (705)
.|.+++. ..+.. .|..-|+.++.++ |+ +.-..+|...+.... |.... .+
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~---d~LA~~Em~ 172 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLN---DALAGHEMA 172 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHH---HHHHHHHHH
Confidence 5555442 12222 3333344444332 33 122222222222211 11222 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGP---YVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
+..-|.+.|.+..|..-++++++.-|+...+ +..|..+|.+.|-.++|.+.-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 4555889999999999999999987665544 5567778999999999988766554
No 265
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.68 E-value=4.1 Score=42.36 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=53.0
Q ss_pred hcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHH
Q 005265 331 KASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTH 410 (705)
Q Consensus 331 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 410 (705)
+.|+++.|.++.+... +...|..|.....+.|+++-|.+.|.+... +..++-.|...|+.+.-.++...
T Consensus 330 ~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 330 QLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 3444444444443332 445677777777777777777777765543 34455555666666666666666
Q ss_pred HHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHc
Q 005265 411 VVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFET 451 (705)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (705)
....|- ++....++.-.|+.++..+++.+
T Consensus 399 a~~~~~------------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERGD------------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHccC------------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 555552 33344444455666666655544
No 266
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=5.9 Score=36.44 Aligned_cols=85 Identities=15% Similarity=0.076 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCchHHH
Q 005265 532 TCMVDLLGRAGCLDEAKTLIEAMP-------MQPDA-VIWGSLLAACKVHRNIMLGEYVAKKLLEI----EPSNSGPYVL 599 (705)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~ 599 (705)
..+...|.+..++++|-..|.+-. .-|+. ..+.+.+-.+....|+..|++.++.-.++ .|++..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 333445555566655555444331 11222 12333333344455666666666665443 3444444555
Q ss_pred HHHHHHhcCChhHHHHHH
Q 005265 600 LSNMYAELGRWGEVVRVR 617 (705)
Q Consensus 600 l~~~~~~~g~~~~A~~~~ 617 (705)
|...|- .|+.+++.++.
T Consensus 234 LL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHhc-cCCHHHHHHHH
Confidence 555443 45555555443
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.51 E-value=12 Score=39.61 Aligned_cols=110 Identities=20% Similarity=0.107 Sum_probs=61.2
Q ss_pred ChHHHHHHHhhCCC--CCcccHHHH-HHHHHhcCCHHHHHHHHHhcCC-------CCeehHHHHHHHHHHcCChHHHHHH
Q 005265 303 KLNEARCVFDRMPI--RNVVSETSM-VSGYAKASSVKSARLMFTKMLE-------RNVVSWNALIAGYTQNGENEEALGL 372 (705)
Q Consensus 303 ~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~ 372 (705)
+.+.|.+++..+.. |+...|.-. .+.+...|++++|.+.|++... -....+--+...+.-..+|++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34445555554443 333333222 2233445555555566654432 1223344466677888999999999
Q ss_pred HHHhhhCCCCcchhhHHHHHHHH-hhcccH-------HHHHHHHHHHHH
Q 005265 373 FRLLKRESVCPTHYTFGNLLNAC-ANLADL-------QLGRQAHTHVVK 413 (705)
Q Consensus 373 ~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~-------~~a~~~~~~~~~ 413 (705)
|..+.+.. .-+..+|.-+..+| ...++. ++|..++.++..
T Consensus 328 f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99988754 34455555555544 344555 677777776643
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.40 E-value=0.27 Score=39.78 Aligned_cols=55 Identities=11% Similarity=-0.037 Sum_probs=51.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 569 ACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 569 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+....|+.+.|++.|.+++.+-|..+++|++-+..+--+|+.++|+.-+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3678899999999999999999999999999999999999999999999998763
No 269
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.37 E-value=0.43 Score=45.59 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=56.0
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHH
Q 005265 536 DLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEV 613 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 613 (705)
+-|.++|.+++|+..|... ...| |++++..-..+|.+...+..|+.-...++.++..-..+|..-+.+-...|+..+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3466677777777766654 4455 6666666666677777777777766666666655555666666666666666666
Q ss_pred HHHHHHHHh
Q 005265 614 VRVRKLMRK 622 (705)
Q Consensus 614 ~~~~~~~~~ 622 (705)
.+-.+...+
T Consensus 185 KkD~E~vL~ 193 (536)
T KOG4648|consen 185 KKDCETVLA 193 (536)
T ss_pred HHhHHHHHh
Confidence 666666553
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.28 E-value=0.18 Score=30.99 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999854
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.96 E-value=1 Score=43.02 Aligned_cols=159 Identities=13% Similarity=-0.006 Sum_probs=120.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH----HHHHHhcCCh
Q 005265 469 QNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCM----VDLLGRAGCL 544 (705)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~ 544 (705)
-+|+..+|-..++++++. .+-|...+...-++|...|+.+.-...++++... ..|+...|..+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999885 5556778888889999999999999999988653 35665555444 3455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHHhcCChhHHHHHHH
Q 005265 545 DEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS----NSGPYVLLSNMYAELGRWGEVVRVRK 618 (705)
Q Consensus 545 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 618 (705)
++|++.-++. ++.| |...-+++...+...|+..++.+...+-...-.. -...|...+-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5554 6667778888889999999999887765543111 22346677788888899999999998
Q ss_pred HHHhCCCccCCc
Q 005265 619 LMRKRGVVKQPG 630 (705)
Q Consensus 619 ~~~~~~~~~~~~ 630 (705)
.-.-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 766555555554
No 272
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.93 E-value=9.6 Score=37.04 Aligned_cols=88 Identities=15% Similarity=0.031 Sum_probs=42.7
Q ss_pred HHHHcC-ChHHHHHHHHHhhhC--------CCCcch-----hhHHHHHHHHhhcccHH---HHHHHHHHHHHhCCCCCCC
Q 005265 359 GYTQNG-ENEEALGLFRLLKRE--------SVCPTH-----YTFGNLLNACANLADLQ---LGRQAHTHVVKHGLRFLSG 421 (705)
Q Consensus 359 ~~~~~g-~~~~A~~~~~~m~~~--------g~~p~~-----~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~ 421 (705)
.....+ +++.|..++++..+. ...|+. .++..++.++...+..+ .|..+.+.+.....
T Consensus 44 ~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~----- 118 (278)
T PF08631_consen 44 SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG----- 118 (278)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-----
Confidence 334444 777777777665432 122222 23445555555555433 34444444433221
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC
Q 005265 422 EESDIFVGNSLIDMYMKCGSVEDGCRIFETMV 453 (705)
Q Consensus 422 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 453 (705)
..+.++-.-+..+.+.++.+.+.+++.+|.
T Consensus 119 --~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 119 --NKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred --CCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 223333334445555666666666666654
No 273
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.68 E-value=18 Score=39.62 Aligned_cols=174 Identities=14% Similarity=0.096 Sum_probs=98.0
Q ss_pred HHHHHHhhcCCChHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC
Q 005265 190 SALIDMYGKCGRVSCARRVFDGMRERNIV---SWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLA 266 (705)
Q Consensus 190 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 266 (705)
..-++..++..-++-|..+-+.-..+... .......-+.+.|++++|...|-+-... +.|. .++.-+....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 34455555666666666665543322111 1223334456678888888877665432 2332 2344444445
Q ss_pred ChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcc--cHHHHHHHHHhcCCHHHHHHHHHh
Q 005265 267 AFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVV--SETSMVSGYAKASSVKSARLMFTK 344 (705)
Q Consensus 267 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~ 344 (705)
+...-..+++.+.+.| + .+...-+.|+++|.+.++.+.-.+..+... .+.. -....+..+.+.+-.++|..+-.+
T Consensus 412 ~IknLt~YLe~L~~~g-l-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKG-L-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHcc-c-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 5555666677777776 3 344445678888888888888887777666 2222 234555666666666666555544
Q ss_pred cCCCCeehHHHHHHHHHHcCChHHHHHHHHHh
Q 005265 345 MLERNVVSWNALIAGYTQNGENEEALGLFRLL 376 (705)
Q Consensus 345 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 376 (705)
... +... +--.+-..+++++|++.+..|
T Consensus 489 ~~~-he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 332 2222 222233456777777777655
No 274
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.61 E-value=0.78 Score=31.02 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHHcCc
Q 005265 597 YVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGY 672 (705)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~ 672 (705)
...++-++.+.|++++|++..+.+.+ .+|.+.+.......+..+|.+.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 56788889999999999999999884 467788888888888889988873
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.45 E-value=8 Score=37.77 Aligned_cols=202 Identities=14% Similarity=0.037 Sum_probs=111.0
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHH-Hh---hhCC-CCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCc
Q 005265 351 VSWNALIAGYTQNGENEEALGLFR-LL---KRES-VCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESD 425 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~-~m---~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 425 (705)
.++..+..+.++.|.+++++..-- .| .+.. -.---..|..+..++.+..++.+++.+-..-....- ....+..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpg--t~~~~~~ 121 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPG--TRAGQLG 121 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCC--CCccccc
Confidence 345556667777777776654311 11 1100 000112344444444444455555544443332211 0000111
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCh--
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVE-------R--DWVSWNAMIVGCAQNGYGTEALGLFKKMLLC--GEKPDH-- 492 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~-- 492 (705)
-...-++..++...+.++++++.|+...+ + ....+-.|...|.+..++++|.-+..+..+. .+..+.
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 23344566777777788888888876542 1 2346777888888888888888776665441 122111
Q ss_pred hhH-----HHHHHHHhccCcHHHHHHHHHHhHHh---cCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 493 VTM-----IGVLCACSHAGLVEEGRKYFSSMSKE---HGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 493 ~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
.-| ..+.-++-..|..-.|.+..++..+- +|-.|. .....++.+.|...|+.+.|..-|+..
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122 22334566677777777777665432 233333 455667889999999999888877764
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.44 E-value=4.6 Score=34.72 Aligned_cols=90 Identities=18% Similarity=0.089 Sum_probs=58.5
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHH
Q 005265 500 CACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMP-MQPDAVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~ 577 (705)
..-...++.+++..+++.+. -+.|. ...-..-...+.+.|++.+|+.+|+++. -.|....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33456778888888888774 35666 3333344556788899999999999883 3355555566676666655544
Q ss_pred HHHHHHHHHHhhCCC
Q 005265 578 LGEYVAKKLLEIEPS 592 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~ 592 (705)
.-....+++++..|+
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 555556666666553
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.31 E-value=0.28 Score=29.46 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
+|..+...+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666677777777777777777777764
No 278
>PRK15331 chaperone protein SicA; Provisional
Probab=92.30 E-value=1.6 Score=37.66 Aligned_cols=87 Identities=14% Similarity=0.001 Sum_probs=47.7
Q ss_pred HHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHh
Q 005265 359 GYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMK 438 (705)
Q Consensus 359 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 438 (705)
-+...|++++|..+|+-+.-.+. -+..-+..|..+|-..++++.|...+......+. .|+...--...+|..
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-------~dp~p~f~agqC~l~ 117 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-------NDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------CCCCccchHHHHHHH
Confidence 34566777777777766554331 1222233444444455666677666666555443 233334445566666
Q ss_pred cCCHHHHHHHHHccC
Q 005265 439 CGSVEDGCRIFETMV 453 (705)
Q Consensus 439 ~g~~~~A~~~~~~~~ 453 (705)
.|+.+.|...|....
T Consensus 118 l~~~~~A~~~f~~a~ 132 (165)
T PRK15331 118 MRKAAKARQCFELVN 132 (165)
T ss_pred hCCHHHHHHHHHHHH
Confidence 666666666665544
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.83 E-value=0.34 Score=29.73 Aligned_cols=28 Identities=7% Similarity=-0.040 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
+|..|...|.+.|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886654
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.48 E-value=17 Score=36.72 Aligned_cols=150 Identities=11% Similarity=-0.022 Sum_probs=82.3
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hh
Q 005265 455 RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP---DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL--KD 529 (705)
Q Consensus 455 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 529 (705)
....+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+..+|...++..... .+... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345678888888888999999998888887743222 2233444455566778888888888777652 11111 11
Q ss_pred HHHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 530 HYTCMVDLLGRAGCLDEAKTL-IEAMPMQPDAVIWGSLLAACKVH------RNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
....+...+.. ..+..... ........-..++..+...+... ++.+.+...|.++.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000011222233333333 78899999999999999988888888777
Q ss_pred HHHhc
Q 005265 603 MYAEL 607 (705)
Q Consensus 603 ~~~~~ 607 (705)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76554
No 281
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.37 E-value=26 Score=38.61 Aligned_cols=127 Identities=10% Similarity=0.015 Sum_probs=76.3
Q ss_pred cCChHHHHHHHHHHHHC-CCCCChh--hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005265 470 NGYGTEALGLFKKMLLC-GEKPDHV--TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDE 546 (705)
Q Consensus 470 ~g~~~~A~~~~~~m~~~-g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 546 (705)
..+.+.|..++...... +..+... ....+.......+..+++...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 45678899999887554 3333332 3334433333333356677777654322 2244445555556668999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005265 547 AKTLIEAMP--MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNM 603 (705)
Q Consensus 547 A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 603 (705)
+...+..|+ ..-...-..-+..+....|+.++|...|+++.. +. +.|-.|+.-
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~--~fYG~LAa~ 385 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QR--GFYPMVAAQ 385 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--CcHHHHHHH
Confidence 999999984 122233334466666778999999999999743 32 345555443
No 282
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.19 E-value=2.6 Score=34.72 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHh-hCCCCC-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCCC
Q 005265 574 RNIMLGEYVAKKLLE-IEPSNS-GPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHP 651 (705)
Q Consensus 574 g~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (705)
.+..++..+++.+.+ -.|... .....|+-.+.+.|+|++++++.+...+ ..|
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--------------------------~e~ 102 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--------------------------TEP 102 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--------------------------hCC
Confidence 345666777777765 334322 2334566667777777777777776663 234
Q ss_pred ChhHHHHHHHHHHHHHHHcCcc
Q 005265 652 LNKEIYLVLKMLTREMKRVGYV 673 (705)
Q Consensus 652 ~~~~~~~~l~~l~~~~~~~g~~ 673 (705)
++.++..+-+.+..+|.+.|++
T Consensus 103 ~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 103 NNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred CcHHHHHHHHHHHHHHhhccee
Confidence 4444555555566677766654
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.97 E-value=10 Score=33.14 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=24.5
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHH
Q 005265 237 LEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGL 272 (705)
Q Consensus 237 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 272 (705)
++.++.+.+.|+.|+...+..++..+.+.|.+..-.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ 49 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH 49 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 345556666777777777777777777777765433
No 284
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.95 E-value=0.18 Score=43.30 Aligned_cols=86 Identities=10% Similarity=0.186 Sum_probs=63.7
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHHHhcCChhH
Q 005265 24 KLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDD 103 (705)
Q Consensus 24 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 103 (705)
.+++.+.+.+.+......++.+...+...+....+.++..|++.++.+...+.++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46777778889999999999999888778899999999999999988999888885433 333456666666666666
Q ss_pred HHHHHhcCC
Q 005265 104 ASRLFASMP 112 (705)
Q Consensus 104 A~~~~~~~~ 112 (705)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 666655544
No 285
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.70 E-value=13 Score=34.02 Aligned_cols=133 Identities=14% Similarity=0.159 Sum_probs=70.1
Q ss_pred hcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHH
Q 005265 438 KCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSS 517 (705)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 517 (705)
+.+++++|...++. -|..|...|++..|-.....+-+- ...+. .+++.|+..++.
T Consensus 85 kk~~~~eAv~cL~~-----------aieIyt~~Grf~~aAk~~~~iaEi-yEsdl-------------~d~ekaI~~YE~ 139 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEK-----------AIEIYTDMGRFTMAAKHHIEIAEI-YESDL-------------QDFEKAIAHYEQ 139 (288)
T ss_pred hccChHHHHHHHHH-----------HHHHHHhhhHHHHHHhhhhhHHHH-HhhhH-------------HHHHHHHHHHHH
Confidence 34466666665543 356677777777666554444331 11121 233444444443
Q ss_pred hHHhcC-CCCChhHHHHH---HHHHHhcCChHHHHHHHHhC---CCCCCHHHHHH---HHHH--HHh-cCCHHHHHHHHH
Q 005265 518 MSKEHG-LAPLKDHYTCM---VDLLGRAGCLDEAKTLIEAM---PMQPDAVIWGS---LLAA--CKV-HRNIMLGEYVAK 584 (705)
Q Consensus 518 ~~~~~~-~~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---l~~~--~~~-~g~~~~a~~~~~ 584 (705)
.-.=+. -+.+...--++ .+.-...+++.+|+++|++. .+..+..-|.. ++.+ |.- ..|.-.+...++
T Consensus 140 Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALe 219 (288)
T KOG1586|consen 140 AAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALE 219 (288)
T ss_pred HHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHH
Confidence 321111 11122222233 33345678899999999887 23333333322 2332 333 367777888889
Q ss_pred HHHhhCCCCCc
Q 005265 585 KLLEIEPSNSG 595 (705)
Q Consensus 585 ~~~~~~p~~~~ 595 (705)
+-.+++|.-..
T Consensus 220 ky~~~dP~F~d 230 (288)
T KOG1586|consen 220 KYQELDPAFTD 230 (288)
T ss_pred HHHhcCCcccc
Confidence 98899997544
No 286
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.63 E-value=13 Score=34.00 Aligned_cols=91 Identities=7% Similarity=-0.071 Sum_probs=49.2
Q ss_pred HHHHHHHhc-CChHHHHHHHHhCC-----CCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhhCCCCCch-------
Q 005265 533 CMVDLLGRA-GCLDEAKTLIEAMP-----MQPDAVIWGSLLAA---CKVHRNIMLGEYVAKKLLEIEPSNSGP------- 596 (705)
Q Consensus 533 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~p~~~~~------- 596 (705)
.+...|... .++++|+..|+... -+.+...--.++.. -...+++.+|..+|+++....-++...
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 445555544 56667777776651 12222222233333 456788999999999987765444321
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 597 YVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+..-+-++.-.++.-.+...+++..+.
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 222223333335655666666666543
No 287
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.57 E-value=8.6 Score=31.65 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=11.9
Q ss_pred hcccHHHHHHHHHHHHHh
Q 005265 397 NLADLQLGRQAHTHVVKH 414 (705)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~ 414 (705)
-.|..+++.++..+....
T Consensus 14 ldG~V~qGveii~k~v~S 31 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS 31 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHcCc
Confidence 356777778887777664
No 288
>PRK09687 putative lyase; Provisional
Probab=90.39 E-value=18 Score=35.09 Aligned_cols=26 Identities=15% Similarity=-0.120 Sum_probs=12.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005265 565 SLLAACKVHRNIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~~~~~~~p 591 (705)
..+.++...|+. +|...+.++.+.+|
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 344444555543 45555555555444
No 289
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.38 E-value=2.2 Score=35.92 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=38.7
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 572 VHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 572 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
..++.+.++.++..+.-+.|+.+..-..-++++...|+|++|.++++.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46677777777777777777777777777777777777777777777776554
No 290
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.32 E-value=0.94 Score=29.28 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV 493 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 493 (705)
+|..+...|...|++++|.++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 455566666666666666666666666 445543
No 291
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.17 E-value=1.6 Score=41.52 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
++..++..+...|+++.+...++++++.+|-+...|..+..+|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4445555566666777777777777777777777777777777777777777777776654
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.15 E-value=6.6 Score=34.98 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVERD------WVSWNAMIVGCAQNGYGTEALGLFKKML 484 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 484 (705)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555555555555555555544321 1233444444444555555554444443
No 293
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.70 E-value=15 Score=34.81 Aligned_cols=59 Identities=14% Similarity=0.055 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+-....|...|.+.+|.++.++++.++|-+...+-.|...++..|+--.|.+.++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34455688999999999999999999999999999999999999998889888888754
No 294
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.53 E-value=28 Score=35.96 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=95.5
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGN 430 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (705)
...-+++..+.++-.+.-...+-.+|...| -+...|..++++|... ..+.-..+|..+++..+ .|+....
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-------nDvv~~R 136 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-------NDVVIGR 136 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-------hhHHHHH
Confidence 344556777777777777777777887754 4566777777777776 55666777888877775 5666667
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCC------Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHH
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVER------DW---VSWNAMIVGCAQNGYGTEALGLFKKMLLC-GEKPDHVTMIGVLC 500 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~ 500 (705)
.|+..|.+ ++.+.+...|.++..+ +. ..|..++..- ..+.+..+.+..++... |..--.+.+.-+-.
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 77777776 7777777777765321 11 1454444311 23444555555555442 33333344444555
Q ss_pred HHhccCcHHHHHHHHHHhHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSK 520 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~ 520 (705)
-|....++++|++++..+.+
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 214 KYSENENWTEAIRILKHILE 233 (711)
T ss_pred HhccccCHHHHHHHHHHHhh
Confidence 56666666666666665543
No 295
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.25 E-value=2.1 Score=32.84 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=35.2
Q ss_pred hhHHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHH-HcCCCCchhhHHHHHH
Q 005265 3 TQRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARII-KSQFASEIFIQNRLID 62 (705)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~ 62 (705)
+++-+.++....+-|++......|++|.|.+++..|.++++-+. +.|. +..+|..+++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44555555566666777777777777777777777777777554 3332 3345555544
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.18 E-value=38 Score=37.02 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=43.6
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 005265 187 YMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACAS 264 (705)
Q Consensus 187 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 264 (705)
.++...|+.+.-.|+++.|-+..-.|-..+..-|.-.+..+...++......+ +.....+.+...|-.++..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 34556666667777777777777777777777777666666666655443322 2221122344456555555544
No 297
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.15 E-value=38 Score=37.00 Aligned_cols=166 Identities=15% Similarity=0.120 Sum_probs=89.1
Q ss_pred HHHHHccCChhhHHHHHhccCC--C---ChhhHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHH
Q 005265 61 IDVYAKCGCLYGARKVFDKMSN--K---NVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEA 135 (705)
Q Consensus 61 l~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 135 (705)
++.+.+.+.+++|.++-..... + -...+..+|..+.-.|++++|-...-.|...+..-|..-+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 4555666777777777665543 1 2245667777777778888887777777777777777777766666655433
Q ss_pred HHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCC
Q 005265 136 LGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRER 215 (705)
Q Consensus 136 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 215 (705)
. .-+.....+.+...|..+|-.+.. .....+++.+.+. +++..+-...+++- .. -+++-. .
