Query 005265
Match_columns 705
No_of_seqs 723 out of 4172
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 20:21:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2E-40 6.7E-45 364.6 39.5 480 95-623 63-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.5E-38 5E-43 349.6 39.6 448 127-624 64-546 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-25 7.6E-30 230.3 42.2 368 226-609 8-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-25 9.3E-30 229.7 39.5 348 259-622 6-367 (388)
5 4g26_A Pentatricopeptide repea 99.9 1E-26 3.5E-31 243.9 22.0 184 351-541 27-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 1.6E-26 5.5E-31 242.4 21.1 217 133-399 7-224 (501)
7 2gw1_A Mitochondrial precursor 99.9 4.8E-22 1.6E-26 213.7 35.6 422 187-623 7-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.4E-22 4.9E-27 217.8 30.9 444 118-600 8-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.1E-21 7.2E-26 204.9 33.5 317 289-619 27-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 7.8E-21 2.7E-25 205.5 35.4 246 364-623 216-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 3.2E-20 1.1E-24 195.8 36.1 360 218-612 27-443 (450)
12 3fp2_A TPR repeat-containing p 99.9 3.6E-20 1.2E-24 200.2 34.0 427 117-597 26-499 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 6.4E-17 2.2E-21 179.1 51.9 519 22-616 842-1377(1630)
14 1xi4_A Clathrin heavy chain; a 99.8 6.2E-16 2.1E-20 171.3 52.8 283 294-618 1055-1340(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 5.5E-18 1.9E-22 172.5 34.4 294 288-622 3-334 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 1.6E-17 5.6E-22 169.0 35.0 205 392-608 127-354 (359)
17 3hym_B Cell division cycle pro 99.8 8.4E-17 2.9E-21 161.7 30.0 243 352-604 58-314 (330)
18 3hym_B Cell division cycle pro 99.8 7.7E-17 2.6E-21 161.9 29.6 262 348-622 20-298 (330)
19 1fch_A Peroxisomal targeting s 99.8 1.5E-17 5.1E-22 170.1 24.5 275 333-620 39-356 (368)
20 2xm6_A Protein corresponding t 99.8 2.6E-15 9E-20 159.6 41.3 365 185-606 38-452 (490)
21 2ooe_A Cleavage stimulation fa 99.8 2.5E-15 8.5E-20 161.5 41.2 407 185-623 12-492 (530)
22 1b89_A Protein (clathrin heavy 99.8 4E-17 1.4E-21 162.7 21.6 184 197-405 14-197 (449)
23 1b89_A Protein (clathrin heavy 99.8 5.9E-16 2E-20 154.3 28.5 222 97-379 15-236 (449)
24 2xm6_A Protein corresponding t 99.7 1.6E-14 5.4E-19 153.6 40.4 352 215-625 37-434 (490)
25 4eqf_A PEX5-related protein; a 99.7 9.1E-17 3.1E-21 164.1 21.7 259 349-619 64-352 (365)
26 2ooe_A Cleavage stimulation fa 99.7 1E-14 3.4E-19 156.8 37.6 216 367-593 255-496 (530)
27 1fch_A Peroxisomal targeting s 99.7 2.8E-16 9.6E-21 160.6 24.1 255 360-623 35-314 (368)
28 3mkr_A Coatomer subunit epsilo 99.7 2.8E-15 9.7E-20 146.6 30.0 271 328-617 8-288 (291)
29 4g1t_A Interferon-induced prot 99.7 2.9E-15 9.8E-20 158.8 31.6 369 216-634 50-470 (472)
30 4eqf_A PEX5-related protein; a 99.7 8.2E-16 2.8E-20 156.9 25.1 231 384-623 64-310 (365)
31 3mkr_A Coatomer subunit epsilo 99.7 1.4E-15 4.7E-20 148.9 24.1 246 357-623 6-264 (291)
32 3cv0_A Peroxisome targeting si 99.7 1.1E-15 3.6E-20 153.3 23.8 260 349-620 20-312 (327)
33 4g1t_A Interferon-induced prot 99.7 5E-14 1.7E-18 149.2 29.5 377 187-601 52-471 (472)
34 3spa_A Mtrpol, DNA-directed RN 99.6 7.9E-17 2.7E-21 173.0 5.7 146 86-231 128-286 (1134)
35 2pl2_A Hypothetical conserved 99.6 1.5E-14 5E-19 135.1 19.5 194 423-621 2-212 (217)
36 3cv0_A Peroxisome targeting si 99.6 7.4E-14 2.5E-18 139.8 25.8 229 384-623 20-269 (327)
37 3spa_A Mtrpol, DNA-directed RN 99.6 5.9E-16 2E-20 166.3 9.3 131 423-554 124-262 (1134)
38 3uq3_A Heat shock protein STI1 99.6 1.4E-13 4.7E-18 132.5 22.6 217 387-623 7-236 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.5E-14 2.9E-18 135.5 21.3 241 362-617 17-269 (275)
40 3uq3_A Heat shock protein STI1 99.6 1.2E-13 4E-18 133.1 21.0 237 351-602 6-255 (258)
41 3e4b_A ALGK; tetratricopeptide 99.5 4.2E-13 1.4E-17 140.2 23.3 205 400-622 194-420 (452)
42 3u4t_A TPR repeat-containing p 99.5 4.5E-13 1.5E-17 130.2 22.1 175 429-608 77-269 (272)
43 2h6f_A Protein farnesyltransfe 99.5 1E-12 3.5E-17 132.8 22.7 244 351-607 98-366 (382)
44 2ho1_A Type 4 fimbrial biogene 99.5 1.8E-12 6.2E-17 124.2 23.0 196 426-624 37-239 (252)
45 2vq2_A PILW, putative fimbrial 99.5 2.9E-12 1E-16 120.2 23.5 198 423-623 5-211 (225)
46 3e4b_A ALGK; tetratricopeptide 99.5 2.6E-12 9E-17 134.2 25.3 342 259-625 10-389 (452)
47 1ouv_A Conserved hypothetical 99.5 1E-11 3.5E-16 120.6 26.3 222 386-625 7-253 (273)
48 2pl2_A Hypothetical conserved 99.5 2.9E-12 9.8E-17 119.5 20.8 194 348-554 3-211 (217)
49 2h6f_A Protein farnesyltransfe 99.5 2.2E-12 7.7E-17 130.3 21.4 222 386-620 98-344 (382)
50 4a1s_A PINS, partner of inscut 99.5 7.1E-13 2.4E-17 137.5 18.1 268 353-623 51-372 (411)
51 3u4t_A TPR repeat-containing p 99.5 3.5E-12 1.2E-16 123.8 21.7 223 389-623 7-250 (272)
52 2q7f_A YRRB protein; TPR, prot 99.5 1.4E-12 4.7E-17 124.3 18.3 191 428-622 25-221 (243)
53 2q7f_A YRRB protein; TPR, prot 99.5 1.5E-12 5E-17 124.0 18.5 182 423-607 54-240 (243)
54 2ho1_A Type 4 fimbrial biogene 99.5 1.1E-11 3.6E-16 118.8 24.6 200 389-597 41-246 (252)
55 3sf4_A G-protein-signaling mod 99.5 1.6E-12 5.3E-17 134.5 19.9 272 350-622 9-335 (406)
56 3vtx_A MAMA; tetratricopeptide 99.5 4.9E-12 1.7E-16 114.6 20.5 163 456-623 4-170 (184)
57 4abn_A Tetratricopeptide repea 99.5 7.8E-13 2.7E-17 139.1 16.8 208 401-620 84-318 (474)
58 3ro2_A PINS homolog, G-protein 99.5 2.5E-12 8.5E-17 129.0 19.9 268 353-623 8-332 (338)
59 2vq2_A PILW, putative fimbrial 99.5 1.7E-11 6E-16 114.9 24.5 205 386-600 9-222 (225)
60 1ouv_A Conserved hypothetical 99.4 2.8E-11 9.4E-16 117.5 25.3 227 349-594 5-256 (273)
61 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.6E-11 5.6E-16 119.2 23.7 242 230-515 18-269 (275)
62 4e6h_A MRNA 3'-END-processing 99.4 1.1E-09 3.9E-14 118.1 38.5 439 132-603 48-583 (679)
63 3sf4_A G-protein-signaling mod 99.4 4.1E-12 1.4E-16 131.3 18.6 297 286-611 7-364 (406)
64 4a1s_A PINS, partner of inscut 99.4 9.6E-12 3.3E-16 128.9 18.0 240 352-592 88-375 (411)
65 4gyw_A UDP-N-acetylglucosamine 99.4 1.2E-11 4.2E-16 135.1 18.4 162 456-622 8-173 (723)
66 3vtx_A MAMA; tetratricopeptide 99.3 3.6E-11 1.2E-15 108.8 17.4 166 424-594 3-175 (184)
67 3ro2_A PINS homolog, G-protein 99.3 4.8E-11 1.6E-15 119.5 20.1 280 259-592 12-335 (338)
68 3ulq_A Response regulator aspa 99.3 3.1E-11 1.1E-15 123.7 18.6 230 391-622 109-367 (383)
69 4e6h_A MRNA 3'-END-processing 99.3 6.8E-09 2.3E-13 112.1 35.7 143 36-179 49-222 (679)
70 2ond_A Cleavage stimulation fa 99.3 2.1E-10 7E-15 113.4 22.1 211 402-624 33-271 (308)
71 2ond_A Cleavage stimulation fa 99.3 8.7E-10 3E-14 108.9 26.6 217 367-595 33-276 (308)
72 3nf1_A KLC 1, kinesin light ch 99.3 3.7E-11 1.3E-15 119.0 16.8 200 423-622 24-306 (311)
73 1hz4_A MALT regulatory protein 99.3 3.1E-09 1.1E-13 108.2 29.9 265 355-622 19-321 (373)
74 3nf1_A KLC 1, kinesin light ch 99.3 1.9E-11 6.7E-16 121.0 12.9 242 351-592 28-310 (311)
75 4i17_A Hypothetical protein; T 99.3 9.4E-11 3.2E-15 110.3 16.8 188 423-622 4-208 (228)
76 4abn_A Tetratricopeptide repea 99.3 1.2E-10 4E-15 122.5 18.6 177 442-623 84-287 (474)
77 4i17_A Hypothetical protein; T 99.3 2.6E-10 9E-15 107.2 19.3 152 456-610 6-169 (228)
78 3as5_A MAMA; tetratricopeptide 99.3 2.7E-10 9.1E-15 102.9 18.3 161 426-623 8-173 (186)
79 3q15_A PSP28, response regulat 99.2 1.3E-09 4.6E-14 111.2 23.5 235 354-588 105-364 (378)
80 3as5_A MAMA; tetratricopeptide 99.2 1.6E-09 5.3E-14 97.8 19.7 138 423-595 39-179 (186)
81 3ulq_A Response regulator aspa 99.2 1.5E-09 5.2E-14 111.0 20.2 235 356-590 109-369 (383)
82 1hz4_A MALT regulatory protein 99.1 4.1E-08 1.4E-12 99.9 29.3 269 222-519 19-320 (373)
83 4gyw_A UDP-N-acetylglucosamine 99.1 5.5E-10 1.9E-14 122.1 15.5 164 423-591 6-176 (723)
84 3qky_A Outer membrane assembly 99.1 2.9E-09 1E-13 102.3 18.7 204 423-669 12-247 (261)
85 3edt_B KLC 2, kinesin light ch 99.1 1.6E-09 5.6E-14 105.3 16.1 227 396-622 12-280 (283)
86 3q15_A PSP28, response regulat 99.1 4.2E-08 1.4E-12 100.0 26.2 238 222-485 106-364 (378)
87 1qqe_A Vesicular transport pro 99.1 2.6E-09 9E-14 104.5 15.7 166 426-593 77-273 (292)
88 3qky_A Outer membrane assembly 99.0 6.9E-09 2.4E-13 99.7 17.3 167 426-612 52-250 (261)
89 1qqe_A Vesicular transport pro 99.0 2E-09 6.7E-14 105.4 13.5 187 433-621 44-267 (292)
90 4ga2_A E3 SUMO-protein ligase 99.0 5.8E-10 2E-14 96.7 8.4 138 467-609 7-149 (150)
91 3mv2_B Coatomer subunit epsilo 99.0 3.1E-08 1.1E-12 94.7 20.5 174 445-623 85-282 (310)
92 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.6E-08 5.3E-13 94.6 18.3 181 425-625 3-215 (225)
93 4ga2_A E3 SUMO-protein ligase 99.0 1.6E-09 5.5E-14 93.8 9.9 122 498-622 3-128 (150)
94 3edt_B KLC 2, kinesin light ch 99.0 2.1E-08 7.3E-13 97.3 18.4 206 384-589 42-281 (283)
95 3qou_A Protein YBBN; thioredox 99.0 1.8E-08 6.3E-13 98.0 17.3 176 442-622 102-283 (287)
96 2fo7_A Synthetic consensus TPR 98.9 2.3E-08 8E-13 84.4 15.5 124 498-623 7-132 (136)
97 2pzi_A Probable serine/threoni 98.9 2.4E-09 8.1E-14 117.8 11.1 167 437-609 402-583 (681)
98 3mv2_B Coatomer subunit epsilo 98.9 8.7E-08 3E-12 91.5 20.3 179 404-596 85-289 (310)
99 3gyz_A Chaperone protein IPGC; 98.9 7.8E-09 2.7E-13 89.0 11.6 101 523-623 30-133 (151)
100 4gco_A Protein STI-1; structur 98.9 9.3E-09 3.2E-13 85.8 11.6 99 524-622 8-109 (126)
101 3rjv_A Putative SEL1 repeat pr 98.9 9.9E-08 3.4E-12 88.1 19.4 173 444-625 4-199 (212)
102 2fo7_A Synthetic consensus TPR 98.9 8.6E-08 2.9E-12 80.8 16.6 132 459-593 3-136 (136)
103 2r5s_A Uncharacterized protein 98.8 3.7E-08 1.3E-12 88.0 13.1 76 547-622 93-172 (176)
104 3urz_A Uncharacterized protein 98.8 6E-08 2E-12 89.3 14.3 159 429-593 7-190 (208)
105 2vsy_A XCC0866; transferase, g 98.8 4.2E-08 1.4E-12 106.0 15.4 158 439-601 2-169 (568)
106 2vgx_A Chaperone SYCD; alterna 98.8 2.5E-08 8.4E-13 86.0 10.9 101 523-623 15-118 (148)
107 2ifu_A Gamma-SNAP; membrane fu 98.8 4.1E-08 1.4E-12 96.7 13.1 186 427-615 37-253 (307)
108 2pzi_A Probable serine/threoni 98.8 2.7E-07 9.1E-12 101.5 20.8 187 396-595 402-608 (681)
109 3qou_A Protein YBBN; thioredox 98.8 2E-07 7E-12 90.5 17.1 132 490-624 114-249 (287)
110 2uy1_A Cleavage stimulation fa 98.7 6.6E-06 2.2E-10 86.2 28.6 102 164-281 7-118 (493)
111 3u3w_A Transcriptional activat 98.7 1.7E-06 5.9E-11 84.4 22.5 195 423-622 43-265 (293)
112 2vsy_A XCC0866; transferase, g 98.7 1.9E-07 6.6E-12 100.8 17.1 150 470-624 2-158 (568)
113 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.8E-07 9.5E-12 86.0 16.0 149 426-595 41-219 (225)
114 2qfc_A PLCR protein; TPR, HTH, 98.7 5E-07 1.7E-11 88.2 18.3 166 457-622 75-265 (293)
115 2r5s_A Uncharacterized protein 98.7 1.4E-07 4.8E-12 84.1 13.1 157 427-588 7-172 (176)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.7E-07 9.3E-12 85.2 15.5 125 495-624 9-151 (213)
117 4gco_A Protein STI-1; structur 98.7 1.5E-07 5.2E-12 78.4 12.3 113 488-603 8-124 (126)
118 2xcb_A PCRH, regulatory protei 98.7 2.4E-07 8.4E-12 79.1 13.4 101 523-623 12-115 (142)
119 3urz_A Uncharacterized protein 98.7 7.2E-07 2.5E-11 81.9 17.0 136 428-568 56-198 (208)
120 2uy1_A Cleavage stimulation fa 98.7 7.7E-06 2.6E-10 85.6 26.4 373 66-485 6-412 (493)
121 3upv_A Heat shock protein STI1 98.6 3E-07 1E-11 76.7 12.2 96 528-623 4-101 (126)
122 2ifu_A Gamma-SNAP; membrane fu 98.6 6.3E-07 2.2E-11 88.1 16.0 196 398-621 4-222 (307)
123 3dra_A Protein farnesyltransfe 98.6 5.4E-06 1.8E-10 80.1 21.4 218 366-597 49-296 (306)
124 3dra_A Protein farnesyltransfe 98.6 3.1E-05 1.1E-09 74.7 26.5 167 452-622 98-286 (306)
125 4f3v_A ESX-1 secretion system 98.6 3.6E-07 1.2E-11 86.1 12.4 181 438-623 18-237 (282)
126 1a17_A Serine/threonine protei 98.6 9.3E-07 3.2E-11 77.6 14.6 126 495-622 16-145 (166)
127 3rjv_A Putative SEL1 repeat pr 98.6 2.8E-06 9.7E-11 78.2 18.1 172 404-591 5-199 (212)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.9E-06 6.6E-11 79.4 17.1 145 428-593 8-154 (213)
129 2c2l_A CHIP, carboxy terminus 98.6 1.2E-07 4.3E-12 91.7 8.7 191 425-623 3-199 (281)
130 1na0_A Designed protein CTPR3; 98.5 1.2E-06 4.3E-11 72.3 13.6 114 493-608 10-125 (125)
131 2lni_A Stress-induced-phosphop 98.5 9E-07 3.1E-11 74.3 12.5 113 494-609 18-133 (133)
132 4f3v_A ESX-1 secretion system 98.5 1.1E-06 3.7E-11 82.9 13.9 192 397-600 18-247 (282)
133 2vyi_A SGTA protein; chaperone 98.5 1.3E-06 4.5E-11 72.9 13.3 116 494-611 14-131 (131)
134 1p5q_A FKBP52, FK506-binding p 98.5 7.2E-07 2.5E-11 88.8 13.6 161 440-622 127-293 (336)
135 2e2e_A Formate-dependent nitri 98.5 4.4E-07 1.5E-11 80.9 10.5 119 503-623 21-144 (177)
136 3u3w_A Transcriptional activat 98.5 2.5E-05 8.6E-10 76.0 23.3 159 431-589 80-266 (293)
137 3gyz_A Chaperone protein IPGC; 98.5 1.2E-06 4.1E-11 75.2 12.0 104 488-594 31-138 (151)
138 4gcn_A Protein STI-1; structur 98.5 4.4E-07 1.5E-11 75.7 8.9 95 528-622 8-111 (127)
139 2qfc_A PLCR protein; TPR, HTH, 98.5 3.1E-06 1.1E-10 82.5 16.5 163 427-589 76-266 (293)
140 2kck_A TPR repeat; tetratricop 98.5 8.8E-07 3E-11 71.6 10.4 97 528-624 6-107 (112)
141 1hxi_A PEX5, peroxisome target 98.5 6.9E-07 2.4E-11 73.7 9.6 94 530-623 19-114 (121)
142 1elw_A TPR1-domain of HOP; HOP 98.5 3E-06 1E-10 69.1 13.5 95 528-622 4-100 (118)
143 3q49_B STIP1 homology and U bo 98.5 1.9E-06 6.5E-11 72.9 12.4 98 526-623 7-106 (137)
144 3gw4_A Uncharacterized protein 98.4 5.5E-06 1.9E-10 75.5 16.1 129 494-622 28-175 (203)
145 3sz7_A HSC70 cochaperone (SGT) 98.4 1.3E-06 4.3E-11 76.8 11.3 95 528-622 11-107 (164)
146 2lni_A Stress-induced-phosphop 98.4 3.2E-06 1.1E-10 70.8 13.4 97 527-623 15-113 (133)
147 2vgx_A Chaperone SYCD; alterna 98.4 7.1E-07 2.4E-11 76.7 9.0 106 488-596 16-125 (148)
148 1na0_A Designed protein CTPR3; 98.4 4.9E-06 1.7E-10 68.6 14.0 96 528-623 9-106 (125)
149 2hr2_A Hypothetical protein; a 98.4 1.4E-06 4.8E-11 73.9 9.6 91 532-622 15-130 (159)
150 3rkv_A Putative peptidylprolyl 98.4 2.3E-06 7.9E-11 74.9 11.5 63 560-622 63-125 (162)
151 2vyi_A SGTA protein; chaperone 98.4 5E-06 1.7E-10 69.3 13.2 97 527-623 11-109 (131)
152 2dba_A Smooth muscle cell asso 98.4 4.1E-06 1.4E-10 71.8 12.8 95 528-622 28-127 (148)
153 3gw4_A Uncharacterized protein 98.4 4.2E-06 1.5E-10 76.3 13.3 154 437-590 3-177 (203)
154 2fbn_A 70 kDa peptidylprolyl i 98.3 3.4E-06 1.2E-10 76.7 12.2 171 433-624 11-187 (198)
155 1elw_A TPR1-domain of HOP; HOP 98.3 1.2E-05 4.1E-10 65.4 13.3 109 494-604 6-116 (118)
156 2e2e_A Formate-dependent nitri 98.3 8.4E-06 2.9E-10 72.5 13.2 126 468-597 21-152 (177)
157 2xcb_A PCRH, regulatory protei 98.3 5.3E-06 1.8E-10 70.7 11.1 104 494-600 20-126 (142)
158 2dba_A Smooth muscle cell asso 98.3 1.3E-05 4.3E-10 68.6 13.6 109 494-605 30-144 (148)
159 1p5q_A FKBP52, FK506-binding p 98.3 5.6E-06 1.9E-10 82.3 12.6 96 528-623 147-259 (336)
160 2c2l_A CHIP, carboxy terminus 98.3 7.8E-06 2.7E-10 79.0 13.2 188 386-589 5-199 (281)
161 3sz7_A HSC70 cochaperone (SGT) 98.3 1.2E-05 4.2E-10 70.3 13.2 107 493-602 12-121 (164)
162 3upv_A Heat shock protein STI1 98.3 1E-05 3.6E-10 67.1 12.1 109 494-605 6-123 (126)
163 1elr_A TPR2A-domain of HOP; HO 98.3 9.7E-06 3.3E-10 67.5 12.0 95 528-622 4-107 (131)
164 2xev_A YBGF; tetratricopeptide 98.2 4.8E-06 1.6E-10 69.5 9.5 89 534-622 8-104 (129)
165 1a17_A Serine/threonine protei 98.2 1.9E-05 6.6E-10 69.0 13.8 127 459-589 15-146 (166)
166 3q7a_A Farnesyltransferase alp 98.2 0.00077 2.6E-08 65.8 26.0 223 359-595 63-338 (349)
167 2fbn_A 70 kDa peptidylprolyl i 98.2 1.9E-05 6.4E-10 71.7 14.1 118 503-622 15-150 (198)
168 3dss_A Geranylgeranyl transfer 98.2 0.00041 1.4E-08 67.3 24.0 228 361-603 40-318 (331)
169 3k9i_A BH0479 protein; putativ 98.2 1.4E-06 4.7E-11 71.4 5.5 82 541-622 3-89 (117)
170 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.1E-05 3.8E-10 83.9 13.7 161 440-622 248-414 (457)
171 1wao_1 Serine/threonine protei 98.1 7E-06 2.4E-10 85.8 10.8 116 500-618 14-134 (477)
172 3q49_B STIP1 homology and U bo 98.1 2E-05 6.7E-10 66.4 11.6 98 492-592 9-109 (137)
173 4b4t_Q 26S proteasome regulato 98.1 3.3E-05 1.1E-09 80.0 15.7 190 433-622 11-244 (434)
174 3q7a_A Farnesyltransferase alp 98.1 0.0002 6.7E-09 69.9 19.3 212 400-622 69-330 (349)
175 3ro3_A PINS homolog, G-protein 98.1 1.9E-05 6.6E-10 68.5 11.2 93 530-622 51-157 (164)
176 2xev_A YBGF; tetratricopeptide 98.1 4.8E-05 1.7E-09 63.1 13.0 102 498-602 8-118 (129)
177 1hxi_A PEX5, peroxisome target 98.1 1.5E-05 5E-10 65.6 9.4 97 495-594 20-119 (121)
178 2kck_A TPR repeat; tetratricop 98.1 3.1E-05 1.1E-09 62.2 11.2 100 493-594 7-111 (112)
179 1ihg_A Cyclophilin 40; ppiase 98.1 2.3E-05 7.9E-10 78.8 12.5 137 458-616 224-363 (370)
180 4gcn_A Protein STI-1; structur 98.0 4.1E-05 1.4E-09 63.5 11.4 58 460-519 11-69 (127)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.1E-05 7.1E-10 81.9 11.7 96 528-623 268-380 (457)
182 1elr_A TPR2A-domain of HOP; HO 98.0 2E-05 6.8E-10 65.5 9.5 109 495-606 7-124 (131)
183 1dce_A Protein (RAB geranylger 98.0 0.00019 6.4E-09 76.4 19.2 168 440-612 43-244 (567)
184 1wao_1 Serine/threonine protei 98.0 3.5E-05 1.2E-09 80.5 13.0 116 432-552 12-134 (477)
185 3n71_A Histone lysine methyltr 98.0 1.5E-05 5E-10 82.7 10.0 123 502-624 319-465 (490)
186 3dss_A Geranylgeranyl transfer 98.0 0.00098 3.4E-08 64.7 22.1 215 397-622 41-303 (331)
187 1ihg_A Cyclophilin 40; ppiase 98.0 3.1E-05 1.1E-09 77.8 11.7 64 559-622 272-335 (370)
188 3ro3_A PINS homolog, G-protein 98.0 4.1E-05 1.4E-09 66.4 11.1 97 494-590 51-159 (164)
189 4b4t_Q 26S proteasome regulato 98.0 9.6E-05 3.3E-09 76.5 15.5 159 464-622 11-203 (434)
190 3k9i_A BH0479 protein; putativ 98.0 1.1E-05 3.6E-10 66.0 6.4 93 505-597 3-98 (117)
191 3rkv_A Putative peptidylprolyl 98.0 1.5E-05 5E-10 69.7 7.7 123 457-605 11-143 (162)
192 2if4_A ATFKBP42; FKBP-like, al 98.0 1.7E-05 5.7E-10 78.9 8.8 147 457-623 179-328 (338)
193 3ma5_A Tetratricopeptide repea 98.0 4.5E-05 1.5E-09 60.1 9.5 64 559-622 6-69 (100)
194 2hr2_A Hypothetical protein; a 97.9 1.5E-05 5.2E-10 67.5 6.5 114 459-598 13-140 (159)
195 2if4_A ATFKBP42; FKBP-like, al 97.9 2.7E-05 9.1E-10 77.4 9.4 153 425-595 178-334 (338)
196 2l6j_A TPR repeat-containing p 97.9 2.2E-05 7.5E-10 63.2 7.0 93 527-619 3-103 (111)
197 1na3_A Designed protein CTPR2; 97.9 7.6E-05 2.6E-09 57.3 9.3 81 528-608 9-91 (91)
198 1zu2_A Mitochondrial import re 97.9 1.1E-05 3.8E-10 68.2 4.5 84 540-623 14-120 (158)
199 2kat_A Uncharacterized protein 97.8 5.3E-05 1.8E-09 61.5 8.3 77 546-622 3-81 (115)
200 3n71_A Histone lysine methyltr 97.8 3.5E-05 1.2E-09 79.9 7.8 113 537-667 318-448 (490)
201 2l6j_A TPR repeat-containing p 97.7 0.00039 1.3E-08 55.6 11.2 66 558-623 2-67 (111)
202 3qwp_A SET and MYND domain-con 97.7 6.4E-05 2.2E-09 76.8 7.4 116 535-668 294-427 (429)
203 3bee_A Putative YFRE protein; 97.6 0.0004 1.4E-08 53.4 9.4 69 557-625 3-74 (93)
204 1na3_A Designed protein CTPR2; 97.6 0.00051 1.7E-08 52.5 10.2 65 559-623 8-72 (91)
205 1klx_A Cysteine rich protein B 97.6 0.00093 3.2E-08 56.1 12.4 111 507-625 10-128 (138)
206 1zu2_A Mitochondrial import re 97.5 0.00011 3.7E-09 62.1 5.7 51 545-595 63-126 (158)
207 1dce_A Protein (RAB geranylger 97.5 0.0017 5.9E-08 68.9 15.4 148 471-623 43-221 (567)
208 3qww_A SET and MYND domain-con 97.4 0.0002 6.9E-09 72.9 7.1 82 541-622 311-410 (433)
209 1pc2_A Mitochondria fission pr 97.4 0.0011 3.7E-08 55.3 10.1 91 558-674 30-125 (152)
210 2kat_A Uncharacterized protein 97.3 0.0011 3.7E-08 53.5 9.1 80 511-593 4-86 (115)
211 3ly7_A Transcriptional activat 97.3 0.0059 2E-07 59.5 15.3 142 454-623 191-339 (372)
212 2kc7_A BFR218_protein; tetratr 97.2 0.0015 5.3E-08 50.8 8.6 63 535-597 7-72 (99)
213 3lvg_A Clathrin heavy chain 1; 97.1 4.9E-05 1.7E-09 75.1 -0.9 237 84-339 53-324 (624)
214 1klx_A Cysteine rich protein B 97.1 0.0082 2.8E-07 50.2 12.9 112 471-591 9-128 (138)
215 3qww_A SET and MYND domain-con 97.1 0.0018 6.2E-08 65.9 10.3 92 505-596 311-423 (433)
216 3ma5_A Tetratricopeptide repea 97.0 0.0026 9E-08 49.7 7.8 59 458-518 8-67 (100)
217 3qwp_A SET and MYND domain-con 96.9 0.0041 1.4E-07 63.4 11.1 96 502-597 297-413 (429)
218 3lvg_A Clathrin heavy chain 1; 96.9 0.0015 5.1E-08 64.8 7.3 391 17-448 81-534 (624)
219 2kc7_A BFR218_protein; tetratr 96.9 0.005 1.7E-07 47.8 9.3 51 501-554 9-61 (99)
220 3ly7_A Transcriptional activat 96.9 0.019 6.4E-07 56.0 14.6 112 488-624 190-307 (372)
221 1wy6_A Hypothetical protein ST 96.6 0.16 5.5E-06 40.6 15.0 141 467-626 17-157 (172)
222 3mkq_A Coatomer beta'-subunit; 96.5 0.3 1E-05 54.6 23.8 129 292-451 633-761 (814)
223 3u64_A Protein TP_0956; tetrat 96.5 0.0095 3.2E-07 55.5 9.0 83 544-626 179-272 (301)
224 1nzn_A CGI-135 protein, fissio 96.3 0.022 7.6E-07 45.6 9.1 88 558-671 33-125 (126)
225 2v5f_A Prolyl 4-hydroxylase su 96.2 0.031 1E-06 43.8 9.6 72 530-601 7-87 (104)
226 1y8m_A FIS1; mitochondria, unk 96.1 0.14 4.8E-06 41.7 12.7 93 557-675 36-132 (144)
227 3mkq_A Coatomer beta'-subunit; 96.0 0.1 3.5E-06 58.6 16.1 149 127-311 610-759 (814)
228 3mkq_B Coatomer subunit alpha; 95.9 0.39 1.3E-05 41.1 15.3 130 433-586 12-141 (177)
229 1qsa_A Protein (soluble lytic 95.8 2.4 8.1E-05 45.0 25.9 263 289-588 73-347 (618)
230 1pc2_A Mitochondria fission pr 95.8 0.045 1.5E-06 45.6 8.8 85 509-595 15-106 (152)
231 3bee_A Putative YFRE protein; 95.6 0.079 2.7E-06 40.3 9.1 69 526-594 4-77 (93)
232 3o48_A Mitochondria fission 1 95.4 0.096 3.3E-06 42.0 9.0 89 557-671 37-129 (134)
233 2v5f_A Prolyl 4-hydroxylase su 95.2 0.22 7.4E-06 38.8 10.7 64 559-622 4-74 (104)
234 3mkq_B Coatomer subunit alpha; 95.1 1.4 4.8E-05 37.7 16.8 100 331-453 17-116 (177)
235 4h7y_A Dual specificity protei 94.7 0.23 7.9E-06 40.8 9.3 54 572-625 72-125 (161)
236 4gns_B Protein CSD3, chitin bi 94.3 0.16 5.5E-06 54.9 10.0 55 567-621 344-398 (754)
237 3u64_A Protein TP_0956; tetrat 93.9 0.11 3.8E-06 48.4 6.8 104 509-621 180-296 (301)
238 2wpv_A GET4, UPF0363 protein Y 93.9 4.6 0.00016 38.3 20.2 144 359-521 62-217 (312)
239 1nzn_A CGI-135 protein, fissio 93.6 0.88 3E-05 36.4 10.7 71 526-596 33-110 (126)
240 1wy6_A Hypothetical protein ST 92.9 3 0.0001 33.5 12.6 48 396-452 18-65 (172)
241 4h7y_A Dual specificity protei 91.3 1.9 6.4E-05 35.5 9.9 38 454-492 10-53 (161)
242 3lpz_A GET4 (YOR164C homolog); 91.3 11 0.00036 36.1 22.2 142 360-520 65-215 (336)
243 4ady_A RPN2, 26S proteasome re 90.3 26 0.00088 38.9 31.5 260 297-569 383-670 (963)
244 1v54_E Cytochrome C oxidase po 89.5 1.4 4.9E-05 33.1 7.0 60 3-63 29-88 (109)
245 3txn_A 26S proteasome regulato 89.0 18 0.00062 35.7 17.0 161 428-589 21-210 (394)
246 1qsa_A Protein (soluble lytic 89.0 26 0.00088 37.1 35.8 141 21-166 9-151 (618)
247 2wpv_A GET4, UPF0363 protein Y 88.6 17 0.00057 34.5 20.0 114 188-312 35-158 (312)
248 3ffl_A Anaphase-promoting comp 88.1 2.2 7.4E-05 35.9 8.1 123 486-622 12-150 (167)
249 3ffl_A Anaphase-promoting comp 87.5 3.6 0.00012 34.5 9.2 28 528-555 122-149 (167)
250 2ff4_A Probable regulatory pro 87.1 1.8 6.1E-05 43.2 8.7 68 563-630 174-246 (388)
251 2p58_C Putative type III secre 86.2 8.9 0.0003 28.8 9.6 58 328-388 49-106 (116)
252 3ltm_A Alpha-REP4; protein eng 85.9 18 0.00061 31.9 16.8 17 53-69 32-48 (211)
253 4fhn_B Nucleoporin NUP120; pro 85.4 34 0.0011 39.7 19.3 143 389-545 816-988 (1139)
254 2uwj_G Type III export protein 85.2 8.2 0.00028 28.9 8.8 58 328-388 48-105 (115)
255 1v54_E Cytochrome C oxidase po 84.6 6.2 0.00021 29.8 8.0 62 233-296 26-87 (109)
256 1y8m_A FIS1; mitochondria, unk 83.5 17 0.00057 29.6 11.0 71 525-595 36-112 (144)
257 3ltj_A Alpharep-4; protein eng 83.5 22 0.00075 31.0 15.7 75 186-264 121-195 (201)
258 4gns_B Protein CSD3, chitin bi 83.0 9.1 0.00031 41.4 12.1 51 466-518 346-397 (754)
259 2y69_E Cytochrome C oxidase su 82.7 4.6 0.00016 32.3 7.0 58 4-62 73-130 (152)
260 4fhn_B Nucleoporin NUP120; pro 82.4 27 0.00091 40.5 16.7 65 561-625 900-969 (1139)
261 4b4t_P 26S proteasome regulato 81.6 47 0.0016 33.5 18.7 26 425-450 55-80 (445)
262 2ff4_A Probable regulatory pro 81.2 9.9 0.00034 37.7 11.1 68 461-530 175-247 (388)
263 3lpz_A GET4 (YOR164C homolog); 79.8 43 0.0015 32.0 23.1 182 62-280 20-215 (336)
264 2p58_C Putative type III secre 78.1 19 0.00067 27.0 9.0 57 33-91 21-77 (116)
265 2y69_E Cytochrome C oxidase su 76.4 14 0.00049 29.5 8.0 61 234-296 70-130 (152)
266 3ltj_A Alpharep-4; protein eng 75.8 39 0.0013 29.3 17.8 80 52-131 57-136 (201)
267 3o48_A Mitochondria fission 1 75.7 23 0.00078 28.4 9.2 34 562-595 80-113 (134)
268 4ady_A RPN2, 26S proteasome re 75.6 1.1E+02 0.0036 34.2 32.5 266 226-502 383-671 (963)
269 2uwj_G Type III export protein 75.2 19 0.00063 27.0 7.8 50 95-146 49-98 (115)
270 3ltm_A Alpha-REP4; protein eng 75.1 42 0.0014 29.3 17.1 155 16-179 30-184 (211)
271 1wdy_A 2-5A-dependent ribonucl 73.8 28 0.00094 32.1 11.6 19 61-79 43-61 (285)
272 1zbp_A Hypothetical protein VP 73.7 52 0.0018 30.2 12.3 49 468-518 8-57 (273)
273 4b4t_P 26S proteasome regulato 72.9 82 0.0028 31.7 23.8 95 460-554 140-244 (445)
274 1zbp_A Hypothetical protein VP 70.4 10 0.00035 34.8 6.9 84 536-626 5-90 (273)
275 3esl_A Checkpoint serine/threo 69.8 44 0.0015 29.1 10.4 78 573-675 92-171 (202)
276 2qx5_A Nucleoporin NIC96; mRNA 65.0 86 0.0029 33.4 13.7 82 356-454 300-384 (661)
277 1wdy_A 2-5A-dependent ribonucl 64.9 51 0.0017 30.2 11.4 20 92-111 43-62 (285)
278 4b4t_R RPN7, 26S proteasome re 63.4 29 0.00099 34.9 9.6 60 494-554 133-194 (429)
279 4b4t_R RPN7, 26S proteasome re 62.2 44 0.0015 33.6 10.6 95 427-521 132-237 (429)
280 4a1g_A Mitotic checkpoint seri 56.6 83 0.0028 25.9 9.5 49 579-627 84-134 (152)
281 1n11_A Ankyrin; clathrin, BAND 55.8 1.6E+02 0.0053 29.3 13.8 83 25-112 17-104 (437)
282 1k1a_A B-cell lymphoma 3-encod 55.3 64 0.0022 28.6 9.9 86 25-111 12-102 (241)
283 3b7b_A Euchromatic histone-lys 51.7 41 0.0014 30.0 7.8 80 26-110 15-99 (237)
284 2wvi_A Mitotic checkpoint seri 51.6 1.1E+02 0.0036 25.7 9.4 49 579-627 79-129 (164)
285 3hra_A Ankyrin repeat family p 49.4 84 0.0029 26.8 9.3 56 195-251 112-172 (201)
286 2nsz_A Programmed cell death p 48.0 67 0.0023 25.6 7.4 65 428-492 9-78 (129)
287 2fe3_A Peroxide operon regulat 45.7 56 0.0019 26.7 6.9 62 6-68 9-70 (145)
288 3kea_A K1L; tropism, ANK repea 45.0 1.3E+02 0.0045 27.7 10.4 184 25-218 34-224 (285)
289 3mv2_A Coatomer subunit alpha; 44.5 2.1E+02 0.0071 27.0 12.9 60 551-624 196-257 (325)
290 3esl_A Checkpoint serine/threo 42.9 1.7E+02 0.0057 25.5 10.4 56 471-527 93-149 (202)
291 3eu9_A Huntingtin-interacting 42.1 67 0.0023 28.4 7.7 20 60-79 45-64 (240)
292 3eu9_A Huntingtin-interacting 40.6 1.9E+02 0.0063 25.3 11.1 13 66-78 18-30 (240)
293 3kea_A K1L; tropism, ANK repea 38.9 1.4E+02 0.0049 27.5 9.6 183 59-254 33-225 (285)
294 2fu4_A Ferric uptake regulatio 38.8 77 0.0026 22.5 6.0 64 6-70 4-68 (83)
295 2ion_A PDCD4, programmed cell 38.5 65 0.0022 26.6 6.1 65 428-492 11-80 (152)
296 1s6c_A KV4 potassium channel-i 38.4 1.7E+02 0.0059 24.3 10.2 104 71-176 56-181 (183)
297 1n11_A Ankyrin; clathrin, BAND 37.6 3.1E+02 0.011 27.0 14.3 194 5-212 28-235 (437)
298 2nsz_A Programmed cell death p 37.0 1.3E+02 0.0044 24.0 7.5 62 324-385 12-78 (129)
299 2d2s_A Exocyst complex compone 36.9 1.1E+02 0.0036 27.6 7.7 87 464-554 25-117 (235)
300 3jxi_A Vanilloid receptor-rela 36.4 21 0.00071 32.7 3.1 54 26-79 9-71 (260)
301 1k1a_A B-cell lymphoma 3-encod 35.1 1.6E+02 0.0054 25.9 9.1 26 124-149 14-39 (241)
302 4gq2_M Nucleoporin NUP120; bet 34.3 2.7E+02 0.0092 31.3 12.2 86 498-589 816-926 (950)
303 1ug3_A EIF4GI, eukaryotic prot 33.9 2E+02 0.0069 27.5 9.8 26 292-317 15-40 (339)
304 2r9g_A AAA ATPase, central reg 33.9 2.3E+02 0.0079 24.5 9.8 61 355-416 16-84 (204)
305 3jxi_A Vanilloid receptor-rela 33.9 1.7E+02 0.0058 26.2 9.1 119 225-343 10-161 (260)
306 3aji_A 26S proteasome non-ATPa 33.6 1.8E+02 0.0061 25.4 9.1 14 65-78 14-27 (231)
307 2etb_A Transient receptor pote 32.4 61 0.0021 29.3 5.7 86 25-112 5-114 (256)
308 1ya0_A SMG-7 transcript varian 32.4 1.4E+02 0.0046 30.6 8.5 55 566-620 158-212 (497)
309 1oyz_A Hypothetical protein YI 32.4 2.9E+02 0.0098 25.1 23.2 19 424-442 204-222 (280)
310 2w57_A Ferric uptake regulatio 32.3 92 0.0031 25.6 6.1 64 6-70 4-68 (150)
311 2xig_A Ferric uptake regulatio 31.2 97 0.0033 25.4 6.1 21 60-80 32-52 (150)
312 3eyy_A Putative iron uptake re 31.1 77 0.0026 25.9 5.4 64 4-69 4-67 (145)
313 2d2s_A Exocyst complex compone 30.9 1.1E+02 0.0038 27.4 6.8 21 123-143 25-45 (235)
314 4g8k_A 2-5A-dependent ribonucl 30.7 3.4E+02 0.012 25.4 14.5 53 23-79 26-81 (337)
315 4ets_A Ferric uptake regulatio 30.7 1.3E+02 0.0044 25.1 6.8 57 44-101 23-85 (162)
316 3bge_A Predicted ATPase; struc 30.4 2.6E+02 0.0091 24.1 8.5 44 356-399 10-56 (201)
317 4b4t_S RPN3, 26S proteasome re 30.4 1.2E+02 0.004 31.1 7.5 61 494-554 233-296 (523)
318 4b4t_S RPN3, 26S proteasome re 30.2 78 0.0027 32.3 6.2 61 560-622 231-298 (523)
319 3ljn_A Hypothetical protein; a 29.7 2.3E+02 0.0078 27.1 9.7 46 96-141 61-106 (364)
320 4a1g_A Mitotic checkpoint seri 29.6 2.4E+02 0.008 23.2 8.6 33 459-491 103-135 (152)
321 3kae_A CDC27, possible protein 29.5 2.5E+02 0.0087 23.6 15.8 79 436-516 43-138 (242)
322 2ion_A PDCD4, programmed cell 28.9 1.2E+02 0.004 25.0 6.1 61 324-384 14-79 (152)
323 3ctd_A Putative ATPase, AAA fa 28.9 2.9E+02 0.01 24.1 9.8 65 352-416 34-106 (213)
324 3ygs_P Procaspase 9; apoptosis 28.8 60 0.0021 24.3 4.0 36 100-135 52-87 (97)
325 3ygs_P Procaspase 9; apoptosis 28.8 1.3E+02 0.0045 22.4 5.9 38 200-237 51-88 (97)
326 2jul_A Calsenilin; EF-hand, ca 28.6 3.2E+02 0.011 24.5 11.0 158 16-177 73-255 (256)
327 3ljn_A Hypothetical protein; a 28.4 3.9E+02 0.013 25.4 11.4 16 436-451 180-195 (364)
328 3kae_A CDC27, possible protein 27.8 2.7E+02 0.0094 23.4 9.0 80 540-622 45-142 (242)
329 4aez_C MAD3, mitotic spindle c 27.7 2.6E+02 0.0091 24.7 8.4 50 577-626 131-182 (223)
330 1mzb_A Ferric uptake regulatio 27.1 1.5E+02 0.0053 23.6 6.5 60 9-69 8-68 (136)
331 3l6a_A Eukaryotic translation 26.9 3.1E+02 0.011 26.5 9.7 27 58-84 16-42 (364)
332 1bpo_A Protein (clathrin); cla 25.6 5E+02 0.017 26.0 10.7 125 180-314 355-482 (494)
333 2zu6_B Programmed cell death p 25.5 3.2E+02 0.011 25.6 9.3 216 88-305 6-254 (307)
334 3hra_A Ankyrin repeat family p 25.2 2.8E+02 0.0095 23.3 8.6 15 196-210 79-93 (201)
335 3bqo_A Telomeric repeat-bindin 24.8 3.4E+02 0.012 23.4 8.1 27 567-593 124-150 (211)
336 2fu4_A Ferric uptake regulatio 23.8 1.8E+02 0.0062 20.5 5.8 60 141-201 7-67 (83)
337 2fe3_A Peroxide operon regulat 23.6 2.1E+02 0.0072 23.1 6.8 60 243-304 13-72 (145)
338 2rfa_A Transient receptor pote 22.8 3.7E+02 0.013 23.2 11.0 16 95-110 10-25 (232)
339 1oyz_A Hypothetical protein YI 22.6 4.3E+02 0.015 23.8 19.8 82 286-367 140-223 (280)
340 2rfa_A Transient receptor pote 22.0 1.7E+02 0.0058 25.6 6.6 26 158-183 158-183 (232)
341 3bu8_A Telomeric repeat-bindin 21.4 2.7E+02 0.0094 24.3 6.9 47 508-554 88-140 (235)
342 2p1h_A APAF-1, apoptotic prote 21.4 2.4E+02 0.0083 20.6 6.6 66 170-239 24-89 (94)
343 3i5p_A Nucleoporin NUP170; hel 21.4 6.7E+02 0.023 25.6 12.1 68 557-624 175-247 (525)
344 4gq2_M Nucleoporin NUP120; bet 20.9 5.9E+02 0.02 28.5 11.9 48 494-542 899-950 (950)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-40 Score=364.57 Aligned_cols=480 Identities=8% Similarity=-0.078 Sum_probs=314.0
Q ss_pred HHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHH
Q 005265 95 LLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVH 174 (705)
Q Consensus 95 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 174 (705)
+.+.|.+..+...+..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45567777777888888878888899999999999999999999999885 4578888888999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCC-------------------CcchHHHHHHHHHhcCChhH
Q 005265 175 ALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRER-------------------NIVSWNSLITCYEQNGPASD 235 (705)
Q Consensus 175 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 235 (705)
+.+... +++..+++.++.+|.+.|++++|.++|+++... ++.+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 887644 678889999999999999999999999965433 36778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCH-hHHHHHHHHHHccCChHHH--HHH-HHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005265 236 ALEVFVRMMASGIEPDE-VTLASVVSACASLAAFKEG--LQI-HARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVF 311 (705)
Q Consensus 236 A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 311 (705)
|+++|++|.+.+ |+. ..+..+...+...+..+.+ ..+ +..+...+ ..+...+++.++..|.+.|++++|.
