Query 005266
Match_columns 705
No_of_seqs 184 out of 196
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 20:44:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005266.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005266hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2300 Uncharacterized conser 100.0 3E-109 6E-114 878.7 56.5 601 2-703 4-629 (629)
2 PF10345 Cohesin_load: Cohesin 100.0 1.9E-57 4.2E-62 527.6 57.8 544 4-623 2-606 (608)
3 TIGR02917 PEP_TPR_lipo putativ 99.8 5.1E-15 1.1E-19 176.0 45.2 497 9-623 333-866 (899)
4 TIGR02917 PEP_TPR_lipo putativ 99.8 1.4E-14 3.1E-19 172.2 46.5 171 431-623 463-664 (899)
5 PRK11447 cellulose synthase su 99.7 4.9E-14 1.1E-18 175.9 46.6 440 53-622 277-739 (1157)
6 TIGR00990 3a0801s09 mitochondr 99.7 6.7E-13 1.4E-17 155.4 46.8 439 44-629 127-577 (615)
7 PRK11447 cellulose synthase su 99.7 6.8E-12 1.5E-16 156.9 50.8 460 8-623 115-700 (1157)
8 KOG4626 O-linked N-acetylgluco 99.6 1.3E-13 2.8E-18 152.4 25.7 426 47-625 51-487 (966)
9 PRK15174 Vi polysaccharide exp 99.6 9.1E-12 2E-16 146.9 40.8 152 438-613 251-410 (656)
10 PRK09782 bacteriophage N4 rece 99.5 4.6E-11 1E-15 145.3 40.4 115 38-177 36-151 (987)
11 TIGR00990 3a0801s09 mitochondr 99.5 6.7E-11 1.5E-15 138.6 40.1 402 87-623 128-537 (615)
12 PRK15174 Vi polysaccharide exp 99.5 8.8E-11 1.9E-15 138.6 39.3 338 45-623 42-381 (656)
13 KOG2002 TPR-containing nuclear 99.5 1.8E-10 3.9E-15 133.7 37.0 173 431-622 562-744 (1018)
14 KOG1840 Kinesin light chain [C 99.5 2.5E-11 5.5E-16 136.9 28.5 274 335-626 189-482 (508)
15 PRK09782 bacteriophage N4 rece 99.4 2E-09 4.3E-14 131.3 45.5 161 435-625 544-708 (987)
16 PRK10049 pgaA outer membrane p 99.4 5.6E-09 1.2E-13 125.5 45.7 415 19-622 29-455 (765)
17 KOG1130 Predicted G-alpha GTPa 99.4 7.4E-12 1.6E-16 133.3 16.0 260 350-631 61-352 (639)
18 KOG4626 O-linked N-acetylgluco 99.4 4.5E-10 9.7E-15 124.8 29.6 373 5-590 116-492 (966)
19 PRK10049 pgaA outer membrane p 99.3 4.1E-09 8.9E-14 126.7 37.5 393 5-582 49-455 (765)
20 KOG1840 Kinesin light chain [C 99.3 1.4E-10 3.1E-15 131.0 21.1 193 431-628 239-443 (508)
21 PRK11788 tetratricopeptide rep 99.2 3.2E-08 7E-13 108.6 35.8 93 438-583 219-311 (389)
22 PRK14574 hmsH outer membrane p 99.2 1.2E-07 2.7E-12 113.7 42.0 445 49-615 38-505 (822)
23 KOG1130 Predicted G-alpha GTPa 99.2 1.1E-10 2.4E-15 124.5 11.6 202 431-636 93-317 (639)
24 PRK11788 tetratricopeptide rep 99.1 1.4E-07 3.1E-12 103.4 33.5 197 346-623 109-311 (389)
25 KOG1941 Acetylcholine receptor 99.1 2.2E-08 4.7E-13 105.9 25.1 194 434-631 123-328 (518)
26 KOG2002 TPR-containing nuclear 99.1 1.8E-07 4E-12 109.2 33.2 484 4-584 232-746 (1018)
27 KOG2076 RNA polymerase III tra 99.1 3E-07 6.6E-12 106.8 34.8 378 39-612 134-544 (895)
28 KOG1173 Anaphase-promoting com 99.1 4.1E-08 8.9E-13 109.1 26.4 161 438-624 351-519 (611)
29 TIGR02521 type_IV_pilW type IV 99.1 3.8E-08 8.2E-13 97.7 23.8 196 344-621 31-230 (234)
30 PRK04841 transcriptional regul 99.1 3.4E-06 7.5E-11 103.1 45.3 227 346-628 533-765 (903)
31 KOG1126 DNA-binding cell divis 99.0 2.2E-08 4.8E-13 113.1 22.5 170 344-588 455-625 (638)
32 TIGR00540 hemY_coli hemY prote 99.0 8.2E-07 1.8E-11 99.3 34.2 142 432-591 262-407 (409)
33 PRK04841 transcriptional regul 99.0 5.9E-06 1.3E-10 101.1 44.0 345 53-591 417-768 (903)
34 PRK10747 putative protoheme IX 99.0 1.3E-06 2.8E-11 97.4 32.2 310 41-543 79-391 (398)
35 TIGR02521 type_IV_pilW type IV 98.9 9.3E-08 2E-12 94.8 20.4 166 431-623 29-198 (234)
36 PRK14574 hmsH outer membrane p 98.9 2E-05 4.4E-10 94.9 41.9 446 17-588 46-518 (822)
37 KOG2300 Uncharacterized conser 98.9 3.2E-05 6.9E-10 85.1 38.2 469 43-635 24-526 (629)
38 KOG0547 Translocase of outer m 98.8 1.4E-05 3E-10 88.0 33.4 434 83-625 111-568 (606)
39 cd05804 StaR_like StaR_like; a 98.8 4.9E-05 1.1E-09 82.4 36.6 152 438-597 191-350 (355)
40 cd05804 StaR_like StaR_like; a 98.8 8.6E-07 1.9E-11 96.1 22.3 206 342-621 4-213 (355)
41 PRK12370 invasion protein regu 98.8 2.9E-06 6.3E-11 98.6 27.3 161 425-615 330-494 (553)
42 TIGR03302 OM_YfiO outer membra 98.7 1.1E-06 2.4E-11 90.0 20.9 174 431-619 31-228 (235)
43 PRK11189 lipoprotein NlpI; Pro 98.7 2.3E-06 4.9E-11 91.6 23.5 164 431-623 96-265 (296)
44 COG3063 PilF Tfp pilus assembl 98.7 4.9E-07 1.1E-11 91.3 17.0 161 433-620 35-199 (250)
45 COG3063 PilF Tfp pilus assembl 98.7 1.3E-06 2.8E-11 88.2 20.0 196 343-620 34-233 (250)
46 KOG1126 DNA-binding cell divis 98.7 1.1E-07 2.3E-12 107.6 13.2 191 351-586 360-555 (638)
47 KOG1155 Anaphase-promoting com 98.7 0.00014 3E-09 79.9 35.1 193 351-623 337-536 (559)
48 PLN03218 maturation of RBCL 1; 98.7 0.0005 1.1E-08 85.3 43.7 132 434-581 650-781 (1060)
49 TIGR00540 hemY_coli hemY prote 98.6 7.4E-05 1.6E-09 83.6 33.3 124 54-200 93-216 (409)
50 PF13429 TPR_15: Tetratricopep 98.6 2.2E-07 4.8E-12 98.1 12.4 129 438-585 151-279 (280)
51 KOG0548 Molecular co-chaperone 98.6 0.0002 4.2E-09 80.1 34.9 428 56-623 13-455 (539)
52 PRK12370 invasion protein regu 98.6 1.4E-06 3E-11 101.2 19.4 166 428-621 290-468 (553)
53 KOG2003 TPR repeat-containing 98.6 7.1E-06 1.5E-10 89.1 22.7 159 434-617 456-615 (840)
54 KOG0547 Translocase of outer m 98.6 0.00018 3.9E-09 79.5 33.5 432 46-589 110-572 (606)
55 PF13424 TPR_12: Tetratricopep 98.6 3.9E-07 8.4E-12 77.1 10.5 74 512-586 4-78 (78)
56 PRK10747 putative protoheme IX 98.5 0.00012 2.6E-09 81.7 31.3 129 431-585 261-392 (398)
57 PF14938 SNAP: Soluble NSF att 98.5 3.9E-06 8.5E-11 89.2 18.5 179 436-623 38-225 (282)
58 KOG1941 Acetylcholine receptor 98.5 2.1E-06 4.5E-11 91.3 15.9 142 489-634 138-286 (518)
59 PLN03081 pentatricopeptide (PP 98.5 9.3E-05 2E-09 88.4 32.2 116 58-197 100-215 (697)
60 KOG4162 Predicted calmodulin-b 98.5 5.4E-05 1.2E-09 87.4 27.7 317 63-543 462-784 (799)
61 KOG1155 Anaphase-promoting com 98.5 7.4E-06 1.6E-10 89.6 19.8 166 431-625 328-497 (559)
62 PRK11189 lipoprotein NlpI; Pro 98.5 1.3E-05 2.8E-10 85.8 21.6 225 343-607 63-287 (296)
63 KOG4162 Predicted calmodulin-b 98.5 0.0003 6.5E-09 81.4 32.7 375 47-625 396-785 (799)
64 PF12569 NARP1: NMDA receptor- 98.5 0.0012 2.5E-08 76.0 36.9 382 88-610 6-391 (517)
65 PF10345 Cohesin_load: Cohesin 98.5 0.0042 9E-08 73.3 42.7 430 81-624 54-564 (608)
66 TIGR03302 OM_YfiO outer membra 98.5 1.7E-05 3.7E-10 81.2 20.1 180 343-580 32-229 (235)
67 PF13424 TPR_12: Tetratricopep 98.5 1.8E-06 3.9E-11 73.0 10.7 75 551-625 2-77 (78)
68 PF14938 SNAP: Soluble NSF att 98.4 6.7E-06 1.4E-10 87.4 17.1 151 447-622 29-183 (282)
69 PLN03077 Protein ECB2; Provisi 98.3 0.0032 7E-08 77.1 38.9 97 513-619 554-650 (857)
70 PLN03218 maturation of RBCL 1; 98.2 0.001 2.2E-08 82.6 32.3 171 432-623 613-783 (1060)
71 PRK15179 Vi polysaccharide bio 98.2 2.4E-05 5.2E-10 92.7 17.4 131 431-584 84-218 (694)
72 KOG1173 Anaphase-promoting com 98.2 0.0021 4.5E-08 72.4 30.1 175 428-626 307-487 (611)
73 PLN03077 Protein ECB2; Provisi 98.2 0.0064 1.4E-07 74.5 37.7 114 58-196 235-348 (857)
74 PLN03081 pentatricopeptide (PP 98.2 0.0026 5.6E-08 76.1 33.3 127 435-581 428-555 (697)
75 PRK15359 type III secretion sy 98.2 2.7E-05 6E-10 74.4 13.2 92 436-543 27-122 (144)
76 PF09976 TPR_21: Tetratricopep 98.2 5.3E-05 1.2E-09 72.2 15.1 97 513-620 48-144 (145)
77 KOG1129 TPR repeat-containing 98.2 2.9E-05 6.3E-10 81.8 13.7 224 351-624 230-459 (478)
78 CHL00033 ycf3 photosystem I as 98.2 6.1E-05 1.3E-09 73.4 15.3 113 431-587 33-146 (168)
79 PF13429 TPR_15: Tetratricopep 98.1 3.1E-05 6.8E-10 81.7 14.0 164 432-622 109-276 (280)
80 PRK10370 formate-dependent nit 98.1 0.00021 4.5E-09 72.1 19.1 101 427-543 67-174 (198)
81 PRK15359 type III secretion sy 98.1 2.9E-05 6.3E-10 74.2 12.0 107 452-584 12-122 (144)
82 PF09976 TPR_21: Tetratricopep 98.1 0.00019 4.1E-09 68.5 17.1 130 438-581 16-145 (145)
83 COG2956 Predicted N-acetylgluc 98.1 0.00056 1.2E-08 72.4 21.7 212 343-624 68-279 (389)
84 KOG1125 TPR repeat-containing 98.1 0.00019 4.1E-09 80.8 19.1 130 431-615 428-563 (579)
85 PRK02603 photosystem I assembl 98.1 9.3E-05 2E-09 72.6 14.8 107 429-585 31-144 (172)
86 KOG2003 TPR repeat-containing 98.1 0.0061 1.3E-07 66.9 29.2 181 4-202 200-391 (840)
87 CHL00033 ycf3 photosystem I as 98.0 8.5E-05 1.9E-09 72.4 13.3 110 512-625 34-144 (168)
88 KOG1129 TPR repeat-containing 98.0 0.0011 2.3E-08 70.4 21.7 95 438-541 363-457 (478)
89 PRK02603 photosystem I assembl 98.0 0.00022 4.9E-09 69.9 15.8 104 512-625 34-144 (172)
90 KOG0624 dsRNA-activated protei 98.0 0.004 8.6E-08 66.5 25.2 162 7-198 74-247 (504)
91 PRK15179 Vi polysaccharide bio 97.9 0.00027 5.8E-09 83.9 18.1 148 454-623 70-217 (694)
92 COG3071 HemY Uncharacterized e 97.9 0.014 3.1E-07 63.5 29.2 125 437-588 267-395 (400)
93 KOG1174 Anaphase-promoting com 97.9 0.061 1.3E-06 59.0 34.1 158 438-622 339-499 (564)
94 KOG0495 HAT repeat protein [RN 97.9 0.024 5.1E-07 65.1 31.1 158 438-621 589-746 (913)
95 KOG1127 TPR repeat-containing 97.9 0.025 5.4E-07 67.6 32.1 476 4-617 491-1030(1238)
96 KOG2076 RNA polymerase III tra 97.8 0.14 3E-06 61.0 38.4 151 5-181 139-289 (895)
97 KOG0550 Molecular chaperone (D 97.8 0.0015 3.3E-08 71.1 19.8 155 333-543 192-351 (486)
98 PF12862 Apc5: Anaphase-promot 97.8 0.00025 5.4E-09 62.9 11.6 82 523-605 8-92 (94)
99 TIGR02552 LcrH_SycD type III s 97.8 0.00028 6.1E-09 65.5 12.2 103 429-584 13-115 (135)
100 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00029 6.4E-09 63.2 11.8 103 514-623 3-105 (119)
101 PF12688 TPR_5: Tetratrico pep 97.8 0.00037 8.1E-09 64.7 12.4 104 433-542 1-104 (120)
102 PRK10153 DNA-binding transcrip 97.8 0.0005 1.1E-08 79.2 15.9 139 431-584 337-483 (517)
103 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00047 1E-08 61.8 12.0 105 433-543 2-106 (119)
104 cd00189 TPR Tetratricopeptide 97.7 0.0002 4.2E-09 59.2 7.9 94 515-621 2-95 (100)
105 KOG0550 Molecular chaperone (D 97.6 0.00036 7.8E-09 75.9 11.5 36 431-466 201-236 (486)
106 PF13414 TPR_11: TPR repeat; P 97.6 0.00029 6.2E-09 57.9 8.4 65 432-542 2-67 (69)
107 PF13414 TPR_11: TPR repeat; P 97.6 0.00021 4.5E-09 58.7 7.5 65 512-583 2-67 (69)
108 PRK15363 pathogenicity island 97.6 0.0011 2.5E-08 64.0 13.5 94 435-544 37-134 (157)
109 cd00189 TPR Tetratricopeptide 97.6 0.00055 1.2E-08 56.4 10.0 94 436-582 3-96 (100)
110 PRK10866 outer membrane biogen 97.6 0.019 4.1E-07 59.9 23.1 172 431-619 30-237 (243)
111 PRK10370 formate-dependent nit 97.6 0.001 2.2E-08 67.1 13.2 120 58-201 52-174 (198)
112 TIGR02552 LcrH_SycD type III s 97.5 0.00081 1.8E-08 62.4 11.1 111 66-200 4-114 (135)
113 KOG4555 TPR repeat-containing 97.5 0.0019 4.1E-08 60.4 12.7 100 437-585 47-146 (175)
114 PLN03088 SGT1, suppressor of 97.5 0.00089 1.9E-08 73.7 12.6 47 437-486 6-52 (356)
115 PF12569 NARP1: NMDA receptor- 97.5 0.21 4.6E-06 57.7 32.1 58 132-196 6-63 (517)
116 KOG0553 TPR repeat-containing 97.4 0.0011 2.5E-08 69.7 11.6 120 433-611 81-200 (304)
117 PRK10866 outer membrane biogen 97.4 0.014 3E-07 60.9 19.8 140 435-578 71-236 (243)
118 PF13525 YfiO: Outer membrane 97.4 0.029 6.3E-07 56.7 21.4 174 432-615 4-199 (203)
119 PF12688 TPR_5: Tetratrico pep 97.4 0.0063 1.4E-07 56.6 14.6 100 515-621 3-102 (120)
120 KOG1156 N-terminal acetyltrans 97.3 0.52 1.1E-05 54.5 34.9 430 15-594 85-552 (700)
121 PLN03088 SGT1, suppressor of 97.3 0.0029 6.4E-08 69.6 13.6 109 51-181 9-117 (356)
122 KOG1127 TPR repeat-containing 97.3 0.78 1.7E-05 55.5 36.5 82 54-152 467-548 (1238)
123 KOG0548 Molecular co-chaperone 97.3 0.21 4.6E-06 56.5 27.4 205 432-653 223-472 (539)
124 KOG0624 dsRNA-activated protei 97.2 0.45 9.9E-06 51.4 28.2 102 39-158 33-134 (504)
125 KOG1125 TPR repeat-containing 97.2 0.004 8.6E-08 70.5 13.3 216 423-658 309-559 (579)
126 PF12895 Apc3: Anaphase-promot 97.2 0.0024 5.1E-08 54.9 9.2 83 446-539 2-84 (84)
127 PRK15363 pathogenicity island 97.2 0.0057 1.2E-07 59.3 12.5 114 513-649 35-148 (157)
128 PF12895 Apc3: Anaphase-promot 97.2 0.0013 2.9E-08 56.4 7.3 82 58-155 2-83 (84)
129 PF09295 ChAPs: ChAPs (Chs5p-A 97.2 0.0054 1.2E-07 68.3 13.9 117 54-197 178-294 (395)
130 PF13432 TPR_16: Tetratricopep 97.2 0.0018 3.9E-08 52.6 7.6 61 437-543 1-61 (65)
131 COG5010 TadD Flp pilus assembl 97.1 0.011 2.4E-07 61.3 14.8 91 513-616 134-224 (257)
132 PF13525 YfiO: Outer membrane 97.1 0.043 9.3E-07 55.5 19.0 136 435-574 44-198 (203)
133 COG2956 Predicted N-acetylgluc 97.1 0.036 7.8E-07 59.2 18.2 201 431-649 67-274 (389)
134 KOG1128 Uncharacterized conser 97.1 0.0037 8E-08 72.4 11.7 161 430-625 454-618 (777)
135 KOG0495 HAT repeat protein [RN 97.0 1 2.3E-05 52.3 42.6 151 433-611 685-868 (913)
136 KOG1156 N-terminal acetyltrans 97.0 0.072 1.6E-06 61.3 20.8 166 434-622 76-247 (700)
137 PLN02789 farnesyltranstransfer 97.0 0.61 1.3E-05 50.7 27.4 215 343-608 38-269 (320)
138 COG5010 TadD Flp pilus assembl 97.0 0.0097 2.1E-07 61.7 12.3 125 434-581 101-229 (257)
139 COG3071 HemY Uncharacterized e 96.9 0.3 6.4E-06 53.6 23.8 308 41-465 79-393 (400)
140 KOG1174 Anaphase-promoting com 96.9 0.14 3.1E-06 56.3 21.1 165 431-621 230-395 (564)
141 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.0033 7.2E-08 70.1 9.0 67 428-494 70-140 (453)
142 KOG0543 FKBP-type peptidyl-pro 96.9 0.0063 1.4E-07 66.6 10.6 136 431-585 206-357 (397)
143 PF13432 TPR_16: Tetratricopep 96.8 0.0036 7.8E-08 50.8 6.0 60 517-583 1-60 (65)
144 PF09295 ChAPs: ChAPs (Chs5p-A 96.7 0.022 4.7E-07 63.5 13.7 120 10-155 174-293 (395)
145 PRK10803 tol-pal system protei 96.7 0.022 4.8E-07 60.1 12.9 93 444-543 154-247 (263)
146 KOG1586 Protein required for f 96.7 0.075 1.6E-06 54.5 15.8 118 444-586 25-146 (288)
147 COG2909 MalT ATP-dependent tra 96.7 1.4 3E-05 52.9 28.4 220 342-618 456-683 (894)
148 PF14559 TPR_19: Tetratricopep 96.6 0.0049 1.1E-07 50.2 5.9 54 57-117 3-56 (68)
149 PRK10153 DNA-binding transcrip 96.6 0.039 8.5E-07 63.8 14.9 137 468-623 337-482 (517)
150 KOG3060 Uncharacterized conser 96.5 0.72 1.6E-05 48.1 21.7 150 417-585 61-222 (289)
151 COG4235 Cytochrome c biogenesi 96.4 0.04 8.7E-07 58.4 12.8 107 423-543 146-257 (287)
152 KOG2376 Signal recognition par 96.4 0.32 7E-06 55.7 20.3 155 431-603 108-271 (652)
153 PRK15331 chaperone protein Sic 96.4 0.024 5.2E-07 55.3 10.0 113 513-652 37-149 (165)
154 KOG1915 Cell cycle control pro 96.4 2.4 5.3E-05 47.7 39.4 228 357-627 335-589 (677)
155 COG2909 MalT ATP-dependent tra 96.4 0.17 3.7E-06 60.3 18.6 146 431-585 413-568 (894)
156 PRK10803 tol-pal system protei 96.3 0.038 8.2E-07 58.4 11.9 106 43-159 141-246 (263)
157 PF13176 TPR_7: Tetratricopept 96.3 0.0096 2.1E-07 43.0 5.2 35 556-590 1-35 (36)
158 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.022 4.9E-07 63.6 9.6 67 513-583 75-141 (453)
159 PRK11906 transcriptional regul 96.2 0.07 1.5E-06 59.9 13.3 135 432-583 252-401 (458)
160 PRK15331 chaperone protein Sic 96.1 0.085 1.8E-06 51.5 12.2 111 435-601 39-149 (165)
161 PF12968 DUF3856: Domain of Un 96.1 0.47 1E-05 44.0 15.9 112 513-625 7-131 (144)
162 PF13371 TPR_9: Tetratricopept 96.0 0.029 6.2E-07 46.3 7.4 58 92-159 1-58 (73)
163 COG4783 Putative Zn-dependent 95.9 0.57 1.2E-05 52.7 19.1 76 92-181 346-421 (484)
164 KOG0553 TPR repeat-containing 95.9 0.043 9.2E-07 58.1 9.7 95 83-199 83-177 (304)
165 PRK14720 transcript cleavage f 95.9 0.069 1.5E-06 64.9 12.5 101 513-623 65-178 (906)
166 COG4235 Cytochrome c biogenesi 95.8 0.084 1.8E-06 56.0 11.5 99 513-624 156-257 (287)
167 KOG0543 FKBP-type peptidyl-pro 95.8 0.16 3.6E-06 55.8 13.9 129 35-177 197-334 (397)
168 COG4700 Uncharacterized protei 95.8 0.33 7.2E-06 48.4 14.5 135 435-589 91-228 (251)
169 PF07719 TPR_2: Tetratricopept 95.7 0.025 5.4E-07 39.4 4.9 33 433-465 1-33 (34)
170 PF00515 TPR_1: Tetratricopept 95.7 0.025 5.4E-07 39.7 4.9 33 433-465 1-33 (34)
171 PF04733 Coatomer_E: Coatomer 95.6 0.069 1.5E-06 57.2 10.2 121 441-578 139-260 (290)
172 KOG1585 Protein required for f 95.6 1.8 3.8E-05 45.1 19.4 37 336-372 23-59 (308)
173 PRK11906 transcriptional regul 95.6 0.31 6.7E-06 54.9 15.3 105 421-577 326-430 (458)
174 PF12968 DUF3856: Domain of Un 95.5 0.63 1.4E-05 43.1 14.3 104 439-544 15-131 (144)
175 KOG4555 TPR repeat-containing 95.5 0.49 1.1E-05 44.7 13.7 112 39-167 37-148 (175)
176 PF09986 DUF2225: Uncharacteri 95.4 0.11 2.5E-06 53.1 10.7 95 446-543 90-195 (214)
177 COG4783 Putative Zn-dependent 95.3 0.57 1.2E-05 52.7 16.0 158 13-197 241-400 (484)
178 KOG3060 Uncharacterized conser 95.2 1.3 2.8E-05 46.2 17.2 137 19-183 66-203 (289)
179 PF12862 Apc5: Anaphase-promot 95.2 0.16 3.5E-06 44.8 9.5 81 564-644 8-91 (94)
180 PF14559 TPR_19: Tetratricopep 95.1 0.054 1.2E-06 44.0 5.9 66 97-176 2-67 (68)
181 PF00515 TPR_1: Tetratricopept 95.1 0.048 1E-06 38.3 4.7 31 513-543 1-31 (34)
182 PF13374 TPR_10: Tetratricopep 95.0 0.051 1.1E-06 39.5 5.0 35 553-587 1-35 (42)
183 COG4105 ComL DNA uptake lipopr 95.0 1.7 3.8E-05 45.4 17.8 137 436-576 74-226 (254)
184 KOG1128 Uncharacterized conser 95.0 0.16 3.4E-06 59.4 11.1 165 433-623 398-582 (777)
185 PF07719 TPR_2: Tetratricopept 95.0 0.054 1.2E-06 37.7 4.7 31 513-543 1-31 (34)
186 PLN02789 farnesyltranstransfer 95.0 1.1 2.4E-05 48.8 17.0 150 429-607 67-230 (320)
187 PRK14720 transcript cleavage f 95.0 0.6 1.3E-05 57.0 16.3 152 431-596 29-193 (906)
188 COG1729 Uncharacterized protei 94.9 0.18 3.8E-06 53.0 10.2 108 516-637 144-251 (262)
189 KOG2796 Uncharacterized conser 94.6 2.8 6.2E-05 44.0 17.8 170 352-543 130-316 (366)
190 PF13181 TPR_8: Tetratricopept 94.6 0.075 1.6E-06 37.1 4.7 33 433-465 1-33 (34)
191 KOG2047 mRNA splicing factor [ 94.5 13 0.00027 43.7 34.4 522 9-623 141-687 (835)
192 PF13176 TPR_7: Tetratricopept 94.4 0.085 1.8E-06 38.0 4.7 34 515-549 1-34 (36)
193 KOG1070 rRNA processing protei 94.3 2.1 4.6E-05 53.6 18.5 93 352-464 1466-1561(1710)
194 COG2976 Uncharacterized protei 94.3 0.63 1.4E-05 46.7 11.8 96 438-543 94-189 (207)
195 KOG3617 WD40 and TPR repeat-co 94.2 1.6 3.5E-05 51.9 16.7 160 437-625 804-998 (1416)
196 PF04733 Coatomer_E: Coatomer 94.1 0.37 7.9E-06 51.7 10.7 151 435-615 104-256 (290)
197 COG0457 NrfG FOG: TPR repeat [ 94.1 5.2 0.00011 37.3 18.2 166 435-625 97-267 (291)
198 KOG4340 Uncharacterized conser 93.9 1.2 2.7E-05 47.3 13.7 65 512-583 143-207 (459)
199 PF13371 TPR_9: Tetratricopept 93.9 0.15 3.3E-06 41.9 5.9 58 54-118 4-61 (73)
200 COG1729 Uncharacterized protei 93.9 0.58 1.3E-05 49.2 11.3 101 436-543 144-245 (262)
201 KOG2471 TPR repeat-containing 93.6 16 0.00035 41.6 25.5 63 512-579 618-680 (696)
202 PF10602 RPN7: 26S proteasome 93.6 0.64 1.4E-05 46.2 10.7 104 433-543 36-143 (177)
203 PF10300 DUF3808: Protein of u 93.5 17 0.00037 41.7 26.8 235 342-610 94-356 (468)
204 PF13181 TPR_8: Tetratricopept 93.5 0.15 3.3E-06 35.5 4.6 32 554-585 1-32 (34)
205 KOG1070 rRNA processing protei 93.5 1.8 4E-05 54.1 16.1 170 431-621 1456-1627(1710)
206 PF04184 ST7: ST7 protein; In 93.4 1.5 3.3E-05 49.7 14.3 200 337-589 195-420 (539)
207 COG2976 Uncharacterized protei 93.2 7.1 0.00015 39.4 17.1 99 514-623 90-188 (207)
208 COG4785 NlpI Lipoprotein NlpI, 93.2 1.6 3.4E-05 44.7 12.7 178 421-610 85-291 (297)
209 PF13374 TPR_10: Tetratricopep 92.9 0.22 4.8E-06 36.0 4.8 33 513-545 2-34 (42)
210 PF08631 SPO22: Meiosis protei 92.9 4.3 9.3E-05 43.1 16.5 135 18-159 6-150 (278)
211 KOG2047 mRNA splicing factor [ 92.9 24 0.00052 41.6 32.6 117 473-599 350-476 (835)
212 PF08631 SPO22: Meiosis protei 92.9 3 6.5E-05 44.3 15.3 103 513-620 35-147 (278)
213 PF13512 TPR_18: Tetratricopep 92.9 1.9 4.2E-05 41.3 12.1 91 432-528 9-99 (142)
214 KOG4648 Uncharacterized conser 92.7 0.48 1.1E-05 51.1 8.6 89 438-542 102-194 (536)
215 KOG3081 Vesicle coat complex C 92.5 9.5 0.00021 40.3 17.5 155 432-615 107-262 (299)
216 PF13428 TPR_14: Tetratricopep 92.4 0.35 7.6E-06 36.2 5.3 34 434-467 2-35 (44)
217 PF09986 DUF2225: Uncharacteri 92.3 1.6 3.5E-05 44.7 11.8 93 528-620 92-191 (214)
218 KOG4507 Uncharacterized conser 92.3 0.33 7.2E-06 55.4 7.2 90 15-118 617-708 (886)
219 COG4700 Uncharacterized protei 92.3 8.3 0.00018 38.8 15.9 146 473-647 92-241 (251)
220 KOG4642 Chaperone-dependent E3 92.0 0.46 1E-05 49.1 7.2 90 440-545 17-110 (284)
221 KOG1586 Protein required for f 91.7 14 0.0003 38.4 17.3 164 446-621 47-222 (288)
222 COG4105 ComL DNA uptake lipopr 91.5 20 0.00044 37.6 20.6 176 431-616 32-226 (254)
223 PF03704 BTAD: Bacterial trans 91.5 6.2 0.00013 37.1 14.2 101 518-625 11-127 (146)
224 KOG3081 Vesicle coat complex C 91.3 11 0.00024 39.9 16.4 157 344-544 108-272 (299)
225 KOG2376 Signal recognition par 90.9 38 0.00081 39.6 35.2 121 513-636 376-503 (652)
226 KOG3785 Uncharacterized conser 90.7 10 0.00023 41.4 15.9 158 431-621 55-212 (557)
227 PF10602 RPN7: 26S proteasome 90.4 3.9 8.4E-05 40.6 11.9 101 514-618 37-137 (177)
228 KOG2581 26S proteasome regulat 90.4 34 0.00074 38.2 24.5 304 342-665 69-405 (493)
229 PF10579 Rapsyn_N: Rapsyn N-te 90.0 1.9 4E-05 37.1 7.9 74 513-590 6-79 (80)
230 KOG4234 TPR repeat-containing 90.0 2.4 5.2E-05 42.9 9.8 97 433-542 95-197 (271)
231 KOG1585 Protein required for f 89.8 28 0.00062 36.5 18.5 118 515-639 73-190 (308)
232 PF11207 DUF2989: Protein of u 89.3 1.6 3.4E-05 44.2 8.2 116 21-149 61-197 (203)
233 smart00028 TPR Tetratricopepti 89.1 0.63 1.4E-05 30.0 3.7 31 434-464 2-32 (34)
234 PF13428 TPR_14: Tetratricopep 88.5 0.87 1.9E-05 34.1 4.4 32 87-118 2-33 (44)
235 PF11817 Foie-gras_1: Foie gra 88.1 5.4 0.00012 41.6 11.7 86 529-615 154-239 (247)
236 PF10300 DUF3808: Protein of u 88.1 4.5 9.8E-05 46.4 12.0 108 428-544 262-378 (468)
237 PF03704 BTAD: Bacterial trans 88.1 13 0.00029 34.8 13.4 110 86-202 6-127 (146)
238 PF13431 TPR_17: Tetratricopep 87.6 0.76 1.6E-05 32.7 3.4 21 513-533 13-33 (34)
239 KOG1839 Uncharacterized protei 85.9 10 0.00023 47.6 13.8 200 433-638 932-1144(1236)
240 KOG4234 TPR repeat-containing 85.8 16 0.00034 37.2 12.6 109 512-631 94-202 (271)
241 KOG2471 TPR repeat-containing 85.3 4 8.6E-05 46.2 9.0 135 514-650 241-394 (696)
242 smart00028 TPR Tetratricopepti 84.9 1.2 2.7E-05 28.6 3.3 29 514-542 2-30 (34)
243 COG0457 NrfG FOG: TPR repeat [ 84.7 33 0.00072 31.7 18.6 174 433-626 59-234 (291)
244 KOG0551 Hsp90 co-chaperone CNS 84.5 4.3 9.3E-05 44.0 8.5 96 435-543 83-183 (390)
245 PF13512 TPR_18: Tetratricopep 83.8 15 0.00033 35.2 11.2 89 513-608 10-98 (142)
246 KOG4642 Chaperone-dependent E3 83.6 4.3 9.2E-05 42.2 7.7 89 61-166 26-114 (284)
247 PF07721 TPR_4: Tetratricopept 83.1 1.5 3.3E-05 29.1 3.0 25 433-457 1-25 (26)
248 PF10516 SHNi-TPR: SHNi-TPR; 82.9 2.3 5E-05 31.4 4.1 35 554-588 1-35 (38)
249 PF13174 TPR_6: Tetratricopept 82.2 2.6 5.7E-05 28.6 4.1 31 435-465 2-32 (33)
250 KOG4648 Uncharacterized conser 82.1 3.4 7.4E-05 44.8 6.7 115 520-648 104-221 (536)
251 KOG3617 WD40 and TPR repeat-co 81.2 1.4E+02 0.0031 36.5 29.9 180 427-625 961-1176(1416)
252 COG4649 Uncharacterized protei 80.9 51 0.0011 33.0 13.7 99 435-541 96-195 (221)
253 COG0790 FOG: TPR repeat, SEL1 80.2 53 0.0012 34.5 15.2 118 431-568 107-236 (292)
254 KOG3785 Uncharacterized conser 79.8 1E+02 0.0022 34.0 37.2 157 13-188 30-202 (557)
255 PF07721 TPR_4: Tetratricopept 79.7 2.1 4.5E-05 28.5 2.7 25 514-538 2-26 (26)
256 PF13174 TPR_6: Tetratricopept 79.7 2.9 6.4E-05 28.4 3.6 28 515-542 2-29 (33)
257 COG5159 RPN6 26S proteasome re 79.2 50 0.0011 35.4 13.9 195 443-639 13-250 (421)
258 KOG0545 Aryl-hydrocarbon recep 78.9 15 0.00032 38.5 9.7 98 435-542 180-293 (329)
259 PF10952 DUF2753: Protein of u 78.6 21 0.00045 33.5 9.6 71 557-627 4-83 (140)
260 COG4785 NlpI Lipoprotein NlpI, 78.3 6.7 0.00015 40.3 7.0 95 431-537 63-157 (297)
261 PF06552 TOM20_plant: Plant sp 78.1 14 0.0003 36.9 9.0 62 512-594 68-133 (186)
262 KOG1839 Uncharacterized protei 78.0 31 0.00066 43.7 13.8 156 424-586 964-1131(1236)
263 KOG1463 26S proteasome regulat 77.7 30 0.00064 37.9 11.9 118 519-638 134-252 (411)
264 KOG2610 Uncharacterized conser 77.6 48 0.001 36.3 13.4 87 520-620 182-273 (491)
265 KOG1497 COP9 signalosome, subu 77.5 85 0.0018 34.2 15.1 101 127-243 100-210 (399)
266 PF02259 FAT: FAT domain; Int 76.1 51 0.0011 35.3 13.9 113 3-118 144-290 (352)
267 PF14853 Fis1_TPR_C: Fis1 C-te 75.5 8.5 0.00018 30.5 5.5 35 515-552 3-37 (53)
268 KOG1463 26S proteasome regulat 75.3 40 0.00086 37.0 12.1 171 10-193 92-271 (411)
269 KOG4814 Uncharacterized conser 75.2 1.9E+02 0.004 34.5 34.8 94 452-547 733-843 (872)
270 KOG4340 Uncharacterized conser 74.7 15 0.00032 39.5 8.6 106 431-539 142-267 (459)
271 PF10952 DUF2753: Protein of u 74.3 12 0.00027 34.9 7.0 53 436-488 4-68 (140)
272 PF11817 Foie-gras_1: Foie gra 73.4 1.2E+02 0.0026 31.5 17.4 63 513-576 178-240 (247)
273 PF10579 Rapsyn_N: Rapsyn N-te 73.3 18 0.0004 31.2 7.3 74 530-628 4-77 (80)
274 PF08626 TRAPPC9-Trs120: Trans 73.0 93 0.002 40.1 16.9 168 20-194 360-569 (1185)
275 COG3118 Thioredoxin domain-con 73.0 38 0.00083 36.4 11.3 101 516-623 137-265 (304)
276 PF10516 SHNi-TPR: SHNi-TPR; 73.0 6.4 0.00014 29.0 3.9 30 434-463 2-31 (38)
277 KOG3783 Uncharacterized conser 72.1 1.4E+02 0.0031 34.6 16.1 78 547-624 442-521 (546)
278 PF13431 TPR_17: Tetratricopep 71.7 3.9 8.4E-05 29.1 2.5 32 68-106 2-33 (34)
279 PF13281 DUF4071: Domain of un 71.4 1.8E+02 0.0038 32.6 17.9 138 468-623 139-289 (374)
280 KOG3364 Membrane protein invol 69.4 15 0.00033 35.0 6.6 73 471-552 33-107 (149)
281 COG0790 FOG: TPR repeat, SEL1 68.9 1.6E+02 0.0034 30.9 15.6 159 439-624 47-221 (292)
282 KOG2041 WD40 repeat protein [G 66.6 2.9E+02 0.0064 33.3 20.5 131 431-580 794-936 (1189)
283 PF13281 DUF4071: Domain of un 66.2 2.2E+02 0.0049 31.8 20.3 143 432-584 178-335 (374)
284 PF08626 TRAPPC9-Trs120: Trans 66.1 57 0.0012 42.0 13.0 184 431-615 240-467 (1185)
285 KOG2581 26S proteasome regulat 65.4 1.5E+02 0.0032 33.5 13.9 107 514-624 170-277 (493)
286 PF05843 Suf: Suppressor of fo 65.4 35 0.00076 36.2 9.4 93 90-199 5-98 (280)
287 KOG2610 Uncharacterized conser 65.4 28 0.00061 38.0 8.4 119 56-188 186-306 (491)
288 PF04184 ST7: ST7 protein; In 63.6 64 0.0014 37.1 11.2 90 529-622 216-323 (539)
289 KOG1550 Extracellular protein 63.4 1.2E+02 0.0026 35.6 14.1 136 445-605 224-371 (552)
290 KOG1308 Hsp70-interacting prot 63.2 3.6 7.7E-05 44.7 1.3 118 440-581 121-242 (377)