T Consensus 443 a---~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~W--p~~Lys~l~iisa~--~~-------q~~q~S-e 503 (846)
T KOG2066|consen 443 A---PYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEW--PGHLYSVLTIISAT--EP-------QIKQNS-E 503 (846)
T ss_pred h---ccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhC--ChhhhhhhHHHhhc--ch-------HHHhhc-c
Confidence 2 223333333556666666666654 1222223322222 22222222222111 00 011111 1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005265 216 NIVSWNSLITCYEQNGPASDALEVFVRMMA 245 (705)
Q Consensus 216 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 245 (705)
+...-..|+..|...+++..|+.++-..++
T Consensus 504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 504 STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 111223377778888888888887766654
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.79 E-value=1.1 Score=26.89 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD 491 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 491 (705)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566677777777777777777777776 4454
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.75 E-value=3.3 Score=35.62 Aligned_cols=70 Identities=21% Similarity=0.182 Sum_probs=34.5
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 540 RAGCLDEAKTLIEAM-PMQPDAVIWGSLLAA-CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 540 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
+.++.+++..++..+ .+.|.......+-.- +..+|++.+|.++++.+.+-.|..+..-..++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 445555555555555 234443333222211 4455566666666666555555554444445555544444
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.61 E-value=0.75 Score=27.46 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 595 GPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
..+..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999998753
No 301
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.61 E-value=18 Score=32.69 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=93.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCM 534 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 534 (705)
-+..||-+.--+...|+++.|.+.|+...+ +.|.. .+...-.-++...|++.-|.+=|...-+. .|+.. |.+|
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DP-fR~L 171 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDP-FRSL 171 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCCh-HHHH
Confidence 456788888888999999999999999988 55543 23222223455678998888766544332 33321 2222
Q ss_pred H-HHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCC-------CchHHHHHHHH
Q 005265 535 V-DLLGRAGCLDEAKTL-IEAMPMQPDAVIWGSLLAACK-VHRNIMLGEYVAKKLLEIEPSN-------SGPYVLLSNMY 604 (705)
Q Consensus 535 ~-~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~ 604 (705)
. -.-.+.-+..+|..- .++.. ..|..-|...+-.+. -+=.. +.+++++.....++ ..+|..|+.-|
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE---ETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH---HHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 2 122233456666553 44442 345555555444422 11111 22333333322222 13588899999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 005265 605 AELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 605 ~~~g~~~~A~~~~~~~~~~ 623 (705)
...|..++|..+|+-....
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 9999999999999887743
No 302
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.20 E-value=3.6 Score=39.31 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=57.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChhhHH
Q 005265 425 DIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLL-----CGEKPDHVTMI 496 (705)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 496 (705)
-..++..++..+..+|+.+.+.+.+++... -+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345677788888888888888888888763 3677888888999999988888888888765 36666665544
Q ss_pred HHHHH
Q 005265 497 GVLCA 501 (705)
Q Consensus 497 ~ll~~ 501 (705)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44433
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.84 E-value=30 Score=34.96 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 558 PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEP----SNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 558 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
....+|..+...++++|.++.|...+.++.+.++ ..+......+..+...|+..+|...++......+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3456888899999999999999999999988642 2455677789999999999999999988887333
No 304
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=87.72 E-value=18 Score=35.89 Aligned_cols=106 Identities=16% Similarity=0.245 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCC------CHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-------ch
Q 005265 532 TCMVDLLGRAGCLDEAKTLIEAMPMQP------DAVI--WGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS-------GP 596 (705)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~~~~~p------~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~ 596 (705)
..|...+..+|+.++|..++.+.+++. .... ..--+..|...+|+-.|.-+-+++....-+.+ ..
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 446677889999999999999886331 1111 11124558888999999988888876522222 35
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEEC
Q 005265 597 YVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEIL 637 (705)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 637 (705)
|..++.+..+.+.|=++.+.++...+-|..+....-|+.+.
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL 255 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVL 255 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhh
Confidence 88899999999999999999999988776665444466543
No 305
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.66 E-value=1.2 Score=26.30 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=15.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
+..++...|++++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455555666666666666555554
No 306
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.48 E-value=50 Score=36.38 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=39.1
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHH
Q 005265 358 AGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYM 437 (705)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 437 (705)
..+.-.|+++.|++.+-. ..+...+.+++...+.-+.-..-.+... ..+..... + .+...-+..||..|.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~----~-~~~~ln~arLI~~Y~ 335 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDP----G-DPPPLNFARLIGQYT 335 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--------------------------------HHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecC----C-CCCCcCHHHHHHHHH
Confidence 445667888998888766 2334566666666665443322221111 11111110 0 122245667777776
Q ss_pred h---cCCHHHHHHHHHccC
Q 005265 438 K---CGSVEDGCRIFETMV 453 (705)
Q Consensus 438 ~---~g~~~~A~~~~~~~~ 453 (705)
+ ..++.+|.++|--+.
T Consensus 336 ~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 336 RSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HTTTTT-HHHHHHHHHGGG
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 5 457788888876654
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.08 E-value=1.6 Score=27.56 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLE 588 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 588 (705)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444445555555555555554443
No 308
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.06 E-value=12 Score=32.57 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHH-----HHHhCCChHHHHHHHHHhHhCCCCC
Q 005265 86 FTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVS-----GFAQHDRFSEALGYFVKMHSENFAL 149 (705)
Q Consensus 86 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~a~~~~~~m~~~g~~p 149 (705)
..|..-++ +++.++.++|+.-|..+.+.+--.|-.|.. .....|+...|...|++.-.....|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P 127 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP 127 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc
Confidence 34444443 355666777777776666655554544332 3445666777777777665543333
No 309
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.97 E-value=7.4 Score=35.09 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=68.6
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDA-VIWGSLLAACKVHRNIML 578 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~ 578 (705)
|-..|.+.-|+-=|.+.. .+.|+ +.+||.|.--+...|+++.|.+.|+.. ...|.. .+...-.-++.--|++..
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 334455566665565443 56777 778888888888888888888888877 555532 222221222334578888
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcC--ChhHHHHHH
Q 005265 579 GEYVAKKLLEIEPSNSGPYVLLSNMYAELG--RWGEVVRVR 617 (705)
Q Consensus 579 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~ 617 (705)
|.+-+.+..+-+|+||. .-.|+|...- +..+|..-+
T Consensus 152 Aq~d~~~fYQ~D~~DPf---R~LWLYl~E~k~dP~~A~tnL 189 (297)
T COG4785 152 AQDDLLAFYQDDPNDPF---RSLWLYLNEQKLDPKQAKTNL 189 (297)
T ss_pred hHHHHHHHHhcCCCChH---HHHHHHHHHhhCCHHHHHHHH
Confidence 88888888888888863 3345554433 344554433
No 310
>PRK09687 putative lyase; Provisional
Probab=86.77 E-value=32 Score=33.41 Aligned_cols=120 Identities=8% Similarity=-0.014 Sum_probs=55.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcC-CHHHHHH-HHHhcCCCCeehHHHHHHHHHHcC
Q 005265 287 DLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKAS-SVKSARL-MFTKMLERNVVSWNALIAGYTQNG 364 (705)
Q Consensus 287 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g 364 (705)
+..+....+.++.+.|+.+....+..-+..++...-...+.++.+.+ ....+.. +...+..++...-...+.++.+.|
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 44444455555555554332222233333333333333333343332 1122222 233334455555666666676666
Q ss_pred ChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHH
Q 005265 365 ENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVK 413 (705)
Q Consensus 365 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 413 (705)
. ..|+..+-...+.+. ....++.++...|+. .+...+..+.+
T Consensus 221 ~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 221 D-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred C-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 6 345555555554332 233555666666664 45555555554
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.34 E-value=71 Score=36.96 Aligned_cols=111 Identities=16% Similarity=0.097 Sum_probs=51.7
Q ss_pred HHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHH
Q 005265 433 IDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGR 512 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 512 (705)
++.--+.|-+.+|+.++..-.++-...|.+...-+.....+++|.-.|+..-+ ..-.+.+|..+|+|++|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 33334444455555544333222233333333444444555555555543222 122345555666666666
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 513 KYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 513 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
.+..++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 66654421 10001222245555666666666666666555
No 312
>PRK10941 hypothetical protein; Provisional
Probab=86.30 E-value=3.9 Score=39.10 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
..+.+-.+|.+.++++.|.++.+.++.+.|+++.-+...+-+|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44566777999999999999999999999999988889999999999999999999888754
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.29 E-value=1.4 Score=27.77 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 595 GPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3578999999999999999999999875
No 314
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.15 E-value=3.6 Score=32.00 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=33.5
Q ss_pred hhHHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005265 3 TQRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDV 63 (705)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 63 (705)
+++-+..+....+-|++......|++|.|.+++..|.++++-+...- .+...+|..+++-
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 34445555566666777777777777777777777777777664331 2333356655543
No 315
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.95 E-value=35 Score=33.13 Aligned_cols=17 Identities=0% Similarity=0.061 Sum_probs=8.7
Q ss_pred cCCChhhHHHHHHHHHH
Q 005265 31 RSKSVSDTRRVHARIIK 47 (705)
Q Consensus 31 ~~~~~~~a~~~~~~~~~ 47 (705)
++|+++.|..++.++..
T Consensus 5 ~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhCCHHHHHHHHHHhhh
Confidence 44555555555555443
No 316
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.83 E-value=1.2 Score=24.89 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRK 618 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~ 618 (705)
....++..+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46678888888888888888765
No 317
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.79 E-value=62 Score=35.80 Aligned_cols=260 Identities=12% Similarity=0.016 Sum_probs=112.8
Q ss_pred HHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHH
Q 005265 91 IITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMG 170 (705)
Q Consensus 91 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 170 (705)
.+..+.+.+++....+.+.. +..+...--....+....|+.++|....+.+-..|.. .+..+..++..+..
T Consensus 105 ~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~------- 175 (644)
T PRK11619 105 FVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQ------- 175 (644)
T ss_pred HHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHH-------
Confidence 34445566667666663322 2234433444555666677766666666666554432 23344444444433
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 005265 171 TQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEP 250 (705)
Q Consensus 171 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 250 (705)
.|.-.+...+.- +......|+...|..+...+..........++..+. +...+..++.. +.|
T Consensus 176 ---------~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~-----~~~ 237 (644)
T PRK11619 176 ---------SGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFART-----TGP 237 (644)
T ss_pred ---------cCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhc-----cCC
Confidence 332222222222 223334455555555555442211111222222221 12222221111 112
Q ss_pred CHhHHHHHHHHHH--ccCChHHHHHHHHHHHHcCCCCCCh--hHHHHHHHHHHhcCChHHHHHHHhhCCCC--CcccHHH
Q 005265 251 DEVTLASVVSACA--SLAAFKEGLQIHARLMRCEKLRNDL--VLGNALVDMYAKCGKLNEARCVFDRMPIR--NVVSETS 324 (705)
Q Consensus 251 ~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 324 (705)
+...-..++.++. ...+.+.|...+........+.+.. .+...+.......+..+++...+...... +......
T Consensus 238 ~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~ 317 (644)
T PRK11619 238 TDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLER 317 (644)
T ss_pred ChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHH
Confidence 2211111111111 2234566666666554443232222 22333333333332245555565554322 3333333
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC--CeehHH-HHHHHHHHcCChHHHHHHHHHhh
Q 005265 325 MVSGYAKASSVKSARLMFTKMLER--NVVSWN-ALIAGYTQNGENEEALGLFRLLK 377 (705)
Q Consensus 325 li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~-~li~~~~~~g~~~~A~~~~~~m~ 377 (705)
-+..-.+.++++.+...+..|+.. +...|. =+..++...|+.++|...|+...
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344444666777766777666432 111121 24455555677777777777753
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.76 E-value=4.9 Score=36.00 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=51.9
Q ss_pred HhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CC---CCchHHHHHHHHHhcCChhH
Q 005265 539 GRAGCLDEAKTLIEAMPMQP--DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIE-PS---NSGPYVLLSNMYAELGRWGE 612 (705)
Q Consensus 539 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~---~~~~~~~l~~~~~~~g~~~~ 612 (705)
.+.|+ ++|.+.|-.+.-.| +....-..+..|....|.+++..++.+++++. |+ ++..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 55666666663233 23333334444555788999999999999983 22 57789999999999999998
Q ss_pred HH
Q 005265 613 VV 614 (705)
Q Consensus 613 A~ 614 (705)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.62 E-value=1.9 Score=25.71 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+|..++.+|...|++++|.+.+++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 588999999999999999999998875
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.39 E-value=10 Score=33.33 Aligned_cols=47 Identities=19% Similarity=0.108 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC----hhHHHHHHHHHH
Q 005265 575 NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR----WGEVVRVRKLMR 621 (705)
Q Consensus 575 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~ 621 (705)
.+++|..-|++++.++|+...++.+++++|...|. ..+|.++|++..
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 34667888888899999999999999999987653 345555555554
No 321
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=85.21 E-value=1.6 Score=44.27 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=71.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHH
Q 005265 536 DLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLL-AACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEV 613 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 613 (705)
+-+.+.+.++.|..++.++ .+.||...|.+.- .++.+.+++..|..-+.++++.+|.....|..-+..+.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3445667788888888776 6778766665554 5688899999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 005265 614 VRVRKLMR 621 (705)
Q Consensus 614 ~~~~~~~~ 621 (705)
...++...
T Consensus 92 ~~~l~~~~ 99 (476)
T KOG0376|consen 92 LLDLEKVK 99 (476)
T ss_pred HHHHHHhh
Confidence 99998776
No 322
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.85 E-value=13 Score=33.24 Aligned_cols=95 Identities=15% Similarity=0.058 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh------
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV--TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKD------ 529 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~------ 529 (705)
..+..+..-|++.|+.+.|++.|.++.+....|... .+..+++.+...+++..+.....++.....-..|..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456778899999999999999999999976666654 678888999999999999988887754322111222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
+|..| .+...|++.+|-+.|-..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 22222 234578999999988776
No 323
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.69 E-value=42 Score=32.87 Aligned_cols=49 Identities=8% Similarity=0.221 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc--cC----ChHHHHHHHHHHHHcC
Q 005265 234 SDALEVFVRMMASGIEPDEVTLASVVSACAS--LA----AFKEGLQIHARLMRCE 282 (705)
Q Consensus 234 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~ 282 (705)
++.+++++.|.+.|++-+..+|.+..-.... .. ....+..+|+.|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 4566788888999988888887664444333 11 2345667777777654
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.12 E-value=20 Score=30.47 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=38.4
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 005265 504 HAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMPMQP-DAVIWGSLLAACKV 572 (705)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~ 572 (705)
..++.+++..+++.|. -+.|+ ...-..-...+...|++++|..+|++..-.+ ....-.+|+..|..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 4677777777777774 34555 2222333445677888888888888874332 33333344444433
No 325
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.71 E-value=16 Score=28.42 Aligned_cols=59 Identities=20% Similarity=0.169 Sum_probs=37.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhH
Q 005265 327 SGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTF 388 (705)
Q Consensus 327 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 388 (705)
..+...|++++|..+.+....||...|-++.. .+.|..+++..-+.+|...| .|...+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34556666666667777777777777766543 35677777777777777666 4444444
No 326
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.66 E-value=1.6 Score=26.30 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=18.1
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGC 446 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~ 446 (705)
+.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 467777777887887777777775
No 327
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.57 E-value=10 Score=36.38 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=75.5
Q ss_pred cCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC-C------CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 005265 180 SRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE-R------NIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDE 252 (705)
Q Consensus 180 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 252 (705)
.|.+....+...++..-....+++.+...+-+++. | +...+ ++++.+. .-++++++.++..=.+-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 45555666677777777777888888888777764 2 22222 2333333 34677999998888889999999
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 005265 253 VTLASVVSACASLAAFKEGLQIHARLMRCE 282 (705)
Q Consensus 253 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 282 (705)
++++.+++.+.+.+++..|.++.-.++...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999998888887764
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.37 E-value=21 Score=37.55 Aligned_cols=151 Identities=17% Similarity=0.043 Sum_probs=100.5
Q ss_pred HhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHH
Q 005265 437 MKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFS 516 (705)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 516 (705)
.-.|+++.|..++..+++ ..-+.++.-+.+.|-.++|+++- ..||.. | ....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~r-F----elal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQR-F----ELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhhh-h----hhhhhcCcHHHHHHHHH
Confidence 345777777777666653 23345556666777777776642 223322 2 22346789999988776
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 005265 517 SMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 517 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 596 (705)
+. .+..-|..|.++....|++..|.+.|.... -|..|+-.+...|+.+.-..+.....+....|
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 44 245679999999999999999999998864 35566666777777665555555554444444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 005265 597 YVLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
.-..+|...|+++++.+++..-
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHhc
Confidence 3345677889999999888653
No 329
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.32 E-value=33 Score=30.66 Aligned_cols=90 Identities=9% Similarity=-0.017 Sum_probs=54.4
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH-----HHHHHHhcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHH
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTC-----MVDLLGRAGCLDEAKTLIEAMPMQPDAVI--WGSLLAACK 571 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~ 571 (705)
...+...|++++|...++..... |....+.. |.......|.+++|+..++... .++... ...-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHH
Confidence 34556677777777777755421 22223333 3455667788888888877764 232222 222334477
Q ss_pred hcCCHHHHHHHHHHHHhhCCCC
Q 005265 572 VHRNIMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 572 ~~g~~~~a~~~~~~~~~~~p~~ 593 (705)
..|+-++|+..|+++++.+++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HcCchHHHHHHHHHHHHccCCh
Confidence 7788888888888888776443
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.08 E-value=1.8 Score=25.50 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
++..++.++.+.|++++|.+.++++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678999999999999999999998864
No 331
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.74 E-value=8.4 Score=30.04 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 005265 475 EALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVD 536 (705)
Q Consensus 475 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 536 (705)
+..+-++.+....+.|+.....+.+.+|-+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555666666677889999999999999999999999999998866544 33336766654
No 332
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.69 E-value=10 Score=29.28 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 005265 473 GTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVD 536 (705)
Q Consensus 473 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 536 (705)
.-++.+-++.+....+.|+.....+.++||-+.+++..|.++|+.+..+.+ .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 345666667777777899999999999999999999999999997754433 24445665543
No 333
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.29 E-value=4.4 Score=37.12 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=38.2
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCCHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPLK-DHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLLAA-CKVHRNIML 578 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~g~~~~ 578 (705)
|.....++.|+..+.+.+ -+.|.. .-|..-+-.+.+..+++.+..=-.+. .+.||.+--...++. ......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444445555555444333 344553 23333344444555555444333222 444554443333333 334445555
Q ss_pred HHHHHHHHHh
Q 005265 579 GEYVAKKLLE 588 (705)
Q Consensus 579 a~~~~~~~~~ 588 (705)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 334
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.14 E-value=18 Score=32.32 Aligned_cols=60 Identities=17% Similarity=0.032 Sum_probs=33.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 536 DLLGRAGCLDEAKTLIEAM-PMQPDA-VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
.++.+.+.++.|++-..+. .+.|.. ..+..-..+|.+...++.|+.-|+++++.+|....
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 3444555555555444333 333321 12222233466667788888888888888887643
No 335
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=81.71 E-value=76 Score=33.70 Aligned_cols=135 Identities=10% Similarity=0.025 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhcCCC--CCcc-cHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhh
Q 005265 86 FTWNSIITGLLKWGFIDDASRLFASMPE--RDQC-SWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACA 162 (705)
Q Consensus 86 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 162 (705)
..|+.+|.---...+++.+..+++.+.. |... -|-.....=.+.|..+.+.++|++-.. |++.+...|...+..+.
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLK 124 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHh
Confidence 4455555544444445555555555543 3222 233333344556777778888877765 35556666666665544
Q ss_pred -CCCCcHHHHHHHHHHHHc-CCC-CChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHH
Q 005265 163 -GSVDFKMGTQVHALLSKS-RYS-SDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWN 221 (705)
Q Consensus 163 -~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 221 (705)
..|+.+.....|+..+.. |.. .....|...|..-..++++.....+++++.+--...|+
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~ 186 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN 186 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH
Confidence 456677777777776664 321 23445666666666777777777777777653333333
No 336
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.44 E-value=1.2 Score=38.18 Aligned_cols=84 Identities=12% Similarity=0.137 Sum_probs=50.4
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHH
Q 005265 157 ALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDA 236 (705)
Q Consensus 157 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 236 (705)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..+-+.|.++.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555556666666667777777665555677777788888887777777777763322 3334455555555555555
Q ss_pred HHHHHHH
Q 005265 237 LEVFVRM 243 (705)
Q Consensus 237 ~~~~~~m 243 (705)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555443
No 337
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.14 E-value=3.5 Score=23.44 Aligned_cols=29 Identities=21% Similarity=0.025 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005265 563 WGSLLAACKVHRNIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 563 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 591 (705)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444445555555555555555555544
No 338
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.13 E-value=4.2 Score=27.55 Aligned_cols=32 Identities=25% Similarity=0.140 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
..+.-++.+.|+++.|.+..+.+++.+|++..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 34566788999999999999999999999865
No 339
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.44 E-value=1.7e+02 Score=36.96 Aligned_cols=64 Identities=6% Similarity=0.001 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 560 AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
..+|......++..|.++.|....-++.+..++ ..+.-.+..+...|+-..|+.++++-.+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 458888888899999999999988888887743 4688999999999999999999998876543
No 340
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.20 E-value=29 Score=32.16 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=63.6
Q ss_pred HHHHhcCChHHHHHHHHhC---------CCCCCHHHH-----------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 536 DLLGRAGCLDEAKTLIEAM---------PMQPDAVIW-----------GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~-----------~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
+-+.+.|++.+|..-|.++ .-+|-..-| .+...++...|++-++++....++...|.+..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 3455666666666655543 223432222 22333455778999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+|..-+.+.+..=+..+|..-+.+..+
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 999999999988899999999988874
No 341
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.01 E-value=6.2 Score=38.11 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=29.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHH
Q 005265 465 VGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFS 516 (705)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 516 (705)
+-|.+.|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..=..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 456666677777776666555 455 55666666666666555555444333
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.89 E-value=97 Score=33.72 Aligned_cols=246 Identities=12% Similarity=0.022 Sum_probs=126.0
Q ss_pred HcCChHHHHHHHHHhhh-------CCCCcchhhHHHHHHHHhhcc-----cHHHHHHHHHHHHHhCCCCCCCCCCcHhHH
Q 005265 362 QNGENEEALGLFRLLKR-------ESVCPTHYTFGNLLNACANLA-----DLQLGRQAHTHVVKHGLRFLSGEESDIFVG 429 (705)
Q Consensus 362 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (705)
...+++.|+.+|+.+.+ .| .......+-.+|.+.. +.+.|..++....+.|. |+....