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~--- 292 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED-AAFLRSLYMLKLNKTSHEDELRRAE--- 292 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG-HHHHHHHHHTTSCTTTTHHHHHHHH---
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch-HHHHHHHHHHHHHHHcCcchHHHHH---
Confidence 888888887743 433 3333333322222111111 011 22222222 2223334444455555555556565
Q ss_pred hhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCC--CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHH
Q 005265 312 DRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLE--RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFG 389 (705)
Q Consensus 312 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 389 (705)
++|+++.+ ++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++.
T Consensus 293 ----------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 343 (597)
T 2xpi_A 293 ----------------------------DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYP 343 (597)
T ss_dssp ----------------------------HHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHH
T ss_pred ----------------------------HHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHH
Confidence 55555544 566666667777777777777777777666544 23555666
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHH
Q 005265 390 NLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVG 466 (705)
Q Consensus 390 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 466 (705)
.++.++.+.|++++|..++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 416 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRH-------PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHS 416 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-------TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 66667777777777777776666554 3566677777777777777777777777654 2356677777777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDE 546 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 546 (705)
|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHH
Confidence 777777777777777776631 224556777777777777777777777776543 12346667777777777777777
Q ss_pred HHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 005265 547 AKTLIEAM-------PMQPD--AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVR 617 (705)
Q Consensus 547 A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 617 (705)
|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++++.+|+++.+|..++.+|.+.|++++|.+.+
T Consensus 494 A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 77777666 33565 5677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhC
Q 005265 618 KLMRKR 623 (705)
Q Consensus 618 ~~~~~~ 623 (705)
+++.+.
T Consensus 574 ~~~l~~ 579 (597)
T 2xpi_A 574 HESLAI 579 (597)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-38 Score=349.65 Aligned_cols=448 Identities=10% Similarity=0.002 Sum_probs=344.3
Q ss_pred HhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHH
Q 005265 127 AQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCAR 206 (705)
Q Consensus 127 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 206 (705)
.+.|.+..+...+..+ ..++...|+.++..|.+.|+++.|..+++.+.+. .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 3445555555555544 3357889999999999999999999999999864 567788999999999999999999
Q ss_pred HHHhccC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC---------------CCCCCHhHHHHHHHHHHccCChH
Q 005265 207 RVFDGMR--ERNIVSWNSLITCYEQNGPASDALEVFVRMMAS---------------GIEPDEVTLASVVSACASLAAFK 269 (705)
Q Consensus 207 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~ 269 (705)
.+|+.+. .++..+|+.++.+|.+.|++++|.++|+++... |..++..+|..++.++.+.|+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9999984 588899999999999999999999999853221 11223444444445555555555
Q ss_pred HHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHH-HHhcCC-
Q 005265 270 EGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLM-FTKMLE- 347 (705)
Q Consensus 270 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~- 347 (705)
+|...|+++.+.+ +.+...+..+...+...+..+.+. .. .+ +..+..
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~--~~---------------------------~l~~~~~~~~ 266 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDL--VL---------------------------KLNYSTYSKE 266 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHH--HH---------------------------HSCTHHHHGG
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHH--HH---------------------------hcCCcccccc
Confidence 5555555444432 222233333332222221111110 00 00 122211
Q ss_pred ---CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCC
Q 005265 348 ---RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEES 424 (705)
Q Consensus 348 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (705)
....+|+.++..|.+.|++++|..+|+++.+. .++..++..++.++.+.|++++|..+++.+.+.+. .
T Consensus 267 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~ 337 (597)
T 2xpi_A 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-------Y 337 (597)
T ss_dssp GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------T
T ss_pred hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-------c
Confidence 23345677788899999999999999999875 58999999999999999999999999999998874 5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 005265 425 DIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLC 500 (705)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 500 (705)
+..+++.++.+|.+.|++++|..+|+++. ..+..+|+.++..|.+.|++++|.++|+++.+ ..|+ ..+|..++.
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~ 415 (597)
T 2xpi_A 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST--MDPQFGPAWIGFAH 415 (597)
T ss_dssp CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 78889999999999999999999999885 34788999999999999999999999999998 4554 569999999
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-P-MQPDAVIWGSLLAACKVHRNIML 578 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~ 578 (705)
++.+.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ . .+.+..+|+.++..|.+.|++++
T Consensus 416 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 416 SFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999753 2346889999999999999999999999998 2 23478899999999999999999
Q ss_pred HHHHHHHHHhh------CCCC-CchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 579 GEYVAKKLLEI------EPSN-SGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 579 a~~~~~~~~~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
|.+.++++++. +|++ ..+|..++.+|.+.|++++|.+.++++.+.+
T Consensus 494 A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 99999999988 5554 5679999999999999999999999998765
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.2e-25 Score=230.31 Aligned_cols=368 Identities=13% Similarity=0.101 Sum_probs=267.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCCh
Q 005265 226 CYEQNGPASDALEVFVRMMASGIEPDE-VTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKL 304 (705)
Q Consensus 226 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 304 (705)
.+.+.|++++|++.++++.+. .|+. ..+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCH
Confidence 344555555555555555442 2332 233333444445555555555555555542 44455555555555555666
Q ss_pred HHHHHHHhhCC---CCCcccHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeehHHHHHHHHHHcCChHHHHHHHHHhhh
Q 005265 305 NEARCVFDRMP---IRNVVSETSMVSGYAKASSVKSARLMFTKMLE--R-NVVSWNALIAGYTQNGENEEALGLFRLLKR 378 (705)
Q Consensus 305 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 378 (705)
++|...|+++. ..+..+|..+...+.+.|++++|.+.|+++.. | +...+..+...+...|++++|...|+++.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66555555543 12233455555555555555555566665532 3 345567777888888999999999988887
Q ss_pred CCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CC
Q 005265 379 ESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ER 455 (705)
Q Consensus 379 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~ 455 (705)
.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|++.. ..
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 53 2345678888888888899999999998888876 4567888889999999999999999988765 33
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCM 534 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 534 (705)
+..+|..+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|++++|...|+.+.+. .+.+..++..+
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 311 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNL 311 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHH
Confidence 677888999999999999999999999998 4565 457888888999999999999999988764 24458888999
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 535 VDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
..++.+.|++++|.+.++++ ...| +..++..+...+.+.|++++|...++++++++|+++.+|..++.++...|+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999887 4445 577888899999999999999999999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.7e-25 Score=229.68 Aligned_cols=348 Identities=15% Similarity=0.118 Sum_probs=307.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHhcCCH
Q 005265 259 VSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMP---IRNVVSETSMVSGYAKASSV 335 (705)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 335 (705)
...+.+.|++++|...+..+.+.. +.+...+..+...+...|++++|...++... ..+..+|..+...|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 445677899999999999999874 5667788888899999999999999998765 34667899999999999999
Q ss_pred HHHHHHHHhcCC--C-CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcch-hhHHHHHHHHhhcccHHHHHHHHHHH
Q 005265 336 KSARLMFTKMLE--R-NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTH-YTFGNLLNACANLADLQLGRQAHTHV 411 (705)
Q Consensus 336 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~ 411 (705)
++|...|+++.. | +..+|..+...+.+.|++++|+..|+++.+. .|+. ..+..+...+...|++++|...+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999843 3 4557999999999999999999999999875 3554 45666777888899999999999999
Q ss_pred HHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 005265 412 VKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGE 488 (705)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 488 (705)
.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+ .
T Consensus 162 l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~ 232 (388)
T 1w3b_A 162 IETQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--L 232 (388)
T ss_dssp HHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--H
T ss_pred HHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h
Confidence 9876 46788999999999999999999999998863 3677899999999999999999999999998 5
Q ss_pred CCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHH
Q 005265 489 KPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-P-MQPDAVIWG 564 (705)
Q Consensus 489 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~ 564 (705)
.|+ ..++..+..++...|++++|...|+.+.+. .|+ ...|..++.+|.+.|++++|.+.|+++ . .+++..+|.
T Consensus 233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 309 (388)
T 1w3b_A 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 675 468889999999999999999999998753 454 788999999999999999999999998 2 345788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 565 SLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+...+...|++++|...++++++..|++...+..++.+|.+.|++++|.+.++++.+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999984
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1e-26 Score=243.91 Aligned_cols=184 Identities=13% Similarity=0.159 Sum_probs=174.9
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcc---------cHHHHHHHHHHHHHhCCCCCCC
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLA---------DLQLGRQAHTHVVKHGLRFLSG 421 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 421 (705)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|++.+ .++.|.++|++|.+.|+
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~----- 101 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV----- 101 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC-----
Confidence 4588899999999999999999999999999999999999999998654 47899999999999999
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 005265 422 EESDIFVGNSLIDMYMKCGSVEDGCRIFETMV----ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIG 497 (705)
Q Consensus 422 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 497 (705)
.||..+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus 102 -~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~ 180 (501)
T 4g26_A 102 -VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAA 180 (501)
T ss_dssp -CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 9999999999999999999999999999996 57999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 005265 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRA 541 (705)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 541 (705)
++.+|++.|++++|.+++++|... +..|+..+|+.++..|...
T Consensus 181 Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999655 9999999999999998764
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.6e-26 Score=242.40 Aligned_cols=217 Identities=12% Similarity=0.082 Sum_probs=173.2
Q ss_pred HHHHHHHHHhHhCCCCCChh-hHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhc
Q 005265 133 SEALGYFVKMHSENFALSEY-SFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDG 211 (705)
Q Consensus 133 ~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 211 (705)
..+..+.+++.+.++.+.+. .++.+|.+|++.|+++.|.++|++|.+.|+.||..+||+||.+|++.+....+
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34556667777777765544 58888999999999999999999999999999999999999999887764332
Q ss_pred cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHH
Q 005265 212 MRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLG 291 (705)
Q Consensus 212 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 291 (705)
.+.+..+.|.++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.| +.||..+|
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~ty 143 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG-IQPRLRSY 143 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccee
Confidence 2244567888999999999999999999999999999999999999999998888 99999999
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHH
Q 005265 292 NALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALG 371 (705)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 371 (705)
+++|.+|++.|++++|.++|++|. +.-..||..+|++||.+|++.|+.++|.+
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~---------------------------~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ 196 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMV---------------------------ESEVVPEEPELAALLKVSMDTKNADKVYK 196 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH---------------------------HTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHH---------------------------hcCCCCCHHHHHHHHHHHhhCCCHHHHHH
Confidence 999999999999999997766443 22256899999999999999999999999
Q ss_pred HHHHhhhCCCCcchhhHHHHHHHHhhcc
Q 005265 372 LFRLLKRESVCPTHYTFGNLLNACANLA 399 (705)
Q Consensus 372 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 399 (705)
+|++|.+.|..|+..||+.++..++..+
T Consensus 197 ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 197 TLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999987654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.8e-22 Score=213.66 Aligned_cols=422 Identities=10% Similarity=0.003 Sum_probs=300.8
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHhccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 005265 187 YMGSALIDMYGKCGRVSCARRVFDGMRE--RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACAS 264 (705)
Q Consensus 187 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 264 (705)
..+..+...+.+.|++++|...|+++.+ |+..+|..+..++.+.|++++|+..++++.+.+ +.+..++..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777653 666677777777777777777777777776643 2234566667777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC----CcccHHHH---HHHHHhcCCHHH
Q 005265 265 LAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIR----NVVSETSM---VSGYAKASSVKS 337 (705)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l---i~~~~~~~~~~~ 337 (705)
.|++++|...+..+.+.. +++......++..+.+......+.+.+..+... +...+... ............
T Consensus 86 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 777777777777777654 334444444444444433333333333221100 00000000 000001111111
Q ss_pred HHHHHHhcCC---------C-CeehHHHHHHHHHH---cCChHHHHHHHHHhhh-----CCCC--------cchhhHHHH
Q 005265 338 ARLMFTKMLE---------R-NVVSWNALIAGYTQ---NGENEEALGLFRLLKR-----ESVC--------PTHYTFGNL 391 (705)
Q Consensus 338 A~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~t~~~l 391 (705)
+...+..... + +...+......+.. .|++++|+..|+++.+ ..-. .+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1112211111 1 13344444454554 8999999999999987 3112 234567778
Q ss_pred HHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHH
Q 005265 392 LNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCA 468 (705)
Q Consensus 392 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 468 (705)
...+...|+++.|...+..+.+... . ..++..+..+|...|++++|...|+++.. .+...|..+...|.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~------~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP------R--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC------C--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc------c--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH
Confidence 8889999999999999999998864 3 88899999999999999999999998763 36778999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 005265 469 QNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEA 547 (705)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 547 (705)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|
T Consensus 316 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999984 454 4688888999999999999999999987652 23477899999999999999999
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHH
Q 005265 548 KTLIEAM----PMQPD----AVIWGSLLAACKV---HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRV 616 (705)
Q Consensus 548 ~~~~~~~----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 616 (705)
...++++ +..|+ ..+|..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999887 22222 4488899999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhC
Q 005265 617 RKLMRKR 623 (705)
Q Consensus 617 ~~~~~~~ 623 (705)
+++..+.
T Consensus 472 ~~~a~~~ 478 (514)
T 2gw1_A 472 FEESADL 478 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999864
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-22 Score=217.76 Aligned_cols=444 Identities=10% Similarity=-0.019 Sum_probs=286.8
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhh
Q 005265 118 SWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYG 197 (705)
Q Consensus 118 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 197 (705)
.|......+.+.|++++|+..|+++.+.. |+..++..+..++...|+++.|...++.+++.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34555666667777777777777776654 566667777777777777777777777776654 224556666667777
Q ss_pred cCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHH
Q 005265 198 KCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQI 274 (705)
Q Consensus 198 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 274 (705)
+.|++++|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 77777777776666542 223333334443333333333333333322222222222111100000000000000000
Q ss_pred HHHHHHcCCC---------CCChhHHHHHHHHHHh---cCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 005265 275 HARLMRCEKL---------RNDLVLGNALVDMYAK---CGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMF 342 (705)
Q Consensus 275 ~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 342 (705)
... ...... +.+...+..+...+.. .|++++|...|+++. +.+
T Consensus 165 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~------------------------~~~ 219 (514)
T 2gw1_A 165 ASF-FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA------------------------RLF 219 (514)
T ss_dssp HHH-HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH------------------------HHH
T ss_pred HHH-HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH------------------------HHh
Confidence 000 000000 1112222222222222 444555554443221 111
Q ss_pred HhcC----------CCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHH
Q 005265 343 TKML----------ERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVV 412 (705)
Q Consensus 343 ~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 412 (705)
+... ..+..+|..+...+...|++++|+..|+++.+.+ |+...+..+..++...|+++.|...+..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp HHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred hhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 1111 1134567788889999999999999999988765 347778888888999999999999999988
Q ss_pred HhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 005265 413 KHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEK 489 (705)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 489 (705)
+.. +.+..++..+..+|...|++++|...|+++. ..+...|..+...|...|++++|+..++++.+. .
T Consensus 298 ~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~ 368 (514)
T 2gw1_A 298 KLD-------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--F 368 (514)
T ss_dssp TTC-------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--S
T ss_pred hcC-------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--c
Confidence 776 4577889999999999999999999999875 346778999999999999999999999999884 4
Q ss_pred CC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-C
Q 005265 490 PD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGR---AGCLDEAKTLIEAM-PMQP-D 559 (705)
Q Consensus 490 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~ 559 (705)
|+ ..++..+...+...|++++|...++.+.+...-.++ ...+..+..+|.+ .|++++|.+.++++ ...| +
T Consensus 369 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 54 467888889999999999999999988765322333 3488999999999 99999999999987 3334 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 005265 560 AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600 (705)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 600 (705)
..++..+...+...|++++|...+++++++.|+++..+..+
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 77888999999999999999999999999999987766555
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.1e-21 Score=204.85 Aligned_cols=317 Identities=13% Similarity=0.062 Sum_probs=239.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeehHHHHHHHHHH
Q 005265 289 VLGNALVDMYAKCGKLNEARCVFDRMP---IRNVVSETSMVSGYAKASSVKSARLMFTKMLE---RNVVSWNALIAGYTQ 362 (705)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 362 (705)
..+..+...|.+.|++++|...|+++. ..+...|..+...+...|++++|...|+++.+ .+..+|..+...|..
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 334444444444444444444444332 12333344444444444444444455555422 345677788888888
Q ss_pred cCChHHHHHHHHHhhhCCCCcch----hhHHHH------------HHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcH
Q 005265 363 NGENEEALGLFRLLKRESVCPTH----YTFGNL------------LNACANLADLQLGRQAHTHVVKHGLRFLSGEESDI 426 (705)
Q Consensus 363 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 426 (705)
.|++++|...|+++.+.+ |+. ..+..+ ...+...|+++.|...+..+.+.. +.+.
T Consensus 107 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~ 177 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-------VWDA 177 (450)
T ss_dssp TTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred cCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCh
Confidence 888888888888887753 432 344433 344788999999999999999876 4688
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HHHH----
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVT-MIGV---- 498 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l---- 498 (705)
.++..++.+|.+.|++++|...|+++. ..+..+|..++..|...|++++|+..|+++.+ ..|+... +..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHH
Confidence 899999999999999999999999886 35788999999999999999999999999998 5666543 3333
Q ss_pred --------HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 005265 499 --------LCACSHAGLVEEGRKYFSSMSKEHGLAPL-----KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIW 563 (705)
Q Consensus 499 --------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 563 (705)
...|...|++++|..+|+.+.+. .|+ ...+..++.++.+.|++++|+..++++ ...| +..+|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 78899999999999999999764 454 457889999999999999999999987 4445 68899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH------------HHhcC-----ChhHHHHHHHH
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNM------------YAELG-----RWGEVVRVRKL 619 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 619 (705)
..+..+|...|++++|...++++++++|+++..+..++.+ |...| +.+++.+.+++
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999844 55555 55566776665
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=7.8e-21 Score=205.47 Aligned_cols=246 Identities=10% Similarity=0.007 Sum_probs=192.1
Q ss_pred CChHHHHHHHHHhhhCCCCcc--------hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHH
Q 005265 364 GENEEALGLFRLLKRESVCPT--------HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDM 435 (705)
Q Consensus 364 g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 435 (705)
|++++|+.+|+++.+.. |+ ..++..+...+...|+++.|...+..+.+.. |+...+..+...
T Consensus 216 ~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~l~~~ 285 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--------PTPNSYIFLALT 285 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CCchHHHHHHHH
Confidence 46778888888877643 33 1235555566777788888888888888765 347788888888
Q ss_pred HHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHH
Q 005265 436 YMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEG 511 (705)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 511 (705)
|...|++++|...|+++. ..+..+|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|++++|
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 888999999998888775 346778888888899999999999999998883 454 45788888888899999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----C----CCCCHHHHHHHHHHHHhc----------
Q 005265 512 RKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM----P----MQPDAVIWGSLLAACKVH---------- 573 (705)
Q Consensus 512 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~~~~~~~l~~~~~~~---------- 573 (705)
..+++.+.+.. +.+...+..+...|.+.|++++|.+.|+++ + .......+..+...+...
T Consensus 364 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 364 EAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 99999887642 233678888889999999999999998876 1 111223344555667777
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 574 RNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 574 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
|++++|...++++++.+|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 442 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998864
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=3.2e-20 Score=195.80 Aligned_cols=360 Identities=12% Similarity=0.039 Sum_probs=212.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHH
Q 005265 218 VSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDM 297 (705)
Q Consensus 218 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 297 (705)
..|..+...+.+.|++++|+.+|+++.... +.+..++..+...+...|++++|...+..+++.. +.+..++..+..+
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHH
Confidence 344555555555555555555555555421 2234455555555555555555555555555543 3344555555566
Q ss_pred HHhcCChHHHHHHHhhCCCCCc------ccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHH
Q 005265 298 YAKCGKLNEARCVFDRMPIRNV------VSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALG 371 (705)
Q Consensus 298 ~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 371 (705)
|.+.|++++|...|+++...++ ..+..++..+.. ..+..+...+...|++++|+.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666655554432211 222222222110 011222334555566666666
Q ss_pred HHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHc
Q 005265 372 LFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFET 451 (705)
Q Consensus 372 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (705)
.|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+..++..+..+|...|++++|...|++
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-------NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666655432 2244455555556666666666666666655543 34556666666666666666666666666
Q ss_pred cCC--C-ChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHhccCcHHHH
Q 005265 452 MVE--R-DWVSWNAM------------IVGCAQNGYGTEALGLFKKMLLCGEKPD-----HVTMIGVLCACSHAGLVEEG 511 (705)
Q Consensus 452 ~~~--~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a 511 (705)
+.. | +...+..+ ...+...|++++|+..|+++.+ ..|+ ...+..+..++.+.|++++|
T Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 542 2 33334333 7788888899999999988888 4565 23677778888888999999
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC--
Q 005265 512 RKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAA------------CKVHR-- 574 (705)
Q Consensus 512 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~g-- 574 (705)
...++.+.+. .| +...|..+..+|...|++++|...++++ ...|+ ...+..+..+ |...|
T Consensus 315 ~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 315 IRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 9988887654 34 4788888888899999999999988887 55664 4555555532 33334
Q ss_pred ---CHHHHHHHHHH-HHhhCCCCCc----------hHHHHHHHHHhcCChhH
Q 005265 575 ---NIMLGEYVAKK-LLEIEPSNSG----------PYVLLSNMYAELGRWGE 612 (705)
Q Consensus 575 ---~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 612 (705)
+.+++.+.+++ +++..|++.. .+..+..+|...|+.++
T Consensus 392 ~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 392 RNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 66778888887 6777887543 23445555555555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=3.6e-20 Score=200.23 Aligned_cols=427 Identities=10% Similarity=-0.016 Sum_probs=287.6
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 005265 117 CSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMY 196 (705)
Q Consensus 117 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 196 (705)
..|..+...+.+.|++++|+..|+++.+..+ .+..++..+..++...|+++.|...++.+++... .+...+..+..+|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence 3455566666666777777777776666532 2455666666666666666666666666666532 2455566666666
Q ss_pred hcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCCHhHHHHHHHHHHccCChHH
Q 005265 197 GKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMAS------GIEPDEVTLASVVSACASLAAFKE 270 (705)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~ 270 (705)
.+.|++++|.+.|+.+. .+....+..+..+...+....|...++++... ...|+.
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~------------------ 164 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN------------------ 164 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH------------------
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH------------------
Confidence 66666666666664332 11222222233344444445566666555432 111222
Q ss_pred HHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcc---cHHHHHHHHH--------hcCCHHHHH
Q 005265 271 GLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVV---SETSMVSGYA--------KASSVKSAR 339 (705)
Q Consensus 271 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~--------~~~~~~~A~ 339 (705)
..+..+....+.+.+...+......+.. ....+...+. ..|++++|.
T Consensus 165 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~ 222 (537)
T 3fp2_A 165 ----------------------TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222 (537)
T ss_dssp ----------------------HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred ----------------------hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2222333344444444444443332221 1111211111 124667777
Q ss_pred HHHHhcCCCCe----------ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHH
Q 005265 340 LMFTKMLERNV----------VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHT 409 (705)
Q Consensus 340 ~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 409 (705)
..|+++.+.++ .+|..+...+...|++++|+..|++..+. .|+...+..+...+...|+++.|...+.
T Consensus 223 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777755322 24666778888999999999999999885 4667788888889999999999999999
Q ss_pred HHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005265 410 HVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLC 486 (705)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 486 (705)
.+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|...++++.+.
T Consensus 301 ~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 301 KAVDLN-------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999887 4678889999999999999999999999875 336778999999999999999999999999984
Q ss_pred CCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhc----------CChHHHHHHH
Q 005265 487 GEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRA----------GCLDEAKTLI 551 (705)
Q Consensus 487 g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~ 551 (705)
.|+ ...+..+...+...|++++|...|+.+.+...-.++ ...+..+..+|.+. |++++|...|
T Consensus 374 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 374 --FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp --CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 455 458888899999999999999999988654311111 22345556778888 9999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 005265 552 EAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPY 597 (705)
Q Consensus 552 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 597 (705)
+++ ...| +..++..+...+...|++++|.+.+++++++.|++....
T Consensus 452 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 987 3344 678899999999999999999999999999999886643
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=6.4e-17 Score=179.08 Aligned_cols=519 Identities=12% Similarity=0.076 Sum_probs=363.7
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHHHhcCCh
Q 005265 22 FAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFI 101 (705)
Q Consensus 22 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 101 (705)
...|+..+=+.++..-.+..++.-...| ..++.++|+|...|..+++-.+. ....|..-=+.++.-||...++
T Consensus 842 ~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~------fL~~n~~yd~~~vgkyce~rDp 914 (1630)
T 1xi4_A 842 TDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPER------FLRENPYYDSRVVGKYCEKRDP 914 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHH------HhhccCcccHHHHHHHHHhcCc
Confidence 4555555555556555666666666655 56677777777777765543221 1122333333445566666666
Q ss_pred hHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Q 005265 102 DDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSR 181 (705)
Q Consensus 102 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 181 (705)
.-|.-.+++ ...-..||...-+++-++.--+.+- ++ -|...|..++.- +-+.-+++.++.....
T Consensus 915 ~la~iay~~-----g~~d~eli~vt~~n~l~k~~arylv---~r---~d~~lW~~vl~~-----~n~~RR~Lidqv~a~a 978 (1630)
T 1xi4_A 915 HLACVAYER-----GQCDLELINVCNENSLFKSLSRYLV---RR---KDPELWGSVLLE-----SNPYRRPLIDQVVQTA 978 (1630)
T ss_pred chHHHHhcc-----cCCcHHHHHHHhcchhHHHHHHHHH---Hh---cCHHHHHHHhcC-----CcHHHHHHHHHHHHhh
Confidence 666655553 2233456666666666654332221 11 255566666521 2233344555544433
Q ss_pred C--CCChhhHHHHHHHhhcCCChHHHHHHHhccCC-CC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh
Q 005265 182 Y--SSDVYMGSALIDMYGKCGRVSCARRVFDGMRE-RN-----IVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEV 253 (705)
Q Consensus 182 ~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 253 (705)
+ ..++.--...+..|...|.+.+|++++++..- ++ ...-+.++.+..+. +..+..+...+....
T Consensus 979 L~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~------- 1050 (1630)
T 1xi4_A 979 LSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY------- 1050 (1630)
T ss_pred cccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------
Confidence 2 22344446677888899999999999998762 22 24456677777776 556666666665421
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcC
Q 005265 254 TLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKAS 333 (705)
Q Consensus 254 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 333 (705)
....+...|...|.+++|..+|++.. ......+.+ +-..|++++|.++.++.. +..+|..+..++...|
T Consensus 1051 d~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1051 DAPDIANIAISNELFEEAFAIFRKFD------VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred cHHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Confidence 13336677788999999999998842 111222222 237789999999998774 4677889999999999
Q ss_pred CHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHH
Q 005265 334 SVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVK 413 (705)
Q Consensus 334 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 413 (705)
++++|.+.|.+. .|...|..++..+.+.|++++|++.|...++.. +++...+.+..+|++.++++....+. +
T Consensus 1120 ~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 999999999775 677888999999999999999999999877754 44444445888999999888644442 1
Q ss_pred hCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 005265 414 HGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV 493 (705)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 493 (705)
.++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. -+..
T Consensus 1192 ---------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1192 ---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 456677778999999999999999999985 58999999999999999999999977 3558
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAACK 571 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 571 (705)
+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.. +.+|. ...|.-+...+.
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 899999999999999999887653 3345667889999999999999999999877 55543 335544444444
Q ss_pred --hcCCHHHHHHHHHHHHhhCC-----CCCchHHHHHHHHHhcCChhHHHHH
Q 005265 572 --VHRNIMLGEYVAKKLLEIEP-----SNSGPYVLLSNMYAELGRWGEVVRV 616 (705)
Q Consensus 572 --~~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 616 (705)
+-++..++.+.|..-+.+.| .+...|..++-+|.+.|.|+.|...
T Consensus 1326 Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 45677888888887777666 6677799999999999999999843
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=6.2e-16 Score=171.30 Aligned_cols=283 Identities=12% Similarity=0.065 Sum_probs=227.1
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHH-HhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHH
Q 005265 294 LVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGY-AKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGL 372 (705)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 372 (705)
+...+...|.+++|..+|++.. .+...+..+ -..+++++|.++.++. .++.+|..+..++...|++++|+..
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4566777888888888888864 111212222 2778888888888876 3467889999999999999999999
Q ss_pred HHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 005265 373 FRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM 452 (705)
Q Consensus 373 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 452 (705)
|.+. -|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++.....
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--------~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--------RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--------ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9653 467788889999999999999999999888764 33334446999999999998644443
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 005265 453 VERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYT 532 (705)
Q Consensus 453 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 532 (705)
..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|.
T Consensus 1191 ~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWk 1254 (1630)
T 1xi4_A 1191 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWK 1254 (1630)
T ss_pred hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHH
Confidence 4557778888999999999999999999985 37899999999999999999999855 3568899
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc--CCh
Q 005265 533 CMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL--GRW 610 (705)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~ 610 (705)
.+..+|...|++..|....... ..++..+..++..|...|.+++|..+++.++.++|.+...|.-|+.+|++. ++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHH
Confidence 8999999999999999987753 345556678999999999999999999999999999999998898888775 455
Q ss_pred hHHHHHHH
Q 005265 611 GEVVRVRK 618 (705)
Q Consensus 611 ~~A~~~~~ 618 (705)
.++.+.|.
T Consensus 1333 mEhlk~f~ 1340 (1630)
T 1xi4_A 1333 REHLELFW 1340 (1630)
T ss_pred HHHHHHHH
Confidence 56666554
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=5.5e-18 Score=172.53 Aligned_cols=294 Identities=12% Similarity=0.038 Sum_probs=215.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChH
Q 005265 288 LVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENE 367 (705)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 367 (705)
...+..+...+...|++++|...|+++... .+.+..+|..+...+...|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------------------~p~~~~~~~~~a~~~~~~~~~~ 54 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----------------------------DPDNYIAYYRRATVFLAMGKSK 54 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------------------CcccHHHHHHHHHHHHHccCHH
Confidence 344555666666666666666555543210 1123445555556666666666
Q ss_pred HHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCC---CcHhHHHHH------------
Q 005265 368 EALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEE---SDIFVGNSL------------ 432 (705)
Q Consensus 368 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~l------------ 432 (705)
+|+..|+++.+.. +.+...+..+...+...|+++.|...+..+.+.. + .+...+..+
T Consensus 55 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~ 126 (359)
T 3ieg_A 55 AALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-------PSEQEEKEAESQLVKADEMQRLRSQ 126 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CcccChHHHHHHHHHHHHHHHHHHH
Confidence 6666666655432 1233455555555666666666666666555443 2 233333333
Q ss_pred HHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcH
Q 005265 433 IDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLV 508 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~ 508 (705)
...+...|++++|...|+++. ..+...|..+...+...|++++|+..++++.+. .| +..++..+...+...|++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 678899999999999999875 347788999999999999999999999999984 45 456888999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCC-hhHHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHH
Q 005265 509 EEGRKYFSSMSKEHGLAPL-KDHYT------------CMVDLLGRAGCLDEAKTLIEAM-PMQPD-A----VIWGSLLAA 569 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~ 569 (705)
++|...++.+.+. .|+ ...+. .+...+.+.|++++|...++++ ...|+ . ..+..+...
T Consensus 205 ~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 205 ELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 9999999998764 344 33333 2367799999999999999987 33443 3 234557778
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 570 CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 570 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+...|++++|...++++++.+|+++..+..++.+|...|++++|.+.++++.+
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999884
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1.6e-17 Score=168.96 Aligned_cols=205 Identities=11% Similarity=0.010 Sum_probs=171.4
Q ss_pred HHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHH
Q 005265 392 LNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCA 468 (705)
Q Consensus 392 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 468 (705)
...+...|+++.|...+..+.+.. +.+..++..+..+|...|++++|...++++.+ .+...|..+...+.
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVC-------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467778889999999999988876 46788999999999999999999999998763 47789999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChh-hHH------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h----hH
Q 005265 469 QNGYGTEALGLFKKMLLCGEKPDHV-TMI------------GVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-K----DH 530 (705)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~ 530 (705)
..|++++|...|++..+ ..|+.. .+. .+...+...|++++|...++.+.+. .|+ . ..
T Consensus 200 ~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ 274 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRS 274 (359)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHH
Confidence 99999999999999998 455543 222 2356688999999999999998765 344 2 33
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005265 531 YTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG 608 (705)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 608 (705)
+..+..+|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|++...+..+..++...+
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 556888999999999999999988 3345 78899999999999999999999999999999999888888777765443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=8.4e-17 Score=161.65 Aligned_cols=243 Identities=9% Similarity=-0.022 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcc-cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLA-DLQLGRQAHTHVVKHGLRFLSGEESDIFVGN 430 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (705)
.+..++..+...|++++|..+++++.+.. +.+...+..+...+...| +++.|...+..+.+.. +.+...+.
T Consensus 58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~ 129 (330)
T 3hym_B 58 CLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-------KTYGPAWI 129 (330)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-------TTCTHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-------CccHHHHH
Confidence 34444444555555555555555554432 122334444444444444 4555555555544433 23344455
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccC
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAG 506 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 506 (705)
.+..+|...|++++|...|+++.+ .+...+..+...|...|++++|.+.++++.+ ..|+ ...+..+...+...|
T Consensus 130 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~ 207 (330)
T 3hym_B 130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNG 207 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcc
Confidence 555555555555555555555431 2334444555555555555556555555555 2233 234555555555556
Q ss_pred cHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHH
Q 005265 507 LVEEGRKYFSSMSKEHG-------LAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~ 577 (705)
++++|...++.+.+... .......+..+..+|.+.|++++|...++++ ... .+..+|..+...+...|+++
T Consensus 208 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 287 (330)
T 3hym_B 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFE 287 (330)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHH
Confidence 66666655555543210 0122445555666666666666666666554 112 23455555666666666666
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005265 578 LGEYVAKKLLEIEPSNSGPYVLLSNMY 604 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~~~~~~~~l~~~~ 604 (705)
+|.+.++++++++|+++..+..++.++
T Consensus 288 ~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 288 NAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 666666666666666666666666655
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=7.7e-17 Score=161.92 Aligned_cols=262 Identities=12% Similarity=0.039 Sum_probs=229.0
Q ss_pred CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh
Q 005265 348 RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF 427 (705)
Q Consensus 348 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 427 (705)
.++..+..++..+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~ 91 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-------PSNPV 91 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTSTH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHH
Confidence 466678888899999999999999999998764 3345567778888899999999999999999876 46788
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHH
Q 005265 428 VGNSLIDMYMKCG-SVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCAC 502 (705)
Q Consensus 428 ~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 502 (705)
++..+...+...| ++++|...|++..+ .+...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHH
Confidence 8999999999999 99999999998763 36778999999999999999999999999984 454 45777788899
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHH
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PM----------QPDAVIWGSLLAAC 570 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~ 570 (705)
...|++++|...++.+.+ ..|+ ...+..+...|.+.|++++|...++++ .. ..+..+|..+...+
T Consensus 170 ~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 999999999999998864 3454 788999999999999999999999876 11 33467899999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999988763
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=1.5e-17 Score=170.09 Aligned_cols=275 Identities=12% Similarity=0.014 Sum_probs=213.5
Q ss_pred CCHHHHHH-HHHhcCC-------CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHH
Q 005265 333 SSVKSARL-MFTKMLE-------RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLG 404 (705)
Q Consensus 333 ~~~~~A~~-~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 404 (705)
|++++|.. .|++... .+...|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|+++.|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555555 5554422 134567778888888888888888888887754 33556777777788888888888
Q ss_pred HHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHH---------------HHHH
Q 005265 405 RQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER---DWVSWNA---------------MIVG 466 (705)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~ 466 (705)
...+..+.+.. +.+..++..+..+|...|++++|.+.|+++... +...+.. .+..
T Consensus 118 ~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 118 ISALRRCLELK-------PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred HHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 88888888776 357778888888888888888888888876532 2222221 1333
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPD---HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAG 542 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 542 (705)
+...|++++|+..|+++.+. .|+ ..++..+...+...|++++|...++.+.+. .| +...+..+..+|.+.|
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcC
Confidence 34889999999999999984 555 578889999999999999999999998764 34 4788999999999999
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----------CchHHHHHHHHHhcCC
Q 005265 543 CLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN-----------SGPYVLLSNMYAELGR 609 (705)
Q Consensus 543 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~ 609 (705)
++++|...|+++ ...| +..++..+...+...|++++|...+++++++.|++ ..+|..++.+|...|+
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999999987 3344 67889999999999999999999999999998877 7789999999999999
Q ss_pred hhHHHHHHHHH
Q 005265 610 WGEVVRVRKLM 620 (705)
Q Consensus 610 ~~~A~~~~~~~ 620 (705)
+++|..++++.
T Consensus 346 ~~~A~~~~~~~ 356 (368)
T 1fch_A 346 SDAYGAADARD 356 (368)
T ss_dssp GGGHHHHHTTC
T ss_pred hHhHHHhHHHH
Confidence 99999988643
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=2.6e-15 Score=159.58 Aligned_cols=365 Identities=12% Similarity=-0.005 Sum_probs=251.5
Q ss_pred ChhhHHHHHHHhhc----CCChHHHHHHHhccCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHhHH
Q 005265 185 DVYMGSALIDMYGK----CGRVSCARRVFDGMRE-RNIVSWNSLITCYEQ----NGPASDALEVFVRMMASGIEPDEVTL 255 (705)
Q Consensus 185 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 255 (705)
+...+..|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44444555555554 5666666666655432 344555556666665 566666666666666543 33444
Q ss_pred HHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCCCCcccHHHHHH
Q 005265 256 ASVVSACAS----LAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAK----CGKLNEARCVFDRMPIRNVVSETSMVS 327 (705)
Q Consensus 256 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~li~ 327 (705)
..+...+.. .+++++|...+++..+.+ +...+..|...|.. .++.++|.+.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~----------------- 173 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREW----------------- 173 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHH-----------------
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHH-----------------
Confidence 444455544 556666666666665543 34445555555554 4555555544
Q ss_pred HHHhcCCHHHHHHHHHhcCC-CCeehHHHHHHHHHH----cCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh----c
Q 005265 328 GYAKASSVKSARLMFTKMLE-RNVVSWNALIAGYTQ----NGENEEALGLFRLLKRESVCPTHYTFGNLLNACAN----L 398 (705)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~ 398 (705)
|++..+ .++..+..+...|.. .+++++|+.+|++..+.| +...+..+...+.. .
T Consensus 174 --------------~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 174 --------------YSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp --------------HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred --------------HHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 443322 355566677777776 778888888888877654 34455556566654 6
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHccCCC-ChhHHHHHHHHHHHc---
Q 005265 399 ADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMK----CGSVEDGCRIFETMVER-DWVSWNAMIVGCAQN--- 470 (705)
Q Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~--- 470 (705)
++++.|...+....+.+ +...+..+..+|.. .+++++|...|++..+. +...+..+...|...
T Consensus 237 ~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQG---------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp CCHHHHHHHHHHHHTTT---------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTT
T ss_pred CCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Confidence 78888888888877654 34566667777777 78999999999887644 677888888888887
Q ss_pred --CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----c
Q 005265 471 --GYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAG---LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGR----A 541 (705)
Q Consensus 471 --g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 541 (705)
+++++|+.+|++..+.| +...+..+...+...| ++++|.++|+...+. .+...+..|..+|.. .
T Consensus 308 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~ 380 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVK 380 (490)
T ss_dssp BCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSC
T ss_pred CcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence 89999999999998864 3456666666666656 889999999988653 467788889999988 8
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHh
Q 005265 542 GCLDEAKTLIEAMPMQPDAVIWGSLLAACKV----HRNIMLGEYVAKKLLEIEPS---NSGPYVLLSNMYAE 606 (705)
Q Consensus 542 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 606 (705)
+++++|.+.|++.-...+...+..|...|.. .+++++|...|+++.+.+|+ ++.....++.++..
T Consensus 381 ~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 381 KDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999987333467888888888887 89999999999999999854 66666777766554
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=2.5e-15 Score=161.51 Aligned_cols=407 Identities=10% Similarity=0.051 Sum_probs=266.2
Q ss_pred ChhhHHHHHHHhhcCCChHHHHHHHhccCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 005265 185 DVYMGSALIDMYGKCGRVSCARRVFDGMRE--R-NIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSA 261 (705)
Q Consensus 185 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 261 (705)
+...|..++. +.+.|+++.|..+|+++.+ | +...|..++..+.+.|++++|..+|+++... .|+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 4556666665 3556677777777766654 2 3345666677777777777777777777653 2555555544432
Q ss_pred H-HccCChHHHHH----HHHHHHHcCCCC-CChhHHHHHHHHHHh---------cCChHHHHHHHhhCCCCCcccHHHHH
Q 005265 262 C-ASLAAFKEGLQ----IHARLMRCEKLR-NDLVLGNALVDMYAK---------CGKLNEARCVFDRMPIRNVVSETSMV 326 (705)
Q Consensus 262 ~-~~~~~~~~a~~----~~~~~~~~~~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~li 326 (705)
. ...|+.+.|.+ +|+.++..-|.. ++...|...+....+ .|+++.|..+|++...........+.
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 23355544443 566655542233 345566666665554 67788888888776542111111111
Q ss_pred HHHHh---cCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHh------hhCC---CCcch--------h
Q 005265 327 SGYAK---ASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLL------KRES---VCPTH--------Y 386 (705)
Q Consensus 327 ~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~p~~--------~ 386 (705)
..|.. ......+..++. ...+++..|..+++.. .+.. +.|+. .
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHHhhchhHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 11111 000001111110 1234456666666542 2221 23331 2
Q ss_pred hHHHHHHHHhh----cccH----HHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHh-------cCCHH-------H
Q 005265 387 TFGNLLNACAN----LADL----QLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMK-------CGSVE-------D 444 (705)
Q Consensus 387 t~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~ 444 (705)
.|...+..... .++. +.+..+++.++... +.+..+|..++..+.+ .|+++ +
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 33333322211 1222 36677888888765 4678889988888876 79987 9
Q ss_pred HHHHHHccCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 445 GCRIFETMVE---R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH--VTMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 445 A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
|..+|++..+ | +...|..++..+.+.|++++|..+|+++++ +.|+. ..|...+..+.+.|++++|+++|+..
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999998764 3 678899999999999999999999999999 56764 47888888888999999999999988
Q ss_pred HHhcCCCCC-hhHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 519 SKEHGLAPL-KDHYTCMVDL-LGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 519 ~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.+. .|. ...|...+.. +...|+.++|..+|++. ...| +...|..++..+...|+.++|..+|+++++..|.++
T Consensus 383 l~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 383 RED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred Hhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 753 343 3334333322 34689999999999987 3344 578999999999999999999999999999877665
Q ss_pred c----hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 595 G----PYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 595 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
. .|...+......|+.+.+..+.+++.+.
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 6778888888999999999999998753
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=4e-17 Score=162.65 Aligned_cols=184 Identities=16% Similarity=0.232 Sum_probs=50.8
Q ss_pred hcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 005265 197 GKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHA 276 (705)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 276 (705)
.+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996664 9999999999999999999999653 677899999999999999999999888
Q ss_pred HHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHH
Q 005265 277 RLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNAL 356 (705)
Q Consensus 277 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 356 (705)
...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..+
T Consensus 86 ~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 86 MARKK---ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp --------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 77774 4557888999999999999999887775 355567777777777777777777777766 367777
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHH
Q 005265 357 IAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGR 405 (705)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 405 (705)
+.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH
Confidence 77777777777777777766 24566666666666666666663
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=5.9e-16 Score=154.25 Aligned_cols=222 Identities=14% Similarity=0.140 Sum_probs=69.9
Q ss_pred hcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHH
Q 005265 97 KWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHAL 176 (705)
Q Consensus 97 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 176 (705)
+.|++++|.+.++++..|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4566677777777775443 6777777777777777777777542 4666777777777777888888777776
Q ss_pred HHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHH
Q 005265 177 LSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLA 256 (705)
Q Consensus 177 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 256 (705)
.++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 6664 34567778888888888888887777753 66678888888888888888888888766 2466
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHH
Q 005265 257 SVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVK 336 (705)
Q Consensus 257 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 336 (705)
.+..++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~----------------------- 202 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH----------------------- 202 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----------------------
T ss_pred HHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----------------------
Confidence 6666666666666666666654 2455666666666666666666533322
Q ss_pred HHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhC
Q 005265 337 SARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRE 379 (705)
Q Consensus 337 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 379 (705)
+. ..+.....++..|.+.|++++|+.+++.....
T Consensus 203 --------L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 203 --------IV-VHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp --------TT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred --------HH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 11 22222334667777777777777777776643
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=1.6e-14 Score=153.56 Aligned_cols=352 Identities=12% Similarity=0.007 Sum_probs=266.4
Q ss_pred CCcchHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCC
Q 005265 215 RNIVSWNSLITCYEQ----NGPASDALEVFVRMMASGIEPDEVTLASVVSACAS----LAAFKEGLQIHARLMRCEKLRN 286 (705)
Q Consensus 215 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 286 (705)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .+++++|...|.+..+.+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 455556666666665 566666666666666543 34445555555555 566666666666665543
Q ss_pred ChhHHHHHHHHHHh----cCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCC-CCeehHHHHHHHHH
Q 005265 287 DLVLGNALVDMYAK----CGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLE-RNVVSWNALIAGYT 361 (705)
Q Consensus 287 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~ 361 (705)
+...+..|...|.. .+++++|. ..|++..+ .++..+..+...|.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~-------------------------------~~~~~a~~~~~~~a~~~Lg~~y~ 158 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESV-------------------------------KWFRLAAEQGRDSGQQSMGDAYF 158 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHH-------------------------------HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHH-------------------------------HHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444445555555 45555555 55554433 35567777888888
Q ss_pred H----cCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh----cccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHH
Q 005265 362 Q----NGENEEALGLFRLLKRESVCPTHYTFGNLLNACAN----LADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLI 433 (705)
Q Consensus 362 ~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 433 (705)
. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.+ +...+..+.