291 KOG3616 Selective LIM binding 62.7 3.5E+02 0.0077 32.8 33.6 62 515-579 997-1059(1636)
292 KOG0551 Hsp90 co-chaperone CNS 61.7 48 0.001 36.3 9.3 68 513-583 81-148 (390)
293 PF05843 Suf: Suppressor of fo 60.1 1.3E+02 0.0028 31.9 12.5 128 13-159 9-136 (280)
294 KOG4507 Uncharacterized conser 59.4 65 0.0014 37.7 10.3 98 431-542 211-312 (886)
295 KOG3783 Uncharacterized conser 58.7 3.5E+02 0.0076 31.6 21.6 252 124-469 265-527 (546)
296 PF04053 Coatomer_WDAD: Coatom 58.4 3.3E+02 0.0072 31.1 17.2 134 434-614 296-435 (443)
297 PF06552 TOM20_plant: Plant sp 57.5 43 0.00093 33.5 7.6 68 513-587 25-106 (186)
298 COG3898 Uncharacterized membra 57.2 3.3E+02 0.0072 30.8 19.0 136 431-584 118-259 (531)
299 PF00244 14-3-3: 14-3-3 protei 57.1 2.4E+02 0.0053 29.2 14.5 61 529-589 142-204 (236)
300 PF07079 DUF1347: Protein of u 56.2 2.9E+02 0.0063 31.7 14.4 187 437-635 10-216 (549)
301 KOG0686 COP9 signalosome, subu 55.8 65 0.0014 36.2 9.3 99 436-539 153-255 (466)
302 PF02259 FAT: FAT domain; Int 54.4 2.9E+02 0.0064 29.3 27.5 116 469-589 145-293 (352)
303 PF04781 DUF627: Protein of un 54.3 1.2E+02 0.0026 27.9 9.4 52 527-585 51-102 (111)
304 PF09613 HrpB1_HrpK: Bacterial 54.1 87 0.0019 30.7 9.0 55 473-539 13-70 (160)
305 PF11207 DUF2989: Protein of u 53.8 1.6E+02 0.0035 30.0 11.1 58 513-574 141-198 (203)
306 COG4976 Predicted methyltransf 53.0 31 0.00067 35.9 5.9 149 523-695 5-153 (287)
307 PF04910 Tcf25: Transcriptiona 52.8 3.6E+02 0.0078 29.9 17.1 157 344-543 40-223 (360)
308 PRK13184 pknD serine/threonine 52.0 1.2E+02 0.0025 38.1 11.7 98 439-543 481-582 (932)
309 KOG4322 Anaphase-promoting com 51.2 2.4E+02 0.0052 32.0 12.7 184 439-638 279-475 (482)
310 KOG1497 COP9 signalosome, subu 49.7 3.9E+02 0.0085 29.4 16.0 122 489-617 84-208 (399)
311 TIGR02561 HrpB1_HrpK type III 46.5 39 0.00085 32.8 5.2 53 475-539 15-70 (153)
312 PF14853 Fis1_TPR_C: Fis1 C-te 45.7 43 0.00094 26.5 4.5 32 436-467 4-35 (53)
313 COG3014 Uncharacterized protei 45.3 78 0.0017 34.8 7.7 91 452-542 40-154 (449)
314 cd09034 BRO1_Alix_like Protein 45.2 4.4E+02 0.0094 28.6 14.4 58 572-629 211-286 (345)
315 KOG3364 Membrane protein invol 44.8 61 0.0013 31.1 6.1 65 6-74 33-100 (149)
316 KOG1538 Uncharacterized conser 42.3 6.6E+02 0.014 30.3 14.8 157 436-628 635-807 (1081)
317 KOG1915 Cell cycle control pro 40.9 6.4E+02 0.014 29.3 33.8 85 56-159 84-170 (677)
318 PF04053 Coatomer_WDAD: Coatom 40.9 1.9E+02 0.0041 33.1 10.5 86 431-541 345-430 (443)
319 KOG2053 Mitochondrial inherita 40.6 4.4E+02 0.0094 32.7 13.6 31 426-456 36-66 (932)
320 PHA02537 M terminase endonucle 40.6 1.3E+02 0.0028 31.3 8.4 54 25-79 151-212 (230)
321 KOG1550 Extracellular protein 40.3 2.9E+02 0.0064 32.4 12.4 120 17-159 261-393 (552)
322 KOG2796 Uncharacterized conser 40.0 1.8E+02 0.0039 31.1 9.1 89 83-181 209-299 (366)
323 PF10255 Paf67: RNA polymerase 40.0 66 0.0014 36.3 6.5 73 471-545 123-196 (404)
324 KOG0545 Aryl-hydrocarbon recep 38.5 2.9E+02 0.0063 29.3 10.3 97 357-465 191-296 (329)
325 COG4649 Uncharacterized protei 38.4 4.3E+02 0.0094 26.7 14.1 130 440-581 65-194 (221)
326 PF04190 DUF410: Protein of un 38.1 3.1E+02 0.0067 28.9 11.0 89 532-623 69-170 (260)
327 TIGR03504 FimV_Cterm FimV C-te 37.6 90 0.0019 23.8 5.0 39 559-601 4-42 (44)
328 COG5600 Transcription-associat 37.5 98 0.0021 34.4 7.1 92 469-563 175-271 (413)
329 TIGR03504 FimV_Cterm FimV C-te 37.4 1E+02 0.0023 23.4 5.3 39 517-560 3-41 (44)
330 KOG4322 Anaphase-promoting com 37.3 6.8E+02 0.015 28.6 19.2 107 514-621 274-380 (482)
331 PF09613 HrpB1_HrpK: Bacterial 36.7 4.2E+02 0.0091 26.0 10.9 95 514-625 11-105 (160)
332 KOG1464 COP9 signalosome, subu 35.0 6.1E+02 0.013 27.3 14.5 143 463-608 138-286 (440)
333 PF04190 DUF410: Protein of un 33.3 5.9E+02 0.013 26.7 12.8 107 516-624 13-120 (260)
334 KOG2114 Vacuolar assembly/sort 32.7 1.1E+03 0.023 29.4 16.8 33 431-463 366-398 (933)
335 KOG2561 Adaptor protein NUB1, 32.6 2.8E+02 0.0061 31.6 9.7 31 515-545 269-299 (568)
336 COG3118 Thioredoxin domain-con 32.4 6.8E+02 0.015 27.2 18.1 151 438-611 139-289 (304)
337 KOG0376 Serine-threonine phosp 32.3 63 0.0014 36.9 4.8 85 58-159 17-101 (476)
338 KOG4014 Uncharacterized conser 32.2 5.2E+02 0.011 26.3 10.5 52 445-501 85-140 (248)
339 PRK03947 prefoldin subunit alp 31.9 1.1E+02 0.0024 28.8 5.9 81 281-382 29-114 (140)
340 KOG2908 26S proteasome regulat 31.0 5E+02 0.011 28.7 11.0 99 525-624 87-187 (380)
341 KOG3824 Huntingtin interacting 30.8 70 0.0015 34.7 4.6 70 40-117 112-181 (472)
342 PHA02537 M terminase endonucle 30.7 6.4E+02 0.014 26.3 12.1 104 445-554 95-218 (230)
343 KOG0376 Serine-threonine phosp 30.3 51 0.0011 37.6 3.7 89 442-543 13-102 (476)
344 KOG2053 Mitochondrial inherita 30.0 1.2E+03 0.025 29.2 22.7 134 431-579 75-215 (932)
345 KOG4014 Uncharacterized conser 29.4 6.2E+02 0.014 25.8 12.4 172 433-627 34-233 (248)
346 KOG1464 COP9 signalosome, subu 28.4 7.2E+02 0.016 26.8 11.4 131 446-584 40-175 (440)
347 PF15015 NYD-SP12_N: Spermatog 28.4 4.8E+02 0.01 29.8 10.5 25 440-464 183-207 (569)
348 PF14561 TPR_20: Tetratricopep 28.2 94 0.002 27.2 4.3 39 427-465 16-54 (90)
349 PF07720 TPR_3: Tetratricopept 27.5 1E+02 0.0023 22.3 3.7 23 515-537 3-25 (36)
350 PF14561 TPR_20: Tetratricopep 27.2 4.2E+02 0.0092 23.1 8.5 61 513-578 22-82 (90)
351 COG5159 RPN6 26S proteasome re 26.5 4.1E+02 0.0088 28.8 9.2 78 513-590 165-242 (421)
352 PF02064 MAS20: MAS20 protein 26.5 1E+02 0.0023 28.7 4.5 30 438-467 68-97 (121)
353 TIGR01716 RGG_Cterm transcript 26.2 6.5E+02 0.014 25.0 10.8 81 469-553 127-207 (220)
354 PF07720 TPR_3: Tetratricopept 25.8 1.6E+02 0.0035 21.3 4.5 29 436-464 4-34 (36)
355 KOG3677 RNA polymerase I-assoc 25.2 1.1E+03 0.023 27.1 17.1 70 468-543 233-302 (525)
356 TIGR02561 HrpB1_HrpK type III 24.5 6.4E+02 0.014 24.6 9.5 35 429-463 40-74 (153)
357 COG5091 SGT1 Suppressor of G2 24.3 2.5E+02 0.0053 30.0 7.1 87 523-610 49-135 (368)
358 PRK13184 pknD serine/threonine 23.8 1.6E+02 0.0035 36.9 6.7 96 489-589 491-587 (932)
359 KOG3824 Huntingtin interacting 22.3 1.7E+02 0.0037 31.9 5.6 55 522-583 125-179 (472)
360 PRK10941 hypothetical protein; 22.2 4.6E+02 0.0099 27.9 9.0 73 546-624 173-245 (269)
361 cd09239 BRO1_HD-PTP_like Prote 21.7 1.1E+03 0.024 26.0 12.6 217 433-679 114-357 (361)
362 PF12854 PPR_1: PPR repeat 21.2 1.9E+02 0.004 20.3 4.0 26 513-538 7-32 (34)
363 PF03097 BRO1: BRO1-like domai 21.1 7.2E+02 0.016 27.3 10.7 120 511-630 105-275 (377)
364 PF04212 MIT: MIT (microtubule 21.0 2.3E+02 0.0049 23.1 5.1 33 512-544 4-36 (69)
365 KOG2041 WD40 repeat protein [G 20.5 1.6E+03 0.035 27.5 13.3 81 440-539 741-822 (1189)
366 COG3629 DnrI DNA-binding trans 20.3 3.2E+02 0.007 29.3 7.3 146 2-159 44-216 (280)
No 1
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.9e-109 Score=878.74 Aligned_cols=601 Identities=40% Similarity=0.637 Sum_probs=539.1
Q ss_pred hhHHHHHHHhHHHhhhc--ccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCC
Q 005266 2 EAVAEGLWGLADYHENK--GEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIP 79 (705)
Q Consensus 2 ~~~~~~L~~lAe~~~~~--~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~ 79 (705)
|+||++||||||+|||+ |+|++|||||+|+|+|++ |-++|||||||+|.+||.||+|++.|+.||||||.++++||
T Consensus 4 dAva~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~i--s~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip 81 (629)
T KOG2300|consen 4 DAVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQI--SFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIP 81 (629)
T ss_pred hHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccc
Confidence 59999999999999999 599999999999999999 88999999999999999999999999999999999999999
Q ss_pred chhhhhhhHHHHHHHHHHHcC-CChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005266 80 SCFELKCRTFSLLSQCYHLVG-AIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYV 158 (705)
Q Consensus 80 ~~~dlK~~~~~lLA~~y~~~~-~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~ 158 (705)
+|+|+||.++++||++|++.+ +.+++|+.++|||+++.+ .++|+|+|+||||++|.+++||.+|++.|..|+.
T Consensus 82 ~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~------~p~wsckllfQLaql~~idkD~~sA~elLavga~ 155 (629)
T KOG2300|consen 82 SFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS------VPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAE 155 (629)
T ss_pred cHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC------CchhhHHHHHHHHHHHhhhccchhHHHHHhcccc
Confidence 999999999999999999999 779999999999999997 7899999999999999999999999999999999
Q ss_pred HHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHH-HHhhhhhhhhh
Q 005266 159 CATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFY-RLRICDYKNAA 237 (705)
Q Consensus 159 ~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~-~L~vc~~~~~~ 237 (705)
.|...+.++.+++|.++.+++++|+| +..+|++++++|+++|+ +|++-+.++|+||||| +|++|.|+..|
T Consensus 156 sAd~~~~~ylr~~ftls~~~ll~me~-d~~dV~~ll~~~~qi~~--------n~~sdk~~~E~LkvFyl~lql~yy~~~g 226 (629)
T KOG2300|consen 156 SADHICFPYLRMLFTLSMLMLLIMER-DDYDVEKLLQRCGQIWQ--------NISSDKTQKEMLKVFYLVLQLSYYLLPG 226 (629)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHh--------ccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999996 78899999999999997 6666778899999999 89999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCc
Q 005266 238 HHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNA 317 (705)
Q Consensus 238 ~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~ 317 (705)
+ |+.+++|+ +|||+.|+++.++++-
T Consensus 227 q-~rt~k~~l-----------------------------------------kQLQ~siqtist~~~~------------- 251 (629)
T KOG2300|consen 227 Q-VRTVKPAL-----------------------------------------KQLQDSIQTISTSSRG------------- 251 (629)
T ss_pred c-hhhhHHHH-----------------------------------------HHHHHHHhccCCCCCC-------------
Confidence 8 66666665 5888999995555433
Q ss_pred ccccccccccCC-CCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhH
Q 005266 318 RQAWGDKLVLAP-SPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSA 396 (705)
Q Consensus 318 ~~~~~~~~~~~~-~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~ 396 (705)
.+++ .+|. ++..|.||||+++|||||+++++++|++|+|+||.||.+|++.. ++++...|.
T Consensus 252 ---h~e~-ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q----~eklkq~d~---------- 313 (629)
T KOG2300|consen 252 ---HDEK-ILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQ----TEKLKQADL---------- 313 (629)
T ss_pred ---cccc-ccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHH----Hhhcccccc----------
Confidence 2334 4554 45669999999999999999999999999999999999999998 444443332
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhh-------------------hHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005266 397 IWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA-------------------CESMIEMLRGQYAHSVGCYSEAAFHYV 457 (705)
Q Consensus 397 ~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~-------------------~~a~~~~llG~~~~~~g~~~eA~~~f~ 457 (705)
+.+++.|++|++||++++|++++++.++|.+. .+|++|+++|.|+++.|++++|+.||.
T Consensus 314 --~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~ 391 (629)
T KOG2300|consen 314 --MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFI 391 (629)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHH
Confidence 33666788999999999999998888877543 579999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 005266 458 EAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLA 537 (705)
Q Consensus 458 ~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~ 537 (705)
.|.+++.+...+++|.+|+|++|++.|+.+.+.+++|.++|..+++-++..+ ++.++|+.|+..+.+++++||+++++
T Consensus 392 ~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l--~a~~~~v~glfaf~qn~lnEaK~~l~ 469 (629)
T KOG2300|consen 392 EATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRL--EASILYVYGLFAFKQNDLNEAKRFLR 469 (629)
T ss_pred HHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHH--HHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999999999999999888999999999976555444444 89999999999999999999999999
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHH
Q 005266 538 KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 617 (705)
Q Consensus 538 eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~ 617 (705)
++|+++|.++ +-|++++.|++||++++..|++.||+++++++++||+|++|+++|+|++..+.++|+++|+-+..++.-
T Consensus 470 e~Lkmanaed-~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e 548 (629)
T KOG2300|consen 470 ETLKMANAED-LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENE 548 (629)
T ss_pred HHHhhcchhh-HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 9999997654 559999999999999999999999999999999999999999999999999999999999965554443
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHhhhccchhccchhhHHHhhhcccccccccCCcccCCCCCCCCcccccccccCC
Q 005266 618 EYRRKKLDELQKRLADAYSSIHHIELISKVKLEVQQFHELDIKRAMANQSMSVNLDIPESIGLSTPLPVQSSSRLIDLDG 697 (705)
Q Consensus 618 ~~~~~~~~~l~~~~~~a~~~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (705)
...+ +.+.++...|..+++|.++....++.++++.+-+. ...+|+|+.|||||| +||.+|.|+|||+|+|.+|+
T Consensus 549 ~~~~---~ql~Sr~lla~~~i~~~~~~~pa~~ll~wfdgdPp--v~s~p~~~~~l~~pe-t~l~~~~p~~~ss~~~~~~~ 622 (629)
T KOG2300|consen 549 AFRK---HQLQSRLLLADGSIHHIELVAPAHILLYWFDGDPP--VASAPSMQGNLDIPE-TSLEGPSPAPSSSRLVGLDT 622 (629)
T ss_pred HHHH---HHHHHHHHHhccCcchHhhcccHHhhhhhccCCCc--cccCCccCCccCCCc-ccccCCCCCccccccccCcc
Confidence 3333 66777777888888888888788888777755443 457899999999999 99999999999999999999
Q ss_pred -CCcccc
Q 005266 698 -GRRGKR 703 (705)
Q Consensus 698 -~~~~~~ 703 (705)
+|||||
T Consensus 623 g~~~~~~ 629 (629)
T KOG2300|consen 623 GKRWGKR 629 (629)
T ss_pred cccccCC
Confidence 788886
No 2
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=100.00 E-value=1.9e-57 Score=527.55 Aligned_cols=544 Identities=22% Similarity=0.288 Sum_probs=441.9
Q ss_pred HHHHHHHhHHHhhhcc------------------cHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHH
Q 005266 4 VAEGLWGLADYHENKG------------------EIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAK 65 (705)
Q Consensus 4 ~~~~L~~lAe~~~~~~------------------~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~ 65 (705)
.+..|++|||+|++.. -|++||+||+++++ +.+++|++||++|||||+||++||+|+++|+
T Consensus 2 ~~~~ll~lAeey~~~A~~~~~~~~~~~~l~~Y~kLI~~ai~CL~~~~~-~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae 80 (608)
T PF10345_consen 2 YVDLLLSLAEEYLEKAHSLATKVKSEEQLKQYYKLIATAIKCLEAVLK-QFKLSPRQEARVRLRLASILLEETENLDLAE 80 (608)
T ss_pred hHHHHHHHHHHHHHHhHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5778999999988872 47899999999996 4447999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCC
Q 005266 66 SHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGD 145 (705)
Q Consensus 66 thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d 145 (705)
+||+|++.+.+. ++++|+||.++++|+++|++.|+.. |++.++++|+... +++++.|.|.|+|.++.++...+|
T Consensus 81 ~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~----~~~~~~w~~~frll~~~l~~~~~d 154 (608)
T PF10345_consen 81 TYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE----TYGHSAWYYAFRLLKIQLALQHKD 154 (608)
T ss_pred HHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh----ccCchhHHHHHHHHHHHHHHhccc
Confidence 999999999988 8999999999999999999999888 8888888888665 688899999999998998877799
Q ss_pred HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHH
Q 005266 146 YQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIF 225 (705)
Q Consensus 146 ~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~ 225 (705)
+..|+++|+.|..+|+++|++++.+++.++++++|+++ ..++++.+.+++|+..+..+ .|.+.. +.+.|++|
T Consensus 155 ~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~-~~~~d~~~~l~~~~~~~~~~------q~~~~~-~~~qL~~~ 226 (608)
T PF10345_consen 155 YNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRR-GSPDDVLELLQRAIAQARSL------QLDPSV-HIPQLKAL 226 (608)
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHhhc------ccCCCC-CcHHHHHH
Confidence 99999999999999999999999999999999999987 66888999999998888644 233444 66999999
Q ss_pred H-HHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCC-CC
Q 005266 226 Y-RLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDS-SL 303 (705)
Q Consensus 226 ~-~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~-~~ 303 (705)
+ +|++|.++..|+ ++.+ +++++++|+.+++.... .|
T Consensus 227 ~lll~l~~~l~~~~-~~~~-----------------------------------------~~~L~~lq~~~~~~~~~~~w 264 (608)
T PF10345_consen 227 FLLLDLCCSLQQGD-VKNS-----------------------------------------KQKLKQLQQFLDEIKKSPSW 264 (608)
T ss_pred HHHHHHHHHHHcCC-HHHH-----------------------------------------HHHHHHHHHHHHHhhcCccC
Confidence 9 899999999887 3333 33446667777772111 12
Q ss_pred C-----ccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q 005266 304 T-----GKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDAL 378 (705)
Q Consensus 304 ~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l 378 (705)
. +.+|+... ..+.+ ..+. ++.|.|||+.++++|+|++|+++++++|..+||+||+++|++++++.+
T Consensus 265 ~~~~~d~~i~l~~~-----~~~~~---~~~~-~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 265 PSWDEDGSIPLNIG-----EGSSN---SGGT-PLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred CCcCCCeeEEeecc-----ccccc---CCCc-eeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 1 11221000 00000 0011 568999999999999999999999999999999999999999988866
Q ss_pred HhcCCCCCccccch---hhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhh------------------hHHHHHH
Q 005266 379 LKLGITDGVREVDL---QHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA------------------CESMIEM 437 (705)
Q Consensus 379 ~~~~~~~~~~e~~l---~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~------------------~~a~~~~ 437 (705)
.+ .+..+..++ ..+..|...+ +..+++..+.+.+++++|..+.+. ..+.++|
T Consensus 336 ~~---~~~~~~~sl~~~~~~~~~~~~l----~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~y 408 (608)
T PF10345_consen 336 IK---SPSAPSESLSEASERIQWLRYL----QCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHY 408 (608)
T ss_pred cc---CCCCCCcCHHHHHHhHHHHHHH----HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHH
Confidence 11 122222332 3356674433 555667889999999999766443 2499999
Q ss_pred HHHHHHHHcCCHHHHHHHHH--------HHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCc
Q 005266 438 LRGQYAHSVGCYSEAAFHYV--------EAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~--------~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~ 505 (705)
+.|.+++++|+++.|+.+|. .+.+....+....++.+|+.+++...+..+. +...++.++|.+..+.+
T Consensus 409 L~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~ 488 (608)
T PF10345_consen 409 LLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPN 488 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCcc
Confidence 99999999999999999998 4455566688899999999999998766444 89999999998776655
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LAr 585 (705)
.... .+..++..+.-.+..-..++++++++++|+.+++..+|.++++.+++.||..++ .|+.++..++..+++++|+
T Consensus 489 ~~~~--~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~ 565 (608)
T PF10345_consen 489 SYNR--TAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAK 565 (608)
T ss_pred HHHH--HHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH
Confidence 4433 355666666666677778899999999999993369999999999999999999 7899998888888999999
Q ss_pred HcCChhhHHH---HHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 586 KLYDIPTQIW---ALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 586 k~gD~~~q~~---al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
++.|...++| +...+.+.+...|+.++|.+....+.+.
T Consensus 566 k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 566 KSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 9988888899 6778888999999999999987766554
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.77 E-value=5.1e-15 Score=175.99 Aligned_cols=497 Identities=15% Similarity=0.082 Sum_probs=268.6
Q ss_pred HHhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhH
Q 005266 9 WGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRT 88 (705)
Q Consensus 9 ~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~ 88 (705)
..++.-+...+++..|+.+++.+++..+ ...+ +...+|.++ ...+++++|...|+++..+.+..+ ..
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~--~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~-------~~ 399 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDP---DDPA--ALSLLGEAY-LALGDFEKAAEYLAKATELDPENA-------AA 399 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHH--HHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCCH-------HH
Confidence 3455555556666666666666664333 1111 223334433 335666666666666655443333 34
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHhhcccccc---------------------------ccccchhhHhHHHHHHHHHh
Q 005266 89 FSLLSQCYHLVGAIPPQKLILYKALDLTSSASQ---------------------------DVAVKLWSCNFNSQLANAFI 141 (705)
Q Consensus 89 ~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~---------------------------~~~~~~W~~~f~~~lA~~~~ 141 (705)
++.++.+|...|....+...+.++++..+.... ..|.+.. .+..+|.++.
T Consensus 400 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~ 476 (899)
T TIGR02917 400 RTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNAS---LHNLLGAIYL 476 (899)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcH---HHHHHHHHHH
Confidence 445555666666555555555555554431000 0112222 3344566667
Q ss_pred hcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhH
Q 005266 142 IEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNEL 221 (705)
Q Consensus 142 ~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~ 221 (705)
..|++..|++.|++.... ++....+.+.++.++... .+++++...+.++-..- |. .
T Consensus 477 ~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~----~~-------------~ 532 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSI----EPDFFPAAANLARIDIQE---GNPDDAIQRFEKVLTID----PK-------------N 532 (899)
T ss_pred hCCCHHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhC----cC-------------c
Confidence 777777777777766554 455555666666655444 55555555544442221 10 0
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHH-H-HHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhcc
Q 005266 222 LHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEI-Q-QLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLE 299 (705)
Q Consensus 222 l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~-q-~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~ 299 (705)
..++..+-.+ |...|+ .+.++... .++-.. + .....+.....+...++. .+++..+++.++. .
T Consensus 533 ~~~~~~l~~~-~~~~~~----~~~A~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~~-~ 597 (899)
T TIGR02917 533 LRAILALAGL-YLRTGN----EEEAVAWL-EKAAELNPQEIEPALALAQYYLGKGQL--------KKALAILNEAADA-A 597 (899)
T ss_pred HHHHHHHHHH-HHHcCC----HHHHHHHH-HHHHHhCccchhHHHHHHHHHHHCCCH--------HHHHHHHHHHHHc-C
Confidence 0111100000 111111 22222100 110000 0 000001111123334433 4555555555554 3
Q ss_pred CCCCCccccccccccCCcccccccccccCCCCcccccccch----hhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 005266 300 DSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKS----AVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQ 375 (705)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~----~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~ 375 (705)
|.+......++..+...+..+. +..++.+. ...+.++...+.++...|++++|.+++++++..
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~-----------A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 664 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNK-----------AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL-- 664 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHH-----------HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 3332222233333333322211 22222221 134566777788888889999999888888774
Q ss_pred HHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 005266 376 DALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFH 455 (705)
Q Consensus 376 ~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~ 455 (705)
.|.- ...|.....+ ... .+...-.....+......+..+.+...+|.++...|++++|...
T Consensus 665 --------~~~~-------~~~~~~l~~~--~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 665 --------KPDN-------TEAQIGLAQL--LLA--AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred --------CCCC-------HHHHHHHHHH--HHH--cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 1110 1222111100 000 00000001111122223345677888999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHH
Q 005266 456 YVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQE 531 (705)
Q Consensus 456 f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~e 531 (705)
|.+++...++. ....+++.++...|++++ +.++++ ..|++ ..+++.+|.++...|++++
T Consensus 726 ~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~------~~~~~-------~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 726 YRKALKRAPSS----QNAIKLHRALLASGNTAEAVKTLEAWLK------THPND-------AVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHHhhCCCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCCCC-------HHHHHHHHHHHHHCcCHHH
Confidence 99999987765 346678888888898766 334333 23442 4578889999999999999
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCch
Q 005266 532 ARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRG 611 (705)
Q Consensus 532 A~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~ 611 (705)
|...++++++.. -.+ ..++..+|+++...|+ .+|.+++++++.+. ++. ......+|.++...|+++
T Consensus 789 A~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 789 AIKHYRTVVKKA---PDN----AVVLNNLAWLYLELKD-PRALEYAEKALKLA---PNI---PAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHHHHHHhC---CCC----HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC---CCC---cHHHHHHHHHHHHcCCHH
Confidence 999999998774 222 3477888999999999 77999999998763 232 233457888999999999
Q ss_pred HHHHHHHHHHHH
Q 005266 612 NEMENDEYRRKK 623 (705)
Q Consensus 612 ~A~e~~~~~~~~ 623 (705)
+|.+.++...+.