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-------~~a~~~ 330 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-------PDAQYL 330 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-------chHHHH
Confidence 44566666666666655 33 2223334444444422 55667777777777664 444333
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHccCCC-ChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 005265 430 NSLIDMYMK-CGSVEDGCRIFETMVER-DWVSWNAMIVGCAQ----NGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACS 503 (705)
Q Consensus 430 ~~li~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 503 (705)
-..+..... ..+...|.++|...... .+.+.-.+..+|.. ..+...|..++++..+.| .|...--...+..+.
T Consensus 331 lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g 409 (552)
T KOG1550|consen 331 LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYG 409 (552)
T ss_pred HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHc
Confidence 222222222 23566777777766543 33333333333322 236677788888777776 333322223333333
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH---Hh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 005265 504 HAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLL---GR----AGCLDEAKTLIEAMPMQPDAVIWGSLLAACKV---- 572 (705)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~---- 572 (705)
. +.++.+.-.+..+. ..+.+-....-..+.+.. .. ..+.+.+..++.+...+-+......+...|..
T Consensus 410 ~-~~~~~~~~~~~~~a-~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~ 487 (552)
T KOG1550|consen 410 V-GRYDTALALYLYLA-ELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGT 487 (552)
T ss_pred c-ccccHHHHHHHHHH-HhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCC
Confidence 3 55555554444442 223221111111111111 11 22455666666666444555555555555433
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-C--ChhHHHHHHHHHHhC
Q 005265 573 HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL-G--RWGEVVRVRKLMRKR 623 (705)
Q Consensus 573 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~ 623 (705)
..+++.|...+.++.+.. ......++.++..- | .+..|.+++++....
T Consensus 488 ~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 488 GRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred CCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 236777888887777665 45566777776552 1 267888888777653
No 343
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=79.72 E-value=1e+02 Score=34.01 Aligned_cols=152 Identities=15% Similarity=0.101 Sum_probs=74.2
Q ss_pred CCCCcHHHHHHHHHHHHcCCCCChh-----hHHHHHHHhhcCCChHHHHHHHhccCC----CC----cchHHHH-HHHHH
Q 005265 163 GSVDFKMGTQVHALLSKSRYSSDVY-----MGSALIDMYGKCGRVSCARRVFDGMRE----RN----IVSWNSL-ITCYE 228 (705)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~l-i~~~~ 228 (705)
...+++.|+..+++.....-.++.. ....++..|.+.+... |.+..++..+ .. ...+..+ +..+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 4555666666665543332121111 1223445555555444 6555555432 01 1122222 22233
Q ss_pred hcCChhHHHHHHHHHHHCC---CCCCHhHHHHHHHHHH--ccCChHHHHHHHHHHHHcCC--------CCCChhHHHHHH
Q 005265 229 QNGPASDALEVFVRMMASG---IEPDEVTLASVVSACA--SLAAFKEGLQIHARLMRCEK--------LRNDLVLGNALV 295 (705)
Q Consensus 229 ~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~~li 295 (705)
..+++..|++.++.....- ..|-...+..++.++. +.+..+.+.+....+..... ..|...++..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 3368888888887776532 2333344444555443 34555666666665533210 123455666666
Q ss_pred HHH--HhcCChHHHHHHHhhCC
Q 005265 296 DMY--AKCGKLNEARCVFDRMP 315 (705)
Q Consensus 296 ~~~--~~~g~~~~A~~~~~~~~ 315 (705)
+.+ ...|++..+...++++.
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 554 45677777776665553
No 344
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.84 E-value=8.3 Score=36.89 Aligned_cols=95 Identities=9% Similarity=0.078 Sum_probs=71.3
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC-C--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE-R--------DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV 493 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 493 (705)
+....+...++..-....+++.+...+-++.. + ...+|-. ++..-++++++.++..=++-|+-||.+
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir----lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR----LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH----HHHccChHHHHHHHhCcchhccccchh
Confidence 45555666677777777888888888776652 2 2223322 233456789999999889999999999
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKE 521 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (705)
++..+++.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998887776654
No 345
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.44 E-value=44 Score=35.37 Aligned_cols=132 Identities=15% Similarity=0.099 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHH
Q 005265 290 LGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEA 369 (705)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 369 (705)
..+.++..+.+.|-.++|+++--.- ..-.....+.|+++.|.++..+. .+..-|..|..+..+.|++..|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D~--------d~rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA 685 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTDP--------DQRFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLA 685 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCCh--------hhhhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhH
Confidence 3445555555666666655332110 01112233455666555555432 3556788888888999999988
Q ss_pred HHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 005265 370 LGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIF 449 (705)
Q Consensus 370 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 449 (705)
.+.|..... |..|+-.+...|+-+....+-....+.|. . |...-+|...|+++++.+++
T Consensus 686 ~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-------~-----N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 686 SECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-------N-----NLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred HHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-------c-----chHHHHHHHcCCHHHHHHHH
Confidence 888877654 44566666677776666666666666654 2 22334556667777777766
Q ss_pred Hcc
Q 005265 450 ETM 452 (705)
Q Consensus 450 ~~~ 452 (705)
.+-
T Consensus 745 i~t 747 (794)
T KOG0276|consen 745 IST 747 (794)
T ss_pred Hhc
Confidence 543
No 346
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.53 E-value=1.5 Score=42.23 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=72.1
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 005265 540 RAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVR 617 (705)
Q Consensus 540 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 617 (705)
..|.+++|++.|... +..|. ...+..-.+++.+.+....|++-+..+++++|+...-|-.-+.+..-.|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 467788888888776 44554 3344444556778888899999999999999998888888888888899999999999
Q ss_pred HHHHhCCCccCCce
Q 005265 618 KLMRKRGVVKQPGC 631 (705)
Q Consensus 618 ~~~~~~~~~~~~~~ 631 (705)
....+.+.....+.
T Consensus 206 ~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 206 ALACKLDYDEANSA 219 (377)
T ss_pred HHHHhccccHHHHH
Confidence 99988887655443
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.73 E-value=5 Score=25.89 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 598 VLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 598 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
..|+.+|...|+.+.|+++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468889999999999999999988544
No 348
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.41 E-value=10 Score=34.13 Aligned_cols=73 Identities=12% Similarity=-0.031 Sum_probs=36.3
Q ss_pred hcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC-------CChhhHHHHHHHHHhcCChh
Q 005265 30 LRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN-------KNVFTWNSIITGLLKWGFID 102 (705)
Q Consensus 30 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~ 102 (705)
.+.|+ +.|++.|-.+...+.--++.....|...|. ..+.++++.++....+ .|+..+.+|.+.+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 455555555555554455555555555554 3445555555444321 34445555555555555554
Q ss_pred HH
Q 005265 103 DA 104 (705)
Q Consensus 103 ~A 104 (705)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 44
No 349
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.20 E-value=11 Score=30.62 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=30.4
Q ss_pred hhHHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHH
Q 005265 3 TQRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARII 46 (705)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 46 (705)
+++-+..+.+-.+-|++......|++|.+-+++..|.++++-+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 55566666666666777777777777777777777777777654
No 350
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.76 E-value=17 Score=35.33 Aligned_cols=90 Identities=18% Similarity=0.117 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005265 531 YTCMVDLLGRAGCLDEAKTLIEAM-P---MQP--DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMY 604 (705)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 604 (705)
|--=.+-|.+..++..|...|.+. . -.| +.+.|+.-..+-...|++..++.-..+++.++|.+...|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333356688899999999999876 1 234 4556777777777789999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHH
Q 005265 605 AELGRWGEVVRVRKLM 620 (705)
Q Consensus 605 ~~~g~~~~A~~~~~~~ 620 (705)
....++++|....+..
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999988887776654
No 351
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.28 E-value=60 Score=28.45 Aligned_cols=121 Identities=15% Similarity=0.138 Sum_probs=74.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHH--HHHHHhcC
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKD-HYTCM--VDLLGRAG 542 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g 542 (705)
+++.+..++|+.-|..+.+.|...=.+ ............|+...|...|+++-+.. -.|... -...| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhccc
Confidence 456677788888888888766543222 22333445667888888888888875442 222211 11111 22456778
Q ss_pred ChHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005265 543 CLDEAKTLIEAMPMQ--P-DAVIWGSLLAACKVHRNIMLGEYVAKKLLE 588 (705)
Q Consensus 543 ~~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 588 (705)
-+++.....+.+..+ | ....-.+|.-+-.+.|++..|...|.++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888877777776322 2 233445566667788888888888887765
No 352
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=74.24 E-value=20 Score=33.05 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCCHHH-------HHHHHHHHHhhC--CC----CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 562 IWGSLLAACKVHRNIML-------GEYVAKKLLEIE--PS----NSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
.+.-+...|+..|+.+. |.+.|+++.+.. |. .......++.++.+.|++++|.+.+.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34444555777777544 555555555442 22 23456789999999999999999999998543
No 353
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.11 E-value=6.2 Score=21.87 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=10.6
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 005265 533 CMVDLLGRAGCLDEAKTLIE 552 (705)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~ 552 (705)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555543
No 354
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.00 E-value=63 Score=28.58 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 005265 576 IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQ 628 (705)
Q Consensus 576 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 628 (705)
+++|...|+++.+.+|++.. |..-..+. ++|-+++.++.+.+....
T Consensus 96 F~kA~~~FqkAv~~~P~ne~-Y~ksLe~~------~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNEL-YRKSLEMA------AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH-HHHHHHHH------HTHHHHHHHHHHSSS---
T ss_pred HHHHHHHHHHHHhcCCCcHH-HHHHHHHH------HhhHHHHHHHHHHHhhhh
Confidence 56788889999999999865 54444443 357888888877766544
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.72 E-value=8.3 Score=28.47 Aligned_cols=47 Identities=6% Similarity=-0.055 Sum_probs=22.6
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 005265 504 HAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTL 550 (705)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 550 (705)
.....++|+..|....+...-.|+ -.++.+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444222222 33445555555555555555443
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.62 E-value=15 Score=33.30 Aligned_cols=89 Identities=17% Similarity=0.076 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 532 TCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
+..+..+.+.+.+.+|+...+.- ..+| |...-..++..++..|++++|..-++-+-++.|++.. .+..|...
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~----~a~lyr~l-- 78 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV----GASLYRHL-- 78 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch----HHHHHHHH--
Confidence 44466778888999998877654 4455 5667788888899999999999999998888887543 22222221
Q ss_pred hhHHHHHHHHHHhCCCcc
Q 005265 610 WGEVVRVRKLMRKRGVVK 627 (705)
Q Consensus 610 ~~~A~~~~~~~~~~~~~~ 627 (705)
-.++...+....-+..|
T Consensus 79 -ir~ea~R~evfag~~~P 95 (273)
T COG4455 79 -IRCEAARNEVFAGGAVP 95 (273)
T ss_pred -HHHHHHHHHHhccCCCC
Confidence 12344555555555444
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.47 E-value=83 Score=29.67 Aligned_cols=180 Identities=13% Similarity=0.143 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccC-------CC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCh---hh
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMV-------ER--DWVSWNAMIVGCAQNGYGTEALGLFKKMLLC--GEKPDH---VT 494 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~~ 494 (705)
...++..+.+.|++++..+.+.++. .+ +..+.|+++..-....+.+-..+.|+.-++. ..+.+. .|
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 3345555666777777766666553 11 4456666666555555544444443332211 011111 23
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCC----------CChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCH
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLA----------PLKDHYTCMVDLLGRAGCLDEAKTLIEAM----PMQPDA 560 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~ 560 (705)
-.-+...+...|.+....++++++.+...-. .-...|..-|++|....+-.+-..++++. ..-|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 3445556667777777777777775442111 11346777788888888877777777765 233555
Q ss_pred HHHHHHHHH----HHhcCCHHHHHHHHHHHHhh-----CCCCCc--hHHHHHHHHHhcC
Q 005265 561 VIWGSLLAA----CKVHRNIMLGEYVAKKLLEI-----EPSNSG--PYVLLSNMYAELG 608 (705)
Q Consensus 561 ~~~~~l~~~----~~~~g~~~~a~~~~~~~~~~-----~p~~~~--~~~~l~~~~~~~g 608 (705)
.+...+-.+ ..+.|.+++|-.-|-++++. .|.... -|..|++++.+.|
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 555443222 34567788777666666654 233222 2556667766655
No 358
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.08 E-value=13 Score=28.73 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=28.6
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 580 EYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 580 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
...+++.++.+|+|...-..++..+...|++++|.+.+-.+..+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344555666677777777777777777777777777776666543
No 359
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.06 E-value=7.5 Score=22.50 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005265 574 RNIMLGEYVAKKLLEIEPSNSGPYVLLSNM 603 (705)
Q Consensus 574 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 603 (705)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999888777766553
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.04 E-value=70 Score=32.83 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=61.4
Q ss_pred HcCChHHHHH-HHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005265 469 QNGYGTEALG-LFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEA 547 (705)
Q Consensus 469 ~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 547 (705)
..|+.-.|-+ ++..+....-.|+.+-..+.+ ....|.++.+.+.+....+. +.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHH
Confidence 3455555433 333344433344444333332 45566777776666655332 233355566666666666777777
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 548 KTLIEAM-PMQ-PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 548 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
..+-+.| +.+ .++.............|-++++...+++++.++|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 6666665 111 12222222233344555666666666666666544
No 361
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.97 E-value=97 Score=35.21 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=28.5
Q ss_pred HHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhh
Q 005265 123 VSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACA 162 (705)
Q Consensus 123 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 162 (705)
+-.|......+-+..+++.+....-.++..-.+.++..|+
T Consensus 598 Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 598 VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 3445666777788888888877766667777777777665
No 362
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.37 E-value=7.7 Score=21.81 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 595 GPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
..+..++.++...|++++|...++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3578899999999999999999988764
No 363
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.40 E-value=1.4e+02 Score=32.87 Aligned_cols=176 Identities=13% Similarity=0.170 Sum_probs=98.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC-CChh----------HHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC
Q 005265 425 DIFVGNSLIDMYMKCGSVEDGCRIFETMVE-RDWV----------SWNAMIVGCAQNGYGTEALGLFKKMLLC--GEKPD 491 (705)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~ 491 (705)
...+...++-.|....+++...++.+.+.. ||.. .|.-.++---+-|+-+.|+...-.|.+. .+.||
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 345556677777778888888888776652 2211 2222233333457778888888777764 36677
Q ss_pred hhhH-----HH--HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHH------hC-CC
Q 005265 492 HVTM-----IG--VLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGC-LDEAKTLIE------AM-PM 556 (705)
Q Consensus 492 ~~~~-----~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~------~~-~~ 556 (705)
..+. .- +-+.|...+..+.|.+.|++. +.+.|....--.+.-.+..+|+ ++...++-. .+ +-
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~Wyrka---FeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~Llgr 356 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKA---FEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGR 356 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHH---hccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhc
Confidence 6532 11 122455677788888888844 5677875443333333333332 222222211 11 11
Q ss_pred CCC----HHHH--HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005265 557 QPD----AVIW--GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNM 603 (705)
Q Consensus 557 ~p~----~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 603 (705)
+-. ...| ...+.+..-.+++.+|.+..+.|.++.|+....-..+.++
T Consensus 357 KG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 357 KGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred cchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHH
Confidence 111 0111 2234555667899999999999999999875433344433
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.89 E-value=42 Score=34.36 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=83.7
Q ss_pred HHHHHhcCCHHHHHHH-HHccC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHH
Q 005265 433 IDMYMKCGSVEDGCRI-FETMV--ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVE 509 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~-~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 509 (705)
|.--...|++..|.+- |.-+. +.+++........+...|+++.+...+...... +.....+...+++..-..|+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 3334456777766543 33332 123333322333466789999999988776553 4455678889999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 005265 510 EGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAA 569 (705)
Q Consensus 510 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 569 (705)
+|...-.-|... .++ ++++.......-...|-++++...+++. .+ .|...-|-..++.
T Consensus 375 ~a~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 375 EALSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 999998877654 332 2333333333344567889998888887 22 3444455555555
No 365
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.83 E-value=60 Score=25.42 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 005265 167 FKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMAS 246 (705)
Q Consensus 167 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 246 (705)
-++|..+-+.+...+-. ...+-..-+..+...|+++.|..+.+.+.-||...|-+|-.. +.|..+.+..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34555555555444322 222222334556788999999999999988999998887654 566666666666677665
Q ss_pred CCCCCHhHH
Q 005265 247 GIEPDEVTL 255 (705)
Q Consensus 247 g~~p~~~t~ 255 (705)
| .|...+|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 5 3444444
No 366
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=66.81 E-value=1.3e+02 Score=29.42 Aligned_cols=146 Identities=12% Similarity=0.149 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc--c----CcHHHHHHHHHHhHHhcCCC--CChhHHHHHHHHHHhcCCh
Q 005265 473 GTEALGLFKKMLLCGEKPDHVTMIGVLCACSH--A----GLVEEGRKYFSSMSKEHGLA--PLKDHYTCMVDLLGRAGCL 544 (705)
Q Consensus 473 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~ 544 (705)
+++.+.+++.|.+.|++-+..+|.+....... . .....|..+++.|.+.+.+- ++..++..++.. +.++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788889999988888776654433322 2 23567888999998876553 334455555433 44443
Q ss_pred H----HHHHHHHhC---CCCC-CHHHHHH-HHHHHHhcCC--HHHHHHHHHHHHhhCCC-CCchHHHHHHHHHhcCChhH
Q 005265 545 D----EAKTLIEAM---PMQP-DAVIWGS-LLAACKVHRN--IMLGEYVAKKLLEIEPS-NSGPYVLLSNMYAELGRWGE 612 (705)
Q Consensus 545 ~----~A~~~~~~~---~~~p-~~~~~~~-l~~~~~~~g~--~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~ 612 (705)
+ ++..+|+.+ ++.+ |..-+.+ ++..+..... ..++.++++.+.+.+-. ....|..+|-+-.-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 3 333444443 3332 3333333 3333222222 33556666666554322 22224444444433444324
Q ss_pred HHHHHHHH
Q 005265 613 VVRVRKLM 620 (705)
Q Consensus 613 A~~~~~~~ 620 (705)
...-+..+
T Consensus 236 ~~~~i~ev 243 (297)
T PF13170_consen 236 IVEEIKEV 243 (297)
T ss_pred HHHHHHHH
Confidence 44444443
No 367
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=65.64 E-value=23 Score=27.50 Aligned_cols=53 Identities=6% Similarity=0.078 Sum_probs=38.8
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCC---------CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 570 CKVHRNIMLGEYVAKKLLEIEPSN---------SGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 570 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
..+.|++..|.+.+.+..+..... ..+...++.++...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456788888888777777652111 12345678889999999999999998875
No 368
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.55 E-value=65 Score=30.72 Aligned_cols=88 Identities=15% Similarity=0.056 Sum_probs=49.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH--
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLC--GEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLG-- 539 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-- 539 (705)
|++++..+++.+++.+.-+--+. .++|. ....-|-.|++.+.+..+.++-....+.. -.-+..-|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p-~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDP-SNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCc-ccCCchhhHHHHHHHHHH
Confidence 66677777777766554433321 12222 33334445677777777776666555431 1222334666665554
Q ss_pred ---hcCChHHHHHHHHhC
Q 005265 540 ---RAGCLDEAKTLIEAM 554 (705)
Q Consensus 540 ---~~g~~~~A~~~~~~~ 554 (705)
-.|.++||+++...-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 458888888877443
No 369
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=65.21 E-value=1.8e+02 Score=30.42 Aligned_cols=159 Identities=14% Similarity=0.032 Sum_probs=87.3
Q ss_pred cchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhH
Q 005265 383 PTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER---DWVS 459 (705)
Q Consensus 383 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~ 459 (705)
.|.....+++..+.......-.+.+..++...|- +...+..++++|... ..+.-..+++++.+- |++.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--------~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~ 134 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--------SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVI 134 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--------hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHH
Confidence 3555566666666666666666677777766653 555666677777666 445555666654432 3344
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH------VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTC 533 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 533 (705)
-..|..-|-+ ++.+.+...|.++... +-|-. ..|.-+... -..+.+....+...+....|...-...+.-
T Consensus 135 ~ReLa~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qd 210 (711)
T COG1747 135 GRELADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQD 210 (711)
T ss_pred HHHHHHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 4444444444 6666677777666654 22211 122222211 134555555555555555454444455555
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 005265 534 MVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~ 554 (705)
+-.-|....++.+|++++...
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred HHHHhccccCHHHHHHHHHHH
Confidence 555666666666666666654
No 370
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.02 E-value=1.1e+02 Score=27.63 Aligned_cols=88 Identities=13% Similarity=0.142 Sum_probs=54.3
Q ss_pred HHhhcccHHHHHHHHHHHHHhCCCCCCCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhH--HHHHHHHHHH
Q 005265 394 ACANLADLQLGRQAHTHVVKHGLRFLSGEES--DIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVS--WNAMIVGCAQ 469 (705)
Q Consensus 394 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~ 469 (705)
.+...++++.|...+.......- +. ...+--.|.......|.+++|+..++....++-.+ ...-...+..