T Consensus 159 ~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg 226 (490)
T 2xm6_A 159 EGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---------DELGQLHLA 226 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHH
Confidence 7 789999999999998865 56677777777777 789999999999998864 456777888
Q ss_pred HHHHh----cCCHHHHHHHHHccCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 005265 434 DMYMK----CGSVEDGCRIFETMVE-RDWVSWNAMIVGCAQ----NGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSH 504 (705)
Q Consensus 434 ~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 504 (705)
.+|.. .+++++|..+|++..+ .+..++..+...|.. .++.++|+++|++..+.| +...+..+...+..
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDK 303 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence 88886 8899999999998764 467788888888888 899999999999998764 44566667777776
Q ss_pred c-----CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 005265 505 A-----GLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAG---CLDEAKTLIEAMPMQPDAVIWGSLLAACKV---- 572 (705)
Q Consensus 505 ~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~---- 572 (705)
. +++++|...|+...+. .+...+..+..+|.+.| +.++|.+.|++.-...+...+..+...|..
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~ 379 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGV 379 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred CCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 6 8999999999988653 24567888888888867 889999999988334678889999999888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 005265 573 HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE----LGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 573 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 625 (705)
.+++++|...++++.+.. ++.++..|+.+|.+ .+++++|.+.+++..+.+.
T Consensus 380 ~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 899999999999999864 56789999999999 8999999999999998764
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=9.1e-17 Score=164.07 Aligned_cols=259 Identities=9% Similarity=-0.044 Sum_probs=207.4
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhH
Q 005265 349 NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFV 428 (705)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 428 (705)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|...+..+.+.. +.+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------PNNLKA 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHH
Confidence 44568888888888888888888888888754 3456678888888888888888888888888876 456788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---h
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVERD-------------WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD---H 492 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~ 492 (705)
+..+..+|...|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+. .|+ .
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 213 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDP 213 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCH
Confidence 8889999999999999999998875321 123344578888999999999999999984 454 6
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005265 493 VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAAC 570 (705)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 570 (705)
.++..+...+...|++++|...|+.+.+.. +.+...|..+..+|.+.|++++|+..|+++ ...| +..+|..+...|
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 788899999999999999999999987641 334889999999999999999999999987 3445 578899999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCChhHHHHHHHH
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPS------------NSGPYVLLSNMYAELGRWGEVVRVRKL 619 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 619 (705)
...|++++|...+++++++.|+ +...|..++.++...|+.+.+.++.++
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999999999776 356789999999999999998887754
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=1e-14 Score=156.78 Aligned_cols=216 Identities=11% Similarity=0.031 Sum_probs=168.9
Q ss_pred HHHHHHHHHhhhCCCCcchhhHHHHHHHHhh-------cccHH-------HHHHHHHHHHHhCCCCCCCCCCcHhHHHHH
Q 005265 367 EEALGLFRLLKRESVCPTHYTFGNLLNACAN-------LADLQ-------LGRQAHTHVVKHGLRFLSGEESDIFVGNSL 432 (705)
Q Consensus 367 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (705)
.++..+|++.+... +.+...|......+.+ .|+++ .|..+++..++.-. +.+..++..+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~------p~~~~l~~~~ 327 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL------KKNMLLYFAY 327 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC------SSCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC------cccHHHHHHH
Confidence 36778888887652 2345566666666654 68876 88999998886322 4678999999
Q ss_pred HHHHHhcCCHHHHHHHHHccCC--C-Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHH-HhccC
Q 005265 433 IDMYMKCGSVEDGCRIFETMVE--R-DW-VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCA-CSHAG 506 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~-~~~~g 506 (705)
+..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|.++|++..+. .|+. ..+...... +...|
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcC
Confidence 9999999999999999998763 3 33 58999999999999999999999999984 4442 233322222 33589
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 005265 507 LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM----PMQPD--AVIWGSLLAACKVHRNIMLGE 580 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~ 580 (705)
++++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+.
T Consensus 406 ~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred ChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999988753 224788999999999999999999999987 22332 558888898899999999999
Q ss_pred HHHHHHHhhCCCC
Q 005265 581 YVAKKLLEIEPSN 593 (705)
Q Consensus 581 ~~~~~~~~~~p~~ 593 (705)
.+++++.+..|++
T Consensus 484 ~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 484 KVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHTHHH
T ss_pred HHHHHHHHHCchh
Confidence 9999999998853
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=2.8e-16 Score=160.60 Aligned_cols=255 Identities=13% Similarity=0.043 Sum_probs=206.2
Q ss_pred HHHcCChHHHHH-HHHHhhhCCC-Cc--chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHH
Q 005265 360 YTQNGENEEALG-LFRLLKRESV-CP--THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDM 435 (705)
Q Consensus 360 ~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 435 (705)
+...|++++|+. .|++...... .| +...+..+...+...|+++.|...+..+.+.. +.+..++..+..+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~ 107 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTT 107 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 445688999998 8887664321 11 35668888899999999999999999999876 4678899999999
Q ss_pred HHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HHH--------------
Q 005265 436 YMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVT-MIG-------------- 497 (705)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~-------------- 497 (705)
|...|++++|...|+++. ..+..+|..+...|...|++++|++.|+++... .|+... +..
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------
T ss_pred HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHH
Confidence 999999999999999875 347889999999999999999999999999984 454432 211
Q ss_pred -HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005265 498 -VLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHR 574 (705)
Q Consensus 498 -ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 574 (705)
.+..+...|++++|...++.+.+...-.++..++..+..+|.+.|++++|...++++ ...| +..+|..+...+...|
T Consensus 186 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 186 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence 233444899999999999999765322225788999999999999999999999987 3344 5789999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 575 NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 575 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
++++|...+++++++.|+++.++..++.+|.+.|++++|...++++.+.
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999764
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=2.8e-15 Score=146.64 Aligned_cols=271 Identities=9% Similarity=-0.040 Sum_probs=208.0
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCe----ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHH
Q 005265 328 GYAKASSVKSARLMFTKMLERNV----VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQL 403 (705)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 403 (705)
-....|++..|+..+++....++ .....+..+|...|+++.|+..++. .-.|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34455666666677666544332 2334567788888888888876644 135666778888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 005265 404 GRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKM 483 (705)
Q Consensus 404 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 483 (705)
|.+.++.+...+.. +.+...+..+...|...|++++|++.+++ ..+...+..++..|.+.|++++|.+.|+++
T Consensus 84 A~~~l~~ll~~~~~-----P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 84 IVAELDREMSRSVD-----VTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHSCCC-----CSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888876531 34667788888999999999999999998 568889999999999999999999999999
Q ss_pred HHCCCCCChhhH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 005265 484 LLCGEKPDHVTM---IGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP- 558 (705)
Q Consensus 484 ~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 558 (705)
.+. .|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++ ...|
T Consensus 157 ~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 157 QDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred Hhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 984 5765322 12233444569999999999999875 3456889999999999999999999999997 4455
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 005265 559 DAVIWGSLLAACKVHRNIML-GEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVR 617 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 617 (705)
+..++..++..+...|+.++ +.++++++++++|+++.+ .+...+.+.++++..-|
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 67789999999999999876 678999999999998753 34566666666665544
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=2.9e-15 Score=158.80 Aligned_cols=369 Identities=13% Similarity=0.018 Sum_probs=213.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHC-----C--CCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcC-----
Q 005265 216 NIVSWNSLITCYEQNGPASDALEVFVRMMAS-----G--IEP-DEVTLASVVSACASLAAFKEGLQIHARLMRCE----- 282 (705)
Q Consensus 216 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----- 282 (705)
.+..||.|...+...|++++|++.|++..+. + ..| ...+|..+...+...|++++|...++++.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888888888999999999998887541 1 122 34567777777778888888887777766521
Q ss_pred CCC-CChhHHHHHHHHHHhc--CChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHH
Q 005265 283 KLR-NDLVLGNALVDMYAKC--GKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAG 359 (705)
Q Consensus 283 ~~~-~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 359 (705)
... ....++..+..++.+. +++++|...|++..+- .+.++..+..+...
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~----------------------------~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK----------------------------KPKNPEFTSGLAIA 181 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------------------STTCHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh----------------------------CCCCHHHHHHHHHH
Confidence 011 1233444444444433 3456666555433210 11223333333332
Q ss_pred ---HHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh----cccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHH
Q 005265 360 ---YTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACAN----LADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSL 432 (705)
Q Consensus 360 ---~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (705)
+...++.++|+..+++..+.. +.+...+..+...+.. .++.+.|.+.+....... +.+..++..+
T Consensus 182 ~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~l 253 (472)
T 4g1t_A 182 SYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-------PGVTDVLRSA 253 (472)
T ss_dssp HHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-------SSCHHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-------ccHHHHHHHH
Confidence 234456666666666665542 1223333333333322 345566666666666655 3556666667
Q ss_pred HHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCC
Q 005265 433 IDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQ-------------------NGYGTEALGLFKKMLLCGEKP 490 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p 490 (705)
...|...|++++|...|++..+ .+..+|..+...|.. .+..+.|...|++..+ ..|
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~ 331 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--AND 331 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCC
Confidence 7777777777777777766542 244455555444432 2345778888888887 455
Q ss_pred Ch-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 005265 491 DH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKD----HYTCMVD-LLGRAGCLDEAKTLIEAM-PMQPDAVIW 563 (705)
Q Consensus 491 ~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 563 (705)
+. .++..+...+...|++++|...|++..+. .|+.. .+..+.. .+...|++++|+..|++. .+.|+...+
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~ 408 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 54 57888889999999999999999988653 34322 2333333 245779999999999887 566765443
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEE
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWI 634 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 634 (705)
... ...+.+++++.++.+|+++.+|..|+.+|...|++++|++.+++..+.+-......+|+
T Consensus 409 ~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 409 EKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 322 34556788888999999999999999999999999999999999988665433344443
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=8.2e-16 Score=156.94 Aligned_cols=231 Identities=13% Similarity=0.029 Sum_probs=197.5
Q ss_pred chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHH
Q 005265 384 THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSW 460 (705)
Q Consensus 384 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 460 (705)
+...+..+...+.+.|+++.|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++. ..+..+|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 136 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKAL 136 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44568888899999999999999999999887 4678999999999999999999999999876 3468899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hH----------HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TM----------IGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKD 529 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~----------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 529 (705)
..+...|...|++++|+..|+++.+ ..|+.. .+ ..+...+...|++++|..+++++.+...-.++..
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 214 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH
Confidence 9999999999999999999999998 445432 22 3347788999999999999999987632222588
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL 607 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 607 (705)
.+..+...|.+.|++++|++.|+++ ... .+..+|..+...+...|++++|...+++++++.|+++.++..++.+|.+.
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 9999999999999999999999987 333 46889999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 005265 608 GRWGEVVRVRKLMRKR 623 (705)
Q Consensus 608 g~~~~A~~~~~~~~~~ 623 (705)
|++++|.+.++++.+.
T Consensus 295 g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 295 GAYREAVSNFLTALSL 310 (365)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999864
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=1.4e-15 Score=148.89 Aligned_cols=246 Identities=11% Similarity=0.035 Sum_probs=203.3
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCcch--hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHH
Q 005265 357 IAGYTQNGENEEALGLFRLLKRESVCPTH--YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLID 434 (705)
Q Consensus 357 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 434 (705)
|.-....|++.+|+..++..... .|+. .....+..++...|+++.|...++. . - +|+...+..+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~------~~~~~a~~~la~ 73 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-S------APELQAVRMFAE 73 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-S------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-C------ChhHHHHHHHHH
Confidence 44566789999999999876553 3443 3556678899999999999876543 1 2 678889999999
Q ss_pred HHHhcCCHHHHHHHHHccC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHH
Q 005265 435 MYMKCGSVEDGCRIFETMV----ER-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVE 509 (705)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 509 (705)
.+...|+.++|++.++++. .| +...+..+...+...|++++|++.+++ ..+...+..+...+.+.|+++
T Consensus 74 ~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 74 YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999864 24 567788888999999999999999987 356678888999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005265 510 EGRKYFSSMSKEHGLAPLKDH---YTCMVDLLGRAGCLDEAKTLIEAM--PMQPDAVIWGSLLAACKVHRNIMLGEYVAK 584 (705)
Q Consensus 510 ~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 584 (705)
+|.+.++.+.+. .|+... ...++..+...|++++|..+|+++ ..+++...|+.+..++.+.|++++|+..++
T Consensus 148 ~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 148 LARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp HHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999765 466321 223445556679999999999998 234578899999999999999999999999
Q ss_pred HHHhhCCCCCchHHHHHHHHHhcCChhH-HHHHHHHHHhC
Q 005265 585 KLLEIEPSNSGPYVLLSNMYAELGRWGE-VVRVRKLMRKR 623 (705)
Q Consensus 585 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 623 (705)
++++.+|+++.++..++.++...|++++ +.++++++.+.
T Consensus 225 ~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 225 EALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999986 57899888753
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=1.1e-15 Score=153.33 Aligned_cols=260 Identities=10% Similarity=-0.074 Sum_probs=202.1
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhH
Q 005265 349 NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFV 428 (705)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 428 (705)
+...|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 91 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------PKDIAV 91 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------cCCHHH
Confidence 33456666777777777777877777777653 2345566667777777788888888887777765 356677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCC
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVER---DWVSWNAM--------------IV-GCAQNGYGTEALGLFKKMLLCGEKP 490 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p 490 (705)
+..+...|...|++++|.+.|+++... +...+..+ .. .+...|++++|...++++.+. .|
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~ 169 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NP 169 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--ST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CC
Confidence 777888888888888888888776522 22333332 22 367788999999999999884 34
Q ss_pred -ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005265 491 -DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLL 567 (705)
Q Consensus 491 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 567 (705)
+...+..+...+...|++++|...++.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ...| +..+|..+.
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 247 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4568888889999999999999999988764 1234788999999999999999999999987 3334 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCChhHHHHHHHHH
Q 005265 568 AACKVHRNIMLGEYVAKKLLEIEPS------------NSGPYVLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 568 ~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
..+...|++++|.+.++++++..|+ +...+..++.++.+.|++++|..++++.
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999998 6788999999999999999999998654
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=5e-14 Score=149.22 Aligned_cols=377 Identities=10% Similarity=-0.012 Sum_probs=181.9
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHhccC-----------C-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-C
Q 005265 187 YMGSALIDMYGKCGRVSCARRVFDGMR-----------E-RNIVSWNSLITCYEQNGPASDALEVFVRMMAS-----G-I 248 (705)
Q Consensus 187 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~ 248 (705)
..||.|...|...|+.++|++.|++.. . ....+|+.+..+|...|++++|...+++.... + .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 344444445555555555544444321 1 12234555555555566666665555554331 0 1
Q ss_pred CC-CHhHHHHHHHHHHc--cCChHHHHHHHHHHHHcCCCCCChhHHHHHHHH---HHhcCChHHHHHHHhhCC---CCCc
Q 005265 249 EP-DEVTLASVVSACAS--LAAFKEGLQIHARLMRCEKLRNDLVLGNALVDM---YAKCGKLNEARCVFDRMP---IRNV 319 (705)
Q Consensus 249 ~p-~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~---~~~~ 319 (705)
.+ ...++.....++.. .+++++|...|+++++.. |.+...+..+... +...++.++|++.|++.. ..+.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 11 12333333333332 235666666666666643 2333444443333 233455555555544332 1222
Q ss_pred ccHHHHHHHHH----hcCCHHHHHHHHHhcC---CCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc-hhhHHHH
Q 005265 320 VSETSMVSGYA----KASSVKSARLMFTKML---ERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPT-HYTFGNL 391 (705)
Q Consensus 320 ~~~~~li~~~~----~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 391 (705)
..+..+...+. ..++.++|.+.+++.. ..+...+..+...|...|++++|+..|++..+. .|+ ..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHH
Confidence 23333322222 2234455556665542 234556667777777777777777777777654 233 2333333
Q ss_pred HHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHH
Q 005265 392 LNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCA 468 (705)
Q Consensus 392 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 468 (705)
..++...+.... ... ...........+..+.|...|++.. ..+..+|..+...|.
T Consensus 288 g~~y~~~~~~~~---------~~~-------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 288 GCCYRAKVFQVM---------NLR-------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHH---------HC-------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhh---------hHH-------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Confidence 333221111000 000 0000011111233567777777664 346678899999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChh--hHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 005265 469 QNGYGTEALGLFKKMLLCGEKPDHV--TMIGVLC-ACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLD 545 (705)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 545 (705)
..|++++|++.|++.++....|... .+..+.. .....|+.++|+..|++..+ +.|+........ .
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~ 413 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------D 413 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------H
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------H
Confidence 9999999999999999854333221 2222222 34578999999999998764 566643332222 2
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 005265 546 EAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLS 601 (705)
Q Consensus 546 ~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 601 (705)
.+.++++.. .. +.+..+|..+...+...|++++|.+.|++++++.|.++.+..-+|
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 333344333 22 346778999999999999999999999999999998887665544
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=7.9e-17 Score=173.05 Aligned_cols=146 Identities=12% Similarity=0.098 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhcCC-------CCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHH
Q 005265 86 FTWNSIITGLLKWGFIDDASRLFASMP-------ERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSAL 158 (705)
Q Consensus 86 ~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 158 (705)
.+||+||.+||+.|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 589999999999999999999997753 5899999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCc-HHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC-----CCcchHHHHHHHHHhcC
Q 005265 159 SACAGSVDF-KMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE-----RNIVSWNSLITCYEQNG 231 (705)
Q Consensus 159 ~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g 231 (705)
.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.+++..+.- +.+.+...|.+.|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 78999999999999999999999999877776555555555444432 12344555666666655
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=1.5e-14 Score=135.14 Aligned_cols=194 Identities=14% Similarity=0.044 Sum_probs=160.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGV 498 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 498 (705)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 56778889999999999999999999998753 3678899999999999999999999999999 56765 578888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 005265 499 LCACSHA-----------GLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGS 565 (705)
Q Consensus 499 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 565 (705)
..++... |++++|+..++...+. .|+ ...+..+..+|...|++++|+..|++. ....+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8889999 9999999999988754 565 788999999999999999999999987 22278889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
+...+...|++++|...++++++++|+++..+..++.++...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999987643
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.63 E-value=7.4e-14 Score=139.78 Aligned_cols=229 Identities=14% Similarity=0.032 Sum_probs=195.7
Q ss_pred chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHH
Q 005265 384 THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSW 460 (705)
Q Consensus 384 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 460 (705)
+...+......+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...|+++. ..+..+|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 92 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH 92 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHH
Confidence 44566777888899999999999999999876 4678889999999999999999999999875 3467889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HHHH--------------HH-HHhccCcHHHHHHHHHHhHHhcCC
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVT-MIGV--------------LC-ACSHAGLVEEGRKYFSSMSKEHGL 524 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~ 524 (705)
..+...|...|++++|.+.++++.+ ..|+... +..+ .. .+...|++++|..+++.+.+..
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-- 168 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLL--SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-- 168 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--
Confidence 9999999999999999999999998 4555443 3222 22 3788999999999999987652
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 525 APLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 525 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|++...+..++.
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV 248 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 335888999999999999999999999987 3334 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 005265 603 MYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 603 ~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+|...|++++|.+.++++.+.
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=5.9e-16 Score=166.35 Aligned_cols=131 Identities=14% Similarity=0.106 Sum_probs=115.4
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMV-------ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTM 495 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 495 (705)
..-..+||+||++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4456789999999999999999999997753 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 496 IGVLCACSHAGL-VEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 496 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999997 57899999999776 99999999999998887776555555554333
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.4e-13 Score=132.52 Aligned_cols=217 Identities=12% Similarity=0.009 Sum_probs=182.1
Q ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC---C-------
Q 005265 387 TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER---D------- 456 (705)
Q Consensus 387 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~------- 456 (705)
.+..+...+...|+++.|...+..+.+.. .+..++..+..+|...|++++|...|++..+. +
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 44555566666777777777777766653 34678888999999999999999999987631 2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 005265 457 WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMV 535 (705)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 535 (705)
...|..+...|...|++++|+..|+++.+ +.|+. ..+...|++++|...++.+.+ ..|+ ...+..+.
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~ 146 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEG 146 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHH
Confidence 57889999999999999999999999998 45663 346667899999999998864 3454 77889999
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHH
Q 005265 536 DLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEV 613 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 613 (705)
..+.+.|++++|...++++ .. +.+..+|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999988 33 346788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 005265 614 VRVRKLMRKR 623 (705)
Q Consensus 614 ~~~~~~~~~~ 623 (705)
.+.+++..+.
T Consensus 227 ~~~~~~a~~~ 236 (258)
T 3uq3_A 227 LETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=8.5e-14 Score=135.54 Aligned_cols=241 Identities=10% Similarity=-0.079 Sum_probs=192.4
Q ss_pred HcCChHHHHHHHHHhhhCCC--C-cchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHh
Q 005265 362 QNGENEEALGLFRLLKRESV--C-PTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMK 438 (705)
Q Consensus 362 ~~g~~~~A~~~~~~m~~~g~--~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 438 (705)
..|++++|+..|+++.+... . .+..++..+...+...|+++.|...+..+.+.. +.+..++..+..+|..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHH
Confidence 35778889999988887632 1 245677778888888999999999999988876 4678889999999999
Q ss_pred cCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHH
Q 005265 439 CGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYF 515 (705)
Q Consensus 439 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (705)
.|++++|...|+++.+ .+...|..+...|...|++++|...|+++.+ ..|+.......+..+...|++++|...+
T Consensus 90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999998763 4678899999999999999999999999998 5677665556666667789999999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 516 SSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-----AVIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 516 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
+..... .+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.
T Consensus 168 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 168 KQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 887664 23344444 4777788888999999999887 33332 578888999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCChhHHHHHH
Q 005265 590 EPSNSGPYVLLSNMYAELGRWGEVVRVR 617 (705)
Q Consensus 590 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 617 (705)
+|++.. ..+.++...|++++|.+.+
T Consensus 245 ~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 NVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CCTTCH---HHHHHHHHHHHHHHC----
T ss_pred CchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 998754 4477888999999998876
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.2e-13 Score=133.06 Aligned_cols=237 Identities=10% Similarity=-0.031 Sum_probs=195.2
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCc----H
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESD----I 426 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~ 426 (705)
..|..+...+...|++++|+..|++..+.. ++...+..+..++...|+++.|...+..+.+..... .++ .
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~ 79 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM----RADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc----ccchHHHH
Confidence 357778888999999999999999988876 778888888999999999999999999888764310 111 6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcc
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHA 505 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 505 (705)
.++..+...|...|++++|...|++....+.. ...+...|++++|...++++.. ..|+. ..+..+...+...
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHh
Confidence 88899999999999999999999988642211 2456677889999999999998 55654 5788888899999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005265 506 GLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVA 583 (705)
Q Consensus 506 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 583 (705)
|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...++++ ...| +..+|..+...+...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999987642 334888999999999999999999999987 3344 5788999999999999999999999
Q ss_pred HHHHhhC------CCCCchHHHHHH
Q 005265 584 KKLLEIE------PSNSGPYVLLSN 602 (705)
Q Consensus 584 ~~~~~~~------p~~~~~~~~l~~ 602 (705)
++++++. |++...+..+..
T Consensus 231 ~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHhChhhcCCCchHHHHHHHHH
Confidence 9999998 777665555543
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=4.2e-13 Score=140.23 Aligned_cols=205 Identities=7% Similarity=-0.058 Sum_probs=130.5
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhc----CCHHHHHHHHHccCCCChhHHHHHHHH-H--HHcCC
Q 005265 400 DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKC----GSVEDGCRIFETMVERDWVSWNAMIVG-C--AQNGY 472 (705)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~ 472 (705)
+.++|...+....+.| +++...+..|..+|... +++++|...|++....+...+..+... | ...++
T Consensus 194 ~~~~A~~~~~~aa~~g-------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRG-------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp HHHHHHHHHHHHHHTT-------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCC
T ss_pred cHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Confidence 4444444444444444 24444445555555444 677788888777663366677777666 3 45778
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC-----cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCC
Q 005265 473 GTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAG-----LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGR----AGC 543 (705)
Q Consensus 473 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 543 (705)
+++|+++|++..+.| +...+..+...|. .| ++++|..+|+... .-+...+..|..+|.. ..+
T Consensus 267 ~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcC
Confidence 888888888888765 4555555655555 44 8888888888653 3356777777777766 348
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH--hcCChhHHHHHH
Q 005265 544 LDEAKTLIEAMPMQPDAVIWGSLLAACKV----HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA--ELGRWGEVVRVR 617 (705)
Q Consensus 544 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~ 617 (705)
.++|...|++.-...+......|...|.. ..+.++|...|+++.+..+.. ....+..+.. ..++..+|.++.
T Consensus 338 ~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~ 415 (452)
T 3e4b_A 338 PQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLV 415 (452)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88899988887323344455556665553 458899999999988876543 2334444432 234666777777
Q ss_pred HHHHh
Q 005265 618 KLMRK 622 (705)
Q Consensus 618 ~~~~~ 622 (705)
++.++
T Consensus 416 ~~~~~ 420 (452)
T 3e4b_A 416 QQELA 420 (452)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=4.5e-13 Score=130.17 Aligned_cols=175 Identities=11% Similarity=-0.003 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhc
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSH 504 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~ 504 (705)
+..+...|...|++++|...|++.. ..+...|..+...|...|++++|+..|++.++ ..|+. ..+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHH
Confidence 3444444444444444444444432 12334444444444445555555555444444 23332 223333312223
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHH
Q 005265 505 AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGC---LDEAKTLIEAM----PMQPD------AVIWGSLLAAC 570 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~ 570 (705)
.+++++|.+.|+.+.+. .|+ ...+..+..++...|+ +++|...++++ ...|+ ..+|..+...+
T Consensus 155 ~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp TTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 33555555555555432 232 4444445555555554 44454444443 11122 24667777788
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG 608 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 608 (705)
...|++++|.+.++++++++|+++.+...+..+....+
T Consensus 232 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 88999999999999999999999887777766655443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=1e-12 Score=132.81 Aligned_cols=244 Identities=10% Similarity=0.052 Sum_probs=198.1
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhccc-HHHHHHHHHHHHHhCCCCCCCCCCcHhHH
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLAD-LQLGRQAHTHVVKHGLRFLSGEESDIFVG 429 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (705)
..|+.+...+...|++++|+..|++.++.. +-+...|..+..++...|+ +++|...++.+++.. +.+..+|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------P~~~~a~ 169 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------PKNYQVW 169 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-------CCCHHHH
Confidence 467778888889999999999999988753 2245667778888888886 999999999999887 4688899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhc-
Q 005265 430 NSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSH- 504 (705)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~- 504 (705)
..+..++...|++++|+..|+++. ..+...|..+..++...|++++|+..|+++++ +.|+. ..|..+..++..
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999886 34778899999999999999999999999998 56654 578888888888
Q ss_pred cCcHHHH-----HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-
Q 005265 505 AGLVEEG-----RKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAG--CLDEAKTLIEAMPMQP-DAVIWGSLLAACKVHR- 574 (705)
Q Consensus 505 ~g~~~~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g- 574 (705)
.|..++| +..++...+ +.|+ ...|..+..+|.+.| ++++|++.++++...| +...+..+...+...|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhc
Confidence 5665677 477887764 3565 778888899999888 6899999888875455 5677888888887764
Q ss_pred --------CHHHHHHHHHHH-HhhCCCCCchHHHHHHHHHhc
Q 005265 575 --------NIMLGEYVAKKL-LEIEPSNSGPYVLLSNMYAEL 607 (705)
Q Consensus 575 --------~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 607 (705)
..++|.++++++ ++++|.....|..++..+...
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258999999999 899999988888887766543
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=1.8e-12 Score=124.25 Aligned_cols=196 Identities=10% Similarity=-0.046 Sum_probs=173.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCA 501 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~ 501 (705)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|.+.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 5778889999999999999999999875 346788999999999999999999999999984 44 45688888899
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIML 578 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 578 (705)
+...|++++|.++++.+.+ .+..|+ ...+..+..+|.+.|++++|.+.++++ ...| +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998875 234564 778889999999999999999999987 3334 57888999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 579 GEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 579 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
|...++++++..|++...+..++.++...|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999998643
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=2.9e-12 Score=120.23 Aligned_cols=198 Identities=13% Similarity=0.044 Sum_probs=174.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGV 498 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 498 (705)
+.+..++..+...+...|++++|...|+++. ..+...|..+...|...|++++|.+.++++.+. .| +..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 4567888999999999999999999999875 346788999999999999999999999999984 45 45688888
Q ss_pred HHHHhcc-CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005265 499 LCACSHA-GLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHR 574 (705)
Q Consensus 499 l~~~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 574 (705)
...+... |++++|...++.+.+ .+..|+ ...+..+..+|.+.|++++|...++++ ...| +...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 9999999 999999999999876 234454 778899999999999999999999987 3334 5788899999999999
Q ss_pred CHHHHHHHHHHHHhhCC-CCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 575 NIMLGEYVAKKLLEIEP-SNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 575 ~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
++++|...++++++..| ++...+..++.++...|+.++|..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999999 99898999999999999999999999998753
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=2.6e-12 Score=134.19 Aligned_cols=342 Identities=10% Similarity=-0.022 Sum_probs=219.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCCh---HHHHHHHhhCCCCCcccHHHHHHHHHhcC--
Q 005265 259 VSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKL---NEARCVFDRMPIRNVVSETSMVSGYAKAS-- 333 (705)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-- 333 (705)
...+.+.|++++|..+|..+.+.+ +...+..|..+|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 334455566677777776666654 222333455555556666 67777777666555556666666444444
Q ss_pred ---CHHHHHHHHHhcCCC-CeehHHHHHHHHHHcCChH---HHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHH
Q 005265 334 ---SVKSARLMFTKMLER-NVVSWNALIAGYTQNGENE---EALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQ 406 (705)
Q Consensus 334 ---~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 406 (705)
+.++|...|++...+ ++..+..|...|...+..+ ++...+......| +......+...+...+.++.+..
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 667777888777543 4557888888888766543 3455555555444 33445555666666664433333
Q ss_pred HHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHccCCC---ChhHHHHHHHHHHHc----CChHHH
Q 005265 407 AHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCG---SVEDGCRIFETMVER---DWVSWNAMIVGCAQN----GYGTEA 476 (705)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A 476 (705)
....+.+... ..++..+..|..+|.+.| +.++|++.|++..+. +...+..+...|... +++++|
T Consensus 163 ~a~~~~~~a~------~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 163 DVERICKAAL------NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp HHHHHHHHHT------TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred HHHHHHHHHH------cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 3222222222 234448889999999999 999999999987643 444446777777554 699999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-----ChHHHH
Q 005265 477 LGLFKKMLLCGEKPDHVTMIGVLCA-C--SHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAG-----CLDEAK 548 (705)
Q Consensus 477 ~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~ 548 (705)
+++|++.. .| +...+..+... + ...+++++|..+|+...+. | +...+..|..+|. .| ++++|.
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 99999987 32 33455555555 3 5689999999999988653 3 6777888888887 55 999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCChhHHHHHHHHH
Q 005265 549 TLIEAMPMQPDAVIWGSLLAACKV----HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE----LGRWGEVVRVRKLM 620 (705)
Q Consensus 549 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 620 (705)
+.|++.- ..+...+..|...|.. ..++++|...|+++.+. .++.....|+.+|.. ..+.++|..++++.
T Consensus 308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 9999998 6678888888877765 34999999999998874 456778999999985 46899999999999
Q ss_pred HhCCC
Q 005265 621 RKRGV 625 (705)
Q Consensus 621 ~~~~~ 625 (705)
.+.|.
T Consensus 385 ~~~g~ 389 (452)
T 3e4b_A 385 KAQDT 389 (452)
T ss_dssp HTTCC
T ss_pred HHCCC
Confidence 98775
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=1e-11 Score=120.59 Aligned_cols=222 Identities=11% Similarity=-0.032 Sum_probs=177.4
Q ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHccCC-CChhHH
Q 005265 386 YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMK----CGSVEDGCRIFETMVE-RDWVSW 460 (705)
Q Consensus 386 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~ 460 (705)
.++..+...+...+++++|...+....+. .+...+..+...|.. .+++++|...|++..+ .+..++
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 77 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGC 77 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34444555556666666666666666652 344567778888888 8999999999988764 367788
Q ss_pred HHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 005265 461 NAMIVGCAQ----NGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSH----AGLVEEGRKYFSSMSKEHGLAPLKDHYT 532 (705)
Q Consensus 461 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 532 (705)
..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+. + +...+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHH
Confidence 888888988 999999999999998864 66778888888888 89999999999988653 2 566777
Q ss_pred HHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005265 533 CMVDLLGR----AGCLDEAKTLIEAMPMQPDAVIWGSLLAACKV----HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMY 604 (705)
Q Consensus 533 ~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 604 (705)
.+...|.+ .+++++|.+.|++.-...+...+..+...+.. .+++++|...++++++..| +..+..++.+|
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~ 228 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 88888888 89999999999887323467788888888888 9999999999999999876 56789999999
Q ss_pred Hh----cCChhHHHHHHHHHHhCCC
Q 005265 605 AE----LGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 605 ~~----~g~~~~A~~~~~~~~~~~~ 625 (705)
.. .|++++|.+.+++..+.+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCC
Confidence 99 9999999999999987664
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.48 E-value=2.9e-12 Score=119.47 Aligned_cols=194 Identities=15% Similarity=0.012 Sum_probs=132.6
Q ss_pred CCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh
Q 005265 348 RNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF 427 (705)
Q Consensus 348 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 427 (705)
++...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~~ 74 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-------PRYLG 74 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHH
Confidence 455677788888888899999999988888753 3355677777888888899999999998888876 46777
Q ss_pred HHHHHHHHHHhc-----------CCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 005265 428 VGNSLIDMYMKC-----------GSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV 493 (705)
Q Consensus 428 ~~~~li~~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 493 (705)
.+..+..+|.+. |++++|+..|++..+ .+...|..+...|...|++++|+..|++.++.. .+..
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~ 152 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPE 152 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchH
Confidence 888888888888 777777777776642 255667777777777777777777777777754 5556
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
.+..+..++...|++++|+..|+.+.+. .|+ ...+..+..++.+.|++++|++.|++.
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6677777777777777777777766543 343 566666777777777777777766654
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=2.2e-12 Score=130.34 Aligned_cols=222 Identities=9% Similarity=0.085 Sum_probs=191.9
Q ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCC-HHHHHHHHHccCC---CChhHHH
Q 005265 386 YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGS-VEDGCRIFETMVE---RDWVSWN 461 (705)
Q Consensus 386 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~ 461 (705)
..+..+...+...|+++.|...+..+++.. +.+..+|+.+..++...|+ +++|+..|+++.. .+...|.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 456666777888999999999999999987 4688999999999999997 9999999999863 4778999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHH
Q 005265 462 AMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLG 539 (705)
Q Consensus 462 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 539 (705)
.+...+...|++++|+..|+++++ +.|+. ..|..+..++...|++++|+..++++++. .|+ ...|+.+..+|.
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 999999999999999999999999 66755 58899999999999999999999999764 565 889999999999
Q ss_pred h-cCChHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-
Q 005265 540 R-AGCLDEA-----KTLIEAM-PMQP-DAVIWGSLLAACKVHR--NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG- 608 (705)
Q Consensus 540 ~-~g~~~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 608 (705)
+ .|..++| ++.|++. .+.| +...|+.+...+...| ++++|.+.++++ +.+|+++.++..++++|.+.|
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhc
Confidence 9 6665777 4777766 4455 5778999888888888 689999999998 889999999999999999985
Q ss_pred --------ChhHHHHHHHHH
Q 005265 609 --------RWGEVVRVRKLM 620 (705)
Q Consensus 609 --------~~~~A~~~~~~~ 620 (705)
.+++|.++++++
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHH
Confidence 358999999998
No 50
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=7.1e-13 Score=137.48 Aligned_cols=268 Identities=11% Similarity=0.030 Sum_probs=200.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcch-----hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKRESVCPTH-----YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF 427 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 427 (705)
+..+...+...|++++|+..|++..+.+ |+. ..+..+...+...|+++.|...+..+.+..... ...+....
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~ 127 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM-NDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cCchHHHH
Confidence 4455667778888888888888887753 322 356677777788888888888887776541100 00023457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCC---------ChhHHHHHHHHHHHcCC-----------------hHHHHHHHH
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVER---------DWVSWNAMIVGCAQNGY-----------------GTEALGLFK 481 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 481 (705)
++..+...|...|++++|...|++.... ...+|..+...|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888889999999999999998876421 24478888889999999 999999988
Q ss_pred HHHHC----CCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHH
Q 005265 482 KMLLC----GEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIE 552 (705)
Q Consensus 482 ~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (705)
+..+. +-.|.. .++..+...+...|++++|..++++..+...-.++ ...+..+..+|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 87652 112222 36778888899999999999999988654211112 3378888999999999999999998
Q ss_pred hC-CC---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCChhHHHHHHH
Q 005265 553 AM-PM---QP----DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN------SGPYVLLSNMYAELGRWGEVVRVRK 618 (705)
Q Consensus 553 ~~-~~---~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 618 (705)
+. .. .. ...++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 76 11 11 24577888888999999999999999999874432 3378899999999999999999999
Q ss_pred HHHhC
Q 005265 619 LMRKR 623 (705)
Q Consensus 619 ~~~~~ 623 (705)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=3.5e-12 Score=123.81 Aligned_cols=223 Identities=8% Similarity=-0.050 Sum_probs=174.9
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--CC----hhHHHH
Q 005265 389 GNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--RD----WVSWNA 462 (705)
Q Consensus 389 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~ 462 (705)
......+...|+++.|...+..+.+.. +.+..++..+..+|...|++++|...|++..+ ++ ..+|..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 334445556666666666666666554 34556777888888899999999988887754 22 234889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 005265 463 MIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGR 540 (705)
Q Consensus 463 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 540 (705)
+...+...|++++|++.|++..+ ..|+. .++..+...+...|++++|...++...+ ..|+ ...+..+...+..
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVD--RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999998 44544 6888999999999999999999997764 4555 7777778734444
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhC---CCC-----CchHHHHHHHHHhc
Q 005265 541 AGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRN---IMLGEYVAKKLLEIE---PSN-----SGPYVLLSNMYAEL 607 (705)
Q Consensus 541 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~ 607 (705)
.+++++|.+.|+++ ...| +...+..+...+...|+ +++|...++++++.. |+. ..+|..++.+|...
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 56999999999988 4445 46778888888888888 888999999999874 442 24688899999999
Q ss_pred CChhHHHHHHHHHHhC
Q 005265 608 GRWGEVVRVRKLMRKR 623 (705)
Q Consensus 608 g~~~~A~~~~~~~~~~ 623 (705)
|++++|.+.+++..+.
T Consensus 235 ~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 235 RDKVKADAAWKNILAL 250 (272)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999864
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=1.4e-12 Score=124.26 Aligned_cols=191 Identities=11% Similarity=0.064 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHh
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACS 503 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~ 503 (705)
.+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+. .| +...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHHHHH
Confidence 333444444444444444444444321 13344444444444555555555555554442 22 2234444444455
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 005265 504 HAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIMLGEY 581 (705)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~ 581 (705)
..|++++|.++++.+.+.. +.+...+..+...|.+.|++++|...++++ .. +.+...+..+...+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555444321 122444444555555555555555555544 11 1234445555555555555555555
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 582 VAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 582 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.++++++..|++...+..++.+|...|++++|.+.++++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55555555555555555555555555555555555555544
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=1.5e-12 Score=124.02 Aligned_cols=182 Identities=12% Similarity=0.029 Sum_probs=148.8
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVL 499 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 499 (705)
+.+..++..+...|...|++++|...|+++. ..+...|..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 132 (243)
T 2q7f_A 54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLG 132 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567888889999999999999999998875 3467888899999999999999999999998842 23456788888
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHH
Q 005265 500 CACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~ 577 (705)
..+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|+++
T Consensus 133 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 133 TVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE 210 (243)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHH
Confidence 88999999999999999887642 235778888999999999999999999887 22 345778888999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 005265 578 LGEYVAKKLLEIEPSNSGPYVLLSNMYAEL 607 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 607 (705)
+|...++++++.+|+++..+..++.+....
T Consensus 211 ~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 211 KALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 999999999999999988777766555443
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=1.1e-11 Score=118.84 Aligned_cols=200 Identities=10% Similarity=-0.050 Sum_probs=153.2
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHH
Q 005265 389 GNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIV 465 (705)
Q Consensus 389 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 465 (705)
..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|.+.|+++. ..+...|..+..
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 113 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-------PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHH
Confidence 333344444444444444444444443 3566778888888888888888888888765 236678888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh
Q 005265 466 GCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCL 544 (705)
Q Consensus 466 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 544 (705)
.|...|++++|.++|+++.+.+..|+. ..+..+...+...|++++|..+++.+.+.. +.+...+..+..+|.+.|++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCH
Confidence 899999999999999998874455644 577788888899999999999999887642 23477888999999999999
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 005265 545 DEAKTLIEAM-PMQ-PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPY 597 (705)
Q Consensus 545 ~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 597 (705)
++|...++++ ... .+...+..+...+...|++++|.+.++++++..|+++...
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999987 334 4667788888889999999999999999999999987643
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.6e-12 Score=134.53 Aligned_cols=272 Identities=12% Similarity=0.042 Sum_probs=199.5
Q ss_pred eehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc---hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcH
Q 005265 350 VVSWNALIAGYTQNGENEEALGLFRLLKRESVCPT---HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDI 426 (705)
Q Consensus 350 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 426 (705)
...+......+...|++++|+..|++..+.+.... ...+..+...+...|+++.|...+..+....... ...+...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-GDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-cccHHHH
Confidence 34455666777888888888888888776532111 2456667777788888888888887765432100 0002235
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCC-----C----hhHHHHHHHHHHHcCC--------------------hHHHH
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVER-----D----WVSWNAMIVGCAQNGY--------------------GTEAL 477 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~--------------------~~~A~ 477 (705)
.++..+...|...|++++|...+++..+. + ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 67788888999999999999988876531 2 3478888888999999 99999
Q ss_pred HHHHHHHHC----CCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHH
Q 005265 478 GLFKKMLLC----GEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAK 548 (705)
Q Consensus 478 ~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 548 (705)
..+++..+. +-.|.. .++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998887652 112222 36778888899999999999999888654222222 347888899999999999999
Q ss_pred HHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCChhHHH
Q 005265 549 TLIEAM-P---MQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN------SGPYVLLSNMYAELGRWGEVV 614 (705)
Q Consensus 549 ~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 614 (705)
..+++. . ..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999876 1 1122 4577788888999999999999999999874433 446889999999999999999
Q ss_pred HHHHHHHh
Q 005265 615 RVRKLMRK 622 (705)
Q Consensus 615 ~~~~~~~~ 622 (705)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998865
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=4.9e-12 Score=114.60 Aligned_cols=163 Identities=13% Similarity=0.056 Sum_probs=133.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTC 533 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 533 (705)
+...|..+...|...|++++|++.|++.++ +.|+. .++..+..++...|++++|...+...... .| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 456677788888888888888888888887 45654 47777778888888888888888877654 33 3667777
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChh
Q 005265 534 MVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWG 611 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 611 (705)
+...+...+++++|.+.+++. ...| +...+..+...+...|++++|++.++++++++|+++.++..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 788888888898888888876 3334 57788888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 005265 612 EVVRVRKLMRKR 623 (705)
Q Consensus 612 ~A~~~~~~~~~~ 623 (705)
+|.+.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999998764
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=7.8e-13 Score=139.14 Aligned_cols=208 Identities=9% Similarity=-0.017 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCH-HHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHH
Q 005265 401 LQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSV-EDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEA 476 (705)
Q Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 476 (705)
++.+...+....... +.+...+..+...|...|++ ++|++.|++.. ..+...|..+...|...|++++|
T Consensus 84 ~~~al~~l~~~~~~~-------~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-------QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhccC-------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 455555565544433 46788999999999999999 99999999875 33678999999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcc---------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc-----
Q 005265 477 LGLFKKMLLCGEKPDHVTMIGVLCACSHA---------GLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRA----- 541 (705)
Q Consensus 477 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~----- 541 (705)
++.|++.++ +.|+...+..+...+... |++++|...++++.+. .|+ ...|..+..+|...
T Consensus 157 ~~~~~~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 157 HTCFSGALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHHHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhc
Confidence 999999999 568888889999999999 9999999999998764 455 88899999999999
Q ss_pred ---CChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHH
Q 005265 542 ---GCLDEAKTLIEAM-PMQP----DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEV 613 (705)
Q Consensus 542 ---g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 613 (705)
|++++|++.|++. ...| +...|..+..++...|++++|.+.|+++++++|++..++..++.++...|++++|
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 4455 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 005265 614 VRVRKLM 620 (705)
Q Consensus 614 ~~~~~~~ 620 (705)
.+.+.++
T Consensus 312 i~~~~~~ 318 (474)
T 4abn_A 312 LESKGKT 318 (474)
T ss_dssp HHHTTTC
T ss_pred HHHhccc
Confidence 9765443
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=2.5e-12 Score=129.01 Aligned_cols=268 Identities=12% Similarity=0.046 Sum_probs=196.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcc-----hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHh
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKRESVCPT-----HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIF 427 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 427 (705)
+......+...|++++|+..|+++.+.. |+ ...+..+...+...|+++.|...+..+.+..... ...+....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~ 84 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-GDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-cccHHHHH
Confidence 3445566777888888888888877653 32 2456667777777888888888877765431100 00023356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHH
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVE-----RD----WVSWNAMIVGCAQNGY--------------------GTEALG 478 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 478 (705)
++..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778888899999999999998887642 12 3377888888999999 899999
Q ss_pred HHHHHHHC----CCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHH
Q 005265 479 LFKKMLLC----GEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKT 549 (705)
Q Consensus 479 ~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 549 (705)
.+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98887652 11222 236777888889999999999999887643211122 3478888999999999999999
Q ss_pred HHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCChhHHHH
Q 005265 550 LIEAM-P---MQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN------SGPYVLLSNMYAELGRWGEVVR 615 (705)
Q Consensus 550 ~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 615 (705)
.+++. . ..++ ..++..+...+...|++++|...++++++..|.. ...+..++.+|.+.|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99876 1 1122 4577788888999999999999999999875433 3368899999999999999999
Q ss_pred HHHHHHhC
Q 005265 616 VRKLMRKR 623 (705)
Q Consensus 616 ~~~~~~~~ 623 (705)
.+++..+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998864
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=1.7e-11 Score=114.86 Aligned_cols=205 Identities=12% Similarity=-0.002 Sum_probs=159.2
Q ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHH
Q 005265 386 YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNA 462 (705)
Q Consensus 386 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 462 (705)
..+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|.+.|+++. ..+...|..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 344555555666666666666666666554 3567778888888888888888888888765 336778888
Q ss_pred HHHHHHHc-CChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHH
Q 005265 463 MIVGCAQN-GYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLG 539 (705)
Q Consensus 463 li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 539 (705)
+...+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++.+.+. .|+ ...+..+..+|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHH
Confidence 88889999 999999999999888444454 357788888899999999999999988754 344 778889999999
Q ss_pred hcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 005265 540 RAGCLDEAKTLIEAM-PMQ--PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600 (705)
Q Consensus 540 ~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 600 (705)
+.|++++|.+.++++ ... .+...+..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999999999887 223 4566777777778999999999999999999999987755443
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=2.8e-11 Score=117.54 Aligned_cols=227 Identities=9% Similarity=-0.107 Sum_probs=183.2
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh----cccHHHHHHHHHHHHHhCCCCCCCCCC
Q 005265 349 NVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACAN----LADLQLGRQAHTHVVKHGLRFLSGEES 424 (705)
Q Consensus 349 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (705)
++.++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 44566777778888888888888888887732 34566667777777 888888888888887753
Q ss_pred cHhHHHHHHHHHHh----cCCHHHHHHHHHccCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhH
Q 005265 425 DIFVGNSLIDMYMK----CGSVEDGCRIFETMVE-RDWVSWNAMIVGCAQ----NGYGTEALGLFKKMLLCGEKPDHVTM 495 (705)
Q Consensus 425 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 495 (705)
+...+..+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 46677788888888 8999999999988764 477788889999998 999999999999999865 45567
Q ss_pred HHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHH
Q 005265 496 IGVLCACSH----AGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGR----AGCLDEAKTLIEAMPMQPDAVIWGSLL 567 (705)
Q Consensus 496 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~ 567 (705)
..+...+.. .+++++|...|+...+. .+...+..+..+|.+ .+++++|.+.|++.-...+...+..+.