T Consensus 855 ~A~~~~~~a~~~ 866 (899)
T TIGR02917 855 RALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHHhh
Confidence 999988877764
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.76 E-value=1.4e-14 Score=172.18 Aligned_cols=171 Identities=16% Similarity=0.138 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
..+..+..+|.++...|++++|..+|.++++..++.. .+..+++.++...|++++ +.++++. .|++.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~ 533 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFF---PAAANLARIDIQEGNPDDAIQRFEKVLTI------DPKNL 533 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCcH
Confidence 4566777788888888888888888888877765432 245566666666666554 3333321 12210
Q ss_pred ch------------hhh---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Q 005266 507 NG------------VRE---------------EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTI 559 (705)
Q Consensus 507 ~g------------~~~---------------qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~ 559 (705)
.. ... ....++.+|..+...|++++|...++++++.. ..+ ..++..
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~~~~~ 606 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA---PDS----PEAWLM 606 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCC----HHHHHH
Confidence 00 000 01234445555555556666665555554332 111 235667
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 560 LGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 560 LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
+|.++...|++++|.+.++.++.+- ++ ...+...++.++...|++++|.+.++...+.
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~---~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ---PD---SALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7777777777777777777776542 11 2344556777777777777777777666544
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.73 E-value=4.9e-14 Score=175.92 Aligned_cols=440 Identities=16% Similarity=0.068 Sum_probs=269.1
Q ss_pred HHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchh----
Q 005266 53 LLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLW---- 128 (705)
Q Consensus 53 iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W---- 128 (705)
..+...+++++|+..|++++.+.+..+ .+++.|+.+|.+.|+...|...++++++..+.... ...|
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~-------~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~---~~~~~~ll 346 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDS-------EALGALGQAYSQQGDRARAVAQFEKALALDPHSSN---RDKWESLL 346 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc---hhHHHHHH
Confidence 445568999999999999999888776 88999999999999999999999999998874211 1123
Q ss_pred ---hHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcC
Q 005266 129 ---SCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESID 205 (705)
Q Consensus 129 ---~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~ 205 (705)
.|...+.++.++...|++..|+..|++..+. .+....+++.++.++... .+++++++.+.++.++-
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~----~P~~~~a~~~Lg~~~~~~---g~~~eA~~~y~~aL~~~---- 415 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQV----DNTDSYAVLGLGDVAMAR---KDYAAAERYYQQALRMD---- 415 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhC----
Confidence 2235556788999999999999999998876 666778888899888777 88888888887776542
Q ss_pred cccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHH-HHHh--hhhHHhhhhcCCCCCChhhhh
Q 005266 206 PNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEI-QQLS--SELDALNQSLSRPDLPSRERS 282 (705)
Q Consensus 206 ~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~-q~l~--~~l~~l~~~L~~~~~~~~~~~ 282 (705)
|+....+ ..+-.+| +-..+-.+-..++++.+.-. .++... ..+. .....-..++.+++.
T Consensus 416 p~~~~a~-------~~L~~l~--~~~~~~~A~~~l~~l~~~~~---~~~~~~~~~l~~~~~~~~a~~~~~~g~~------ 477 (1157)
T PRK11447 416 PGNTNAV-------RGLANLY--RQQSPEKALAFIASLSASQR---RSIDDIERSLQNDRLAQQAEALENQGKW------ 477 (1157)
T ss_pred CCCHHHH-------HHHHHHH--HhcCHHHHHHHHHhCCHHHH---HHHHHHHHHhhhhHHHHHHHHHHHCCCH------
Confidence 2211100 0111111 11111111111111100000 000000 0000 000000012222222
Q ss_pred HHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHH
Q 005266 283 ALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKE 362 (705)
Q Consensus 283 ~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~k 362 (705)
+++++.+++-++. .| ..+-+++-.+.++...|++++
T Consensus 478 --~eA~~~~~~Al~~-~P-----------------------------------------~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 478 --AQAAELQRQRLAL-DP-----------------------------------------GSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred --HHHHHHHHHHHHh-CC-----------------------------------------CCHHHHHHHHHHHHHcCCHHH
Confidence 3333444433333 00 112345667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHH-HHHh----hhhhhhHHhhhh----hHH
Q 005266 363 CMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENK-VAVE----LTRSGFVEAQEA----CES 433 (705)
Q Consensus 363 a~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~-~~~~----L~~~~~~~a~~~----~~a 433 (705)
|.+.++++++. .|.-+ ..+.+...+ ... .... .+.. +...+|...... ...
T Consensus 514 A~~~l~~al~~----------~P~~~-------~~~~a~al~--l~~-~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 514 ADALMRRLAQQ----------KPNDP-------EQVYAYGLY--LSG-SDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred HHHHHHHHHHc----------CCCCH-------HHHHHHHHH--HHh-CCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 99999998874 22211 111111000 000 0000 0000 001111111100 111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchh
Q 005266 434 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 434 ~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~ 509 (705)
.....++..+...|++++|...+. ..++. .....++|.++...|++++ +.++++ ..|++
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~---~~~~~~La~~~~~~g~~~~A~~~y~~al~------~~P~~---- 636 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLR----QQPPS---TRIDLTLADWAQQRGDYAAARAAYQRVLT------REPGN---- 636 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHH----hCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCC----
Confidence 223456778888999999998876 22321 1245778889988899766 555555 23442
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
..+++.+|.++...|++++|...++++++.. . .+ ..++..+|.++...|++++|.+.+++++....+...
T Consensus 637 ---~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p--~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 637 ---ADARLGLIEVDIAQGDLAAARAQLAKLPATA-N--DS----LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C--CC----hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 4578899999999999999999999887653 1 12 135677899999999999999999999887766554
Q ss_pred hhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 590 IPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 590 ~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
......++..+++++...|++++|.+.|..++.
T Consensus 707 ~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 707 SMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 434456667789999999999999999988864
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.70 E-value=6.7e-13 Score=155.44 Aligned_cols=439 Identities=13% Similarity=0.109 Sum_probs=260.9
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhcccccccc
Q 005266 44 VKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDV 123 (705)
Q Consensus 44 A~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~ 123 (705)
|.+....|..+| ..++++.|...|++++.+.+. + ..++-++.||.++|++..+.....+++++.+
T Consensus 127 a~~~k~~G~~~~-~~~~~~~Ai~~y~~al~~~p~-~-------~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p------ 191 (615)
T TIGR00990 127 AAKLKEKGNKAY-RNKDFNKAIKLYSKAIECKPD-P-------VYYSNRAACHNALGDWEKVVEDTTAALELDP------ 191 (615)
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCc-h-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------
Confidence 455556666655 479999999999999887654 3 4688899999999999999999999999887
Q ss_pred ccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhh
Q 005266 124 AVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWES 203 (705)
Q Consensus 124 ~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~ 203 (705)
.+.+ -++.+|.+|...|+|..|+..|.....+- +.........+-..+. ..+.+.+...++.
T Consensus 192 -~~~~---a~~~~a~a~~~lg~~~eA~~~~~~~~~~~---~~~~~~~~~~~~~~l~-----------~~a~~~~~~~l~~ 253 (615)
T TIGR00990 192 -DYSK---ALNRRANAYDGLGKYADALLDLTASCIID---GFRNEQSAQAVERLLK-----------KFAESKAKEILET 253 (615)
T ss_pred -CCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCccHHHHHHHHHHHH-----------HHHHHHHHHHHhc
Confidence 4444 55668999999999999999887654331 1111111111111110 0112222222221
Q ss_pred cCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCC-------
Q 005266 204 IDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDL------- 276 (705)
Q Consensus 204 ~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~------- 276 (705)
-+... ..+. .+..++ +... . ......++... ++. ..+....+
T Consensus 254 ~~~~~-~~~~-------~~~~~~--~~~~--~-~~~~~~~~~~~-----------~~~-------~~~~~~~~~l~~~~~ 302 (615)
T TIGR00990 254 KPENL-PSVT-------FVGNYL--QSFR--P-KPRPAGLEDSN-----------ELD-------EETGNGQLQLGLKSP 302 (615)
T ss_pred CCCCC-CCHH-------HHHHHH--HHcc--C-Ccchhhhhccc-----------ccc-------cccccchHHHHHHHH
Confidence 11110 0000 000010 0000 0 00000000000 000 00000000
Q ss_pred ChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcC
Q 005266 277 PSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRP 356 (705)
Q Consensus 277 ~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~ 356 (705)
..+.....+++++..++.++. - .+ ....+.++...+.++..
T Consensus 303 e~~~~~~y~~A~~~~~~al~~-----~-------------------------------~~---~~~~a~a~~~lg~~~~~ 343 (615)
T TIGR00990 303 ESKADESYEEAARAFEKALDL-----G-------------------------------KL---GEKEAIALNLRGTFKCL 343 (615)
T ss_pred HhhhhhhHHHHHHHHHHHHhc-----C-------------------------------CC---ChhhHHHHHHHHHHHHH
Confidence 000000011222222222222 0 00 11356778888999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHH
Q 005266 357 KGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIE 436 (705)
Q Consensus 357 ~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~ 436 (705)
.|++++|.+++++++.. .|.. ...|.....+++.. ..... .+...+-.....+..+.++
T Consensus 344 ~g~~~eA~~~~~kal~l----------~P~~-------~~~~~~la~~~~~~---g~~~e-A~~~~~~al~~~p~~~~~~ 402 (615)
T TIGR00990 344 KGKHLEALADLSKSIEL----------DPRV-------TQSYIKRASMNLEL---GDPDK-AEEDFDKALKLNSEDPDIY 402 (615)
T ss_pred cCCHHHHHHHHHHHHHc----------CCCc-------HHHHHHHHHHHHHC---CCHHH-HHHHHHHHHHhCCCCHHHH
Confidence 99999999999999884 2221 12221111111110 00000 0111111222345668899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhH
Q 005266 437 MLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREE 512 (705)
Q Consensus 437 ~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~q 512 (705)
+.+|.++...|++++|..+|++|+++.++.. .+..++|.++...|++++ +.+++. .+|.+
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~------~~P~~------- 466 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI---FSHIQLGVTQYKEGSIASSMATFRRCKK------NFPEA------- 466 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCccCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCCCC-------
Confidence 9999999999999999999999999987643 347788999999999877 555555 33442
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHH-HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV-SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~-a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
+.+++.+|.++..+|++++|...+++|+.+. ......... ...+...+-.+...|++++|.+.+++|+.+- +
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~---p--- 539 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELE-KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID---P--- 539 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---C---
Confidence 5689999999999999999999999999985 222221111 1122223334445799999999999999762 2
Q ss_pred hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Q 005266 592 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQK 629 (705)
Q Consensus 592 ~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~ 629 (705)
....+...||+++...|++++|.+.++.+.+...+...
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 23456788999999999999999999999888775443
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.65 E-value=6.8e-12 Score=156.86 Aligned_cols=460 Identities=13% Similarity=0.047 Sum_probs=281.0
Q ss_pred HHHhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhh
Q 005266 8 LWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCR 87 (705)
Q Consensus 8 L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~ 87 (705)
.+.+|.-+...++...|+++++.+++..+ ++..- .+-|-..+....++.++|...|+++....++.+ .
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p--~~~~l---a~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~-------~ 182 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAP--PELDL---AVEYWRLVAKLPAQRPEAINQLQRLNADYPGNT-------G 182 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCC--CChHH---HHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCH-------H
Confidence 46677788888999999999999997655 33221 223444445566899999999999888877777 7
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHhhccccc---c------------------------ccccchhhH--h-------
Q 005266 88 TFSLLSQCYHLVGAIPPQKLILYKALDLTSSAS---Q------------------------DVAVKLWSC--N------- 131 (705)
Q Consensus 88 ~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~---~------------------------~~~~~~W~~--~------- 131 (705)
++..||++|...|+.+.|...++++++...... . .++...-.. .
T Consensus 183 ~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~ 262 (1157)
T PRK11447 183 LRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQ 262 (1157)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 888999999999999999988988765432100 0 000000000 0
Q ss_pred -------H-HHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhh
Q 005266 132 -------F-NSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWES 203 (705)
Q Consensus 132 -------f-~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~ 203 (705)
+ ...++.++...|++..|+..|++..+. ++...++.+.|+.++... .++++++..+.++-+.-
T Consensus 263 ~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~----~P~~~~a~~~Lg~~~~~~---g~~~eA~~~l~~Al~~~-- 333 (1157)
T PRK11447 263 KQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA----NPKDSEALGALGQAYSQQ---GDRARAVAQFEKALALD-- 333 (1157)
T ss_pred HhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhC--
Confidence 0 013467788889999999999998876 677788899999888777 78888888777764432
Q ss_pred cCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhH
Q 005266 204 IDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSA 283 (705)
Q Consensus 204 ~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~ 283 (705)
|+... .......+... .| |..+..-..++.+++.
T Consensus 334 --p~~~~----~~~~~~ll~~~------~~---------------------------~~~~~~g~~~~~~g~~------- 367 (1157)
T PRK11447 334 --PHSSN----RDKWESLLKVN------RY---------------------------WLLIQQGDAALKANNL------- 367 (1157)
T ss_pred --CCccc----hhHHHHHHHhh------hH---------------------------HHHHHHHHHHHHCCCH-------
Confidence 21100 00000111000 00 0000000012233333
Q ss_pred HHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHH
Q 005266 284 LAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKEC 363 (705)
Q Consensus 284 l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka 363 (705)
+++.+.+++.++. +|. .+.+++..+.++...|++++|
T Consensus 368 -~eA~~~~~~Al~~-~P~-----------------------------------------~~~a~~~Lg~~~~~~g~~~eA 404 (1157)
T PRK11447 368 -AQAERLYQQARQV-DNT-----------------------------------------DSYAVLGLGDVAMARKDYAAA 404 (1157)
T ss_pred -HHHHHHHHHHHHh-CCC-----------------------------------------CHHHHHHHHHHHHHCCCHHHH
Confidence 4555556665655 111 123445556777777888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHH-----------------------------HHHHhHH
Q 005266 364 MQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLL-----------------------------MQFLENK 414 (705)
Q Consensus 364 ~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~-----------------------------~~~Le~~ 414 (705)
+++++++++. .|.-. ..|.....++.. ...+...
T Consensus 405 ~~~y~~aL~~----------~p~~~-------~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~ 467 (1157)
T PRK11447 405 ERYYQQALRM----------DPGNT-------NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQ 467 (1157)
T ss_pred HHHHHHHHHh----------CCCCH-------HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHH
Confidence 8888887764 11100 001000000000 0000000
Q ss_pred HHHhhhhhhhHHhh---------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHH-------
Q 005266 415 VAVELTRSGFVEAQ---------EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAV------- 478 (705)
Q Consensus 415 ~~~~L~~~~~~~a~---------~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlal------- 478 (705)
..+.+...++.+|. .|..+.+++.+|.++...|++++|...|++++++.++... +..+.++
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~---~~~a~al~l~~~~~ 544 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE---QVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHhCCC
Confidence 01111123333332 3355778888888888899999999888888877654321 1122222
Q ss_pred -------------------------------------HHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHH
Q 005266 479 -------------------------------------SYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGL 521 (705)
Q Consensus 479 -------------------------------------v~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~ 521 (705)
.+...|++++.... ++ ..|++ +..++.+|.
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~---l~---~~p~~-------~~~~~~La~ 611 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL---LR---QQPPS-------TRIDLTLAD 611 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH---HH---hCCCC-------chHHHHHHH
Confidence 22233333222222 22 12332 346788999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 005266 522 LLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLT 601 (705)
Q Consensus 522 ~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~ 601 (705)
++...|++++|+..++++++.. -.| ..++..+|.++...|++++|.++++.++... +|. ..+...++
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~---P~~----~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~---p~~---~~~~~~la 678 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTRE---PGN----ADARLGLIEVDIAQGDLAAARAQLAKLPATA---NDS---LNTQRRVA 678 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHhccC---CCC---hHHHHHHH
Confidence 9999999999999999999883 234 2578899999999999999999999776542 222 34556788
Q ss_pred HHHHHcCCchHHHHHHHHHHHH
Q 005266 602 ALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 602 ~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
.++...|++++|.+.++.....
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhh
Confidence 9999999999999999887765
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.61 E-value=1.3e-13 Score=152.38 Aligned_cols=426 Identities=14% Similarity=0.115 Sum_probs=274.7
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccc
Q 005266 47 RLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVK 126 (705)
Q Consensus 47 rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~ 126 (705)
||.+|.=+|+ .+|+..|+.|-.-.+.-.+... .-.-+|+-+|++......-.+...-++...++-.|.|
T Consensus 51 ~l~lah~~yq-~gd~~~a~~h~nmv~~~d~t~~-------~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~y--- 119 (966)
T KOG4626|consen 51 RLELAHRLYQ-GGDYKQAEKHCNMVGQEDPTNT-------ERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAY--- 119 (966)
T ss_pred HHHHHHHHHh-ccCHHHHHHHHhHhhccCCCcc-------cceeeehhhhhcccchhhhhhhhhhhhhccchHHHHH---
Confidence 7778877775 6889999999775544333332 4445677777777665444333333444444322222
Q ss_pred hhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCc
Q 005266 127 LWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDP 206 (705)
Q Consensus 127 ~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~ 206 (705)
.-+|+++...|+++.|+.+|+.++.+ .++.++....++.+++.- .+.+.+-+....+-+ +.|
T Consensus 120 -------sn~aN~~kerg~~~~al~~y~~aiel----~p~fida~inla~al~~~---~~~~~a~~~~~~alq----lnP 181 (966)
T KOG4626|consen 120 -------SNLANILKERGQLQDALALYRAAIEL----KPKFIDAYINLAAALVTQ---GDLELAVQCFFEALQ----LNP 181 (966)
T ss_pred -------HHHHHHHHHhchHHHHHHHHHHHHhc----CchhhHHHhhHHHHHHhc---CCCcccHHHHHHHHh----cCc
Confidence 23688889999999999999998887 888999999999988655 444444433322222 223
Q ss_pred cccc--ccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHH
Q 005266 207 NRRG--QCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSAL 284 (705)
Q Consensus 207 ~~~~--~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l 284 (705)
+... +.-|.. .++-| ++.+...|-
T Consensus 182 ~l~ca~s~lgnL----------------lka~G-rl~ea~~cY------------------------------------- 207 (966)
T KOG4626|consen 182 DLYCARSDLGNL----------------LKAEG-RLEEAKACY------------------------------------- 207 (966)
T ss_pred chhhhhcchhHH----------------HHhhc-ccchhHHHH-------------------------------------
Confidence 2111 111110 01111 122222221
Q ss_pred HHHHHHHHHHHHhccCC-CCCccccccccccCCcccccccccccCCCCcccccccchh----hHHHHHHHHHHHhcCCCC
Q 005266 285 AGRQAKLQQRLRSLEDS-SLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSA----VYALVDLMVVILGRPKGL 359 (705)
Q Consensus 285 ~~~~~~lq~~i~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~----~~aL~yll~~~~~~~~g~ 359 (705)
++-|.. +|. -+-|+ .|+-++.. .|+. -+++.-+.+.. .|+-+|+=.+.++...+.
T Consensus 208 -------lkAi~~-qp~fAiaws-nLg~~f~~-----~Gei------~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 208 -------LKAIET-QPCFAIAWS-NLGCVFNA-----QGEI------WLAIQHYEEAVKLDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred -------HHHHhh-CCceeeeeh-hcchHHhh-----cchH------HHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhc
Confidence 122333 221 00110 01111100 0000 00111111111 467788888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHH
Q 005266 360 FKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLR 439 (705)
Q Consensus 360 ~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~ll 439 (705)
|++|...+.+|+.. .|+...+... + +.+|. ..-+|+.-+-+ -+-..+.+|.=+.+...+
T Consensus 268 ~d~Avs~Y~rAl~l----------rpn~A~a~gN---l--a~iYy--eqG~ldlAI~~----Ykral~~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL----------RPNHAVAHGN---L--ACIYY--EQGLLDLAIDT----YKRALELQPNFPDAYNNL 326 (966)
T ss_pred chHHHHHHHHHHhc----------CCcchhhccc---e--EEEEe--ccccHHHHHHH----HHHHHhcCCCchHHHhHH
Confidence 99999999999875 2221111100 0 01110 00001111111 122233455567788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHH
Q 005266 440 GQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASL 515 (705)
Q Consensus 440 G~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~a 515 (705)
|..+...|+.+||+.+|.+|+++.++ -+-+..|+|.+|...|..+. +..||+ .+|+ =|++
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~p~---hadam~NLgni~~E~~~~e~A~~ly~~al~------v~p~-------~aaa 390 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLCPN---HADAMNNLGNIYREQGKIEEATRLYLKALE------VFPE-------FAAA 390 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhccchHHHHHHHHHHh------hChh-------hhhh
Confidence 99999999999999999999999765 24568999999999998776 788888 3444 3789
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHH
Q 005266 516 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIW 595 (705)
Q Consensus 516 l~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~ 595 (705)
+.++|.++.++|++++|..++.+|+++. ..-|++|+.||..|-.+|+...|..+|.+|... .+.-+.
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~YkealrI~-------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~------nPt~Ae 457 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMCYKEALRIK-------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI------NPTFAE 457 (966)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHhcC-------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc------CcHHHH
Confidence 9999999999999999999999999994 467899999999999999999999999999865 677889
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 596 ALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 596 al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
+..+|+-+|+..|+..+|...|+.++++.-
T Consensus 458 AhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 458 AHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999887654
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.59 E-value=9.1e-12 Score=146.87 Aligned_cols=152 Identities=14% Similarity=0.085 Sum_probs=100.1
Q ss_pred HHHHHHHHcCCHHH----HHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchh
Q 005266 438 LRGQYAHSVGCYSE----AAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 438 llG~~~~~~g~~~e----A~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~ 509 (705)
.+|..+...|++++ |+.+|++|+++.++. ..+..++|.++...|++++ +.++++ ..|++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~eA~~~l~~al~------l~P~~---- 317 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN---VRIVTLYADALIRTGQNEKAIPLLQQSLA------THPDL---- 317 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCCCC----
Confidence 56777777788775 678888888776653 2456677777777777666 455554 22332
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
+.+++.+|.++...|++++|...+++++... . .+ ..++..+|.++...|++++|.+.|++++...-+...
T Consensus 318 ---~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P--~~----~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 318 ---PYVRAMYARALRQVGQYTAASDEFVQLAREK-G--VT----SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c--cc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 4467777888888888888888887776652 1 11 124555677788888888888888888777555443
Q ss_pred hhhHHHHHHHHHHHHHHcCCchHH
Q 005266 590 IPTQIWALSVLTALYQQLGDRGNE 613 (705)
Q Consensus 590 ~~~q~~al~~L~~l~~~~Gd~~~A 613 (705)
.... -+...+.+.+...+.+++.
T Consensus 388 ~~~~-ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 388 QSFE-EGLLALDGQISAVNLPPER 410 (656)
T ss_pred hhHH-HHHHHHHHHHHhcCCccch
Confidence 3322 3556667777777666544
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.53 E-value=4.6e-11 Score=145.31 Aligned_cols=115 Identities=11% Similarity=-0.005 Sum_probs=97.6
Q ss_pred CChHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhc
Q 005266 38 FLPIIEVKTRLRISTLLLKHT-HNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (705)
Q Consensus 38 ~~p~~EA~~rLrla~iL~e~T-~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~ 116 (705)
++|..-=..-..+..-++... +|+++|+..|++|+.+.|..+ .+++.||++|.+.|+++.|..+++|+++++
T Consensus 36 ~~~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~-------~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld 108 (987)
T PRK09782 36 LSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNI-------PLTLYLAEAYRHFGHDDRARLLLEDQLKRH 108 (987)
T ss_pred CchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 456544445555555555555 999999999999999999998 888999999999999999999999999999
Q ss_pred cccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 005266 117 SSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAIL 177 (705)
Q Consensus 117 ~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~ 177 (705)
+ .+.| |...+|.+ +++.+|+..++++++. .+.+.++++.++..
T Consensus 109 P-------~n~~---~~~~La~i----~~~~kA~~~ye~l~~~----~P~n~~~~~~la~~ 151 (987)
T PRK09782 109 P-------GDAR---LERSLAAI----PVEVKSVTTVEELLAQ----QKACDAVPTLRCRS 151 (987)
T ss_pred c-------ccHH---HHHHHHHh----ccChhHHHHHHHHHHh----CCCChhHHHHHHHH
Confidence 8 7888 66666777 9999999999999987 88889999999887
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.53 E-value=6.7e-11 Score=138.62 Aligned_cols=402 Identities=14% Similarity=0.078 Sum_probs=238.4
Q ss_pred hHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCc
Q 005266 87 RTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYP 166 (705)
Q Consensus 87 ~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~ 166 (705)
..+..++..|++.|++..|.....++|+..+ ++ .+++.+|.+|...|+|..|++.+++...+ ++.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-------~~----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l----~p~ 192 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-------DP----VYYSNRAACHNALGDWEKVVEDTTAALEL----DPD 192 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------ch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHc----CCC
Confidence 3455678899999999999999999999876 21 25677899999999999999999998876 888
Q ss_pred hHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHH
Q 005266 167 DLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAA 246 (705)
Q Consensus 167 ~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~ 246 (705)
...+++.++.++..+ .+++++...++.+... + +. .++..... +.++
T Consensus 193 ~~~a~~~~a~a~~~l---g~~~eA~~~~~~~~~~-~-----------~~--~~~~~~~~--------------~~~~--- 238 (615)
T TIGR00990 193 YSKALNRRANAYDGL---GKYADALLDLTASCII-D-----------GF--RNEQSAQA--------------VERL--- 238 (615)
T ss_pred CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHh-C-----------CC--ccHHHHHH--------------HHHH---
Confidence 999999999999888 7788777666544221 1 00 00110000 0000
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccc
Q 005266 247 MKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLV 326 (705)
Q Consensus 247 l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 326 (705)
+. + .........++. .|.+......++. +++..+......
T Consensus 239 l~----~--------------------------------~a~~~~~~~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~~-- 278 (615)
T TIGR00990 239 LK----K--------------------------------FAESKAKEILET-KPENLPSVTFVGN-YLQSFRPKPRPA-- 278 (615)
T ss_pred HH----H--------------------------------HHHHHHHHHHhc-CCCCCCCHHHHHH-HHHHccCCcchh--
Confidence 00 0 000001111111 1111000000000 000000000000
Q ss_pred cCCCCcccccccchhhHHHHHH-HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHH
Q 005266 327 LAPSPMDGEWLPKSAVYALVDL-MVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLM 405 (705)
Q Consensus 327 ~~~~~l~~~WLpk~~~~aL~yl-l~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~ 405 (705)
+- ..-..+......++..+ .........+.+++|.+++++++.. .. ..+. ....|.....++
T Consensus 279 -~~--~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~-----~~--~~~~-------~a~a~~~lg~~~ 341 (615)
T TIGR00990 279 -GL--EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDL-----GK--LGEK-------EAIALNLRGTFK 341 (615)
T ss_pred -hh--hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc-----CC--CChh-------hHHHHHHHHHHH
Confidence 00 00000001000111111 1112225557778888888888763 10 0011 011221111111
Q ss_pred HHHHHHhHHHHHhhhhhhhHHh--hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhh
Q 005266 406 LLMQFLENKVAVELTRSGFVEA--QEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 483 (705)
Q Consensus 406 l~~~~Le~~~~~~L~~~~~~~a--~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~ 483 (705)
..+ +..--. ...+..+ .+|..+..+..+|.++...|++++|...|.+++++.++. ..+..++|.++...
T Consensus 342 ~~~----g~~~eA--~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 342 CLK----GKHLEA--LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED---PDIYYHRAQLHFIK 412 (615)
T ss_pred HHc----CCHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc
Confidence 010 000000 1112222 234557788899999999999999999999999987664 24678889999999
Q ss_pred CChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Q 005266 484 GDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTI 559 (705)
Q Consensus 484 gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~ 559 (705)
|++++ +.+++++ .|++ ..+++.+|.++...|++++|...++++++.. . .+ ..++..
T Consensus 413 g~~~~A~~~~~kal~l------~P~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P--~~----~~~~~~ 472 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDL------DPDF-------IFSHIQLGVTQYKEGSIASSMATFRRCKKNF-P--EA----PDVYNY 472 (615)
T ss_pred CCHHHHHHHHHHHHHc------CccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C--CC----hHHHHH
Confidence 99877 6666662 3442 4578899999999999999999999999874 2 22 347888
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHH-HHHHHHHcCCchHHHHHHHHHHHH
Q 005266 560 LGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSV-LTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 560 LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~-L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
+|.++...|++++|.+.|+.|+.+..+....+...+.+.. ...++...|++++|.+.++.+...
T Consensus 473 lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 473 YGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999999999999999998765544333332222 233455579999999988876544
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.51 E-value=8.8e-11 Score=138.59 Aligned_cols=338 Identities=12% Similarity=-0.025 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccc
Q 005266 45 KTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVA 124 (705)
Q Consensus 45 ~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~ 124 (705)
-..+|+--+-+...+++..|.+.++..+...+..+ .+++.|+.+....|+...|...++++++..+.
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-------~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~------ 108 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-------DLLRRWVISPLASSQPDAVLQVVNKLLAVNVC------ 108 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-------hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC------
Confidence 45667777777888899999999998877777777 78888899999999999999999999998873
Q ss_pred cchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhc
Q 005266 125 VKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESI 204 (705)
Q Consensus 125 ~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~ 204 (705)
+.. .++.+|.++...|++..|+..|++...+ .+....+...++.++..+ .+++++..
T Consensus 109 -~~~---a~~~la~~l~~~g~~~~Ai~~l~~Al~l----~P~~~~a~~~la~~l~~~---g~~~eA~~------------ 165 (656)
T PRK15174 109 -QPE---DVLLVASVLLKSKQYATVADLAEQAWLA----FSGNSQIFALHLRTLVLM---DKELQAIS------------ 165 (656)
T ss_pred -ChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHC---CChHHHHH------------
Confidence 332 4567889999999999999999987776 566666666666655333 22222211
Q ss_pred CcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHH
Q 005266 205 DPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSAL 284 (705)
Q Consensus 205 ~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l 284 (705)
T Consensus 166 -------------------------------------------------------------------------------- 165 (656)
T PRK15174 166 -------------------------------------------------------------------------------- 165 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHH
Q 005266 285 AGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECM 364 (705)
Q Consensus 285 ~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~ 364 (705)
..++.+.. .|.+. . ++.. ...+...|++++|.
T Consensus 166 -----~~~~~~~~-~P~~~-----------------------------~------------a~~~-~~~l~~~g~~~eA~ 197 (656)
T PRK15174 166 -----LARTQAQE-VPPRG-----------------------------D------------MIAT-CLSFLNKSRLPEDH 197 (656)
T ss_pred -----HHHHHHHh-CCCCH-----------------------------H------------HHHH-HHHHHHcCCHHHHH
Confidence 11111222 10000 0 0000 11245678889998
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHH
Q 005266 365 QRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAH 444 (705)
Q Consensus 365 k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~ 444 (705)
..++..+.. .+. . ...+ ...+|..+.
T Consensus 198 ~~~~~~l~~----------~~~----~---~~~~-------------------------------------~~~l~~~l~ 223 (656)
T PRK15174 198 DLARALLPF----------FAL----E---RQES-------------------------------------AGLAVDTLC 223 (656)
T ss_pred HHHHHHHhc----------CCC----c---chhH-------------------------------------HHHHHHHHH
Confidence 877776553 110 0 0001 013466777
Q ss_pred HcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh-HHHHHHhhcccc-ccCCccchhhhHHHHHHHHHHH
Q 005266 445 SVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVY-QMKDTINGVREEASLHFAYGLL 522 (705)
Q Consensus 445 ~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~-~~~ALeli~~~~-~~~~~~~g~~~qA~al~~lG~~ 522 (705)
..|++++|+..|.+++.+.++. ..+..++|.++...|++++ ..+|++.++.+. ..|++ +.+++.+|.+
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-------~~a~~~lg~~ 293 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-------VRIVTLYADA 293 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-------HHHHHHHHHH
Confidence 8999999999999999987663 4567889999999999764 223444333321 23442 5689999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 005266 523 LMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 602 (705)
Q Consensus 523 ~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~ 602 (705)
+..+|++++|...+++++++. -.++ .++..+|.++...|++++|.+.++.++.. .++. ......++.
T Consensus 294 l~~~g~~~eA~~~l~~al~l~---P~~~----~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~---~~~~~~~a~ 360 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATH---PDLP----YVRAMYARALRQVGQYTAASDEFVQLARE---KGVT---SKWNRYAAA 360 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Cccc---hHHHHHHHH
Confidence 999999999999999999874 2232 46677999999999999999999988765 2332 223444688
Q ss_pred HHHHcCCchHHHHHHHHHHHH
Q 005266 603 LYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 603 l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
++...|++++|.+.+..+.+.
T Consensus 361 al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 899999999999999987666
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.8e-10 Score=133.73 Aligned_cols=173 Identities=16% Similarity=0.123 Sum_probs=128.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh-----hCChh-h---HHHHHHhhccccc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC-----IGDAE-S---SSQAIDLIGPVYQ 501 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~-----~gd~d-~---~~~ALeli~~~~~ 501 (705)
..+.+..++|.+++....+.-|..-|...++..... .-+.+.+.+|.+|+. ..++. + ..+|+.+++.+-+
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~-~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK-TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC-CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 347777888888888888888888777766442221 123345555556665 22221 1 8999999887655
Q ss_pred c-CCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 005266 502 M-KDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSS 580 (705)
Q Consensus 502 ~-~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~A 580 (705)
+ |.+ ..+=+.+|.++-..|++.+|+..|.+.-... .+.- .++..+|++|...|++..|.++|+.+
T Consensus 641 ~dpkN-------~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~------dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 641 NDPKN-------MYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFE------DVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred cCcch-------hhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCC------ceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 4 443 3456778999999999999999999885554 2222 37889999999999999999999999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 581 LTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 581 l~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
+....+..+ ..++.-|++++-..|+..+|.++...+..