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~------De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTK------DENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccch------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 34556666666666665554221 11 11222334556677788888888888777665444 3333456777
Q ss_pred cCChHHHHHHHHHHHHCC
Q 005265 470 NGYGTEALGLFKKMLLCG 487 (705)
Q Consensus 470 ~g~~~~A~~~~~~m~~~g 487 (705)
.|+-++|..-|.+.++.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 888888888888877764
No 371
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=64.59 E-value=48 Score=25.21 Aligned_cols=66 Identities=9% Similarity=-0.011 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHH
Q 005265 170 GTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDAL 237 (705)
Q Consensus 170 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 237 (705)
+.++++.+.+.|+- +......+-.+-...|+.+.|.++++.++ +....|...+.++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 34566666666543 23333333333335577888888888888 77777888888877777655443
No 372
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.33 E-value=1.2e+02 Score=30.93 Aligned_cols=54 Identities=9% Similarity=-0.060 Sum_probs=35.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHh--ccCcHHHHHHHHHHhHH
Q 005265 466 GCAQNGYGTEALGLFKKMLLCGEKPDHV--TMIGVLCACS--HAGLVEEGRKYFSSMSK 520 (705)
Q Consensus 466 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 520 (705)
.+...+++..|.++|+.+... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344678888888888888876 555444 3444444443 35667788888876654
No 373
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.30 E-value=54 Score=27.87 Aligned_cols=77 Identities=10% Similarity=0.203 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCC---------CCCcccHHHHHHHHHhCCC-hHHHHHHHHHhHhCCCCCChhhHHHH
Q 005265 88 WNSIITGLLKWGFIDDASRLFASMP---------ERDQCSWNSMVSGFAQHDR-FSEALGYFVKMHSENFALSEYSFGSA 157 (705)
Q Consensus 88 ~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l 157 (705)
.|+++.-.+..+++...+++++.+. ..+..+|++++.+.++... ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4455555455555555555554442 1245567777777765554 33466777777776777777777777
Q ss_pred HHHhhCC
Q 005265 158 LSACAGS 164 (705)
Q Consensus 158 l~~~~~~ 164 (705)
+.+|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7777654
No 374
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.93 E-value=52 Score=25.01 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHH
Q 005265 404 GRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEAL 477 (705)
Q Consensus 404 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 477 (705)
+.+++..+...|+ .+..-...+-.+-...|+.+.|.+++..+. +.+..|...+.++...|+.+-|.
T Consensus 21 ~~~v~d~ll~~~i-------lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-------LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-------CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3456666666665 233333333333335678888888888888 78888888888888887766554
No 375
>PRK12798 chemotaxis protein; Reviewed
Probab=63.68 E-value=1.8e+02 Score=29.75 Aligned_cols=181 Identities=11% Similarity=0.159 Sum_probs=120.0
Q ss_pred hcCCHHHHHHHHHccCC----CChhHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCChh----hHHHHHHHHhccCcH
Q 005265 438 KCGSVEDGCRIFETMVE----RDWVSWNAMIVGCA-QNGYGTEALGLFKKMLLCGEKPDHV----TMIGVLCACSHAGLV 508 (705)
Q Consensus 438 ~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~ 508 (705)
-.|+.++|.+.+..+.. +....+-.|+.+-. ...++..|+++|+...- .-|... ....-+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 36899999999998864 35567777777644 46689999999999876 456543 455555567889999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHH-HHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005265 509 EEGRKYFSSMSKEHGLAPLKDHYTC-MVDLLGRAG---CLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAK 584 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (705)
+++..+-..-.+++...|-...|.. +...+.+.+ ..+.-..++..|.-.--...|..+...-...|+.+.|...-+
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9988877777676655555333332 333333333 344455566666422235578888888889999999999999
Q ss_pred HHHhhCCCCCchHHHHHHHHHh-----cCChhHHHHHHHHHH
Q 005265 585 KLLEIEPSNSGPYVLLSNMYAE-----LGRWGEVVRVRKLMR 621 (705)
Q Consensus 585 ~~~~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~ 621 (705)
++..+...+ ..-...+.+|.. ..+.++|.+.+..+.
T Consensus 282 ~A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 282 RALKLADPD-SADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 999985332 223444444433 345666666665543
No 376
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.54 E-value=1.9e+02 Score=30.01 Aligned_cols=196 Identities=10% Similarity=0.007 Sum_probs=85.7
Q ss_pred HHHHcCCCCchhh--HHHHHHHHHccCChhhHHHHHhccCCCChh--hHHHHHHHHHhcCChhHHHHHHhcCCCC----C
Q 005265 44 RIIKSQFASEIFI--QNRLIDVYAKCGCLYGARKVFDKMSNKNVF--TWNSIITGLLKWGFIDDASRLFASMPER----D 115 (705)
Q Consensus 44 ~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~----~ 115 (705)
.+.+.|..++... ..+.+...+..|+.+-+.-+++.=..++.. ...+-+...++.|+.+.+..+++.-... +
T Consensus 20 ~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 99 (413)
T PHA02875 20 RLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFY 99 (413)
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCccccccc
Confidence 3444565554322 223344444556665555444432222111 1112344455667776666666543321 1
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhh--HHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChh--hHHH
Q 005265 116 QCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYS--FGSALSACAGSVDFKMGTQVHALLSKSRYSSDVY--MGSA 191 (705)
Q Consensus 116 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ 191 (705)
...+ +.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+. .+.+.|..++.. ...+
T Consensus 100 ~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~----~Ll~~g~~~~~~d~~g~T 170 (413)
T PHA02875 100 KDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE----LLIDHKACLDIEDCCGCT 170 (413)
T ss_pred CCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhcCCCCCCCCCCCCC
Confidence 1112 233333445554 34444455565554321 122333444555554433 334444433221 1122
Q ss_pred HHHHhhcCCChHHHHHHHhccCCCCcch---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 005265 192 LIDMYGKCGRVSCARRVFDGMRERNIVS---WNSLITCYEQNGPASDALEVFVRMMASGIEPDE 252 (705)
Q Consensus 192 li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 252 (705)
-+...+..|+.+-+.-+++.-..++... ..+++...+..|+.+ +.+-+.+.|..++.
T Consensus 171 pL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 171 PLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 3334455667666666665544433321 223444344555543 34444556666553
No 377
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=62.91 E-value=2e+02 Score=30.09 Aligned_cols=389 Identities=11% Similarity=0.064 Sum_probs=195.0
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHH
Q 005265 215 RNIVSWNSLITCYEQNGPASDALEVFVRMMAS-GIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNA 293 (705)
Q Consensus 215 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 293 (705)
.|+..|...+.-+-+.+.+.+.-.+|..|... +-.|+...+.+ ..-+....+++.|..++...++.. +.++..|-.
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA-~wefe~n~ni~saRalflrgLR~n--pdsp~Lw~e 179 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAA-KWEFEINLNIESARALFLRGLRFN--PDSPKLWKE 179 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhh-hhHHhhccchHHHHHHHHHHhhcC--CCChHHHHH
Confidence 48889999998888888899999999999874 33444443322 122233344899999998888853 333444444
Q ss_pred HHHHHHhc-CChHHHHHHHhhCCC-------CCcccHHHH------HHHHH------------hcCCHHHHHHHHHhc--
Q 005265 294 LVDMYAKC-GKLNEARCVFDRMPI-------RNVVSETSM------VSGYA------------KASSVKSARLMFTKM-- 345 (705)
Q Consensus 294 li~~~~~~-g~~~~A~~~~~~~~~-------~~~~~~~~l------i~~~~------------~~~~~~~A~~~~~~~-- 345 (705)
..++-..- .....=.+.+..-.. .....|+.. +.+.. ..+.+.+ .+.+.+
T Consensus 180 yfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k--~i~d~~~~ 257 (568)
T KOG2396|consen 180 YFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQK--NIIDDLQS 257 (568)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHH--HHHHHHhc
Confidence 33321110 000000000000000 000001000 00000 0011111 111112
Q ss_pred -CCCCeehHHHHHHHHH----H---------------cCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcc------
Q 005265 346 -LERNVVSWNALIAGYT----Q---------------NGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLA------ 399 (705)
Q Consensus 346 -~~~~~~~~~~li~~~~----~---------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~------ 399 (705)
-..++.+|..+..-.. + ..+.+....+|++..+ .-|+...+...|..|...-
T Consensus 258 ~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~ 335 (568)
T KOG2396|consen 258 KAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGK 335 (568)
T ss_pred cCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 1235555554433221 1 0112233456665554 2456666666777665432
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHH-HHHHHccCCCChhHHHHHHHHHHHcC-ChHH-H
Q 005265 400 DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDG-CRIFETMVERDWVSWNAMIVGCAQNG-YGTE-A 476 (705)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~-A 476 (705)
.+.....+++...+.+... +.....|..+.-++.......++ ..+..+.-..+...|-.-++...+.. +++- -
T Consensus 336 ~I~h~~~~~~~~~~~~~l~----~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f 411 (568)
T KOG2396|consen 336 RILHTMCVFRKAHELKLLS----ECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLF 411 (568)
T ss_pred HHHHHHHHHHHHHHhcccc----cchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHH
Confidence 3334445555555443211 44556777777777766654444 33333555566666766555554321 2221 1
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCc-HHHHH--HHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHH
Q 005265 477 LGLFKKMLLCGEKPDHVTMIGVLCACSHAGL-VEEGR--KYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIE 552 (705)
Q Consensus 477 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~--~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (705)
.++|......-..+-...|++.. .|+ +.... .++... .. -..|+ ...-+.+++-+.+.|-..+|...+.
T Consensus 412 ~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~-~s-~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~ 484 (568)
T KOG2396|consen 412 EELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL-LS-VIGADSVTLKSKYLDWAYESGGYKKARKVYK 484 (568)
T ss_pred HHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH-HH-hcCCceeehhHHHHHHHHHhcchHHHHHHHH
Confidence 22233333321122222333333 222 11111 122222 22 22344 3344667788888888999999988
Q ss_pred hCC-C-CCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 553 AMP-M-QPDAVIWGSLLAA--CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 553 ~~~-~-~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
+.. . +|+...+..++.. -...-+..-+..+|+.++.....++..|......-...|..+.+-.++.+..
T Consensus 485 ~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 485 SLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 872 2 3466666666655 2233457778888888887655777777777666667788877777776655
No 378
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.34 E-value=2e+02 Score=29.85 Aligned_cols=198 Identities=9% Similarity=-0.047 Sum_probs=113.2
Q ss_pred HHHHHHHhccCCCCchh--HHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchh--hHHHHHHHHHccCChhhHHHHHhcc
Q 005265 5 RSVKQIVGDLAFLDSSP--FAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIF--IQNRLIDVYAKCGCLYGARKVFDKM 80 (705)
Q Consensus 5 ~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~ 80 (705)
++++.+.+.|..|+... -.+.|..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++.-
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence 45677778888776643 345667777777764 445566677655532 1223455666889999988888764
Q ss_pred CCCC-h--hhHHHHHHHHHhcCChhHHHHHHhcCCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCCh---
Q 005265 81 SNKN-V--FTWNSIITGLLKWGFIDDASRLFASMPERDQ---CSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSE--- 151 (705)
Q Consensus 81 ~~~~-~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--- 151 (705)
...+ . ..-.+.+...+..|+.+-+..+++.-..++. ... +.+...+..|+.+-+.- +.+.|..++.
T Consensus 92 ~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~-tpLh~A~~~~~~~~v~~----Ll~~g~~~~~~d~ 166 (413)
T PHA02875 92 KFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKF-SPLHLAVMMGDIKGIEL----LIDHKACLDIEDC 166 (413)
T ss_pred CcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHH----HHhcCCCCCCCCC
Confidence 3211 1 0112334445677888777777776544432 223 34445556777654433 3444544332
Q ss_pred hhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhh---HHHHHHHhhcCCChHHHHHHHhccCCCC
Q 005265 152 YSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYM---GSALIDMYGKCGRVSCARRVFDGMRERN 216 (705)
Q Consensus 152 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~ 216 (705)
.-.+.+ ...+..|+.+ +.+.+++.|..++... ..+++...+..|+.+-+.-+++.-..++
T Consensus 167 ~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n 229 (413)
T PHA02875 167 CGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN 229 (413)
T ss_pred CCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcc
Confidence 222233 3334456554 4555677787765432 2355665667788887777776655444
No 379
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=62.03 E-value=3.2e+02 Score=32.06 Aligned_cols=107 Identities=11% Similarity=0.058 Sum_probs=64.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHH-HHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCR-IFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCA 501 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 501 (705)
.++..+-.+.+.++.+.|..+.+.. +...+..++...-...+.++...+. +++...+..+++ .|+...-...+.+
T Consensus 786 D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~a 861 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLA 861 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHH
Confidence 4667777788888888887655433 3344445566566666677776664 456666666664 4666666666777
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDL 537 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 537 (705)
+........+...+..+.++ +|..+-.....+
T Consensus 862 L~~~~~~~~a~~~L~~al~D----~d~~Vr~~A~~a 893 (897)
T PRK13800 862 LTRWPGDPAARDALTTALTD----SDADVRAYARRA 893 (897)
T ss_pred HhccCCCHHHHHHHHHHHhC----CCHHHHHHHHHH
Confidence 76654344566666655442 444444433333
No 380
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=61.94 E-value=34 Score=20.95 Aligned_cols=30 Identities=7% Similarity=-0.210 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHHhhCCC
Q 005265 563 WGSLLAACKVHRNIMLGEYV--AKKLLEIEPS 592 (705)
Q Consensus 563 ~~~l~~~~~~~g~~~~a~~~--~~~~~~~~p~ 592 (705)
|..+...+...|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 33444455566666666666 3355444443
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.38 E-value=24 Score=26.13 Aligned_cols=47 Identities=15% Similarity=0.030 Sum_probs=34.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhccCcHHHHHHHH
Q 005265 469 QNGYGTEALGLFKKMLLCGEKPDH--VTMIGVLCACSHAGLVEEGRKYF 515 (705)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~ 515 (705)
..++.++|+..|...++.-..|.. .++..++.+++..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888875433332 37888888999999988887653
No 382
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.16 E-value=1.5e+02 Score=28.05 Aligned_cols=225 Identities=16% Similarity=0.204 Sum_probs=123.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhh---CCCC--cchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKR---ESVC--PTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF 427 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 427 (705)
.-.+|..+.+.|++++.+..|++|+. ..+. -+..+.+++++..+...+.+...+.++.-.+.--.. .....--.
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdA-KNeRLWFK 146 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDA-KNERLWFK 146 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh-hcceeeee
Confidence 34567778888888888888887753 1122 234566777776666665555555443322110000 00011122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCC---------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVER---------------DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCG-EKPD 491 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 491 (705)
+-+.|...|...|.+.+-.++++++.+. -...|-.-|+.|....+-.....+|++.+.-. .-|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3345677777778777777777766321 12356666788888887777777888766532 2343
Q ss_pred hhhHHHHHHHHh-----ccCcHHHHHHHHHHhHHhcCC--CCC---hhHHHHHHHHHHhcCC----hHHHHHHHHhCCCC
Q 005265 492 HVTMIGVLCACS-----HAGLVEEGRKYFSSMSKEHGL--APL---KDHYTCMVDLLGRAGC----LDEAKTLIEAMPMQ 557 (705)
Q Consensus 492 ~~~~~~ll~~~~-----~~g~~~~a~~~~~~~~~~~~~--~p~---~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~ 557 (705)
+ ....+++-|. +.|.+++|-.-|=++.+.+.- .|. ..-|-.|.+++.++|- ..+|. -..-.
T Consensus 227 P-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNd 301 (440)
T KOG1464|consen 227 P-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKND 301 (440)
T ss_pred h-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCC
Confidence 3 3445566664 567788775433333343321 222 2235556667776662 11111 01234
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005265 558 PDAVIWGSLLAACKVHRNIMLGEYVAK 584 (705)
Q Consensus 558 p~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (705)
|.......++.+|..+ +..+-++++.
T Consensus 302 PEIlAMTnlv~aYQ~N-dI~eFE~Il~ 327 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQNN-DIIEFERILK 327 (440)
T ss_pred HHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 6677888899888654 4444444333
No 383
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.84 E-value=2.5e+02 Score=30.56 Aligned_cols=286 Identities=14% Similarity=0.022 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHHcCCCCCChhHHHHHHHH-HHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhc-
Q 005265 268 FKEGLQIHARLMRCEKLRNDLVLGNALVDM-YAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKM- 345 (705)
Q Consensus 268 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~- 345 (705)
...+.++++...+.|...+-...-.....+ +....+.+.|...|+...+. |.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~------------------------~~~~a 283 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAES------------------------FKKAA 283 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH------------------------HHHHH
Confidence 445666666666665222222222222233 44556677777666533210 1111
Q ss_pred CCCCeehHHHHHHHHHHcC-----ChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh-cccHHHHHHHHHHHHHhCCCCC
Q 005265 346 LERNVVSWNALIAGYTQNG-----ENEEALGLFRLLKRESVCPTHYTFGNLLNACAN-LADLQLGRQAHTHVVKHGLRFL 419 (705)
Q Consensus 346 ~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~ 419 (705)
....+...+-+...|.+.. +.+.|+.+|.+.-+.| .|+...+...+--... ..+...|.++|..+.+.|.
T Consensus 284 ~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--- 359 (552)
T KOG1550|consen 284 TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--- 359 (552)
T ss_pred hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---
Confidence 1123445555666666643 5567888888887776 3444443333222222 2467788999998888885
Q ss_pred CCCCCcHhHHHHHHHHHH--hcCCHHHHHHHHHccCCCCh-hHHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCCChhh
Q 005265 420 SGEESDIFVGNSLIDMYM--KCGSVEDGCRIFETMVERDW-VSWNAMIV--GCAQNGYGTEALGLFKKMLLCGEKPDHVT 494 (705)
Q Consensus 420 ~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~-~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 494 (705)
+....+.+++.... ..-+...|..++.+..+.+. .+.-.+.. .+.. +.++.+.-.+..+.+.|..--...
T Consensus 360 ----~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~ 434 (552)
T KOG1550|consen 360 ----ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSN 434 (552)
T ss_pred ----hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhH
Confidence 33333322222222 23468888888888876653 22222222 2222 677777777777766554322211
Q ss_pred HHHHHHHH---hc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc----CChHHHHHHHHhCCCCCCHHHH
Q 005265 495 MIGVLCAC---SH----AGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRA----GCLDEAKTLIEAMPMQPDAVIW 563 (705)
Q Consensus 495 ~~~ll~~~---~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~p~~~~~ 563 (705)
-..++... .. ..+.+.+...+..... .-+......|.+.|... .+.+.|...+.....++ ....
T Consensus 435 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~ 509 (552)
T KOG1550|consen 435 AAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQAL 509 (552)
T ss_pred HHHHHHhccccccccccccchhHHHHHHHHHHh----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHH
Confidence 11111111 11 2244555555554422 23455555566655433 34777777777765444 3333
Q ss_pred HHHHHHHH----hcCCHHHHHHHHHHHHhhCCC
Q 005265 564 GSLLAACK----VHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 564 ~~l~~~~~----~~g~~~~a~~~~~~~~~~~p~ 592 (705)
..+...+- ... +..|.+.++++.+.+..
T Consensus 510 ~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 510 FNLGYMHEHGEGIKV-LHLAKRYYDQASEEDSR 541 (552)
T ss_pred hhhhhHHhcCcCcch-hHHHHHHHHHHHhcCch
Confidence 33333221 123 67788888887776554
No 384
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.94 E-value=67 Score=30.59 Aligned_cols=87 Identities=11% Similarity=0.115 Sum_probs=43.1
Q ss_pred HHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhh-----
Q 005265 123 VSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYG----- 197 (705)
Q Consensus 123 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----- 197 (705)
|.+++..++|.+++...-+--+..-+.-+......|-.|++.+++..+.++-...+...-.-+...|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 566777777777766554443322122223333344445566666666655555554322223333555444443
Q ss_pred cCCChHHHHHHH
Q 005265 198 KCGRVSCARRVF 209 (705)
Q Consensus 198 ~~g~~~~A~~~~ 209 (705)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 235555555554
No 385
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.89 E-value=38 Score=35.62 Aligned_cols=100 Identities=17% Similarity=0.091 Sum_probs=68.3
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHH
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPL--KDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIML 578 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 578 (705)
...|+...|...+.... ...|. ......|.+.+.+.|..-+|-.++.+. .+ ...+.++..+..++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 44677888887776543 34443 233455667777777777777776654 22 2345677777888888888889
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 579 GEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 579 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
|++.++++++++|+++..-..|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999888888876655554433
No 386
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=59.05 E-value=3.5e+02 Score=31.67 Aligned_cols=50 Identities=12% Similarity=0.001 Sum_probs=23.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005265 526 PLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRN 575 (705)
Q Consensus 526 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 575 (705)
++...-.+.+.++.+.|..+.+...+..+-..+|..+-...+.++...+.