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 225 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLG 225 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 777777777 89999999999988654 246778888999999 999999999999872123477788888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhhCCCCC
Q 005265 568 AACKV----HRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 568 ~~~~~----~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
..+.. .+++++|.+.++++++..|++.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 88888 8999999999999999988653
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=1.6e-11 Score=119.20 Aligned_cols=242 Identities=11% Similarity=-0.017 Sum_probs=164.0
Q ss_pred cCChhHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHH
Q 005265 230 NGPASDALEVFVRMMASGIEP---DEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNE 306 (705)
Q Consensus 230 ~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 306 (705)
.|++++|+..|+++.+..... +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHHH
Confidence 466777777777777653211 34456666777777788888888887777763 4556777777777777777777
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchh
Q 005265 307 ARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHY 386 (705)
Q Consensus 307 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 386 (705)
|...|++.. . ..+.+...|..+...|...|++++|+..|+++.+. .|+..
T Consensus 96 A~~~~~~al---------------------------~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 145 (275)
T 1xnf_A 96 AYEAFDSVL---------------------------E-LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDP 145 (275)
T ss_dssp HHHHHHHHH---------------------------H-HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHH---------------------------h-cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCh
Confidence 775554221 1 12235667888888888899999999999888874 35554
Q ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCC-------hhH
Q 005265 387 TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERD-------WVS 459 (705)
Q Consensus 387 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~ 459 (705)
.....+..+...|+++.|...+........ ++...+. ++..+...++.++|...++.....+ ...
T Consensus 146 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 146 FRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-------KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 217 (275)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-------CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-------cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHH
Confidence 555555566777888999998887777653 3444443 6777777888888888888876542 466
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHH
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYF 515 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (705)
|..+...|...|++++|...|++..+ ..|+... ....++...|++++|++.+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~--~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVA--NNVHNFV--EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTCH--HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--CCchhHH--HHHHHHHHHHHHHhhHHHH
Confidence 77788888888888888888888887 4564322 2234556667777776654
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=1.1e-09 Score=118.07 Aligned_cols=439 Identities=10% Similarity=0.019 Sum_probs=278.2
Q ss_pred hHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCC---hHHHHHH
Q 005265 132 FSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGR---VSCARRV 208 (705)
Q Consensus 132 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~ 208 (705)
..+.+..|++....++ -|..+|..++..+.+.+.++.+..+++.++.. ++.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 4445555666655543 47888888888888888888888888888877 45566777777877777787 8888888
Q ss_pred HhccCC-----CCcchHHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CCCH-hHHHHHHHHHH---------
Q 005265 209 FDGMRE-----RNIVSWNSLITCYEQNGPA--------SDALEVFVRMMA-SGI-EPDE-VTLASVVSACA--------- 263 (705)
Q Consensus 209 ~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~--------- 263 (705)
|++... |++..|...+....+.++. +.+.++|+..+. .|. .|+. ..|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 888653 6677777777766665543 233466666554 465 5543 45555554332
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 005265 264 SLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFT 343 (705)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 343 (705)
..++++.+..+|..++... ...-..+|......-...+. ..+.+++.+ ....++.|...+.
T Consensus 206 eq~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHH
Confidence 1234566777777777421 11112333322221111111 011111111 0011222222222
Q ss_pred h-------cCC--------------C--C------eehHHHHHHHHHHcC-------ChHHHHHHHHHhhhCCCCcchhh
Q 005265 344 K-------MLE--------------R--N------VVSWNALIAGYTQNG-------ENEEALGLFRLLKRESVCPTHYT 387 (705)
Q Consensus 344 ~-------~~~--------------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t 387 (705)
. +.. | + ...|...+.---..+ ..+.+..+|++.+..- +-+...
T Consensus 267 e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~l 345 (679)
T 4e6h_A 267 DWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEI 345 (679)
T ss_dssp HHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHH
T ss_pred HHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHH
Confidence 2 100 0 0 123444443322222 1234556777776542 335556
Q ss_pred HHHHHHHHhhcccHHHHH-HHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC------------
Q 005265 388 FGNLLNACANLADLQLGR-QAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE------------ 454 (705)
Q Consensus 388 ~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------ 454 (705)
|.....-+...|+.+.|. .++...+... +.+...+-.++....+.|+++.|.++|+++..
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~-------P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCI-------PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 666666677778888886 9999988765 45777788889999999999999999988753
Q ss_pred -C------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHhc-cCcHHHHHHHHHHhH
Q 005265 455 -R------------DWVSWNAMIVGCAQNGYGTEALGLFKKMLLC-GEKPDHVTMIGVLCACSH-AGLVEEGRKYFSSMS 519 (705)
Q Consensus 455 -~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~ 519 (705)
| ....|...+....+.|+.+.|..+|.+.++. +. +....|...+..-.+ .++++.|..+|+...
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2 1236888888888889999999999999885 21 122233322222223 355899999999998
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 520 KEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP----DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 520 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
+.++ .+...+...++.....|+.+.|..+|++. ...| ....|...+..-..+|+.+.+.++.+++.+..|++.
T Consensus 498 k~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 498 KYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 8743 34666778888888999999999999997 3233 345888888888999999999999999999999875
Q ss_pred chHHHHHHH
Q 005265 595 GPYVLLSNM 603 (705)
Q Consensus 595 ~~~~~l~~~ 603 (705)
. ...+++-
T Consensus 576 ~-~~~f~~r 583 (679)
T 4e6h_A 576 K-LEEFTNK 583 (679)
T ss_dssp H-HHHHHHH
T ss_pred H-HHHHHHH
Confidence 4 4444333
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=4.1e-12 Score=131.32 Aligned_cols=297 Identities=13% Similarity=0.007 Sum_probs=207.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCC----eehHHHHHHHHH
Q 005265 286 NDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERN----VVSWNALIAGYT 361 (705)
Q Consensus 286 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~li~~~~ 361 (705)
.....+......+...|++++|...|++.. +. ...+ ...|..+...|.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al---------------------------~~-~~~~~~~~~~~~~~l~~~~~ 58 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAV---------------------------QV-GTEDLKTLSAIYSQLGNAYF 58 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------------HH-CCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHH---------------------------hc-CcccHHHHHHHHHHHHHHHH
Confidence 344455556666777777777776655322 11 1112 235667777788
Q ss_pred HcCChHHHHHHHHHhhhC----CCCc-chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHH
Q 005265 362 QNGENEEALGLFRLLKRE----SVCP-THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMY 436 (705)
Q Consensus 362 ~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 436 (705)
..|++++|+..+++.... +-.| ...++..+...+...|+++.|...+..+.+..... ........++..+...|
T Consensus 59 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 59 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL-NDKVGEARALYNLGNVY 137 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHH
Confidence 888888888887776432 2122 23456667777788888888888887776542100 00011245788888999
Q ss_pred HhcCC--------------------HHHHHHHHHccCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 005265 437 MKCGS--------------------VEDGCRIFETMVE-----R----DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCG 487 (705)
Q Consensus 437 ~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 487 (705)
...|+ +++|...+++... . ...+|..+...|...|++++|...+++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 99999 9999988876542 1 23478888999999999999999999987631
Q ss_pred C-CCC----hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC----
Q 005265 488 E-KPD----HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAM---- 554 (705)
Q Consensus 488 ~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 554 (705)
. .++ ..++..+...+...|++++|...++...+...-.++ ..++..+...|.+.|++++|.+.+++.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 1 122 137888888999999999999999987643211122 567888999999999999999999876
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CCCchHHHHHHHHHhcCChh
Q 005265 555 PMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEP------SNSGPYVLLSNMYAELGRWG 611 (705)
Q Consensus 555 ~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 611 (705)
+..++ ..++..+...+...|++++|...+++++++.+ ....++..++.++...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11122 55778888889999999999999999998732 23456778888888888764
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=9.6e-12 Score=128.89 Aligned_cols=240 Identities=11% Similarity=-0.010 Sum_probs=176.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhC----CC-CcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcH
Q 005265 352 SWNALIAGYTQNGENEEALGLFRLLKRE----SV-CPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDI 426 (705)
Q Consensus 352 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 426 (705)
.|..+...|...|++++|+..|++..+. +- ......+..+...+...|+++.|...+..+.+..... ...+...
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~ 166 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL-GDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-hchHHHH
Confidence 5667777777888888888887776543 11 1233456667777788888888888887776542100 0002345
Q ss_pred hHHHHHHHHHHhcCC-----------------HHHHHHHHHccCC-----C----ChhHHHHHHHHHHHcCChHHHHHHH
Q 005265 427 FVGNSLIDMYMKCGS-----------------VEDGCRIFETMVE-----R----DWVSWNAMIVGCAQNGYGTEALGLF 480 (705)
Q Consensus 427 ~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~ 480 (705)
.++..+...|...|+ +++|.+.+++..+ . ...+|..+...|...|++++|+..+
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 678888999999999 9999988887642 1 2347888899999999999999999
Q ss_pred HHHHHCCCC-CC----hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHH
Q 005265 481 KKMLLCGEK-PD----HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLI 551 (705)
Q Consensus 481 ~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 551 (705)
++..+.... ++ ..++..+...+...|++++|...++.......-..+ ...+..+..+|.+.|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 998773110 11 126788888999999999999999987654211111 567888999999999999999999
Q ss_pred HhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 552 EAM-PM---QPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 552 ~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
++. .. .++ ..++..+...+...|++++|...+++++++.+.
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 886 11 112 447778888899999999999999999988664
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=1.2e-11 Score=135.07 Aligned_cols=162 Identities=18% Similarity=0.169 Sum_probs=132.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTC 533 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 533 (705)
+..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|++.|++..+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 345677777777777888888888887777 56664 47777778888888888888888877643 565 777888
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChh
Q 005265 534 MVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWG 611 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 611 (705)
+..+|.+.|++++|++.|++. .+.| +...|+.+...+...|++++|++.|+++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888888888888888876 4455 56788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 005265 612 EVVRVRKLMRK 622 (705)
Q Consensus 612 ~A~~~~~~~~~ 622 (705)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888754
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=3.6e-11 Score=108.78 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=144.8
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHH
Q 005265 424 SDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVL 499 (705)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll 499 (705)
.+..+|..+...|.+.|++++|++.|++.. ..+..+|..+...|...|++++|+..+.+... ..|+. ..+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 467789999999999999999999999876 34778999999999999999999999999988 44544 5677777
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005265 500 CACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNI 576 (705)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 576 (705)
..+...++++.|...+....+. .|+ ...+..+..+|.+.|++++|++.|++. ...| +..+|..+..++...|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 8889999999999999988754 444 788999999999999999999999987 4444 677899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCC
Q 005265 577 MLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 577 ~~a~~~~~~~~~~~p~~~ 594 (705)
++|.+.|+++++++|+++
T Consensus 158 ~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhCCccCH
Confidence 999999999999999764
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=4.8e-11 Score=119.53 Aligned_cols=280 Identities=13% Similarity=-0.014 Sum_probs=147.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCC
Q 005265 259 VSACASLAAFKEGLQIHARLMRCEKLRND----LVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASS 334 (705)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 334 (705)
...+...|++++|...++++++.. +.+ ..++..+...|...|++++|...+++..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------------------- 70 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL------------------- 70 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------
Confidence 344455666666666666666643 222 2455666677777777777776654321
Q ss_pred HHHHHHHHHhcCCC--CeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCC-cc----hhhHHHHHHHHhhccc-------
Q 005265 335 VKSARLMFTKMLER--NVVSWNALIAGYTQNGENEEALGLFRLLKRESVC-PT----HYTFGNLLNACANLAD------- 400 (705)
Q Consensus 335 ~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~------- 400 (705)
.+......+ ...++..+...|...|++++|...+++..+.... ++ ..++..+...+...|+
T Consensus 71 -----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (338)
T 3ro2_A 71 -----TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP 145 (338)
T ss_dssp -----HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSC
T ss_pred -----HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchh
Confidence 222222111 2345667777888888888888888776543110 11 2356666777777777
Q ss_pred -------------HHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHH
Q 005265 401 -------------LQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGC 467 (705)
Q Consensus 401 -------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 467 (705)
++.|...+.......... ...+....++..+...|...|++++|...+++..+..
T Consensus 146 ~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------- 213 (338)
T 3ro2_A 146 QDTGEFPEDVRNALQAAVDLYEENLSLVTAL-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA----------- 213 (338)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----------
Confidence 777777666554321000 0001122344555555555555555555555432100
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcC
Q 005265 468 AQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAG 542 (705)
Q Consensus 468 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 542 (705)
...+..+. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|
T Consensus 214 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (338)
T 3ro2_A 214 ----------------KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 277 (338)
T ss_dssp ----------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence 00000000 113444444445555555555555444322110111 345556666666666
Q ss_pred ChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 543 CLDEAKTLIEAM-PM---QPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 543 ~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
++++|...++++ .. .++ ..++..+...+...|++++|...+++++++.+.
T Consensus 278 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 666666666654 10 111 346667777788888888888888888877553
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=3.1e-11 Score=123.71 Aligned_cols=230 Identities=8% Similarity=-0.051 Sum_probs=168.6
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC-----C-----ChhHH
Q 005265 391 LLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE-----R-----DWVSW 460 (705)
Q Consensus 391 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~ 460 (705)
....+...|+++.|...+..+.+..... +.......++..+...|...|+++.|...+++..+ + ...++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFV-KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3345567788888888888887642100 00011346788899999999999999988887642 1 23478
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----hhHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC-hhHH
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEK-PDH----VTMIGVLCACSHAGLVEEGRKYFSSMSKEH---GLAPL-KDHY 531 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~ 531 (705)
+.+...|...|++++|++.|++.++.... ++. .++..+...+...|++++|...+++..+-. +..|. ..++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 88899999999999999999998763111 111 378888889999999999999999886521 22243 6778
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCchHHHHH
Q 005265 532 TCMVDLLGRAGCLDEAKTLIEAM-PM-----QPD-AVIWGSLLAACKVHRN---IMLGEYVAKKLLEIEPSNSGPYVLLS 601 (705)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~ 601 (705)
..+..+|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ +++|...+++. ...|.....+..++
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la 346 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 89999999999999999999886 11 222 2234556666888888 77777777765 23344455688999
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 005265 602 NMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+|...|++++|.+.+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999875
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=6.8e-09 Score=112.08 Aligned_cols=143 Identities=13% Similarity=0.076 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC---CChhhHHHHHHHHHhcCC---hhHHHHHHh
Q 005265 36 SDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN---KNVFTWNSIITGLLKWGF---IDDASRLFA 109 (705)
Q Consensus 36 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~ 109 (705)
.+-...++..+... +-|...|..++..+.+.+.++.++.+|+.+.. .....|...+..-.+.|. ++.+..+|+
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 33444455555444 45777777777777777777777777777754 244566777777677777 777777777
Q ss_pred cCCC-----CCcccHHHHHHHHHhCCCh--------HHHHHHHHHhHh-CCC-CCC-hhhHHHHHHHhhC---------C
Q 005265 110 SMPE-----RDQCSWNSMVSGFAQHDRF--------SEALGYFVKMHS-ENF-ALS-EYSFGSALSACAG---------S 164 (705)
Q Consensus 110 ~~~~-----~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~---------~ 164 (705)
+... |++..|..-+.-..+.++. +...++|+.... .|. .|+ ...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 6542 4555666655544443332 223356655443 354 443 3455555544332 1
Q ss_pred CCcHHHHHHHHHHHH
Q 005265 165 VDFKMGTQVHALLSK 179 (705)
Q Consensus 165 ~~~~~a~~~~~~~~~ 179 (705)
++++.+..+|..++.
T Consensus 208 ~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHh
Confidence 234556667766664
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=2.1e-10 Score=113.44 Aligned_cols=211 Identities=9% Similarity=0.009 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHh-------cCCH-------HHHHHHHHccCC---C-ChhHHHHH
Q 005265 402 QLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMK-------CGSV-------EDGCRIFETMVE---R-DWVSWNAM 463 (705)
Q Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~---~-~~~~~~~l 463 (705)
+.|..+|+.+++.. +.++.+|..++..+.. .|++ ++|..+|++... | +...|..+
T Consensus 33 ~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~ 105 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 56667777777665 4678888888887763 5886 899999998754 3 56789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH-
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLCGEKPDHV--TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLG- 539 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~- 539 (705)
+..+...|++++|..+|+++++ +.|+.. .|..+...+.+.|++++|..+|++..+. .| +...|...+....
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998 677653 7888899999999999999999988753 34 3555554444432
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-CCchHHHHHHHHHhcCChhHH
Q 005265 540 RAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEI---EPS-NSGPYVLLSNMYAELGRWGEV 613 (705)
Q Consensus 540 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A 613 (705)
..|+.++|.++|+++ ...| +...|..++..+...|++++|..+|+++++. .|+ ....|..++..+.+.|++++|
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 379999999999987 3233 6788999999999999999999999999996 453 566788999999999999999
Q ss_pred HHHHHHHHhCC
Q 005265 614 VRVRKLMRKRG 624 (705)
Q Consensus 614 ~~~~~~~~~~~ 624 (705)
..+++++.+..
T Consensus 261 ~~~~~~a~~~~ 271 (308)
T 2ond_A 261 LKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999988654
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=8.7e-10 Score=108.90 Aligned_cols=217 Identities=10% Similarity=0.011 Sum_probs=170.6
Q ss_pred HHHHHHHHHhhhCCCCcchhhHHHHHHHHh-------hcccH-------HHHHHHHHHHHHh-CCCCCCCCCCcHhHHHH
Q 005265 367 EEALGLFRLLKRESVCPTHYTFGNLLNACA-------NLADL-------QLGRQAHTHVVKH-GLRFLSGEESDIFVGNS 431 (705)
Q Consensus 367 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 431 (705)
++|..+|++..... +.+...|......+. ..|++ ++|..+++..++. . +.+...|..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-------p~~~~~~~~ 104 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-------KKNMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-------TTCHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-------cccHHHHHH
Confidence 57777888777642 224445555555543 34664 8899999998883 4 467789999
Q ss_pred HHHHHHhcCCHHHHHHHHHccCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHh-cc
Q 005265 432 LIDMYMKCGSVEDGCRIFETMVE--R-DWV-SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACS-HA 505 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~-~~ 505 (705)
++..+.+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++.++. .|+. ..|........ ..
T Consensus 105 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999998864 3 344 8999999999999999999999999984 3443 34443333322 37
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHH
Q 005265 506 GLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-P---MQP--DAVIWGSLLAACKVHRNIMLG 579 (705)
Q Consensus 506 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~a 579 (705)
|++++|..+|+...+.. +.+...|..++..+.+.|++++|..+|+++ . ..| ....|..++......|+.+.|
T Consensus 183 ~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp CCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998753 224788999999999999999999999988 2 355 467899999999999999999
Q ss_pred HHHHHHHHhhCCCCCc
Q 005265 580 EYVAKKLLEIEPSNSG 595 (705)
Q Consensus 580 ~~~~~~~~~~~p~~~~ 595 (705)
..+++++++..|++..
T Consensus 261 ~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 261 LKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHcccccc
Confidence 9999999999998654
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=3.7e-11 Score=118.99 Aligned_cols=200 Identities=14% Similarity=0.146 Sum_probs=164.1
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--------C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--------R---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLC----- 486 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 486 (705)
+.+..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|...+++.++.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 44567888999999999999999999988754 2 3457888999999999999999999998874
Q ss_pred -CCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-
Q 005265 487 -GEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEH-----GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PM- 556 (705)
Q Consensus 487 -g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~- 556 (705)
+-.|. ..++..+...+...|++++|..+++.+.+.. +-.|. ...+..+...|...|++++|++.++++ ..
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22333 3578888899999999999999999887643 22343 667888999999999999999999876 11
Q ss_pred -------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---------------------------------------
Q 005265 557 -------QP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEI--------------------------------------- 589 (705)
Q Consensus 557 -------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------------------------------- 589 (705)
.| ...++..+...+...|++++|...++++++.
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 23 2447788888899999999999999999874
Q ss_pred ----------CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 590 ----------EPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 590 ----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.|....++..++.+|.+.|++++|.+.+++..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355566788999999999999999999998875
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=3.1e-09 Score=108.22 Aligned_cols=265 Identities=13% Similarity=0.031 Sum_probs=187.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhCCCCcchh----hHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCC--cHhH
Q 005265 355 ALIAGYTQNGENEEALGLFRLLKRESVCPTHY----TFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEES--DIFV 428 (705)
Q Consensus 355 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~ 428 (705)
.....+...|++++|...+++........+.. .+..+...+...|+++.|...+.......... + .+ ...+
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~-~~~~~~~~ 95 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--D-VWHYALWS 95 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--T-CHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--C-cHHHHHHH
Confidence 34455667888888888888877653222221 34555566777889999988888776543210 0 11 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCC----------C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--Chh
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVE----------R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEK--P--DHV 493 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 493 (705)
+..+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... | ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 56778889999999999999887642 1 1235667788899999999999999998874221 1 123
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhCC-CCCC-----HHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYT-----CMVDLLGRAGCLDEAKTLIEAMP-MQPD-----AVI 562 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~ 562 (705)
++..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 577778888999999999999998865422111111222 23355789999999999999882 2221 335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 563 WGSLLAACKVHRNIMLGEYVAKKLLEIEPSN------SGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 563 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+..+...+...|++++|...++++++..+.. ...+..++.++...|++++|...+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6677788999999999999999998763321 13567789999999999999999998865
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=1.9e-11 Score=121.03 Aligned_cols=242 Identities=12% Similarity=0.088 Sum_probs=166.5
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHhhhC-------CCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCC-CCC
Q 005265 351 VSWNALIAGYTQNGENEEALGLFRLLKRE-------SVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFL-SGE 422 (705)
Q Consensus 351 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 422 (705)
.+|..+...+...|++++|+.+|+++.+. ........+..+...+...|+++.|...+..+.+...... ...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45777788888888888888888887763 2233445677777888888999999888888876520000 000
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER-----------DWVSWNAMIVGCAQNGYGTEALGLFKKMLLC----- 486 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 486 (705)
+....++..+...|...|++++|...|++..+. ....+..+...+...|++++|+++|+++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 345678889999999999999999999877521 3456888899999999999999999998874
Q ss_pred -CCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCCC-h------hHHHHHHHHHHhcCChHHHHHHH
Q 005265 487 -GEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEH------GLAPL-K------DHYTCMVDLLGRAGCLDEAKTLI 551 (705)
Q Consensus 487 -g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-~------~~~~~l~~~~~~~g~~~~A~~~~ 551 (705)
+..|+. .++..+...+...|++++|..+++.+.+.. ...+. . ..+..+...+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 224443 478888889999999999999999887531 11121 1 12222333444555666666666
Q ss_pred HhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 552 EAMP-MQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 552 ~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
+... ..| +..++..+...|...|++++|.+.+++++++.|.
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6663 233 4567888999999999999999999999998775
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=9.4e-11 Score=110.28 Aligned_cols=188 Identities=14% Similarity=0.008 Sum_probs=121.8
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE----RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIG 497 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ 497 (705)
+.++..+......+...|++++|...|++..+ ++...|..+..++...|++++|++.|++.++ ..|+. ..+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHH
Confidence 34556777777777777777777777776542 5566666677777777777777777777776 45554 46666
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHH
Q 005265 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPL-K-------DHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD---AVIWGS 565 (705)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ 565 (705)
+..++...|++++|...++...+. .|+ . ..|..+...+.+.|++++|++.|+++ ...|+ ...|..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 777777777777777777777654 233 3 34666666677777777777777765 44554 335555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+...+.. .+...++++..+.+.+...|. .......|.+++|...+++..+
T Consensus 159 l~~~~~~-----~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 159 LGVLFYN-----NGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHH-----HHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 5555543 334455666666555543332 2334445667999999988875
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=1.2e-10 Score=122.53 Aligned_cols=177 Identities=12% Similarity=-0.012 Sum_probs=156.0
Q ss_pred HHHHHHHHHccC---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHH
Q 005265 442 VEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYG-TEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFS 516 (705)
Q Consensus 442 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 516 (705)
++++...++... ..+...|..+...|...|++ ++|++.|++.++ ..|+ ...+..+..++...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666543 33778899999999999999 999999999998 5666 4689999999999999999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHH
Q 005265 517 SMSKEHGLAPLKDHYTCMVDLLGRA---------GCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVH--------RNIM 577 (705)
Q Consensus 517 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~ 577 (705)
.+. .+.|+...+..+..+|... |++++|++.|+++ ...| +...|..+..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 886 4568888999999999999 9999999999987 4444 578899999999888 9999
Q ss_pred HHHHHHHHHHhhCC---CCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 578 LGEYVAKKLLEIEP---SNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 578 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+|...|+++++++| +++..|..++.+|...|++++|.+.+++..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999999864
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=2.6e-10 Score=107.16 Aligned_cols=152 Identities=13% Similarity=0.027 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 005265 456 DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCM 534 (705)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 534 (705)
|+..|......+...|++++|+..|++.++....++...+..+..++...|++++|+..++...+ ..|+ ...+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHH
Confidence 44555555666666666666666666666543224444555555566666666666666665543 2343 5556666
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHH
Q 005265 535 VDLLGRAGCLDEAKTLIEAM-PMQP-DA-------VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS--NSGPYVLLSNM 603 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 603 (705)
..+|.+.|++++|++.+++. ...| +. ..|..+...+...|++++|...++++++++|+ ++.++..++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 66666666666666666655 2223 22 33555555556666666666666666666666 55666666666
Q ss_pred HHhcCCh
Q 005265 604 YAELGRW 610 (705)
Q Consensus 604 ~~~~g~~ 610 (705)
|...|+.
T Consensus 163 ~~~~~~~ 169 (228)
T 4i17_A 163 FYNNGAD 169 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655554
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=2.7e-10 Score=102.90 Aligned_cols=161 Identities=14% Similarity=0.005 Sum_probs=100.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCAC 502 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 502 (705)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+. .|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~----------- 74 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APD----------- 74 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-----------
Confidence 34455555566666666666666665543 23444555555555555555555555555442 221
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-P-MQPDAVIWGSLLAACKVHRNIMLGE 580 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~ 580 (705)
+...+..+...|...|++++|.+.++++ . .+.+...+..+...+...|++++|.
T Consensus 75 ------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 130 (186)
T 3as5_A 75 ------------------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI 130 (186)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHH
Confidence 2344445555555555555555555554 1 1235566777777777888888888
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 581 YVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 581 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
..++++++..|+++..+..++.++...|++++|.+.+++..+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8888888888888788888888888888888888888877653
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=1.3e-09 Score=111.15 Aligned_cols=235 Identities=11% Similarity=0.020 Sum_probs=138.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhCCC-Ccc----hhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhH
Q 005265 354 NALIAGYTQNGENEEALGLFRLLKRESV-CPT----HYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFV 428 (705)
Q Consensus 354 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 428 (705)
......+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+....+..............+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445567789999999999998875421 122 34677777888899999999999888775422100000112456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCChhhH
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVE-----RD----WVSWNAMIVGCAQNGYGTEALGLFKKMLLC----GEKPDHVTM 495 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~ 495 (705)
++.+..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|++.|++..+. +.+....++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 67777888888888888887776542 11 235666677777777777777777776651 111123456
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCC--CC-hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHH
Q 005265 496 IGVLCACSHAGLVEEGRKYFSSMSKEHGLA--PL-KDHYTCMVDLLGRAGC---LDEAKTLIEAMPMQPDA-VIWGSLLA 568 (705)
Q Consensus 496 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~ 568 (705)
..+...+...|++++|...+++..+...-. |. ...+..+...|...|+ +.+|+..+++.+..|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666667777777777766665432211 11 3334445555555555 55666666654322222 13333444
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 005265 569 ACKVHRNIMLGEYVAKKLLE 588 (705)
Q Consensus 569 ~~~~~g~~~~a~~~~~~~~~ 588 (705)
.|...|++++|...++++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 45555555555555555443
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=1.6e-09 Score=97.77 Aligned_cols=138 Identities=15% Similarity=0.051 Sum_probs=99.2
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVL 499 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 499 (705)
+.+..++..+...|...|++++|...++++. ..+...|..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 117 (186)
T 3as5_A 39 AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLG 117 (186)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHH
Confidence 4577889999999999999999999999875 3467788888888889999999999998888741 22334555555
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005265 500 CACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLG 579 (705)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 579 (705)
..+...|++++|..+++.+.+. . +.+..++..+...+...|++++|
T Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~---~-------------------------------~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 118 VALDNLGRFDEAIDSFKIALGL---R-------------------------------PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---C-------------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHhc---C-------------------------------ccchHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666655432 1 22345566666667777777777
Q ss_pred HHHHHHHHhhCCCCCc
Q 005265 580 EYVAKKLLEIEPSNSG 595 (705)
Q Consensus 580 ~~~~~~~~~~~p~~~~ 595 (705)
...++++++..|++..
T Consensus 164 ~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 164 LPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHcCCCchh
Confidence 7777777777666544
No 81
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.16 E-value=1.5e-09 Score=111.04 Aligned_cols=235 Identities=8% Similarity=-0.003 Sum_probs=175.6
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhC----CCCc-chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH
Q 005265 356 LIAGYTQNGENEEALGLFRLLKRE----SVCP-THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGN 430 (705)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (705)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+....+.........+....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677788888888888887653 1111 23466777777888888888888888777543210000012346788
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHH
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVE-----RD----WVSWNAMIVGCAQNGYGTEALGLFKKMLLC----GEKPD-HVTMI 496 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 496 (705)
.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|++.|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999988752 12 247888999999999999999999998872 33244 35788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC-hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 005265 497 GVLCACSHAGLVEEGRKYFSSMSKEHGL--APL-KDHYTCMVDLLGRAGC---LDEAKTLIEAMPMQPD-AVIWGSLLAA 569 (705)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 569 (705)
.+...+...|++++|...+++..+...- .|. ...+..+...|...|+ +++|+.++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999999999987653211 122 3346778889999999 9999999999865554 3366778888
Q ss_pred HHhcCCHHHHHHHHHHHHhhC
Q 005265 570 CKVHRNIMLGEYVAKKLLEIE 590 (705)
Q Consensus 570 ~~~~g~~~~a~~~~~~~~~~~ 590 (705)
|...|++++|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999873
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=4.1e-08 Score=99.87 Aligned_cols=269 Identities=8% Similarity=-0.078 Sum_probs=165.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCh----hHHHH
Q 005265 222 SLITCYEQNGPASDALEVFVRMMASGIEPDEV----TLASVVSACASLAAFKEGLQIHARLMRCEKLRNDL----VLGNA 293 (705)
Q Consensus 222 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 293 (705)
.....+...|++++|...+++........+.. .+..+...+...|+++.|...+.+..+...-..+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667788888888888877643222222 34445556667788888888888776632111121 23556
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCC----CeehHHHHHHHHHHcCChHHH
Q 005265 294 LVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLER----NVVSWNALIAGYTQNGENEEA 369 (705)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A 369 (705)
+...+...|++++|...+++. .++......+ ....+..+...+...|++++|
T Consensus 99 la~~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 154 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 677788888888888766532 2344333222 123566677888999999999
Q ss_pred HHHHHHhhhCCCC--c--chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHH-----HHHHHHHhcC
Q 005265 370 LGLFRLLKRESVC--P--THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGN-----SLIDMYMKCG 440 (705)
Q Consensus 370 ~~~~~~m~~~g~~--p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g 440 (705)
...+++....... + ...++..+...+...|+++.|...+......... ......+. ..+..+...|
T Consensus 155 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 155 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN-----GKYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-----SCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-----cCcchhHHHHHHHHHHHHHHHCC
Confidence 9999987654321 1 2245667777888999999999999988765320 11111111 2334577888
Q ss_pred CHHHHHHHHHccCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCChh-hHHHHHHHHhccCcH
Q 005265 441 SVEDGCRIFETMVERD-------WVSWNAMIVGCAQNGYGTEALGLFKKMLLC----GEKPDHV-TMIGVLCACSHAGLV 508 (705)
Q Consensus 441 ~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-~~~~ll~~~~~~g~~ 508 (705)
++++|...+++....+ ...+..+...+...|++++|...+++.... |..++.. .+..+..++...|+.
T Consensus 230 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 309 (373)
T 1hz4_A 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 309 (373)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCH
Confidence 8888888888776432 123556667777778888887777776542 1111111 334444455556666
Q ss_pred HHHHHHHHHhH
Q 005265 509 EEGRKYFSSMS 519 (705)
Q Consensus 509 ~~a~~~~~~~~ 519 (705)
++|...++...
T Consensus 310 ~~A~~~l~~al 320 (373)
T 1hz4_A 310 SDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555543
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.12 E-value=5.5e-10 Score=122.09 Aligned_cols=164 Identities=15% Similarity=0.141 Sum_probs=147.1
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHH
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGV 498 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 498 (705)
+.+...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++.++ +.|+. ..|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 55678999999999999999999999998763 4678999999999999999999999999999 67875 589999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005265 499 LCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRN 575 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 575 (705)
..++...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.|++. .+.| +...|..+...+...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999988754 566 889999999999999999999999987 5566 57789999999999999
Q ss_pred HHHHHHHHHHHHhhCC
Q 005265 576 IMLGEYVAKKLLEIEP 591 (705)
Q Consensus 576 ~~~a~~~~~~~~~~~p 591 (705)
+++|.+.+++++++.|
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 9999999999988644
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=2.9e-09 Score=102.31 Aligned_cols=204 Identities=9% Similarity=-0.026 Sum_probs=141.7
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE--R-D---WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH---- 492 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---- 492 (705)
+.+...+..+...+.+.|++++|...|+++.. | + ...+..+..+|...|++++|+..|++.++. .|+.
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhH
Confidence 34566677777778888888888888887763 2 3 456777777888888888888888888873 3422
Q ss_pred hhHHHHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 005265 493 VTMIGVLCACSH--------AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIW 563 (705)
Q Consensus 493 ~~~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 563 (705)
..+..+..++.. .|++++|...|+.+.+.. |+ ......+.......+.+ ...+
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~ 151 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHH
Confidence 345556666666 788888888888776542 33 22222221111111111 1124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCccCCc
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNS---GPYVLLSNMYAEL----------GRWGEVVRVRKLMRKRGVVKQPG 630 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~ 630 (705)
..+...+...|++++|...++++++..|+++ ..+..++.+|... |++++|...++++.+..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~------ 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF------ 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC------
Confidence 5677789999999999999999999999854 4788999999877 99999999999988532
Q ss_pred eeEEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHH
Q 005265 631 CSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKR 669 (705)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 669 (705)
..+|...+....+..+..++.+
T Consensus 226 -----------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 -----------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -----------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2345556777777777777655
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=1.6e-09 Score=105.27 Aligned_cols=227 Identities=14% Similarity=0.099 Sum_probs=146.8
Q ss_pred hhcccHHHHHHHHHHHHHhCCCCCC-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC----------C-ChhHHHHH
Q 005265 396 ANLADLQLGRQAHTHVVKHGLRFLS-GEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE----------R-DWVSWNAM 463 (705)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l 463 (705)
...|+++.|...+++..+.-....+ ..+....++..+...|...|++++|...|+++.. + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888877753210000 0022356777888888888998888888877642 1 34567888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-hhH
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLC------GEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEH-----GLAPL-KDH 530 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~ 530 (705)
...|...|++++|++.|++..+. .-.|+ ..++..+...+...|++++|..+++++.+.. +-.|. ...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888999998888888763 11233 3467778888888888888888888876531 11232 567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCC
Q 005265 531 YTCMVDLLGRAGCLDEAKTLIEAMP----------MQPD-AVIWGSLLAACKVHRN------IMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~ 593 (705)
+..+..+|.+.|++++|...++++- ..+. ...|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7788888888888888888887651 1222 2233333333333222 222222222222234555
Q ss_pred CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 594 SGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 594 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
...+..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56788999999999999999999998875
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=4.2e-08 Score=99.97 Aligned_cols=238 Identities=10% Similarity=-0.051 Sum_probs=162.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-----ChhHH
Q 005265 222 SLITCYEQNGPASDALEVFVRMMASGI-EPD----EVTLASVVSACASLAAFKEGLQIHARLMRCEKLRN-----DLVLG 291 (705)
Q Consensus 222 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~ 291 (705)
.....+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+.++++...-.+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344456778888888888888765311 122 33566677777888888888888888776421111 13466
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCC--CeehHHHHHHHHHHcCChHHH
Q 005265 292 NALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLER--NVVSWNALIAGYTQNGENEEA 369 (705)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 369 (705)
+.+...|...|++++|...|++. .+++.....+ ...+++.+...|...|++++|
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAA------------------------LELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH------------------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 67778888888888888666532 2444333222 234677888899999999999
Q ss_pred HHHHHHhhhC----CCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCC---H
Q 005265 370 LGLFRLLKRE----SVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGS---V 442 (705)
Q Consensus 370 ~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~ 442 (705)
+..|++..+. +.+....++..+...+.+.|+++.|...+....+..... +.+.....+..+...|...|+ +
T Consensus 242 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR--SHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT--CCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999988761 222335677888888999999999999999988764311 012334456667777777887 8
Q ss_pred HHHHHHHHccCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005265 443 EDGCRIFETMVER--DWVSWNAMIVGCAQNGYGTEALGLFKKMLL 485 (705)
Q Consensus 443 ~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (705)
.+|+..+++.... ....+..+...|...|++++|...|++..+
T Consensus 320 ~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 320 HDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888775432 223556677788888888888888887765
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=2.6e-09 Score=104.46 Aligned_cols=166 Identities=10% Similarity=-0.057 Sum_probs=95.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCCC-----C----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC----
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVER-----D----WVSWNAMIVGCAQN-GYGTEALGLFKKMLLCGEKPD---- 491 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~---- 491 (705)
..+++.+..+|.+.|++++|+..|++..+- + ..+|+.+...|... |++++|+..|++.++. .|+
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~ 154 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCCh
Confidence 345666666666666666666666655321 1 23566667777775 7777777777776652 221
Q ss_pred ---hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-
Q 005265 492 ---HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLK-----DHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAV- 561 (705)
Q Consensus 492 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~- 561 (705)
..++..+...+...|++++|+..|+...+...-.+.. ..|..+..++...|++++|...|++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2346666667777777777777777665431111111 14556666677777777777777766 3344321
Q ss_pred -----HHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCC
Q 005265 562 -----IWGSLLAACK--VHRNIMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 562 -----~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~ 593 (705)
.+..++.++. ..+++++|...|+++.+++|..
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2333444443 3455667777776666666644
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=6.9e-09 Score=99.68 Aligned_cols=167 Identities=13% Similarity=0.063 Sum_probs=118.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC--C----ChhHHHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCC
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVE--R----DWVSWNAMIVGCAQ--------NGYGTEALGLFKKMLLCGEKPD 491 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~ 491 (705)
...+..+..+|.+.|++++|...|++..+ | ....+..+..++.. .|++++|+..|+++++ ..|+
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~ 129 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPN 129 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcC
Confidence 67888899999999999999999998863 2 23467778888888 9999999999999998 4566
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHH
Q 005265 492 HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSL 566 (705)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l 566 (705)
..... .+...+..+... -...+..+...|.+.|++++|+..|+++ ...|+ ...+..+
T Consensus 130 ~~~~~-------------~a~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 191 (261)
T 3qky_A 130 HELVD-------------DATQKIRELRAK-----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGA 191 (261)
T ss_dssp CTTHH-------------HHHHHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred chhHH-------------HHHHHHHHHHHH-----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 53211 111111111110 0123556778888999999999998887 22333 4466777
Q ss_pred HHHHHhc----------CCHHHHHHHHHHHHhhCCCCCc---hHHHHHHHHHhcCChhH
Q 005265 567 LAACKVH----------RNIMLGEYVAKKLLEIEPSNSG---PYVLLSNMYAELGRWGE 612 (705)
Q Consensus 567 ~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~ 612 (705)
..++... |++++|...++++++..|+++. +...+..++...|++++
T Consensus 192 ~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 192 MRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 7777655 8999999999999999999864 34455555555555443
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=2e-09 Score=105.35 Aligned_cols=187 Identities=6% Similarity=-0.042 Sum_probs=136.6
Q ss_pred HHHHHhcCCHHHHHHHHHccCCC-----C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-------hhhHH
Q 005265 433 IDMYMKCGSVEDGCRIFETMVER-----D----WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-------HVTMI 496 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~ 496 (705)
...|...|++++|...|.+...- + ..+|+.+...|...|++++|+..|++.++. .|+ ..++.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FTHRGQFRRGANFKF 121 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHH
Confidence 45677889999999888876421 1 458899999999999999999999998873 221 24678
Q ss_pred HHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---H-----HH
Q 005265 497 GVLCACSHA-GLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD---A-----VI 562 (705)
Q Consensus 497 ~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~ 562 (705)
.+...+... |++++|+..|++..+...-..+ ..++..+...|.+.|++++|+..|++. ...|+ . ..
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 888889986 9999999999988754211111 356888899999999999999999987 22222 1 15
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch-----HHHHHHHHH--hcCChhHHHHHHHHHH
Q 005265 563 WGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP-----YVLLSNMYA--ELGRWGEVVRVRKLMR 621 (705)
Q Consensus 563 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~ 621 (705)
|..+..++...|++++|...++++++++|+.... +..++..+. ..+++++|++.++++.
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 6777788889999999999999999999876543 344556554 4567888888775543
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=5.8e-10 Score=96.70 Aligned_cols=138 Identities=8% Similarity=-0.036 Sum_probs=91.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCh
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCL 544 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 544 (705)
+...|++++|+..+++... ..|+. ..+..+...|...|++++|++.|++..+. .|+ ...|..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCch
Confidence 3344555666666655544 23332 34455566666666666666666666533 343 66667777777777777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 545 DEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYV-AKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 545 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
++|+..|++. .+.| +..+|..+...+...|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777665 3445 466777888888888888765554 588889999998888888888888775
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=3.1e-08 Score=94.67 Aligned_cols=174 Identities=10% Similarity=-0.024 Sum_probs=121.5
Q ss_pred HHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005265 445 GCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSK 520 (705)
Q Consensus 445 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (705)
|+..|++... ++..++..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666766542 3455556777788888888888888888776543233 34677777888888888888888888854
Q ss_pred hcCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q 005265 521 EHGLAP-----LKDHYTCMVDL--LGRAG--CLDEAKTLIEAM-PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI- 589 (705)
Q Consensus 521 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 589 (705)
. .| +..+...|..+ ....| +..+|..+|+++ ...|+..+-..++.++.+.|++++|++.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 55 24444444444 33334 888888888888 33465344444455788888888888888877765
Q ss_pred ---------CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 590 ---------EPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 590 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+|+++.++..++.+....|+ +|.++++++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 47788888788878777887 788888888753
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=1.6e-08 Score=94.62 Aligned_cols=181 Identities=12% Similarity=0.022 Sum_probs=122.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----h
Q 005265 425 DIFVGNSLIDMYMKCGSVEDGCRIFETMVE--RD----WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHV----T 494 (705)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~ 494 (705)
+...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|...|++++|+..|+++++ ..|+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHH
Confidence 344555667778888899999888888763 32 24677788888888899999999888887 445543 3
Q ss_pred HHHHHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005265 495 MIGVLCACSH------------------AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMP 555 (705)
Q Consensus 495 ~~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 555 (705)
+..+..++.. .|++++|...|+.+.+. .|+ ...+.+...+. ......
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~------- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL------- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH-------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH-------
Confidence 3333334432 45666777777666543 333 22222111100 000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 556 MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS---GPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 556 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
......+...+...|++++|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113455668899999999999999999999976 4688999999999999999999999887653
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.99 E-value=1.6e-09 Score=93.84 Aligned_cols=122 Identities=12% Similarity=-0.012 Sum_probs=101.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005265 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHR 574 (705)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 574 (705)
|...+...|++++|+..++... ...|+ ...+-.+..+|.+.|++++|++.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445667889999999998764 34555 556677899999999999999999988 4555 6788999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHH-HHHHHh
Q 005265 575 NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRV-RKLMRK 622 (705)
Q Consensus 575 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~ 622 (705)
++++|...|+++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 577663
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.97 E-value=2.1e-08 Score=97.25 Aligned_cols=206 Identities=11% Similarity=0.062 Sum_probs=139.9
Q ss_pred chhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCC-CCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC--------
Q 005265 384 THYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFL-SGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE-------- 454 (705)
Q Consensus 384 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------- 454 (705)
...++..+...+...|+++.|...+..+.+...... ...+....++..+...|...|++++|...|++...
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 345566667777777777777777777665410000 00034567889999999999999999999988752
Q ss_pred --C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhc--
Q 005265 455 --R-DWVSWNAMIVGCAQNGYGTEALGLFKKMLLC------GEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEH-- 522 (705)
Q Consensus 455 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-- 522 (705)
+ ...+|..+...|...|++++|...|+++.+. +-.|+. .++..+...+...|++++|..+++.+.+..