T Consensus 707 lkkf~~~~~----~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 707 LKKFYKKNR----SEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHhcccCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 988887777 56677899999999999998887766554
No 14
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.46 E-value=2.5e-11 Score=136.90 Aligned_cols=274 Identities=16% Similarity=0.133 Sum_probs=199.8
Q ss_pred ccccchh---hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHH
Q 005266 335 EWLPKSA---VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFL 411 (705)
Q Consensus 335 ~WLpk~~---~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~L 411 (705)
+|+.... +.++.+ .++.|..+|.|++|+.-.+.+++.+.+. .| .....+..-.-|.+.+|..+ =
T Consensus 189 ~~~~~~~P~~~~~~~~--La~~y~~~g~~e~A~~l~k~Al~~l~k~---~G----~~hl~va~~l~~~a~~y~~~----~ 255 (508)
T KOG1840|consen 189 KGLGDEDPERLRTLRN--LAEMYAVQGRLEKAEPLCKQALRILEKT---SG----LKHLVVASMLNILALVYRSL----G 255 (508)
T ss_pred HhcccCCchHHHHHHH--HHHHHHHhccHHHHHHHHHHHHHHHHHc---cC----ccCHHHHHHHHHHHHHHHHh----c
Confidence 4555555 455555 8899999999999999999999984431 11 01111111122322322210 0
Q ss_pred hHHHHHh-----hh-hhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----h-hHHHHHHHHHHHHH
Q 005266 412 ENKVAVE-----LT-RSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES----K-SMQAMCHAYAAVSY 480 (705)
Q Consensus 412 e~~~~~~-----L~-~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~----~-~g~a~a~~nlalv~ 480 (705)
+..-++. |+ +.+.--..++..+.++..||..+..+|+|+||..++++|+++... . .--+..+.|++.++
T Consensus 256 k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~ 335 (508)
T KOG1840|consen 256 KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAIL 335 (508)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 1111111 11 111111233356888999999999999999999999999998644 2 23456677889998
Q ss_pred HhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-CHHHHHH
Q 005266 481 FCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG-NLQLVSQ 555 (705)
Q Consensus 481 l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g-n~~l~a~ 555 (705)
-..+++++ +.++++++.. .+..+.+.+ +..+.++|..++..|+|.||.+.+.+|+++.++..| +...++-
T Consensus 336 ~~~~~~Eea~~l~q~al~i~~~--~~g~~~~~~---a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 336 QSMNEYEEAKKLLQKALKIYLD--APGEDNVNL---AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHh--hccccchHH---HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 88888877 7888888773 222222234 778999999999999999999999999999854333 3688899
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh-hhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 556 YLTILGNLALALHDTVQAREILRSSLTLAKKLYDI-PTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 556 aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~-~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
.+..||..|.+++.+++|.+.|..+..+.+..|.- ++...++.+|+.+|+..|+.+.|.+..+...+..+.
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999666544 488999999999999999999999988888877663
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.45 E-value=2e-09 Score=131.27 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhh
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~ 510 (705)
.+..+|..+...|++++|..+|.+++++.++.. ....+++....+.|++++ +.++++ ..|+
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~---~l~~~La~~l~~~Gr~~eAl~~~~~AL~------l~P~------ 608 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN---ALYWWLHAQRYIPGQPELALNDLTRSLN------IAPS------ 608 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH---HHHHHHHHHHHhCCCHHHHHHHHHHHHH------hCCC------
Confidence 355678888888888888888888887755432 112223333334577666 455544 2232
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 590 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~ 590 (705)
+.+++.+|.++...|++++|...+++++.+. -.|. .++..+|.++...|++++|.+++++|+.+. ++
T Consensus 609 --~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~---Pd~~----~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~---P~- 675 (987)
T PRK09782 609 --ANAYVARATIYRQRHNVPAAVSDLRAALELE---PNNS----NYQAALGYALWDSGDIAQSREMLERAHKGL---PD- 675 (987)
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC-
Confidence 3467788888888888888888888887773 2332 467788888888888888888888887652 22
Q ss_pred hhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 591 PTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 591 ~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
-..+...||.++...|++++|.+.++.+.+...
T Consensus 676 --~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 676 --DPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 245566778888888888888887777765543
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.41 E-value=5.6e-09 Score=125.53 Aligned_cols=415 Identities=10% Similarity=-0.058 Sum_probs=258.7
Q ss_pred ccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHH
Q 005266 19 GEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHL 98 (705)
Q Consensus 19 ~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~ 98 (705)
++...++.=++.+....+ . .+.++.-+|.++ ...+++++|..++++++.+.+..+ .+...++.++..
T Consensus 29 g~~~~A~~~~~~~~~~~~--~---~a~~~~~lA~~~-~~~g~~~~A~~~~~~al~~~P~~~-------~a~~~la~~l~~ 95 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQ--L---PARGYAAVAVAY-RNLKQWQNSLTLWQKALSLEPQND-------DYQRGLILTLAD 95 (765)
T ss_pred CCHHHHHHHHHHHHhhCC--C---CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHH
Confidence 456666655555553233 1 233444445444 666999999999999999888877 777899999999
Q ss_pred cCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 005266 99 VGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILH 178 (705)
Q Consensus 99 ~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~ 178 (705)
.|....|...++++++..+ .+.+ ++.+|.++...|++..|+..++++... .+...++.+.++.++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P-------~~~~----~~~la~~l~~~g~~~~Al~~l~~al~~----~P~~~~~~~~la~~l 160 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAP-------DKAN----LLALAYVYKRAGRHWDELRAMTQALPR----APQTQQYPTEYVQAL 160 (765)
T ss_pred CCCHHHHHHHHHHHHHhCC-------CCHH----HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH
Confidence 9999999999999999887 3343 345799999999999999999998887 777888888888766
Q ss_pred HHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 005266 179 VHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQ 258 (705)
Q Consensus 179 ~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q 258 (705)
... ..++.+..+++++... |+ ...++ ..+++.. . .
T Consensus 161 ~~~---~~~e~Al~~l~~~~~~-----p~---~~~~l--------------------------~~~~~~~----~----~ 195 (765)
T PRK10049 161 RNN---RLSAPALGAIDDANLT-----PA---EKRDL--------------------------EADAAAE----L----V 195 (765)
T ss_pred HHC---CChHHHHHHHHhCCCC-----HH---HHHHH--------------------------HHHHHHH----H----H
Confidence 544 5555565555433210 00 00000 0111110 0 0
Q ss_pred HHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccccCCCCccccccc
Q 005266 259 QLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLP 338 (705)
Q Consensus 259 ~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLp 338 (705)
++ ++.............++++++++..+.. .|.+... .|
T Consensus 196 r~---------~~~~~~~~~~r~~~ad~Al~~~~~ll~~-~~~~p~~-------------------------------~~ 234 (765)
T PRK10049 196 RL---------SFMPTRSEKERYAIADRALAQYDALEAL-WHDNPDA-------------------------------TA 234 (765)
T ss_pred Hh---------hcccccChhHHHHHHHHHHHHHHHHHhh-cccCCcc-------------------------------ch
Confidence 11 1111111111111224566677777765 1111110 00
Q ss_pred chhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHh
Q 005266 339 KSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVE 418 (705)
Q Consensus 339 k~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~ 418 (705)
.+..+.+.........|.+++|.+.+++.++. + +..| -+
T Consensus 235 ---~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~--------~--~~~P--------~~-------------------- 273 (765)
T PRK10049 235 ---DYQRARIDRLGALLARDRYKDVISEYQRLKAE--------G--QIIP--------PW-------------------- 273 (765)
T ss_pred ---HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--------C--CCCC--------HH--------------------
Confidence 11122221111123447888888887776552 1 1101 00
Q ss_pred hhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChh-HHHHHHHHHHHHHHhhCChhhHHHHHHhhc
Q 005266 419 LTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-MQAMCHAYAAVSYFCIGDAESSSQAIDLIG 497 (705)
Q Consensus 419 L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~-g~a~a~~nlalv~l~~gd~d~~~~ALeli~ 497 (705)
+...+|.++..+|++++|+.+|++++...+... ........++.++...|++++....++-+.
T Consensus 274 ----------------a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 274 ----------------AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred ----------------HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 011347889999999999999999887654331 112335566666777788776322222211
Q ss_pred cc-----------cccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Q 005266 498 PV-----------YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA 566 (705)
Q Consensus 498 ~~-----------~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~ 566 (705)
.. ...|++. ...+++..|.++...|++++|...+++++... -+|. ..+..+|.++..
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~-----~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~---P~n~----~l~~~lA~l~~~ 405 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDD-----WLQGQSLLSQVAKYSNDLPQAEMRARELAYNA---PGNQ----GLRIDYASVLQA 405 (765)
T ss_pred hcCCceEeecCCCCCCCCch-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHh
Confidence 11 0112210 23467888999999999999999999998874 3453 478899999999
Q ss_pred CCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 567 LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 567 lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
.|++++|++.+++++.+. +|. .-....++.++...|++++|...+....+
T Consensus 406 ~g~~~~A~~~l~~al~l~---Pd~---~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 406 RGWPRAAENELKKAEVLE---PRN---INLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred cCCHHHHHHHHHHHHhhC---CCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999998875 443 33555677789999998888885554443
No 17
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.38 E-value=7.4e-12 Score=133.30 Aligned_cols=260 Identities=17% Similarity=0.136 Sum_probs=195.5
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHH-HHHHHHHHHHHHHhHHHHHhhhhhhhHHhh
Q 005266 350 VVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIW-MAGVYLMLLMQFLENKVAVELTRSGFVEAQ 428 (705)
Q Consensus 350 ~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w-~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~ 428 (705)
.+..|-..++++||.||..--+....-.=.++|...+ ..++ -.++ +-+-| =|-+++|.- .+..|.
T Consensus 61 LGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs--sgNL--GNtlKv~G~f-------deA~~cc~r---hLd~ar 126 (639)
T KOG1130|consen 61 LGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS--SGNL--GNTLKVKGAF-------DEALTCCFR---HLDFAR 126 (639)
T ss_pred hcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc--cccc--cchhhhhccc-------chHHHHHHH---HhHHHH
Confidence 3445555678899999987776642221123332111 2222 1111 11222 144555641 222333
Q ss_pred hh----hHHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhc---CChhHHHHHHHHHHHHHH
Q 005266 429 EA----CESMIEMLRGQYAHSVGCY--------------------SEAAFHYVEAAKIT---ESKSMQAMCHAYAAVSYF 481 (705)
Q Consensus 429 ~~----~~a~~~~llG~~~~~~g~~--------------------~eA~~~f~~Al~l~---~~~~g~a~a~~nlalv~l 481 (705)
+. .++.++|.+|.+|+..|+- +.|..+|..-+++. +++..+..|.-|++..|-
T Consensus 127 eLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyY 206 (639)
T KOG1130|consen 127 ELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYY 206 (639)
T ss_pred HHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceee
Confidence 33 6799999999999998763 24556666655553 346667788999999999
Q ss_pred hhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Q 005266 482 CIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL 557 (705)
Q Consensus 482 ~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL 557 (705)
..||++. ...=|++.++. ||+... -.++-++|.+|...|+++.|.+++..++.++ .++||+..+|+.-
T Consensus 207 lLGdf~~ai~~H~~RL~ia~ef----GDrAae---RRA~sNlgN~hiflg~fe~A~ehYK~tl~LA-ielg~r~vEAQsc 278 (639)
T KOG1130|consen 207 LLGDFDQAIHFHKLRLEIAQEF----GDRAAE---RRAHSNLGNCHIFLGNFELAIEHYKLTLNLA-IELGNRTVEAQSC 278 (639)
T ss_pred eeccHHHHHHHHHHHHHHHHHh----hhHHHH---HHhhcccchhhhhhcccHhHHHHHHHHHHHH-HHhcchhHHHHHH
Confidence 9999988 34456666665 454444 2478899999999999999999999999999 6899999999999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Q 005266 558 TILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRL 631 (705)
Q Consensus 558 ~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~ 631 (705)
+.||..|.-+.+...|..+..+-|++|++++|+.+++.+...||..|.+.|.+.+|+-+.+.+++.+.++.+.-
T Consensus 279 YSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 279 YSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS 352 (639)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877654
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.37 E-value=4.5e-10 Score=124.82 Aligned_cols=373 Identities=17% Similarity=0.157 Sum_probs=274.1
Q ss_pred HHHHHHhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhh
Q 005266 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (705)
Q Consensus 5 ~~~L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dl 84 (705)
++++=-||..++..++..-|+.=+++++..++ --+||- +-+|..|. -.+..+.|.+.+..|+.+.+..-
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p---~fida~--inla~al~-~~~~~~~a~~~~~~alqlnP~l~----- 184 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKP---KFIDAY--INLAAALV-TQGDLELAVQCFFEALQLNPDLY----- 184 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc---hhhHHH--hhHHHHHH-hcCCCcccHHHHHHHHhcCcchh-----
Confidence 55666689999999999999999999997554 235544 44455443 45667889999998888776553
Q ss_pred hhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcC
Q 005266 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (705)
Q Consensus 85 K~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~ 164 (705)
.+.+-+..++.-.|....||.--.|||+..+. + ...| .-|+..+..+|+...|++.+++.+.+ .
T Consensus 185 --ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~----f-Aiaw-----snLg~~f~~~Gei~~aiq~y~eAvkl----d 248 (966)
T KOG4626|consen 185 --CARSDLGNLLKAEGRLEEAKACYLKAIETQPC----F-AIAW-----SNLGCVFNAQGEIWLAIQHYEEAVKL----D 248 (966)
T ss_pred --hhhcchhHHHHhhcccchhHHHHHHHHhhCCc----e-eeee-----hhcchHHhhcchHHHHHHHHHHhhcC----C
Confidence 77777888888899999999888899998763 1 2455 35788899999999999999998887 8
Q ss_pred CchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Q 005266 165 YPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLD 244 (705)
Q Consensus 165 ~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~ 244 (705)
++....+..|...+-.+ .-+|.+..++.++-.+ .|.-... |... .|-|.+.|+ +|
T Consensus 249 P~f~dAYiNLGnV~ke~---~~~d~Avs~Y~rAl~l----rpn~A~a------~gNl--------a~iYyeqG~----ld 303 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEA---RIFDRAVSCYLRALNL----RPNHAVA------HGNL--------ACIYYEQGL----LD 303 (966)
T ss_pred CcchHHHhhHHHHHHHH---hcchHHHHHHHHHHhc----CCcchhh------ccce--------EEEEecccc----HH
Confidence 88999999999999888 4577777777666433 1211111 1111 344555555 22
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccc
Q 005266 245 AAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDK 324 (705)
Q Consensus 245 ~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 324 (705)
-+|. --++-|.- + |
T Consensus 304 lAI~-----------------------------------------~Ykral~~------~---P---------------- 317 (966)
T KOG4626|consen 304 LAID-----------------------------------------TYKRALEL------Q---P---------------- 317 (966)
T ss_pred HHHH-----------------------------------------HHHHHHhc------C---C----------------
Confidence 2221 11122222 1 0
Q ss_pred cccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHH
Q 005266 325 LVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYL 404 (705)
Q Consensus 325 ~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~ 404 (705)
.|.-+|-=.+.....+|+.++|+.++.++|+.+
T Consensus 318 -----------------~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~------------------------------ 350 (966)
T KOG4626|consen 318 -----------------NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC------------------------------ 350 (966)
T ss_pred -----------------CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC------------------------------
Confidence 123344445667778899999999999998851
Q ss_pred HHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhC
Q 005266 405 MLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 484 (705)
Q Consensus 405 ~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~g 484 (705)
+..|.+.+.||.++.-+|.+++|...|+.|+..+++ -+.+..|+|.+|-.+|
T Consensus 351 -------------------------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~---~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 351 -------------------------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE---FAAAHNNLASIYKQQG 402 (966)
T ss_pred -------------------------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh---hhhhhhhHHHHHHhcc
Confidence 123444568899999999999999999999998664 4567899999999988
Q ss_pred Chhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 005266 485 DAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 560 (705)
Q Consensus 485 d~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~L 560 (705)
.+++ +..|+. |.|. =|.+|.++|..+-..|+-++|...+.+|+++ | .--|.+...|
T Consensus 403 nl~~Ai~~Ykealr-I~P~------------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~------n-Pt~AeAhsNL 462 (966)
T KOG4626|consen 403 NLDDAIMCYKEALR-IKPT------------FADALSNMGNTYKEMGDVSAAIQCYTRAIQI------N-PTFAEAHSNL 462 (966)
T ss_pred cHHHHHHHHHHHHh-cCch------------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhc------C-cHHHHHHhhH
Confidence 8776 667766 4442 2679999999999999999999999999777 2 4567899999
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHcCCh
Q 005266 561 GNLALALHDTVQAREILRSSLTLAKKLYDI 590 (705)
Q Consensus 561 G~i~~~lg~~~qA~~~~~~Al~LArk~gD~ 590 (705)
|.+|--.|+..+|..+|+.||.+--..+|-
T Consensus 463 asi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 463 ASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred HHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 999999999999999999999886555553
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.33 E-value=4.1e-09 Score=126.71 Aligned_cols=393 Identities=10% Similarity=-0.028 Sum_probs=234.0
Q ss_pred HHHHHHhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhh
Q 005266 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (705)
Q Consensus 5 ~~~L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dl 84 (705)
+.++..+|..++..++...|+.+++.+++..| ...++ ++-+|.+++ ..+++++|..+|+++....+..+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P---~~~~a--~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~----- 117 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP---QNDDY--QRGLILTLA-DAGQYDEALVKAKQLVSGAPDKA----- 117 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHH--HHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCH-----
Confidence 45688899999999999999999999997654 23444 346666654 78999999999999988877766
Q ss_pred hhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcC
Q 005266 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (705)
Q Consensus 85 K~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~ 164 (705)
. ++.|+.+|...|+...|...++++++..+. +.- .++.++.++...++...|++.++.....-....
T Consensus 118 --~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-------~~~---~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~ 184 (765)
T PRK10049 118 --N-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-------TQQ---YPTEYVQALRNNRLSAPALGAIDDANLTPAEKR 184 (765)
T ss_pred --H-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHH---HHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHH
Confidence 5 888999999999999999999999999883 222 334568888888999999998876442100000
Q ss_pred CchHHHHHHHHHHHHHhcc--cCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhh
Q 005266 165 YPDLQMFFATAILHVHLMQ--WDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDN 242 (705)
Q Consensus 165 ~~~~~~~~~La~~~~~L~~--~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~ 242 (705)
.........+......... ...+..+.+++...+.++...+.+... .. ...+..
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~-~~------~~~~a~----------------- 240 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA-TA------DYQRAR----------------- 240 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc-ch------HHHHHH-----------------
Confidence 0001111112221111100 012223344555555444321111100 00 000000
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccc
Q 005266 243 LDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWG 322 (705)
Q Consensus 243 l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (705)
++.+.-.+.+++ ..++++..++.+.. .|. +|
T Consensus 241 ---------------------~d~l~~Ll~~g~--------~~eA~~~~~~ll~~-~~~-----~P-------------- 271 (765)
T PRK10049 241 ---------------------IDRLGALLARDR--------YKDVISEYQRLKAE-GQI-----IP-------------- 271 (765)
T ss_pred ---------------------HHHHHHHHHhhh--------HHHHHHHHHHhhcc-CCC-----CC--------------
Confidence 000000011111 13344445554433 000 00
Q ss_pred cccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHH
Q 005266 323 DKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGV 402 (705)
Q Consensus 323 ~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~ 402 (705)
.++..+ .+..+...|++++|.+.+++++.. .|..+.... ..+
T Consensus 272 -------------------~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~----------~p~~~~~~~---~~~---- 313 (765)
T PRK10049 272 -------------------PWAQRW--VASAYLKLHQPEKAQSILTELFYH----------PETIADLSD---EEL---- 313 (765)
T ss_pred -------------------HHHHHH--HHHHHHhcCCcHHHHHHHHHHhhc----------CCCCCCCCh---HHH----
Confidence 022222 266888899999999999987753 111000000 000
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh-----------h-HHH
Q 005266 403 YLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-----------S-MQA 470 (705)
Q Consensus 403 ~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~-----------~-g~a 470 (705)
..++..+..+|++++|..++.++....+.. . ...
T Consensus 314 ----------------------------------~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 314 ----------------------------------ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred ----------------------------------HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 123344567788888888888877664420 1 223
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCH
Q 005266 471 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 550 (705)
Q Consensus 471 ~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~ 550 (705)
.+....+.++...|++++....++-.-. ..|++ ...++.+|.++...|++++|...+++++.+. -.|.
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n-------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~---Pd~~ 427 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGN-------QGLRIDYASVLQARGWPRAAENELKKAEVLE---PRNI 427 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCh
Confidence 4556777777777887663222222111 34553 4578888889999999999999999988873 2232
Q ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 005266 551 QLVSQYLTILGNLALALHDTVQAREILRSSLT 582 (705)
Q Consensus 551 ~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~ 582 (705)
.++..+|.++..+|+.++|++.++.++.
T Consensus 428 ----~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 428 ----NLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred ----HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2666788888899999999988888865
No 20
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=1.4e-10 Score=130.95 Aligned_cols=193 Identities=19% Similarity=0.189 Sum_probs=165.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-----KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQ 501 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~-----~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~ 501 (705)
.-+.+...+|.++..++++++|...|++|+.+..+ ....+.++.|+|.+|...|++++ +.+|++++..+
T Consensus 239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-- 316 (508)
T KOG1840|consen 239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-- 316 (508)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--
Confidence 34556668999999999999999999999988543 55678899999999999999877 89999988874
Q ss_pred cCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 005266 502 MKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ-LVSQYLTILGNLALALHDTVQAREILRSS 580 (705)
Q Consensus 502 ~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~-l~a~aL~~LG~i~~~lg~~~qA~~~~~~A 580 (705)
++...+. -+..+..+|.++...+++++|+.++++++++.....|-.. .++-....||..|+..|++.+|++++++|
T Consensus 317 -~~~~~~~--v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 317 -LGASHPE--VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred -hccChHH--HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 2223333 3678999999999999999999999999999854344334 78889999999999999999999999999
Q ss_pred HHHHHHcCC--hhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Q 005266 581 LTLAKKLYD--IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 628 (705)
Q Consensus 581 l~LArk~gD--~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~ 628 (705)
+++.+..++ +++....+..|+..|-..+++++|...|..+..+....+
T Consensus 394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 394 IQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred HHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 999999999 677888999999999999999999999999998885433
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.25 E-value=3.2e-08 Score=108.55 Aligned_cols=93 Identities=18% Similarity=0.093 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHH
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHF 517 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~ 517 (705)
.+|.++...|++++|...|.+++...++.. ..++.
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---------------------------------------------~~~~~ 253 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQDPEYL---------------------------------------------SEVLP 253 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHChhhH---------------------------------------------HHHHH
Confidence 568888889999999999988776532211 22455
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 518 AYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 518 ~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
.++.++...|++++|...++++++.. . +. ..+..+|.++...|+.++|.+.++.++..
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~~-p---~~----~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEEY-P---GA----DLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-C---Cc----hHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 66677778888888888888887663 1 21 12367888888888888888888888765
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.23 E-value=1.2e-07 Score=113.68 Aligned_cols=445 Identities=11% Similarity=-0.031 Sum_probs=254.5
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchh
Q 005266 49 RISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLW 128 (705)
Q Consensus 49 rla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W 128 (705)
+..-|+....+|++.|.+.|++++...+..+ .+.+-++.++...|+.+.|..+++|++ .+ .|.|
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~-------~av~dll~l~~~~G~~~~A~~~~eka~--~p-------~n~~ 101 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQS-------GQVDDWLQIAGWAGRDQEVIDVYERYQ--SS-------MNIS 101 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccch-------hhHHHHHHHHHHcCCcHHHHHHHHHhc--cC-------CCCC
Confidence 4556777788999999999999988887764 233378889999999999999999999 33 5576
Q ss_pred hHhHHHHH--HHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCc
Q 005266 129 SCNFNSQL--ANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDP 206 (705)
Q Consensus 129 ~~~f~~~l--A~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~ 206 (705)
++.++ |.++..+|+|..|++.|+++.+. .+.+..+++.++.++... .+++++...++++...-
T Consensus 102 ---~~~llalA~ly~~~gdyd~Aiely~kaL~~----dP~n~~~l~gLa~~y~~~---~q~~eAl~~l~~l~~~d----- 166 (822)
T PRK14574 102 ---SRGLASAARAYRNEKRWDQALALWQSSLKK----DPTNPDLISGMIMTQADA---GRGGVVLKQATELAERD----- 166 (822)
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHhhc---CCHHHHHHHHHHhcccC-----
Confidence 55555 77999999999999999998886 777788888777766555 56665555554443321
Q ss_pred ccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHH
Q 005266 207 NRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAG 286 (705)
Q Consensus 207 ~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~ 286 (705)
+.. .+.+-.-| +..+ .+.- .+
T Consensus 167 -------p~~--~~~l~lay-------L~~~--~~~~-----------------------------------------~~ 187 (822)
T PRK14574 167 -------PTV--QNYMTLSY-------LNRA--TDRN-----------------------------------------YD 187 (822)
T ss_pred -------cch--HHHHHHHH-------HHHh--cchH-----------------------------------------HH
Confidence 111 01110111 1100 0000 11
Q ss_pred HHHHHHHHHHhccCCCCCccccccccccCCcccccccccc-cCCC---CcccccccchhhHHHHHHHHHHHhcCCCChHH
Q 005266 287 RQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLV-LAPS---PMDGEWLPKSAVYALVDLMVVILGRPKGLFKE 362 (705)
Q Consensus 287 ~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~---~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~k 362 (705)
+++.+++.++. +|++.+....+....-.++..+.-.++. ..|. +.+..||.- ...+..+--. ..+..+.++
T Consensus 188 AL~~~ekll~~-~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~---~~~a~~vr~a-~~~~~~~~~ 262 (822)
T PRK14574 188 ALQASSEAVRL-APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLER---DAAAEQVRMA-VLPTRSETE 262 (822)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHH---HHHHHHHhhc-ccccccchh
Confidence 33444444444 3333211000000000000000000000 0010 012233322 1122222111 112222344
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhh---hhhHHHHHHHH
Q 005266 363 CMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ---EACESMIEMLR 439 (705)
Q Consensus 363 a~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~---~~~~a~~~~ll 439 (705)
....++.+|...+..+..-+-.|+ .....+++-..+++. ... +..+.. +..++..-+ ++..+.+....
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~---~~~~~~~~~~Drl~a--L~~-r~r~~~---vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPE---AQADYQRARIDRLGA--LLV-RHQTAD---LIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCc---cchHHHHHHHHHHHH--HHH-hhhHHH---HHHHHHHhhhcCCCCCHHHHHHH
Confidence 455788888887775554442232 221112221122221 100 000000 011222111 12457888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHHHHhhCChhhHHHHHHhhccc-------c----ccCCc
Q 005266 440 GQYAHSVGCYSEAAFHYVEAAKITESK---SMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPV-------Y----QMKDT 505 (705)
Q Consensus 440 G~~~~~~g~~~eA~~~f~~Al~l~~~~---~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~-------~----~~~~~ 505 (705)
|++++..++.++|+..|.+++.-.++. ........-+--.|+..+++++....++-+... + ..|++
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 999999999999999999987654321 111111234445566677777744433332220 0 11221
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LAr 585 (705)
.. ..+....+.++...|++.+|.+.+++.+..+ =||..+ +..+++++...|.+.+|+..++.+..+
T Consensus 414 d~-----~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a---P~n~~l----~~~~A~v~~~Rg~p~~A~~~~k~a~~l-- 479 (822)
T PRK14574 414 DW-----IEGQTLLVQSLVALNDLPTAQKKLEDLSSTA---PANQNL----RIALASIYLARDLPRKAEQELKAVESL-- 479 (822)
T ss_pred cH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHhhh--
Confidence 11 3467777888899999999999999887775 678654 458999999999999999999998877
Q ss_pred HcCChhhHHHHHHHHHHHHHHcCCchHHHH
Q 005266 586 KLYDIPTQIWALSVLTALYQQLGDRGNEME 615 (705)
Q Consensus 586 k~gD~~~q~~al~~L~~l~~~~Gd~~~A~e 615 (705)
-+ ...++...++.++..+|+..+|..
T Consensus 480 -~P---~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 480 -AP---RSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred -CC---ccHHHHHHHHHHHHhhhhHHHHHH
Confidence 22 347777788999999999888866
No 23
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.18 E-value=1.1e-10 Score=124.46 Aligned_cols=202 Identities=16% Similarity=0.115 Sum_probs=170.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CChhHHHHHHHHHHHHHHhhCCh-------------hh----HH
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT---ESKSMQAMCHAYAAVSYFCIGDA-------------ES----SS 490 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~---~~~~g~a~a~~nlalv~l~~gd~-------------d~----~~ 490 (705)
+++..--.||-..--.|.|+||+.+..+-+.+. +++.+++.++.|+|.||-..|.. ++ ++
T Consensus 93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 677777889999999999999998887777665 45888999999999999986642 11 34
Q ss_pred HHHHhhcccc---ccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC
Q 005266 491 QAIDLIGPVY---QMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL 567 (705)
Q Consensus 491 ~ALeli~~~~---~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l 567 (705)
.|.+.+..-- ...||+. . |..+|-++|..|+..|+|++|..+-.+-|.++ ++.|++--+-.++..||..|.-+
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~-a--qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia-~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRL-A--QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIA-QEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHH-h--hcchhcccCceeeeeccHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcccchhhhhh
Confidence 4433322210 0113322 1 35589999999999999999999999999999 58999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005266 568 HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYS 636 (705)
Q Consensus 568 g~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~ 636 (705)
|+.+-|.++|+.++.||.++|++-.++.+-..||..|--..+.++|.+++..|+.+.++|.++..++++
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra 317 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRA 317 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887653
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.13 E-value=1.4e-07 Score=103.44 Aligned_cols=197 Identities=15% Similarity=0.042 Sum_probs=147.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhH
Q 005266 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (705)
Q Consensus 346 ~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~ 425 (705)
++...+..+...|++++|.++++++++. .+. . . .
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~----------~~~----~---~-----~------------------------ 142 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDE----------GDF----A---E-----G------------------------ 142 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcC----------Ccc----h---H-----H------------------------
Confidence 4566677888899999999999888763 111 0 0 1
Q ss_pred HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChh--HHHHHHHHHHHHHHhhCChhh----HHHHHHhhccc
Q 005266 426 EAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--MQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPV 499 (705)
Q Consensus 426 ~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~--g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~ 499 (705)
++..+|.++...|++++|...|.++++..+.+. ..+....+++.++...|++++ +.++++.
T Consensus 143 ---------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---- 209 (389)
T PRK11788 143 ---------ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA---- 209 (389)
T ss_pred ---------HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH----
Confidence 112556777889999999999999888765532 234456678888888898776 4555542
Q ss_pred cccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005266 500 YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 579 (705)
Q Consensus 500 ~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~ 579 (705)
.|++ ..+++.+|.++...|++++|...++++++.. +.....++..++.+|...|+.++|...+++
T Consensus 210 --~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 210 --DPQC-------VRASILLGDLALAQGDYAAAIEALERVEEQD------PEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred --CcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2331 3478889999999999999999999997652 233446788999999999999999999999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 580 SLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 580 Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
++.+ .++. .. ...+++++...|++++|...++...+.
T Consensus 275 ~~~~---~p~~--~~--~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 275 ALEE---YPGA--DL--LLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHh---CCCc--hH--HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8776 2332 22 267899999999999999988876665
No 25
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.12 E-value=2.2e-08 Score=105.94 Aligned_cols=194 Identities=12% Similarity=0.109 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 434 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 434 ~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~---~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
+.+-.+|..+.+.+.|+.+++.|+.|++... ++..+-.+.+.++.++-...|++. ...|.++++.... +|-
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l--~d~ 200 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL--KDW 200 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc--Cch
Confidence 5667799999999999999999999999854 455566678888888888888877 6899999888632 221
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 586 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk 586 (705)
. .-.++.++|.+++++-.+|+..+|++++.+|.+++ -+.||+-+.+..+..||+||...||.+.|+.-|++|+...+.
T Consensus 201 ~-~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla-l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 201 S-LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA-LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred h-HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH-HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 1 11157899999999999999999999999999999 589999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCc-----hHHHHHHHHHHHHHHHHHHHH
Q 005266 587 LYDIPTQIWALSVLTALYQQLGDR-----GNEMENDEYRRKKLDELQKRL 631 (705)
Q Consensus 587 ~gD~~~q~~al~~L~~l~~~~Gd~-----~~A~e~~~~~~~~~~~l~~~~ 631 (705)
+||+.+|+.++...++.....--. =+|.+.-+...+...+++..+
T Consensus 279 ~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~ 328 (518)
T KOG1941|consen 279 LGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKL 328 (518)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhH
Confidence 999999999998887755443322 448888888777777766543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.09 E-value=1.8e-07 Score=109.24 Aligned_cols=484 Identities=14% Similarity=0.100 Sum_probs=285.0
Q ss_pred HHHHHHHhHHH---hhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCc
Q 005266 4 VAEGLWGLADY---HENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPS 80 (705)
Q Consensus 4 ~~~~L~~lAe~---~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~ 80 (705)
++.+|.+|++. |..+..+..|+.=+..+++-+.. .|. |+. ++|+ -|..++|+..+...-+.+..-...-+
T Consensus 232 ~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~--~l~--~LAn-~fyfK~dy~~v~~la~~ai~~t~~~~- 304 (1018)
T KOG2002|consen 232 CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPV--ALN--HLAN-HFYFKKDYERVWHLAEHAIKNTENKS- 304 (1018)
T ss_pred hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcH--HHH--HHHH-HHhhcccHHHHHHHHHHHHHhhhhhH-
Confidence 45566666665 77778999999999999976652 343 233 3444 45678999999999888776553333
Q ss_pred hhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 005266 81 CFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA 160 (705)
Q Consensus 81 ~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A 160 (705)
++-+.+|.++|+||.+|+.+.|+.+-..++..++ .++ .+. .+.+++.++..||+..|+-.+++.+..