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA 836 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc
Confidence 44555555556666665544433323222223454444445555554443
No 387
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.00 E-value=1.7e+02 Score=28.04 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=46.3
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCAC 502 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 502 (705)
..++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++ |...-..++ -|
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~y 151 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QY 151 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HH
Confidence 457788889999999999999999887665444444443333333333333322 111122222 34
Q ss_pred hccCcHHHHHHHHHHhHHh
Q 005265 503 SHAGLVEEGRKYFSSMSKE 521 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~ 521 (705)
.-.++...|...++...+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 5567788887777666543
No 388
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.37 E-value=23 Score=22.90 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=13.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 005265 463 MIVGCAQNGYGTEALGLFKKMLLC 486 (705)
Q Consensus 463 li~~~~~~g~~~~A~~~~~~m~~~ 486 (705)
+..+|...|+.+.|.+++++.+..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555666666666666665543
No 389
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=58.30 E-value=56 Score=25.35 Aligned_cols=24 Identities=4% Similarity=-0.029 Sum_probs=17.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
+.......|+.++|...+++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444466778888888888888776
No 390
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=58.06 E-value=45 Score=35.13 Aligned_cols=135 Identities=17% Similarity=0.095 Sum_probs=91.2
Q ss_pred CCCChhhHHHHHHHHhccC--cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC-CCCC--CHH
Q 005265 488 EKPDHVTMIGVLCACSHAG--LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGR-AGCLDEAKTLIEAM-PMQP--DAV 561 (705)
Q Consensus 488 ~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-~~~p--~~~ 561 (705)
--|+..+...++.-....- .-+.|-.++-.|. . .+.|--...| +...|.| .|+...|...+..+ ...| ..+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~-~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-K-PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-C-CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 3466666665555443322 2334445555553 2 3444433333 2344554 68999999988776 3344 233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
....|.....+.|....|..++.+.+.+.-..+-++..++++|....+.+.|++.++...+...
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 4556666677778888899999999999877888899999999999999999999998876543
No 391
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=57.80 E-value=1.8e+02 Score=30.93 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCCC--Chh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005265 430 NSLIDMYMKCGSVEDGCRIFETMVER--DWV---SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD 491 (705)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 491 (705)
..++.-|.+.+++++|..++..|.-. ... +.+.+.+.+.+..-.++....++.++..=..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~ 478 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPT 478 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCC
Confidence 35777899999999999999988632 222 333444444444444555555555555433343
No 392
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.90 E-value=3.1e+02 Score=30.35 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=31.9
Q ss_pred HHHcCChHHHHHHHHHhhhCCC-Ccc-----hhhHHHHHHH--HhhcccHHHHHHHHH
Q 005265 360 YTQNGENEEALGLFRLLKRESV-CPT-----HYTFGNLLNA--CANLADLQLGRQAHT 409 (705)
Q Consensus 360 ~~~~g~~~~A~~~~~~m~~~g~-~p~-----~~t~~~ll~~--~~~~~~~~~a~~~~~ 409 (705)
.+-.+++..|...+..|....- .|+ ...+...+.+ +-..|+++.|...|.
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3457889999999998875421 111 1233333333 345689999999997
No 393
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.75 E-value=1e+02 Score=24.61 Aligned_cols=79 Identities=8% Similarity=0.070 Sum_probs=39.0
Q ss_pred CCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHHHhcCChhHHHHHHhcC
Q 005265 32 SKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASM 111 (705)
Q Consensus 32 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 111 (705)
...+++|..+.+.+.+.+- ....+.-..+..+.+.|++++|...=.....||...|-+|-. .|.|-..++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456777777777766653 233333333445556677777744444444466665555432 3455555555555444
Q ss_pred CC
Q 005265 112 PE 113 (705)
Q Consensus 112 ~~ 113 (705)
..
T Consensus 96 a~ 97 (116)
T PF09477_consen 96 AS 97 (116)
T ss_dssp CT
T ss_pred Hh
Confidence 43
No 394
>PRK10941 hypothetical protein; Provisional
Probab=56.69 E-value=91 Score=30.01 Aligned_cols=66 Identities=12% Similarity=-0.022 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 005265 531 YTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 596 (705)
.+.+-.+|.+.++++.|+...+.+ .+.| |+.-+.--.-.|.+.|.+..|..-++..++..|+++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 344556778888888888888877 4445 45556656666888888888888888888888888763
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.64 E-value=1.9e+02 Score=27.77 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=48.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHH-HHHHHH
Q 005265 527 LKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVL-LSNMYA 605 (705)
Q Consensus 527 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~ 605 (705)
++.....+...|.+.|++.+|+..|-... .|+...+..++..+...| .|.....|.. .+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~---------------~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKG---------------YPSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHT---------------SS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhc---------------CCcchhHHHHHHHHHHH
Confidence 46777888889999999999988776553 233333322333333333 3333343433 334477
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005265 606 ELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~~~ 623 (705)
..|+...|...+....++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 789999999988888764
No 396
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=56.48 E-value=2.4e+02 Score=28.97 Aligned_cols=58 Identities=21% Similarity=0.365 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 005265 430 NSLIDMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCG 487 (705)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 487 (705)
..|+.-|...|++.+|...++++--| ..+.+.+++.+.-+.|+-...+.+++.....|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 45777888899999999999887765 56778888888888888777777777766654
No 397
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=55.90 E-value=60 Score=27.79 Aligned_cols=66 Identities=9% Similarity=0.121 Sum_probs=42.5
Q ss_pred hhHHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCC
Q 005265 3 TQRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGC 69 (705)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 69 (705)
...+.+.+...|+++++.=.. +|+.+...+.+-.|..+|+.+.+.+...+..|--.-++.+...|-
T Consensus 5 ~~~~~~~lk~~glr~T~qR~~-vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 5 LEDAIERLKEAGLRLTPQRLA-VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHHHcCCCcCHHHHH-HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 455666777777777666554 666666666667788888888777766654444344555555553
No 398
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=55.35 E-value=22 Score=26.94 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=18.3
Q ss_pred HhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCC
Q 005265 96 LKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDR 131 (705)
Q Consensus 96 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 131 (705)
+...+.++|.++++.++.++..+|..+..++...|.
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 333445555555555555555555555555554443
No 399
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.30 E-value=79 Score=25.97 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 005265 475 EALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMV 535 (705)
Q Consensus 475 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 535 (705)
+..+-+.......+.|+.......+++|-+.+++..|..+|+-+..+ ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34445556666678999999999999999999999999999988554 334444565554
No 400
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=52.98 E-value=70 Score=27.16 Aligned_cols=65 Identities=18% Similarity=0.117 Sum_probs=45.2
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChh
Q 005265 544 LDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWG 611 (705)
Q Consensus 544 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 611 (705)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|++..+-...+++|.+.|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 456677777775 23333344555778999999999999999999999888888888877766443
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.35 E-value=50 Score=29.93 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 005265 557 QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 557 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 591 (705)
.|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444555555555555544444
No 402
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.96 E-value=1.2e+02 Score=24.27 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLL 485 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (705)
-|..++..|..+|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777777888888888777766
No 403
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=51.17 E-value=1.6e+02 Score=25.20 Aligned_cols=82 Identities=18% Similarity=0.113 Sum_probs=64.5
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHhHhCCC-----CCChhhHHHHHHHhhCCCC-cHHHHHHHHHHHHcCCCCChhhHHH
Q 005265 118 SWNSMVSGFAQHDRFSEALGYFVKMHSENF-----ALSEYSFGSALSACAGSVD-FKMGTQVHALLSKSRYSSDVYMGSA 191 (705)
Q Consensus 118 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~ 191 (705)
..|.++.-....+++...+.+++.+..... ..+...|..++++.++... --.+..+|..+.+.+.+++...|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 467888888888899988888888744211 2466789999999977666 4466788999999888999999999
Q ss_pred HHHHhhcC
Q 005265 192 LIDMYGKC 199 (705)
Q Consensus 192 li~~~~~~ 199 (705)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 99887664
No 404
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.17 E-value=44 Score=22.06 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=30.4
Q ss_pred HHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005265 26 LDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDV 63 (705)
Q Consensus 26 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 63 (705)
|-...+.|-..++..+++.|.+.|+..+...+..+++.
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34445678888999999999999999998888877653
No 405
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=51.01 E-value=3e+02 Score=28.49 Aligned_cols=120 Identities=12% Similarity=0.049 Sum_probs=54.7
Q ss_pred ChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 005265 185 DVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACAS 264 (705)
Q Consensus 185 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 264 (705)
+..+-..-+.+++..++.+..-.+-.-....|...-..-+.+....|. ..|...+...... |+......+......
T Consensus 160 d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal 235 (410)
T TIGR02270 160 DALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAV 235 (410)
T ss_pred CHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHh
Confidence 444444445555554443333333333334555555555556666665 4555554442221 222222222222222
Q ss_pred cCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 005265 265 LAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMP 315 (705)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 315 (705)
. ..+.+...+..+.+.. . +....+.++.+.|+...+--+.+.+.
T Consensus 236 ~-~~~~a~~~L~~ll~d~----~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 236 A-GGPDAQAWLRELLQAA----A--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred C-CchhHHHHHHHHhcCh----h--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 2 2224444444444432 1 44455666666666666555555554
No 406
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.82 E-value=1.2e+02 Score=25.14 Aligned_cols=42 Identities=12% Similarity=0.036 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhh--CCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 005265 578 LGEYVAKKLLEI--EPSNSGPYVLLSNMYAELGRWGEVVRVRKL 619 (705)
Q Consensus 578 ~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 619 (705)
.+.++|+.+... .-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 788888888765 455666788999999999999999999875
No 407
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.76 E-value=1.3e+02 Score=23.96 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHH
Q 005265 400 DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGL 479 (705)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 479 (705)
..++|..+.+.+...+- ....+--.-+..+...|++++|+..=.....||...|-+|-. .+.|-.+++...
T Consensus 21 cH~EA~tIa~wL~~~~~-------~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-------MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-------THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 34555555555555432 222222233445566777777754444455667777765533 356666666666
Q ss_pred HHHHHHC
Q 005265 480 FKKMLLC 486 (705)
Q Consensus 480 ~~~m~~~ 486 (705)
+.++-..
T Consensus 92 l~rla~~ 98 (116)
T PF09477_consen 92 LTRLASS 98 (116)
T ss_dssp HHHHCT-
T ss_pred HHHHHhC
Confidence 6655544
No 408
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.47 E-value=2.3e+02 Score=26.68 Aligned_cols=162 Identities=12% Similarity=0.076 Sum_probs=78.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 005265 463 MIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACS-HAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRA 541 (705)
Q Consensus 463 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 541 (705)
++...-+.|+++++.+.++++...+...+..--+.+-.+|- ..|....+.+++..+.....-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 45566677888888888888888765555554444444442 234444455555544332211111 2222222222211
Q ss_pred ------CChHHHHHHHHhC--C--CCCCHHHHHHHHHH-HH----h--cC-----CHHHHHHHHHHHHhh-----CCCCC
Q 005265 542 ------GCLDEAKTLIEAM--P--MQPDAVIWGSLLAA-CK----V--HR-----NIMLGEYVAKKLLEI-----EPSNS 594 (705)
Q Consensus 542 ------g~~~~A~~~~~~~--~--~~p~~~~~~~l~~~-~~----~--~g-----~~~~a~~~~~~~~~~-----~p~~~ 594 (705)
.-..+.+.+++.. + ..+....+..-+.| |. . .| -.+.|.+.|+++.++ .|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1123444555543 1 11222222222222 11 1 11 236788888888754 56665
Q ss_pred chHH---HHHHH-HHhcCChhHHHHHHHHHHhCCC
Q 005265 595 GPYV---LLSNM-YAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 595 ~~~~---~l~~~-~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
.... +.+.. |--.|+.++|.++-++..+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4322 22222 4568999999999998876543
No 409
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=48.09 E-value=1.3e+02 Score=23.23 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CchHHHHHHHHHhcCChh-HHHHHHHHH
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN--SGPYVLLSNMYAELGRWG-EVVRVRKLM 620 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~A~~~~~~~ 620 (705)
|......+...+...|+++.|.+.+-.+++.+|+. ...-..|+.++.-.|.-+ .+.+..++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45666677777888888888888888888776543 455667777777777644 455555544
No 410
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=48.02 E-value=2.8e+02 Score=27.20 Aligned_cols=94 Identities=13% Similarity=0.164 Sum_probs=44.5
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCC-HHHHHH-HHHHHH------
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM---PMQPD-AVIWGS-LLAACK------ 571 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~-~~~~~~-l~~~~~------ 571 (705)
.+.|+..+|.+.|+++.++..+..-......|+.++....-+.+...++-+. ..+.+ ..+|.+ |+.+-.
T Consensus 286 RklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~kFs 365 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFS 365 (556)
T ss_pred HHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcC
Confidence 3566666666666666554322111223334555555555444444444333 21111 222322 222211
Q ss_pred -----hcCC---HHHHHHHHHHHHhhCCCCCch
Q 005265 572 -----VHRN---IMLGEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 572 -----~~g~---~~~a~~~~~~~~~~~p~~~~~ 596 (705)
+.|- -..|.+...++++.+|.-+..
T Consensus 366 pd~asrRGLS~AE~~AvEAihRAvEFNPHVPkY 398 (556)
T KOG3807|consen 366 PETASRRGLSTAEINAVEAIHRAVEFNPHVPKY 398 (556)
T ss_pred chhhhhccccHHHHHHHHHHHHHhhcCCCCcHH
Confidence 1111 124677778888888887664
No 411
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.58 E-value=3.5e+02 Score=28.17 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhHh---CCC-CCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHH
Q 005265 132 FSEALGYFVKMHS---ENF-ALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARR 207 (705)
Q Consensus 132 ~~~a~~~~~~m~~---~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 207 (705)
.++...++..... .|+ ..+......++..+ .|+...+..+++.+...+...+. +....
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~ 214 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEE 214 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHH
Confidence 3455555555432 233 44555555555543 67787777777766544211111 11222
Q ss_pred HHhcc---CCCCcchHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 005265 208 VFDGM---RERNIVSWNSLITCYEQ---NGPASDALEVFVRMMASGIEPDEVTLASVVSA 261 (705)
Q Consensus 208 ~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 261 (705)
++... ..++...+..+++++.+ .++.+.|+..+.+|.+.|..|....-..+..+
T Consensus 215 ~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 215 ALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22211 11223344555555555 47899999999999998877765444333333
No 412
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.06 E-value=1.3e+02 Score=26.83 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=10.3
Q ss_pred HHHHHccCChhhHHHHHhcc
Q 005265 61 IDVYAKCGCLYGARKVFDKM 80 (705)
Q Consensus 61 l~~~~~~g~~~~A~~~~~~~ 80 (705)
+-.|.+.|.+++|.+++++.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHHHhcCchHHHHHHHHHH
Confidence 33445555555555555554
No 413
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.69 E-value=83 Score=28.48 Aligned_cols=52 Identities=15% Similarity=0.036 Sum_probs=36.3
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
....+.+......+.+.+.....|++.+|..++.++...|+.++|.+...++
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555555555555555444456788888888888888888888888887777
No 414
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.52 E-value=1.2e+02 Score=24.29 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=25.4
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhh
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKR 378 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 378 (705)
.-|..++.-|...|.+++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4688899999999999999999999877
No 415
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=46.50 E-value=36 Score=31.24 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=35.8
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 538 LGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
..+.|+.+.|.+++.+. ...| ....|-.+....-+.|+++.|.+.|++.++++|++.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34556666666666665 3334 344666666666677777777777777777766654
No 416
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.22 E-value=2.8e+02 Score=26.78 Aligned_cols=113 Identities=13% Similarity=0.187 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCC------CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhh---CCC----CCch
Q 005265 532 TCMVDLLGRAGCLDEAKTLIEAMPMQP------DAVIWGS--LLAACKVHRNIMLGEYVAKKLLEI---EPS----NSGP 596 (705)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~~~~~p------~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~---~p~----~~~~ 596 (705)
.-|...+..+|+.++|.+++...+++. +...-.. -+..|...+|+-.|--..+++.+. +|+ ....
T Consensus 135 ~~L~~ikee~Gdi~sA~Dilcn~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlky 214 (439)
T COG5071 135 QLLSQIKEEQGDIKSAQDILCNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKY 214 (439)
T ss_pred HHHHHHHHHhcchhHHHHHHhcCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 456778899999999999998875331 2222111 244578899999999988888875 333 2234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEe
Q 005265 597 YVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFM 644 (705)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (705)
|..+..+......|-++.++++..-.....+.....|-.+...+..|.
T Consensus 215 YeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Akwk~VLS~~v~F~ 262 (439)
T COG5071 215 YELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEVLSNVVCFA 262 (439)
T ss_pred HHHhheeecccHHHHHHHHHHHHHHHHHHhccCcccccchhhcceeeE
Confidence 677777777777888888777777655444444556766655554554
No 417
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=46.07 E-value=76 Score=30.20 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 565 SLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+-+++.+.++++.|....++.+.++|.++.....-+-+|.+.|.+.-|.+-++...+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3444588889999999999999999999998889999999999999999998887554
No 418
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.99 E-value=1.6e+02 Score=24.42 Aligned_cols=42 Identities=12% Similarity=0.279 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHcCCCCc-hhhHHHHHHHHHccCChhhHHHHHh
Q 005265 37 DTRRVHARIIKSQFASE-IFIQNRLIDVYAKCGCLYGARKVFD 78 (705)
Q Consensus 37 ~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~ 78 (705)
.+..+|..|..+|+... +..|......+...|++.+|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56666666666553333 3445555566666666666666654
No 419
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.83 E-value=3.4e+02 Score=27.63 Aligned_cols=59 Identities=22% Similarity=0.212 Sum_probs=42.9
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHhccCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005265 187 YMGSALIDMYGKCGRVSCARRVFDGMRE------RNIVSWNSLITCYEQNGPASDALEVFVRMMA 245 (705)
Q Consensus 187 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 245 (705)
..+.-+.+.|..+|+++.|.+.+-+.++ .-+..|-.+|..-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3566778888999999999999988653 2234566677777777888777777666655
No 420
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=45.37 E-value=41 Score=30.92 Aligned_cols=56 Identities=9% Similarity=0.093 Sum_probs=50.9
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 570 CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 570 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
..+.++.+.+-+++.+++++-|.....|..++....+.|+++.|.+.+++..+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 45678999999999999999999999999999999999999999999999987543
No 421
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=45.17 E-value=3e+02 Score=26.69 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
+.....|...|.+.+|.++.++.+. +.| +...+..++..++..|+--.+.+.++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444566677777777777777666 333 3445566666666666655555444443
No 422
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.89 E-value=26 Score=29.03 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=25.4
Q ss_pred HHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHh
Q 005265 126 FAQHDRFSEALGYFVKMHSENFALSEYSFGSALSAC 161 (705)
Q Consensus 126 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 161 (705)
..+.|.-.+|..+|++|++.|-+|| .|+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3445667788999999999998887 466666554
No 423
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=44.23 E-value=4.6e+02 Score=28.68 Aligned_cols=57 Identities=14% Similarity=0.289 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHccCChhhHHHHHhccCC------CChhhHHHHHHHHHhcCChhHHHHHHhcCCC
Q 005265 55 FIQNRLIDVYAKCGCLYGARKVFDKMSN------KNVFTWNSIITGLLKWGFIDDASRLFASMPE 113 (705)
Q Consensus 55 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 113 (705)
.+...|+.-..+. +.....+..+++.. .++.-|+ .+..+.-.|.++.|.++++....
T Consensus 114 ~v~~~Ll~WvNr~-~~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~s~ 176 (566)
T PF07575_consen 114 PVPEQLLDWVNRF-HFPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRLHSS 176 (566)
T ss_dssp HHHHHHHHHHHTT-S--SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-TTTT
T ss_pred chHHHHHHHHHHh-CCCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHhccc
Confidence 3455566655333 33334444444332 2367787 67778888999999999966553
No 424
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=44.10 E-value=3e+02 Score=26.46 Aligned_cols=154 Identities=15% Similarity=0.127 Sum_probs=84.9
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCcchhh-------HHHHHHHHhhcccHHHHHHHHHHH----HHhCCCCCCCCCC
Q 005265 356 LIAGYTQNGENEEALGLFRLLKRESVCPTHYT-------FGNLLNACANLADLQLGRQAHTHV----VKHGLRFLSGEES 424 (705)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~ 424 (705)
+..-..+.+++++|+..|.+....|+..|..+ ...+...|...|+...-.+..... ....- +.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk------~k 82 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK------PK 82 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc------hh
Confidence 34455677889999999999999888777654 445566666666654443333222 22221 34
Q ss_pred cHhHHHHHHHHHHhc-CCHHHHHHHHHccCC----CC-----hhHHHHHHHHHHHcCChHHHHHHHHH----HHHCCCCC
Q 005265 425 DIFVGNSLIDMYMKC-GSVEDGCRIFETMVE----RD-----WVSWNAMIVGCAQNGYGTEALGLFKK----MLLCGEKP 490 (705)
Q Consensus 425 ~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p 490 (705)
...+..+|++.+-.. ..++.-+.+.....+ .+ ...-..+|..+.+.|.+.+|+.+... +.+..-+|
T Consensus 83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~ 162 (421)
T COG5159 83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKI 162 (421)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcc
Confidence 556667777766543 345555555544331 11 11234467777788888888766544 33334455
Q ss_pred ChhhHHHHH-HHHhccCcHHHHHHHH
Q 005265 491 DHVTMIGVL-CACSHAGLVEEGRKYF 515 (705)
Q Consensus 491 ~~~~~~~ll-~~~~~~g~~~~a~~~~ 515 (705)
+..+...+- .+|-...++.++..-+
T Consensus 163 ~Li~vhllESKvyh~irnv~KskaSL 188 (421)
T COG5159 163 NLITVHLLESKVYHEIRNVSKSKASL 188 (421)
T ss_pred ceeehhhhhHHHHHHHHhhhhhhhHH
Confidence 554433222 1333334444444333
No 425
>PRK09169 hypothetical protein; Validated
Probab=42.80 E-value=8.6e+02 Score=31.39 Aligned_cols=535 Identities=12% Similarity=0.068 Sum_probs=298.5
Q ss_pred CCCchhHHHHHHHHhcCCChhhHHHHHHHHHHc-------CCCCchhhHHHHHHHHHccCChhhHHHHHhccC-------
Q 005265 16 FLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKS-------QFASEIFIQNRLIDVYAKCGCLYGARKVFDKMS------- 81 (705)
Q Consensus 16 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~------- 81 (705)
.++.+....+|+++++--+.+.+.+.-+.+... ....+..-....+++++|-.+-+.+...-+.+-
T Consensus 243 ~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~ 322 (2316)
T PRK09169 243 SLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQER 322 (2316)
T ss_pred hcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCh
Confidence 477888999999999876665555544433221 123555666778888888766554443332221
Q ss_pred ----CCChhhHHHHHHHHHhcCChhHHHH----HHhcCC-------CCCcccHHHHHHHHHhCCChHH----HHHHHHHh
Q 005265 82 ----NKNVFTWNSIITGLLKWGFIDDASR----LFASMP-------ERDQCSWNSMVSGFAQHDRFSE----ALGYFVKM 142 (705)
Q Consensus 82 ----~~~~~~~~~li~~~~~~g~~~~A~~----~~~~~~-------~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m 142 (705)
.-+..-....+++++|..+-+.... +-+.+. .-|..-....+.+++|-++-+. +..+...+
T Consensus 323 ~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL 402 (2316)
T PRK09169 323 GLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARL 402 (2316)
T ss_pred hhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 1355566777889999887665332 222221 1256667778888988776442 33344444
Q ss_pred HhC-C--CCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHH---cC----CCCChhhHHHHHHHhhcCCChHH----HHHH
Q 005265 143 HSE-N--FALSEYSFGSALSACAGSVDFKMGTQVHALLSK---SR----YSSDVYMGSALIDMYGKCGRVSC----ARRV 208 (705)
Q Consensus 143 ~~~-g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~g----~~~~~~~~~~li~~~~~~g~~~~----A~~~ 208 (705)
... + ...|..-....+.+|++-++-+.+......+.. .. -..+..-....+++++|.++.+. +..+
T Consensus 403 ~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~L 482 (2316)
T PRK09169 403 ARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEAL 482 (2316)
T ss_pred HhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 332 1 235777788899999988776644433332211 10 12345556677888888876542 2333
Q ss_pred HhccCC-------CCcchHHHHHHHHHhcCChhHHHHH----HHHHHHC---CCCCCHhHHHHHHHHHHccCChHHH---
Q 005265 209 FDGMRE-------RNIVSWNSLITCYEQNGPASDALEV----FVRMMAS---GIEPDEVTLASVVSACASLAAFKEG--- 271 (705)
Q Consensus 209 ~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~---g~~p~~~t~~~ll~~~~~~~~~~~a--- 271 (705)
...+.. -+..-....+.++++-++.+.+... ..++... --.-|..-+...+.++++..+.+.+
T Consensus 483 A~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~A 562 (2316)
T PRK09169 483 AARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAA 562 (2316)
T ss_pred HHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHH
Confidence 333321 2344566788888888876654332 2222221 1234666788889999987764332
Q ss_pred -HHHHHHHHHcCC--CCCChhHHHHHHHHHHhcCChHH----HHHHHhhCC-------CCCcccHHHHHHHHHhcCCHHH
Q 005265 272 -LQIHARLMRCEK--LRNDLVLGNALVDMYAKCGKLNE----ARCVFDRMP-------IRNVVSETSMVSGYAKASSVKS 337 (705)
Q Consensus 272 -~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~ 337 (705)
..+...+.+..+ -..+..-....+++++|.++... +..+...+. .-|...+...+.+++|-.+.+.