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 3457888999999999999999999999874 113433 478888899999999999999999887531
Q ss_pred ----CCCCC-hhHHHHHHHHHHhcC------ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 523 ----GLAPL-KDHYTCMVDLLGRAG------CLDEAKTLIEAMP-MQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 523 ----~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
...+. ...+..+...+...+ .+.++...++... ..| ...++..+...+...|++++|...+++++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11232 334444444444333 3455555555553 223 3457788888899999999999999999875
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=1.8e-08 Score=98.01 Aligned_cols=176 Identities=10% Similarity=-0.040 Sum_probs=142.4
Q ss_pred HHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHH
Q 005265 442 VEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSK 520 (705)
Q Consensus 442 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (705)
.+.....+......+...+..+...+...|++++|...|++.++ ..|+. ..+..+...+...|++++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 34445555555555667778888889999999999999999998 56765 5788888899999999999999998864
Q ss_pred hcCCCCChhHHHHH-HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--Cc
Q 005265 521 EHGLAPLKDHYTCM-VDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN--SG 595 (705)
Q Consensus 521 ~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~ 595 (705)
. .|+....... ...+.+.|+.++|...+++. ...| +...+..+...+...|++++|...++++++.+|++ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 5664433332 33467788888898888876 3344 67789999999999999999999999999999998 78
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
++..++.+|...|+.++|...+++...
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 899999999999999999999887653
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.94 E-value=2.3e-08 Score=84.41 Aligned_cols=124 Identities=17% Similarity=0.169 Sum_probs=76.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC
Q 005265 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-P-MQPDAVIWGSLLAACKVHRN 575 (705)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~ 575 (705)
+...+...|++++|..+++.+.+. . +.+...+..+...+...|++++|...++++ . .+.+...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 333444444444444444444332 1 112344444555555555555555555554 1 12345566667777777788
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 576 IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 576 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+++|.+.++++++..|.+...+..++.++...|++++|...++++.+.
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888888888888877777778888888888888888888777653
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=2.4e-09 Score=117.83 Aligned_cols=167 Identities=8% Similarity=-0.113 Sum_probs=143.5
Q ss_pred HhcCCHHHHHHHHHccC-----------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhc
Q 005265 437 MKCGSVEDGCRIFETMV-----------ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSH 504 (705)
Q Consensus 437 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~ 504 (705)
...|++++|++.|++.. ..+...|..+...|...|++++|+..|+++++ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 77899999999998876 34667899999999999999999999999998 55654 578888889999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005265 505 AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEY 581 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 581 (705)
.|++++|.+.|+++.+. .|+ ...+..+..+|.+.|++++ ++.|+++ ...| +...|..+..++...|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999988754 564 7888999999999999999 9999887 4455 57789999999999999999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 582 VAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 582 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
.|+++++++|++..++..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999877665
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=8.7e-08 Score=91.55 Aligned_cols=179 Identities=9% Similarity=0.064 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-----ChhHHHHHHHHHHHcCChHHHHH
Q 005265 404 GRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER-----DWVSWNAMIVGCAQNGYGTEALG 478 (705)
Q Consensus 404 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~ 478 (705)
+...++.....+ .++......+..++...|++++|++++.+.... +...+-.++..+.+.|+.+.|.+
T Consensus 85 a~~~l~~l~~~~-------~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 NIEELENLLKDK-------QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp CCHHHHHTTTTS-------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 445555554443 234445567778888889999999988887432 45567777888999999999999
Q ss_pred HHHHHHHCCCCC-----ChhhHHHHHHHH--hccC--cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 005265 479 LFKKMLLCGEKP-----DHVTMIGVLCAC--SHAG--LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKT 549 (705)
Q Consensus 479 ~~~~m~~~g~~p-----~~~~~~~ll~~~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 549 (705)
.+++|.+ ..| +..+...+..++ ...| ++.+|..+|+++... .|+...-..+..++.+.|++++|.+
T Consensus 158 ~l~~~~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 158 IFDNYTN--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHh--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHH
Confidence 9999988 567 355666666553 3334 899999999998644 3553344445558889999999999
Q ss_pred HHHhC-CC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 005265 550 LIEAM-PM----------QP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 550 ~~~~~-~~----------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 596 (705)
.++.+ .. .| |+.++..++......|+ +|.++++++.+..|+++.+
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 98765 21 24 55566577666666776 8899999999999999753
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.92 E-value=7.8e-09 Score=89.02 Aligned_cols=101 Identities=9% Similarity=0.014 Sum_probs=91.1
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 005265 523 GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVL 599 (705)
Q Consensus 523 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 599 (705)
.+.|+ ...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 55665 667888888999999999999999988 4455 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 005265 600 LSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
++.+|.+.|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999864
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.92 E-value=9.3e-09 Score=85.83 Aligned_cols=99 Identities=9% Similarity=0.088 Sum_probs=77.9
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 005265 524 LAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600 (705)
Q Consensus 524 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 600 (705)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4555 556667777888888888888888776 3344 567777888888888888888888888888888888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 005265 601 SNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 601 ~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888888774
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=9.9e-08 Score=88.07 Aligned_cols=173 Identities=10% Similarity=-0.064 Sum_probs=142.6
Q ss_pred HHHHHHHccC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC----cHHHHHHHHHHh
Q 005265 444 DGCRIFETMV-ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAG----LVEEGRKYFSSM 518 (705)
Q Consensus 444 ~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~ 518 (705)
+|.+.|++.. ..++.++..+...|...+++++|+++|++..+.| +...+..+...|.. + ++++|..+|+..
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4555665554 3478888899999999999999999999999865 55667777777777 6 899999999988
Q ss_pred HHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 005265 519 SKEHGLAPLKDHYTCMVDLLGR----AGCLDEAKTLIEAM-PMQPD---AVIWGSLLAACKV----HRNIMLGEYVAKKL 586 (705)
Q Consensus 519 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 586 (705)
.+. -+...+..|..+|.. .+++++|.+.|++. ...|+ +..+..|...|.. .+++++|...|+++
T Consensus 80 ~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 543 357778888888887 88999999999998 44443 7888889888888 78999999999999
Q ss_pred HhhCCCCCchHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 005265 587 LEIEPSNSGPYVLLSNMYAEL-G-----RWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 587 ~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 625 (705)
.+. |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 998 66777899999999864 3 89999999999987764
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=8.6e-08 Score=80.83 Aligned_cols=132 Identities=17% Similarity=0.171 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLL 538 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 538 (705)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46667777888888888888888887742 2244567777777888888888888888876541 23466777888888
Q ss_pred HhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 005265 539 GRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 539 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 593 (705)
.+.|++++|.+.++++ .. +.+..++..+...+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 8889999998888876 22 3357788888888999999999999999999888863
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=3.7e-08 Score=87.97 Aligned_cols=76 Identities=8% Similarity=-0.004 Sum_probs=61.5
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 547 AKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN--SGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 547 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
|+..+++. ...| +...+..+...+...|++++|...++++++.+|+. ...+..++.++...|+.++|...+++...
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 45555554 2345 57788888888999999999999999999999875 45889999999999999999999987763
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.81 E-value=6e-08 Score=89.28 Aligned_cols=159 Identities=8% Similarity=0.012 Sum_probs=113.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCC---ChhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCC
Q 005265 429 GNSLIDMYMKCGSVEDGCRIFETMVER---DWVSWNA----------------MIVGCAQNGYGTEALGLFKKMLLCGEK 489 (705)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~ 489 (705)
.......+...|++++|...|++.... +...|.. +...|...|++++|+..|++.++ ..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KA 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HC
Confidence 334455677889999999999887643 3445666 78888888888899888888888 55
Q ss_pred CCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC--hHHHHHHHHhCCCCCCH--HHH
Q 005265 490 PDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGC--LDEAKTLIEAMPMQPDA--VIW 563 (705)
Q Consensus 490 p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~ 563 (705)
|+. ..+..+..++...|++++|...|+++.+. .|+ ...+..+..+|...|+ .+.+...++... .|++ ..+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~ 160 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYAR 160 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHH
Confidence 654 57778888888888888888888888653 455 7778888887766554 345556666653 3333 344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 593 (705)
.....++...|++++|...|++++++.|+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 445555667788888888888888888864
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.81 E-value=4.2e-08 Score=105.99 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=124.8
Q ss_pred cCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHH
Q 005265 439 CGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKY 514 (705)
Q Consensus 439 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 514 (705)
.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998864 3677899999999999999999999999998 5665 46888889999999999999999
Q ss_pred HHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 005265 515 FSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVH---RNIMLGEYVAKKLLE 588 (705)
Q Consensus 515 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 588 (705)
+++..+. .|+ ...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998764 454 788999999999999999999999987 3344 577888899999999 999999999999999
Q ss_pred hCCCCCchHHHHH
Q 005265 589 IEPSNSGPYVLLS 601 (705)
Q Consensus 589 ~~p~~~~~~~~l~ 601 (705)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988887776
No 106
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.81 E-value=2.5e-08 Score=86.02 Aligned_cols=101 Identities=10% Similarity=0.002 Sum_probs=88.4
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 005265 523 GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVL 599 (705)
Q Consensus 523 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 599 (705)
.+.|+ ...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...|+++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 44554 667777888899999999999999887 3344 77888899999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 005265 600 LSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
++.+|...|++++|.+.+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998753
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=4.1e-08 Score=96.68 Aligned_cols=186 Identities=11% Similarity=-0.008 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCCC-----C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--h
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVER-----D----WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGE---KPD--H 492 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~ 492 (705)
..|+.....|...|++++|...|.+...- + ..+|+.+...|...|++++|+..|++.++.-. .|. .
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35556666777777777777777665421 1 33667777777777778888777777665211 111 2
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----H
Q 005265 493 VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAM-PM---QPD----A 560 (705)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~ 560 (705)
.++..+...+.. |++++|+..|++......-..+ ..++..+..+|.+.|++++|+..|++. .+ .++ .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 356666666766 7777777777766543211111 345666777777777777777777765 11 111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH-----HHHHHHHHhcCChhHHHH
Q 005265 561 VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPY-----VLLSNMYAELGRWGEVVR 615 (705)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-----~~l~~~~~~~g~~~~A~~ 615 (705)
..+..+...+...|++++|...+++++ +.|...... ..++..+ ..|+.+.+.+
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 244555555666677777777777777 777665542 2333333 4555554444
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.78 E-value=2.7e-07 Score=101.50 Aligned_cols=187 Identities=12% Similarity=0.071 Sum_probs=147.6
Q ss_pred hhcccHHHHHHHHHHHH--------HhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHH
Q 005265 396 ANLADLQLGRQAHTHVV--------KHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMI 464 (705)
Q Consensus 396 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 464 (705)
...|++++|.+.++.+. +.. +.+...+..+...|...|++++|...|++..+ .+...|..+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 474 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-------SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRA 474 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 66788888888888877 433 45678889999999999999999999998863 4778999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC
Q 005265 465 VGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAG 542 (705)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 542 (705)
.+|...|++++|++.|++.++ +.|+. ..+..+..++...|++++ .+.|+++.+. .|+ ...|..+..+|.+.|
T Consensus 475 ~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g 548 (681)
T 2pzi_A 475 VAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEG 548 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcC
Confidence 999999999999999999999 56765 578888999999999999 9999988754 455 788999999999999
Q ss_pred ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhhCCCCCc
Q 005265 543 CLDEAKTLIEAM-PMQPD-AVIWGSLLAACKVHRN-----IMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 543 ~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 595 (705)
++++|++.|+++ ...|+ ...|..+..++...++ .+...+..+...++.++++.
T Consensus 549 ~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 549 DRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp CHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred CHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999999999998 56776 4577777777766555 23344444444445555544
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=2e-07 Score=90.54 Aligned_cols=132 Identities=8% Similarity=-0.011 Sum_probs=113.1
Q ss_pred CCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 005265 490 PDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSL 566 (705)
Q Consensus 490 p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 566 (705)
|+. ..+..+...+...|++++|...|+.+.+. .|+ ...+..+..+|.+.|++++|...++++ ...|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 444 56777888889999999999999998764 565 788999999999999999999999998 456776654444
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 567 LAA-CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 567 ~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
... +...++.+.|...++++++.+|+++..+..++.+|...|++++|...++++.+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 443 7788889999999999999999999999999999999999999999999998643
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.74 E-value=6.6e-06 Score=86.17 Aligned_cols=102 Identities=7% Similarity=-0.023 Sum_probs=67.5
Q ss_pred CC-CcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC--CCcchHHHHHHHHHhcCC-hhHHHHH
Q 005265 164 SV-DFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE--RNIVSWNSLITCYEQNGP-ASDALEV 239 (705)
Q Consensus 164 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~ 239 (705)
.| +++.|+.+++.++.. -|. |+++.+..+|++... |++..|...+....+.++ .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 377778888777665 222 889999999998775 888888888887777663 4566777
Q ss_pred HHHHHHC-CCCC-CHhHHHHHHHHHH----ccCChHHHHHHHHHHHHc
Q 005265 240 FVRMMAS-GIEP-DEVTLASVVSACA----SLAAFKEGLQIHARLMRC 281 (705)
Q Consensus 240 ~~~m~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~ 281 (705)
|+..... |..| +...|...+..+. ..++.+.+..+|+.++..
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 8877653 5434 4555665555443 235677888888888873
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=1.7e-06 Score=84.38 Aligned_cols=195 Identities=10% Similarity=-0.027 Sum_probs=138.7
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhH---HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChh----h
Q 005265 423 ESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVS---WNAMIVGCAQNGYGTEALGLFKKMLLCG-EKPDHV----T 494 (705)
Q Consensus 423 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~ 494 (705)
.|+..+...+...+.-.- ..++..-...+... +...+..+...|++++|..++++..+.. ..|+.. .
T Consensus 43 ~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~ 117 (293)
T 3u3w_A 43 YPSMDILQGIAAKLQIPI-----IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQW 117 (293)
T ss_dssp CCCHHHHHHHHHHHTCCT-----HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcCH-----HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHH
Confidence 567766666666554221 12333333333333 3334677889999999999999998742 122221 2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-----C--C-CC-HH
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAMP-----M--Q-PD-AV 561 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~--~-p~-~~ 561 (705)
+..+...+...|++++|+..++.+.+...-.++ ..+++.+...|...|++++|...|+++- . . |. ..
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 334666677888999999999998763222233 3368999999999999999999988761 1 1 22 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN------SGPYVLLSNMYAELGR-WGEVVRVRKLMRK 622 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 622 (705)
++..+...|...|++++|...+++++++.+.. ...|..++.+|.+.|+ +++|.+.+++...
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 77888999999999999999999999874332 4578999999999995 6999999998864
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.72 E-value=1.9e-07 Score=100.80 Aligned_cols=150 Identities=14% Similarity=0.028 Sum_probs=112.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHH
Q 005265 470 NGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEA 547 (705)
Q Consensus 470 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 547 (705)
.|++++|++.|++..+ ..|+ ...+..+...+...|++++|.+.+++..+ ..|+ ...+..+..+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4778899999999887 4565 45788888889999999999999998864 4555 77888999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc---CChhHHHHHHHHHHh
Q 005265 548 KTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL---GRWGEVVRVRKLMRK 622 (705)
Q Consensus 548 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 622 (705)
.+.+++. ...| +...|..+...+...|++++|.+.++++++.+|++...+..++.++... |++++|.+.+++..+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999887 3344 5778888888999999999999999999999999999999999999999 999999999988876
Q ss_pred CC
Q 005265 623 RG 624 (705)
Q Consensus 623 ~~ 624 (705)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 54
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.72 E-value=2.8e-07 Score=86.02 Aligned_cols=149 Identities=13% Similarity=-0.003 Sum_probs=106.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHccCC--C-Ch---hHHHHHHHHHHH------------------cCChHHHHHHHH
Q 005265 426 IFVGNSLIDMYMKCGSVEDGCRIFETMVE--R-DW---VSWNAMIVGCAQ------------------NGYGTEALGLFK 481 (705)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~------------------~g~~~~A~~~~~ 481 (705)
...+..+..+|.+.|++++|+..|+++.+ | +. .++..+..++.. .|++++|+..|+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 35778889999999999999999999863 3 22 245555555554 578999999999
Q ss_pred HHHHCCCCCChhh-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 005265 482 KMLLCGEKPDHVT-MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD 559 (705)
Q Consensus 482 ~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 559 (705)
++++ ..|+... ...... ...+...+ ......+...|.+.|++++|+..|+++ ...|+
T Consensus 121 ~~l~--~~P~~~~a~~a~~~----------l~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 121 KLVR--GYPNSQYTTDATKR----------LVFLKDRL---------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHT--TCTTCTTHHHHHHH----------HHHHHHHH---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHH--HCcCChhHHHHHHH----------HHHHHHHH---------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 9998 5677642 211110 00111111 112235677899999999999999987 33443
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 560 ----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 560 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
...+..+..++.+.|+.++|.+.++++....|++..
T Consensus 180 ~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 180 TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 246888888999999999999999999998888754
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.72 E-value=5e-07 Score=88.21 Aligned_cols=166 Identities=11% Similarity=-0.057 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--
Q 005265 457 WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-----VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGL--APL-- 527 (705)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~-- 527 (705)
...+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...++...+...- .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345556778889999999999999998885322111 12334555677889999999999987643211 122
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM----PMQPD-----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS------ 592 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------ 592 (705)
..+++.+...|...|++++|...|+++ ...|+ ..++..+...|...|++++|...+++++++.++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 458889999999999999999999876 11222 258888999999999999999999999987432
Q ss_pred CCchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 005265 593 NSGPYVLLSNMYAELGRWGEV-VRVRKLMRK 622 (705)
Q Consensus 593 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 622 (705)
...+|..++.+|.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 145688999999999999999 777887653
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.71 E-value=1.4e-07 Score=84.14 Aligned_cols=157 Identities=10% Similarity=-0.070 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-H
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCA-C 502 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~ 502 (705)
.....+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++... ..|+.......... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHH
Confidence 3455677888999999999999999874 3678899999999999999999999999877 44543322221111 1
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHH
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD---AVIWGSLLAACKVHRNIM 577 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~ 577 (705)
...+...+|...++...+. .|+ ...+..+..+|...|++++|...|+++ ...|+ ...+..+...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 1222233468888877654 565 888999999999999999999999987 55554 568899999999999999
Q ss_pred HHHHHHHHHHh
Q 005265 578 LGEYVAKKLLE 588 (705)
Q Consensus 578 ~a~~~~~~~~~ 588 (705)
+|...|++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999998864
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=2.7e-07 Score=85.18 Aligned_cols=125 Identities=13% Similarity=-0.024 Sum_probs=101.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAACKV 572 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~ 572 (705)
+..+...+...|++++|...|+.. +.|+...+..+..+|.+.|++++|++.|++. ... .+...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 344555667778888888888755 3556778888888888888888888888876 223 367788888888999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCC----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 573 HRNIMLGEYVAKKLLEIEPSNS----------------GPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 573 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
.|++++|...++++++..|.+. .++..++.+|.+.|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888877 789999999999999999999999988643
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.71 E-value=1.5e-07 Score=78.35 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=90.3
Q ss_pred CCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 005265 488 EKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIW 563 (705)
Q Consensus 488 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 563 (705)
+.|+. ..+......+.+.|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.|++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44554 35666777788888888888888877653 344 777888888888888888888888876 3444 57789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNM 603 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 603 (705)
..+..++...|++++|.+.|+++++++|++..++..|+.+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999998888777665
No 118
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.69 E-value=2.4e-07 Score=79.13 Aligned_cols=101 Identities=14% Similarity=-0.026 Sum_probs=87.1
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 005265 523 GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVL 599 (705)
Q Consensus 523 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 599 (705)
.+.|+ ...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 34554 556667778888999999999999887 3344 67788889999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 005265 600 LSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 600 l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
++.+|...|++++|.+.+++..+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998753
No 119
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.67 E-value=7.2e-07 Score=81.95 Aligned_cols=136 Identities=11% Similarity=0.026 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHh
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACS 503 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 503 (705)
....+..+|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++.++ +.|+. .++..+..++.
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 34458999999999999999999876 34788999999999999999999999999999 66765 57777777776
Q ss_pred ccCc--HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005265 504 HAGL--VEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPDAVIWGSLLA 568 (705)
Q Consensus 504 ~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 568 (705)
..|. .+.+...++... ...|....+..+..++...|++++|+..|++. ...|+......+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5554 344555555442 22333334455666778899999999999987 77898765554443
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=7.7e-06 Score=85.64 Aligned_cols=373 Identities=8% Similarity=-0.053 Sum_probs=176.5
Q ss_pred ccC-ChhhHHHHHhccCCCChhhHHHHHHHHHhcCChhHHHHHHhcCCC--CCcccHHHHHHHHHhCCC-hHHHHHHHHH
Q 005265 66 KCG-CLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPE--RDQCSWNSMVSGFAQHDR-FSEALGYFVK 141 (705)
Q Consensus 66 ~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~a~~~~~~ 141 (705)
+.| +++.|+.+|+.+.. .+-. |+++.+..+|++... |++..|..-+.-..+.+. .+....+|+.
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 346 37788888777643 1111 889999999987654 677788877777766653 3456667777
Q ss_pred hHhC-CCCC-ChhhHHHHHHHhhC----CCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhc---CCChHHHHHHHhcc
Q 005265 142 MHSE-NFAL-SEYSFGSALSACAG----SVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGK---CGRVSCARRVFDGM 212 (705)
Q Consensus 142 m~~~-g~~p-~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 212 (705)
.... |..| +...|...+..+.. .++++.+..+|+..+.. ++. .+..+-..|.. ......+.++..+
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~- 148 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITGKKIVGD- 148 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHHHHHHHH-
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccHHHHHHH-
Confidence 6653 4333 55667777766543 34577788888888874 211 11222222221 1111112211111
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHcc--CC-----hHHHHHHHHHHHHcCCCC
Q 005265 213 RERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASL--AA-----FKEGLQIHARLMRCEKLR 285 (705)
Q Consensus 213 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~ 285 (705)
. .+.+..|..+++.+...--..+...|...+.--... +- .+.+..+|++++.. .+
T Consensus 149 --------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p 210 (493)
T 2uy1_A 149 --------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FY 210 (493)
T ss_dssp --------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TT
T ss_pred --------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CC
Confidence 0 011122222222222100000111222222211110 00 12344455555554 23
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHH-HHHHHHhcC------------CCCeeh
Q 005265 286 NDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKS-ARLMFTKML------------ERNVVS 352 (705)
Q Consensus 286 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~~~------------~~~~~~ 352 (705)
.+..+|...+..+.+.|+.+.|..+|++.... +.... +--.|......++ ...+.+... ......
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~-l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF-LSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH-HHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH-HHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence 34455555555555555555555555433211 11100 0001111100000 001111100 001234
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhh-cccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHH
Q 005265 353 WNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACAN-LADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNS 431 (705)
Q Consensus 353 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (705)
|-..+....+.+..+.|..+|.+. ... .++...|......-.. .++.+.|+.+|+...+... .++..+..
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-------~~~~~~~~ 359 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-------DSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-------TCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-------CCHHHHHH
Confidence 555566665666777777777777 211 1222223211111111 2257778888877776542 23445556
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005265 432 LIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLL 485 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (705)
.++...+.|+.+.|..+|+++. +....|...+.--...|+.+.+..+++++..
T Consensus 360 yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777777777788888887773 3566677776666667777777777766654
No 121
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.64 E-value=3e-07 Score=76.67 Aligned_cols=96 Identities=13% Similarity=0.041 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445667778888889999999888877 3344 67888889999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005265 606 ELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~~~ 623 (705)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999998753
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.62 E-value=6.3e-07 Score=88.10 Aligned_cols=196 Identities=7% Similarity=-0.086 Sum_probs=148.9
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHH
Q 005265 398 LADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEAL 477 (705)
Q Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 477 (705)
.|++++|.+++.+..+... .. .+...++++.|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-------~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-------TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-------cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHH
Confidence 4667777777777765432 11 111158899999988764 56788899999999
Q ss_pred HHHHHHHHC----CCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--hhHHHHHHHHHHhcCChHHHH
Q 005265 478 GLFKKMLLC----GEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGL--APL--KDHYTCMVDLLGRAGCLDEAK 548 (705)
Q Consensus 478 ~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~l~~~~~~~g~~~~A~ 548 (705)
..|.+..+. |-.+. ..+|..+...|...|++++|+..|++...-+.- .|. ..++..+..+|.+ |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999988763 11111 247888889999999999999999987654211 122 4678889999999 9999999
Q ss_pred HHHHhC-CCC---CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC------chHHHHHHHHHhcCChhHHH
Q 005265 549 TLIEAM-PMQ---PD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS------GPYVLLSNMYAELGRWGEVV 614 (705)
Q Consensus 549 ~~~~~~-~~~---p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~ 614 (705)
+.|++. .+. .+ ..++..+...+...|++++|...+++++++.|.+. ..+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999886 111 11 45788888999999999999999999999866543 25777888899999999999
Q ss_pred HHHHHHH
Q 005265 615 RVRKLMR 621 (705)
Q Consensus 615 ~~~~~~~ 621 (705)
..+++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999987
No 123
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.60 E-value=5.4e-06 Score=80.13 Aligned_cols=218 Identities=12% Similarity=0.062 Sum_probs=99.0
Q ss_pred hHHHHHHHHHhhhCCCCcchhhH-HHHHHHHhhcc--cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHH----Hh
Q 005265 366 NEEALGLFRLLKRESVCPTHYTF-GNLLNACANLA--DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMY----MK 438 (705)
Q Consensus 366 ~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~ 438 (705)
.++|+.++..++. +.|+..|. +.--.++...+ +++++...+..+..... .+..+|+.-...+ ..
T Consensus 49 s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-------k~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 49 SERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-------KNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp SHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-------TCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-------ccHHHHHHHHHHHHHHHHh
Confidence 3566666666665 34555553 22223333444 55666666665555542 3333343332222 22
Q ss_pred c---CCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCc--
Q 005265 439 C---GSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGT--EALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGL-- 507 (705)
Q Consensus 439 ~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~-- 507 (705)
. +++++++++++.+. .+|..+|+--...+.+.|.++ ++++.++++++. .| |...|+.-...+...|.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccc
Confidence 3 45555555555554 224445554444445555555 555555555552 22 22344433333444443
Q ss_pred ----HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCH
Q 005265 508 ----VEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDE-AKTLIEAM-PM----QPDAVIWGSLLAACKVHRNI 576 (705)
Q Consensus 508 ----~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~ 576 (705)
++++++.++.+... .| +...|+.+..++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.
T Consensus 198 ~~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp CHHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred hhhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 45555555544432 22 24444444444444444222 22333333 11 12344444444444444555
Q ss_pred HHHHHHHHHHHh-hCCCCCchH
Q 005265 577 MLGEYVAKKLLE-IEPSNSGPY 597 (705)
Q Consensus 577 ~~a~~~~~~~~~-~~p~~~~~~ 597 (705)
++|.++++.+.+ .+|-....|
T Consensus 275 ~~A~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 275 NESRTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHHhccChHHHHHH
Confidence 555555555443 344444333
No 124
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.60 E-value=3.1e-05 Score=74.75 Aligned_cols=167 Identities=15% Similarity=0.183 Sum_probs=126.3
Q ss_pred cCCCChhHHHHHHHHH----HHc---CChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHH--HHHHHHHHhHHh
Q 005265 452 MVERDWVSWNAMIVGC----AQN---GYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVE--EGRKYFSSMSKE 521 (705)
Q Consensus 452 ~~~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~ 521 (705)
...++..+|+.-...+ ... +++++++++++++++ ..| |..+|..-...+.+.|.++ +++++++.+.+.
T Consensus 98 ~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 3455677777655555 455 788999999999998 445 4457777777777788877 899999988765
Q ss_pred cCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhC--
Q 005265 522 HGLAPLKDHYTCMVDLLGRAGC------LDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIML-GEYVAKKLLEIE-- 590 (705)
Q Consensus 522 ~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~-- 590 (705)
. .-+...|+.-..++.+.|+ ++++++.++++ ...| |...|+.+...+.+.|+... ....++++++++
T Consensus 176 d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T 3dra_A 176 D--LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD 253 (306)
T ss_dssp C--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT
T ss_pred C--CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC
Confidence 1 2346777777777777776 88899988876 3344 78888888888888777444 556777777765
Q ss_pred -CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 591 -PSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 591 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
|.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 254 ~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 254 QVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 77888899999999999999999999999875
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.59 E-value=3.6e-07 Score=86.12 Aligned_cols=181 Identities=9% Similarity=0.001 Sum_probs=140.2
Q ss_pred hcCCHHHHHHHHHccCC---CChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCChh--------------
Q 005265 438 KCGSVEDGCRIFETMVE---RDWVSWNAM-------IVGCAQNGYGTEALGLFKKMLLCGEKPDHV-------------- 493 (705)
Q Consensus 438 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 493 (705)
..++...|.+.|.++.. .....|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999999863 356789888 4666666666667666666554 444432
Q ss_pred --------hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----H
Q 005265 494 --------TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDA----V 561 (705)
Q Consensus 494 --------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 561 (705)
....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123356678889999999999997753 3565436677777999999999999999987544443 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIE--PS-NSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++.+.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67778888999999999999999998643 54 4457889999999999999999999999864
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=9.3e-07 Score=77.65 Aligned_cols=126 Identities=9% Similarity=-0.021 Sum_probs=92.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKV 572 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 572 (705)
+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|.+.+++. ...| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4445555666666666666666665431 223566667777777777777777777765 2233 56788888888999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHH--HHhcCChhHHHHHHHHHHh
Q 005265 573 HRNIMLGEYVAKKLLEIEPSNSGPYVLLSNM--YAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 573 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 622 (705)
.|++++|...++++++..|.+...+..+..+ +.+.|++++|.+.+++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999988877554444 8888999999999987753
No 127
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.58 E-value=2.8e-06 Score=78.16 Aligned_cols=172 Identities=9% Similarity=-0.098 Sum_probs=139.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC-ChhHHHHHHHHHHHcC----ChHHHHH
Q 005265 404 GRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER-DWVSWNAMIVGCAQNG----YGTEALG 478 (705)
Q Consensus 404 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g----~~~~A~~ 478 (705)
|.+.+....+. .++..+..|..+|...+++++|.+.|++..+. +..++..|...|.. + ++++|++
T Consensus 5 A~~~~~~aa~~---------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 5 PGSQYQQQAEA---------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp TTHHHHHHHHT---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred HHHHHHHHHHC---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 45566666664 35678888999999999999999999998754 77888888888887 6 8999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh----cCChHHH
Q 005265 479 LFKKMLLCGEKPDHVTMIGVLCACSH----AGLVEEGRKYFSSMSKEHGLAPL---KDHYTCMVDLLGR----AGCLDEA 547 (705)
Q Consensus 479 ~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A 547 (705)
+|++..+.| +...+..+...+.. .+++++|..+|+...+ ..|+ +..+..|..+|.. .+++++|
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 999998865 55677777777877 8899999999998753 3453 7888899999998 8899999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhCC
Q 005265 548 KTLIEAM-PMQPDAVIWGSLLAACKVH-R-----NIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 548 ~~~~~~~-~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p 591 (705)
...|++. ...++...+..|...|... | ++++|...++++.+...
T Consensus 149 ~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999998 3335666777887777643 3 89999999999998754
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.58 E-value=1.9e-06 Score=79.37 Aligned_cols=145 Identities=8% Similarity=-0.120 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccC
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAG 506 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 506 (705)
.+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++.++. .|+ ...+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence 34556667777888888888888877777777888888888888888888888877773 343 346666777777777
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005265 507 LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQP-DAVIWGSLLAACKVHRNIMLGEYVAKK 585 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 585 (705)
++++|...|+...+...-.+... +...| ....| ....+..+..++...|++++|...+++
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777777776654311111000 00000 01223 235777788888899999999999999
Q ss_pred HHhhCCCC
Q 005265 586 LLEIEPSN 593 (705)
Q Consensus 586 ~~~~~p~~ 593 (705)
++++.|++
T Consensus 147 al~~~p~~ 154 (213)
T 1hh8_A 147 ATSMKSEP 154 (213)
T ss_dssp HHTTCCSG
T ss_pred HHHcCccc
Confidence 99998876
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=1.2e-07 Score=91.71 Aligned_cols=191 Identities=6% Similarity=-0.088 Sum_probs=138.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHH
Q 005265 425 DIFVGNSLIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLC 500 (705)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~ 500 (705)
+...+..+...+.+.|++++|...|++.. ..+...|..+...|...|++++|+..+++.++ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45677888899999999999999999875 33788899999999999999999999999988 56654 57888889
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPLK-DHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLG 579 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 579 (705)
++...|++++|...|+...+. .|+. ..+...+....+..+...... .......++......+ ..+ ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 999999999999999987654 2321 111112222222111111111 2222333444443333 333 36899999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 005265 580 EYVAKKLLEIEPSNSGPYVLLSNMYAEL-GRWGEVVRVRKLMRKR 623 (705)
Q Consensus 580 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 623 (705)
.+.++++++.+|++......+...+.+. +++++|.++|+++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998877777777777776 7899999999988653
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=1.2e-06 Score=72.33 Aligned_cols=114 Identities=18% Similarity=0.155 Sum_probs=79.8
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 005265 493 VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAAC 570 (705)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 570 (705)
..+..+...+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|...++++ .. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 345555556666666666666666665431 223556666677777777777777777665 22 33566777888888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELG 608 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 608 (705)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999999988888888888776654
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.54 E-value=9e-07 Score=74.31 Aligned_cols=113 Identities=12% Similarity=0.001 Sum_probs=71.8
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAAC 570 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 570 (705)
.+..+...+...|++++|...|+...+ ..| +...+..+..+|...|++++|++.++++ ... .+...|..+...+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 344444455555555555555554432 223 2445555555566666666666665554 222 2466777777778
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGR 609 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 609 (705)
...|++++|...++++++.+|.+...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888877664
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=1.1e-06 Score=82.87 Aligned_cols=192 Identities=10% Similarity=-0.073 Sum_probs=140.2
Q ss_pred hcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHH-------HHHHHhcCCHHHHHHHHHccCC--C-------C----
Q 005265 397 NLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSL-------IDMYMKCGSVEDGCRIFETMVE--R-------D---- 456 (705)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~--~-------~---- 456 (705)
..++...|.+.|..+.+.. +.....|..+ ...+.+.++..+++..+.+-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred cCCCHHHHHHHHHHHHHhC-------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCc
Confidence 4677788888888888776 3566677766 4555555556666666555443 1 1
Q ss_pred -----------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 005265 457 -----------WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLA 525 (705)
Q Consensus 457 -----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 525 (705)
...+-.....+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+...+. . .
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d 166 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-D 166 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-C
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-C
Confidence 11344567788899999999999998877 3466555556666888999999999999855321 1 1
Q ss_pred CC--hhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 005265 526 PL--KDHYTCMVDLLGRAGCLDEAKTLIEAMP---MQPD--AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYV 598 (705)
Q Consensus 526 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 598 (705)
|. ...+..+..++.+.|++++|+..|++.. ..|. ...+.....++.+.|+.++|...|+++...+|+ ..+..
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 21 3467788999999999999999999882 2253 346777888899999999999999999999998 65554
Q ss_pred HH
Q 005265 599 LL 600 (705)
Q Consensus 599 ~l 600 (705)
.|
T Consensus 246 aL 247 (282)
T 4f3v_A 246 AL 247 (282)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=1.3e-06 Score=72.92 Aligned_cols=116 Identities=13% Similarity=0.022 Sum_probs=84.9
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACK 571 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 571 (705)
.+..+...+...|++++|...++...... +.+...+..+...+...|++++|.+.+++. ...| +...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 45555556666666666666666665431 223566666777777777777777777665 2233 4667888888899
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChh
Q 005265 572 VHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWG 611 (705)
Q Consensus 572 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 611 (705)
..|++++|...++++++..|++...+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999888999999998888763
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.53 E-value=7.2e-07 Score=88.78 Aligned_cols=161 Identities=14% Similarity=-0.008 Sum_probs=117.3
Q ss_pred CCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHH
Q 005265 440 GSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFS 516 (705)
Q Consensus 440 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 516 (705)
+++++|...|+.... .+...|..+...|.+.|++++|+..|++.++ +.|+...+ ..+.+.+.-.
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~~ 193 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQA 193 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHHH
Confidence 344455555544332 1455777788888888888888888888877 34443210 0011111100
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 517 SMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 517 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.....|..+..+|.+.|++++|+..++++ ...| +...|..+..++...|++++|...|+++++++|++.
T Consensus 194 ---------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 194 ---------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp ---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred ---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 01456788888889999999999988887 3344 677889999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 005265 595 GPYVLLSNMYAELGRWGEV-VRVRKLMRK 622 (705)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 622 (705)
.++..++.++.+.|++++| ...+++|..
T Consensus 265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 556777653
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=4.4e-07 Score=80.94 Aligned_cols=119 Identities=6% Similarity=0.056 Sum_probs=88.6
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--H
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAA-CKVHRNI--M 577 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--~ 577 (705)
...|++++|...++...+.. +.+...+..+..+|...|++++|...|+++ ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 45677777777777765541 224677777888888888888888888776 2233 56677777777 7788888 8
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 578 LGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 578 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+|...++++++.+|++...+..++.+|...|++++|...++++.+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999999999988888889999999999999999999888754
No 136
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=2.5e-05 Score=75.98 Aligned_cols=159 Identities=9% Similarity=-0.099 Sum_probs=120.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCC---Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----hhHH
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVER---DW------VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEK-PDH----VTMI 496 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~ 496 (705)
..+..+...|++++|...+++..+. +. ..+..+...+...|++++|+..|++..+.... ++. .+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999886532 11 13334666677788999999999999984322 222 2688
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhc----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHH
Q 005265 497 GVLCACSHAGLVEEGRKYFSSMSKEH----GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-------PMQPD-AVIW 563 (705)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 563 (705)
.+..+|...|++++|..+|+.+.+.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999999999887422 11222 447888999999999999999998876 12222 5688
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhh
Q 005265 564 GSLLAACKVHRN-IMLGEYVAKKLLEI 589 (705)
Q Consensus 564 ~~l~~~~~~~g~-~~~a~~~~~~~~~~ 589 (705)
..+..++...|+ +++|.+.+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 888888999994 69999999999875
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.49 E-value=1.2e-06 Score=75.23 Aligned_cols=104 Identities=9% Similarity=-0.008 Sum_probs=87.3
Q ss_pred CCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 005265 488 EKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIW 563 (705)
Q Consensus 488 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 563 (705)
+.|+. ..+..+...+...|++++|...|+.+.+. .|+ ...|..+..+|.+.|++++|+..|+++ .+.| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 45554 36777778888999999999999988754 554 888899999999999999999999987 4445 57788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
..+..++...|++++|...|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8999999999999999999999999998764
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.48 E-value=4.4e-07 Score=75.71 Aligned_cols=95 Identities=7% Similarity=0.020 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc-------hHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG-------PYV 598 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~ 598 (705)
...+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|++.++++++++|++.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345666788888888888888888876 4445 5778888888899999999999999999998877653 567
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 005265 599 LLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.++.++...|++++|++.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788888999999999999988764
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.48 E-value=3.1e-06 Score=82.52 Aligned_cols=163 Identities=9% Similarity=-0.135 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCC---CCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC---CC--h
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVE---RDW------VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEK---PD--H 492 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~ 492 (705)
..+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|+..+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567778888899999888875432 111 22344556677788999999999998863221 11 2
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CC------CC-C
Q 005265 493 VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-----KDHYTCMVDLLGRAGCLDEAKTLIEAM-PM------QP-D 559 (705)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~ 559 (705)
.+++.+...|...|++++|..+++++.+.....|+ ..++..+...|.+.|++++|++.+++. .+ .. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 37788888899999999999999988632111222 257888899999999999999998876 11 11 1
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHhh
Q 005265 560 AVIWGSLLAACKVHRNIMLG-EYVAKKLLEI 589 (705)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 589 (705)
..++..+...+...|++++| ...+++++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788888889999999999 7888988765
No 140
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.47 E-value=8.8e-07 Score=71.65 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQ-PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS--NSGPYVLLSNM 603 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 603 (705)
...+..+...+.+.|++++|...+++. ... .+...|..+...+...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455666777777788888888877776 223 35677888888888999999999999999999999 88889999999
Q ss_pred HHhc-CChhHHHHHHHHHHhCC
Q 005265 604 YAEL-GRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 604 ~~~~-g~~~~A~~~~~~~~~~~ 624 (705)
+... |++++|.+.+++.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999999887654
No 141
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.46 E-value=6.9e-07 Score=73.71 Aligned_cols=94 Identities=13% Similarity=0.000 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL 607 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 607 (705)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455667788889999999988887 3445 6778888888899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 005265 608 GRWGEVVRVRKLMRKR 623 (705)
Q Consensus 608 g~~~~A~~~~~~~~~~ 623 (705)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998754
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.46 E-value=3e-06 Score=69.11 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345556666677777777777777665 2233 56667777777777777888888888877777777777777778888
Q ss_pred hcCChhHHHHHHHHHHh
Q 005265 606 ELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~~ 622 (705)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88888888877777764
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.45 E-value=1.9e-06 Score=72.86 Aligned_cols=98 Identities=12% Similarity=0.031 Sum_probs=84.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005265 526 PLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNM 603 (705)
Q Consensus 526 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 603 (705)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34677788888888888888888888876 3334 577888888889999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 005265 604 YAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 604 ~~~~g~~~~A~~~~~~~~~~ 623 (705)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999998753
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.44 E-value=5.5e-06 Score=75.51 Aligned_cols=129 Identities=12% Similarity=0.026 Sum_probs=75.3
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC-C----H
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEH---GLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-P---MQP-D----A 560 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p-~----~ 560 (705)
++..+...+...|++++|...+++..... +..|. ...+..+...|...|++++|.+.+++. . ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 44444444445555555555544443211 11111 344555566666666666666666554 1 012 2 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCC----chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 561 VIWGSLLAACKVHRNIMLGEYVAKKLLEIEP--SNS----GPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.++..+...+...|++++|...+++++++.+ .+. ..+..++.++...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3456666677778888888888888876522 121 1246788888888888888888887764
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=1.3e-06 Score=76.78 Aligned_cols=95 Identities=11% Similarity=0.031 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++...|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555556666666666665554 2223 45555666666666666666666666666666666666666666666
Q ss_pred hcCChhHHHHHHHHHHh
Q 005265 606 ELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~~ 622 (705)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666666553
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.44 E-value=3.2e-06 Score=70.80 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=88.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005265 527 LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMY 604 (705)
Q Consensus 527 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 604 (705)
+...+..+...+.+.|++++|.+.|++. ...| +..+|..+...+...|++++|...++++++..|++...+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4778888999999999999999999987 4455 6788899999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 005265 605 AELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 605 ~~~g~~~~A~~~~~~~~~~ 623 (705)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999998753
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.43 E-value=7.1e-07 Score=76.71 Aligned_cols=106 Identities=9% Similarity=-0.065 Sum_probs=82.4
Q ss_pred CCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 005265 488 EKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIW 563 (705)
Q Consensus 488 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 563 (705)
+.|+. ..+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|+..|+++ ...| +...|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 44544 35666677777888888888888877653 34 4777788888888888888888888876 3344 56778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 005265 564 GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 564 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 596 (705)
..+..++...|++++|...|++++++.|+++..
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 888888999999999999999999999988764
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.42 E-value=4.9e-06 Score=68.63 Aligned_cols=96 Identities=19% Similarity=0.226 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
...+..+...+.+.|++++|.+.++++ .. +.+..++..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 22 3467788999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005265 606 ELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~~~ 623 (705)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998753
No 149
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.39 E-value=1.4e-06 Score=73.90 Aligned_cols=91 Identities=19% Similarity=0.040 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------C
Q 005265 532 TCMVDLLGRAGCLDEAKTLIEAM-PMQPD-------------AVIWGSLLAACKVHRNIMLGEYVAKKLLEI-------E 590 (705)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~ 590 (705)
......+.+.|++++|+..|++. .+.|+ ...|..+..++...|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34445555566666666666554 22222 338899999999999999999999999999 9
Q ss_pred CCCCchH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 591 PSNSGPY----VLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 591 p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
|++...| ..++.++...|++++|+..|++..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999 9999999999999999999999875
No 150
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.38 E-value=2.3e-06 Score=74.91 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 560 AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
...|..+..++...|++++|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 457888888899999999999999999999999999999999999999999999999998874
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.38 E-value=5e-06 Score=69.28 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=87.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005265 527 LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMY 604 (705)
Q Consensus 527 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 604 (705)
+...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3667788889999999999999999987 3334 6788888999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 005265 605 AELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 605 ~~~g~~~~A~~~~~~~~~~ 623 (705)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998753
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=4.1e-06 Score=71.77 Aligned_cols=95 Identities=16% Similarity=0.049 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 556666667777777777777777766 44565 4566667777777788888888888887777777777777888
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 005265 603 MYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 603 ~~~~~g~~~~A~~~~~~~~~ 622 (705)
+|...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888887777764
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.37 E-value=4.2e-06 Score=76.25 Aligned_cols=154 Identities=14% Similarity=0.018 Sum_probs=115.1
Q ss_pred HhcCCHHHHHH---HHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHhccCcH
Q 005265 437 MKCGSVEDGCR---IFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLC----GEKPD-HVTMIGVLCACSHAGLV 508 (705)
Q Consensus 437 ~~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~ 508 (705)
...|++++|.+ .+..-......++..+...+...|++++|...+++..+. |..|. ..++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45789999999 665544446678899999999999999999999998762 22222 24677888889999999
Q ss_pred HHHHHHHHHhHHhcCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCC
Q 005265 509 EEGRKYFSSMSKEHGLAP-L----KDHYTCMVDLLGRAGCLDEAKTLIEAM----PMQPD----AVIWGSLLAACKVHRN 575 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~ 575 (705)
++|...+++..+...-.+ + ...+..+...+...|++++|...+++. ...++ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 999999988765422122 1 456788889999999999999998876 11122 2345777788999999
Q ss_pred HHHHHHHHHHHHhhC
Q 005265 576 IMLGEYVAKKLLEIE 590 (705)
Q Consensus 576 ~~~a~~~~~~~~~~~ 590 (705)
+++|.+.+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998763
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=3.4e-06 Score=76.71 Aligned_cols=171 Identities=9% Similarity=-0.122 Sum_probs=107.6
Q ss_pred HHHHHhcCCHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHH
Q 005265 433 IDMYMKCGSVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVE 509 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 509 (705)
+......|+++.|.+.++.-... ....|..+...+...|++++|+..|++.++ ..|+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------hHH
Confidence 33444556666666666543322 445677788888889999999999998887 33432211100 000
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005265 510 EGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLL 587 (705)
Q Consensus 510 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 587 (705)
.-. .. .....+..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...+++++
T Consensus 81 ~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 00 01356777788888888999888888876 3334 67788888999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHhcCChhHHH-HHHHHHHhCC
Q 005265 588 EIEPSNSGPYVLLSNMYAELGRWGEVV-RVRKLMRKRG 624 (705)
Q Consensus 588 ~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 624 (705)
+++|++..++..++.++...|+.+++. ..+..|..++
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999888877 5666665443
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=1.2e-05 Score=65.41 Aligned_cols=109 Identities=14% Similarity=0.017 Sum_probs=75.4
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACK 571 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 571 (705)
.+..+...+...|++++|...++...... +.+...+..+..+|.+.|++++|...+++. ...| +...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44455555666666666666666665431 223566666777777777777777777665 2233 5667778888888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005265 572 VHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMY 604 (705)
Q Consensus 572 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 604 (705)
..|++++|...++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 889999999999999999998877776666553
No 156
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.29 E-value=8.4e-06 Score=72.47 Aligned_cols=126 Identities=7% Similarity=0.044 Sum_probs=93.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCh-
Q 005265 468 AQNGYGTEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDL-LGRAGCL- 544 (705)
Q Consensus 468 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~- 544 (705)
...|++++|+..+++..+. .|+ ...+..+...+...|++++|...|+.+.+.. +.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 3457777888888887773 343 4577777778888888888888888776542 2246677777777 7788888
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 005265 545 -DEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPY 597 (705)
Q Consensus 545 -~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 597 (705)
++|...++++ ...| +...|..+...+...|++++|...++++++..|++....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8998888877 3344 567888888889999999999999999999999886533
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.28 E-value=5.3e-06 Score=70.67 Aligned_cols=104 Identities=9% Similarity=-0.058 Sum_probs=76.2
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAAC 570 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 570 (705)
.+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|+..|++. ...| +...|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4455556667777777777777776543 34 3666777777788888888888887776 2333 566777888889
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 005265 571 KVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 600 (705)
...|++++|...+++++++.|+++......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 999999999999999999999887654443
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=1.3e-05 Score=68.62 Aligned_cols=109 Identities=11% Similarity=-0.072 Sum_probs=71.5
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLL 567 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 567 (705)
.+..+...+...|++++|...|+...+ ..|+ ...+..+..+|...|++++|+..+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444455555555555555554432 2333 445556666666677777777666655 2233 566777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 568 AACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 568 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
.++...|++++|...++++++++|++...+..+..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88888999999999999999999988776666666543
No 159
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.27 E-value=5.6e-06 Score=82.28 Aligned_cols=96 Identities=7% Similarity=-0.091 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----------------AVIWGSLLAACKVHRNIMLGEYVAKKLLEIE 590 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 590 (705)
...+..+...|.+.|++++|+..|++. ...|+ ..+|..+..++...|++++|...++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 556677777777788888888777766 23333 4788999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 591 PSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 591 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
|+++.+|..++.+|...|++++|+..+++..+.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864
No 160
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.27 E-value=7.8e-06 Score=78.97 Aligned_cols=188 Identities=7% Similarity=-0.055 Sum_probs=120.9
Q ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCC---CChhHHHH
Q 005265 386 YTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVE---RDWVSWNA 462 (705)
Q Consensus 386 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 462 (705)
..+..+...+...|++++|...+..+++.. +.+...+..+..+|.+.|++++|...+++..+ .+...|..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 77 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 77 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 344445555666666666666666666654 45778888899999999999999999988764 36678888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 005265 463 MIVGCAQNGYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRA 541 (705)
Q Consensus 463 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 541 (705)
+..+|...|++++|+..|++..+ +.|+.. .+...+..... ...+..... .... ...++......+...+ .