T Consensus 305 ---~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~-------d~~-~l~-~~GlgQm~i~~~dle~s~~~fEkv~k~- 371 (1018)
T KOG2002|consen 305 ---IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN-------DNF-VLP-LVGLGQMYIKRGDLEESKFCFEKVLKQ- 371 (1018)
T ss_pred ---HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-------CCc-ccc-ccchhHHHHHhchHHHHHHHHHHHHHh-
Confidence 3447899999999999999999999999999877 331 111 246899999999999999999999987
Q ss_pred hhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhh
Q 005266 161 TEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHV 240 (705)
Q Consensus 161 ~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v 240 (705)
.++..+.+..|+.+|.+.. ........+.+..++..+..+.+- +.|-++.+.-|.-..+-. +..|.+|.+.
T Consensus 372 ---~p~~~etm~iLG~Lya~~~--~~~~~~d~a~~~l~K~~~~~~~d~-~a~l~laql~e~~d~~~s--L~~~~~A~d~- 442 (1018)
T KOG2002|consen 372 ---LPNNYETMKILGCLYAHSA--KKQEKRDKASNVLGKVLEQTPVDS-EAWLELAQLLEQTDPWAS--LDAYGNALDI- 442 (1018)
T ss_pred ---CcchHHHHHHHHhHHHhhh--hhhHHHHHHHHHHHHHHhcccccH-HHHHHHHHHHHhcChHHH--HHHHHHHHHH-
Confidence 8889999999999999884 444555555555555555444432 122222111111000000 1112222221
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCc-cccccccccCCccc
Q 005266 241 DNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTG-KEFLEPSYFGNARQ 319 (705)
Q Consensus 241 ~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~-~~~l~~~~~~~~~~ 319 (705)
+ +++.++ +| +++.|-+-.+.-.+ +++... ...+++-...+.+ ..+.+- ..+...+.++-++.
T Consensus 443 --L---~~~~~~-ip--~E~LNNvaslhf~~--g~~~~A-----~~~f~~A~~~~~~--~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 443 --L---ESKGKQ-IP--PEVLNNVASLHFRL--GNIEKA-----LEHFKSALGKLLE--VANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred --H---HHcCCC-CC--HHHHHhHHHHHHHh--cChHHH-----HHHHHHHhhhhhh--hcCccccccchhHHHHHHHHH
Confidence 1 111111 11 23322222222121 222110 1111111111111 000000 00000000000000
Q ss_pred ccccccccCCCCcc---c-ccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhh
Q 005266 320 AWGDKLVLAPSPMD---G-EWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHS 395 (705)
Q Consensus 320 ~~~~~~~~~~~~l~---~-~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~ 395 (705)
.+ .++....+ | ..+.++..|+-||+=.+...+.+++..+|...+.+|+...+ .+.
T Consensus 506 ~E----~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~--------------~np--- 564 (1018)
T KOG2002|consen 506 LE----ELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS--------------SNP--- 564 (1018)
T ss_pred HH----hhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc--------------CCc---
Confidence 00 00000001 1 45566668999999999889999999999999999988511 111
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhh-----------hHHHHHHHHHHHHHHc------------CCHHHH
Q 005266 396 AIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA-----------CESMIEMLRGQYAHSV------------GCYSEA 452 (705)
Q Consensus 396 ~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~-----------~~a~~~~llG~~~~~~------------g~~~eA 452 (705)
..| +.+=. +.|..++|.-|++. -++-....||-++... +.++.|
T Consensus 565 ~ar--sl~G~-----------~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 565 NAR--SLLGN-----------LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHH--HHHHH-----------HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 233 11110 11235566666553 2456667788876642 223345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHH
Q 005266 453 AFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEA 532 (705)
Q Consensus 453 ~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA 532 (705)
++.|.++++..+.+ ..|...+|+|....|.++ .|+++|..+-....+. ..+|.++|.+++.+|+|..|
T Consensus 632 lq~y~kvL~~dpkN---~yAANGIgiVLA~kg~~~---~A~dIFsqVrEa~~~~------~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 632 LQLYGKVLRNDPKN---MYAANGIGIVLAEKGRFS---EARDIFSQVREATSDF------EDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHhcCcch---hhhccchhhhhhhccCch---HHHHHHHHHHHHHhhC------CceeeeHHHHHHHHHHHHHH
Confidence 55555555544432 255667788888777754 4444444331100100 23799999999999999999
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 533 RNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 533 ~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
.+.++.+++... ...+ ...+..||.+++..|.+.+|.+.+..|+.++
T Consensus 700 IqmYe~~lkkf~-~~~~----~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 700 IQMYENCLKKFY-KKNR----SEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHhc-ccCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999974 3333 3578889999999999999999988887664
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.09 E-value=3e-07 Score=106.81 Aligned_cols=378 Identities=16% Similarity=0.120 Sum_probs=237.2
Q ss_pred ChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccc
Q 005266 39 LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSS 118 (705)
Q Consensus 39 ~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~ 118 (705)
-+-.|++..|..|..||-+ +|+++|...+.-+....+..+ .+++-|++||.+.|+...+.+.-..|.-+.++
T Consensus 134 ~l~~~l~~ll~eAN~lfar-g~~eeA~~i~~EvIkqdp~~~-------~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~ 205 (895)
T KOG2076|consen 134 KLAPELRQLLGEANNLFAR-GDLEEAEEILMEVIKQDPRNP-------IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK 205 (895)
T ss_pred ccCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCccch-------hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 4677999999999999999 999999999997766655555 99999999999999998888777776666664
Q ss_pred cccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhH
Q 005266 119 ASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCD 198 (705)
Q Consensus 119 ~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~ 198 (705)
++ -|++.+|.....++.+..|.-.+.+.+.+ ++++.+++..-+.++-.+ .+...+....
T Consensus 206 ---d~-------e~W~~ladls~~~~~i~qA~~cy~rAI~~----~p~n~~~~~ers~L~~~~---G~~~~Am~~f---- 264 (895)
T KOG2076|consen 206 ---DY-------ELWKRLADLSEQLGNINQARYCYSRAIQA----NPSNWELIYERSSLYQKT---GDLKRAMETF---- 264 (895)
T ss_pred ---Ch-------HHHHHHHHHHHhcccHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHh---ChHHHHHHHH----
Confidence 22 35577899999999999999999887776 787788777777666333 1111110000
Q ss_pred HHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCCh
Q 005266 199 RVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPS 278 (705)
Q Consensus 199 ~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~ 278 (705)
T Consensus 265 -------------------------------------------------------------------------------- 264 (895)
T KOG2076|consen 265 -------------------------------------------------------------------------------- 264 (895)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCC
Q 005266 279 RERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKG 358 (705)
Q Consensus 279 ~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g 358 (705)
++..+- .+ |.+++|.-.. ++.+ +-.+...+
T Consensus 265 -------------~~l~~~------~p-------------------------~~d~er~~d~-----i~~~-~~~~~~~~ 294 (895)
T KOG2076|consen 265 -------------LQLLQL------DP-------------------------PVDIERIEDL-----IRRV-AHYFITHN 294 (895)
T ss_pred -------------HHHHhh------CC-------------------------chhHHHHHHH-----HHHH-HHHHHHhh
Confidence 000111 00 0122222211 1110 01111112
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHH----------Hh--h--hhhhh
Q 005266 359 LFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVA----------VE--L--TRSGF 424 (705)
Q Consensus 359 ~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~----------~~--L--~~~~~ 424 (705)
.-++|.+.+..++.. -+ .+.+.+.-.+. +.+| |.+... |+ + .-++|
T Consensus 295 ~~e~a~~~le~~~s~-------~~-----~~~~~ed~ni~-ael~-------l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 295 ERERAAKALEGALSK-------EK-----DEASLEDLNIL-AELF-------LKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred HHHHHHHHHHHHHhh-------cc-----ccccccHHHHH-HHHH-------HHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 224555555555441 11 11111111111 1111 111111 11 0 02233
Q ss_pred HHhhhh----------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh
Q 005266 425 VEAQEA----------------CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES 488 (705)
Q Consensus 425 ~~a~~~----------------~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~ 488 (705)
.+-..- .-+.++..+|++++..+...+++-||.. .-...++-..-...+++-.+.+.|.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~--~~n~~~~d~~dL~~d~a~al~~~~~--- 429 (895)
T KOG2076|consen 355 DTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLV--EDNVWVSDDVDLYLDLADALTNIGK--- 429 (895)
T ss_pred hhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHH--HhcCChhhhHHHHHHHHHHHHhccc---
Confidence 211100 1244688999999999999999999975 2221244445567888888888777
Q ss_pred HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCC
Q 005266 489 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH 568 (705)
Q Consensus 489 ~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg 568 (705)
+..|++++.|+...++... +.+|+.+|.+++..|.+++|++++.++|.+. ...- .+...|+.++..+|
T Consensus 430 ~~~Al~~l~~i~~~~~~~~-----~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~------D~Ri~Lasl~~~~g 497 (895)
T KOG2076|consen 430 YKEALRLLSPITNREGYQN-----AFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNL------DARITLASLYQQLG 497 (895)
T ss_pred HHHHHHHHHHHhcCccccc-----hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCch------hhhhhHHHHHHhcC
Confidence 6778888888866555322 6699999999999999999999999999996 2222 47788999999999
Q ss_pred ChHHHHHHHHHHH---HHHHHcCChhhHHHHHHHHHHHHHHcCCchH
Q 005266 569 DTVQAREILRSSL---TLAKKLYDIPTQIWALSVLTALYQQLGDRGN 612 (705)
Q Consensus 569 ~~~qA~~~~~~Al---~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~ 612 (705)
++++|.+.+++-. ....+..-..-....+....+++...|+.++
T Consensus 498 ~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 498 NHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred CHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 9999998887722 0011111122233344556678888888765
No 28
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.1e-08 Score=109.08 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=128.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhh
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITES--KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~--~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
..|+.+...|..|+|.++|-.|.++.+. .. .+.+|+=|-+.+...- +.+|++ ..|.|
T Consensus 351 ~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP-----~LYlgmey~~t~n~kLAe~Ff~~A~a------i~P~D------ 413 (611)
T KOG1173|consen 351 AFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP-----SLYLGMEYMRTNNLKLAEKFFKQALA------IAPSD------ 413 (611)
T ss_pred HHhHHhhhcchHHHHHHHHHHHHHhccCCcch-----HHHHHHHHHHhccHHHHHHHHHHHHh------cCCCc------
Confidence 5688888899999999999999998765 23 4666777776666422 677777 34554
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHH--HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ--LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~--l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
...+.-+|++.+..+.|.+|..+|+.+|.-. +..++.. ++. .++.||+++..++.+++|...++.|+.+.-+..+
T Consensus 414 -plv~~Elgvvay~~~~y~~A~~~f~~~l~~i-k~~~~e~~~w~p-~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 414 -PLVLHELGVVAYTYEEYPEALKYFQKALEVI-KSVLNEKIFWEP-TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred -chhhhhhhheeehHhhhHHHHHHHHHHHHHh-hhccccccchhH-HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence 3478888999999999999999999999776 4566654 444 7999999999999999999999999998665544
Q ss_pred hhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 590 IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 590 ~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
+...+|-+|..+|+++.|.+++.-++.+.
T Consensus 491 ------~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 491 ------THASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred ------HHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 44567889999999999999998877654
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=3.8e-08 Score=97.66 Aligned_cols=196 Identities=16% Similarity=0.124 Sum_probs=146.9
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 005266 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (705)
Q Consensus 344 aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~ 423 (705)
+-++...+..+...|++++|.++++++++. .|.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----------~p~------------------------------------- 63 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH----------DPD------------------------------------- 63 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------Ccc-------------------------------------
Confidence 556667788888899999999988888764 111
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccc
Q 005266 424 FVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPV 499 (705)
Q Consensus 424 ~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~ 499 (705)
.+.++..+|.++..+|++++|...|.++++..++.. .+..+++.++...|++++ +.++++..
T Consensus 64 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--- 129 (234)
T TIGR02521 64 --------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG---DVLNNYGTFLCQQGKYEQAMQQFEQAIEDP--- 129 (234)
T ss_pred --------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhcc---
Confidence 011223678899999999999999999999876533 357788889988898776 44444410
Q ss_pred cccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005266 500 YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 579 (705)
Q Consensus 500 ~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~ 579 (705)
..+. ....++.+|.++...|++++|...+.++++.. . .+ ..++..+|.++...|++++|.+.+++
T Consensus 130 -~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~--~~----~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 130 -LYPQ-------PARSLENAGLCALKAGDFDKAEKYLTRALQID-P--QR----PESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred -cccc-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c--CC----hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111 24578889999999999999999999998874 2 22 24677899999999999999999999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005266 580 SLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 580 Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
++.+ .++.. ..+..++.++...|+.++|.+..+...
T Consensus 195 ~~~~---~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 195 YQQT---YNQTA---ESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHh---CCCCH---HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9887 23332 233367889999999999988665543
No 30
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.07 E-value=3.4e-06 Score=103.12 Aligned_cols=227 Identities=15% Similarity=0.089 Sum_probs=160.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhH
Q 005266 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (705)
Q Consensus 346 ~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~ 425 (705)
++...+..+...|++++|..++++++...+. .+.. . .+
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~----~~~~-~----------~~--------------------------- 570 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEE----QHLE-Q----------LP--------------------------- 570 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----hccc-c----------cc---------------------------
Confidence 3344466677899999999999999987433 1100 0 00
Q ss_pred HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccc
Q 005266 426 EAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES--KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPV 499 (705)
Q Consensus 426 ~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~--~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~ 499 (705)
....++..+|.++...|++++|..++.+++.+... ......+..+++.++...|+++. +.+++++....
T Consensus 571 -----~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~ 645 (903)
T PRK04841 571 -----MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG 645 (903)
T ss_pred -----HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 00011235688888999999999999999887543 23345677788999999999877 44554433332
Q ss_pred cccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005266 500 YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 579 (705)
Q Consensus 500 ~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~ 579 (705)
+..... .+.........+...|+.++|...+.+..... .+........+..+|.++...|++++|...+++
T Consensus 646 ----~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 716 (903)
T PRK04841 646 ----RYHSDW--IANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FANNHFLQGQWRNIARAQILLGQFDEAEIILEE 716 (903)
T ss_pred ----cccHhH--hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 110000 01111122344556899999999988765432 233333444567899999999999999999999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Q 005266 580 SLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 628 (705)
Q Consensus 580 Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~ 628 (705)
+++.++..|+.+..+.++..++.++...|++++|.+.+..+.+..+..+
T Consensus 717 al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 717 LNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999999999999999998886544
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=2.2e-08 Score=113.06 Aligned_cols=170 Identities=17% Similarity=0.162 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 005266 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (705)
Q Consensus 344 aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~ 423 (705)
+.+|.+.+--+-....+|+|.+++..|++. +.+|-+.|
T Consensus 455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~-----------------~~rhYnAw------------------------- 492 (638)
T KOG1126|consen 455 AYAYTLLGHESIATEEFDKAMKSFRKALGV-----------------DPRHYNAW------------------------- 492 (638)
T ss_pred chhhhhcCChhhhhHHHHhHHHHHHhhhcC-----------------CchhhHHH-------------------------
Confidence 345555555555667788899888888885 11233445
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhcccccc-
Q 005266 424 FVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQM- 502 (705)
Q Consensus 424 ~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~- 502 (705)
|-+|++|.++++++.|+.||++|+.+.+.++ .....++.++.+.|+. ++||.+++.++..
T Consensus 493 -------------YGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns---vi~~~~g~~~~~~k~~---d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 493 -------------YGLGTVYLKQEKLEFAEFHFQKAVEINPSNS---VILCHIGRIQHQLKRK---DKALQLYEKAIHLD 553 (638)
T ss_pred -------------HhhhhheeccchhhHHHHHHHhhhcCCccch---hHHhhhhHHHHHhhhh---hHHHHHHHHHHhcC
Confidence 4789999999999999999999999988755 3355566777666664 4555555544332
Q ss_pred CCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 005266 503 KDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 582 (705)
Q Consensus 503 ~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~ 582 (705)
|.+ ...-|..|.+++..++|++|+..|++-..++ --++.++..||.+|-++|++..|...+.-|+.
T Consensus 554 ~kn-------~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-------P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 554 PKN-------PLCKYHRASILFSLGRYVEALQELEELKELV-------PQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred CCC-------chhHHHHHHHHHhhcchHHHHHHHHHHHHhC-------cchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 333 2366777888888999999999999876664 23456899999999999999999999988887
Q ss_pred HHHHcC
Q 005266 583 LAKKLY 588 (705)
Q Consensus 583 LArk~g 588 (705)
|--|-.
T Consensus 620 ldpkg~ 625 (638)
T KOG1126|consen 620 LDPKGA 625 (638)
T ss_pred CCCccc
Confidence 744433
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.02 E-value=8.2e-07 Score=99.27 Aligned_cols=142 Identities=14% Similarity=0.094 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccc
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 507 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~ 507 (705)
.+.+...+|..+...|++++|.....++++..++........+ .....+..++.+. +++++. ..|++..
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l-~~~~~l~~~~~~~~~~~~e~~lk------~~p~~~~ 334 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLC-LPIPRLKPEDNEKLEKLIEKQAK------NVDDKPK 334 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHH-HHhhhcCCCChHHHHHHHHHHHH------hCCCChh
Confidence 3445567888999999999999999999998877542221111 1222233344433 344443 3455421
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc
Q 005266 508 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 587 (705)
Q Consensus 508 g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~ 587 (705)
+..+..+|.++++.|++++|+++|+.+..... .-++ + .+..+|.++..+|+.++|.+++++++.++-.+
T Consensus 335 -----~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~--~p~~--~--~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 335 -----CCINRALGQLLMKHGEFIEAADAFKNVAACKE--QLDA--N--DLAMAADAFDQAGDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred -----HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc--CCCH--H--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 15788999999999999999999996544431 2222 2 23488999999999999999999999999888
Q ss_pred CChh
Q 005266 588 YDIP 591 (705)
Q Consensus 588 gD~~ 591 (705)
+|.+
T Consensus 404 ~~~~ 407 (409)
T TIGR00540 404 QDNI 407 (409)
T ss_pred cccC
Confidence 8754
No 33
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.01 E-value=5.9e-06 Score=101.07 Aligned_cols=345 Identities=12% Similarity=0.016 Sum_probs=218.3
Q ss_pred HHHHhhcchHHHHHHHHHHHHHhhcCC--chhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchh-h
Q 005266 53 LLLKHTHNVNHAKSHLERSQLLLKAIP--SCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLW-S 129 (705)
Q Consensus 53 iL~e~T~N~~~A~thLeka~~l~~~i~--~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W-~ 129 (705)
.++-.++++++|..+++++.......+ .-.+.+..+...++.++...|++..+...++++++.... ...| .
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~ 490 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL------TWYYSR 490 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC------ccHHHH
Confidence 334577899999999998876654432 122456667777899999999999999999999885432 1111 1
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccc
Q 005266 130 CNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRR 209 (705)
Q Consensus 130 ~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~ 209 (705)
......++.++...|++..|...++.....+...++....+......+.+++.+ .+++.+...+.++
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~a------------ 557 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ-GFLQAAYETQEKA------------ 557 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHH------------
Confidence 113345788899999999999999999988877777544333222222222211 3332222211111
Q ss_pred cccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHH
Q 005266 210 GQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQA 289 (705)
Q Consensus 210 ~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~ 289 (705)
+
T Consensus 558 -------------------------------------l------------------------------------------ 558 (903)
T PRK04841 558 -------------------------------------F------------------------------------------ 558 (903)
T ss_pred -------------------------------------H------------------------------------------
Confidence 0
Q ss_pred HHHHHHHhccCCCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 005266 290 KLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQS 369 (705)
Q Consensus 290 ~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~ 369 (705)
...+. ... + . . | ..+.++.+.+..+...|++++|...+.+
T Consensus 559 ---~~~~~-----~~~--~------------~-----------~--~-----~~~~~~~~la~~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 559 ---QLIEE-----QHL--E------------Q-----------L--P-----MHEFLLRIRAQLLWEWARLDEAEQCARK 598 (903)
T ss_pred ---HHHHH-----hcc--c------------c-----------c--c-----HHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 01111 000 0 0 0 0 0112233345556667999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCH
Q 005266 370 GMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCY 449 (705)
Q Consensus 370 al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~ 449 (705)
++..... .+ + .+. +.....+|.++...|++
T Consensus 599 al~~~~~----~~--~-----------~~~---------------------------------~~~~~~la~~~~~~G~~ 628 (903)
T PRK04841 599 GLEVLSN----YQ--P-----------QQQ---------------------------------LQCLAMLAKISLARGDL 628 (903)
T ss_pred hHHhhhc----cC--c-----------hHH---------------------------------HHHHHHHHHHHHHcCCH
Confidence 9886211 11 0 000 01122578888899999
Q ss_pred HHHHHHHHHHHHhcCChh---HHHHHHHHH-HHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHH
Q 005266 450 SEAAFHYVEAAKITESKS---MQAMCHAYA-AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR 525 (705)
Q Consensus 450 ~eA~~~f~~Al~l~~~~~---g~a~a~~nl-alv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~ 525 (705)
++|..++.++..+..... .......++ ...+...|+.+...+.++...+. . ++... . ....+...|.++..
T Consensus 629 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~-~~~~~-~--~~~~~~~~a~~~~~ 703 (903)
T PRK04841 629 DNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-E-FANNH-F--LQGQWRNIARAQIL 703 (903)
T ss_pred HHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-C-Cccch-h--HHHHHHHHHHHHHH
Confidence 999999999987754321 111111112 23333457766655554433221 0 11111 0 12345678999999
Q ss_pred hcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 526 QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 526 ~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
.|++++|...+++++..+ +..|.....+.++..+|.++...|+.++|.+.+.+|++++...|-..
T Consensus 704 ~g~~~~A~~~l~~al~~~-~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~r 768 (903)
T PRK04841 704 LGQFDEAEIILEELNENA-RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFIS 768 (903)
T ss_pred cCCHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccchhh
Confidence 999999999999999998 56888888999999999999999999999999999999999888753
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.95 E-value=1.3e-06 Score=97.41 Aligned_cols=310 Identities=13% Similarity=0.038 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHH-HHHHHHcCCChhHHHHHHHHHhhccc
Q 005266 41 IIEVKTRLRISTLLLKHT-HNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLL-SQCYHLVGAIPPQKLILYKALDLTSS 118 (705)
Q Consensus 41 ~~EA~~rLrla~iL~e~T-~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lL-A~~y~~~~~~~~ak~~l~kai~~~~~ 118 (705)
|-.-|.+-.+-+-+.... +|++.|+..+.++-...+ .| ..++++ |+.-.+.|+...+..++.++.+..+
T Consensus 79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p-------~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~- 149 (398)
T PRK10747 79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QP-------VVNYLLAAEAAQQRGDEARANQHLERAAELAD- 149 (398)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-ch-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-
Confidence 344455655666666665 999999988887644321 23 555666 5555999999999999999998776
Q ss_pred cccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhH
Q 005266 119 ASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCD 198 (705)
Q Consensus 119 ~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~ 198 (705)
++.|. -.+..+.++..+||+..|...++...+. ++....++..+..+++.. .+.+++...+.+..
T Consensus 150 ------~~~~~--~~l~~a~l~l~~g~~~~Al~~l~~~~~~----~P~~~~al~ll~~~~~~~---gdw~~a~~~l~~l~ 214 (398)
T PRK10747 150 ------NDQLP--VEITRVRIQLARNENHAARHGVDKLLEV----APRHPEVLRLAEQAYIRT---GAWSSLLDILPSMA 214 (398)
T ss_pred ------cchHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHH---HhHHHHHHHHHHHH
Confidence 55552 2234599999999999999999997776 788899999999999887 56666666665554
Q ss_pred HHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCCh
Q 005266 199 RVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPS 278 (705)
Q Consensus 199 ~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~ 278 (705)
+... +++ +.+ .++. ++. .+..+.......+
T Consensus 215 k~~~-~~~-------------~~~------------------~~l~-------------~~a--~~~l~~~~~~~~~--- 244 (398)
T PRK10747 215 KAHV-GDE-------------EHR------------------AMLE-------------QQA--WIGLMDQAMADQG--- 244 (398)
T ss_pred HcCC-CCH-------------HHH------------------HHHH-------------HHH--HHHHHHHHHHhcC---
Confidence 3321 000 100 0000 000 0000000000000
Q ss_pred hhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccccCCCCcccccccchh-hHHHHHHHHHHHhcCC
Q 005266 279 RERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSA-VYALVDLMVVILGRPK 357 (705)
Q Consensus 279 ~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~-~~aL~yll~~~~~~~~ 357 (705)
...+.+. .+++|+.. ..+-+.+..+......
T Consensus 245 ---------~~~l~~~---------------------------------------w~~lp~~~~~~~~~~~~~A~~l~~~ 276 (398)
T PRK10747 245 ---------SEGLKRW---------------------------------------WKNQSRKTRHQVALQVAMAEHLIEC 276 (398)
T ss_pred ---------HHHHHHH---------------------------------------HHhCCHHHhCCHHHHHHHHHHHHHC
Confidence 0111111 22333322 2345566677888899
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHH
Q 005266 358 GLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEM 437 (705)
Q Consensus 358 g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~ 437 (705)
|+.++|.+.++++++. .+. ..+. ..|. ++. .....-.+...+-....+|.++..+.
T Consensus 277 g~~~~A~~~L~~~l~~----------~~~--------~~l~--~l~~--~l~--~~~~~~al~~~e~~lk~~P~~~~l~l 332 (398)
T PRK10747 277 DDHDTAQQIILDGLKR----------QYD--------ERLV--LLIP--RLK--TNNPEQLEKVLRQQIKQHGDTPLLWS 332 (398)
T ss_pred CCHHHHHHHHHHHHhc----------CCC--------HHHH--HHHh--hcc--CCChHHHHHHHHHHHhhCCCCHHHHH
Confidence 9999999999888774 111 1121 1121 110 11111113333333466778899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHH
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHF 517 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~ 517 (705)
.+|.++...|++++|..+|+++++..++.. .+.
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~~P~~~-----------------------------------------------~~~ 365 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQRPDAY-----------------------------------------------DYA 365 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-----------------------------------------------HHH
Confidence 999999999999999999999888754422 344
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 518 AYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 518 ~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
.+|.++...|+.++|.++++++|.++
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 56667777888888888888888775
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.94 E-value=9.3e-08 Score=94.84 Aligned_cols=166 Identities=17% Similarity=0.147 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
..+.+++.+|..+...|++++|...|.++++..++. ..+..+++.++...|+++. +.++++. .|++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~- 98 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD---YLAYLALALYYQQLGELEKAEDSFRRALTL------NPNN- 98 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCC-
Confidence 446778899999999999999999999999886653 3467778999999999876 5555552 2321
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 586 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk 586 (705)
..+++.+|.++...|++++|...+.+++.... . ......+..+|.++...|++++|.+.++.++.....
T Consensus 99 ------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 99 ------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL--Y---PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred ------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc--c---ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 45788899999999999999999999987531 1 223346778999999999999999999999876322
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 587 LYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 587 ~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
...+...++.++...|++++|.+.++.....
T Consensus 168 ------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 168 ------RPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred ------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1335567899999999999999988776654
No 36
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.90 E-value=2e-05 Score=94.89 Aligned_cols=446 Identities=10% Similarity=0.022 Sum_probs=248.8
Q ss_pred hcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHH
Q 005266 17 NKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCY 96 (705)
Q Consensus 17 ~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y 96 (705)
+.+++..|+..|+-+++..|.-+|-+= -++.++. ..+++++|+.+++|+. .+... - +...-.+|.+|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-----dll~l~~-~~G~~~~A~~~~eka~--~p~n~-~----~~~llalA~ly 112 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-----DWLQIAG-WAGRDQEVIDVYERYQ--SSMNI-S----SRGLASAARAY 112 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-----HHHHHHH-HcCCcHHHHHHHHHhc--cCCCC-C----HHHHHHHHHHH
Confidence 457888999999999988773333332 3444333 3499999999999997 33332 0 13333348899
Q ss_pred HHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 005266 97 HLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAI 176 (705)
Q Consensus 97 ~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~ 176 (705)
...|++..|..+++++++..+. +.= .++.++.++...+++..|++.++++... .+....+ +..
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~-------n~~---~l~gLa~~y~~~~q~~eAl~~l~~l~~~----dp~~~~~---l~l 175 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPT-------NPD---LISGMIMTQADAGRGGVVLKQATELAER----DPTVQNY---MTL 175 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-------CHH---HHHHHHHHHhhcCCHHHHHHHHHHhccc----CcchHHH---HHH
Confidence 9999999999999999999884 221 2235688999999999999998887664 3332222 333
Q ss_pred HHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHH-HHhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 005266 177 LHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFY-RLRICDYKNAAHHVDNLDAAMKADKQKMQ 255 (705)
Q Consensus 177 ~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~-~L~vc~~~~~~~~v~~l~~~l~~~~qk~~ 255 (705)
+++.... .+..+ ++...+++++. .| +.. +.+.-++ .|.. ..-..+++.-+ ++-|
T Consensus 176 ayL~~~~-~~~~~---AL~~~ekll~~-~P-------~n~---e~~~~~~~~l~~---------~~~~~~a~~l~-~~~p 230 (822)
T PRK14574 176 SYLNRAT-DRNYD---ALQASSEAVRL-AP-------TSE---EVLKNHLEILQR---------NRIVEPALRLA-KENP 230 (822)
T ss_pred HHHHHhc-chHHH---HHHHHHHHHHh-CC-------CCH---HHHHHHHHHHHH---------cCCcHHHHHHH-HhCc
Confidence 3333221 33333 44555555542 12 211 2222222 1110 11122222111 1111
Q ss_pred ----HHHHHhhhhHHhhhhcCCCCCCh----hhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCccccccccccc
Q 005266 256 ----EIQQLSSELDALNQSLSRPDLPS----RERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVL 327 (705)
Q Consensus 256 ----~~q~l~~~l~~l~~~L~~~~~~~----~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 327 (705)
..+..|.+.+.....+.....++ ..-..+++.+.++++.++. +.. .| +.
T Consensus 231 ~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~-----~~~-~p-----------~~------ 287 (822)
T PRK14574 231 NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR-----WGK-DP-----------EA------ 287 (822)
T ss_pred cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh-----ccC-CC-----------cc------
Confidence 00222333333333332222111 1224567777888887776 321 01 00
Q ss_pred CCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhh-HHHHHHHHHHH
Q 005266 328 APSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHS-AIWMAGVYLML 406 (705)
Q Consensus 328 ~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~-~~w~~~~~~~l 406 (705)
+-.|. .+..+- ...+...|.++++.+.++.--. .+ ..++.- ..|++..|+.+
T Consensus 288 -----~~~~~-----~~~~Dr--l~aL~~r~r~~~vi~~y~~l~~--------~~-------~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 288 -----QADYQ-----RARIDR--LGALLVRHQTADLIKEYEAMEA--------EG-------YKMPDYARRWAASAYIDR 340 (822)
T ss_pred -----chHHH-----HHHHHH--HHHHHHhhhHHHHHHHHHHhhh--------cC-------CCCCHHHHHHHHHHHHhc
Confidence 00011 111222 2334455667777665544322 22 111122 56666666532
Q ss_pred HHHHHhHHHHHhhhhhhhHHh-----hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------------ChhHH
Q 005266 407 LMQFLENKVAVELTRSGFVEA-----QEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE------------SKSMQ 469 (705)
Q Consensus 407 ~~~~Le~~~~~~L~~~~~~~a-----~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~------------~~~g~ 469 (705)
+-- .-+..+ ....... ..+.+...+.-|--.+.-.+++++|........+..+ .+.-+
T Consensus 341 ~~P----~kA~~l-~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 341 RLP----EKAAPI-LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred CCc----HHHHHH-HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 211 000100 0000000 0111222234566677789999999999998776333 12334
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccC
Q 005266 470 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 549 (705)
Q Consensus 470 a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn 549 (705)
..+...++.++...||.++.++.++-.-. ..|++ .......|.++..+|++.+|+..++.++.+. . .+
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n-------~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P--~~ 483 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPAN-------QNLRIALASIYLARDLPRKAEQELKAVESLA-P--RS 483 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-C--cc
Confidence 56677778888888997664444443211 34664 4567888999999999999999998887663 1 12
Q ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcC
Q 005266 550 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 588 (705)
Q Consensus 550 ~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~g 588 (705)
-.+...+|.++..+|+..+|.+..+..+++.-+..