T Consensus 563 A~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~ 642 (2316)
T PRK09169 563 AEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDD 642 (2316)
T ss_pred HHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchh
Confidence 233333332211 23455667788899999876543 233333332 1255667788889998887765
Q ss_pred HHHHHHhc-----------CCCCeehHHHHHHHHHHcCChHHHHHHHHHh----hhCC---CCcchhhHHHHHHHHhhcc
Q 005265 338 ARLMFTKM-----------LERNVVSWNALIAGYTQNGENEEALGLFRLL----KRES---VCPTHYTFGNLLNACANLA 399 (705)
Q Consensus 338 A~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g---~~p~~~t~~~ll~~~~~~~ 399 (705)
+......+ ..-+..-+..++.++++-.+...+......+ ...+ -.-|......+++++++-.
T Consensus 643 cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp 722 (2316)
T PRK09169 643 CRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWP 722 (2316)
T ss_pred HHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhcc
Confidence 54433333 1125556677788888887765433333222 2111 1335666778888888765
Q ss_pred cHHHHHH----HHHHHHHh-CCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC-------C----ChhHHHHH
Q 005265 400 DLQLGRQ----AHTHVVKH-GLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE-------R----DWVSWNAM 463 (705)
Q Consensus 400 ~~~~a~~----~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 463 (705)
+-+.++. +...+... +. ....+..-....++++.|.-+-..+...+-.+.. | +......+
T Consensus 723 ~~~acr~A~~~LA~rL~~~~~l----~~a~~aQ~lAnsLNaLsKwp~~~~c~~a~~~La~~lg~~~~p~~~f~~~~laq~ 798 (2316)
T PRK09169 723 EEEACRAAAEALAGRLAADADL----RQAMNPQGLANSLNALSKWPQEPACQQAALLLAERLGSAGLPFRTFTMAGLAQL 798 (2316)
T ss_pred CccHHHHHHHHHHHHHhcChHH----HhhcCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCchhhcCHHHHHHH
Confidence 5433333 22322220 00 0034566667778888887776666665554421 1 33334444
Q ss_pred HHHHHHc-------C---ChHHHHHHHHHHHH-CCCCCCh------hhHHHHHHHHhccCcHHHH-------HHHHHHhH
Q 005265 464 IVGCAQN-------G---YGTEALGLFKKMLL-CGEKPDH------VTMIGVLCACSHAGLVEEG-------RKYFSSMS 519 (705)
Q Consensus 464 i~~~~~~-------g---~~~~A~~~~~~m~~-~g~~p~~------~~~~~ll~~~~~~g~~~~a-------~~~~~~~~ 519 (705)
.+++++. + ....+...+++|-. .++.|+. .....++.++++.+..+.. ++-+..+.
T Consensus 799 aNa~aR~~~~~~~~~~~~~~~~~~~~L~~LA~hL~~~~~~~~~a~~~~i~~ifKalas~~l~d~lr~La~~gL~Rl~~L~ 878 (2316)
T PRK09169 799 ANAMARLILKLEDQDDEEDLALARARLRELAAHLDLRPERLEQADARDIAVLFKALASARLKDGLRLLARPGLNRLATLH 878 (2316)
T ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHHHhccCchhhhhccchhHHHHHHHHHhccchhhhhhhhHHHHHHHHHHh
Confidence 4444432 1 11223444555443 2455543 3467778888887766543 33345555
Q ss_pred HhcCCCCC-hhHHHHHHHHH---HhcCChHH----HHHHHHhC
Q 005265 520 KEHGLAPL-KDHYTCMVDLL---GRAGCLDE----AKTLIEAM 554 (705)
Q Consensus 520 ~~~~~~p~-~~~~~~l~~~~---~~~g~~~~----A~~~~~~~ 554 (705)
...++.++ .++...|--++ .++-++.. |+.+|+.+
T Consensus 879 ~~t~~r~~~LEt~g~L~~gLLPlaRspeL~~~r~~aLr~l~~~ 921 (2316)
T PRK09169 879 RATGFREDNLETLGNLCAGLLPLARSPELKAHRADALRLLERL 921 (2316)
T ss_pred hccCCCCCcHhHHHHHHhhhcccccChhhHHhHHHHHHHHhhh
Confidence 55577666 56666555443 24444443 77888766
No 426
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=41.73 E-value=43 Score=25.83 Aligned_cols=30 Identities=10% Similarity=0.294 Sum_probs=15.2
Q ss_pred CChhHHHHHHhcCCCCCcccHHHHHHHHHh
Q 005265 99 GFIDDASRLFASMPERDQCSWNSMVSGFAQ 128 (705)
Q Consensus 99 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 128 (705)
-+.+++.++++.++.++..+|..+..++..
T Consensus 48 t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 48 TSFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred CcHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 344555555555555555555555555543
No 427
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=41.26 E-value=4.3e+02 Score=27.43 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=9.3
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 005265 224 ITCYEQNGPASDALEVFVRMM 244 (705)
Q Consensus 224 i~~~~~~g~~~~A~~~~~~m~ 244 (705)
|.++...| ..+.+.+....
T Consensus 45 LdgL~~~G--~~a~~~L~~aL 63 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSAL 63 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHH
Confidence 45555555 34455444444
No 428
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=41.19 E-value=4e+02 Score=27.07 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=28.3
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHH-hcCChHHHHHHHHhC
Q 005265 500 CACSHAGLVEEGRKYFSSMSKEHGLAPL--KDHYTCMVDLLG-RAGCLDEAKTLIEAM 554 (705)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 554 (705)
..+.+.|-+..|.++.+-+. .+.|+ +.....+|+.|+ ++++++--+++++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 35566666666666666554 33443 333334455443 566666666665554
No 429
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=41.13 E-value=2.9e+02 Score=25.49 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=72.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHH
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCM 534 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 534 (705)
.+..++.+.+.+...+++...++-++ -+|.. -+-..++..++-.|++++|..-++-.- .+.|+ ...|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 34456677788888888888887777 45654 456667788889999999987777553 23343 4455555
Q ss_pred HHHHHhcCChHHHH-HHHHhC--C---CCCCHHHHHH-HHHH--HHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 535 VDLLGRAGCLDEAK-TLIEAM--P---MQPDAVIWGS-LLAA--CKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 535 ~~~~~~~g~~~~A~-~~~~~~--~---~~p~~~~~~~-l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
|.+ +.+. ++|..- + ..|.+ .|-. |+.+ |..-|.-+....+-+.+++.-|..++
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~p-~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPSP-EWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCCH-HHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 432 2222 233322 1 11333 3433 3444 22334555566777777777666544
No 430
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=40.60 E-value=5.5e+02 Score=28.47 Aligned_cols=51 Identities=24% Similarity=0.191 Sum_probs=37.0
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCC
Q 005265 115 DQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVD 166 (705)
Q Consensus 115 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 166 (705)
|...-..+|-.+.+.|++++|.++....... .......|...+..+....+
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~ 160 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPD 160 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTS
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCC
Confidence 5556667888999999999999999666543 45566778888888876533
No 431
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.41 E-value=3.2e+02 Score=25.68 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=66.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCh
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDHVT-MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCL 544 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 544 (705)
|....+++.|+..|.+.+. +.|+..+ |+.=+-.+.+..+++.+..=-.... .+.|+ +....-+...+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 4445577888888877777 7787754 4444555566777777665555443 45666 44444556666777777
Q ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005265 545 DEAKTLIEAM-------PMQPDAVIWGSLLAACKVHRNIMLGEYVA 583 (705)
Q Consensus 545 ~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (705)
++|+..+.+. +..|-...+..|..+-...=...+..++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~ 140 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIR 140 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHH
Confidence 7777777665 34445556666665533333333344433
No 432
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=40.35 E-value=94 Score=29.95 Aligned_cols=58 Identities=28% Similarity=0.345 Sum_probs=29.7
Q ss_pred HhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 005265 539 GRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 539 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 596 (705)
.+.|+.++|..+|+.. .+.|+ +.....+....-.++++-+|-..|-+++.++|.+..+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 3556666666666554 33332 2233333333334455566666666666666665543
No 433
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.32 E-value=33 Score=28.47 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=25.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005265 468 AQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCAC 502 (705)
Q Consensus 468 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 502 (705)
...|.-.+|..+|.+|++.|-.||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677899999999999999986 55565543
No 434
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=40.10 E-value=5.4e+02 Score=28.23 Aligned_cols=29 Identities=7% Similarity=-0.132 Sum_probs=14.6
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHhHhC
Q 005265 117 CSWNSMVSGFAQHDRFSEALGYFVKMHSE 145 (705)
Q Consensus 117 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 145 (705)
..|..++.++...|......-+.+.+...
T Consensus 341 ~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 341 KARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 45555555555555554444444444443
No 435
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.64 E-value=2.9e+02 Score=24.91 Aligned_cols=159 Identities=11% Similarity=0.139 Sum_probs=0.0
Q ss_pred hCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHc--------CCCCChhhHHHHHHHhhcCCChHH-----------
Q 005265 144 SENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKS--------RYSSDVYMGSALIDMYGKCGRVSC----------- 204 (705)
Q Consensus 144 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~----------- 204 (705)
+.|..++...++.++..+.+..-...-....-.++.+ +...+......=+..|-+.||+.+
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred --------------HHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHH
Q 005265 205 --------------ARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKE 270 (705)
Q Consensus 205 --------------A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 270 (705)
|..+..+.+++-.+.|.....+-++.-+.+++-+.+---.. .+++..|-+..++.+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiG----------iS~m~~Yhk~~qW~K 150 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIG----------ISLMYSYHKTLQWSK 150 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHH----------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHcCCCCCChh--------------HHHHHHHHHHhcCChHHHHHHHhh
Q 005265 271 GLQIHARLMRCEKLRNDLV--------------LGNALVDMYAKCGKLNEARCVFDR 313 (705)
Q Consensus 271 a~~~~~~~~~~~~~~~~~~--------------~~~~li~~~~~~g~~~~A~~~~~~ 313 (705)
++++++.+.+.. +.-+.. +.|.....+.++|.+|.|..++++
T Consensus 151 GrkvLd~l~el~-i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 151 GRKVLDKLHELQ-IHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHh-hhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 436
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.43 E-value=1.1e+02 Score=20.14 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=22.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 005265 227 YEQNGPASDALEVFVRMMASGIEPDEVTLASVVS 260 (705)
Q Consensus 227 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 260 (705)
..+.|-..++...+++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666677777777777777666666655543
No 437
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=39.18 E-value=4.4e+02 Score=26.92 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=49.5
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH---HHHH----HHHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAV---IWGS----LLAA 569 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~---~~~~----l~~~ 569 (705)
++...|+...-..++....+...+..| ....|+|++.|...+.++.|..+..+.. -|+.. -|.- +...
T Consensus 178 ~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~-~pe~~snne~ARY~yY~GrI 256 (493)
T KOG2581|consen 178 SYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV-YPEAASNNEWARYLYYLGRI 256 (493)
T ss_pred HHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc-CccccccHHHHHHHHHHhhH
Confidence 344455555555554444333233333 3445666777777788888888777764 12111 1111 1112
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCC
Q 005265 570 CKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 570 ~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
-..++++..|.+.+-.++...|.
T Consensus 257 kaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 257 KAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHhhcchhHHHHHHHHHHHhCcc
Confidence 34566777777777777666664
No 438
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.74 E-value=65 Score=22.68 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=11.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhH
Q 005265 496 IGVLCACSHAGLVEEGRKYFSSMS 519 (705)
Q Consensus 496 ~~ll~~~~~~g~~~~a~~~~~~~~ 519 (705)
..++.++...|++++|.++.+.+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455555555555555555443
No 439
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=37.57 E-value=1.6e+02 Score=30.36 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=37.5
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 551 IEAMPMQPD--AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 551 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
|...+++|. ..++..-+..+.+++++.-|-.+.++++++.|.... -++|.+++....
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~--------------a~qArKil~~~e 347 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV--------------AEQARKILQACE 347 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH--------------HHHHHHHHHHHC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH--------------HHHHHHHHHHHh
Confidence 444455654 346667777788999999999999999999886532 345777776554
No 440
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=37.54 E-value=4.2e+02 Score=26.21 Aligned_cols=112 Identities=17% Similarity=0.015 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHhHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005265 507 LVEEGRKYFSSMSKEHGL---APLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVA 583 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (705)
-.+.|.+.|+.......- ..++.....+.....+.|..++-..+++.....++......++.+.....+.+.-.+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 356788888887653111 34556666677777788887766666666655667888888999988888888888899
Q ss_pred HHHHhhC-CCCCchHHHHHHHHHhcCC--hhHHHHHHHH
Q 005265 584 KKLLEIE-PSNSGPYVLLSNMYAELGR--WGEVVRVRKL 619 (705)
Q Consensus 584 ~~~~~~~-p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~ 619 (705)
+.++.-+ -........+..+ ...+. .+.+.+.+..
T Consensus 225 ~~~l~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 225 DLLLSNDKVRSQDIRYVLAGL-ASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHCTSTS-TTTHHHHHHHH-H-CSTTCHHHHHHHHHH
T ss_pred HHHcCCcccccHHHHHHHHHH-hcCChhhHHHHHHHHHH
Confidence 9888742 2222334444433 32332 2555555543
No 441
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=37.47 E-value=1.8e+02 Score=22.08 Aligned_cols=63 Identities=5% Similarity=-0.067 Sum_probs=46.5
Q ss_pred CCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccC
Q 005265 17 LDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMS 81 (705)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 81 (705)
|+...|..-++.-..... ++ .++|+.....|+..|+.++..++..+.-.=-++....++..|.
T Consensus 8 ~~~~~~k~~~~rk~~Ls~-eE-~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLSA-EE-VELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred ChHHHHHHHHHHHhccCH-HH-HHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456667776765544432 22 3899999999999999999999998877667777777776664
No 442
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.23 E-value=63 Score=31.25 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHH
Q 005265 219 SWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLA 256 (705)
Q Consensus 219 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 256 (705)
-|+..|....+.||+++|+.++++..+.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 37889999999999999999999999988765444543
No 443
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.20 E-value=60 Score=31.37 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=23.2
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhH
Q 005265 118 SWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSF 154 (705)
Q Consensus 118 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 154 (705)
-||..|....+.|+.++|+.++++..+.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3566666677777777777777777766655333333
No 444
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=36.14 E-value=99 Score=23.46 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCCCeehHHHHHHHHHHcCC
Q 005265 335 VKSARLMFTKMLERNVVSWNALIAGYTQNGE 365 (705)
Q Consensus 335 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 365 (705)
.+.+.++++.++.+.+.+|..+..++...|.
T Consensus 46 ~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 46 RDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 3334444444444444444444444444443
No 445
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.56 E-value=2.8e+02 Score=27.00 Aligned_cols=77 Identities=8% Similarity=0.100 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHHHh----------cCChhHHHHHH
Q 005265 39 RRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLK----------WGFIDDASRLF 108 (705)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~A~~~~ 108 (705)
.++|+.+.+.++.|.-+.+.-+.-.+...=.+.+...+|+.+.... .-|..|+..||. .|++..-.+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-QRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-hhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 5688888899999999999888888888889999999999987521 226666666654 36666666666
Q ss_pred hcCCCCCc
Q 005265 109 ASMPERDQ 116 (705)
Q Consensus 109 ~~~~~~~~ 116 (705)
+.-+..|.
T Consensus 342 Q~yp~tdi 349 (370)
T KOG4567|consen 342 QNYPTTDI 349 (370)
T ss_pred hcCCCCCH
Confidence 65554443
No 446
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=35.05 E-value=4.4e+02 Score=25.73 Aligned_cols=199 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 005265 236 ALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMP 315 (705)
Q Consensus 236 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 315 (705)
|.++|+..... ...+.++..+.+.+.-+.-.++ +||+..+-......+...|--+-..
T Consensus 186 ~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmef---------fPpnkrs~E~Fak~Ft~agL~elve------- 243 (412)
T KOG2297|consen 186 AVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEF---------FPPNKRSVEHFAKYFTDAGLKELVE------- 243 (412)
T ss_pred HHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHh---------cCCcchhHHHHHHHHhHhhHHHHHH-------
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHH
Q 005265 316 IRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNAC 395 (705)
Q Consensus 316 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 395 (705)
|.+......|.+-++.-+...+
T Consensus 244 --------------------------------------------y~~~q~~~~a~kElq~~L~~q~-------------- 265 (412)
T KOG2297|consen 244 --------------------------------------------YHRNQQSEGARKELQKELQEQV-------------- 265 (412)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHHHHHh--------------
Q ss_pred hhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHH
Q 005265 396 ANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTE 475 (705)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 475 (705)
.+...+++......+-.+..- -|++.+...+=++......|.+-.++...-.-+....|.-|+.+++..|+.+-
T Consensus 266 s~e~p~~evi~~VKee~k~~n------lPe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNN------LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSEL 339 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcC------CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHH
Q ss_pred HH---------------HHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005265 476 AL---------------GLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSK 520 (705)
Q Consensus 476 A~---------------~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (705)
.+ +.|+++...=.+.+..+=..++.-|-.......-..+++.|.+
T Consensus 340 ~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 340 ELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQMKK 399 (412)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHH
No 447
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.21 E-value=4.4e+02 Score=25.45 Aligned_cols=159 Identities=12% Similarity=0.074 Sum_probs=86.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHhccCcHHHHHHHHHHh---HHhcCCCCChhHHHHH
Q 005265 465 VGCAQNGYGTEALGLFKKMLLCGEKPDHV-------TMIGVLCACSHAGLVEEGRKYFSSM---SKEHGLAPLKDHYTCM 534 (705)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p~~~~~~~l 534 (705)
+-..+.+++++|+..+.+++..|+..|.. +...+...|...|+...-.+..... ...+.-........+|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 34456677777777777777777665543 3445555666666654443332221 1111111224445555
Q ss_pred HHHHHhc-CChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----h--CCCCCchHHH
Q 005265 535 VDLLGRA-GCLDEAKTLIEAM----PMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLE----I--EPSNSGPYVL 599 (705)
Q Consensus 535 ~~~~~~~-g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~--~p~~~~~~~~ 599 (705)
++.+... ..++.-+++.+.. .-+.. ...-.-++..+.+.|.+..|.....-++. . .|+-...+..
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhll 170 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLL 170 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhh
Confidence 5554332 2344444444332 00000 11112356667788888888877665543 2 3555556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 005265 600 LSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
=..+|....+..++..-+...+-.