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~-~~~~~~~i~~~l~~l~--~ 148 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALR---IAKKKRWNS-IEER-RIHQESELHSYLTRLI--A 148 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHH---HHHHHHHHH-HHHT-CCCCCCHHHHHHHHHH--H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHH---HHHHHHHHH-HHHH-HHhhhHHHHHHHHHHH--H
Confidence 99999999999999999999887 334331 11112221111 111222222 2122 3444555555554433 6
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhc-CCHHHHHHHHHHHHhh
Q 005265 542 GCLDEAKTLIEAM-PMQPDAVIWGSLLAA-CKVH-RNIMLGEYVAKKLLEI 589 (705)
Q Consensus 542 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~-g~~~~a~~~~~~~~~~ 589 (705)
|+.++|++.++.. ...|+......-+.. +... +.+++|.++|.++.+.
T Consensus 149 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 149 AERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8999999988877 567765544333333 4444 6788899999888764
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=1.2e-05 Score=70.34 Aligned_cols=107 Identities=12% Similarity=-0.020 Sum_probs=80.6
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005265 493 VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAA 569 (705)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 569 (705)
..+..+...+...|++++|+..|+...+. .| +...|..+..+|.+.|++++|+..|++. ...| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34555666666777777777777766543 34 3667777777888888888888887776 3344 57788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 570 CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 570 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
+...|++++|...|+++++++|++...+...+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999999886655443
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.25 E-value=1e-05 Score=67.09 Aligned_cols=109 Identities=12% Similarity=-0.074 Sum_probs=74.2
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAAC 570 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 570 (705)
.+......+...|++++|...|+...+. .| +...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3444555566666666666666666543 23 3566677777777777777777777765 3334 466777888888
Q ss_pred HhcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHH
Q 005265 571 KVHRNIMLGEYVAKKLLEIE------PSNSGPYVLLSNMYA 605 (705)
Q Consensus 571 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 605 (705)
...|++++|...++++++++ |++......+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 88888999999999888888 777666666555543
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=9.7e-06 Score=67.49 Aligned_cols=95 Identities=9% Similarity=0.044 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------CchHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PM-QPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN-------SGPYV 598 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 598 (705)
...+..+...+...|++++|...|++. .. +.+...+..+...+...|++++|...++++++..|++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677778888888888888888876 22 3467788888888999999999999999999997766 77889
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 005265 599 LLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.++.+|...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999885
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=4.8e-06 Score=69.45 Aligned_cols=89 Identities=18% Similarity=0.138 Sum_probs=59.6
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHH
Q 005265 534 MVDLLGRAGCLDEAKTLIEAM-PMQPD-A---VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN---SGPYVLLSNMYA 605 (705)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 605 (705)
+...+.+.|++++|...|+++ ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 445555666666666666655 21222 2 356666666777777777777777777777777 555777777777
Q ss_pred hcCChhHHHHHHHHHHh
Q 005265 606 ELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 606 ~~g~~~~A~~~~~~~~~ 622 (705)
..|++++|...++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777777764
No 165
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.22 E-value=1.9e-05 Score=69.02 Aligned_cols=127 Identities=7% Similarity=-0.088 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDL 537 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 537 (705)
.|..+...+...|++++|...|++..+. .| +..++..+...+...|++++|...++...+.. +.+...+..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 4455555666666666666666666652 33 33455666666666677777777766665431 2235566666677
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 538 LGRAGCLDEAKTLIEAM-PMQP-DAVIWG--SLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
|.+.|++++|...++++ ...| +...+. ..+..+...|++++|...+++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 77777777777777665 2223 333442 2333356677777777777776544
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.22 E-value=0.00077 Score=65.77 Aligned_cols=223 Identities=12% Similarity=0.067 Sum_probs=134.2
Q ss_pred HHHHcCChHHHHHHHHHhhhCCCCcchh-hHHHHHHHHhhcc-cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHH
Q 005265 359 GYTQNGENEEALGLFRLLKRESVCPTHY-TFGNLLNACANLA-DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMY 436 (705)
Q Consensus 359 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 436 (705)
.....+..++|+.++++++..+ |+.. .++.--..+...+ .++++...+..+.... +.+..+|+.-...+
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-------PKny~aW~hR~wlL 133 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-------LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-------CCCHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHH
Confidence 3344555677888888887753 4433 3454444555566 4888888888888766 45677777766666
Q ss_pred Hhc-C-CHHHHHHHHHccCCC---ChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCC-ChhhHHHHHHHH
Q 005265 437 MKC-G-SVEDGCRIFETMVER---DWVSWNAMIVGCAQNGYGT--------EALGLFKKMLLCGEKP-DHVTMIGVLCAC 502 (705)
Q Consensus 437 ~~~-g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p-~~~~~~~ll~~~ 502 (705)
.+. + ++++++++++++.+. |..+|+--...+.+.|.++ ++++.++++++. .| |...|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 665 6 788888888888754 5566666555555555555 788888888874 34 445666666666
Q ss_pred hccCc-------HHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCh--------------------HHHHHHHHhC
Q 005265 503 SHAGL-------VEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCL--------------------DEAKTLIEAM 554 (705)
Q Consensus 503 ~~~g~-------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~ 554 (705)
.+.+. ++++++.++++... .|+ ...|+.+-..+.+.|+. .+..++..++
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPM 288 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHH
Confidence 66664 67777777766543 343 66676666666666653 2233333333
Q ss_pred -CC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhCCCCCc
Q 005265 555 -PM-------QPDAVIWGSLLAACKVHRNIMLGEYVAKKLL-EIEPSNSG 595 (705)
Q Consensus 555 -~~-------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~ 595 (705)
.. .++...+..++..|...|+.++|.++++.+. +.+|-...
T Consensus 289 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~ 338 (349)
T 3q7a_A 289 PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAG 338 (349)
T ss_dssp CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHH
Confidence 11 1345555555555555566666666666554 33554433
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.22 E-value=1.9e-05 Score=71.69 Aligned_cols=118 Identities=10% Similarity=-0.043 Sum_probs=84.9
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C----------------HHHHH
Q 005265 503 SHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-D----------------AVIWG 564 (705)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~ 564 (705)
...|+++.+.+.|+..... .......+..+...+.+.|++++|+..|++. ...| + ..+|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3345555555555422211 0112445666677777788888888877765 2222 1 26788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 565 SLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 565 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+..++...|++++|...++++++++|++..++..++.+|...|++++|.+.+++..+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999999999999999999874
No 168
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.22 E-value=0.00041 Score=67.35 Aligned_cols=228 Identities=12% Similarity=0.076 Sum_probs=142.2
Q ss_pred HHcCChH-HHHHHHHHhhhCCCCcchhh-HHHHHHHHhhcc----------cHHHHHHHHHHHHHhCCCCCCCCCCcHhH
Q 005265 361 TQNGENE-EALGLFRLLKRESVCPTHYT-FGNLLNACANLA----------DLQLGRQAHTHVVKHGLRFLSGEESDIFV 428 (705)
Q Consensus 361 ~~~g~~~-~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 428 (705)
.+.|.++ +|+.++..++.. .|+..| ++.--..+...+ .++.+..++..+.... +.+..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-------PKny~a 110 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------PKSYGT 110 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-------CCCHHH
Confidence 3455554 788888888864 455443 222222222222 2567788888888776 467777
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHccCC---CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCh-hhHHHHHHH
Q 005265 429 GNSLIDMYMKCG--SVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGY-GTEALGLFKKMLLCGEKPDH-VTMIGVLCA 501 (705)
Q Consensus 429 ~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~ 501 (705)
|+.-...+.+.| .+++++.+++++.+ +|..+|+--...+...|. ++++++.++++++. .|+. ..|+.....
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~l 188 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 777777777777 47888888888763 477788877777777787 58889999988884 4433 455554444
Q ss_pred Hhcc--------------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc-----------CChHHHHHHHHhC-
Q 005265 502 CSHA--------------GLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRA-----------GCLDEAKTLIEAM- 554 (705)
Q Consensus 502 ~~~~--------------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~- 554 (705)
+... +.++++++.++..... .|+ ...|+.+-..+.+. +.++++++.++++
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ 265 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 4333 4577788877777643 444 66666655555554 3466677766666
Q ss_pred CCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005265 555 PMQPDAVIWGSLLAA-----CKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNM 603 (705)
Q Consensus 555 ~~~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 603 (705)
...||. .|..+..+ ....|..++....+.++.+++|...+.|..+..-
T Consensus 266 e~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 266 ELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 445553 33322221 1134566677777777777777766666555443
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.21 E-value=1.4e-06 Score=71.43 Aligned_cols=82 Identities=16% Similarity=0.078 Sum_probs=55.0
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHH
Q 005265 541 AGCLDEAKTLIEAM-PM---QP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVR 615 (705)
Q Consensus 541 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 615 (705)
.|++++|+..|++. .. .| +...|..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666655 33 23 344666667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 005265 616 VRKLMRK 622 (705)
Q Consensus 616 ~~~~~~~ 622 (705)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.20 E-value=1.1e-05 Score=83.89 Aligned_cols=161 Identities=13% Similarity=-0.004 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHH
Q 005265 440 GSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFS 516 (705)
Q Consensus 440 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 516 (705)
+++++|...|+.... .....|..+...|.+.|++++|+..|++.++ +.|+...+ . .+...+ ..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~-~~ 313 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKA-SE 313 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHH-HH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHH-HH
Confidence 344455544443332 1345677788888888888888888888887 33433210 0 011110 00
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 517 SMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 517 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
. .....|..+..+|.+.|++++|+..++++ .+.| +...|..+..++...|++++|...|+++++++|++.
T Consensus 314 ~--------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 314 S--------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred H--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 0 11456788888999999999999999887 3344 677899999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChhHHHH-HHHHHHh
Q 005265 595 GPYVLLSNMYAELGRWGEVVR-VRKLMRK 622 (705)
Q Consensus 595 ~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 622 (705)
.++..++.++.+.|++++|.+ .+++|..
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998774 5555554
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.15 E-value=7e-06 Score=85.82 Aligned_cols=116 Identities=9% Similarity=-0.001 Sum_probs=92.6
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005265 500 CACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNI 576 (705)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 576 (705)
..+...|++++|.+.+++..+. .|+ ...|..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456778888888888877654 454 778888888888889999998888877 4445 577888888889999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHH--HHhcCChhHHHHHHH
Q 005265 577 MLGEYVAKKLLEIEPSNSGPYVLLSNM--YAELGRWGEVVRVRK 618 (705)
Q Consensus 577 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 618 (705)
++|.+.++++++++|++...+..++.+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999889888888 888899999999887
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.14 E-value=2e-05 Score=66.43 Aligned_cols=98 Identities=7% Similarity=-0.137 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005265 492 HVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLA 568 (705)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 568 (705)
...+..+...+...|++++|...|+..... .|+ ...+..+..+|...|++++|...+++. ...| +...|..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 345666666666677777777777666543 233 566777777777777777777777766 2233 5667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCC
Q 005265 569 ACKVHRNIMLGEYVAKKLLEIEPS 592 (705)
Q Consensus 569 ~~~~~g~~~~a~~~~~~~~~~~p~ 592 (705)
++...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888999999999998888776
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=3.3e-05 Score=79.98 Aligned_cols=190 Identities=5% Similarity=-0.106 Sum_probs=139.8
Q ss_pred HHHHHhcCCHHHHHHHHHccCCC-----C---------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC
Q 005265 433 IDMYMKCGSVEDGCRIFETMVER-----D---------------WVSWNAMIVGCAQNGYGTEALGLFKKMLLC-GEKPD 491 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~-----~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~ 491 (705)
...+.+.|++++|.+.|..+.+. + ..++..++..|...|++++|.+.+.++... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567889999999999877421 1 124778899999999999999999987763 11122
Q ss_pred hh----hHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-----C--C
Q 005265 492 HV----TMIGVLCACSHAGLVEEGRKYFSSMSKE---HGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-----P--M 556 (705)
Q Consensus 492 ~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~ 556 (705)
.. ..+.+-..+...|+++.|..+++..... .+..+. ..++..+...|...|++++|..++++. . .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 2233334455678999999988876532 123333 667888999999999999999998876 1 1
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC----CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 557 QPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEIE---PSN----SGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 557 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+|. ..++..++..|...|++++|...+++++... ++. ...+..++..+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 222 4477788888999999999999999998763 222 23467788888999999999998877754
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.11 E-value=0.0002 Score=69.93 Aligned_cols=212 Identities=12% Similarity=0.084 Sum_probs=154.4
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHccCC---CChhHHHHHHHHHHHc-C-Ch
Q 005265 400 DLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCG-SVEDGCRIFETMVE---RDWVSWNAMIVGCAQN-G-YG 473 (705)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~ 473 (705)
..++|.++...++..+ +.+..+|+.--..+...| .++++++.++.+.. ++..+|+.-...+... + ++
T Consensus 69 ~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp CSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred CCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 3457888888888887 467778888777888888 59999999998864 4677888877777776 7 89
Q ss_pred HHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCcHH--------HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-
Q 005265 474 TEALGLFKKMLLCGEKPD-HVTMIGVLCACSHAGLVE--------EGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGC- 543 (705)
Q Consensus 474 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~- 543 (705)
++++++++++++ ..|. ..+|..-...+.+.|.++ ++++.++.+.+.. .-+...|+....++.+.++
T Consensus 142 ~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 142 VSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp HHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcccc
Confidence 999999999998 4454 456666555555555555 8999999887651 2357788888888888886
Q ss_pred ------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhhC-----
Q 005265 544 ------LDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNI--------------------MLGEYVAKKLLEIE----- 590 (705)
Q Consensus 544 ------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~----- 590 (705)
++++++.++++ ...| |...|+.+-..+.+.|+. .........+....
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 68889888876 3445 778888877777776654 12222222222222
Q ss_pred -CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 591 -PSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 591 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+..+.+...|+++|...|+.++|.++++.+.+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 35556678999999999999999999999864
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=1.9e-05 Score=68.55 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CCc
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM----PMQPD----AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPS------NSG 595 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 595 (705)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555555555555555543 00111 335666677778888888888888888766221 234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 596 PYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 596 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 577889999999999999999988764
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.09 E-value=4.8e-05 Score=63.15 Aligned_cols=102 Identities=11% Similarity=0.009 Sum_probs=68.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 005265 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPL-K---DHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----AVIWGSLLA 568 (705)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 568 (705)
+...+...|++++|...|+.+.+. .|+ . ..+..+..+|.+.|++++|...|++. ...|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344555666666666666666543 222 2 35666667777777777777777665 22333 556777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005265 569 ACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSN 602 (705)
Q Consensus 569 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 602 (705)
++...|++++|...++++++..|+++........
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 8888999999999999999999987654444333
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.09 E-value=1.5e-05 Score=65.62 Aligned_cols=97 Identities=10% Similarity=0.060 Sum_probs=66.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACK 571 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 571 (705)
+..+...+...|++++|...|+.+.+. .| +...|..+..++.+.|++++|+..|++. ...| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444555666777777777777776643 34 3667777777777778888887777776 3444 5667777888888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCC
Q 005265 572 VHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 572 ~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
..|++++|...++++++.+|++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888754
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.08 E-value=3.1e-05 Score=62.23 Aligned_cols=100 Identities=10% Similarity=-0.027 Sum_probs=72.9
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 005265 493 VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP---DAVIWGSLLA 568 (705)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 568 (705)
..+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 355566666777777777777777765431 223666777777888888888888887776 3334 4677888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhhCCCCC
Q 005265 569 ACKVH-RNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 569 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 594 (705)
.+... |++++|.+.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 889999999998888888764
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=2.3e-05 Score=78.75 Aligned_cols=137 Identities=10% Similarity=-0.052 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHH
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVD 536 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 536 (705)
..|..+...+.+.|++++|+..|++.++. .|+.. .... .+... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 45777777788888888888888877761 11110 0000 11110 1223 3667888999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHH
Q 005265 537 LLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVV 614 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 614 (705)
+|.+.|++++|++.++++ ...| +...|..+..++...|++++|...++++++++|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 5556 57788899999999999999999999999999999999999999999999888776
Q ss_pred HH
Q 005265 615 RV 616 (705)
Q Consensus 615 ~~ 616 (705)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 180
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.04 E-value=4.1e-05 Score=63.53 Aligned_cols=58 Identities=7% Similarity=-0.074 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhH
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMS 519 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (705)
+..+...+.+.|++++|++.|++.++ +.|+. ..|..+..++...|++++|++.++...
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 44455555555555555555555555 33432 344445555555555555555555443
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.04 E-value=2.1e-05 Score=81.85 Aligned_cols=96 Identities=7% Similarity=-0.079 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD----------------AVIWGSLLAACKVHRNIMLGEYVAKKLLEIE 590 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 590 (705)
...+..+...|.+.|++++|+..|+++ ...|+ ..+|..+..++.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 445556666666677777777766665 22222 5788889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 591 PSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 591 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
|++..+|..++.+|...|++++|+..+++..+.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999864
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.04 E-value=2e-05 Score=65.54 Aligned_cols=109 Identities=8% Similarity=-0.061 Sum_probs=63.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HHHHHH
Q 005265 495 MIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM-PM----QPD----AVIWGS 565 (705)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 565 (705)
+..+...+...|++++|...|+...+.. +.+...+..+..+|...|++++|...++++ .. .++ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3344444445555555555555444321 123444555555555566666665555554 11 122 556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE 606 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 606 (705)
+...+...|++++|...++++++..| ++.....+..+...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 77778888888888888888888887 45555555555443
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.04 E-value=0.00019 Score=76.42 Aligned_cols=168 Identities=8% Similarity=-0.012 Sum_probs=138.1
Q ss_pred CCHHHHHHHHHccCC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcc
Q 005265 440 GSVEDGCRIFETMVE---RDWVSWNAMIVGCAQNGY----------GTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHA 505 (705)
Q Consensus 440 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 505 (705)
...++|++.++.+.. .+..+|+.-...+...|+ ++++++.++++++ ..|.. .+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 345678888888763 356678877777777777 8999999999998 55655 5788888888888
Q ss_pred C--cHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 005265 506 G--LVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAG-CLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVH------ 573 (705)
Q Consensus 506 g--~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 573 (705)
| +++++++.++.+.+. .| +...|+.-..++.+.| .++++++.++++ ...| |..+|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8 779999999999865 44 4788888888888999 899999999988 5555 677898888776653
Q ss_pred --------CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhH
Q 005265 574 --------RNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGE 612 (705)
Q Consensus 574 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 612 (705)
+.++++.+.+.++++++|++..+|..+.+++.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998655
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=3.5e-05 Score=80.50 Aligned_cols=116 Identities=11% Similarity=0.094 Sum_probs=61.5
Q ss_pred HHHHHHhcCCHHHHHHHHHccC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCc
Q 005265 432 LIDMYMKCGSVEDGCRIFETMV---ERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGL 507 (705)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~ 507 (705)
+...+.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.+++.++ +.|+. .++..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 3344556666666666666553 22455666666666666666666666666666 34433 355555566666666
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH--HHhcCChHHHHHHHH
Q 005265 508 VEEGRKYFSSMSKEHGLAPL-KDHYTCMVDL--LGRAGCLDEAKTLIE 552 (705)
Q Consensus 508 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 552 (705)
+++|.+.|+++.+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666655543 222 3333333333 555556666655555
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.02 E-value=1.5e-05 Score=82.73 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=90.6
Q ss_pred HhccCcHHHHHHHHHHhHHhcC--C---CCC-hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEHG--L---APL-KDHYTCMVDLLGRAGCLDEAKTLIEAM---------PMQPD-AVIWGS 565 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~~--~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 565 (705)
+...|++++|..++++...... + .|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456677777666665543221 1 222 556777888888888888888877765 23454 347888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh-----CCCCCch---HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEI-----EPSNSGP---YVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
|...|...|++++|+.++++++++ .|+++.+ ...|..++..+|++++|..+++++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999875 6776654 4578888999999999999999998743
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.02 E-value=0.00098 Score=64.70 Aligned_cols=215 Identities=12% Similarity=0.060 Sum_probs=151.9
Q ss_pred hcccH-HHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCC----------HHHHHHHHHccC---CCChhHHHH
Q 005265 397 NLADL-QLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGS----------VEDGCRIFETMV---ERDWVSWNA 462 (705)
Q Consensus 397 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~---~~~~~~~~~ 462 (705)
+.|.+ ++|..+...++..++ .+..+|+.--..+...+. +++++.+++.+. .++..+|+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP-------~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~h 113 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP-------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 113 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT-------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-------hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34444 468888888887763 455566554444433333 578888888776 347788888
Q ss_pred HHHHHHHcCC--hHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 005265 463 MIVGCAQNGY--GTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGL-VEEGRKYFSSMSKEHGLAPLKDHYTCMVDLL 538 (705)
Q Consensus 463 li~~~~~~g~--~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 538 (705)
-...+...++ +++++.+++++.+. .| |..+|+.-..++...|. ++++++.++.+.+.. .-+...|+....++
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll 189 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
Confidence 8778888884 89999999999994 45 44577777777777787 689999999988652 23477787777766
Q ss_pred Hhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCC
Q 005265 539 GRA--------------GCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVH-----------RNIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 539 ~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p 591 (705)
.+. +.++++++.++.. ...| |...|+-+-..+... +.++++++.+++++++.|
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 655 4578899988877 3344 677887666655544 457899999999999999
Q ss_pred CCCchHHHHHHHH---HhcCChhHHHHHHHHHHh
Q 005265 592 SNSGPYVLLSNMY---AELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 592 ~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~ 622 (705)
++.-.+..++.+. ...|..++....+.++.+
T Consensus 270 d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 270 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 9844333333222 246778888889988875
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.00 E-value=3.1e-05 Score=77.85 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+..+|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4567888889999999999999999999999999999999999999999999999999999885
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.99 E-value=4.1e-05 Score=66.36 Aligned_cols=97 Identities=14% Similarity=-0.041 Sum_probs=54.4
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHH
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAM-------PMQP-DAV 561 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~ 561 (705)
++..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444455555555555555544322110111 334555566666666666666666554 1011 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIE 590 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 590 (705)
++..+...+...|++++|.+.+++++++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56667777888888888888888887763
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=9.6e-05 Score=76.46 Aligned_cols=159 Identities=12% Similarity=0.002 Sum_probs=121.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLCGEKPDH----------------VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL 527 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 527 (705)
...+...|++++|++.|.++.+....... ..+..+...|...|++++|.+++..+.+..+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567889999999999999985322111 13677889999999999999999988765443333
Q ss_pred h----hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------
Q 005265 528 K----DHYTCMVDLLGRAGCLDEAKTLIEAM-------PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEI------ 589 (705)
Q Consensus 528 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 589 (705)
. .+.+.+...+...|++++|.++++.. +..+. ..++..+...+...|++++|..+++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23444555667789999999988765 22333 457788888899999999999999999875
Q ss_pred CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 590 EPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 590 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.|....++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 222334688999999999999999999998864
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.97 E-value=1.1e-05 Score=66.02 Aligned_cols=93 Identities=10% Similarity=0.032 Sum_probs=64.8
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005265 505 AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEY 581 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 581 (705)
.|++++|+..|++..+...-.|+ ...+..+..+|.+.|++++|+..|++. ...| +...+..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46677777777766532000233 566777778888888888888888776 3334 56677888888889999999999
Q ss_pred HHHHHHhhCCCCCchH
Q 005265 582 VAKKLLEIEPSNSGPY 597 (705)
Q Consensus 582 ~~~~~~~~~p~~~~~~ 597 (705)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 9999999988886543
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.97 E-value=1.5e-05 Score=69.66 Aligned_cols=123 Identities=15% Similarity=-0.016 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-Chh
Q 005265 457 WVSWNAMIVGCAQNGYGTEALGLFKKMLLCG------EKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAP-LKD 529 (705)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~ 529 (705)
...+......+.+.|++++|+..|++.+..- -.|+...+ ..+ .| +..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~------~~~~~~ 64 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL------DRKNIP 64 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH------HHTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH------HHHHHH
Confidence 3456666677777777777777777766520 01111000 000 12 256
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-chHHHHHHHHH
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS-GPYVLLSNMYA 605 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~ 605 (705)
.|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|++. .....+..+..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 7888888999999999999988887 3444 577888999999999999999999999999999987 44444444433
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.96 E-value=1.7e-05 Score=78.89 Aligned_cols=147 Identities=10% Similarity=-0.088 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 005265 457 WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVD 536 (705)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 536 (705)
...|..+...+.+.|++++|+..|++.+. +.|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 44677777788888999999999998887 4565442 234445555443321 136778888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH-HhcCChhHH
Q 005265 537 LLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMY-AELGRWGEV 613 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 613 (705)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++++++|++..++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988887 3344 6778888888899999999999999999999999888888888884 445677778
Q ss_pred HHHHHHHHhC
Q 005265 614 VRVRKLMRKR 623 (705)
Q Consensus 614 ~~~~~~~~~~ 623 (705)
.+.+++|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888887654
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.95 E-value=4.5e-05 Score=60.11 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778889999999999999999999999999999999999999999999999999999998875
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.92 E-value=1.5e-05 Score=67.53 Aligned_cols=114 Identities=15% Similarity=-0.024 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CChhHHHHHHHH
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLA-PLKDHYTCMVDL 537 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~ 537 (705)
.+......+...|++++|+..|++.++ +.|+...- ++ .... .+...|..+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~--------------~a----------~~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE--------------EA----------FDHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT--------------SC----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch--------------hh----------hhhccchHHHHHHHHHH
Confidence 455566667777777777777777777 44541100 00 0000 012255666666
Q ss_pred HHhcCChHHHHHHHHhC-C-------CCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 005265 538 LGRAGCLDEAKTLIEAM-P-------MQPD-AVIW----GSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYV 598 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~-~-------~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 598 (705)
+.+.|++++|+..+++. . +.|+ ...| .....++...|++++|+..|+++++++|++...+.
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 66666666666665554 3 3776 4577 88999999999999999999999999999877543
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.92 E-value=2.7e-05 Score=77.40 Aligned_cols=153 Identities=10% Similarity=-0.023 Sum_probs=81.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 005265 425 DIFVGNSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSH 504 (705)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 504 (705)
....+..+...+.+.|++++|...|++....+.... .+...++..++...+. ...|..+..++.+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 456677888999999999999999998753222111 1122333333333221 1367778888889
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCCHHHHH
Q 005265 505 AGLVEEGRKYFSSMSKEHGLAP-LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQPD-AVIWGSLLAA-CKVHRNIMLGE 580 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~g~~~~a~ 580 (705)
.|++++|+..++...+. .| +...|..+..+|...|++++|+..|+++ .+.|+ ...+..+... ....+..+.+.
T Consensus 243 ~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988754 45 4788888999999999999999999988 55664 3445555444 34567778889
Q ss_pred HHHHHHHhhCCCCCc
Q 005265 581 YVAKKLLEIEPSNSG 595 (705)
Q Consensus 581 ~~~~~~~~~~p~~~~ 595 (705)
..|+++++..|.++.
T Consensus 320 ~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 320 EMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------
T ss_pred HHHHHhhCCCCCCCC
Confidence 999999999887653
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=2.2e-05 Score=63.19 Aligned_cols=93 Identities=14% Similarity=-0.005 Sum_probs=74.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHH
Q 005265 527 LKDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN------SGPYV 598 (705)
Q Consensus 527 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 598 (705)
+...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777788888888888888888876 3334 67788888888999999999999999999999998 66777
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 005265 599 LLSNMYAELGRWGEVVRVRKL 619 (705)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~ 619 (705)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877776655543
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.86 E-value=7.6e-05 Score=57.32 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYA 605 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 605 (705)
...+..+...+.+.|++++|+..+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777788888888888888776 2233 56678888888888999999999999999999988888888888887
Q ss_pred hcC
Q 005265 606 ELG 608 (705)
Q Consensus 606 ~~g 608 (705)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.86 E-value=1.1e-05 Score=68.24 Aligned_cols=84 Identities=13% Similarity=0.075 Sum_probs=62.3
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 005265 540 RAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRN----------IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL 607 (705)
Q Consensus 540 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 607 (705)
+.+++++|++.++.. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334455555555554 2233 45555555555555443 56999999999999999999999999999987
Q ss_pred C-----------ChhHHHHHHHHHHhC
Q 005265 608 G-----------RWGEVVRVRKLMRKR 623 (705)
Q Consensus 608 g-----------~~~~A~~~~~~~~~~ 623 (705)
| ++++|++.|++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999999864
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.83 E-value=5.3e-05 Score=61.48 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=63.6
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 546 EAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 546 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+|++.|++. ...| +...|..+...+...|++++|...++++++.+|++...+..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555554 3344 5778888888899999999999999999999999988999999999999999999999998875
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=3.5e-05 Score=79.87 Aligned_cols=113 Identities=10% Similarity=-0.022 Sum_probs=85.9
Q ss_pred HHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCC---chHH
Q 005265 537 LLGRAGCLDEAKTLIEAM---------PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEI-----EPSNS---GPYV 598 (705)
Q Consensus 537 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~ 598 (705)
.+...|++++|+.++++. +..|+ ..+++.|...|...|++++|+.++++++++ .|+++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 466789999999998775 12343 447899999999999999999999999875 45554 4588
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHH
Q 005265 599 LLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREM 667 (705)
Q Consensus 599 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 667 (705)
.|+.+|..+|++++|+.++++..+.-.. .-...||...+....+.....++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~ 448 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMEL 448 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753110 01157888887766666555433
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00039 Score=55.57 Aligned_cols=66 Identities=9% Similarity=-0.009 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 558 PDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 558 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
++...|..+...+...|++++|...++++++.+|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345678888889999999999999999999999999999999999999999999999999998853
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.66 E-value=6.4e-05 Score=76.76 Aligned_cols=116 Identities=10% Similarity=0.143 Sum_probs=87.2
Q ss_pred HHHHHhcCChHHHHHHHHhC-C-----CCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCC---ch
Q 005265 535 VDLLGRAGCLDEAKTLIEAM-P-----MQP---D-AVIWGSLLAACKVHRNIMLGEYVAKKLLEI-----EPSNS---GP 596 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~-~-----~~p---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~ 596 (705)
+..+.+.|++++|++++++. . +.| + ..+++.|...|...|++++|+.++++++++ .|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677888888877655 1 222 2 347888888999999999999999999875 44444 45
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHH
Q 005265 597 YVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMK 668 (705)
Q Consensus 597 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 668 (705)
+..|+.+|..+|++++|+.++++..+.-. . .-..+||...++...+.....+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999875211 0 112579999999998888888775
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.60 E-value=0.0004 Score=53.38 Aligned_cols=69 Identities=14% Similarity=0.067 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 557 QPDAVIWGSLLAACKVHRN---IMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 557 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
.+|+..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567778888888654444 79999999999999999999999999999999999999999999997543
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.59 E-value=0.00051 Score=52.48 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 623 (705)
+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35577888888999999999999999999999999999999999999999999999999998753
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.58 E-value=0.00093 Score=56.09 Aligned_cols=111 Identities=5% Similarity=-0.049 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 005265 507 LVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKV----HRNIMLGEYV 582 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 582 (705)
++++|.++|+...+. + .|+. . |..+|...+..++|.+.|++.-...+...+..|...|.. .+++++|.+.
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455666666655433 2 2222 1 555555556666666666665223456666666666665 6777888888
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 005265 583 AKKLLEIEPSNSGPYVLLSNMYAE----LGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 583 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 625 (705)
|+++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8887766 455667888888888 7888888888888877664
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.53 E-value=0.00011 Score=62.14 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=35.8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCCc
Q 005265 545 DEAKTLIEAM-PMQP-DAVIWGSLLAACKVH-----------RNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 545 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
++|+..|++. .+.| +..+|..+..+|... |++++|.+.|+++++++|++..
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 3555555555 3344 344566666666554 5899999999999999999854
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.46 E-value=0.0017 Score=68.95 Aligned_cols=148 Identities=13% Similarity=0.033 Sum_probs=122.2
Q ss_pred CChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCc----------HHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 005265 471 GYGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGL----------VEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLL 538 (705)
Q Consensus 471 g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 538 (705)
...++|++.+++++. +.|+.. .|+.--.++...|+ ++++++.++.+.+. .|. ..+|..-..++
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 345688999999999 678765 45555555555566 89999999999865 454 78888888899
Q ss_pred HhcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc------
Q 005265 539 GRAG--CLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHR-NIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAEL------ 607 (705)
Q Consensus 539 ~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 607 (705)
.+.| +++++++.++++ ...| |..+|+.-.......| .++++.+.++++++.+|.+..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 779999999998 3344 7889999888888888 899999999999999999999999999998885
Q ss_pred --------CChhHHHHHHHHHHhC
Q 005265 608 --------GRWGEVVRVRKLMRKR 623 (705)
Q Consensus 608 --------g~~~~A~~~~~~~~~~ 623 (705)
++++++.+.+++....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 5678999988888754
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.41 E-value=0.0002 Score=72.88 Aligned_cols=82 Identities=10% Similarity=-0.003 Sum_probs=63.8
Q ss_pred cCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCC---chHHHHHH
Q 005265 541 AGCLDEAKTLIEAM---------PMQPD-AVIWGSLLAACKVHRNIMLGEYVAKKLLEI-----EPSNS---GPYVLLSN 602 (705)
Q Consensus 541 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~ 602 (705)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.++++++++ .|+++ ..++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777776654 12333 347888888999999999999999999875 44444 45889999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 005265 603 MYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 603 ~~~~~g~~~~A~~~~~~~~~ 622 (705)
+|..+|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999875
No 209
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.40 E-value=0.0011 Score=55.35 Aligned_cols=91 Identities=13% Similarity=0.109 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhC-C-CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee
Q 005265 558 PDAVIWGSLLAACKVHR---NIMLGEYVAKKLLEIE-P-SNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCS 632 (705)
Q Consensus 558 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 632 (705)
++..+...+..++.+.+ +.++|..+++.+++.+ | ++...+..|+-+|.+.|++++|++.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~---------- 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh----------
Confidence 56666666666766666 5567777777777776 5 4456677777777788888888887777763
Q ss_pred EEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHHcCccc
Q 005265 633 WIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVP 674 (705)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~ 674 (705)
.+|...+.....+.+..++.+.|.+-
T Consensus 100 ----------------ieP~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 100 ----------------TEPQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred ----------------cCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 35556666666666667777766543
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.30 E-value=0.0011 Score=53.49 Aligned_cols=80 Identities=13% Similarity=-0.005 Sum_probs=56.2
Q ss_pred HHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005265 511 GRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLL 587 (705)
Q Consensus 511 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 587 (705)
|+..|+...+ ..|+ ...+..+...|.+.|++++|+..|++. ...| +...|..+..++...|++++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555543 3343 667777777777788888887777776 3333 46677778888888888888888888888
Q ss_pred hhCCCC
Q 005265 588 EIEPSN 593 (705)
Q Consensus 588 ~~~p~~ 593 (705)
++.|.+
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 877643
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.28 E-value=0.0059 Score=59.46 Aligned_cols=142 Identities=13% Similarity=0.049 Sum_probs=73.4
Q ss_pred CCChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 005265 454 ERDWVSWNAMIVGCA--QNG---YGTEALGLFKKMLLCGEKPDHV-TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL 527 (705)
Q Consensus 454 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 527 (705)
..+...|...+.+.. ..+ ...+|..+|++.++ ..|+.. .+..+..++.. . ...+. .+
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~----------~----~~~~~-~~ 253 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV----------R----HSQHP-LD 253 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH----------H----HHHSC-CC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH----------H----hccCC-Cc
Confidence 447777877776643 233 34778999999988 678753 44444433330 0 00010 00
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAMP-MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAE 606 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 606 (705)
...... ...|.+....+. ...+..++..+...+...|++++|...+++++.++|+ ...|..++.++.-
T Consensus 254 ~~~~~~----------l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~ 322 (372)
T 3ly7_A 254 EKQLAA----------LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM 322 (372)
T ss_dssp HHHHHH----------HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred hhhHHH----------HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 000000 112222222221 1234555555555555556666666666666666653 3445566666666
Q ss_pred cCChhHHHHHHHHHHhC
Q 005265 607 LGRWGEVVRVRKLMRKR 623 (705)
Q Consensus 607 ~g~~~~A~~~~~~~~~~ 623 (705)
.|++++|.+.+++....
T Consensus 323 ~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 66666666666666543
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.19 E-value=0.0015 Score=50.78 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=35.2
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 005265 535 VDLLGRAGCLDEAKTLIEAM-PMQP-DAV-IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPY 597 (705)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 597 (705)
...+.+.|++++|++.|++. ...| +.. .|..+..++...|++++|...|+++++++|++...+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455566666666666554 2233 334 555555556666666666666666666666655443
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.13 E-value=4.9e-05 Score=75.07 Aligned_cols=237 Identities=14% Similarity=0.148 Sum_probs=151.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhC
Q 005265 84 NVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAG 163 (705)
Q Consensus 84 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 163 (705)
.+.+|..|..+..+.+++.+|++-| +...|+..|..+|....+.|.+++-++++....+..- ++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 3456888888888888888887655 3445777888899999999999888888776655422 33444678888888
Q ss_pred CCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC------------------------CCcch
Q 005265 164 SVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE------------------------RNIVS 219 (705)
Q Consensus 164 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 219 (705)
.+++.+-.+++. .|+..-...+.+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 887654433321 35555556666666777777777777766542 46778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHH
Q 005265 220 WNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYA 299 (705)
Q Consensus 220 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 299 (705)
|..+-.+|...+.+.-|.-.--.+.- .||. ...++..|-..|.+++-+.+++..+.. -.....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHH
Confidence 99999999999888776544333321 1111 122344456667777766666665532 2455667777777777
Q ss_pred hcCChHHHHHHHhhC----CCC-------CcccHHHHHHHHHhcCCHHHHH
Q 005265 300 KCGKLNEARCVFDRM----PIR-------NVVSETSMVSGYAKASSVKSAR 339 (705)
Q Consensus 300 ~~g~~~~A~~~~~~~----~~~-------~~~~~~~li~~~~~~~~~~~A~ 339 (705)
+- ++++..+-++.. ..| ....|..++-.|++-..++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 65 344444443322 222 3345777777777777776553
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.12 E-value=0.0082 Score=50.16 Aligned_cols=112 Identities=10% Similarity=-0.118 Sum_probs=89.2
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHH
Q 005265 471 GYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGR----AGCLDE 546 (705)
Q Consensus 471 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 546 (705)
+++++|+++|++..+.| .|+.. +...|...+.+++|.++|+...+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998876 33333 666677778888899999988653 467778888888888 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 005265 547 AKTLIEAMPMQPDAVIWGSLLAACKV----HRNIMLGEYVAKKLLEIEP 591 (705)
Q Consensus 547 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 591 (705)
|.+.|++.-..-++..+..|...|.. .++.++|.+.++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988334577888888888888 8899999999999988743
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.11 E-value=0.0018 Score=65.87 Aligned_cols=92 Identities=12% Similarity=-0.055 Sum_probs=64.0
Q ss_pred cCcHHHHHHHHHHhHHhc--CCC---CC-hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 005265 505 AGLVEEGRKYFSSMSKEH--GLA---PL-KDHYTCMVDLLGRAGCLDEAKTLIEAM---------PMQPD-AVIWGSLLA 568 (705)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~ 568 (705)
.|++++|..++++..... -+. |+ ..+++.|..+|...|++++|+.+++++ +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666554321 112 22 456777778888888888888777765 23454 347888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhh-----CCCCCch
Q 005265 569 ACKVHRNIMLGEYVAKKLLEI-----EPSNSGP 596 (705)
Q Consensus 569 ~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~ 596 (705)
.|...|++++|+.++++++++ .|+++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999875 6777653
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.95 E-value=0.0026 Score=49.67 Aligned_cols=59 Identities=14% Similarity=0.154 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 458 VSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
..|..+...|...|++++|+..|++.++ ..|+. ..|..+..++...|++++|.+.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444444444444444 22322 23444444444444444444444443
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.94 E-value=0.0041 Score=63.38 Aligned_cols=96 Identities=13% Similarity=-0.049 Sum_probs=64.0
Q ss_pred HhccCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHH
Q 005265 502 CSHAGLVEEGRKYFSSMSKEH--GLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAM---------PMQPD-AVIWGS 565 (705)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 565 (705)
+...|++++|..++++..... -+.|+ ..+++.|..+|...|++++|+.+++++ +..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445566666666666554321 11122 446667777777777777777777654 23344 346788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh-----CCCCCchH
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEI-----EPSNSGPY 597 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~ 597 (705)
|...|...|++++|+.++++++++ .|+++.+-
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 888899999999999999999875 67776543
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.93 E-value=0.0015 Score=64.83 Aligned_cols=391 Identities=11% Similarity=0.076 Sum_probs=239.4
Q ss_pred CCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHHH
Q 005265 17 LDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLL 96 (705)
Q Consensus 17 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 96 (705)
-|+..|..++.++.+.|.+++..+.+.-..+.. -++.+=+.|+-+|++.+++.+-++... .||+.-...+..-|.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf 155 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCY 155 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHH
Confidence 578889999999999999999999877665553 444555789999999999776443322 277777777888888
Q ss_pred hcCChhHHHHHHhcCCC------------------------CCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChh
Q 005265 97 KWGFIDDASRLFASMPE------------------------RDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEY 152 (705)
Q Consensus 97 ~~g~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 152 (705)
..|.++.|.-+|..+.. .++.||..+-.+|...+.+.-|.-.--.+.- .+.
T Consensus 156 ~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----had 230 (624)
T 3lvg_A 156 DEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HAD 230 (624)
T ss_dssp HSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSS
T ss_pred HccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHH
Confidence 88888888888877641 3677999999999999988877655444432 122
Q ss_pred hHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC----C-------CcchHH
Q 005265 153 SFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE----R-------NIVSWN 221 (705)
Q Consensus 153 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-------~~~~~~ 221 (705)
-...++..|-..|.+++-..+++.-+.. -.....+++-|.-.|+|- +.++..+-++..-. | ....|.
T Consensus 231 eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ 308 (624)
T 3lvg_A 231 ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 308 (624)
T ss_dssp CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHH
Confidence 2345666788888888888888776632 134667888888888876 44554444433321 2 445699
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC-----------C---CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC
Q 005265 222 SLITCYEQNGPASDALEVFVRMMAS-----------G---IEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRND 287 (705)
Q Consensus 222 ~li~~~~~~g~~~~A~~~~~~m~~~-----------g---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 287 (705)
-++-.|.+..+++.|... |.+. . -..|...|--.+..|.... +..-.+++.-+... +.+
T Consensus 309 ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~pr--lDh- 381 (624)
T 3lvg_A 309 ELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK-PLLLNDLLMVLSPR--LDH- 381 (624)
T ss_dssp HHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHCTT--CCS-
T ss_pred HHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhC-hHHHHHHHHhcccc--CCh-
Confidence 999999999999877543 2211 0 1234444444444443221 11111111111000 111
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHH-HHHHHHHhcCCHHHHHHHHHhc------------CCCCeehHH
Q 005265 288 LVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSET-SMVSGYAKASSVKSARLMFTKM------------LERNVVSWN 354 (705)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~ 354 (705)
+..++.+.+.|++.-....+..+...|...-| ++-..|....+++.-+...+.- .+....-+.