T Consensus 484 ----~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 484 ----LILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred ----HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 23667899999999999999998888876654443
No 37
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=3.2e-05 Score=85.06 Aligned_cols=469 Identities=14% Similarity=0.102 Sum_probs=273.3
Q ss_pred HHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhcccccc
Q 005266 43 EVKTRLRISTLLLKH-THNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQ 121 (705)
Q Consensus 43 EA~~rLrla~iL~e~-T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~ 121 (705)
+.|-.++..+.+|.. ....-+|++||+-+ +-.|+-+++.+.||.-|+||...+..-++
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg---------------------~lL~~yT~N~elAksHLekA~~i~~~ip~ 82 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLG---------------------ALLLRYTKNVELAKSHLEKAWLISKSIPS 82 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHH---------------------HHHHHHhccHHHHHHHHHHHHHHHccccc
Confidence 445666666666643 33457888888843 22456677889999999999998874332
Q ss_pred ccccchhhHhHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHH
Q 005266 122 DVAVKLWSCNFNSQLANAFIIEG-DYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRV 200 (705)
Q Consensus 122 ~~~~~~W~~~f~~~lA~~~~~~~-d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~ 200 (705)
-|. .+ |.=..+||.+|.... .+..|-..|++.+.+++..-.=.=..+|-|++++..- .++..+..+|.- .
T Consensus 83 fyd-vK--f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~id---kD~~sA~elLav---g 153 (629)
T KOG2300|consen 83 FYD-VK--FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIID---KDFPSALELLAV---G 153 (629)
T ss_pred HHh-hh--hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhh---ccchhHHHHHhc---c
Confidence 221 11 122346888888876 7888999999988875432222455677777766544 666666655411 1
Q ss_pred hhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh----------hH-----
Q 005266 201 WESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSE----------LD----- 265 (705)
Q Consensus 201 ~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~----------l~----- 265 (705)
.+ - ..+.-.+++++||.|-.-..+.-..-...|.+.+. .+.+||+- |+
T Consensus 154 a~-----s-----Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~-------~~~qi~~n~~sdk~~~E~LkvFyl~ 216 (629)
T KOG2300|consen 154 AE-----S-----ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQ-------RCGQIWQNISSDKTQKEMLKVFYLV 216 (629)
T ss_pred cc-----c-----cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHH-------HHHHHHhccCCChHHHHHHHHHHHH
Confidence 11 0 01112378888885444332221111222322222 11233321 12
Q ss_pred -HhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccccCCC-CcccccccchhhH
Q 005266 266 -ALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPS-PMDGEWLPKSAVY 343 (705)
Q Consensus 266 -~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~WLpk~~~~ 343 (705)
.|..|+..|.++. ...-++ +||. . ++. ...++ +.+.+||+.....
T Consensus 217 lql~yy~~~gq~rt--------~k~~lk-QLQ~-s---iqt--------------------ist~~~~h~e~ilgsps~~ 263 (629)
T KOG2300|consen 217 LQLSYYLLPGQVRT--------VKPALK-QLQD-S---IQT--------------------ISTSSRGHDEKILGSPSPI 263 (629)
T ss_pred HHHHHHhcccchhh--------hHHHHH-HHHH-H---Hhc--------------------cCCCCCCccccccCCCChH
Confidence 2445777665522 223334 4444 0 221 01111 3568999999988
Q ss_pred HHHHHHH----HHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhh
Q 005266 344 ALVDLMV----VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVEL 419 (705)
Q Consensus 344 aL~yll~----~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L 419 (705)
-++++.. +.++...-....-.+|++++.+.-|+.+.+.. .+ ... +. +.
T Consensus 264 l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~e---kl-------------------kq~--d~--~s-- 315 (629)
T KOG2300|consen 264 LFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTE---KL-------------------KQA--DL--MS-- 315 (629)
T ss_pred HHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHh---hc-------------------ccc--cc--hh--
Confidence 8888776 33344444444577899999887666444411 00 000 00 00
Q ss_pred hhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhC-------Chhh----
Q 005266 420 TRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG-------DAES---- 488 (705)
Q Consensus 420 ~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~g-------d~d~---- 488 (705)
.+.. +..-..+-.+....+-+|++.+|++-.......+....+.-......+.++.-.| -++.
T Consensus 316 ---rils---m~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~h 389 (629)
T KOG2300|consen 316 ---RILS---MFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFH 389 (629)
T ss_pred ---HHHH---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHH
Confidence 0000 0111222234555666899999998877766654433222222222223322223 3333
Q ss_pred HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCC
Q 005266 489 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH 568 (705)
Q Consensus 489 ~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg 568 (705)
+..|+.+... ..+ +|.+-.+++..|.++|+-+.-...+..-=..-+-..+...+.+.++..-|-..+..+
T Consensus 390 f~~a~k~t~~--------~dl--~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn 459 (629)
T KOG2300|consen 390 FIEATKLTES--------IDL--QAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQN 459 (629)
T ss_pred HHHHHHhhhH--------HHH--HHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 4555554333 223 688888999999998886654444432111100123455788889999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 005266 569 DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAY 635 (705)
Q Consensus 569 ~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~ 635 (705)
+..||..-..+.+.+++.-+..+-.+..+..||.+.-..|+..++++.-.-.+..+.++.+-..+=.
T Consensus 460 ~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLw 526 (629)
T KOG2300|consen 460 DLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLW 526 (629)
T ss_pred cHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHH
Confidence 9999999999999999777777788889999999999999999998877777776665554444444
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.4e-05 Score=88.03 Aligned_cols=434 Identities=16% Similarity=0.131 Sum_probs=252.7
Q ss_pred hhhhhHHHH-HHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 005266 83 ELKCRTFSL-LSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCAT 161 (705)
Q Consensus 83 dlK~~~~~l-LA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~ 161 (705)
.+|+..... ...-|++.|.++.|..+-.+||++.+. -.- |+.-+|-+|..-|||...++-.-+...+
T Consensus 111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~-------epi---FYsNraAcY~~lgd~~~Vied~TkALEl-- 178 (606)
T KOG0547|consen 111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD-------EPI---FYSNRAACYESLGDWEKVIEDCTKALEL-- 178 (606)
T ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC-------Cch---hhhhHHHHHHHHhhHHHHHHHHHHHhhc--
Confidence 344443332 344577778889999999999999983 222 7888999999999999999988887777
Q ss_pred hcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhh
Q 005266 162 EISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVD 241 (705)
Q Consensus 162 ~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~ 241 (705)
++.++.+++.-+.++-.| .++++..--+. +-.+++- +++ +..-. .++
T Consensus 179 --~P~Y~KAl~RRA~A~E~l---g~~~eal~D~t-v~ci~~~--------F~n-----~s~~~--------------~~e 225 (606)
T KOG0547|consen 179 --NPDYVKALLRRASAHEQL---GKFDEALFDVT-VLCILEG--------FQN-----ASIEP--------------MAE 225 (606)
T ss_pred --CcHHHHHHHHHHHHHHhh---ccHHHHHHhhh-HHHHhhh--------ccc-----chhHH--------------HHH
Confidence 999999999999999888 66666544332 1123321 111 11000 011
Q ss_pred hh--HHHHHHHHHH--------HHHHHHHhhhhHHhhhhc-CCCCCChh-hhhHHHHHHHHHHHHHHhccCCCCCccccc
Q 005266 242 NL--DAAMKADKQK--------MQEIQQLSSELDALNQSL-SRPDLPSR-ERSALAGRQAKLQQRLRSLEDSSLTGKEFL 309 (705)
Q Consensus 242 ~l--~~~l~~~~qk--------~~~~q~l~~~l~~l~~~L-~~~~~~~~-~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l 309 (705)
|+ +.++++...| +|.-.=|...++....-+ ...+.++. .-..+...++-|....++.+....+.-..-
T Consensus 226 R~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~ 305 (606)
T KOG0547|consen 226 RVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEE 305 (606)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHH
Confidence 11 1111111111 222222222333332211 11222221 122233333333333222000000000000
Q ss_pred cccccCCcccccccccccCCCCcccccccch-hhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 005266 310 EPSYFGNARQAWGDKLVLAPSPMDGEWLPKS-AVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVR 388 (705)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~-~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~ 388 (705)
..+..- .+..+-.... .--+.+.++.+++..-+|+...|..-++++... .|-.+
T Consensus 306 ----------~~~~~~-----~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l----------~~~~~ 360 (606)
T KOG0547|consen 306 ----------CLGSES-----SLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL----------DPAFN 360 (606)
T ss_pred ----------hhhhhh-----hccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc----------Ccccc
Confidence 000000 0011111111 123778888999999999998888888888774 11110
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhh--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh
Q 005266 389 EVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ--EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 466 (705)
Q Consensus 389 e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~--~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~ 466 (705)
++ =|.++..|. +.. .+ ...-.++..|. ++..+.+++-.|++..-.+++++|.+-|++|.++.++.
T Consensus 361 --~l---yI~~a~~y~--d~~--~~----~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 361 --SL---YIKRAAAYA--DEN--QS----EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred --hH---HHHHHHHHh--hhh--cc----HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh
Confidence 10 233222221 211 01 11122444443 44779999999999999999999999999999998874
Q ss_pred hHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 005266 467 SMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 542 (705)
Q Consensus 467 ~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~l 542 (705)
. .+...++...-+++..++ ++.+.. +||.- +.+|...|.++.-+++++.|...+..|+.+
T Consensus 428 ~---~~~iQl~~a~Yr~~k~~~~m~~Fee~kk------kFP~~-------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 428 A---YAYIQLCCALYRQHKIAESMKTFEEAKK------KFPNC-------PEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCC-------chHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 3 233444444444454444 444444 67762 558888899999999999999999999999
Q ss_pred HHhcc----cCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHH
Q 005266 543 AHNHM----GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDE 618 (705)
Q Consensus 543 a~~e~----gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~ 618 (705)
..++. |-.-++..++..+-|. +|..+|.+.+++|+.+ .. ..-.+...||.+--..|+.++|.|.|+
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk----~d~~~a~~Ll~KA~e~----Dp--kce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWK----EDINQAENLLRKAIEL----DP--KCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred ccccccccccchhhhhhhHhhhchh----hhHHHHHHHHHHHHcc----Cc--hHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 64321 3444555555555544 7888888888888765 22 233456678999999999999999998
Q ss_pred HHHHHHH
Q 005266 619 YRRKKLD 625 (705)
Q Consensus 619 ~~~~~~~ 625 (705)
-......
T Consensus 562 ksa~lAr 568 (606)
T KOG0547|consen 562 KSAQLAR 568 (606)
T ss_pred HHHHHHH
Confidence 7665554
No 39
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.78 E-value=4.9e-05 Score=82.44 Aligned_cols=152 Identities=14% Similarity=-0.062 Sum_probs=98.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHH--HHHHHHHHHhhCChhh---HHHHHHhhccccccCCccchhhhH
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC--HAYAAVSYFCIGDAES---SSQAIDLIGPVYQMKDTINGVREE 512 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a--~~nlalv~l~~gd~d~---~~~ALeli~~~~~~~~~~~g~~~q 512 (705)
.+|.++...|++++|...|.++....+........ ...+...+...|..+. .+.+.+...+ .+++.. .
T Consensus 191 ~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~--~~~~~~--~--- 263 (355)
T cd05804 191 HLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW--HFPDHG--L--- 263 (355)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh--hcCccc--c---
Confidence 45777888888888888888876543321111111 1122222222343322 2222222222 112211 1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNH---MGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e---~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
...-...+.++...|+.++|...+......+ .. .+............+.+++..|+.++|.+.+.+|+.++..+|.
T Consensus 264 ~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~gg 342 (355)
T cd05804 264 AFNDLHAALALAGAGDKDALDKLLAALKGRA-SSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGG 342 (355)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 1122346777888999999999999888887 34 4455567778899999999999999999999999999999999
Q ss_pred hhhHHHHH
Q 005266 590 IPTQIWAL 597 (705)
Q Consensus 590 ~~~q~~al 597 (705)
-+.|-.+.
T Consensus 343 s~aq~~~~ 350 (355)
T cd05804 343 SHAQRDVF 350 (355)
T ss_pred cHHHHHHH
Confidence 88877654
No 40
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.77 E-value=8.6e-07 Score=96.11 Aligned_cols=206 Identities=12% Similarity=0.041 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 005266 342 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 421 (705)
Q Consensus 342 ~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~ 421 (705)
.|+++|+..+.++...|..+.+.+.+.+..+. .+.+ .
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~---------~----------------------------- 40 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQA-----LAAR---------A----------------------------- 40 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-----hccC---------C-----------------------------
Confidence 37889999999988888887775555544442 0000 0
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChh----hHHHHHHhhc
Q 005266 422 SGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE----SSSQAIDLIG 497 (705)
Q Consensus 422 ~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d----~~~~ALeli~ 497 (705)
......++.|..+...|++++|...+++++...++.. .+..+ +..+...|++. ...++++...
T Consensus 41 ---------~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (355)
T cd05804 41 ---------TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL---LALKL-HLGAFGLGDFSGMRDHVARVLPLWA 107 (355)
T ss_pred ---------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---HHHHH-hHHHHHhcccccCchhHHHHHhccC
Confidence 0111223567888899999999999999999877644 11111 44444444433 3555555322
Q ss_pred cccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHH
Q 005266 498 PVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREIL 577 (705)
Q Consensus 498 ~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~ 577 (705)
+ ..|+ ...++..+|.++..+|++++|...+++++++. .. + +.++..+|+++...|+.++|...+
T Consensus 108 ~--~~~~-------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~--~----~~~~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 108 P--ENPD-------YWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PD--D----AWAVHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred c--CCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC--C----cHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2 2232 25577788999999999999999999999985 22 2 457888999999999999999999
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005266 578 RSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 578 ~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
++++.+.....+. .......++.++...|++++|.+.++...
T Consensus 172 ~~~l~~~~~~~~~--~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 172 ESWRDTWDCSSML--RGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HhhhhccCCCcch--hHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999876653332 23344568899999999999999888763
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=98.75 E-value=2.9e-06 Score=98.60 Aligned_cols=161 Identities=13% Similarity=0.048 Sum_probs=120.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhcccc
Q 005266 425 VEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVY 500 (705)
Q Consensus 425 ~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~ 500 (705)
..+.+|..+.++..+|.++...|++++|+.+|++|+++.++.. .+..++|.++...|++++ +++|++
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~G~~~eAi~~~~~Al~------ 400 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA---DIKYYYGWNLFMAGQLEEALQTINECLK------ 400 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHh------
Confidence 3445567789999999999999999999999999999988754 357888999999999887 566666
Q ss_pred ccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 005266 501 QMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSS 580 (705)
Q Consensus 501 ~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~A 580 (705)
..|++ ..+++..+.+++..|++++|...+++++.... .++ ..++..+|.++..+|+.++|...+.+.
T Consensus 401 l~P~~-------~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~--p~~----~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 401 LDPTR-------AAAGITKLWITYYHTGIDDAIRLGDELRSQHL--QDN----PILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred cCCCC-------hhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc--ccC----HHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 23432 22344556667789999999999999876631 223 336788999999999999999998765
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHH
Q 005266 581 LTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEME 615 (705)
Q Consensus 581 l~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e 615 (705)
... .+....+...|+..|...|+ +|..
T Consensus 468 ~~~------~~~~~~~~~~l~~~~~~~g~--~a~~ 494 (553)
T PRK12370 468 STQ------EITGLIAVNLLYAEYCQNSE--RALP 494 (553)
T ss_pred hhc------cchhHHHHHHHHHHHhccHH--HHHH
Confidence 322 22345556778888888885 4444
No 42
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=1.1e-06 Score=89.99 Aligned_cols=174 Identities=14% Similarity=0.054 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
..+..++.+|..+...|++++|...|+++++..++......+..++|.++...|++++ +.++++ .+|++.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~------~~p~~~ 104 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR------LHPNHP 104 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------HCcCCC
Confidence 4577889999999999999999999999999988766556678899999999999777 444443 334432
Q ss_pred chhhhHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHHHHhcccCHHHHH------------HHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQ--------QDFQEARNRLAKGLQIAHNHMGNLQLVS------------QYLTILGNLALA 566 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~--------g~~~eA~~~L~eAL~la~~e~gn~~l~a------------~aL~~LG~i~~~ 566 (705)
. ...+++.+|.+++.. |++++|.+.+.++++.. ..... ...+ .....+|.+|+.
T Consensus 105 ~----~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 178 (235)
T TIGR03302 105 D----ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEY-APDAKKRMDYLRNRLAGKELYVARFYLK 178 (235)
T ss_pred c----hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 134788999999876 88999999999998774 21111 1111 122468999999
Q ss_pred CCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 005266 567 LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEY 619 (705)
Q Consensus 567 lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~ 619 (705)
.|++.+|...++.++...... +....++..+|.+|...|++++|.++++.
T Consensus 179 ~g~~~~A~~~~~~al~~~p~~---~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 179 RGAYVAAINRFETVVENYPDT---PATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred cCChHHHHHHHHHHHHHCCCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999988664333 33467778899999999999999985543
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.73 E-value=2.3e-06 Score=91.63 Aligned_cols=164 Identities=12% Similarity=0.051 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
..+.+++.+|.++...|++++|...|.+|+++.++.. .+..|+|.++...|++++ +.++++ ..|++.
T Consensus 96 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~~eA~~~~~~al~------~~P~~~ 166 (296)
T PRK11189 96 DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAYLNRGIALYYGGRYELAQDDLLAFYQ------DDPNDP 166 (296)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCCCCH
Confidence 4455666666666666666666666666666655432 235555666655555544 333333 223321
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHH--HHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQ--AREILRSSLTLA 584 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~q--A~~~~~~Al~LA 584 (705)
. + ..|..+ ....+++++|+..+.++.... ++.. . ..+.+++.+|+..+ +.+.+..++..+
T Consensus 167 ~----~-~~~~~l---~~~~~~~~~A~~~l~~~~~~~-----~~~~----~-~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 228 (296)
T PRK11189 167 Y----R-ALWLYL---AESKLDPKQAKENLKQRYEKL-----DKEQ----W-GWNIVEFYLGKISEETLMERLKAGATDN 228 (296)
T ss_pred H----H-HHHHHH---HHccCCHHHHHHHHHHHHhhC-----Cccc----c-HHHHHHHHccCCCHHHHHHHHHhcCCCc
Confidence 1 0 111111 223455666666665543221 1110 0 01233333444422 222222222222
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 585 KKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 585 rk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
.+++.. ...++..||.++...|++++|..+|..+.+.
T Consensus 229 ~~l~~~--~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 229 TELAER--LCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 222222 2456778999999999999999988777643
No 44
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.73 E-value=4.9e-07 Score=91.27 Aligned_cols=161 Identities=23% Similarity=0.183 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccch
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTING 508 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g 508 (705)
+.+..-||.-++..|++..|..-+++|++.+++.. .+..-+|.+|...|+.+. +++|+. ..|+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~---~a~~~~A~~Yq~~Ge~~~A~e~YrkAls------l~p~---- 101 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY---LAHLVRAHYYQKLGENDLADESYRKALS------LAPN---- 101 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHcCChhhHHHHHHHHHh------cCCC----
Confidence 34445577777777777777777777777777644 224444555666666543 666666 2233
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcC
Q 005266 509 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 588 (705)
Q Consensus 509 ~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~g 588 (705)
.+.++++.|.-++.+|+|++|..+|++|+..= ..+. .+.++..+|.+.++.|+..+|++++++++.+-...
T Consensus 102 ---~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P--~Y~~---~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~- 172 (250)
T COG3063 102 ---NGDVLNNYGAFLCAQGRPEEAMQQFERALADP--AYGE---PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF- 172 (250)
T ss_pred ---ccchhhhhhHHHHhCCChHHHHHHHHHHHhCC--CCCC---cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC-
Confidence 25577777777777777777777777776552 1333 34567777777777777777777777777653322
Q ss_pred ChhhHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 005266 589 DIPTQIWALSVLTALYQQLGDRGNEMENDEYR 620 (705)
Q Consensus 589 D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 620 (705)
.-+...+.+.+-..||+..|+-.++.+
T Consensus 173 -----~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 173 -----PPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred -----ChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 234445666777777777776644443
No 45
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.73 E-value=1.3e-06 Score=88.25 Aligned_cols=196 Identities=17% Similarity=0.191 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 005266 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (705)
Q Consensus 343 ~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~ 422 (705)
-+-+++=.+.-|...|++..|.+-+++|+++ +|+.
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~----------DPs~----------------------------------- 68 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEH----------DPSY----------------------------------- 68 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------Cccc-----------------------------------
Confidence 3455666778888888888888888888886 3331
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhcc
Q 005266 423 GFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGP 498 (705)
Q Consensus 423 ~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~ 498 (705)
..+|.+++.|++..|..+.|.+.|++|+++.+++ +.++.|-|.-....|.|++ +++|++ .|
T Consensus 69 ----------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~---GdVLNNYG~FLC~qg~~~eA~q~F~~Al~--~P 133 (250)
T COG3063 69 ----------YLAHLVRAHYYQKLGENDLADESYRKALSLAPNN---GDVLNNYGAFLCAQGRPEEAMQQFERALA--DP 133 (250)
T ss_pred ----------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc---cchhhhhhHHHHhCCChHHHHHHHHHHHh--CC
Confidence 1234478999999999999999999999997653 2346777665555788877 788776 44
Q ss_pred ccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Q 005266 499 VYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILR 578 (705)
Q Consensus 499 ~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~ 578 (705)
.|.. .+..|-++|++.++.|+++.|..+|+++|++- ... . -++..|...+...|++.+|+-.++
T Consensus 134 ~Y~~---------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~-~-----~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 134 AYGE---------PSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQF-P-----PALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred CCCC---------cchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCC-C-----hHHHHHHHHHHhcccchHHHHHHH
Confidence 4332 35689999999999999999999999999994 322 2 256678899999999999998887
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 005266 579 SSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 620 (705)
Q Consensus 579 ~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 620 (705)
.-..- . ..++.++...-++-+..||.+.|.++....
T Consensus 198 ~~~~~---~---~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 198 RYQQR---G---GAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHhc---c---cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 64321 1 246777777788999999998887755443
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=1.1e-07 Score=107.64 Aligned_cols=191 Identities=11% Similarity=0.086 Sum_probs=125.8
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhh
Q 005266 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (705)
Q Consensus 351 ~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~ 430 (705)
+..|--.+++++|+++++..-+. .. - -+..+++-.-.+|+ |+- ...... ++.-..-..+
T Consensus 360 GrayFEl~~Y~~a~~~F~~~r~~-----~p-~---rv~~meiyST~LWH------Lq~----~v~Ls~--Laq~Li~~~~ 418 (638)
T KOG1126|consen 360 GRAYFELIEYDQAERIFSLVRRI-----EP-Y---RVKGMEIYSTTLWH------LQD----EVALSY--LAQDLIDTDP 418 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-----cc-c---cccchhHHHHHHHH------HHh----hHHHHH--HHHHHHhhCC
Confidence 44555556667777777766553 11 1 11222332235552 222 111111 3344445556
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCCh----hhHHHHHHhhccccc-cCCc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA----ESSSQAIDLIGPVYQ-MKDT 505 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~----d~~~~ALeli~~~~~-~~~~ 505 (705)
..|..-..+|-.+--+++++.|+.+|++|+.+++... -.|-..|.. ++++.|..-++..-. .|.
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa----------YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA----------YAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc----------hhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 7788999999999999999999999999999987633 122223431 235555555554311 122
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LAr 585 (705)
. =.+||.+|.+|+++++++.|.-++++|+.+ | -.|..+. ..+|.+++++|+.++|..+++.|+.+=.
T Consensus 488 -h-----YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-N--P~nsvi~----~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 488 -H-----YNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-N--PSNSVIL----CHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred -h-----hHHHHhhhhheeccchhhHHHHHHHhhhcC-C--ccchhHH----hhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 1 348999999999999999999999999888 3 3454444 4689999999999999999999988754
Q ss_pred H
Q 005266 586 K 586 (705)
Q Consensus 586 k 586 (705)
+
T Consensus 555 k 555 (638)
T KOG1126|consen 555 K 555 (638)
T ss_pred C
Confidence 4
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=0.00014 Score=79.89 Aligned_cols=193 Identities=13% Similarity=0.094 Sum_probs=142.4
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhh
Q 005266 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (705)
Q Consensus 351 ~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~ 430 (705)
+.+|.-+++.+||..|++.|++. .|+ ....|
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkL----------Np~-------~~~aW-------------------------------- 367 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKL----------NPK-------YLSAW-------------------------------- 367 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhc----------Ccc-------hhHHH--------------------------------
Confidence 35666678889999999999995 111 12455
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
++.|+=++-+.+...|...|++|+++.+... .+-..+|..|-..+.+-. +.+|++ -.|.|
T Consensus 368 ------TLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy---RAWYGLGQaYeim~Mh~YaLyYfqkA~~------~kPnD- 431 (559)
T KOG1155|consen 368 ------TLMGHEYVEMKNTHAAIESYRRAVDINPRDY---RAWYGLGQAYEIMKMHFYALYYFQKALE------LKPND- 431 (559)
T ss_pred ------HHhhHHHHHhcccHHHHHHHHHHHhcCchhH---HHHhhhhHHHHHhcchHHHHHHHHHHHh------cCCCc-
Confidence 2668888888888888888888888876533 224455666666555443 566666 22454
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH--
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA-- 584 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA-- 584 (705)
...|..+|.+|...++.++|+.++..|+.... .++.+|..||..|-.+++..+|..+|+.-+...
T Consensus 432 ------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~ 498 (559)
T KOG1155|consen 432 ------SRLWVALGECYEKLNRLEEAIKCYKRAILLGD-------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL 498 (559)
T ss_pred ------hHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34799999999999999999999999977742 255699999999999999999999999988744
Q ss_pred -HHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 585 -KKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 585 -rk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
...+|.. ..+..-|+.-+...++.++|..+.......
T Consensus 499 eg~~~~~t--~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 499 EGEIDDET--IKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred hcccchHH--HHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 3344432 334444899999999999999876665554
No 48
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.65 E-value=0.0005 Score=85.29 Aligned_cols=132 Identities=12% Similarity=-0.044 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHH
Q 005266 434 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA 513 (705)
Q Consensus 434 ~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA 513 (705)
..+..+...+...|++++|...|....+..-.+. ..+...+...|...|+.+++.+..+.+...+..|+ .
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--------v 719 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG--TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT--------V 719 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--------H
Confidence 4555666667777777777777776554321111 12344444455555665443333332222222233 3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSL 581 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al 581 (705)
..|..+...+.+.|++++|.+.+++-.... -.-| ..++..|-..+...|+.++|.+.+....
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~G--i~Pd----~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLG--LCPN----TITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456666666777777777777777543221 0111 2344455566777777777776666653
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.64 E-value=7.4e-05 Score=83.58 Aligned_cols=124 Identities=6% Similarity=-0.032 Sum_probs=95.5
Q ss_pred HHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHH
Q 005266 54 LLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFN 133 (705)
Q Consensus 54 L~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~ 133 (705)
+-...+|++.|+.++.++....+.-. -.+-+.|+.+++.|+...+..++.++.+..+ .+.. ...
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~~~-------~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p-------~~~l--~~~ 156 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAEPV-------LNLIKAAEAAQQRGDEARANQHLEEAAELAG-------NDNI--LVE 156 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------cCch--HHH
Confidence 34456899999999999877654432 3344568999999999999999999987666 2221 145
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHH
Q 005266 134 SQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRV 200 (705)
Q Consensus 134 ~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~ 200 (705)
...|.++..+|++..|.+.++...+. ++....++..++.+++.. .+.+++.+.+.+..+.
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~----~P~~~~~l~ll~~~~~~~---~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEM----APRHKEVLKLAEEAYIRS---GAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHc
Confidence 55699999999999999999998876 777888999999999888 6667777776666544
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.64 E-value=2.2e-07 Score=98.08 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=80.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHH
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHF 517 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~ 517 (705)
.+|.++...|+.++|+..|++|+++.++... +...++.+++..|++++...+++.+.... |++ ...+.
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~-------~~~~~ 218 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKALELDPDDPD---ARNALAWLLIDMGDYDEAREALKRLLKAA--PDD-------PDLWD 218 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---HHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTS-------CCHCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCH-------HHHHH
Confidence 6789999999999999999999999987441 34455666777788877666666555431 222 22677
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 005266 518 AYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 518 ~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LAr 585 (705)
.+|.+++..|++++|+.+++++++.. -.|+ ..+..+|+++...|+.++|.+++++++..-+
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~---p~d~----~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLN---PDDP----LWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHS---TT-H----HHHHHHHHHHT--------------------
T ss_pred HHHHHhcccccccccccccccccccc---cccc----ccccccccccccccccccccccccccccccC
Confidence 88999999999999999999998863 3453 3667899999999999999999999987644
No 51
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=0.0002 Score=80.08 Aligned_cols=428 Identities=15% Similarity=0.087 Sum_probs=219.8
Q ss_pred HhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHH
Q 005266 56 KHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQ 135 (705)
Q Consensus 56 e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~ 135 (705)
...++++.|..++..|..|.++++ -.++-=+-+|...|++..+..=..|++++.+ .|.= =++.
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nh-------vlySnrsaa~a~~~~~~~al~da~k~~~l~p---------~w~k-gy~r 75 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNH-------VLYSNRSAAYASLGSYEKALKDATKTRRLNP---------DWAK-GYSR 75 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCcc-------chhcchHHHHHHHhhHHHHHHHHHHHHhcCC---------chhh-HHHH
Confidence 456899999999999999999987 3344446688888888888887888899887 3422 2356
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccc
Q 005266 136 LANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGL 215 (705)
Q Consensus 136 lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~ 215 (705)
++..+.-.|||..|+..|.+|... .+.+-....-|.+.+.-. +. ..+ .++|-
T Consensus 76 ~Gaa~~~lg~~~eA~~ay~~GL~~----d~~n~~L~~gl~~a~~~~-----~~--------~~~-----------~~~~p 127 (539)
T KOG0548|consen 76 KGAALFGLGDYEEAILAYSEGLEK----DPSNKQLKTGLAQAYLED-----YA--------ADQ-----------LFTKP 127 (539)
T ss_pred hHHHHHhcccHHHHHHHHHHHhhc----CCchHHHHHhHHHhhhHH-----HH--------hhh-----------hccCc
Confidence 788889999999999999999986 555666665566655111 10 011 11111
Q ss_pred hhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHH
Q 005266 216 LFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRL 295 (705)
Q Consensus 216 ~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i 295 (705)
.++.-. +..-+. +.---++|.... +..||+.-.. |..||. |. + +.+.+.+|
T Consensus 128 ~~~~~l--------~~~p~t---~~~~~~~~~~~~---l~~~~~~p~~---l~~~l~--d~--r----~m~a~~~l---- 178 (539)
T KOG0548|consen 128 YFHEKL--------ANLPLT---NYSLSDPAYVKI---LEIIQKNPTS---LKLYLN--DP--R----LMKADGQL---- 178 (539)
T ss_pred HHHHHh--------hcChhh---hhhhccHHHHHH---HHHhhcCcHh---hhcccc--cH--H----HHHHHHHH----
Confidence 111100 000000 000124444322 2223322111 222332 11 1 11111111
Q ss_pred HhccCCCC--CccccccccccCCcccccccccccCCCCcc-cccccchh------hHHHHHHHHHHHhcCCCChHHHHHH
Q 005266 296 RSLEDSSL--TGKEFLEPSYFGNARQAWGDKLVLAPSPMD-GEWLPKSA------VYALVDLMVVILGRPKGLFKECMQR 366 (705)
Q Consensus 296 ~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~WLpk~~------~~aL~yll~~~~~~~~g~~~ka~k~ 366 (705)
..+....+ .+.+++.+. .+ +. .++.. |.-+.+.. ..+.-+-=.+-..-.+-+|..+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~----------~~-p~-~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 179 KGVDELLFYASGIEILASM----------AE-PC-KQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred hcCccccccccccccCCCC----------CC-cc-cccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 11000000 001111000 00 00 00011 22221111 2233333333444455677788888
Q ss_pred HHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHH-HHhHHHHHh----hhhhhhHHhhhhhHHHHHHHHHH
Q 005266 367 IQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQ-FLENKVAVE----LTRSGFVEAQEACESMIEMLRGQ 441 (705)
Q Consensus 367 l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~-~Le~~~~~~----L~~~~~~~a~~~~~a~~~~llG~ 441 (705)
+..+++.- +.+..+ .. .+-+|. .+. .+++.-.|. -.+..|... + .-+.....+|.
T Consensus 247 y~~a~el~-~~it~~--------------~n-~aA~~~--e~~~~~~c~~~c~~a~E~gre~rad~-k-lIak~~~r~g~ 306 (539)
T KOG0548|consen 247 YAKALELA-TDITYL--------------NN-IAAVYL--ERGKYAECIELCEKAVEVGRELRADY-K-LIAKALARLGN 306 (539)
T ss_pred HHHHHhHh-hhhHHH--------------HH-HHHHHH--hccHHHHhhcchHHHHHHhHHHHHHH-H-HHHHHHHHhhh
Confidence 88888751 111000 00 011111 000 011111111 000000000 0 12444455899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhcc-ccccCCccchhhhHHHHHHHHH
Q 005266 442 YAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGP-VYQMKDTINGVREEASLHFAYG 520 (705)
Q Consensus 442 ~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~-~~~~~~~~~g~~~qA~al~~lG 520 (705)
.+..+++++.|...|++|+.-.+.+. .++ .....++++..-.. .+-.|. .|.-....|
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~-----~ls---------~lk~~Ek~~k~~e~~a~~~pe-------~A~e~r~kG 365 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPD-----LLS---------KLKEAEKALKEAERKAYINPE-------KAEEEREKG 365 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHH-----HHH---------HHHHHHHHHHHHHHHHhhChh-------HHHHHHHHH
Confidence 99999999999999999887655422 000 00112222221111 111122 244556668
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 005266 521 LLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVL 600 (705)
Q Consensus 521 ~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L 600 (705)
..+|..|+|.+|..+|.+|++.. -.|. ..+..-+-.|..+|++..|.+.++.+..+ .-....+|.--
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~---P~Da----~lYsNRAac~~kL~~~~~aL~Da~~~ieL----~p~~~kgy~RK-- 432 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRD---PEDA----RLYSNRAACYLKLGEYPEALKDAKKCIEL----DPNFIKAYLRK-- 432 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcC---Cchh----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc----CchHHHHHHHH--
Confidence 88889999999999999987773 2333 35667888888888888888888888777 22223333322
Q ss_pred HHHHHHcCCchHHHHHHHHHHHH
Q 005266 601 TALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 601 ~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
|.++..+.++++|++.|+.+.+.