T Consensus 171 ESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 171 ESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred hHHHHHHHHhhhhhhhHHHHHHHH
Confidence 677787777877777777766644
No 448
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=34.16 E-value=1.7e+02 Score=32.04 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=20.1
Q ss_pred ChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHh
Q 005265 150 SEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFD 210 (705)
Q Consensus 150 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 210 (705)
+...-.-++..|.+.|-.+.+..+...+-..-.. ..-|..-+..+.++|+...+..+-+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444455555555555555555555544333111 1223344444555555544444433
No 449
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=34.16 E-value=7.6e+02 Score=28.22 Aligned_cols=183 Identities=14% Similarity=0.049 Sum_probs=98.3
Q ss_pred HhcCCHHHHHHHHHccCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH---HHH--HHHHh
Q 005265 437 MKCGSVEDGCRIFETMVE--------RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTM---IGV--LCACS 503 (705)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~l--l~~~~ 503 (705)
...|+++.|.++-+.... ..++.+..+..+..-.|++++|..+.++..+.--+-+...+ ..+ ...+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 346788888877665432 35667788888888899999999888776664222233322 222 22345
Q ss_pred ccCcH--HHHHHHHHHhHHhcCC-C----CChhHHHHHHHHHHh-cCChHHHHHHHHhC-CCCCCHH----HHHHHHHHH
Q 005265 504 HAGLV--EEGRKYFSSMSKEHGL-A----PLKDHYTCMVDLLGR-AGCLDEAKTLIEAM-PMQPDAV----IWGSLLAAC 570 (705)
Q Consensus 504 ~~g~~--~~a~~~~~~~~~~~~~-~----p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~ 570 (705)
..|.. .+....|......+.. . +-..++..+..++.+ .+...+|..-++-. ...|... .+..|+...
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~ 628 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELE 628 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHH
Confidence 56633 3333334333222111 1 112344445555554 12222222222222 1223222 222456667
Q ss_pred HhcCCHHHHHHHHHHHHhh--CCCCCchHHH---HHHH--HHhcCChhHHHHHHHH
Q 005265 571 KVHRNIMLGEYVAKKLLEI--EPSNSGPYVL---LSNM--YAELGRWGEVVRVRKL 619 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~---l~~~--~~~~g~~~~A~~~~~~ 619 (705)
...|+.+.|.....++..+ ++.-...|.. .+.+ ...+|+.++|...+.+
T Consensus 629 ~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 629 FLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 7899999999999998876 3321121221 2222 3457888888877765
No 450
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=34.03 E-value=80 Score=30.54 Aligned_cols=76 Identities=12% Similarity=0.072 Sum_probs=47.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 005265 526 PLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLA-ACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLS 601 (705)
Q Consensus 526 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 601 (705)
.|+..|...+.-..+.|.+.+...+|.++ ...| |+..|-.... -+..+++++.+..++.+.+.++|++|..|....
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 34555555444444455555555555555 3344 4555543222 266789999999999999999999988766443
No 451
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=33.39 E-value=95 Score=23.68 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=13.4
Q ss_pred CChhHHHHHHhcCCCCCcccHHHHHHHHHh
Q 005265 99 GFIDDASRLFASMPERDQCSWNSMVSGFAQ 128 (705)
Q Consensus 99 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 128 (705)
...++|..+++.++.++..+|..+..++-.
T Consensus 42 t~~~qa~~Lld~L~trG~~Af~~F~~aL~~ 71 (86)
T cd08323 42 TQKEKAVMLINMILTKDNHAYVSFYNALLH 71 (86)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 334444444444444444444444444443
No 452
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=33.24 E-value=4.6e+02 Score=25.45 Aligned_cols=113 Identities=6% Similarity=0.055 Sum_probs=70.9
Q ss_pred HHHHHHHHHccCC-----CChhHHHHHHHHHHH-cC-ChHHHHHHHHHHHH-CCCCCChhhHHHHHHHHhccCcHHHHHH
Q 005265 442 VEDGCRIFETMVE-----RDWVSWNAMIVGCAQ-NG-YGTEALGLFKKMLL-CGEKPDHVTMIGVLCACSHAGLVEEGRK 513 (705)
Q Consensus 442 ~~~A~~~~~~~~~-----~~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 513 (705)
+.+|+.+|+.... .|...-..+++.... .+ ....-.++.+-+.. .|-.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 5667777773321 244444445554444 11 12222233333332 2456777778888888888888888888
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 514 YFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 514 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
+++......+..-|...|...+......|+..-..+++++-
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 88876544344556778888888888888888877777664
No 453
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.84 E-value=2.4e+02 Score=25.17 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hhH-----HHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 005265 508 VEEGRKYFSSMSKEHGLAPL-KDH-----YTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIW 563 (705)
Q Consensus 508 ~~~a~~~~~~~~~~~~~~p~-~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 563 (705)
.+.|+.+|+.+.++...+-+ ... -...+-.|.+.|.+++|.+++++.-..|+....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~ 146 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKL 146 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhH
Confidence 45666677766554321101 111 112334566777777777777766324444433
No 454
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.26 E-value=48 Score=36.81 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=28.7
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005265 538 LGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLL 587 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 587 (705)
...+|+++.|++.-.... |..+|..|......+|+.+-|+-.|++..
T Consensus 653 aLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 345666666666665544 55566666666666666666666666543
No 455
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=32.21 E-value=2.9e+02 Score=22.72 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH-------HhhCCCCCchH----HHHHHHHHhcCChhHHHHHHHHH
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKL-------LEIEPSNSGPY----VLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
++..|-.++...|++++++.-.+++ -+++.+...-| .+-+.++...|+.++|.+.|+..
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3334444444555554444333333 34444433333 34556677789999988888764
No 456
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.92 E-value=4.2e+02 Score=24.61 Aligned_cols=96 Identities=19% Similarity=0.136 Sum_probs=52.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhh--HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD---HVT--MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDH 530 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 530 (705)
...-.|.|+--|.-+..+.+|.+.|.. +.|+.|. ..+ =..-+......|+.++|++....+... -+..|...
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNREL 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhH
Confidence 334456666666666666666666643 3345552 222 233455667788888888777766433 23333322
Q ss_pred HHHHHH----HHHhcCChHHHHHHHHhC
Q 005265 531 YTCMVD----LLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 531 ~~~l~~----~~~~~g~~~~A~~~~~~~ 554 (705)
+-.|.. =+.|.|..++|+++.+.-
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 222221 145677777777777664
No 457
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.74 E-value=84 Score=22.44 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=40.6
Q ss_pred CCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHcc
Q 005265 15 AFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKC 67 (705)
Q Consensus 15 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 67 (705)
+.|+...++-++...++....+++...+.+..++|. .+..+|..-++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 457777888899999988889999999999999884 6777777777777653
No 458
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=31.57 E-value=1.2e+02 Score=18.89 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=23.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 595 GPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+|..|+.+-...++|++|.+-+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3578889999999999999888887754
No 459
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=31.01 E-value=71 Score=30.75 Aligned_cols=54 Identities=19% Similarity=0.184 Sum_probs=37.3
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP 558 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 558 (705)
..+.|+.++|..+|+... .+.|+ +....-+........+.-+|-.+|-+. .+.|
T Consensus 126 ~~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 357899999999999876 45666 555555555555566777777777665 4455
No 460
>PRK14700 recombination factor protein RarA; Provisional
Probab=30.41 E-value=5.3e+02 Score=25.26 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=45.5
Q ss_pred hHHHHHHHHH---HcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhccc-----HHHHHHHHHHHHHhCC
Q 005265 352 SWNALIAGYT---QNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLAD-----LQLGRQAHTHVVKHGL 416 (705)
Q Consensus 352 ~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 416 (705)
.+-.+|+++. +..+++.|+-++-+|++.|-.|....-..++-+....|. +..|...++.....|+
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3344566665 457899999999999999988888877777777766662 3344455555555554
No 461
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=30.35 E-value=92 Score=21.92 Aligned_cols=26 Identities=27% Similarity=0.151 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLL 485 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (705)
.-.+|.+|...|++++|.++.+++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34457777777778877777777655
No 462
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=29.77 E-value=1.1e+02 Score=31.65 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=46.7
Q ss_pred HHHhcCCHHHHHHHHHccCC--CChhHHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHH
Q 005265 435 MYMKCGSVEDGCRIFETMVE--RDWVSWNA-MIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEE 510 (705)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 510 (705)
-+.+.+.++.|..++.++.+ ||...|-+ -..++.+.+++..|+.=+.+.++ ..|+.. .|..=..+|...+.+.+
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHHHHHH
Confidence 34455556666666655542 32222222 22455556666666665555555 234332 33333344555555555
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHH
Q 005265 511 GRKYFSSMSKEHGLAPLKDHYTCMVD 536 (705)
Q Consensus 511 a~~~~~~~~~~~~~~p~~~~~~~l~~ 536 (705)
|...|+... .+.|+..-....++
T Consensus 91 A~~~l~~~~---~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 91 ALLDLEKVK---KLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHhh---hcCcCcHHHHHHHH
Confidence 555555443 34555444444333
No 463
>PHA02878 ankyrin repeat protein; Provisional
Probab=29.58 E-value=7.1e+02 Score=26.45 Aligned_cols=39 Identities=8% Similarity=0.013 Sum_probs=17.8
Q ss_pred HHHHHHHcCCCCChhh---HHHHHHHhhcCCChHHHHHHHhc
Q 005265 173 VHALLSKSRYSSDVYM---GSALIDMYGKCGRVSCARRVFDG 211 (705)
Q Consensus 173 ~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~ 211 (705)
+.+.+.+.|..++... ..+.+...+..|+.+-+..+++.
T Consensus 149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ 190 (477)
T PHA02878 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSY 190 (477)
T ss_pred HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHC
Confidence 4444455554443221 22334444555555555555544
No 464
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.50 E-value=5.1e+02 Score=25.38 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccC
Q 005265 172 QVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMR 213 (705)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 213 (705)
++++.+.+.++.|.-..+.=+.-.+.+.=.+.+.+.+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555555555555444444555555555555555554
No 465
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=29.24 E-value=9.1e+02 Score=27.64 Aligned_cols=83 Identities=14% Similarity=-0.019 Sum_probs=38.1
Q ss_pred CCCCcHHHHHHHHHHHHcCCCCChh-------hHHHHH-HHhhcCCChHHHHHHHhccCC--------CCcchHHHHHHH
Q 005265 163 GSVDFKMGTQVHALLSKSRYSSDVY-------MGSALI-DMYGKCGRVSCARRVFDGMRE--------RNIVSWNSLITC 226 (705)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~li-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~ 226 (705)
...++++|..+.+++...-..|+.. .+++|- .+....|+++.|.++-+.... ..++.+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4456666666666655442222211 122221 112234555555554433221 334445555555
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 005265 227 YEQNGPASDALEVFVRMMA 245 (705)
Q Consensus 227 ~~~~g~~~~A~~~~~~m~~ 245 (705)
..-.|++++|..+..+..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 507 AHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHhchHHHHHHHHHHHHH
Confidence 5555666666555554443
No 466
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=29.01 E-value=5.6e+02 Score=25.48 Aligned_cols=127 Identities=12% Similarity=0.147 Sum_probs=74.2
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh------ccCcHHHHHHHHHHhHHhcCCCCCh
Q 005265 455 RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACS------HAGLVEEGRKYFSSMSKEHGLAPLK 528 (705)
Q Consensus 455 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~------~~g~~~~a~~~~~~~~~~~~~~p~~ 528 (705)
.|...|+--+ .+++..++++....+. |........|.+|- ..-+|.....+|+.+. .+.|++
T Consensus 262 QDr~lW~r~l--------I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSP 329 (415)
T COG4941 262 QDRSLWDRAL--------IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSP 329 (415)
T ss_pred cchhhhhHHH--------HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCC
Confidence 4666665432 4677888888777754 77777666666552 2345667777777664 245553
Q ss_pred -hHHHHHHHHHHhcCChHHHHHHHHhCCCCC---CHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 529 -DHYTCMVDLLGRAGCLDEAKTLIEAMPMQP---DAVIWGSL-LAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 529 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p---~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.+.|--+ +....--.+.++...+...-.| +...|.+. .+.+.+.|+.++|...|++++.+.++..
T Consensus 330 vV~LNRAV-Ala~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 330 VVTLNRAV-ALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred eEeehHHH-HHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 2333322 2333333555666666653332 22233333 3337788888888888888888766543
No 467
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=28.81 E-value=3.6e+02 Score=22.80 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 005265 565 SLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 596 (705)
-|.-+|.+.++++.+.++.+.+++.+|++..+
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34445666777777777777777777776553
No 468
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.77 E-value=3e+02 Score=29.95 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=25.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC--CCCCChhhHHHHHHHHhccCcH
Q 005265 462 AMIVGCAQNGYGTEALGLFKKMLLC--GEKPDHVTMIGVLCACSHAGLV 508 (705)
Q Consensus 462 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~ 508 (705)
+|..+|..+|++..+.++++..... |-+.=...++..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5566666666666666666666543 1112223455555555555544
No 469
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=28.64 E-value=6e+02 Score=25.31 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=23.4
Q ss_pred HhccCcHHHHHHHHHHhHHhcCC--CCChhHH--HHHHHHHHhcCChHHHHHHHHh
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGL--APLKDHY--TCMVDLLGRAGCLDEAKTLIEA 553 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~ 553 (705)
.-+.++.++|.++++++...... .|+...| ..+...+...|+..++.+.+++
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd 140 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDD 140 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 33444566666666665443211 2332222 2233444455555555554443
No 470
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.58 E-value=3.1e+02 Score=23.44 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=12.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 005265 223 LITCYEQNGPASDALEVFVRMMASGIEPD 251 (705)
Q Consensus 223 li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 251 (705)
++..+...++.-.|.++++++.+.+...+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 33444444444444444444444443333
No 471
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.42 E-value=2.5e+02 Score=24.74 Aligned_cols=57 Identities=9% Similarity=-0.001 Sum_probs=23.2
Q ss_pred HhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccC
Q 005265 11 VGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCG 68 (705)
Q Consensus 11 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 68 (705)
...|++++..-.. +|+......++-.|.++++.+.+.+..++..|----|..+...|
T Consensus 18 ~~~GlR~T~qR~~-IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 18 AQRNVRLTPQRLE-VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHcCCCCCHHHHH-HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3344444443332 33333333344455555555554444333333323334444443
No 472
>PHA03100 ankyrin repeat protein; Provisional
Probab=27.85 E-value=7.5e+02 Score=26.17 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=12.6
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHcCCCCch
Q 005265 25 LLDSCLRSKSVSDTRRVHARIIKSQFASEI 54 (705)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 54 (705)
.|...++.|+.+ +.+.+.+.|..++.
T Consensus 38 ~L~~A~~~~~~~----ivk~Ll~~g~~~~~ 63 (480)
T PHA03100 38 PLYLAKEARNID----VVKILLDNGADINS 63 (480)
T ss_pred hhhhhhccCCHH----HHHHHHHcCCCCCC
Confidence 344444555543 34444556655543
No 473
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=27.52 E-value=1.6e+02 Score=22.66 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCCCeehHHHHHHHHHH
Q 005265 335 VKSARLMFTKMLERNVVSWNALIAGYTQ 362 (705)
Q Consensus 335 ~~~A~~~~~~~~~~~~~~~~~li~~~~~ 362 (705)
.+.+.++++.++.+.+.+|..+..++..
T Consensus 50 ~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 50 FSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 3444455555555555555555555543
No 474
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.22 E-value=1.8e+02 Score=29.82 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHH
Q 005265 291 GNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEAL 370 (705)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 370 (705)
...|++.++-.||+..|+++++.+.-... .+|.+.+.-.+.++-.+.-+|.-.+++.+|+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~--------------------~l~~~V~~~~is~~YyvGFaylMlrRY~DAi 184 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKK--------------------GLYTKVPACHISTYYYVGFAYLMLRRYADAI 184 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccc--------------------hhhccCcchheehHHHHHHHHHHHHHHHHHH
Confidence 34567777778888888877776652111 2333444445566666777777778888888
Q ss_pred HHHHHhh
Q 005265 371 GLFRLLK 377 (705)
Q Consensus 371 ~~~~~m~ 377 (705)
+.|...+
T Consensus 185 r~f~~iL 191 (404)
T PF10255_consen 185 RTFSQIL 191 (404)
T ss_pred HHHHHHH
Confidence 7777654
No 475
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=27.16 E-value=2.7e+02 Score=23.20 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=27.4
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005265 570 CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE 606 (705)
Q Consensus 570 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 606 (705)
+...-+.+.|+.+|+++++..|++...+..|+..+-.
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 3345577899999999999999999988888776644
No 476
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=26.98 E-value=6.4e+02 Score=25.10 Aligned_cols=122 Identities=14% Similarity=0.112 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHh---cCChHHHHH
Q 005265 233 ASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAK---CGKLNEARC 309 (705)
Q Consensus 233 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~ 309 (705)
.+.-+.++++.++.+ +-+.......+..+.+..+.+...+.++.++... +.+...|...++.... .-.++....
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 355567777777662 2445556667777777788888888888888863 5567777777765544 224555555
Q ss_pred HHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCC-------C-------eehHHHHHHHHHHcCChHHHHHHHHH
Q 005265 310 VFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLER-------N-------VVSWNALIAGYTQNGENEEALGLFRL 375 (705)
Q Consensus 310 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------~-------~~~~~~li~~~~~~g~~~~A~~~~~~ 375 (705)
+|.+.. +.+...... . ...+..+.....+.|..+.|+.+++.
T Consensus 124 ~y~~~l------------------------~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa 179 (321)
T PF08424_consen 124 VYEKCL------------------------RALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQA 179 (321)
T ss_pred HHHHHH------------------------HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHH
Confidence 443211 111111110 0 01223334445678889999999988
Q ss_pred hhhCCC
Q 005265 376 LKRESV 381 (705)
Q Consensus 376 m~~~g~ 381 (705)
+.+.++
T Consensus 180 ~lE~n~ 185 (321)
T PF08424_consen 180 LLEFNF 185 (321)
T ss_pred HHHHHc
Confidence 887664
No 477
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=26.88 E-value=3.7e+02 Score=22.32 Aligned_cols=72 Identities=13% Similarity=0.052 Sum_probs=0.0
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 005265 544 LDEAKTLIEAM-PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI--EPSNSGPYVLLSNMYAELGRWGEVVRVRK 618 (705)
Q Consensus 544 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 618 (705)
++++.+.|... ..+.|+.-...-+.--...++ ...+|..+... .-..+..|...+..+...|++.+|.++++
T Consensus 49 Lerc~~~f~~~~~YknD~RyLkiWi~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 49 LERCIRYFEDDERYKNDPRYLKIWLKYADNCDE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
No 478
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=26.85 E-value=1.8e+02 Score=21.76 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=6.4
Q ss_pred HhcCChhHHHHHHh
Q 005265 96 LKWGFIDDASRLFA 109 (705)
Q Consensus 96 ~~~g~~~~A~~~~~ 109 (705)
++.|+++-...+++
T Consensus 5 ~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 5 AQNGNLEILKFLLE 18 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34444444444444
No 479
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=26.74 E-value=6.6e+02 Score=25.15 Aligned_cols=133 Identities=10% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHH
Q 005265 91 IITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMG 170 (705)
Q Consensus 91 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 170 (705)
+-..++|.++-+.+..+-+.++.-......++..++-...-.+...+.+.+..+.. ||......++++.+........
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~~~~ 249 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPASDLV 249 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCchhHH
Q ss_pred HHHHHHHHHcCCCCChhhHHHHH-HHhhcCCChHHHHHHHhccCCCC-cchHHHHHH
Q 005265 171 TQVHALLSKSRYSSDVYMGSALI-DMYGKCGRVSCARRVFDGMRERN-IVSWNSLIT 225 (705)
Q Consensus 171 ~~~~~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~ 225 (705)
...++.++......+..+..++. ..+.-..+.+.+..+++.+.+.+ -..||.+..
T Consensus 250 ~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfa 306 (340)
T PF12069_consen 250 AILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFA 306 (340)
T ss_pred HHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHH
No 480
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.70 E-value=9.4e+02 Score=27.58 Aligned_cols=131 Identities=14% Similarity=0.089 Sum_probs=86.8
Q ss_pred HHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHH
Q 005265 434 DMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRK 513 (705)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 513 (705)
+....+|+++.|++.-..+- +...|..|+..-.+.|+.+-|+..|++... |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34567888888887766543 667899999999999999999999988765 3333334566788887776
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005265 514 YFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLE 588 (705)
Q Consensus 514 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 588 (705)
+.+-+.. +-|.. .....-.-.|+.++=.++++..+..|-. | -....+|.-++|+++.++.-.
T Consensus 720 m~~iae~----r~D~~---~~~qnalYl~dv~ervkIl~n~g~~~la--y----lta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEI----RNDAT---GQFQNALYLGDVKERVKILENGGQLPLA--Y----LTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHh----hhhhH---HHHHHHHHhccHHHHHHHHHhcCcccHH--H----HHHhhcCcHHHHHHHHHhhcc
Confidence 6654422 22321 1111222358888888888888644321 1 113467888899998888765
No 481
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.15 E-value=4.8e+02 Score=24.25 Aligned_cols=92 Identities=14% Similarity=0.053 Sum_probs=44.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccC---C--CChhHHH--HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMV---E--RDWVSWN--AMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGV 498 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~--~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 498 (705)
..-.|.|+--|.-...+.+|.+.|..-. . .|..+.+ .-|......|+.++|++....+...-+.-|...+-.+
T Consensus 26 ~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~L 105 (228)
T KOG2659|consen 26 REDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHL 105 (228)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHH
Confidence 3334455444444444445555554322 2 2333322 2355567777777777777665443233333222111
Q ss_pred H--H--HHhccCcHHHHHHHHHH
Q 005265 499 L--C--ACSHAGLVEEGRKYFSS 517 (705)
Q Consensus 499 l--~--~~~~~g~~~~a~~~~~~ 517 (705)
. . -..+.|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 1 1 23456666666666653
No 482
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=25.75 E-value=1.6e+03 Score=29.32 Aligned_cols=61 Identities=8% Similarity=-0.082 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005265 457 WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSK 520 (705)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (705)
...|-...+.....|+++.|...+-...+.+ .| ..+...+.-.-..|+...|+.+++....