T Consensus 382 ----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFR 457 (624)
T 3lvg_A 382 ----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFR 457 (624)
T ss_dssp ----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHH
T ss_pred ----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHH
Confidence 12345555666666666666666555554444 4555666666665433332222 122222222
Q ss_pred -HHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHH
Q 005265 355 -ALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLI 433 (705)
Q Consensus 355 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 433 (705)
+-...|.++++|++++.+.++ .+ .|.-.|...+.+++.+.+.++++..++.|- ...+.+.+
T Consensus 458 rIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elaeeLL~yFv~~g~---------~EcF~a~L 519 (624)
T 3lvg_A 458 RIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAEELLQWFLQEEK---------RECFGACL 519 (624)
T ss_dssp HHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHHHHHHHHHHHCS---------THHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHHHHHHHHHHcCc---------hHHHHHHH
Confidence 234556778888888776432 11 222334556778888999999999888763 23444555
Q ss_pred HHHHhcCCHHHHHHH
Q 005265 434 DMYMKCGSVEDGCRI 448 (705)
Q Consensus 434 ~~~~~~g~~~~A~~~ 448 (705)
-.|...=+++-++++
T Consensus 520 ytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 520 FTCYDLLRPDVVLET 534 (624)
T ss_dssp HHTSSSSSCHHHHHH
T ss_pred HHHhhccChHHHHHH
Confidence 555555556666554
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.92 E-value=0.005 Score=47.75 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=25.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hh-HHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 501 ACSHAGLVEEGRKYFSSMSKEHGLAPL-KD-HYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
.+...|++++|...|+.+.+. .|+ .. .+..+..+|.+.|++++|.+.|++.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555555555554432 232 33 4555555555555555555555544
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.89 E-value=0.019 Score=55.97 Aligned_cols=112 Identities=7% Similarity=-0.140 Sum_probs=66.2
Q ss_pred CCCChhhHHHHHHHHhc-----cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH
Q 005265 488 EKPDHVTMIGVLCACSH-----AGLVEEGRKYFSSMSKEHGLAPL-KDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAV 561 (705)
Q Consensus 488 ~~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 561 (705)
.+.+...|...+++... .....+|+.+|+++.+ +.|+ ...|..+..+|. .....+ ..+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~----------~~~~~~-~~~~~ 255 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDI----------VRHSQH-PLDEK 255 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH----------HHHHHS-CCCHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH----------HHhccC-CCchh
Confidence 34455677777765432 2335677888887764 3676 555555554444 011111 00111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
.... ...+.+. ...+...|.++.+|..++..+...|++++|...++++...+
T Consensus 256 ~~~~----------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 256 QLAA----------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HHHH----------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHH----------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 1111 1122221 12335679999999999999988999999999999999875
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.60 E-value=0.16 Score=40.58 Aligned_cols=141 Identities=10% Similarity=0.024 Sum_probs=101.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 005265 467 CAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDE 546 (705)
Q Consensus 467 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 546 (705)
+.-.|..++..++..+.... .+..-++-++.-....-+-+-..++++.+-+-+. ...+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--------------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcC--------------cHhhhcHHH
Confidence 34567788888888877763 2334555566555555556666666666533322 235677777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005265 547 AKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVV 626 (705)
Q Consensus 547 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 626 (705)
....+-.++ .+.......++....+|..++-.+++..++...|.++.....++.+|.+.|+..+|.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 777776664 234445666788889999999999999987777778888999999999999999999999999999974
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.52 E-value=0.3 Score=54.65 Aligned_cols=129 Identities=13% Similarity=0.076 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHH
Q 005265 292 NALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALG 371 (705)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 371 (705)
..++..+.+.|..+.|.++.+.- ..-.......|+++.|.++.+.+ .+...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHH
Confidence 66667777777777777655311 12233455678888888887665 345789999999999999999999
Q ss_pred HHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHc
Q 005265 372 LFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFET 451 (705)
Q Consensus 372 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (705)
.|.++.. |..+...+...++.+....+-+.....|. ++....+|.+.|++++|.+++.+
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 9987754 33444455556666665555555555443 23344456666777776665443
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.50 E-value=0.0095 Score=55.48 Aligned_cols=83 Identities=7% Similarity=0.049 Sum_probs=66.6
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCCCC-CchHHHHHHHHHhc-CChhH
Q 005265 544 LDEAKTLIEAM-PMQPD---AVIWGSLLAACKV-----HRNIMLGEYVAKKLLEIEPSN-SGPYVLLSNMYAEL-GRWGE 612 (705)
Q Consensus 544 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 612 (705)
..+|..++++. .+.|+ ...|..+...|.. -|+.++|++.|+++++++|+. ..++..++..++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666655 45666 4467777777777 499999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCc
Q 005265 613 VVRVRKLMRKRGVV 626 (705)
Q Consensus 613 A~~~~~~~~~~~~~ 626 (705)
|.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999876554
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.35 E-value=0.022 Score=45.56 Aligned_cols=88 Identities=13% Similarity=0.062 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhC-C-CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee
Q 005265 558 PDAVIWGSLLAACKVHRNIML---GEYVAKKLLEIE-P-SNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCS 632 (705)
Q Consensus 558 p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 632 (705)
|+..+-..+..++.+..+... ++.+++.+++.+ | ..-.....|+-++.+.|+|++|++..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~---------- 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------
Confidence 455555555555555444333 666666665554 3 2334456666667777777777777766663
Q ss_pred EEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHHcC
Q 005265 633 WIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVG 671 (705)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g 671 (705)
.+|.+.++..+...+..+|.+.|
T Consensus 103 ----------------~eP~n~QA~~Lk~~i~~~i~kdG 125 (126)
T 1nzn_A 103 ----------------TEPQNNQAKELERLIDKAMKKDG 125 (126)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHHC-
T ss_pred ----------------hCCCCHHHHHHHHHHHHHHHhcc
Confidence 34555555665555666666655
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.23 E-value=0.031 Score=43.81 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM-----P----MQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLL 600 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 600 (705)
-.-.|...+.+.|++..|...|+.+ + -.+...++..|..++.+.|+++.|...+++++++.|++..+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3444555566666666666665554 0 123466788899999999999999999999999999997765444
Q ss_pred H
Q 005265 601 S 601 (705)
Q Consensus 601 ~ 601 (705)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 226
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.13 E-value=0.14 Score=41.69 Aligned_cols=93 Identities=11% Similarity=0.021 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee
Q 005265 557 QPDAVIWGSLLAACKVHR---NIMLGEYVAKKLLEIEPS-NSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCS 632 (705)
Q Consensus 557 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 632 (705)
.|+..+--.+..++.+.. +..+++.+++.+....|. .-.....|+-++.+.|+|++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---------- 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------- 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence 456666666666665544 456788888888887774 334567788888889999999888888874
Q ss_pred EEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHHcCcccC
Q 005265 633 WIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVGYVPN 675 (705)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~ 675 (705)
..|.+.++..+-..+..+|.+.|.+--
T Consensus 106 ----------------~eP~n~QA~~Lk~~Ie~~i~kdGliG~ 132 (144)
T 1y8m_A 106 ----------------HERNNKQVGALKSMVEDKIQKETLKGV 132 (144)
T ss_dssp ----------------TCCCCHHHHHHHHHHHHHHHHTTTTTC
T ss_pred ----------------cCCCcHHHHHHHHHHHHHHHHhchhhh
Confidence 356667777777777788888776543
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.98 E-value=0.1 Score=58.58 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=91.2
Q ss_pred HhCCChHHHHH-HHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHH
Q 005265 127 AQHDRFSEALG-YFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCA 205 (705)
Q Consensus 127 ~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 205 (705)
...+++++|.+ ++..+ |+......++..+...|.++.|.++.+ +. ..-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHH
Confidence 44666666655 33211 112222555556666666666665532 11 1113345677899999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 005265 206 RRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLR 285 (705)
Q Consensus 206 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 285 (705)
.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....+-+.+...|
T Consensus 672 ~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~--- 737 (814)
T 3mkq_A 672 RDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG--- 737 (814)
T ss_dssp HHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT---
T ss_pred HHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 98887764 456899999999999999999999988764 4445555555666666555555555544
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHH
Q 005265 286 NDLVLGNALVDMYAKCGKLNEARCVF 311 (705)
Q Consensus 286 ~~~~~~~~li~~~~~~g~~~~A~~~~ 311 (705)
-++....+|.+.|++++|.+++
T Consensus 738 ----~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 738 ----KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----chHHHHHHHHHcCCHHHHHHHH
Confidence 1233444566677777777444
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.39 Score=41.06 Aligned_cols=130 Identities=12% Similarity=0.117 Sum_probs=86.1
Q ss_pred HHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHHHH
Q 005265 433 IDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEEGR 512 (705)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 512 (705)
.+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|++..+ +..+.-.|...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34456788999998887766 4677899999999999999999999887654 445555566677776665
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005265 513 KYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKL 586 (705)
Q Consensus 513 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 586 (705)
++-+....+ | -++.....+.-.|+++++.++|.+.+.-|... -....+|..+.|.++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 554433222 1 14555556677888888888888775322211 1133456666666665544
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.83 E-value=2.4 Score=44.98 Aligned_cols=263 Identities=8% Similarity=0.000 Sum_probs=132.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhc---CCCCeehHHHHHHHHHHcCC
Q 005265 289 VLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKASSVKSARLMFTKM---LERNVVSWNALIAGYTQNGE 365 (705)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~ 365 (705)
..-+.-+..+.+.+++......+.. ...+...-.....+....|+..+|......+ ....+..++.++..+.+.|.
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCC
Confidence 3334455566667777777765554 2223333334455555566655554544443 11233445555555554444
Q ss_pred hHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCc-HhHHHHHHHHHHhcCCHHH
Q 005265 366 NEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESD-IFVGNSLIDMYMKCGSVED 444 (705)
Q Consensus 366 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 444 (705)
..... ++.+| ......|+...|..+...+ +++ ......++..+. ++..
T Consensus 152 lt~~~-~~~R~----------------~~al~~~~~~~a~~l~~~l-----------~~~~~~~a~~~~al~~---~p~~ 200 (618)
T 1qsa_A 152 QDPLA-YLERI----------------RLAMKAGNTGLVTVLAGQM-----------PADYQTIASAIISLAN---NPNT 200 (618)
T ss_dssp SCHHH-HHHHH----------------HHHHHTTCHHHHHHHHHTC-----------CGGGHHHHHHHHHHHH---CGGG
T ss_pred CCHHH-HHHHH----------------HHHHHCCCHHHHHHHHHhC-----------CHHHHHHHHHHHHHHh---ChHh
Confidence 32211 11111 1222334444444443321 122 223333443333 2333
Q ss_pred HHHHHHccCCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChh--hHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 445 GCRIFETMVERDWV---SWNAMIVGCAQNGYGTEALGLFKKMLLCG-EKPDHV--TMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 445 A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
+....... .++.. .+...+.-+.+ .+.+.|...|....+.+ +.+... ....+.......+...++...+...
T Consensus 201 ~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~ 278 (618)
T 1qsa_A 201 VLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA 278 (618)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred HHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Confidence 34433332 22222 12222333333 47899999999887643 222221 2333333444555355666666654
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005265 519 SKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAMPMQP--DAVIWGSLLAACKVHRNIMLGEYVAKKLLE 588 (705)
Q Consensus 519 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 588 (705)
... .++.....-.+....+.|+++.|...|+.|+..+ ...-..-+..+....|+.++|..+|+++.+
T Consensus 279 ~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 279 IMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 332 2333333344445557899999999999996432 233334456677888999999999999875
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.78 E-value=0.045 Score=45.61 Aligned_cols=85 Identities=19% Similarity=0.078 Sum_probs=55.9
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHH
Q 005265 509 EEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAG---CLDEAKTLIEAM-PMQ-P--DAVIWGSLLAACKVHRNIMLGEY 581 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~~ 581 (705)
..+.+.|.+..+. + .++..+.-.+..++++++ +.++++.+++.. ... | +...+..|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444332 2 245555555666666666 445666666655 212 4 34566677778899999999999
Q ss_pred HHHHHHhhCCCCCc
Q 005265 582 VAKKLLEIEPSNSG 595 (705)
Q Consensus 582 ~~~~~~~~~p~~~~ 595 (705)
.++.+++++|++..
T Consensus 93 y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHCTTCHH
T ss_pred HHHHHHhcCCCCHH
Confidence 99999999998854
No 231
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.61 E-value=0.079 Score=40.30 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=51.0
Q ss_pred CChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 005265 526 PLKDHYTCMVDLLGRAGC---LDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNS 594 (705)
Q Consensus 526 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 594 (705)
+++..+..+..++...++ .++|..++++. ...| +...+..+...+.+.|++++|...++++++.+|+++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 446677777777654444 68888888877 4455 455666677778889999999999999999888843
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.41 E-value=0.096 Score=42.05 Aligned_cols=89 Identities=11% Similarity=0.043 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee
Q 005265 557 QPDAVIWGSLLAACKVHR---NIMLGEYVAKKLLEIEPS-NSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCS 632 (705)
Q Consensus 557 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 632 (705)
.|+..+--.+..++.+.. +..+|+.+++.+.+.+|. .-..+..|+-++.+.|++++|++..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~---------- 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------- 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----------
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence 456666555666655544 445788888888887774 345677888888999999999999888873
Q ss_pred EEEECCEEeEEeeCCcCCCChhHHHHHHHHHHHHHHHcC
Q 005265 633 WIEILGHVNVFMVKDKRHPLNKEIYLVLKMLTREMKRVG 671 (705)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g 671 (705)
.+|.+.++...-..+..+|.+.|
T Consensus 107 ----------------~eP~N~QA~~Lk~~Ie~ki~kd~ 129 (134)
T 3o48_A 107 ----------------HERNNKQVGALKSMVEDKIQKEE 129 (134)
T ss_dssp ----------------TCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------hCCCCHHHHHHHHHHHHHHHhhc
Confidence 46677777777677777777655
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.18 E-value=0.22 Score=38.79 Aligned_cols=64 Identities=13% Similarity=-0.032 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 559 DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIE-------PSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 559 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
+......+...+...|++..|..-++++++.. +....++..|+.+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44556678888999999999999999999862 23445789999999999999999999999874
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.10 E-value=1.4 Score=37.67 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=62.5
Q ss_pred hcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHH
Q 005265 331 KASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTH 410 (705)
Q Consensus 331 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 410 (705)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..+-+.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 344444444555544 3566788888888888888888888877654 33444445556666666655555
Q ss_pred HHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccC
Q 005265 411 VVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMV 453 (705)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 453 (705)
....|- ++.....+.-.|+++++.++|.+..
T Consensus 86 A~~~g~------------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 86 AQTRED------------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHTTC------------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHCcc------------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 555543 3344445556677777777776544
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.67 E-value=0.23 Score=40.76 Aligned_cols=54 Identities=6% Similarity=-0.134 Sum_probs=44.5
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 572 VHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 572 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
..+|.++|.++|+.++++...-+..|...+..-.++|+...|++++.+....+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 447899999999999888655566778888888899999999999999886554
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.16 Score=54.87 Aligned_cols=55 Identities=9% Similarity=-0.030 Sum_probs=51.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 567 LAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
...|...|+++.|+++.++++..-|.+..+|..|+.+|...|+|+.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3447789999999999999999999999999999999999999999999999885
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.88 E-value=0.11 Score=48.39 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=59.7
Q ss_pred HHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhc-----CChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCCH
Q 005265 509 EEGRKYFSSMSKEHGLAPL---KDHYTCMVDLLGRA-----GCLDEAKTLIEAM-PMQPD--AVIWGSLLAACKV-HRNI 576 (705)
Q Consensus 509 ~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~g~~ 576 (705)
..|...+++.. .+.|+ ...|..+...|.+. |+.++|.+.|++. .+.|+ ..++......++. .|+.
T Consensus 180 ~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34444444443 34555 44566666666663 6777777777766 44552 5555556666555 4778
Q ss_pred HHHHHHHHHHHhhCCCC-CchHHHHHHHHHhcCChhHHHHHHHHHH
Q 005265 577 MLGEYVAKKLLEIEPSN-SGPYVLLSNMYAELGRWGEVVRVRKLMR 621 (705)
Q Consensus 577 ~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 621 (705)
+++.+.+++++...|.. +. ..+. ..++-.+|..++.++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~--~~la----n~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPH--NKLL----VILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSS--CHHH----HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCC--hhHH----HHHHHHHHHHHHHHhH
Confidence 88888888888776653 22 1222 2334456666655543
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.85 E-value=4.6 Score=38.35 Aligned_cols=144 Identities=9% Similarity=0.049 Sum_probs=81.8
Q ss_pred HHHHcCChHHHHH----HHHHhhhCCCCcchhhHHHHHHHHhhcc-----cHHHHHHHHHHHHHhCCCCCCCCCCcHhHH
Q 005265 359 GYTQNGENEEALG----LFRLLKRESVCPTHYTFGNLLNACANLA-----DLQLGRQAHTHVVKHGLRFLSGEESDIFVG 429 (705)
Q Consensus 359 ~~~~~g~~~~A~~----~~~~m~~~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (705)
.+.+.|+...|-+ +.+...+.+++++......++..+.... ..+-......+..+.|-. ...++...
T Consensus 62 ~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~----~~Gdp~LH 137 (312)
T 2wpv_A 62 SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEY----KFGDPYLH 137 (312)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSC----TTCCHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCC----CCCCHHHH
Confidence 3445555544443 3444455677777777777776665432 122233344444444321 14577888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 005265 430 NSLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQN---GYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAG 506 (705)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 506 (705)
..+...|.+.|++.+|...|-.-...+...+-.++.-+... |...++--.. -..++ -|.-.|
T Consensus 138 ~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~RaVL-~yL~l~ 202 (312)
T 2wpv_A 138 NTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRLVF-NYLFIS 202 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHHHH-HHHHTT
T ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHH--------------HHHHH-HHHHhc
Confidence 99999999999999999888633323455555555444443 4433322211 11222 344567
Q ss_pred cHHHHHHHHHHhHHh
Q 005265 507 LVEEGRKYFSSMSKE 521 (705)
Q Consensus 507 ~~~~a~~~~~~~~~~ 521 (705)
+...|..+|+...+.
T Consensus 203 n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 203 NISFAHESKDIFLER 217 (312)
T ss_dssp BHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888866543
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.64 E-value=0.88 Score=36.36 Aligned_cols=71 Identities=18% Similarity=0.063 Sum_probs=47.6
Q ss_pred CChhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 005265 526 PLKDHYTCMVDLLGRAGCLDE---AKTLIEAM-PMQ-P--DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGP 596 (705)
Q Consensus 526 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 596 (705)
|+..+--.+..++.++.+..+ ++.+++.. ... | .......|.-++.+.|++++|.+.++.+++.+|++..+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 455555555566666665544 66666655 212 3 23345556667889999999999999999999988653
No 240
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.90 E-value=3 Score=33.46 Aligned_cols=48 Identities=8% Similarity=-0.033 Sum_probs=25.8
Q ss_pred hhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHcc
Q 005265 396 ANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETM 452 (705)
Q Consensus 396 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 452 (705)
.-.|..+++.++..+..+.. +..-||.+|--....-+-+...++++.+
T Consensus 18 ildG~v~qGveii~k~~~ss---------ni~E~NW~ICNiiD~a~C~y~v~vLd~I 65 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---------TKSEYNWFICNLLESIDCRYMFQVLDKI 65 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---------CHHHHTHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---------CccccceeeeecchhhchhHHHHHHHHH
Confidence 34577888888888777643 3444444443333333444444444443
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.32 E-value=1.9 Score=35.48 Aligned_cols=38 Identities=13% Similarity=0.351 Sum_probs=28.5
Q ss_pred CCChhHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCh
Q 005265 454 ERDWVSWNAMIVGCAQNGYG------TEALGLFKKMLLCGEKPDH 492 (705)
Q Consensus 454 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~ 492 (705)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k 53 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDK 53 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccc
Confidence 45778888888888878888 7778888887774 66653
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.26 E-value=11 Score=36.14 Aligned_cols=142 Identities=11% Similarity=0.048 Sum_probs=76.2
Q ss_pred HHHcCChHHHHHH----HHHhhhCCCCcchhhHHHHHHHHhhccc--H---HHHHHHHHHHHHhCCCCCCCCCCcHhHHH
Q 005265 360 YTQNGENEEALGL----FRLLKRESVCPTHYTFGNLLNACANLAD--L---QLGRQAHTHVVKHGLRFLSGEESDIFVGN 430 (705)
Q Consensus 360 ~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (705)
+.+.|+...|-++ ++-..+.++++|..+...++..+..... + .-..+...+-.+.|.. ..-++....
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~----~~Gdp~LH~ 140 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDY----PAGDPELHH 140 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSC----TTCCHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCC----CCCCHHHHH
Confidence 4444554443333 3444556677777766666666654432 1 1122233333344420 145778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHHH
Q 005265 431 SLIDMYMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVEE 510 (705)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 510 (705)
.+...|.+.+++.+|..-|-.-..+....+-.++.-+...+...++ |...-..++ -|.-.+++..
T Consensus 141 ~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~ 205 (336)
T 3lpz_A 141 VVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRA 205 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHH
Confidence 8999999999999999888532222335665554444443322211 112222222 3455678888
Q ss_pred HHHHHHHhHH
Q 005265 511 GRKYFSSMSK 520 (705)
Q Consensus 511 a~~~~~~~~~ 520 (705)
|..+++...+
T Consensus 206 A~~~~~~f~~ 215 (336)
T 3lpz_A 206 ANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777665543
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.27 E-value=26 Score=38.90 Aligned_cols=260 Identities=11% Similarity=0.029 Sum_probs=128.9
Q ss_pred HHHhcCChHHHHHHHhhCCCC----Ccc--cHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----------eehHHHHHHH
Q 005265 297 MYAKCGKLNEARCVFDRMPIR----NVV--SETSMVSGYAKASSVKSARLMFTKMLE-RN----------VVSWNALIAG 359 (705)
Q Consensus 297 ~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~li~~~~~~~~~~~A~~~~~~~~~-~~----------~~~~~~li~~ 359 (705)
+....|+.++++.++...... +.. .-..+.-++...|..+++..++..... .+ ...-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 455677777788877776642 111 112233445556655566665555432 12 1112223333
Q ss_pred HHHcCC-hHHHHHHHHHhhhCCCCcchhhHH--HHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHH-
Q 005265 360 YTQNGE-NEEALGLFRLLKRESVCPTHYTFG--NLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDM- 435 (705)
Q Consensus 360 ~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~- 435 (705)
++-.|. -+++.+.+..+....- +...... .+-..+...|+.+....++..+.+.. +..+...++-+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---------~e~vrR~aalgL 532 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---------HGNITRGLAVGL 532 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---------CHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---------cHHHHHHHHHHH
Confidence 333332 2456666666554321 1111111 12222345567666677776665421 22233333333
Q ss_pred -HHhcCCHHHHHHHHHccCC-CChh-HHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCcHH
Q 005265 436 -YMKCGSVEDGCRIFETMVE-RDWV-SWN---AMIVGCAQNGYGTEALGLFKKMLLCGEKPDHVTMIGVLCACSHAGLVE 509 (705)
Q Consensus 436 -~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 509 (705)
+.-.|+.+.+..+++.+.. .+.. -|. ++.-+|+..|+.....++++.+.+. ...+......+.-++...|+.+
T Consensus 533 Gll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCS
T ss_pred HhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHH
Confidence 3356777777777666542 3332 233 2344567778876666688877764 1222222222222344456655
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHH
Q 005265 510 EGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCL-DEAKTLIEAMPMQPDAVIWGSLLAA 569 (705)
Q Consensus 510 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~ 569 (705)
.+.++++.+.+ ...|.+..-.++.-+....|.. .+|.+++..+...+|..+-..-+-+
T Consensus 612 ~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 612 TVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp SHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 56666665533 2245555444444444445443 6777788777556666555444444
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.50 E-value=1.4 Score=33.08 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=37.8
Q ss_pred hhHHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005265 3 TQRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDV 63 (705)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 63 (705)
+++-+..+....+-|++......|++|.|.+++..|.++++-+...- .....+|..+++-
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 45555666666666777777777777777777777777777664332 2334456655553
No 245
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.04 E-value=18 Score=35.69 Aligned_cols=161 Identities=9% Similarity=-0.014 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC--------CChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCChhhH---
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVE--------RDWVSWNAMIVGCAQN-GYGTEALGLFKKMLLCGEKPDHVTM--- 495 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~--- 495 (705)
....|...|.+.|+.++..+++..... +.......++..+... +..+.-.++..+.++.. +-+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 445688888999999988888877642 1333455666666653 33344445554444321 0112233
Q ss_pred ---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHH
Q 005265 496 ---IGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAGCLDEAKTLIEAM-----PMQPDAVIW 563 (705)
Q Consensus 496 ---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~ 563 (705)
..+...|...|++.+|.+++..+.+...-..+ ..++..-+.+|...|++.++...+... .+.|++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 14667788888888888888888765432112 445666677888888888888887665 122343332
Q ss_pred H--HHHHH--HH-hcCCHHHHHHHHHHHHhh
Q 005265 564 G--SLLAA--CK-VHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 564 ~--~l~~~--~~-~~g~~~~a~~~~~~~~~~ 589 (705)
. -..++ +. ..+++..|...|-++.+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 2 22222 55 678888888888777643
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.96 E-value=26 Score=37.10 Aligned_cols=141 Identities=5% Similarity=-0.075 Sum_probs=73.6
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC-CCh-hhHHHHHHHHHhc
Q 005265 21 PFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN-KNV-FTWNSIITGLLKW 98 (705)
Q Consensus 21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~li~~~~~~ 98 (705)
.|....++. +.|++..+..+-..+....+.|-. .|..|...+ ......+....+++-+. |-. ..-+.-+..+.+.
T Consensus 9 ~~~~a~~a~-~~~~~~~~~~l~~~l~~~pL~~yl-~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~ 85 (618)
T 1qsa_A 9 RYAQIKQAW-DNRQMDVVEQMMPGLKDYPLYPYL-EYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARR 85 (618)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHSGGGTTSTTHHHH-HHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHhhcCCCcHHHH-HHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhC
Confidence 344444444 457777666665554332222221 222222222 12244555555555443 211 2234456667778
Q ss_pred CChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCC
Q 005265 99 GFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVD 166 (705)
Q Consensus 99 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 166 (705)
+++...+..+.. +..+...--....+....|+..+|......+-..|. ..+..+..++..+...|.
T Consensus 86 ~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 86 EDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGK 151 (618)
T ss_dssp TCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTC
T ss_pred CCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCC
Confidence 888888887766 333443334456667777887778777777766553 234455555555554443
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.63 E-value=17 Score=34.50 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=69.7
Q ss_pred hHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHH----HHHHHHCCCCCCHhHHHHHHHHHH
Q 005265 188 MGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEV----FVRMMASGIEPDEVTLASVVSACA 263 (705)
Q Consensus 188 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 263 (705)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|.++ ++...+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345556668888888888887644 33445667776665554 455556788888877777776664
Q ss_pred ccC--C---hHHHHHHHHHHHHcCC-CCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 005265 264 SLA--A---FKEGLQIHARLMRCEK-LRNDLVLGNALVDMYAKCGKLNEARCVFD 312 (705)
Q Consensus 264 ~~~--~---~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (705)
... . .+-..+...+..+.|+ ..-|+.....+...|.+.|++.+|+.-|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 422 1 1222233333333332 23466677777788888888888876554
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.08 E-value=2.2 Score=35.88 Aligned_cols=123 Identities=15% Similarity=0.032 Sum_probs=61.6
Q ss_pred CCCCCCh--hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHhC--
Q 005265 486 CGEKPDH--VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL-------KDHYTCMVDLLGRAGCLDEAKTLIEAM-- 554 (705)
Q Consensus 486 ~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 554 (705)
.|+.|.. .++..-+..+...|.++.|+-+.+.+....+..|+ ..++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3555543 34555566677777777777766655433222333 124555666777777777777776663
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 555 -----PMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 555 -----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.-.|+. ..++. . .... ..-.. .+.+...-..++.+|.+.|++++|+.+++.+..
T Consensus 92 ~~k~l~k~~s~--~~~~~-~---~ss~-------p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTG-N---SAST-------PQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHCC---------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHhcCCCc--ccccc-c---cCCC-------ccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 111111 00000 0 0000 00000 112223456799999999999999999987653
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.54 E-value=3.6 Score=34.54 Aligned_cols=28 Identities=7% Similarity=0.087 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005265 528 KDHYTCMVDLLGRAGCLDEAKTLIEAMP 555 (705)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 555 (705)
.+.---+..+|.+.|++++|+.+++..+
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3444446667777777777777777775
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.09 E-value=1.8 Score=43.16 Aligned_cols=68 Identities=12% Similarity=0.004 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCCc
Q 005265 563 WGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRK-----RGVVKQPG 630 (705)
Q Consensus 563 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 630 (705)
...++..+...|+++++...+..++..+|-+...|..++.+|.+.|+..+|++.|+...+ .|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 345667778889999999999999999999999999999999999999999999988754 37766553
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.23 E-value=8.9 Score=28.75 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=36.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhH
Q 005265 328 GYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTF 388 (705)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 388 (705)
.+...|++++|..+.+...-||...|-++.. .+.|..+++...+.++...| .|....|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445555555557766666777777765543 36677777777777776665 4444444
No 252
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.88 E-value=18 Score=31.90 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=6.9
Q ss_pred chhhHHHHHHHHHccCC
Q 005265 53 EIFIQNRLIDVYAKCGC 69 (705)
Q Consensus 53 ~~~~~~~ll~~~~~~g~ 69 (705)
+..+-...+..+++.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333334444444443
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.44 E-value=34 Score=39.66 Aligned_cols=143 Identities=15% Similarity=0.058 Sum_probs=82.0
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHccCCC----C--------
Q 005265 389 GNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGCRIFETMVER----D-------- 456 (705)
Q Consensus 389 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-------- 456 (705)
..++..+...+..+.+.++.... +.+....-.+..+|..+|++++|.+.|.+.... +
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~ 884 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLRE 884 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcc
Confidence 34555566666666666544322 344444456677888999999999999876421 0
Q ss_pred --------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--h--hHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 457 --------------WVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPDH--V--TMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 457 --------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~--~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
..-|.-++..+.+.+.++.++++-+..++..-.-+. . .|..+..++...|++++|-..+-.+
T Consensus 885 ~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 885 FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 012455566666677777777666665553211111 1 3556666666777777776666555
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChH
Q 005265 519 SKEHGLAPLKDHYTCMVDLLGRAGCLD 545 (705)
Q Consensus 519 ~~~~~~~p~~~~~~~l~~~~~~~g~~~ 545 (705)
... .-.......|+..++..|..+
T Consensus 965 pd~---~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 965 STT---PLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHS---SSCHHHHHHHHHHHHHHCCHH
T ss_pred CCH---HHHHHHHHHHHHHHHhCCChh
Confidence 321 122445555665555555443
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.17 E-value=8.2 Score=28.88 Aligned_cols=58 Identities=17% Similarity=0.046 Sum_probs=36.4
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCeehHHHHHHHHHHcCChHHHHHHHHHhhhCCCCcchhhH
Q 005265 328 GYAKASSVKSARLMFTKMLERNVVSWNALIAGYTQNGENEEALGLFRLLKRESVCPTHYTF 388 (705)
Q Consensus 328 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 388 (705)
.+...|++++|..+.+...-||...|-++.. .+.|..+++...+.++...| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445555555556666666677777765543 46787888877777777666 4444444
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.56 E-value=6.2 Score=29.76 Aligned_cols=62 Identities=11% Similarity=0.178 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHH
Q 005265 233 ASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVD 296 (705)
Q Consensus 233 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 296 (705)
.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...- .+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 34566667777777889999999999999999999999999998877653 333456666654
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.49 E-value=17 Score=29.63 Aligned_cols=71 Identities=10% Similarity=-0.007 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 525 APLKDHYTCMVDLLGRAGCLD---EAKTLIEAM-PMQP--DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 525 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
.|+..+--.+..++.++.+.+ +++.+++.. ...| .......|.-++.+.|++++|.+..+.+++.+|++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 344444444555555555433 455555554 1123 2334555666799999999999999999999999854
No 257
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=83.47 E-value=22 Score=30.96 Aligned_cols=75 Identities=8% Similarity=0.081 Sum_probs=32.3
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 005265 186 VYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACAS 264 (705)
Q Consensus 186 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 264 (705)
..+-...+.++.+.|+.+....+...+..++...-...+.++.+.|. .++...+..+... ++...-...+.++.+
T Consensus 121 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 121 WFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 33333334444444443333333333334444444555555555544 3344455554432 344444444444443
No 258
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.02 E-value=9.1 Score=41.45 Aligned_cols=51 Identities=16% Similarity=-0.050 Sum_probs=40.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 466 GCAQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 466 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
-+...|+++-|+++-++... ..|+. .+|..|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35567888888888888877 66776 48888888888888888888877766
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.65 E-value=4.6 Score=32.28 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=28.6
Q ss_pred hHHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHH
Q 005265 4 QRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLID 62 (705)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 62 (705)
++-+.++....+-|++......|++|.|.+++..|.++++-+...- .+...+|..+++
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3344444444455555555555555555555555555555543221 222334444443
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.39 E-value=27 Score=40.51 Aligned_cols=65 Identities=3% Similarity=-0.127 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc-----hHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005265 561 VIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG-----PYVLLSNMYAELGRWGEVVRVRKLMRKRGV 625 (705)
Q Consensus 561 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 625 (705)
.-|..++..+.+++.++.+.+..+.+++..+.+.. .|..+...+...|+|++|...+-.+.+...
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 34667777788999999999999999987543322 467788889999999999999988876543
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.58 E-value=47 Score=33.49 Aligned_cols=26 Identities=12% Similarity=0.046 Sum_probs=13.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHH
Q 005265 425 DIFVGNSLIDMYMKCGSVEDGCRIFE 450 (705)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~ 450 (705)
...+...++..+...|+++...+.+.
T Consensus 55 ~~r~l~~iv~l~~~~~~~~~l~e~i~ 80 (445)
T 4b4t_P 55 SKEVLAKIVDLLASRNKWDDLNEQLT 80 (445)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34455555555666666555544433
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.15 E-value=9.9 Score=37.71 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhH
Q 005265 461 NAMIVGCAQNGYGTEALGLFKKMLLCGEKP-DHVTMIGVLCACSHAGLVEEGRKYFSSMSK----EHGLAPLKDH 530 (705)
Q Consensus 461 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 530 (705)
..++..+...|++.+|+..+..+.. ..| +...+..++.++...|+..+|++.|+...+ +.|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455666677777777777777766 334 445777777777777777777777766543 3466666544
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.84 E-value=43 Score=31.96 Aligned_cols=182 Identities=10% Similarity=-0.024 Sum_probs=102.9
Q ss_pred HHHHccCCh---hhHHHHHhccCCCChhhHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHH
Q 005265 62 DVYAKCGCL---YGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGY 138 (705)
Q Consensus 62 ~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 138 (705)
+.....|++ -+|.+. |.++..=|.+++++++|++++ ..-...+.+.|+...|.++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL-----------~~GA~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDIL-----------ASVSQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHH-----------HHHHHHHHHCCCcchHHHH
Confidence 344456776 566555 344555577777777777764 1223345556776665555
Q ss_pred H----HHhHhCCCCCChhhHHHHHHHhhCCCCcH-HHHHHHHHHH----HcC--CCCChhhHHHHHHHhhcCCChHHHHH
Q 005265 139 F----VKMHSENFALSEYSFGSALSACAGSVDFK-MGTQVHALLS----KSR--YSSDVYMGSALIDMYGKCGRVSCARR 207 (705)
Q Consensus 139 ~----~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 207 (705)
- +...+.++++|.....-++..+.....-+ .-..+.+.++ +.| ..-|+.....+...|.+.+++.+|..
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 4 55556788888888888888776655322 1223333333 333 33467777888888999999999988
Q ss_pred HHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005265 208 VFDGMRERNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMR 280 (705)
Q Consensus 208 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 280 (705)
-|-.-.++++..+..++.-+...+...++ +...-..++. |...+++..|..++....+
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 87432223335554444444443332222 1111222222 3345677777776655443
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.10 E-value=19 Score=26.98 Aligned_cols=57 Identities=11% Similarity=0.054 Sum_probs=27.9
Q ss_pred CChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHH
Q 005265 33 KSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSI 91 (705)
Q Consensus 33 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 91 (705)
.++++|..+-+.+...+- ...+--.-+..+.+.|++++|..+.+...-||...|-+|
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~AL 77 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLAL 77 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHH
Confidence 345555555555555442 222222223344455555555555555555555555544
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.43 E-value=14 Score=29.54 Aligned_cols=61 Identities=10% Similarity=0.168 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHH
Q 005265 234 SDALEVFVRMMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVD 296 (705)
Q Consensus 234 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 296 (705)
-+..+-++.+....+.|++......+++|-+.+++..|.++++-+...- .+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 3455666677777899999999999999999999999999998877653 344556666654
No 266
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=75.81 E-value=39 Score=29.28 Aligned_cols=80 Identities=9% Similarity=0.123 Sum_probs=38.5
Q ss_pred CchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHHHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCC
Q 005265 52 SEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDR 131 (705)
Q Consensus 52 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 131 (705)
++..+....+.++++.|..+....+...+..++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.++
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 34444455555555555544444444444445555555555555555554444444444444444444444444444443
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=75.73 E-value=23 Score=28.42 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 005265 562 IWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSG 595 (705)
Q Consensus 562 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 595 (705)
.+.-|.-++.+.|+++.|.+..+.+++.+|++.-
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3344445566666666666666666666666654
No 268
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.58 E-value=1.1e+02 Score=34.16 Aligned_cols=266 Identities=12% Similarity=0.044 Sum_probs=129.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHH--HHHHccCChHHHHHHHHHHHHcCC-C-----CCChhHHHHHHHH
Q 005265 226 CYEQNGPASDALEVFVRMMASGIEPDEVTLASVV--SACASLAAFKEGLQIHARLMRCEK-L-----RNDLVLGNALVDM 297 (705)
Q Consensus 226 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~-~-----~~~~~~~~~li~~ 297 (705)
+....|+.++++.++......+-..+..+-...+ -+....|...++..++...+.... . .+......++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556677777777766554321112333322222 233344544556666666555431 0 0112222333333
Q ss_pred HHhcCC-hHHHHHHHhhCC-CCCccc--HH--HHHHHHHhcCCHHHHHHHHHhcCCC-C--eehHHHHHHHHHHcCChHH
Q 005265 298 YAKCGK-LNEARCVFDRMP-IRNVVS--ET--SMVSGYAKASSVKSARLMFTKMLER-N--VVSWNALIAGYTQNGENEE 368 (705)
Q Consensus 298 ~~~~g~-~~~A~~~~~~~~-~~~~~~--~~--~li~~~~~~~~~~~A~~~~~~~~~~-~--~~~~~~li~~~~~~g~~~~ 368 (705)
++-.|. -+++.+.+..+. ..+... .. ++...++..|+.+....++..+.+. + ..-.-.+.-++...|+.+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 332332 123333333332 222211 11 2223344666666666666554322 1 1222334445557788888
Q ss_pred HHHHHHHhhhCCCCcchhhHH--HHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 005265 369 ALGLFRLLKRESVCPTHYTFG--NLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDMYMKCGSVEDGC 446 (705)
Q Consensus 369 A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 446 (705)
+..+.+.+.... .|....-. .+.-+|+..|+.....+++..+.... ..++.-.-.+.-++...|+.+.+.
T Consensus 543 ~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-------~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 543 ADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-------NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp GHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-------cHHHHHHHHHHHHhhccCCHHHHH
Confidence 888888877531 22222222 23345677888887777888877643 233333322333344567777777
Q ss_pred HHHHccCC-CChhHHHH--HHHHHHHcCCh-HHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 005265 447 RIFETMVE-RDWVSWNA--MIVGCAQNGYG-TEALGLFKKMLLCGEKPDHVTMIGVLCAC 502 (705)
Q Consensus 447 ~~~~~~~~-~~~~~~~~--li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 502 (705)
++++.+.+ .|...-.. +.-+....|.. .+++.++..+.. .+|..+-...+.++
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 77775543 34443333 33334444443 578888888875 34554433333333
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.18 E-value=19 Score=27.04 Aligned_cols=50 Identities=10% Similarity=0.019 Sum_probs=25.1
Q ss_pred HHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCC
Q 005265 95 LLKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSEN 146 (705)
Q Consensus 95 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 146 (705)
+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 444555555555555555555555544422 24455555555555555544
No 270
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.14 E-value=42 Score=29.34 Aligned_cols=155 Identities=9% Similarity=-0.011 Sum_probs=90.6
Q ss_pred CCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHH
Q 005265 16 FLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGL 95 (705)
Q Consensus 16 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 95 (705)
.+|...=...+..+.+.+..+....+.+ +.+ .++..+-...+.++++.|+.+....+.+.+..++..+-...+.++
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL 105 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3455555555566666555333333333 332 356677777778888888766666666666667777777778888
Q ss_pred HhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHH
Q 005265 96 LKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHA 175 (705)
Q Consensus 96 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 175 (705)
.+.|+.+....+.+.+..++...-...+.++.+.|..+ +...+..+.. .++...-...+.++.+.++. .+...+.
T Consensus 106 ~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~ 180 (211)
T 3ltm_A 106 GQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE-RVRAAME 180 (211)
T ss_dssp HHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHH
T ss_pred HHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHH
Confidence 88887666656666666677666666666666666543 3444444443 24555555555665555542 3333334
Q ss_pred HHHH
Q 005265 176 LLSK 179 (705)
Q Consensus 176 ~~~~ 179 (705)
.+.+
T Consensus 181 ~~l~ 184 (211)
T 3ltm_A 181 KLAE 184 (211)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4433
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.81 E-value=28 Score=32.15 Aligned_cols=19 Identities=0% Similarity=-0.171 Sum_probs=9.0
Q ss_pred HHHHHccCChhhHHHHHhc
Q 005265 61 IDVYAKCGCLYGARKVFDK 79 (705)
Q Consensus 61 l~~~~~~g~~~~A~~~~~~ 79 (705)
+...+..|+.+-++.+++.
T Consensus 43 L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 43 LHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3334445555555555443
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.69 E-value=52 Score=30.15 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=23.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHh
Q 005265 468 AQNGYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSM 518 (705)
Q Consensus 468 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (705)
.+.|..++|++....-++. .|.. ..-..++..+|-.|++++|.+-++..
T Consensus 8 l~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3445555555555555542 3322 23334444555555555555555544
No 273
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.92 E-value=82 Score=31.69 Aligned_cols=95 Identities=9% Similarity=0.021 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCh---hhHHHHHHHHhccCcHHHHHHHHHHhHHh-cCC--CCC--hh
Q 005265 460 WNAMIVGCAQNGYGTEALGLFKKMLLC--GEKPDH---VTMIGVLCACSHAGLVEEGRKYFSSMSKE-HGL--APL--KD 529 (705)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~--~p~--~~ 529 (705)
...|...|...|++.+|.+++..+... |..+.. ..+...++.|...+++..|..++..+... ... .|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456778888999999999999998753 322221 25667778899999999999998876421 112 222 44
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 530 HYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
.+.+.+..+...+++.+|-..|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6778888899999999998877665
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.45 E-value=10 Score=34.82 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=52.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHH
Q 005265 536 DLLGRAGCLDEAKTLIEAM-PMQP-DAVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEV 613 (705)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 613 (705)
..+.+.|.+++|++....- ...| |...-..|+.-++..|++++|.+-++...+++|+... .+..|. ..=.|
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~----~a~~yr---~lI~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP----GASQLR---HLVKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH----HHHHHH---HHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH----HHHHHH---HHHHH
Confidence 3456778888887766554 3344 5666666777788888888888888888888886432 222221 12234
Q ss_pred HHHHHHHHhCCCc
Q 005265 614 VRVRKLMRKRGVV 626 (705)
Q Consensus 614 ~~~~~~~~~~~~~ 626 (705)
+..+..+...+..
T Consensus 78 E~~R~~vfaG~~~ 90 (273)
T 1zbp_A 78 AQARKDFAQGAAT 90 (273)
T ss_dssp HHHHHHHTTSCCC
T ss_pred HHHHHHHHcCCCC
Confidence 5556666554443
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.81 E-value=44 Score=29.08 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=56.3
Q ss_pred cCCHHHHHHHHHHHHhh--CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEeEEeeCCcCC
Q 005265 573 HRNIMLGEYVAKKLLEI--EPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVKQPGCSWIEILGHVNVFMVKDKRH 650 (705)
Q Consensus 573 ~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (705)
.++...+..+|..+... .-..+..|...+..+...|++.+|.++++.-.+++-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P----------------------- 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP----------------------- 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS-----------------------
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-----------------------
Confidence 44567888888888765 45566678899999999999999999998887766443
Q ss_pred CChhHHHHHHHHHHHHHHHcCcccC
Q 005265 651 PLNKEIYLVLKMLTREMKRVGYVPN 675 (705)
Q Consensus 651 ~~~~~~~~~l~~l~~~~~~~g~~~~ 675 (705)
.+..........+.|.+.+.+.+
T Consensus 149 --~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 149 --YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred --HHHHHHHHHHHHHHHHhcCCCCC
Confidence 23344555566677777776434
No 276
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=65.05 E-value=86 Score=33.35 Aligned_cols=82 Identities=6% Similarity=-0.054 Sum_probs=41.2
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCCCCCCcHhHHHHHHHH
Q 005265 356 LIAGYTQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLADLQLGRQAHTHVVKHGLRFLSGEESDIFVGNSLIDM 435 (705)
Q Consensus 356 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 435 (705)
....+.-.|+++.|+..+-.. ...+.+++...+..+.-.+ ....++. ... + .| ..-+..||..