T Consensus 433 g~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 66778888888888888776654
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=98.62 E-value=1.4e-06 Score=101.22 Aligned_cols=166 Identities=11% Similarity=-0.011 Sum_probs=124.9
Q ss_pred hhhhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHH
Q 005266 428 QEACESMIEMLRGQYAHSV---------GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAID 494 (705)
Q Consensus 428 ~~~~~a~~~~llG~~~~~~---------g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALe 494 (705)
.+|..+.++..+|.++... +++++|..++++|+++.++.. .+...+|.++...|++++ +++|++
T Consensus 290 ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~---~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 290 MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP---QALGLLGLINTIHSEYIVGSLLFKQANL 366 (553)
T ss_pred cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4455677777888766543 448999999999999988743 346677888888899877 677777
Q ss_pred hhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHH
Q 005266 495 LIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAR 574 (705)
Q Consensus 495 li~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~ 574 (705)
..|++ +.+++.+|.++...|++++|...+++++++. - .++. +...++.+++..|++++|.
T Consensus 367 ------l~P~~-------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P--~~~~----~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 367 ------LSPIS-------ADIKYYYGWNLFMAGQLEEALQTINECLKLD-P--TRAA----AGITKLWITYYHTGIDDAI 426 (553)
T ss_pred ------hCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C--CChh----hHHHHHHHHHhccCHHHHH
Confidence 34442 5689999999999999999999999999884 2 2321 2334566788889999999
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005266 575 EILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 575 ~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
+.+++++... -++ ...++..||.+|...|+.++|.+.+....
T Consensus 427 ~~~~~~l~~~--~p~---~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 427 RLGDELRSQH--LQD---NPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHHHHHHhc--ccc---CHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 9988875332 122 24456778999999999999999876543
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=7.1e-06 Score=89.07 Aligned_cols=159 Identities=23% Similarity=0.199 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhH
Q 005266 434 MIEMLRGQYAHS-VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 512 (705)
Q Consensus 434 ~~~~llG~~~~~-~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~q 512 (705)
.+.++-..+++. -.++..|..+-..|+.+++-+ +.++.|-+.+-...||++. |++.+++.-+ +|..+
T Consensus 456 aa~nl~~l~flqggk~~~~aqqyad~aln~dryn---~~a~~nkgn~~f~ngd~dk---a~~~ykeal~--ndasc---- 523 (840)
T KOG2003|consen 456 AANNLCALRFLQGGKDFADAQQYADIALNIDRYN---AAALTNKGNIAFANGDLDK---AAEFYKEALN--NDASC---- 523 (840)
T ss_pred HhhhhHHHHHHhcccchhHHHHHHHHHhcccccC---HHHhhcCCceeeecCcHHH---HHHHHHHHHc--CchHH----
Confidence 333333444433 335666666666666654432 2345555444444466544 2222222211 22222
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
..++|++|+.+-.+|+.++|+.++-+--.+- .| -+++|+.++.||-.+.+..||.+.+.++..+ ++.
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~il----~n---n~evl~qianiye~led~aqaie~~~q~~sl------ip~ 590 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAIL----LN---NAEVLVQIANIYELLEDPAQAIELLMQANSL------IPN 590 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHHH----Hh---hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc------CCC
Confidence 2478999999999999999999887543332 12 3568888999999999999999998888655 222
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHH
Q 005266 593 QIWALSVLTALYQQLGDRGNEMEND 617 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~A~e~~ 617 (705)
---++.-|+++|..-||..+|..+|
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhh
Confidence 3345677888888888887776543
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.00018 Score=79.48 Aligned_cols=432 Identities=16% Similarity=0.095 Sum_probs=235.4
Q ss_pred HHHHHHHHH------HHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhcccc
Q 005266 46 TRLRISTLL------LKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSA 119 (705)
Q Consensus 46 ~rLrla~iL------~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~ 119 (705)
-|+.||.-| |.-.++|++|...+.+|..+.+.-|.| ++-.|-||...|++....+--.||+++.+.
T Consensus 110 ~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF-------YsNraAcY~~lgd~~~Vied~TkALEl~P~- 181 (606)
T KOG0547|consen 110 ERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF-------YSNRAACYESLGDWEKVIEDCTKALELNPD- 181 (606)
T ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh-------hhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-
Confidence 357777776 455678999999999999998887744 466788999999999999999999999983
Q ss_pred ccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCC-chHH-----HHHHHHHHHH--HhcccCChhHHH
Q 005266 120 SQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISY-PDLQ-----MFFATAILHV--HLMQWDDENSVL 191 (705)
Q Consensus 120 ~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~-~~~~-----~~~~La~~~~--~L~~~~~~~~v~ 191 (705)
+.+ -++.+|.+|-.-|++..|..=+-...= ..... ..+. ++-..++--. .+. .+-.-+.
T Consensus 182 -----Y~K----Al~RRA~A~E~lg~~~eal~D~tv~ci--~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k--~nr~p~l 248 (606)
T KOG0547|consen 182 -----YVK----ALLRRASAHEQLGKFDEALFDVTVLCI--LEGFQNASIEPMAERVLKKQAMKKAKEKLK--ENRPPVL 248 (606)
T ss_pred -----HHH----HHHHHHHHHHhhccHHHHHHhhhHHHH--hhhcccchhHHHHHHHHHHHHHHHHHHhhc--ccCCCCC
Confidence 223 466789999999988866543322111 00011 1121 2211221110 110 1112233
Q ss_pred HHHHHhHHHhhhcCccccccc--ccchhhhhHHHHHH-HHhhh---hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhH
Q 005266 192 RSINQCDRVWESIDPNRRGQC--LGLLFYNELLHIFY-RLRIC---DYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELD 265 (705)
Q Consensus 192 ~al~~~~~~~~~~~~~~~~~~--~G~~~~~E~l~v~~-~L~vc---~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~ 265 (705)
.+-..+.+.+.++.++..-.. .+-.-+ +.+.-++ .|-+. .|+.+-+ .++.. . .
T Consensus 249 PS~~fi~syf~sF~~~~~~~~~~~~~ksD-a~l~~~l~~l~~~~~e~Y~~a~~-------~~te~---------~----~ 307 (606)
T KOG0547|consen 249 PSATFIASYFGSFHADPKPLFDNKSDKSD-AALAEALEALEKGLEEGYLKAYD-------KATEE---------C----L 307 (606)
T ss_pred CcHHHHHHHHhhccccccccccCCCccch-hhHHHHHHHHHhhCchhHHHHHH-------HHHHH---------h----h
Confidence 344455555555533221110 000000 1111111 12222 1333221 11100 0 0
Q ss_pred HhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCc--ccccccccccCCCCcccccccchhhH
Q 005266 266 ALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNA--RQAWGDKLVLAPSPMDGEWLPKSAVY 343 (705)
Q Consensus 266 ~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~WLpk~~~~ 343 (705)
.-..+++-+.+ . .+++...... .+++.-- .+.|+. ...+=++ .++-=|. +
T Consensus 308 ~~~~~~~~n~~--------d---~~le~~A~al---~~~gtF~---fL~g~~~~a~~d~~~--------~I~l~~~---~ 359 (606)
T KOG0547|consen 308 GSESSLSVNEI--------D---AELEYMAEAL---LLRGTFH---FLKGDSLGAQEDFDA--------AIKLDPA---F 359 (606)
T ss_pred hhhhhcccccc--------c---hhHHHHHHHH---HHhhhhh---hhcCCchhhhhhHHH--------HHhcCcc---c
Confidence 00001111111 0 1111111110 0111000 000000 0000000 0111111 1
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccch-hhhHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 005266 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDL-QHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (705)
Q Consensus 344 aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l-~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~ 422 (705)
+-.|.-.+..|.+.++..+..+++++|.+. .|. ..+. .|+... .+ +|++..-. .+
T Consensus 360 ~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l----------dp~--n~dvYyHRgQm--------~f-lL~q~e~A---~a 415 (606)
T KOG0547|consen 360 NSLYIKRAAAYADENQSEKMWKDFNKAEDL----------DPE--NPDVYYHRGQM--------RF-LLQQYEEA---IA 415 (606)
T ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHHhc----------CCC--CCchhHhHHHH--------HH-HHHHHHHH---HH
Confidence 111777788899999999999999999884 222 2222 222222 11 12222222 45
Q ss_pred hhHHhhh--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHhhCChhh----HHHHHHh
Q 005266 423 GFVEAQE--ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHAYAAVSYFCIGDAES----SSQAIDL 495 (705)
Q Consensus 423 ~~~~a~~--~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~-~~g~a~a~~nlalv~l~~gd~d~----~~~ALel 495 (705)
|+..++. |..+..+.-++-...++++++++...|+.+.+.+++ +. +..-.|-+...+++++. +..|++|
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E----vy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE----VYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch----HHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 6666554 466777778899999999999999999999999987 33 23333777777788766 7888885
Q ss_pred hccccccCCccchhhhHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHH
Q 005266 496 IGPVYQMKDTINGVREEASLHFAYGLLLM-RQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAR 574 (705)
Q Consensus 496 i~~~~~~~~~~~g~~~qA~al~~lG~~~~-~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~ 574 (705)
=... . .-.+| +.-+..-|+..+ .++++++|.+.|++|+.+- |+-+ +++..||.+-+.+|+.++|.
T Consensus 492 E~~~-~--~~~v~----~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D------pkce-~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 492 EPRE-H--LIIVN----AAPLVHKALLVLQWKEDINQAENLLRKAIELD------PKCE-QAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred cccc-c--ccccc----chhhhhhhHhhhchhhhHHHHHHHHHHHHccC------chHH-HHHHHHHHHHHHHhhHHHHH
Confidence 2221 0 00011 222333333333 3578999999999997773 2222 58999999999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 005266 575 EILRSSLTLAKKLYD 589 (705)
Q Consensus 575 ~~~~~Al~LArk~gD 589 (705)
++++.+..|||.-..
T Consensus 558 elFEksa~lArt~~E 572 (606)
T KOG0547|consen 558 ELFEKSAQLARTESE 572 (606)
T ss_pred HHHHHHHHHHHhHHH
Confidence 999999999987554
No 55
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.60 E-value=3.9e-07 Score=77.14 Aligned_cols=74 Identities=22% Similarity=0.230 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ-LVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 586 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~-l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk 586 (705)
.+.+++++|.++..+|++++|+.++++|+++. +..|+.. .++.++..||.+|..+|++++|.+++++|+++.+|
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 37799999999999999999999999999996 6788766 47999999999999999999999999999999875
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.54 E-value=0.00012 Score=81.73 Aligned_cols=129 Identities=17% Similarity=0.120 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH--hhCChhhHHHHHHhhccc-cccCCccc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF--CIGDAESSSQAIDLIGPV-YQMKDTIN 507 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l--~~gd~d~~~~ALeli~~~-~~~~~~~~ 507 (705)
..+.++..++..+...|+.++|.....++++...++. +..+|. ..++++. +++.++.. -.+|+|
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~--------l~~l~~~l~~~~~~~---al~~~e~~lk~~P~~-- 327 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER--------LVLLIPRLKTNNPEQ---LEKVLRQQIKQHGDT-- 327 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH--------HHHHHhhccCCChHH---HHHHHHHHHhhCCCC--
Confidence 5688899999999999999999999999998544432 222232 3355544 22222211 145664
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 005266 508 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 508 g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LAr 585 (705)
+..++.+|.+++..+++++|+++|+++++.. -.+ ..+..|+.++.+.|++++|.++|++++.++-
T Consensus 328 -----~~l~l~lgrl~~~~~~~~~A~~~le~al~~~---P~~-----~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 328 -----PLLWSTLGQLLMKHGEWQEASLAFRAALKQR---PDA-----YDYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 6689999999999999999999999998773 112 2456799999999999999999999998763
No 57
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.54 E-value=3.9e-06 Score=89.17 Aligned_cols=179 Identities=16% Similarity=0.028 Sum_probs=133.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc---CChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccch
Q 005266 436 EMLRGQYAHSVGCYSEAAFHYVEAAKIT---ESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTING 508 (705)
Q Consensus 436 ~~llG~~~~~~g~~~eA~~~f~~Al~l~---~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g 508 (705)
..--|..+...|++++|...|.+|.... ++....+.+..+.+.+|... +++. +.+|++++...++ ...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~----~~~ 112 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR----FSQ 112 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-----HHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc----HHH
Confidence 3456888889999999999999998774 44666777888888888764 7766 7888887766533 222
Q ss_pred hhhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc
Q 005266 509 VREEASLHFAYGLLLMRQ-QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 587 (705)
Q Consensus 509 ~~~qA~al~~lG~~~~~~-g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~ 587 (705)
-|.++..+|.++... |++++|..++++|+.+. +..+.+...+.++..+|.++..+|++++|.+.|++......+.
T Consensus 113 ---aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y-~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 113 ---AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELY-EQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp ---HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHH-HHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 267999999999998 99999999999999999 5688999999999999999999999999999999987654333
Q ss_pred CChhhHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 588 YDIPTQI-WALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 588 gD~~~q~-~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
+-....+ -.+...+-++...||+..|...++.+...
T Consensus 189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3222222 22233456888999999999988877643
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.54 E-value=2.1e-06 Score=91.31 Aligned_cols=142 Identities=17% Similarity=0.176 Sum_probs=119.0
Q ss_pred HHHHHHhhcccccc---CCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHH
Q 005266 489 SSQAIDLIGPVYQM---KDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG----NLQLVSQYLTILG 561 (705)
Q Consensus 489 ~~~ALeli~~~~~~---~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g----n~~l~a~aL~~LG 561 (705)
+.++|+.|+..++- .+|..-+ ..++..+|..+-+..+++.|.-+..+|..+.+ ..+ |.--.+.++..|+
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LE---lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~-s~~l~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLE---LQVCVSLGSLFAQLKDYEKALFFPCKAAELVN-SYGLKDWSLKYRAMSLYHMA 213 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceee---eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHH-hcCcCchhHHHHHHHHHHHH
Confidence 77888877766442 2333322 45888899999899999999999999998885 344 3345677888898
Q ss_pred HHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005266 562 NLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADA 634 (705)
Q Consensus 562 ~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a 634 (705)
-.+.-+|....|.++.++|..+|=..||+..+......++++|+..||.++|-..|+.++..+.+++++..+-
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv 286 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQV 286 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHH
Confidence 8888999999999999999999999999999999999999999999999999999999999999999886653
No 59
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.53 E-value=9.3e-05 Score=88.38 Aligned_cols=116 Identities=9% Similarity=-0.022 Sum_probs=77.6
Q ss_pred hcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHH
Q 005266 58 THNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLA 137 (705)
Q Consensus 58 T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA 137 (705)
.+++++|...|+.....- +. . .--.++..|...+.+.+....++++....+.... ..+.+.|+ .+.
T Consensus 100 ~g~~~~Al~~f~~m~~~~-~~---~-~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~------~~~~~~~n---~Li 165 (697)
T PLN03081 100 CGRHREALELFEILEAGC-PF---T-LPASTYDALVEACIALKSIRCVKAVYWHVESSGF------EPDQYMMN---RVL 165 (697)
T ss_pred CCCHHHHHHHHHHHHhcC-CC---C-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC------CcchHHHH---HHH
Confidence 467889998888643210 11 0 1124566778888889998888887777655433 13344333 345
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHh
Q 005266 138 NAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQC 197 (705)
Q Consensus 138 ~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~ 197 (705)
..|...|++..|.+.++... .+....+..+..++... .+++++...+.+.
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~-------~~~~~t~n~li~~~~~~---g~~~~A~~lf~~M 215 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP-------ERNLASWGTIIGGLVDA---GNYREAFALFREM 215 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC-------CCCeeeHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 88999999999999988753 35666777888888776 6777777666554
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.51 E-value=5.4e-05 Score=87.35 Aligned_cols=317 Identities=15% Similarity=0.129 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhh
Q 005266 63 HAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFII 142 (705)
Q Consensus 63 ~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~ 142 (705)
++...||+|+.+.+..| .+.|-||-.|-..+++..|+..++.++++.+ ++....| .+||-+...
T Consensus 462 kslqale~av~~d~~dp-------~~if~lalq~A~~R~l~sAl~~~~eaL~l~~----~~~~~~w-----hLLALvlSa 525 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPTDP-------LVIFYLALQYAEQRQLTSALDYAREALALNR----GDSAKAW-----HLLALVLSA 525 (799)
T ss_pred HHHHHHHHHHhcCCCCc-------hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC----CccHHHH-----HHHHHHHhh
Confidence 34455888888888888 7777788899999999999999999999866 2334567 457888999
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHH
Q 005266 143 EGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELL 222 (705)
Q Consensus 143 ~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l 222 (705)
++++..|+.+.+....-. +++..-++ ..+++.+ .++..+.+++.|..+++ -|....
T Consensus 526 ~kr~~~Al~vvd~al~E~---~~N~~l~~---~~~~i~~----~~~~~e~~l~t~~~~L~--------~we~~~------ 581 (799)
T KOG4162|consen 526 QKRLKEALDVVDAALEEF---GDNHVLMD---GKIHIEL----TFNDREEALDTCIHKLA--------LWEAEY------ 581 (799)
T ss_pred hhhhHHHHHHHHHHHHHh---hhhhhhch---hhhhhhh----hcccHHHHHHHHHHHHH--------HHHhhh------
Confidence 999999999888755432 44332222 2333333 26667777777777664 221000
Q ss_pred HHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCC
Q 005266 223 HIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSS 302 (705)
Q Consensus 223 ~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~ 302 (705)
.++..+. +... -++...|.+.. . +..|..+. ..+...-++.+...
T Consensus 582 -------------------~~q~~~~----~g~~-~~lk~~l~la~-~-q~~~a~s~----sr~ls~l~a~~~~~----- 626 (799)
T KOG4162|consen 582 -------------------GVQQTLD----EGKL-LRLKAGLHLAL-S-QPTDAIST----SRYLSSLVASQLKS----- 626 (799)
T ss_pred -------------------hHhhhhh----hhhh-hhhhcccccCc-c-cccccchh----hHHHHHHHHhhhhh-----
Confidence 0000000 0000 11111111100 0 11111111 11111222333333
Q ss_pred CCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 005266 303 LTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLG 382 (705)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~ 382 (705)
+.....| +...+..++ +=-|+.. -..++..+..+...|..+.+.-++.|+-.+.
T Consensus 627 ~~se~~L-----------p~s~~~~~~---~~~~~~~----~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-------- 680 (799)
T KOG4162|consen 627 AGSELKL-----------PSSTVLPGP---DSLWYLL----QKLWLLAADLFLLSGNDDEARSCLLEASKID-------- 680 (799)
T ss_pred ccccccc-----------CcccccCCC---CchHHHH----HHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------
Confidence 2210000 000001111 1113333 2233344455555555566655555554430
Q ss_pred CCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005266 383 ITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 462 (705)
Q Consensus 383 ~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l 462 (705)
+.-+...++.|..+...|.+.||...|..|+.+
T Consensus 681 -----------------------------------------------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 681 -----------------------------------------------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred -----------------------------------------------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 112334457899999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHhhCChhh------HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHH
Q 005266 463 TESKSMQAMCHAYAAVSYFCIGDAES------SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRL 536 (705)
Q Consensus 463 ~~~~~g~a~a~~nlalv~l~~gd~d~------~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L 536 (705)
+++.. .+...+|-++...|++.- +..|+. ++|. + ..+||.+|.+...+|+.++|-++|
T Consensus 714 dP~hv---~s~~Ala~~lle~G~~~la~~~~~L~dalr-~dp~--n----------~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 714 DPDHV---PSMTALAELLLELGSPRLAEKRSLLSDALR-LDPL--N----------HEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred CCCCc---HHHHHHHHHHHHhCCcchHHHHHHHHHHHh-hCCC--C----------HHHHHHHHHHHHHccchHHHHHHH
Confidence 88832 237778888888887432 455555 4442 1 248999999999999999999999
Q ss_pred HHHHHHH
Q 005266 537 AKGLQIA 543 (705)
Q Consensus 537 ~eAL~la 543 (705)
+-|+++.
T Consensus 778 ~aa~qLe 784 (799)
T KOG4162|consen 778 QAALQLE 784 (799)
T ss_pred HHHHhhc
Confidence 9999994
No 61
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=7.4e-06 Score=89.64 Aligned_cols=166 Identities=17% Similarity=0.130 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCC-h---hhHHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD-A---ESSSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd-~---d~~~~ALeli~~~~~~~~~~ 506 (705)
..+..-..+|-|+.-.++.+.|..+|++|+++.+... .+..-+|--|....+ . +++.+|++ +. |.|
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~---~aWTLmGHEyvEmKNt~AAi~sYRrAvd-i~-----p~D- 397 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL---SAWTLMGHEYVEMKNTHAAIESYRRAVD-IN-----PRD- 397 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh---HHHHHhhHHHHHhcccHHHHHHHHHHHh-cC-----chh-
Confidence 3455556899999999999999999999999988633 112222333333222 1 12778887 23 333
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 586 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk 586 (705)
=.+||.+|.+|--.+=+-=|+-++++|++. + -.|++ .+..||++|-.+++.++|.++|..|...
T Consensus 398 ------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--k-PnDsR----lw~aLG~CY~kl~~~~eAiKCykrai~~--- 461 (559)
T KOG1155|consen 398 ------YRAWYGLGQAYEIMKMHFYALYYFQKALEL--K-PNDSR----LWVALGECYEKLNRLEEAIKCYKRAILL--- 461 (559)
T ss_pred ------HHHHhhhhHHHHHhcchHHHHHHHHHHHhc--C-CCchH----HHHHHHHHHHHhccHHHHHHHHHHHHhc---
Confidence 238999999999999999999999999988 3 33433 5678999999999999999999999865
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 587 LYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 587 ~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
||. ...++..||++|...+|..+|.-+++.+.+..+
T Consensus 462 -~dt--e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~ 497 (559)
T KOG1155|consen 462 -GDT--EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE 497 (559)
T ss_pred -ccc--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 564 567888999999999999999999999888663
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.51 E-value=1.3e-05 Score=85.80 Aligned_cols=225 Identities=12% Similarity=0.027 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 005266 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (705)
Q Consensus 343 ~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~ 422 (705)
.+-.|+-.+..+...|..++|...++++++. .|.. -..|......+... .... -.+...
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----------~P~~-------~~a~~~lg~~~~~~---g~~~-~A~~~~ 121 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALAL----------RPDM-------ADAYNYLGIYLTQA---GNFD-AAYEAF 121 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------CCCC-------HHHHHHHHHHHHHC---CCHH-HHHHHH
Confidence 4566888899999999999999999999885 2221 12331111111010 0000 001111
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhcccccc
Q 005266 423 GFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQM 502 (705)
Q Consensus 423 ~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~ 502 (705)
+-....+|..+.++..+|.++...|++++|...|.+++++.++..-+ ..+..+ ....+++++....++..-+ ..
T Consensus 122 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~---~~~~~l-~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 122 DSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR---ALWLYL-AESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHH-HHccCCHHHHHHHHHHHHh--hC
Confidence 22222344567888999999999999999999999999998875411 222222 2234555552222211111 11
Q ss_pred CCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 005266 503 KDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 582 (705)
Q Consensus 503 ~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~ 582 (705)
+.+ .|. .+.+.+..|++.++ ..+..+.+..........-.+.++..||.++..+|++++|..+|+.|++
T Consensus 196 ~~~---------~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 196 DKE---------QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred Ccc---------ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111 122 35566677877655 3444444322110001122467999999999999999999999999985
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHc
Q 005266 583 LAKKLYDIPTQIWALSVLTALYQQL 607 (705)
Q Consensus 583 LArk~gD~~~q~~al~~L~~l~~~~ 607 (705)
+- ..|-....+++..|..+....
T Consensus 265 ~~--~~~~~e~~~~~~e~~~~~~~~ 287 (296)
T PRK11189 265 NN--VYNFVEHRYALLELALLGQDQ 287 (296)
T ss_pred hC--CchHHHHHHHHHHHHHHHhhh
Confidence 42 346666677777777775544
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.49 E-value=0.0003 Score=81.41 Aligned_cols=375 Identities=18% Similarity=0.148 Sum_probs=217.5
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHc----CCC-------hhHHHHHHHHHhh
Q 005266 47 RLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLV----GAI-------PPQKLILYKALDL 115 (705)
Q Consensus 47 rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~----~~~-------~~ak~~l~kai~~ 115 (705)
-|=.+++.++.-++++++...=.|+..+. ...+.+++=..+..+.=+|-.+ +.+ ..+.+.+++|++.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~--~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLL--GGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHh--hhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 34567889999999999999999988866 3345677778888877777653 222 2333456666666
Q ss_pred ccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHH
Q 005266 116 TSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSIN 195 (705)
Q Consensus 116 ~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~ 195 (705)
.+ +++ .-.|-+|--|..+++..+|....+...+.. +.....+.-.|+.+.-.. ..+.+++..++
T Consensus 474 d~-------~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~---~~~~~~~whLLALvlSa~---kr~~~Al~vvd 537 (799)
T KOG4162|consen 474 DP-------TDP---LVIFYLALQYAEQRQLTSALDYAREALALN---RGDSAKAWHLLALVLSAQ---KRLKEALDVVD 537 (799)
T ss_pred CC-------CCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHhhh---hhhHHHHHHHH
Confidence 65 333 245556777888999999999888877763 222334443344433222 55556665555
Q ss_pred HhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCC
Q 005266 196 QCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPD 275 (705)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~ 275 (705)
.+-.-+ |-+|..+..++---+ .-+++=+.||+|+ +| -.+|.-.
T Consensus 538 ~al~E~------------~~N~~l~~~~~~i~~------~~~~~e~~l~t~~----~~----L~~we~~----------- 580 (799)
T KOG4162|consen 538 AALEEF------------GDNHVLMDGKIHIEL------TFNDREEALDTCI----HK----LALWEAE----------- 580 (799)
T ss_pred HHHHHh------------hhhhhhchhhhhhhh------hcccHHHHHHHHH----HH----HHHHHhh-----------
Confidence 444333 332222222211111 1234455677776 33 2233221
Q ss_pred CChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhc
Q 005266 276 LPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGR 355 (705)
Q Consensus 276 ~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~ 355 (705)
...|+.+++ .. +... .++ . ..
T Consensus 581 -------------~~~q~~~~~-----g~----~~~l---------k~~---------------------------l-~l 601 (799)
T KOG4162|consen 581 -------------YGVQQTLDE-----GK----LLRL---------KAG---------------------------L-HL 601 (799)
T ss_pred -------------hhHhhhhhh-----hh----hhhh---------hcc---------------------------c-cc
Confidence 222233322 00 0000 000 0 00
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhh--hHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHH
Q 005266 356 PKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQH--SAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACES 433 (705)
Q Consensus 356 ~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~--~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a 433 (705)
..++..++.+-..+....+...++..|..-..|...... ...|. . ..
T Consensus 602 a~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~----~--~~------------------------- 650 (799)
T KOG4162|consen 602 ALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWY----L--LQ------------------------- 650 (799)
T ss_pred CcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHH----H--HH-------------------------
Confidence 001112222222333333333334443221122222211 24551 1 10
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHH
Q 005266 434 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA 513 (705)
Q Consensus 434 ~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA 513 (705)
.+-.+.|.+....+..++|..+..+|-++++- -+
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l----------------------------------------------~~ 684 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPL----------------------------------------------SA 684 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchh----------------------------------------------hH
Confidence 01125677777888888888888776665311 14
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHH--HHHHHHHHHHHcCChh
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQARE--ILRSSLTLAKKLYDIP 591 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~--~~~~Al~LArk~gD~~ 591 (705)
..||-.|..+..+|...||++.|-.|+.+. ..+- .+.+.+|.++...|+..-|.+ ++..|+.+ +-..
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--P~hv-----~s~~Ala~~lle~G~~~la~~~~~L~dalr~----dp~n 753 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALD--PDHV-----PSMTALAELLLELGSPRLAEKRSLLSDALRL----DPLN 753 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--CCCc-----HHHHHHHHHHHHhCCcchHHHHHHHHHHHhh----CCCC
Confidence 578888999999999999999999998883 3444 356669999999998888888 88888866 3333
Q ss_pred hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 592 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 592 ~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
..+| ..||.+++..||.++|.|+|..+...-+
T Consensus 754 ~eaW--~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 754 HEAW--YYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHH--HHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 4566 5689999999999999999998876654
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.46 E-value=0.0012 Score=76.00 Aligned_cols=382 Identities=15% Similarity=0.109 Sum_probs=221.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCch
Q 005266 88 TFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPD 167 (705)
Q Consensus 88 ~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~ 167 (705)
+....+.++...|....|...|.+.-.... +..+ +.-.+|+++...|++..|..++..++.. |+.+
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~-------Dk~~---~~E~rA~ll~kLg~~~eA~~~y~~Li~r----NPdn 71 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQIL-------DKLA---VLEKRAELLLKLGRKEEAEKIYRELIDR----NPDN 71 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCC-------CHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCc
Confidence 334457888999999999888877443333 4455 7889999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHhcccC--ChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHH
Q 005266 168 LQMFFATAILHVHLMQWD--DENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDA 245 (705)
Q Consensus 168 ~~~~~~La~~~~~L~~~~--~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~ 245 (705)
..++..|..++..-..+. +.......++...+.. +....-+.-- |. ++.-....+.++.
T Consensus 72 ~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~-------------L~---~~~g~~F~~~~~~ 132 (517)
T PF12569_consen 72 YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY---PRSDAPRRLP-------------LD---FLEGDEFKERLDE 132 (517)
T ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC---ccccchhHhh-------------cc---cCCHHHHHHHHHH
Confidence 999988888774332111 1223333333222221 1100000000 00 1111222233344
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCccccccccc
Q 005266 246 AMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKL 325 (705)
Q Consensus 246 ~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 325 (705)
.|.....| -||-++..|+.| ... ..|...+++.+.. .-.+...... +.++. +.
T Consensus 133 yl~~~l~K--gvPslF~~lk~L----y~d----------~~K~~~i~~l~~~-~~~~l~~~~~-----~~~~~----~~- 185 (517)
T PF12569_consen 133 YLRPQLRK--GVPSLFSNLKPL----YKD----------PEKAAIIESLVEE-YVNSLESNGS-----FSNGD----DE- 185 (517)
T ss_pred HHHHHHhc--CCchHHHHHHHH----HcC----------hhHHHHHHHHHHH-HHHhhcccCC-----CCCcc----cc-
Confidence 44322223 113333333322 221 2234555555555 0000111000 00000 00
Q ss_pred ccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHH
Q 005266 326 VLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLM 405 (705)
Q Consensus 326 ~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~ 405 (705)
...+|- ...-++++.+.|+-..|++++|.+|+++|+.+ +|..+ .
T Consensus 186 -~~~~p~---------~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h----------tPt~~------------e---- 229 (517)
T PF12569_consen 186 -EKEPPS---------TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH----------TPTLV------------E---- 229 (517)
T ss_pred -ccCCch---------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----------CCCcH------------H----
Confidence 000111 12336777889999999999999999999997 44421 1
Q ss_pred HHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCC
Q 005266 406 LLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 485 (705)
Q Consensus 406 l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd 485 (705)
.+++.|.++-..|++++|...+..|-.++.... ..+.-.+-..++.|+
T Consensus 230 -----------------------------ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR---yiNsK~aKy~LRa~~ 277 (517)
T PF12569_consen 230 -----------------------------LYMTKARILKHAGDLKEAAEAMDEARELDLADR---YINSKCAKYLLRAGR 277 (517)
T ss_pred -----------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH---HHHHHHHHHHHHCCC
Confidence 223678899999999999999999999976633 112222555666787
Q ss_pred hhhHHHHHHhhccccccCCccchhhhHHHHHH--HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Q 005266 486 AESSSQAIDLIGPVYQMKDTINGVREEASLHF--AYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 563 (705)
Q Consensus 486 ~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~--~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i 563 (705)
.++...-+.+|......|. ..+.+.-..|| -.|.++.++|++..|+..+....+.+. +.-+-|.--+++.
T Consensus 278 ~e~A~~~~~~Ftr~~~~~~--~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~-~~~~DQfDFH~Yc----- 349 (517)
T PF12569_consen 278 IEEAEKTASLFTREDVDPL--SNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD-DFEEDQFDFHSYC----- 349 (517)
T ss_pred HHHHHHHHHhhcCCCCCcc--cCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHhcccccHHHHH-----
Confidence 7666666666655422222 22222333454 459999999999999999999999984 5555455332221
Q ss_pred HHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCc
Q 005266 564 ALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDR 610 (705)
Q Consensus 564 ~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~ 610 (705)
++.| ....|-.-+.+-.++.+.+.-.-+....-++|-..-|.