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3456666666666777777777666655543 22 2334445556667777777777776654
No 483
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.67 E-value=1.4e+02 Score=30.59 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005265 531 YTCMVDLLGRAGCLDEAKTLIEAMPMQP----------DAVIWGSLLAACKVHRNIMLGEYVAKKLL 587 (705)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 587 (705)
.-.|++..+-.|++..|++.++.+.+.. ...++..+.-+|...+++..|.+.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888888887763221 22344455555666666666666666654
No 484
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.55 E-value=2.1e+02 Score=27.14 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=7.0
Q ss_pred HhccCcHHHHHHHHHHh
Q 005265 502 CSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~ 518 (705)
|...|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 33444444444444433
No 485
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.44 E-value=3.1e+02 Score=24.19 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=13.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhH
Q 005265 224 ITCYEQNGPASDALEVFVRMMASGIEPDEVT 254 (705)
Q Consensus 224 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 254 (705)
+..+...++.-.|.++++.+.+.+..++..|
T Consensus 32 L~~l~~~~~hlSa~eI~~~L~~~~~~is~aT 62 (169)
T PRK11639 32 LRLMSLQPGAISAYDLLDLLREAEPQAKPPT 62 (169)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhCCCCCcch
Confidence 3333333334444445555544444444333
No 486
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=25.18 E-value=3.8e+02 Score=29.19 Aligned_cols=22 Identities=9% Similarity=0.252 Sum_probs=14.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhC
Q 005265 293 ALVDMYAKCGKLNEARCVFDRM 314 (705)
Q Consensus 293 ~li~~~~~~g~~~~A~~~~~~~ 314 (705)
+|..+|...|++-.+.++++..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~ 54 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSF 54 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHH
Confidence 5666666667666666665543
No 487
>PRK09169 hypothetical protein; Validated
Probab=24.73 E-value=1.7e+03 Score=29.14 Aligned_cols=530 Identities=11% Similarity=0.032 Sum_probs=287.6
Q ss_pred chhHHHHHHHHhcCCChhhHHHHHHHHHHc-----CCCCchhhHHHHHHHHHccCChhhHHHHHhccC----C-------
Q 005265 19 SSPFAKLLDSCLRSKSVSDTRRVHARIIKS-----QFASEIFIQNRLIDVYAKCGCLYGARKVFDKMS----N------- 82 (705)
Q Consensus 19 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~------- 82 (705)
...+..+.+.+++.-+...+.+-...+... .-..+......++++++|=.+-..+...-+.+- .
T Consensus 122 ~~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~a 201 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQA 201 (2316)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHh
Confidence 556666777777766666655555555432 123456666778888888666555554443331 1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHhcCC-----C------CCcccHHHHHHHHHhCCChHHHHHHHHH----hHhC--
Q 005265 83 KNVFTWNSIITGLLKWGFIDDASRLFASMP-----E------RDQCSWNSMVSGFAQHDRFSEALGYFVK----MHSE-- 145 (705)
Q Consensus 83 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~------~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~-- 145 (705)
-+.......+++++|.-+-.........+- + -+......++++++|-.+-+.+...... +...
T Consensus 202 l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~ 281 (2316)
T PRK09169 202 MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPG 281 (2316)
T ss_pred cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChh
Confidence 244556667788887766554444333321 1 1455667788888886655444333222 2111
Q ss_pred -CCCCChhhHHHHHHHhhCCCCcHHHHHHHHH----HHH---cCCCCChhhHHHHHHHhhcCCChHHHH----HHHhccC
Q 005265 146 -NFALSEYSFGSALSACAGSVDFKMGTQVHAL----LSK---SRYSSDVYMGSALIDMYGKCGRVSCAR----RVFDGMR 213 (705)
Q Consensus 146 -g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~---~g~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~~~ 213 (705)
....|..-....++++++-.+-+.+...... +.. ..-..+..-....+++++|..+.+.+. .+-+.+.
T Consensus 282 lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~ 361 (2316)
T PRK09169 282 LRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLA 361 (2316)
T ss_pred hhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 1234667788888999887765543332222 211 112235555667788888888766533 2222222
Q ss_pred -------CCCcchHHHHHHHHHhcCChhH----HHHHHHHHHHC-C--CCCCHhHHHHHHHHHHccCChHHHHHHHHHHH
Q 005265 214 -------ERNIVSWNSLITCYEQNGPASD----ALEVFVRMMAS-G--IEPDEVTLASVVSACASLAAFKEGLQIHARLM 279 (705)
Q Consensus 214 -------~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~-g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 279 (705)
.-|..-....+.+++|-++-+. +..+..++... + -..|..-....+.+|++.+.-+.+......+.
T Consensus 362 ~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA 441 (2316)
T PRK09169 362 RDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALA 441 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 1234446667788888776542 33333333332 1 12566778888999998876554333322221
Q ss_pred ---HcC---CCCCChhHHHHHHHHHHhcCChHHH----HHHHhhCC-------CCCcccHHHHHHHHHhcCCHHHHHH--
Q 005265 280 ---RCE---KLRNDLVLGNALVDMYAKCGKLNEA----RCVFDRMP-------IRNVVSETSMVSGYAKASSVKSARL-- 340 (705)
Q Consensus 280 ---~~~---~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~-- 340 (705)
... .-..+..-....+++++|.++.+.+ ..+...+. .-+..-....+.+++|.+..+.+..
T Consensus 442 ~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA 521 (2316)
T PRK09169 442 ARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAA 521 (2316)
T ss_pred HHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHH
Confidence 110 0133455667778888887765433 23333332 1245556778889998887665433
Q ss_pred --HHHhcCC-------CCeehHHHHHHHHHHcCChHH----HHHHHHHhhhCC---CCcchhhHHHHHHHHhhcccHHHH
Q 005265 341 --MFTKMLE-------RNVVSWNALIAGYTQNGENEE----ALGLFRLLKRES---VCPTHYTFGNLLNACANLADLQLG 404 (705)
Q Consensus 341 --~~~~~~~-------~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~~~a 404 (705)
+...+.. -++.-....+.++++-.+.+. |..+...+.... -..+...+...+.++++.++...+
T Consensus 522 ~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~ac 601 (2316)
T PRK09169 522 EALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDAC 601 (2316)
T ss_pred HHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhH
Confidence 2222221 255567778888888766322 333444333221 234567788889999988764333
Q ss_pred H----HHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC-----------CCChhHHHHHHHHHHH
Q 005265 405 R----QAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV-----------ERDWVSWNAMIVGCAQ 469 (705)
Q Consensus 405 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~ 469 (705)
. .+...+.+..- .....+..-...++.+++|-.+.+.+......+. .-+..-+..++.++++
T Consensus 602 r~Aa~aLA~rla~~~~---~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSK 678 (2316)
T PRK09169 602 RAAAEALAGRLARDAG---LLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSK 678 (2316)
T ss_pred HHHHHHHHHHHHhccc---cccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHh
Confidence 3 33333322110 0014566777778888888877665544333221 1255567777889998
Q ss_pred cCChHHHHHHHHHHH----HCC---CCCChhhHHHHHHHHhccCcHHHH----HHHHHHhHHh--cCCCCChhHHHHHHH
Q 005265 470 NGYGTEALGLFKKML----LCG---EKPDHVTMIGVLCACSHAGLVEEG----RKYFSSMSKE--HGLAPLKDHYTCMVD 536 (705)
Q Consensus 470 ~g~~~~A~~~~~~m~----~~g---~~p~~~~~~~ll~~~~~~g~~~~a----~~~~~~~~~~--~~~~p~~~~~~~l~~ 536 (705)
-.+...+.+....+- ..+ -.-|......+++++++--.-+.+ ..+...+... .....+.......++
T Consensus 679 Wp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~~~acr~A~~~LA~rL~~~~~l~~a~~aQ~lAnsLN 758 (2316)
T PRK09169 679 WPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPEEEACRAAAEALAGRLAADADLRQAMNPQGLANSLN 758 (2316)
T ss_pred CCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccCccHHHHHHHHHHHHHhcChHHHhhcCHHHHHHHHH
Confidence 887665444433332 111 123445566777777764432222 2233333221 011234455566667
Q ss_pred HHHhcCChHHHHHHH
Q 005265 537 LLGRAGCLDEAKTLI 551 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~ 551 (705)
++.|--+-..+.+.+
T Consensus 759 aLsKwp~~~~c~~a~ 773 (2316)
T PRK09169 759 ALSKWPQEPACQQAA 773 (2316)
T ss_pred HHHhCCCCHHHHHHH
Confidence 777766655544443
No 488
>PRK12356 glutaminase; Reviewed
Probab=24.72 E-value=6.9e+02 Score=24.75 Aligned_cols=110 Identities=9% Similarity=0.064 Sum_probs=51.4
Q ss_pred HHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-Ch-hhHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005265 443 EDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DH-VTMIGVLCACSHAGLVEEGRKYFSSMSK 520 (705)
Q Consensus 443 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (705)
+.-+++++++...++..-..+...-...++-..|+..+ |.+.|.-+ |. .+.....+.|+-....++.-.+..-+ .
T Consensus 140 ~~il~~~~~~ag~~l~~de~v~~SE~~t~~RNrAlA~~--lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~L-A 216 (319)
T PRK12356 140 QRILDGQQRFAGRELALSDEVYQSEQTTNFHNRAIAWL--LYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATL-A 216 (319)
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHhhhHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHH-H
Confidence 33344444444332222222223333344444454444 55555443 22 24444455555544444443333333 2
Q ss_pred hcCCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005265 521 EHGLAP-------LKDHYTCMVDLLGRAGCLDEAKTLIEAMP 555 (705)
Q Consensus 521 ~~~~~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 555 (705)
..|+.| +..+-..+......+|.++.+-++.-+.+
T Consensus 217 n~G~~P~tg~~vl~~~~~r~v~s~M~TCGmYd~SG~fa~~VG 258 (319)
T PRK12356 217 AGGVNPLTGKRVVDADNVPYILAEMTMEGLYERSGDWAYTVG 258 (319)
T ss_pred cCCcCCCCCCeecCHHHHHHHHHHHHHcCCccchhhHHHHhC
Confidence 225544 13334445556677788887777766653
No 489
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=24.60 E-value=5.1e+02 Score=27.04 Aligned_cols=249 Identities=10% Similarity=0.057 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcc-----------cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHH
Q 005265 365 ENEEALGLFRLLKRESVCPTHYTFGNLLNACANLA-----------DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLI 433 (705)
Q Consensus 365 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 433 (705)
++++|..+.+.+ |....|...+.-..+.| .+++-.++++.+.+.| .+| +...-+
T Consensus 29 d~~eav~y~k~~------p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g-------~ad--~lp~TI 93 (480)
T TIGR01503 29 DLQDAVDYHKSI------PAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG-------GAD--FLPSTI 93 (480)
T ss_pred CHHHHHHHHHhC------CccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc-------CCC--ccceee
Q ss_pred HHHHhcCCHHHHHHHHHccCCC-------------ChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHH
Q 005265 434 DMYMKCGSVEDGCRIFETMVER-------------DWVSWNAMIVGCAQ----NGYGTEALGLFKKMLLCGEKPDHVTMI 496 (705)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 496 (705)
+.|.+.+++++|..-+++-.+. .+.....++...-. ..-..++..+++-+...|+.-..---.
T Consensus 94 DSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtpDarlL~e~~~a~G~~a~EGG~I 173 (480)
T TIGR01503 94 DAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTPDARLLAEIILAGGFTSFEGGGI 173 (480)
T ss_pred ecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCCcHHHHHHHHHHcCCCccCCCcc
Q ss_pred HHHHHHhccCcHHHHHHHHH---HhHHhc---CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 005265 497 GVLCACSHAGLVEEGRKYFS---SMSKEH---GLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAA- 569 (705)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~---~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~- 569 (705)
+.---|++.=-+++++..|+ ++...+ |+..+.++|..|...++ +|....--+++.+
T Consensus 174 SYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtLv-----------------PPsisiav~ilE~L 236 (480)
T TIGR01503 174 SYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTLV-----------------PPSISNAIGIIEGL 236 (480)
T ss_pred eeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCcc-----------------ChHHHHHHHHHHHH
Q ss_pred -HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeE--EEECCEEeEEeeC
Q 005265 570 -CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSW--IEILGHVNVFMVK 646 (705)
Q Consensus 570 -~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 646 (705)
...+| .-++.-.|.++|+..+=...+..+++..-.--+...| +.+...+|.++.+
T Consensus 237 la~eqG----------------------Vksisvgy~Q~Gn~~QDiaai~aL~~l~~eYl~~~g~~Dv~i~tV~hqwMG~ 294 (480)
T TIGR01503 237 LAAEQG----------------------VKNITVGYGQVGNLTQDIAALRALEEQTNEYLKAYGYNDVFVTTVFHQWMGG 294 (480)
T ss_pred HHHHcC----------------------CeEEEeccccCCChHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeeeccCC
Q ss_pred CcCCCChhHHHHHHHHHHHHH
Q 005265 647 DKRHPLNKEIYLVLKMLTREM 667 (705)
Q Consensus 647 ~~~~~~~~~~~~~l~~l~~~~ 667 (705)
.-..+..........-....+
T Consensus 295 FP~d~~~A~~lis~~a~~A~l 315 (480)
T TIGR01503 295 FPEDESKAFGVISTATTIAAL 315 (480)
T ss_pred CCCChhhhhhHHHHHHHHHHH
No 490
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=24.25 E-value=2.9e+02 Score=21.45 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=30.1
Q ss_pred CcCCCChhHHHHHHHHHHHHHHHcCcccCCC-ccccccccc
Q 005265 647 DKRHPLNKEIYLVLKMLTREMKRVGYVPNAS-DDEAYEEQN 686 (705)
Q Consensus 647 ~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~-~~~~~~~~~ 686 (705)
...||..........++..-..+.|..|... -+....+++
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl~~~~~~~ 97 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASRAKLAVPKKEE 97 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhccCCCcCc
Confidence 3679988888888888888888899999988 444444333
No 491
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=24.21 E-value=6.6e+02 Score=24.32 Aligned_cols=180 Identities=12% Similarity=-0.064 Sum_probs=98.3
Q ss_pred cCCHHHHHHHHHccCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCcHH
Q 005265 439 CGSVEDGCRIFETMVE-RDWVSWNAMIVGCAQ----NGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSH----AGLVE 509 (705)
Q Consensus 439 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~ 509 (705)
.+++..|...+..... .+......+...|.. ..+..+|.++|..+.+.|..+-... +...+.. ..+..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~---lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFN---LGLMYANGRGVPLDLV 130 (292)
T ss_pred cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHh---HHHHHhcCCCcccCHH
Confidence 3445555555555543 233333334444433 3356778888887766654332222 3333332 33778
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-------ChHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHH
Q 005265 510 EGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAG-------CLDEAKTLIEAMPMQPDAVIWGSLLAACK----VHRNIML 578 (705)
Q Consensus 510 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~ 578 (705)
+|..+++.+.+. |..+.......+...|..-+ +...|...+.++-..-+......+...|. ...+.++
T Consensus 131 ~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 131 KALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred HHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHH
Confidence 888888877554 44332223444444444431 23367777777622224444444443332 2348889
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcC---------------ChhHHHHHHHHHHhCCC
Q 005265 579 GEYVAKKLLEIEPSNSGPYVLLSNMYAELG---------------RWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 579 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 625 (705)
|...|+++-+... ......++ .+...| +...|...+......+.
T Consensus 210 A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 210 AFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 9999999888766 44455666 566555 66666777766665543
No 492
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.78 E-value=2.2e+02 Score=26.05 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcc---------cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 005265 388 FGNLLNACANLA---------DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM 452 (705)
Q Consensus 388 ~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 452 (705)
|..+..+|++.| +++.-.++++...+.|.. ..=+.+|+++|+--.-.-++++..+++..+
T Consensus 166 ~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~-----kviPHIYssiIDk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 166 YAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVE-----KVIPHVYSSIIDKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred HHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCC-----eeccccceeccccccCCCCHHHHHHHHHHh
Confidence 455556665554 566677777888888874 345577888887666666777777777654
No 493
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.70 E-value=13 Score=36.16 Aligned_cols=100 Identities=8% Similarity=-0.036 Sum_probs=67.7
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCC
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRH 650 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (705)
...|.++.|++.+-.+++++|.....|..-+.++.+.+++..|++-+....+.......+.-|-.. .|+
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~---A~r-------- 193 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGY---AER-------- 193 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhH---HHH--------
Confidence 456889999999999999999999999999999999999999999887776543322222212110 000
Q ss_pred CChhHHHHHHHHHHHHHHHcCcccCCC-cccccc
Q 005265 651 PLNKEIYLVLKMLTREMKRVGYVPNAS-DDEAYE 683 (705)
Q Consensus 651 ~~~~~~~~~l~~l~~~~~~~g~~~~~~-~~~~~~ 683 (705)
......+....++.-.+.+|-+++. ++..|.
T Consensus 194 --llg~~e~aa~dl~~a~kld~dE~~~a~lKeV~ 225 (377)
T KOG1308|consen 194 --LLGNWEEAAHDLALACKLDYDEANSATLKEVF 225 (377)
T ss_pred --HhhchHHHHHHHHHHHhccccHHHHHHHHHhc
Confidence 1111223333556666778888877 776664
No 494
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=23.66 E-value=9e+02 Score=25.66 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=15.7
Q ss_pred CchhhHHHHHHHHHccCChhhHHHHHhccC
Q 005265 52 SEIFIQNRLIDVYAKCGCLYGARKVFDKMS 81 (705)
Q Consensus 52 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 81 (705)
.|+..|...+..+-+.+.+.+...+|.+|.
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l 132 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAML 132 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 355555555555544444555555555554
No 495
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.38 E-value=8.9e+02 Score=25.55 Aligned_cols=101 Identities=15% Similarity=0.031 Sum_probs=57.7
Q ss_pred HHHhcCCHHHHHHHHHccC---CC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-------CCCCCChh--
Q 005265 435 MYMKCGSVEDGCRIFETMV---ER---------DWVSWNAMIVGCAQNGYGTEALGLFKKMLL-------CGEKPDHV-- 493 (705)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~---~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~~-- 493 (705)
.+.-.|++.+|.+++.... .+ ....||.|.-.+.+.|.+.-+..+|.+.++ .|++|...
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3445667777777665432 11 223456666666666666666666666553 45555321
Q ss_pred ---------hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 005265 494 ---------TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLL 538 (705)
Q Consensus 494 ---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 538 (705)
+|+.- -.+.+.|++-.|.+.|...++.+ ..++..|-.|..+|
T Consensus 329 ls~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 329 LSQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECC 379 (696)
T ss_pred hhcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHH
Confidence 23222 24567788888888887776654 34455666666655
No 496
>PHA03100 ankyrin repeat protein; Provisional
Probab=23.34 E-value=9e+02 Score=25.56 Aligned_cols=71 Identities=11% Similarity=-0.034 Sum_probs=34.6
Q ss_pred HHHHHHHhccCCCCchh--HHHHHHH-----HhcCCChhhHHHHHHHHHHcCCCCchhhH--HHHHHHHH--ccCChhhH
Q 005265 5 RSVKQIVGDLAFLDSSP--FAKLLDS-----CLRSKSVSDTRRVHARIIKSQFASEIFIQ--NRLIDVYA--KCGCLYGA 73 (705)
Q Consensus 5 ~~~~~~~~~~~~~~~~~--~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~--~~g~~~~A 73 (705)
.+++.+.+.|..|+... ..+.+.. +...++. ++.+.+.+.|..++.... .+.+...+ ..|+.+-+
T Consensus 49 ~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~----~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv 124 (480)
T PHA03100 49 DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVK----EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIV 124 (480)
T ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchH----HHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHH
Confidence 46677777787776532 1233444 4444433 344455566655432211 12233333 55666555
Q ss_pred HHHHhc
Q 005265 74 RKVFDK 79 (705)
Q Consensus 74 ~~~~~~ 79 (705)
..+++.
T Consensus 125 ~~Ll~~ 130 (480)
T PHA03100 125 EYLLDN 130 (480)
T ss_pred HHHHHc
Confidence 555554
No 497
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=23.22 E-value=2.2e+02 Score=29.06 Aligned_cols=19 Identities=21% Similarity=-0.039 Sum_probs=9.6
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 005265 534 MVDLLGRAGCLDEAKTLIE 552 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~ 552 (705)
|+-+|.+.++.+-|+.-..
T Consensus 234 lv~CYL~~rkpdlALnh~h 252 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSH 252 (569)
T ss_pred HHHhhhhcCCCchHHHHHh
Confidence 3445555555555554433
No 498
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=23.05 E-value=1.3e+02 Score=22.81 Aligned_cols=30 Identities=7% Similarity=0.183 Sum_probs=13.9
Q ss_pred hcCChhHHHHHHhcCCCCCcccHHHHHHHHH
Q 005265 97 KWGFIDDASRLFASMPERDQCSWNSMVSGFA 127 (705)
Q Consensus 97 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 127 (705)
...+.+.|..+++-++ +++.+|.+++.++.
T Consensus 42 ~~t~~~qa~~LLdiL~-rGp~Af~~F~esL~ 71 (84)
T cd08810 42 RTTSRKQAGKLLDILA-ENPKGLDALIESIR 71 (84)
T ss_pred cCCcHHHHHHHHHHHh-hCchHHHHHHHHHH
Confidence 3344444444444444 44444444444443
No 499
>PF13934 ELYS: Nuclear pore complex assembly
Probab=22.64 E-value=6.4e+02 Score=23.56 Aligned_cols=104 Identities=19% Similarity=0.147 Sum_probs=51.7
Q ss_pred HHHHHHHH--HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 005265 461 NAMIVGCA--QNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLL 538 (705)
Q Consensus 461 ~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 538 (705)
...+.|+. .++++++|++.+-.- .+.|+.. .-++.++...|+.+.|..+++.+. ..-.+......++..
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-
Confidence 33444433 356666666665211 1222221 135566666777777777777442 111112223333333
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005265 539 GRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVH 573 (705)
Q Consensus 539 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 573 (705)
..+|.+.||..+.+...-.-....|..++..|...
T Consensus 151 La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence 55677777777777654221233555566655543
No 500
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=21.93 E-value=7.1e+02 Score=23.86 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccC
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMV 453 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~ 453 (705)
.+.++..+.+.|....|..+.+.+.
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~ 109 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYR 109 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhc
Confidence 3456666666677777776665554
Done!