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~---~~~~lls----~~~----~-~~-~lN~arLI~~ 362 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFK---IDSSTRL----TKK----P-KR-DIRFANILAN 362 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------------CHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCcc---CCCcccc----cCC----C-cc-cccHHHHHHH
Confidence 445566788899998887644 2455555555554432222 1111111 000 0 11 2225567777
Q ss_pred HHh---cCCHHHHHHHHHccCC
Q 005265 436 YMK---CGSVEDGCRIFETMVE 454 (705)
Q Consensus 436 ~~~---~g~~~~A~~~~~~~~~ 454 (705)
|.+ ..++..|.++|--+.-
T Consensus 363 Yt~~F~~td~~~Al~Y~~li~l 384 (661)
T 2qx5_A 363 YTKSFRYSDPRVAVEYLVLITL 384 (661)
T ss_dssp HHTTTTTTCHHHHHHHHHGGGG
T ss_pred HHHHhhcCCHHHHHHHHHHHhc
Confidence 754 5678888887766643
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.90 E-value=51 Score=30.22 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=11.0
Q ss_pred HHHHHhcCChhHHHHHHhcC
Q 005265 92 ITGLLKWGFIDDASRLFASM 111 (705)
Q Consensus 92 i~~~~~~g~~~~A~~~~~~~ 111 (705)
+...++.|+.+-+..+++.-
T Consensus 43 L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 43 LHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcC
Confidence 34445566666666555543
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.37 E-value=29 Score=34.88 Aligned_cols=60 Identities=13% Similarity=-0.035 Sum_probs=29.9
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL--KDHYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
+...+..-+.+.|+++.|.+.+.++.... ..+. ...+-.++.++...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKA-ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHH-TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44455555555555555555555554331 1111 444444555555555555555555443
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.21 E-value=44 Score=33.56 Aligned_cols=95 Identities=7% Similarity=-0.080 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHccCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCChhhH--
Q 005265 427 FVGNSLIDMYMKCGSVEDGCRIFETMVE------RDWVSWNAMIVGCAQNGYGTEALGLFKKMLLC---GEKPDHVTM-- 495 (705)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~-- 495 (705)
.+...+.+.|.++|+++.|.+.|.++.. .-+..+-.++..+...+++..+...+.+.... +-.|+...-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3556677888888888888888877642 13345666677777778888887777776542 222222211
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHh
Q 005265 496 IGVLCACSHAGLVEEGRKYFSSMSKE 521 (705)
Q Consensus 496 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (705)
..-...+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11111234566777777666665544
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.58 E-value=83 Score=25.93 Aligned_cols=49 Identities=10% Similarity=-0.039 Sum_probs=37.0
Q ss_pred HHHHHHHHHhh--CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 005265 579 GEYVAKKLLEI--EPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVK 627 (705)
Q Consensus 579 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 627 (705)
+..+|..+... .-..+..|...+..+...|++.+|.++++.-.+++-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 67778777764 44555668888888889999999999988877765443
No 281
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=55.80 E-value=1.6e+02 Score=29.27 Aligned_cols=83 Identities=8% Similarity=0.029 Sum_probs=40.6
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHcCCCCchhh--HHHHHHHHHccCChhhHHHHHhccCC---CChhhHHHHHHHHHhcC
Q 005265 25 LLDSCLRSKSVSDTRRVHARIIKSQFASEIFI--QNRLIDVYAKCGCLYGARKVFDKMSN---KNVFTWNSIITGLLKWG 99 (705)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 99 (705)
.|...+..|+.+-. +.+.+.|..++... ....+...+..|+.+-++-+++.-.. .+...++ .+...++.|
T Consensus 17 ~L~~Aa~~g~~~~v----~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIV----KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT-PLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHH----HHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC-HHHHHHHHT
T ss_pred HHHHHHHCCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHCC
Confidence 34445555665443 34445565554321 12334445566777766666664322 1211122 233445666
Q ss_pred ChhHHHHHHhcCC
Q 005265 100 FIDDASRLFASMP 112 (705)
Q Consensus 100 ~~~~A~~~~~~~~ 112 (705)
+.+-+.-+++.-.
T Consensus 92 ~~~~v~~Ll~~ga 104 (437)
T 1n11_A 92 HTNMVKLLLENNA 104 (437)
T ss_dssp CHHHHHHHHHHTC
T ss_pred CHHHHHHHHhCCC
Confidence 6666666665533
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.31 E-value=64 Score=28.64 Aligned_cols=86 Identities=7% Similarity=-0.057 Sum_probs=44.3
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHcCCCCchhh--HHHHHHHHHccCChhhHHHHHhccCCC---ChhhHHHHHHHHHhcC
Q 005265 25 LLDSCLRSKSVSDTRRVHARIIKSQFASEIFI--QNRLIDVYAKCGCLYGARKVFDKMSNK---NVFTWNSIITGLLKWG 99 (705)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 99 (705)
.|...++.|+.+....+.+.+.+.|..++... ..+.+...+..|+.+-++.+++.-..+ +..-++ .+...++.|
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~ 90 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT-AAHLACEHR 90 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcC
Confidence 34555667888877777777777765554321 122344445566666665555543222 111112 222334455
Q ss_pred ChhHHHHHHhcC
Q 005265 100 FIDDASRLFASM 111 (705)
Q Consensus 100 ~~~~A~~~~~~~ 111 (705)
+.+-+..+++..
T Consensus 91 ~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 91 SPTCLRALLDSA 102 (241)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC
Confidence 555555555443
No 283
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=51.73 E-value=41 Score=29.99 Aligned_cols=80 Identities=11% Similarity=0.052 Sum_probs=36.6
Q ss_pred HHHHhcCCChhhHHHHHHHHHHcCCCCchhh--HHHHHHHHHccCChhhHHHHHhccCC---CChhhHHHHHHHHHhcCC
Q 005265 26 LDSCLRSKSVSDTRRVHARIIKSQFASEIFI--QNRLIDVYAKCGCLYGARKVFDKMSN---KNVFTWNSIITGLLKWGF 100 (705)
Q Consensus 26 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 100 (705)
|...+..|+.+ +.+.+.+.|..++... ....+...+..|+.+-++.+++.-.. ++....+ .+...+..|+
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~ 89 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGST-CLHLAAKKGH 89 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCC-HHHHHHHTTC
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCC
Confidence 44444556654 4445555665544321 11233444456666666666554322 1211122 2233345566
Q ss_pred hhHHHHHHhc
Q 005265 101 IDDASRLFAS 110 (705)
Q Consensus 101 ~~~A~~~~~~ 110 (705)
.+-+..+++.
T Consensus 90 ~~~~~~Ll~~ 99 (237)
T 3b7b_A 90 YEVVQYLLSN 99 (237)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 6555555544
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.58 E-value=1.1e+02 Score=25.68 Aligned_cols=49 Identities=8% Similarity=-0.065 Sum_probs=37.1
Q ss_pred HHHHHHHHHhh--CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 005265 579 GEYVAKKLLEI--EPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVVK 627 (705)
Q Consensus 579 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 627 (705)
+..+|..+... .-..+..|...+..+...|++.+|.++++.-.+++-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 66677777664 44555668888888999999999999998877766443
No 285
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.41 E-value=84 Score=26.84 Aligned_cols=56 Identities=11% Similarity=0.183 Sum_probs=25.0
Q ss_pred HhhcCCChHHHHHHHhcc-CC---CCcchHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCC
Q 005265 195 MYGKCGRVSCARRVFDGM-RE---RNIVSWNSLITCYEQNGP-ASDALEVFVRMMASGIEPD 251 (705)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~ 251 (705)
..++.|+.+-+..+++.- .. +|..-++.+..+. ..++ ...-.++.+.+.+.|..|+
T Consensus 112 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV-GLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH-HSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH-HhccchhhHHHHHHHHHHCCCCCC
Confidence 344556666655555543 21 2222233333333 2332 2333455555556565554
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.00 E-value=67 Score=25.64 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCh
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVERD---WVSWNAMIVGCAQNGY--GTEALGLFKKMLLCGEKPDH 492 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 492 (705)
..+.++.=|...|+.++|.+.++++..|. ......+..++-+.+. .+.+..++..+...|+-+..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 34678888999999999999999997662 3344555555555432 35677888888877655443
No 287
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.74 E-value=56 Score=26.70 Aligned_cols=62 Identities=8% Similarity=0.079 Sum_probs=27.3
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccC
Q 005265 6 SVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCG 68 (705)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 68 (705)
+...+.+.|.++++.=.. +|+.+...+.+-.|.++++.+.+.+...+..|----++.+...|
T Consensus 9 ~~~~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 9 ALETLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 334444555554444333 33333333444555555555554444444333333344444444
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.97 E-value=1.3e+02 Score=27.68 Aligned_cols=184 Identities=6% Similarity=-0.069 Sum_probs=103.3
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC---CChhhHHHHHHHHHhcCCh
Q 005265 25 LLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN---KNVFTWNSIITGLLKWGFI 101 (705)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 101 (705)
.|...+..|+.+-+ +.+.+.|..++..--.+.+...+..|+.+-++.+++.-.. ++..-++.| ...+..|+.
T Consensus 34 ~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~g~~ 108 (285)
T 3kea_A 34 ASYYAIADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL-YYAVDSGNM 108 (285)
T ss_dssp HHHHHHHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCH
T ss_pred HHHHHHHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHH-HHHHHcCCH
Confidence 45555566776544 4455567555544334556667788998888888876433 233233333 344677888
Q ss_pred hHHHHHHhcCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChh-hHHHHHHHhhCCCCcHHHHHHHHHH
Q 005265 102 DDASRLFASMPE---RDQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEY-SFGSALSACAGSVDFKMGTQVHALL 177 (705)
Q Consensus 102 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~ 177 (705)
+-+.-+++.-.. ++...|.+.+...+..|+.+- .+.+.+.|..+... .-.+.+...+..|+.+.+..+++.-
T Consensus 109 ~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 109 QTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp HHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcC
Confidence 877777776433 344444456666667777653 44445555444222 3445555666778887776666553
Q ss_pred HHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcc
Q 005265 178 SKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIV 218 (705)
Q Consensus 178 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 218 (705)
...... +..-.+..+...++.|+.+-+.-+++.-..++..
T Consensus 185 ad~n~~-~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 185 TSTNTN-NSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSA 224 (285)
T ss_dssp HHTCTT-CCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTT
T ss_pred CCCCcc-cCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 332211 2122222344455677877777666654444443
No 289
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=44.54 E-value=2.1e+02 Score=27.02 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=44.9
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 551 IEAMPMQPD--AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 551 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
|...+++|. ..++..-+..+.+++++.-|-.+.++++++.|+.. ..++|.+++..-.+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 444456664 44667777889999999999999999999998532 3566888887776543
No 290
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=42.91 E-value=1.7e+02 Score=25.46 Aligned_cols=56 Identities=14% Similarity=0.037 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 005265 471 GYGTEALGLFKKMLLCGEKPDH-VTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL 527 (705)
Q Consensus 471 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 527 (705)
+...++.++|..|...|+--.. ..|......+...|++.+|.++|+.-++. +..|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 3355777777777777665544 34556666666677777777777766554 44553
No 291
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=42.13 E-value=67 Score=28.39 Aligned_cols=20 Identities=15% Similarity=-0.014 Sum_probs=10.2
Q ss_pred HHHHHHccCChhhHHHHHhc
Q 005265 60 LIDVYAKCGCLYGARKVFDK 79 (705)
Q Consensus 60 ll~~~~~~g~~~~A~~~~~~ 79 (705)
.+...+..|+.+-++-+++.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHc
Confidence 34444455565555555544
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.62 E-value=1.9e+02 Score=25.31 Aligned_cols=13 Identities=15% Similarity=0.355 Sum_probs=6.2
Q ss_pred ccCChhhHHHHHh
Q 005265 66 KCGCLYGARKVFD 78 (705)
Q Consensus 66 ~~g~~~~A~~~~~ 78 (705)
+.|+++..+.+++
T Consensus 18 ~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 18 QYGIYERCRELVE 30 (240)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHH
Confidence 4455544444444
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=38.91 E-value=1.4e+02 Score=27.48 Aligned_cols=183 Identities=11% Similarity=-0.007 Sum_probs=103.5
Q ss_pred HHHHHHHccCChhhHHHHHhccCCCChhhHHHHHHHHHhcCChhHHHHHHhcCCCC---CcccHHHHHHHHHhCCChHHH
Q 005265 59 RLIDVYAKCGCLYGARKVFDKMSNKNVFTWNSIITGLLKWGFIDDASRLFASMPER---DQCSWNSMVSGFAQHDRFSEA 135 (705)
Q Consensus 59 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a 135 (705)
+.+...+..|+.+-++.+++.-..++...-.+.+...+..|+.+-+..+++.-..+ |...++.| ...+..|+.+-+
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~g~~~~v 111 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL-YYAVDSGNMQTV 111 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHH-HHHHHcCCHHHH
Confidence 34555567889888888887633322211223455567788888888888764433 33334444 344566766544
Q ss_pred HHHHHHhHhCCCCCChh---hHHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChh-hHHHHHHHhhcCCChHHHHHHHhc
Q 005265 136 LGYFVKMHSENFALSEY---SFGSALSACAGSVDFKMGTQVHALLSKSRYSSDVY-MGSALIDMYGKCGRVSCARRVFDG 211 (705)
Q Consensus 136 ~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 211 (705)
.-+++ .|..++.. -+.+.+...+..|+.+ +.+.+++.|..+... ...+.+...+..|+.+-+.-+++.
T Consensus 112 ~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 112 KLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 44443 35544432 2234455555667665 445555566544222 445566667788998888877765
Q ss_pred cCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhH
Q 005265 212 MRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVT 254 (705)
Q Consensus 212 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 254 (705)
-.. ++..-++..+...+..|+. ++.+.+.+.|..|+...
T Consensus 184 gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 184 MTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred CCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 332 2323333334444555664 45566677788887765
No 294
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=38.77 E-value=77 Score=22.55 Aligned_cols=64 Identities=9% Similarity=0.111 Sum_probs=41.6
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhcCC-ChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCCh
Q 005265 6 SVKQIVGDLAFLDSSPFAKLLDSCLRSK-SVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCL 70 (705)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 70 (705)
+...+...|+.++..-. .+|..+...+ .+-.+.++++.+.+.+...+..+-...++.+.+.|-+
T Consensus 4 ~~~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 4 NNTALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34456677777766554 4566666554 5667778888887776666666666667777666644
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.51 E-value=65 Score=26.64 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCh
Q 005265 428 VGNSLIDMYMKCGSVEDGCRIFETMVERD---WVSWNAMIVGCAQNGY--GTEALGLFKKMLLCGEKPDH 492 (705)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 492 (705)
..+.++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45678888999999999999999997662 3344555555555432 34577788888776654443
No 296
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=38.45 E-value=1.7e+02 Score=24.34 Aligned_cols=104 Identities=11% Similarity=0.071 Sum_probs=48.3
Q ss_pred hhHHHHHhccCC--CChhhHHHHHHHHH---hcCChhHHHHHHhcCCC--CCcccHHHHHHHHHhC----CC--------
Q 005265 71 YGARKVFDKMSN--KNVFTWNSIITGLL---KWGFIDDASRLFASMPE--RDQCSWNSMVSGFAQH----DR-------- 131 (705)
Q Consensus 71 ~~A~~~~~~~~~--~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~----~~-------- 131 (705)
.....+|..+.. ....++.-++.++. .....+....+|+.+.. .+..++.-+...+... |.
T Consensus 56 ~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~ 135 (183)
T 1s6c_A 56 TYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKE 135 (183)
T ss_dssp HHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHHHhccccCcCccH
Confidence 344555555543 22234444433332 22233444555555442 2344555555554432 32
Q ss_pred ---hHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCCCCcHHHHHHHHH
Q 005265 132 ---FSEALGYFVKMHSENFALSEYSFGSALSACAGSVDFKMGTQVHAL 176 (705)
Q Consensus 132 ---~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 176 (705)
.+.+..+|+.+-..| -...+|.-++..+.....+-.....++.
T Consensus 136 ~~~~~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 136 DTPRQHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp --CHHHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhhc
Confidence 144555565553322 1235666666666665555555555543
No 297
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.62 E-value=3.1e+02 Score=26.99 Aligned_cols=194 Identities=11% Similarity=0.055 Sum_probs=100.3
Q ss_pred HHHHHHHhccCCCCchh--HHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchh--hHHHHHHHHHccCChhhHHHHHhcc
Q 005265 5 RSVKQIVGDLAFLDSSP--FAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIF--IQNRLIDVYAKCGCLYGARKVFDKM 80 (705)
Q Consensus 5 ~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~ 80 (705)
.+++.+.+.|..|+... ..+.|...+..|+.+-+. .+.+.|..++.. ...+.+...+..|+.+-++-+++.-
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 103 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK----YLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 103 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHH----HHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCC
Confidence 46677777787776432 234556666667765444 455566554432 1223455556778888777777764
Q ss_pred CCCC---hhhHHHHHHHHHhcCChhHHHHHHhcCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhh-
Q 005265 81 SNKN---VFTWNSIITGLLKWGFIDDASRLFASMPER---DQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYS- 153 (705)
Q Consensus 81 ~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~- 153 (705)
..++ ...++ -+...++.|+.+-+..+++.-... +...++ .+...+..|+.+- ++.+.+.|..|+...
T Consensus 104 a~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~ 177 (437)
T 1n11_A 104 ANPNLATTAGHT-PLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVRV----AELLLERDAHPNAAGK 177 (437)
T ss_dssp CCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCS
T ss_pred CCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHHH----HHHHHhCCCCCCCCCC
Confidence 3322 22222 334456778888888887764432 222223 3344455666543 344445555444321
Q ss_pred -HHHHHHHhhCCCCcHHHHHHHHHHHHcCCCCChhh--HHHHHHHhhcCCChHHHHHHHhcc
Q 005265 154 -FGSALSACAGSVDFKMGTQVHALLSKSRYSSDVYM--GSALIDMYGKCGRVSCARRVFDGM 212 (705)
Q Consensus 154 -~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~ 212 (705)
-.+.+...+..|+.+ +.+.+.+.|..++... ..+.+...++.|+.+-+..+++.-
T Consensus 178 ~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 178 NGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp SCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 112233333445543 3444455555443321 112334445667777666666543
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.04 E-value=1.3e+02 Score=23.96 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCC---eehHHHHHHHHHHcCC--hHHHHHHHHHhhhCCCCcch
Q 005265 324 SMVSGYAKASSVKSARLMFTKMLERN---VVSWNALIAGYTQNGE--NEEALGLFRLLKRESVCPTH 385 (705)
Q Consensus 324 ~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 385 (705)
.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+..
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 34444555555555556666554441 1222333344444332 34566777777766654433
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.87 E-value=1.1e+02 Score=27.60 Aligned_cols=87 Identities=9% Similarity=-0.072 Sum_probs=44.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCC----ChhhHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 005265 464 IVGCAQNGYGTEALGLFKKMLLC--GEKP----DHVTMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDL 537 (705)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 537 (705)
+..+....++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+.+ . ..++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~---~~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L---SSNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H---TCSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H---hcCCHHHHHHHHHH
Confidence 45566667777777766655432 2222 1112222222222222222333333333 1 13455556666778
Q ss_pred HHhcCChHHHHHHHHhC
Q 005265 538 LGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 538 ~~~~g~~~~A~~~~~~~ 554 (705)
+.+.|+.++|.++|=+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 88888888888877543
No 300
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=36.38 E-value=21 Score=32.67 Aligned_cols=54 Identities=9% Similarity=-0.072 Sum_probs=35.1
Q ss_pred HHHHhcCCChhhHHHHHHHHHHcCCCCchhh-------HHHHHHHHH--ccCChhhHHHHHhc
Q 005265 26 LDSCLRSKSVSDTRRVHARIIKSQFASEIFI-------QNRLIDVYA--KCGCLYGARKVFDK 79 (705)
Q Consensus 26 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll~~~~--~~g~~~~A~~~~~~ 79 (705)
|...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-++.+++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 4445567888888888888888886666443 233433332 56777777666664
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.12 E-value=1.6e+02 Score=25.90 Aligned_cols=26 Identities=4% Similarity=-0.100 Sum_probs=13.1
Q ss_pred HHHHhCCChHHHHHHHHHhHhCCCCC
Q 005265 124 SGFAQHDRFSEALGYFVKMHSENFAL 149 (705)
Q Consensus 124 ~~~~~~~~~~~a~~~~~~m~~~g~~p 149 (705)
...++.|+.+.+..+++.+.+.|..+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 33444556555555555554444443
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.29 E-value=2.7e+02 Score=31.28 Aligned_cols=86 Identities=2% Similarity=-0.238 Sum_probs=42.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCC-----------------
Q 005265 498 VLCACSHAGLVEEGRKYFSSMSKEHGLAPLKDHYTCMVDLLGRAGCLDEAKTLIEAM--PMQP----------------- 558 (705)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p----------------- 558 (705)
++..|...|.++-+.++...+ +.++..--.+..+|...|++++|...|+++ ++.+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 444555555555554433211 122222223455566666666666666655 1110
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 005265 559 ------DAVIWGSLLAACKVHRNIMLGEYVAKKLLEI 589 (705)
Q Consensus 559 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 589 (705)
...-|..++..+.+++-++.+.+..+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1123444555555666666666666666654
No 303
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.92 E-value=2e+02 Score=27.49 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCC
Q 005265 292 NALVDMYAKCGKLNEARCVFDRMPIR 317 (705)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~~~~~ 317 (705)
..++.-|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 45666677777777777777777654
No 304
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.92 E-value=2.3e+02 Score=24.49 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=43.8
Q ss_pred HHHHHHH---HcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhccc-----HHHHHHHHHHHHHhCC
Q 005265 355 ALIAGYT---QNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLAD-----LQLGRQAHTHVVKHGL 416 (705)
Q Consensus 355 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 416 (705)
.+|+++. +..+++.|+-++-+|++.| .|....-..++.+....|. +..|...++.....|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3555554 5689999999999999999 7777777777777766653 3455556666666665
No 305
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=33.88 E-value=1.7e+02 Score=26.23 Aligned_cols=119 Identities=6% Similarity=-0.069 Sum_probs=56.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhH-------HHHHHHHHH--ccCChHHHHHHHHHHHHcCC--------CCCC
Q 005265 225 TCYEQNGPASDALEVFVRMMASGIEPDEVT-------LASVVSACA--SLAAFKEGLQIHARLMRCEK--------LRND 287 (705)
Q Consensus 225 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~--------~~~~ 287 (705)
...++.|+.+....+++.+...|..++... .+.|..+.. +.|+.+.+..+++.-...+. +...
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 344556666666666666655555444322 122332321 44665555555544322110 0000
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccc----------------HHHHHHHHHhcCCHHHHHHHHH
Q 005265 288 LVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVS----------------ETSMVSGYAKASSVKSARLMFT 343 (705)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----------------~~~li~~~~~~~~~~~A~~~~~ 343 (705)
.....+.+...+..|+.+-+.-+++.-...+... -.+.+...+..|+.+-+..+++
T Consensus 90 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 90 YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp SEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 0011223344456677777766666433322211 2234444556777777777777
No 306
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=33.61 E-value=1.8e+02 Score=25.36 Aligned_cols=14 Identities=21% Similarity=0.057 Sum_probs=6.3
Q ss_pred HccCChhhHHHHHh
Q 005265 65 AKCGCLYGARKVFD 78 (705)
Q Consensus 65 ~~~g~~~~A~~~~~ 78 (705)
++.|+++..+.+++
T Consensus 14 ~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 14 AYSGKLDELKERIL 27 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 34444444444443
No 307
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=32.42 E-value=61 Score=29.29 Aligned_cols=86 Identities=6% Similarity=-0.146 Sum_probs=48.9
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHcCCCCch-------hhHHHHHHHHHcc---CChhhHHHHHhccCCC-----------
Q 005265 25 LLDSCLRSKSVSDTRRVHARIIKSQFASEI-------FIQNRLIDVYAKC---GCLYGARKVFDKMSNK----------- 83 (705)
Q Consensus 25 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~----------- 83 (705)
.|...++.|+.+....+.+.+.+.|..++. .-.+.|.. .+.. |+.+-++.+++.-..+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~-A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMK-AVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHH-HHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHH-HHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 455566778888888888888888866553 23333333 3344 7777777766542211
Q ss_pred ---ChhhHHHHHHHHHhcCChhHHHHHHhcCC
Q 005265 84 ---NVFTWNSIITGLLKWGFIDDASRLFASMP 112 (705)
Q Consensus 84 ---~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 112 (705)
|..-++. +...+..|+.+-+..+++.-.
T Consensus 84 ~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~ga 114 (256)
T 2etb_A 84 TDEFYQGHSA-LHIAIEKRSLQCVKLLVENGA 114 (256)
T ss_dssp CSTTTTTCCH-HHHHHHTTCHHHHHHHHHTTC
T ss_pred ccccccCCCH-HHHHHHcCCHHHHHHHHHcCC
Confidence 1122222 333455667666666666543
No 308
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=32.40 E-value=1.4e+02 Score=30.56 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=37.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 005265 566 LLAACKVHRNIMLGEYVAKKLLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLM 620 (705)
Q Consensus 566 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 620 (705)
|.+..+-...++.|...|.++..+.|++..+|+.|+.+....|+.-+|.=.+-+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHH
Confidence 3333444556677788888888888888778888888877777766665444333
No 309
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=32.35 E-value=2.9e+02 Score=25.08 Aligned_cols=19 Identities=11% Similarity=-0.295 Sum_probs=8.9
Q ss_pred CcHhHHHHHHHHHHhcCCH
Q 005265 424 SDIFVGNSLIDMYMKCGSV 442 (705)
Q Consensus 424 ~~~~~~~~li~~~~~~g~~ 442 (705)
++..+-...+.++.+.|+.
T Consensus 204 ~~~~vR~~A~~aL~~~~~~ 222 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDK 222 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCG
T ss_pred CCHHHHHHHHHHHHHhCCH
Confidence 3444444444555555443
No 310
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.27 E-value=92 Score=25.57 Aligned_cols=64 Identities=6% Similarity=0.103 Sum_probs=39.4
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhcCC-ChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCCh
Q 005265 6 SVKQIVGDLAFLDSSPFAKLLDSCLRSK-SVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGCL 70 (705)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 70 (705)
+...+...|.+++..=.. +|..+...+ .+-.|.++++.+.+.+...+..|----|+.+...|-+
T Consensus 4 ~~~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 4 NNQALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 344566677777666554 455555555 5677777777777776555555544556666666543
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.17 E-value=97 Score=25.42 Aligned_cols=21 Identities=10% Similarity=0.316 Sum_probs=9.3
Q ss_pred HHHHHHccCChhhHHHHHhcc
Q 005265 60 LIDVYAKCGCLYGARKVFDKM 80 (705)
Q Consensus 60 ll~~~~~~g~~~~A~~~~~~~ 80 (705)
++..+...+..-.|.++++.+
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l 52 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSI 52 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHH
Confidence 333443444444455554444
No 312
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.07 E-value=77 Score=25.86 Aligned_cols=64 Identities=9% Similarity=0.032 Sum_probs=35.4
Q ss_pred hHHHHHHHhccCCCCchhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCC
Q 005265 4 QRSVKQIVGDLAFLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGC 69 (705)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 69 (705)
..+-+.+.+.|.+++..=-. +++.+...+ +-.|.++++.+.+.+...+..|----++.+...|-
T Consensus 4 ~~~~~~L~~~g~r~T~qR~~-Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 4 TDWKSDLRQRGYRLTPQRQL-VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp TTHHHHHHTTTCCCCHHHHH-HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCcCHHHHH-HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34555566667776665433 334444444 56677777777666655554444444555555553
No 313
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.86 E-value=1.1e+02 Score=27.43 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=13.6
Q ss_pred HHHHHhCCChHHHHHHHHHhH
Q 005265 123 VSGFAQHDRFSEALGYFVKMH 143 (705)
Q Consensus 123 i~~~~~~~~~~~a~~~~~~m~ 143 (705)
+..+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 555666677777777766554
No 314
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=30.69 E-value=3.4e+02 Score=25.42 Aligned_cols=53 Identities=6% Similarity=-0.022 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCCCCchhh---HHHHHHHHHccCChhhHHHHHhc
Q 005265 23 AKLLDSCLRSKSVSDTRRVHARIIKSQFASEIFI---QNRLIDVYAKCGCLYGARKVFDK 79 (705)
Q Consensus 23 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~A~~~~~~ 79 (705)
+++|...++.|+.+-... ++++|..++... -.+-+...+..|+.+-++-+++.
T Consensus 26 ~t~L~~Av~~g~~~~V~~----LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ 81 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQ----LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 81 (337)
T ss_dssp HHHHHHHHHTTCHHHHHH----HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHH----HHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 344555556677654444 445565554321 11233444566777666666654
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.67 E-value=1.3e+02 Score=25.09 Aligned_cols=57 Identities=7% Similarity=0.079 Sum_probs=32.1
Q ss_pred HHHHcCCCCchhhHHHHHHHHHccCChhhHHHHHhccCC------CChhhHHHHHHHHHhcCCh
Q 005265 44 RIIKSQFASEIFIQNRLIDVYAKCGCLYGARKVFDKMSN------KNVFTWNSIITGLLKWGFI 101 (705)
Q Consensus 44 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~ 101 (705)
.+.+.|++.+. --..++..+...++.-.|.++++.+.+ -+..|.-.-|..+...|-+
T Consensus 23 ~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 23 ILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34556666644 344566666666667777777776532 2333444445566666643
No 316
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.41 E-value=2.6e+02 Score=24.07 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=34.0
Q ss_pred HHHHH---HHcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhcc
Q 005265 356 LIAGY---TQNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLA 399 (705)
Q Consensus 356 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 399 (705)
+|+++ .+..+++.|+-++-+|++.|-.|....-..++.+....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 45554 456899999999999999998887777777777766555
No 317
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.40 E-value=1.2e+02 Score=31.08 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=32.8
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL---KDHYTCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
.++.+++.|...+.++.|..+.....--....++ ..-+-.+...+.-.+++.+|.+.+..+
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4666667777777777777777654200000011 111223345566667777777666654
No 318
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.20 E-value=78 Score=32.31 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005265 560 AVIWGSLLAACKVHRNIMLGEYVAKKLLEIEPSN-------SGPYVLLSNMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 560 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 622 (705)
...+|.++..|...+.++.|..+..+.. .|.. ...+..+|.++.-.++|.+|.+.+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3355666666666666666666666653 3322 12355677888888888888888777654
No 319
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=29.73 E-value=2.3e+02 Score=27.10 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=19.4
Q ss_pred HhcCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHH
Q 005265 96 LKWGFIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEALGYFVK 141 (705)
Q Consensus 96 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 141 (705)
+..|..+-+.-+++.-...+...-.+.+...+..|+.+-+..+++.
T Consensus 61 ~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 61 CKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 3445554444444443333221112233333445555555544444
No 320
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.64 E-value=2.4e+02 Score=23.23 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005265 459 SWNAMIVGCAQNGYGTEALGLFKKMLLCGEKPD 491 (705)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 491 (705)
.|......+...|++.+|.++|+.-++.+-+|-
T Consensus 103 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 103 LYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 444555555556666666666666666555553
No 321
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=29.49 E-value=2.5e+02 Score=23.59 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=52.6
Q ss_pred HHhcCCHHHHHHHHHccCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CC--------------h-hhHHHH
Q 005265 436 YMKCGSVEDGCRIFETMVERDWVSWNAMIVGCAQNGYGTEALGLFKKMLLCGEK--PD--------------H-VTMIGV 498 (705)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~--------------~-~~~~~l 498 (705)
+.-.|.+.+++-++.....-...-|..+ +|-+..++..|+..++.+++..+. || . ..++.+
T Consensus 43 LyyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~ 120 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLL 120 (242)
T ss_dssp HHHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHH
T ss_pred hhhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHH
Confidence 3446788888887776654444445544 567788999999999999865444 22 1 235555
Q ss_pred HHHHhccCcHHHHHHHHH
Q 005265 499 LCACSHAGLVEEGRKYFS 516 (705)
Q Consensus 499 l~~~~~~g~~~~a~~~~~ 516 (705)
...|...|+.++|+..+.
T Consensus 121 a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 121 GDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCHHHhhhHhh
Confidence 566667777777777766
No 322
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.88 E-value=1.2e+02 Score=25.04 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCC---eehHHHHHHHHHHcCC--hHHHHHHHHHhhhCCCCcc
Q 005265 324 SMVSGYAKASSVKSARLMFTKMLERN---VVSWNALIAGYTQNGE--NEEALGLFRLLKRESVCPT 384 (705)
Q Consensus 324 ~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 384 (705)
.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 34444444444455545555554431 1222333334444322 3446667777766664443
No 323
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.88 E-value=2.9e+02 Score=24.08 Aligned_cols=65 Identities=11% Similarity=0.196 Sum_probs=46.3
Q ss_pred hHHHHHHHHH---HcCChHHHHHHHHHhhhCCCCcchhhHHHHHHHHhhccc-----HHHHHHHHHHHHHhCC
Q 005265 352 SWNALIAGYT---QNGENEEALGLFRLLKRESVCPTHYTFGNLLNACANLAD-----LQLGRQAHTHVVKHGL 416 (705)
Q Consensus 352 ~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 416 (705)
.+-.+|+++. +..+++.|+-++-+|++.|-.|....-..++.+....|. +..|...++.....|.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3334556554 568999999999999999988887777777777766553 4455555666666665
No 324
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.79 E-value=60 Score=24.30 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=20.0
Q ss_pred ChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChHHH
Q 005265 100 FIDDASRLFASMPERDQCSWNSMVSGFAQHDRFSEA 135 (705)
Q Consensus 100 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 135 (705)
..+.|.++++.++.++..+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 455555566655555555566666666554544433
No 325
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.75 E-value=1.3e+02 Score=22.41 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=30.4
Q ss_pred CChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHH
Q 005265 200 GRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDAL 237 (705)
Q Consensus 200 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 237 (705)
...+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46888999999999888889999998887767655543
No 326
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=28.58 E-value=3.2e+02 Score=24.47 Aligned_cols=158 Identities=9% Similarity=0.070 Sum_probs=80.4
Q ss_pred CCCchhHHHHHHHHhcCCChhhHHHHHHHHHHc--CCCCchhhHHHHHHHHHccC-ChhhHHHHHhccCC--CChhhHHH
Q 005265 16 FLDSSPFAKLLDSCLRSKSVSDTRRVHARIIKS--QFASEIFIQNRLIDVYAKCG-CLYGARKVFDKMSN--KNVFTWNS 90 (705)
Q Consensus 16 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~ 90 (705)
.++...+..+..... -..++...+++..... .-..+..-+..++..+...+ .-..+..+|..+.. ....++..
T Consensus 73 ~l~~e~l~~l~~~~~--~s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~E 150 (256)
T 2jul_A 73 RHQPEGLDQLQAQTK--FTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFED 150 (256)
T ss_dssp ---CTHHHHHHHHTT--SCHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHH
T ss_pred cCCHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHH
Confidence 344444444444321 1234455555555432 12333334444444433222 23456778887754 23344444
Q ss_pred HHHHHH---hcCChhHHHHHHhcCCC--CCcccHHHHHHHHHhC----C-----------ChHHHHHHHHHhHhCCCCCC
Q 005265 91 IITGLL---KWGFIDDASRLFASMPE--RDQCSWNSMVSGFAQH----D-----------RFSEALGYFVKMHSENFALS 150 (705)
Q Consensus 91 li~~~~---~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~----~-----------~~~~a~~~~~~m~~~g~~p~ 150 (705)
++.++. .....+....+|+.+.. .+..++..+...+... | ..+.+..+|..+-..| -.
T Consensus 151 f~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG 228 (256)
T 2jul_A 151 FVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DG 228 (256)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TC
T ss_pred HHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CC
Confidence 444443 33345566677776653 3456666666655432 3 2345666666664332 12
Q ss_pred hhhHHHHHHHhhCCCCcHHHHHHHHHH
Q 005265 151 EYSFGSALSACAGSVDFKMGTQVHALL 177 (705)
Q Consensus 151 ~~~~~~ll~~~~~~~~~~~a~~~~~~~ 177 (705)
..++.-++..+.+...+-.+...++.+
T Consensus 229 ~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 229 VVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp SBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred cEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 356777777777777777777776654
No 327
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.41 E-value=3.9e+02 Score=25.36 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=8.4
Q ss_pred HHhcCCHHHHHHHHHc
Q 005265 436 YMKCGSVEDGCRIFET 451 (705)
Q Consensus 436 ~~~~g~~~~A~~~~~~ 451 (705)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3445565555555543
No 328
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=27.77 E-value=2.7e+02 Score=23.40 Aligned_cols=80 Identities=15% Similarity=0.050 Sum_probs=48.2
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----------------CCCCC-chHHHHH
Q 005265 540 RAGCLDEAKTLIEAMPMQPDAVIWGSLLAACKVHRNIMLGEYVAKKLLEI-----------------EPSNS-GPYVLLS 601 (705)
Q Consensus 540 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------------~p~~~-~~~~~l~ 601 (705)
-.|.+..++-++.... .....-|.+| ++.+..++..|...++.+++- +|.|. ..|..++
T Consensus 45 yngEY~R~Lf~L~~lN-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a 121 (242)
T 3kae_A 45 LNGEYTRALFHLHKLN-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLG 121 (242)
T ss_dssp HTTCHHHHHHHHHTCC-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHH
T ss_pred hcchHhHHHHHHHhcc-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHH
Confidence 4566666666555543 1112222222 244566777777777766622 23332 2477899
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 005265 602 NMYAELGRWGEVVRVRKLMRK 622 (705)
Q Consensus 602 ~~~~~~g~~~~A~~~~~~~~~ 622 (705)
.++.+.|+.+||.+.+..--.
T Consensus 122 ~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 122 DLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHhhhHhhhhcC
Confidence 999999999999999876543
No 329
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.71 E-value=2.6e+02 Score=24.68 Aligned_cols=50 Identities=12% Similarity=-0.034 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhh--CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005265 577 MLGEYVAKKLLEI--EPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRGVV 626 (705)
Q Consensus 577 ~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 626 (705)
+.+..+|..+... .-..+..|...+..+...|++.+|.++|+.-.+++-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3566777777664 4455566888888888899999999988877765543
No 330
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.10 E-value=1.5e+02 Score=23.62 Aligned_cols=60 Identities=7% Similarity=0.044 Sum_probs=32.1
Q ss_pred HHHhccCCCCchhHHHHHHHHhcCC-ChhhHHHHHHHHHHcCCCCchhhHHHHHHHHHccCC
Q 005265 9 QIVGDLAFLDSSPFAKLLDSCLRSK-SVSDTRRVHARIIKSQFASEIFIQNRLIDVYAKCGC 69 (705)
Q Consensus 9 ~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 69 (705)
.+.+.|.++++.=.. +|+.+...+ .+-.|.++++.+.+.+...+..|----++.+...|-
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 345566666555443 444444444 566666677666666555554444444555555543
No 331
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=26.87 E-value=3.1e+02 Score=26.53 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=15.6
Q ss_pred HHHHHHHHccCChhhHHHHHhccCCCC
Q 005265 58 NRLIDVYAKCGCLYGARKVFDKMSNKN 84 (705)
Q Consensus 58 ~~ll~~~~~~g~~~~A~~~~~~~~~~~ 84 (705)
..++.=|...|+.++|...++++..|+
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~ 42 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPK 42 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCch
Confidence 445555566666666666666655543
No 332
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.57 E-value=5e+02 Score=26.01 Aligned_cols=125 Identities=15% Similarity=0.128 Sum_probs=52.5
Q ss_pred cCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHH
Q 005265 180 SRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRE---RNIVSWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLA 256 (705)
Q Consensus 180 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 256 (705)
.|++--...|..-.+.+...|++++|.++--..+. ++..|.+.+-..=...|+..-.+..|..+.+.| +.+..--.
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESl 433 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESL 433 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhh
Confidence 34443333444444555555666666655544433 222333222222222233444444444444443 22332222
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 005265 257 SVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKLNEARCVFDRM 314 (705)
Q Consensus 257 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 314 (705)
.+.+.....|+.+ ++++.++.+.+..+...-..+ +..+...|..+|.+.
T Consensus 434 El~r~vL~q~r~~----llekWl~e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 434 ELCRPVLQQGRKQ----LLEKWLKEDKLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHHTTCHH----HHHHHHHHTCSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred HHhHHHHhccHHH----HHHHHHhcCCccccHHhHhhh-----hhcCHHHHHHHHHHc
Confidence 3333333444433 333333334355554443322 333555566555443
No 333
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.54 E-value=3.2e+02 Score=25.60 Aligned_cols=216 Identities=11% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHhHhCCCCCChhhHHHHHHHhhCC
Q 005265 88 WNSIITGLLKWGFIDDASRLFASMPER---DQCSWNSMVSGFAQHDRFSEALGYFVKMHSENFALSEYSFGSALSACAGS 164 (705)
Q Consensus 88 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 164 (705)
...+|.-|...|+.++|...++++..| ....-..+-.++-+...-.+....+-.-+..++-+.......+...+...
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q ss_pred CC--------cHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCC--hHHHHHHHhccCCCCcc----------------
Q 005265 165 VD--------FKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGR--VSCARRVFDGMRERNIV---------------- 218 (705)
Q Consensus 165 ~~--------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~---------------- 218 (705)
.+ ++..-.++..++..|+-|..+.....-..-+..|. +..|..++..=......
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eel 165 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHL 165 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHHH
Q ss_pred --hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCCh--HHHHHHHHHHHHcCCCCCChhHHHHH
Q 005265 219 --SWNSLITCYEQNGPASDALEVFVRMMASGIEPDEVTLASVVSACASLAAF--KEGLQIHARLMRCEKLRNDLVLGNAL 294 (705)
Q Consensus 219 --~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l 294 (705)
..+.++.-|...|+.++|.+.++++..-...+ ......+..++-+.++. +....++..+.+.+ +-+.......+
T Consensus 166 kkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~-~ls~~q~~~Gf 243 (307)
T 2zu6_B 166 VKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSS-TITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCC-CCCHHHHHHHH
Q ss_pred HHHHHhcCChH
Q 005265 295 VDMYAKCGKLN 305 (705)
Q Consensus 295 i~~~~~~g~~~ 305 (705)
...+....++.
T Consensus 244 ~~vl~~l~Dl~ 254 (307)
T 2zu6_B 244 ERIYNEIPDIN 254 (307)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccHhh
No 334
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.21 E-value=2.8e+02 Score=23.33 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=8.3
Q ss_pred hhcCCChHHHHHHHh
Q 005265 196 YGKCGRVSCARRVFD 210 (705)
Q Consensus 196 ~~~~g~~~~A~~~~~ 210 (705)
.+..|+.+-+..+++
T Consensus 79 A~~~~~~~~~~~Ll~ 93 (201)
T 3hra_A 79 AGAQGRTEILAYMLK 93 (201)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 345566666555553
No 335
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.81 E-value=3.4e+02 Score=23.44 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=14.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 005265 567 LAACKVHRNIMLGEYVAKKLLEIEPSN 593 (705)
Q Consensus 567 ~~~~~~~g~~~~a~~~~~~~~~~~p~~ 593 (705)
+..|.+.|.+++|.+++++....+|.+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~ 150 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSH 150 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----C
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCc
Confidence 344667777777777777666554444
No 336
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.81 E-value=1.8e+02 Score=20.45 Aligned_cols=60 Identities=5% Similarity=-0.011 Sum_probs=36.3
Q ss_pred HhHhCCCCCChhhHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCC
Q 005265 141 KMHSENFALSEYSFGSALSACAGSV-DFKMGTQVHALLSKSRYSSDVYMGSALIDMYGKCGR 201 (705)
Q Consensus 141 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 201 (705)
.|.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3556676666544 34555555543 455677788877777655566665556666665554
No 337
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.60 E-value=2.1e+02 Score=23.13 Aligned_cols=60 Identities=8% Similarity=0.031 Sum_probs=25.4
Q ss_pred HHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhcCCh
Q 005265 243 MMASGIEPDEVTLASVVSACASLAAFKEGLQIHARLMRCEKLRNDLVLGNALVDMYAKCGKL 304 (705)
Q Consensus 243 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 304 (705)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+ ...+..|.-.-++.+...|-+
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKF-PNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGC-TTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhC-CCCChhhHHHHHHHHHHCCCE
Confidence 3444544444322 22333333333444555555554443 333443434444455555443
No 338
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.78 E-value=3.7e+02 Score=23.21 Aligned_cols=16 Identities=19% Similarity=0.057 Sum_probs=7.8
Q ss_pred HHhcCChhHHHHHHhc
Q 005265 95 LLKWGFIDDASRLFAS 110 (705)
Q Consensus 95 ~~~~g~~~~A~~~~~~ 110 (705)
.++.|+.+....+++.
T Consensus 10 A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 10 AAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHTTCHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHh
Confidence 3444555555555543
No 339
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.55 E-value=4.3e+02 Score=23.84 Aligned_cols=82 Identities=6% Similarity=-0.058 Sum_probs=34.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhcC--CHHHHHHHHHhcCCCCeehHHHHHHHHHHc
Q 005265 286 NDLVLGNALVDMYAKCGKLNEARCVFDRMPIRNVVSETSMVSGYAKAS--SVKSARLMFTKMLERNVVSWNALIAGYTQN 363 (705)
Q Consensus 286 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 363 (705)
++..+....+.++...|+.+..-.+...+..++...-...+.++...+ ...-...+...+..++...-...+.++.+.
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp SCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 455555555555555554332222222233334333333344444333 222222333333445555555556666666
Q ss_pred CChH
Q 005265 364 GENE 367 (705)
Q Consensus 364 g~~~ 367 (705)
|...
T Consensus 220 ~~~~ 223 (280)
T 1oyz_A 220 KDKR 223 (280)
T ss_dssp TCGG
T ss_pred CCHh
Confidence 6443
No 340
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.96 E-value=1.7e+02 Score=25.58 Aligned_cols=26 Identities=15% Similarity=-0.032 Sum_probs=14.1
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCC
Q 005265 158 LSACAGSVDFKMGTQVHALLSKSRYS 183 (705)
Q Consensus 158 l~~~~~~~~~~~a~~~~~~~~~~g~~ 183 (705)
+...+..|+.+.+..+++.+++.|..
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 33444555666555555666665543
No 341
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.44 E-value=2.7e+02 Score=24.35 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hhHH-----HHHHHHHHhcCChHHHHHHHHhC
Q 005265 508 VEEGRKYFSSMSKEHGLAPL-KDHY-----TCMVDLLGRAGCLDEAKTLIEAM 554 (705)
Q Consensus 508 ~~~a~~~~~~~~~~~~~~p~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~ 554 (705)
++.|+.+|+.+.+...+... ...- -..+-.|.+.|.+++|.+++++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 46777777777665322222 1111 12345677888888888888876
No 342
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.39 E-value=2.4e+02 Score=20.56 Aligned_cols=66 Identities=9% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHH
Q 005265 170 GTQVHALLSKSRYSSDVYMGSALIDMYGKCGRVSCARRVFDGMRERNIVSWNSLITCYEQNGPASDALEV 239 (705)
Q Consensus 170 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 239 (705)
...+++.+.+. .+.+-.-.=..-......++|.++++.++.++..+|..++.++...+...-|..+
T Consensus 24 v~~lld~L~~~----~vlt~~~~e~I~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~~L 89 (94)
T 2p1h_A 24 TSYIMDHMISD----GFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALL 89 (94)
T ss_dssp HHHHHHHHHHH----TSSCHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHC----CCCCHHHHHHHHcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHHHH
No 343
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=21.36 E-value=6.7e+02 Score=25.64 Aligned_cols=68 Identities=10% Similarity=-0.059 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHH----HHHH-HHhhCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005265 557 QPDAVIWGSLLAACKVHRNIMLGEY----VAKK-LLEIEPSNSGPYVLLSNMYAELGRWGEVVRVRKLMRKRG 624 (705)
Q Consensus 557 ~p~~~~~~~l~~~~~~~g~~~~a~~----~~~~-~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 624 (705)
.+|......|-.-+..+|..++-.+ .++. +.+..|++......|-.-|.+.|++-+|.+++-.+-..+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 4566655566666777776544322 1111 112356666667777778899999999999999998764
No 344
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.88 E-value=5.9e+02 Score=28.51 Aligned_cols=48 Identities=4% Similarity=-0.145 Sum_probs=31.1
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcC
Q 005265 494 TMIGVLCACSHAGLVEEGRKYFSSMSKEHGLAPL----KDHYTCMVDLLGRAG 542 (705)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 542 (705)
-|..++..+.+.+.++-+.++-+.+.+... .-| ...|..+..+.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 577778888888888888887777765322 112 235666666666554
Done!