T Consensus 350 -~RK~----t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~ 391 (517)
T PF12569_consen 350 -LRKM----TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDK 391 (517)
T ss_pred -Hhhc----cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcC
Confidence 1222 24566677777777777776666666666666555443
No 65
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.46 E-value=0.0042 Score=73.28 Aligned_cols=430 Identities=15% Similarity=0.116 Sum_probs=245.9
Q ss_pred hhhhhhhHHHHHHHHHH-HcCCChhHHHHHHHHHhhccccccccccchh--hHhHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 005266 81 CFELKCRTFSLLSQCYH-LVGAIPPQKLILYKALDLTSSASQDVAVKLW--SCNFNSQLANAFIIEGDYQSSISALQSGY 157 (705)
Q Consensus 81 ~~dlK~~~~~lLA~~y~-~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W--~~~f~~~lA~~~~~~~d~~~A~~~L~~~~ 157 (705)
-.+....+.+.||++|+ .+.+...|+.+|.||+.+..+ +... .|.-.++++.++...+-.. |..++++.+
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence 34777888888999999 578889999999999999975 3333 3444456788888877777 999999999
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhh
Q 005266 158 VCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAA 237 (705)
Q Consensus 158 ~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~ 237 (705)
+.....+.....+.|.+.++.+.+.. .++..+...+........ . .|- ....+++. +.++.
T Consensus 127 ~~~~~~~~~~w~~~frll~~~l~~~~-~d~~~Al~~L~~~~~~a~-----~----~~d----~~~~v~~~-----l~~~~ 187 (608)
T PF10345_consen 127 EDSETYGHSAWYYAFRLLKIQLALQH-KDYNAALENLQSIAQLAN-----Q----RGD----PAVFVLAS-----LSEAL 187 (608)
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhh-----h----cCC----HHHHHHHH-----HHHHH
Confidence 98877778889999999988887765 567667666655554431 0 011 22233331 11110
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCc
Q 005266 238 HHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNA 317 (705)
Q Consensus 238 ~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~ 317 (705)
+ -+..+.. ...++.+++.+.....-.+++
T Consensus 188 ---------l----------------------~l~~~~~--------~d~~~~l~~~~~~~~~~q~~~------------ 216 (608)
T PF10345_consen 188 ---------L----------------------HLRRGSP--------DDVLELLQRAIAQARSLQLDP------------ 216 (608)
T ss_pred ---------H----------------------HhcCCCc--------hhHHHHHHHHHHHHhhcccCC------------
Confidence 0 0111111 111223333322200000111
Q ss_pred ccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcC--C-C-CCccccchh
Q 005266 318 RQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLG--I-T-DGVREVDLQ 393 (705)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~--~-~-~~~~e~~l~ 393 (705)
. - ..+.+.++..++-+.++...|+.+.+...+.+--..+++.-...+ . . ++.-.++..
T Consensus 217 ------~-----------~-~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~ 278 (608)
T PF10345_consen 217 ------S-----------V-HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIG 278 (608)
T ss_pred ------C-----------C-CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecc
Confidence 0 0 224467788888899999999987777666666665555333320 0 0 100000000
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChh------
Q 005266 394 HSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS------ 467 (705)
Q Consensus 394 ~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~------ 467 (705)
. ..+..+. +. ....|....+ .-+..+.+-|...+..|..+.|..++.++++..++..
T Consensus 279 ~-~~~~~~~--------------~~-~~f~wl~~~~-l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~ 341 (608)
T PF10345_consen 279 E-GSSNSGG--------------TP-LVFSWLPKEE-LYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSA 341 (608)
T ss_pred c-ccccCCC--------------ce-eEEeecCHHH-HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCC
Confidence 0 0000000 00 0112222222 2344555779999999999999999999987743211
Q ss_pred -----------------HHHHHHHHHHHHHHhhCChhhHHHHHHhhcccccc-CCccchhhhHHHHHHHHHHHHHHhcCH
Q 005266 468 -----------------MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQM-KDTINGVREEASLHFAYGLLLMRQQDF 529 (705)
Q Consensus 468 -----------------g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~-~~~~~g~~~qA~al~~lG~~~~~~g~~ 529 (705)
.+..++...++.....|++....+.++.+...+.. |.. ....-.+..+|..|..+...|+.
T Consensus 342 ~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~yL~gl~~q~~g~l 420 (608)
T PF10345_consen 342 PSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSK-LYESLYPLLHYLLGLYYQSTGDL 420 (608)
T ss_pred CCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccc-hhhhhhHHHHHHHHHHHHHcCCH
Confidence 12334455555555678887766666655544321 221 00101356889999999999999
Q ss_pred HHHHHHHHHHH----HHHHhcccCHHHHHHHHHHHHHHHH----------------------------------------
Q 005266 530 QEARNRLAKGL----QIAHNHMGNLQLVSQYLTILGNLAL---------------------------------------- 565 (705)
Q Consensus 530 ~eA~~~L~eAL----~la~~e~gn~~l~a~aL~~LG~i~~---------------------------------------- 565 (705)
+.|+.++.+.. ..+.+....+.+-.-+...+-.|+.
T Consensus 421 ~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~ 500 (608)
T PF10345_consen 421 EAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLA 500 (608)
T ss_pred HHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHH
Confidence 99999998111 0000001111111111111111111
Q ss_pred --HCC---ChHHHHHHHHHHHHHH-HHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 566 --ALH---DTVQAREILRSSLTLA-KKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 566 --~lg---~~~qA~~~~~~Al~LA-rk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
... ...++...+..++..+ +++++......+++.++-.+- .|+.++..+.........
T Consensus 501 ~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A 564 (608)
T PF10345_consen 501 TYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLA 564 (608)
T ss_pred HHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence 011 2237888899999999 999999988888998888776 788887776555544433
No 66
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.45 E-value=1.7e-05 Score=81.16 Aligned_cols=180 Identities=10% Similarity=0.002 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 005266 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (705)
Q Consensus 343 ~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~ 422 (705)
.+-+++-.+..+...|++++|...+++.+.. .|.. -|
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----------~p~~---------~~------------------------ 68 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR----------YPFS---------PY------------------------ 68 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCc---------hh------------------------
Confidence 3456677778888888888888887777664 1110 01
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhC-C----hhhHHHHHHhhc
Q 005266 423 GFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG-D----AESSSQAIDLIG 497 (705)
Q Consensus 423 ~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~g-d----~d~~~~ALeli~ 497 (705)
...+++.+|..+...|++++|...|.++++..++......+..++|.++.... + ......|++.+.
T Consensus 69 ---------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~ 139 (235)
T TIGR03302 69 ---------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQ 139 (235)
T ss_pred ---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 01233467889999999999999999999998876655566777788877641 1 112444444444
Q ss_pred ccc-ccCCccchhhhHH------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Q 005266 498 PVY-QMKDTINGVREEA------------SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLA 564 (705)
Q Consensus 498 ~~~-~~~~~~~g~~~qA------------~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~ 564 (705)
.+. .+|++.... ++ ...+.+|..++.+|++.+|...++++++... +....+.++..+|.++
T Consensus 140 ~~~~~~p~~~~~~--~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~a~~~l~~~~ 213 (235)
T TIGR03302 140 ELIRRYPNSEYAP--DAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYP----DTPATEEALARLVEAY 213 (235)
T ss_pred HHHHHCCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC----CCcchHHHHHHHHHHH
Confidence 332 245543221 11 1235778899999999999999999987752 2244567999999999
Q ss_pred HHCCChHHHHHHHHHH
Q 005266 565 LALHDTVQAREILRSS 580 (705)
Q Consensus 565 ~~lg~~~qA~~~~~~A 580 (705)
..+|++++|.++++.-
T Consensus 214 ~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 214 LKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999999876643
No 67
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.45 E-value=1.8e-06 Score=73.01 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 551 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT-QIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 551 ~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~-q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
..++.++..||.+|..+|++++|.+++++|+++.+..|+.+. .++++..+|.+|...|++++|.++++...++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 457789999999999999999999999999999999998775 599999999999999999999999999888765
No 68
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.44 E-value=6.7e-06 Score=87.40 Aligned_cols=151 Identities=23% Similarity=0.133 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHH
Q 005266 447 GCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLL 523 (705)
Q Consensus 447 g~~~eA~~~f~~Al~l~~---~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~ 523 (705)
.++++|...|.+|...+. +..--+.|....+.++...+++.. .|.+|...|.+
T Consensus 29 ~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~-----------------------Aa~~~~~Aa~~- 84 (282)
T PF14938_consen 29 PDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFE-----------------------AAKAYEEAANC- 84 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHH-----------------------HHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHH-----------------------HHHHHHHHHHH-
Confidence 378889999998876532 222233344444444444333111 23445544544
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 005266 524 MRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL-HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 602 (705)
Q Consensus 524 ~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l-g~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~ 602 (705)
+..+++++|.+++++|+.+. .+.|++...+.++..+|.+|... |++++|.++|.+|+.+.+..+......-++..++.
T Consensus 85 ~k~~~~~~Ai~~~~~A~~~y-~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 85 YKKGDPDEAIECYEKAIEIY-REAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHTTHHHHHHHHHHHHHHH-HHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 45669999999999999999 57999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHcCCchHHHHHHHHHHH
Q 005266 603 LYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 603 l~~~~Gd~~~A~e~~~~~~~ 622 (705)
++...|++++|.+.++....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 99999999999998876554
No 69
>PLN03077 Protein ECB2; Provisional
Probab=98.32 E-value=0.0032 Score=77.08 Aligned_cols=97 Identities=10% Similarity=-0.070 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
..+|+.+...+...|+.++|.+.+++-.+.. . .|. ..+++.+=..+.+.|..++|.+.++.... +.|-.+
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g---~-~Pd--~~T~~~ll~a~~~~g~v~ea~~~f~~M~~---~~gi~P- 623 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESG---V-NPD--EVTFISLLCACSRSGMVTQGLEYFHSMEE---KYSITP- 623 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C-CCC--cccHHHHHHHHhhcChHHHHHHHHHHHHH---HhCCCC-
Confidence 3577788888888888888888888754321 1 111 12444454677888888888888876542 223222
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHH
Q 005266 593 QIWALSVLTALYQQLGDRGNEMENDEY 619 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~A~e~~~~ 619 (705)
....+..+.+++...|+.++|.+.++.
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 246667778888888888888877654
No 70
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.25 E-value=0.001 Score=82.57 Aligned_cols=171 Identities=9% Similarity=-0.058 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhh
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
.......+...+...|++++|...|....+.--.+. ..+...+...|...|+.++..+.++.+...+..|+
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD--~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd------- 683 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD--EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG------- 683 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-------
Confidence 356777888889999999999999998665422222 22344445556666776664444443333322233
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
...|..+..++...|++++|.+.+++-.... ..+. ..+++.|-..|...|+.++|.+.++..... .-.+|
T Consensus 684 -~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g----~~Pd--vvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd-- 753 (1060)
T PLN03218 684 -TVSYSSLMGACSNAKNWKKALELYEDIKSIK----LRPT--VSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPN-- 753 (1060)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCC--
Confidence 4688888899999999999999998754331 1222 356899999999999999999999876421 12233
Q ss_pred hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 592 TQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 592 ~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
..++..|-..+...|+.+.|.+.+....+.
T Consensus 754 --~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 754 --TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 455566668999999999999988776544
No 71
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.25 E-value=2.4e-05 Score=92.66 Aligned_cols=131 Identities=8% Similarity=-0.068 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
..+.++.+||.+.++.|+++||+.++..++.+.++.. .+..+.+.+..+.+.+++ ++++|+ ..|+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~---~a~~~~a~~L~~~~~~eeA~~~~~~~l~------~~p~-- 152 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS---EAFILMLRGVKRQQGIEAGRAEIELYFS------GGSS-- 152 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhccHHHHHHHHHHHhh------cCCC--
Confidence 4578899999999999999999999999999998854 457888888888888776 555555 3455
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
.+.+++.+|.++...|+|++|...|++++.- + -+ ...++..+|..+-..|+.++|...|++|++++
T Consensus 153 -----~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~-~--p~----~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 153 -----SAREILLEAKSWDEIGQSEQADACFERLSRQ-H--PE----FENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -----CHHHHHHHHHHHHHhcchHHHHHHHHHHHhc-C--CC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3789999999999999999999999999772 2 22 24588999999999999999999999998774
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.0021 Score=72.45 Aligned_cols=175 Identities=19% Similarity=0.231 Sum_probs=136.0
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccC
Q 005266 428 QEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMK 503 (705)
Q Consensus 428 ~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~ 503 (705)
..|..|...+..|.|+...|++++|..+|-+|..+++... .+ -+..|-++...|+.|+ +.+|-.+ +|
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg-pa--Wl~fghsfa~e~EhdQAmaaY~tAarl------~~ 377 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG-PA--WLAFGHSFAGEGEHDQAMAAYFTAARL------MP 377 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc-HH--HHHHhHHhhhcchHHHHHHHHHHHHHh------cc
Confidence 3456788889999999999999999999999999987643 11 2233444444555555 3444332 34
Q ss_pred CccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 504 DTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 504 ~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
|.. .-++++|.-+++++++.-|..++.+|+.++ - .+ .+ .++-+|-+.+..+.+.+|..+++.++.-
T Consensus 378 G~h-------lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P--~D-pl---v~~Elgvvay~~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 378 GCH-------LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-P--SD-PL---VLHELGVVAYTYEEYPEALKYFQKALEV 443 (611)
T ss_pred CCc-------chHHHHHHHHHHhccHHHHHHHHHHHHhcC-C--Cc-ch---hhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence 421 146778999999999999999999999997 2 34 33 7889999999999999999999999977
Q ss_pred HHHcCChhhHHHH--HHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 584 AKKLYDIPTQIWA--LSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 584 Ark~gD~~~q~~a--l~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
.+....... .|. .++||-+|+.++...+|..+++.+..+...
T Consensus 444 ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 444 IKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 777776654 343 578999999999999999999999988764
No 73
>PLN03077 Protein ECB2; Provisional
Probab=98.20 E-value=0.0064 Score=74.49 Aligned_cols=114 Identities=12% Similarity=0.116 Sum_probs=65.0
Q ss_pred hcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHH
Q 005266 58 THNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLA 137 (705)
Q Consensus 58 T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA 137 (705)
.+++++|+..|++. +.- -...+..+...|.+.|....|..++.+..+.... .+.++|.. +.
T Consensus 235 ~g~~~~A~~lf~~m-------~~~---d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~------Pd~~ty~~---ll 295 (857)
T PLN03077 235 CGDVVSARLVFDRM-------PRR---DCISWNAMISGYFENGECLEGLELFFTMRELSVD------PDLMTITS---VI 295 (857)
T ss_pred CCCHHHHHHHHhcC-------CCC---CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC------CChhHHHH---HH
Confidence 35566666666642 110 1134566677777777777777777665554321 22333322 23
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHH
Q 005266 138 NAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQ 196 (705)
Q Consensus 138 ~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~ 196 (705)
..+...++...|.+++....+.- ..+...++..|..+|... .+.+++.+.+++
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g---~~~d~~~~n~Li~~y~k~---g~~~~A~~vf~~ 348 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTG---FAVDVSVCNSLIQMYLSL---GSWGEAEKVFSR 348 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhC---CccchHHHHHHHHHHHhc---CCHHHHHHHHhh
Confidence 34566777777777666655431 235677777777777665 555555555443
No 74
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.19 E-value=0.0026 Score=76.12 Aligned_cols=127 Identities=11% Similarity=-0.056 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHH
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA 513 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~-~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA 513 (705)
+...+-..+...|+.++|...|....+..+- +. ......+.-.+.+.|+ .++|.++++.....|+ +
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~--~~~y~~li~~l~r~G~---~~eA~~~~~~~~~~p~--------~ 494 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR--AMHYACMIELLGREGL---LDEAYAMIRRAPFKPT--------V 494 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--ccchHhHHHHHHhcCC---HHHHHHHHHHCCCCCC--------H
Confidence 3444555677889999999999987653221 11 1123334455555666 4555556655433343 4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSL 581 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al 581 (705)
..|..+..++...|+.+.|+..+++.+++. . .+ ..+++.|+.+|...|+.++|.+.++...
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p--~~----~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMG-P--EK----LNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-C--CC----CcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 578888888889999999999988876552 1 11 2368899999999999999998887654
No 75
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.18 E-value=2.7e-05 Score=74.40 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhh
Q 005266 436 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 436 ~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
++.+|..+...|++++|..+|..++.+.+.. ..+..++|.++...|++++ +.+|++ ..|++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~y~~Al~------l~p~~------ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS---WRAHIALAGTWMMLKEYTTAINFYGHALM------LDASH------ 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cCCCC------
Confidence 5578999999999999999999999997763 2457888999999999877 677776 23442
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
+.+++.+|.++...|++++|...+++|+++.
T Consensus 92 -~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 92 -PEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred -cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6699999999999999999999999999985
No 76
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.17 E-value=5.3e-05 Score=72.21 Aligned_cols=97 Identities=21% Similarity=0.168 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
..+.+.+|..++..|++++|+..|+.++... .++.+...+...|+.++...|++++|.+.++. ..+...
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~~~ 116 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANA----PDPELKPLARLRLARILLQQGQYDEALATLQQ-------IPDEAF 116 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------ccCcch
Confidence 3477888888999999999999999887653 35577778888899999999999888877744 455566
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 005266 593 QIWALSVLTALYQQLGDRGNEMENDEYR 620 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 620 (705)
...+...+|++|...|+.++|...|+.+
T Consensus 117 ~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 117 KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7778888999999999999999888754
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=2.9e-05 Score=81.83 Aligned_cols=224 Identities=17% Similarity=0.107 Sum_probs=148.4
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHh--h
Q 005266 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA--Q 428 (705)
Q Consensus 351 ~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a--~ 428 (705)
+-||...|+..+|+|++++.|.+ .+- ++ +. .+.+++|..+.. -+.. |. -+.+. .
T Consensus 230 gkCylrLgm~r~AekqlqssL~q----------~~~-~d----Tf-llLskvY~ridQ-----P~~A-L~--~~~~gld~ 285 (478)
T KOG1129|consen 230 GKCYLRLGMPRRAEKQLQSSLTQ----------FPH-PD----TF-LLLSKVYQRIDQ-----PERA-LL--VIGEGLDS 285 (478)
T ss_pred HHHHHHhcChhhhHHHHHHHhhc----------CCc-hh----HH-HHHHHHHHHhcc-----HHHH-HH--HHhhhhhc
Confidence 47888889999999999999986 110 11 11 112344431110 0000 10 11111 1
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCC
Q 005266 429 EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKD 504 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~ 504 (705)
-|.+-.++.-.+.++..++++++|...|+.++++.+.+. ++ ...+|.-|.-.|.++- +.+.|. .|
T Consensus 286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nv-Ea--iAcia~~yfY~~~PE~AlryYRRiLq--------mG 354 (478)
T KOG1129|consen 286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINV-EA--IACIAVGYFYDNNPEMALRYYRRILQ--------MG 354 (478)
T ss_pred CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccc-ee--eeeeeeccccCCChHHHHHHHHHHHH--------hc
Confidence 224555555566778889999999999999999866532 11 2233333433333332 344433 12
Q ss_pred ccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 505 TINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 505 ~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
-.. ...+.++|++.+.-++++-++..+++|+..+. |+...+.++..||.+....||..-|-.+++-||+
T Consensus 355 ~~s-----peLf~NigLCC~yaqQ~D~~L~sf~RAlstat----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~-- 423 (478)
T KOG1129|consen 355 AQS-----PELFCNIGLCCLYAQQIDLVLPSFQRALSTAT----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT-- 423 (478)
T ss_pred CCC-----hHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--
Confidence 111 33789999999999999999999999999973 4466788999999999999999888877776653
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 585 KKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 585 rk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
... ....++++|+-+-...|+...|...+..+..+.
T Consensus 424 --~d~--~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 424 --SDA--QHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred --cCc--chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 222 346788999999999999999999877665543
No 78
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.15 E-value=6.1e-05 Score=73.45 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~ 510 (705)
..+..++.+|..+...|++++|+.+|.+|+.+.+++. .
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------------------------------~------ 70 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------------------------------D------ 70 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch------------------------------------h------
Confidence 4567778999999999999999999999988743321 0
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG-NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 587 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g-n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~ 587 (705)
.+.+|+++|.++...|++++|...+++|+++. ...+ .....+.++..+|..+..+|+.++|...+++|+...++.
T Consensus 71 -~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 71 -RSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 24578899999999999999999999999873 2221 112223334444444449999999999999998887765
No 79
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.14 E-value=3.1e-05 Score=81.71 Aligned_cols=164 Identities=20% Similarity=0.166 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccc
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 507 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~ 507 (705)
.+........++...|+++++...+..+..... ...........|.++...|+++. +.+|++ ..|++
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~------~~P~~-- 179 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-APDSARFWLALAEIYEQLGDPDKALRDYRKALE------LDPDD-- 179 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH------H-TT---
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------cCCCC--
Confidence 345555566778889999999999988664321 22334456667888888888766 677766 45553
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc
Q 005266 508 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 587 (705)
Q Consensus 508 g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~ 587 (705)
..+...+++.+...|+++++++.+....+.. ..|+. .+..+|.++..+|++++|..++++++. ..-
T Consensus 180 -----~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~----~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p 245 (280)
T PF13429_consen 180 -----PDARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPD----LWDALAAAYLQLGRYEEALEYLEKALK--LNP 245 (280)
T ss_dssp -----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCC----HCHHHHHHHHHHT-HHHHHHHHHHHHH--HST
T ss_pred -----HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHH----HHHHHHHHhcccccccccccccccccc--ccc
Confidence 3467777888888999999888888776664 23433 345679999999999999999999663 233
Q ss_pred CChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 588 YDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 588 gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
+|+ -.+..+++++...|+.++|.+.+....+
T Consensus 246 ~d~----~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDP----LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-H----HHHHHHHHHHT-----------------
T ss_pred ccc----cccccccccccccccccccccccccccc
Confidence 343 3344678999999999999887766544
No 80
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.13 E-value=0.00021 Score=72.14 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=65.0
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH-HhhCCh--hh----HHHHHHhhccc
Q 005266 427 AQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY-FCIGDA--ES----SSQAIDLIGPV 499 (705)
Q Consensus 427 a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~-l~~gd~--d~----~~~ALeli~~~ 499 (705)
..+|..+...+.+|.++...|++++|..+|.+|+++.++.. ....++|.++ ...|+. ++ +.++++
T Consensus 67 ~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~---~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~----- 138 (198)
T PRK10370 67 RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA---ELYAALATVLYYQAGQHMTPQTREMIDKALA----- 138 (198)
T ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-----
Confidence 44567788899999999999999999999999999977633 2234444432 333432 22 333333
Q ss_pred cccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 500 YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 500 ~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
..|++ ..+++.+|..++..|++++|..++++++++-
T Consensus 139 -~dP~~-------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 139 -LDANE-------VTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred -hCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 22331 3456666666666666666666666666664
No 81
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.12 E-value=2.9e-05 Score=74.22 Aligned_cols=107 Identities=12% Similarity=0.062 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhc
Q 005266 452 AAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ 527 (705)
Q Consensus 452 A~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g 527 (705)
-+++|++|+++.++. ..+.|.++...|++++ +.+++. ..|.+ +.+|+.+|.++...|
T Consensus 12 ~~~~~~~al~~~p~~------~~~~g~~~~~~g~~~~A~~~~~~al~------~~P~~-------~~a~~~lg~~~~~~g 72 (144)
T PRK15359 12 PEDILKQLLSVDPET------VYASGYASWQEGDYSRAVIDFSWLVM------AQPWS-------WRAHIALAGTWMMLK 72 (144)
T ss_pred HHHHHHHHHHcCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHH------cCCCc-------HHHHHHHHHHHHHHh
Confidence 357899999987764 3456888888899766 455544 23442 679999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 528 DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 528 ~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
++++|...+++|+++. -++ +.++..+|.++..+|++++|.+.|+.|+.+.
T Consensus 73 ~~~~A~~~y~~Al~l~---p~~----~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 73 EYTTAINFYGHALMLD---ASH----PEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred hHHHHHHHHHHHHhcC---CCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999874 223 3588999999999999999999999998764
No 82
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00019 Score=68.46 Aligned_cols=130 Identities=19% Similarity=0.173 Sum_probs=84.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHH
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHF 517 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~ 517 (705)
.-.......++.+.+...+..-++-.++..-...+.+.+|-++...|++++....++-+-. ..|++ .+ +..+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~--~~~d~--~l--~~~a~l 89 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA--NAPDP--EL--KPLARL 89 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCH--HH--HHHHHH
Confidence 3334444577777777767665555555545566777777777777776663332222111 11221 12 355777
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005266 518 AYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSL 581 (705)
Q Consensus 518 ~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al 581 (705)
.+|.+++.+|++++|+..|... .+....+.+...+|+||...|+.++|...|+.|+
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~--------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQI--------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc--------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8888888888888888888541 1224566688888999999999999998888874
No 83
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.10 E-value=0.00056 Score=72.43 Aligned_cols=212 Identities=18% Similarity=0.145 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 005266 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (705)
Q Consensus 343 ~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~ 422 (705)
..-..|-.+..+|..|..|+|....+--++. |+...+ ++..
T Consensus 68 t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--------------pdlT~~-qr~l------------------------ 108 (389)
T COG2956 68 TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--------------PDLTFE-QRLL------------------------ 108 (389)
T ss_pred hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--------------CCCchH-HHHH------------------------
Confidence 3456777889999999999998765554442 222221 1111
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhcccccc
Q 005266 423 GFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQM 502 (705)
Q Consensus 423 ~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~ 502 (705)
+..-||.=+|..|-+|.|+..|.. +.++.....-++.-+-.+|-...+++. |++..+..-..
T Consensus 109 ------------Al~qL~~Dym~aGl~DRAE~~f~~---L~de~efa~~AlqqLl~IYQ~treW~K---AId~A~~L~k~ 170 (389)
T COG2956 109 ------------ALQQLGRDYMAAGLLDRAEDIFNQ---LVDEGEFAEGALQQLLNIYQATREWEK---AIDVAERLVKL 170 (389)
T ss_pred ------------HHHHHHHHHHHhhhhhHHHHHHHH---HhcchhhhHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHc
Confidence 223578888999999999999976 333344444556667777776666544 22222211111
Q ss_pred CCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 005266 503 KDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 582 (705)
Q Consensus 503 ~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~ 582 (705)
.++..++ +-|.+|.-++..+....+.+.|+..+.+|++... .+- .+-..||++++..|++++|.+.++++++
T Consensus 171 ~~q~~~~-eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~--~cv-----RAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 171 GGQTYRV-EIAQFYCELAQQALASSDVDRARELLKKALQADK--KCV-----RASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred CCccchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc--cce-----ehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 1222222 1277888899999999999999999999988842 222 3556899999999999999999998875
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 583 LAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 583 LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
.|+-...-++..|...|+..|++++.......+++..
T Consensus 243 -----Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 243 -----QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred -----hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 3555566677788899999999988887766655543
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=0.00019 Score=80.82 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~ 510 (705)
.+|.++..||.++...|+|+.|..+|+.|+...++..
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~------------------------------------------- 464 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY------------------------------------------- 464 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH-------------------------------------------
Confidence 6788999999999999999999999999998766533
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 590 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~ 590 (705)
..|+-+|-.+-...+..||+..|++||++- =|-. .+...||=.+..+|.+++|.+++-+|+.|-++....
T Consensus 465 ---~lWNRLGAtLAN~~~s~EAIsAY~rALqLq---P~yV----R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~ 534 (579)
T KOG1125|consen 465 ---LLWNRLGATLANGNRSEEAISAYNRALQLQ---PGYV----RVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNH 534 (579)
T ss_pred ---HHHHHhhHHhcCCcccHHHHHHHHHHHhcC---CCee----eeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccccc
Confidence 245555655555566666666666666662 1221 244556666666666666666666666666662222
Q ss_pred h------hHHHHHHHHHHHHHHcCCchHHHH
Q 005266 591 P------TQIWALSVLTALYQQLGDRGNEME 615 (705)
Q Consensus 591 ~------~q~~al~~L~~l~~~~Gd~~~A~e 615 (705)
. ..+|.. |..+....++++-+.+
T Consensus 535 ~~~~~~se~iw~t--LR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 535 NKAPMASENIWQT--LRLALSAMNRSDLLQE 563 (579)
T ss_pred ccCCcchHHHHHH--HHHHHHHcCCchHHHH
Confidence 1 235543 3345555666554433
No 85
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.07 E-value=9.3e-05 Score=72.60 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=75.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccch
Q 005266 429 EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTING 508 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g 508 (705)
++..+..++.+|.++...|++++|..+|++|+++.++.. +
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------------~---- 70 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN------------------------------------D---- 70 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc------------------------------------h----
Confidence 346788899999999999999999999999988644321 0
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCC-------hHHHHHHHHHHH
Q 005266 509 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD-------TVQAREILRSSL 581 (705)
Q Consensus 509 ~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~-------~~qA~~~~~~Al 581 (705)
.+.+++.+|.++...|++++|...+.++++... .+ ..++..+|.++...|+ .++|...++.|+
T Consensus 71 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~ 140 (172)
T PRK02603 71 ---RSYILYNMGIIYASNGEHDKALEYYHQALELNP---KQ----PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAA 140 (172)
T ss_pred ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cc----HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHH
Confidence 134778888888888899999998888888741 12 2345566666666655 444444444444
Q ss_pred HHHH
Q 005266 582 TLAK 585 (705)
Q Consensus 582 ~LAr 585 (705)
...+
T Consensus 141 ~~~~ 144 (172)
T PRK02603 141 EYWK 144 (172)
T ss_pred HHHH
Confidence 4433
No 86
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.0061 Score=66.92 Aligned_cols=181 Identities=14% Similarity=0.163 Sum_probs=114.8
Q ss_pred HHHHHHHhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhh
Q 005266 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (705)
Q Consensus 4 ~~~~L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~d 83 (705)
.+-.|.-||.+.+-..-.+.|+.-+|-+.+++. | |.- -+...-+|.|-|. .-|+..|...+.-|+.-.++|. .+
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkm-f-~na-g~lkmnigni~~k-kr~fskaikfyrmaldqvpsin--k~ 273 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKM-F-PNA-GILKMNIGNIHFK-KREFSKAIKFYRMALDQVPSIN--KD 273 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccc-c-CCC-ceeeeeecceeee-hhhHHHHHHHHHHHHhhccccc--hh
Confidence 456789999999999999999999999998877 4 431 1233445666553 3567777777777666445554 25
Q ss_pred hhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhh-
Q 005266 84 LKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE- 162 (705)
Q Consensus 84 lK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~- 162 (705)
.+..+..-+.-.|.++|++..|..-...+++..++ +...|.+- -++..-||-.+--+.+++++.+--.
T Consensus 274 ~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn---------~~a~~nl~--i~~f~i~d~ekmkeaf~kli~ip~~~ 342 (840)
T KOG2003|consen 274 MRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN---------FIAALNLI--ICAFAIGDAEKMKEAFQKLIDIPGEI 342 (840)
T ss_pred hHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc---------HHhhhhhh--hhheecCcHHHHHHHHHHHhcCCCCC
Confidence 55555666677788999999998888888887773 12223322 2233447777778888888865422
Q ss_pred --------cCCchHHHHHHHHHHHHHhcccCCh--hHHHHHHHHhHHHhh
Q 005266 163 --------ISYPDLQMFFATAILHVHLMQWDDE--NSVLRSINQCDRVWE 202 (705)
Q Consensus 163 --------~~~~~~~~~~~La~~~~~L~~~~~~--~~v~~al~~~~~~~~ 202 (705)
..+|....+..... --||.+|++. ..+++++..+-.++.
T Consensus 343 dddkyi~~~ddp~~~ll~eai~-nd~lk~~ek~~ka~aek~i~ta~kiia 391 (840)
T KOG2003|consen 343 DDDKYIKEKDDPDDNLLNEAIK-NDHLKNMEKENKADAEKAIITAAKIIA 391 (840)
T ss_pred CcccccCCcCCcchHHHHHHHh-hHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 23333333333222 2244445443 456677666666664
No 87
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.02 E-value=8.5e-05 Score=72.44 Aligned_cols=110 Identities=13% Similarity=0.000 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
++.+|+..|.++...|++++|...+++|+.+. . ++...+.++..||.++...|++++|.+.++.|+.+-...++.+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-I---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-c---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 57899999999999999999999999999884 2 3344566899999999999999999999999998733322211
Q ss_pred -hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 592 -TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 592 -~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
..+.++..+|+.+...|+...|...+..+....+
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 2223334444444488888887777666655544
No 88
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.0011 Score=70.39 Aligned_cols=95 Identities=15% Similarity=0.045 Sum_probs=76.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHH
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHF 517 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~ 517 (705)
.+|..|+.-+++|=++..|++|+...+++...+-+-.|++.|.-..||+....+++.+.=. .+..+ +.+++
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~----~d~~h-----~ealn 433 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT----SDAQH-----GEALN 433 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc----cCcch-----HHHHH
Confidence 6789999999999999999999999888777788889998888888998775565553211 12223 45999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Q 005266 518 AYGLLLMRQQDFQEARNRLAKGLQ 541 (705)
Q Consensus 518 ~lG~~~~~~g~~~eA~~~L~eAL~ 541 (705)
++|+...+.|+.++|+.+|..|-.
T Consensus 434 NLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 434 NLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hHHHHHhhcCchHHHHHHHHHhhh
Confidence 999999999999999999997743
No 89
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.99 E-value=0.00022 Score=69.88 Aligned_cols=104 Identities=19% Similarity=0.200 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
++.+++.+|..+...|++++|..+++++++.. . ..+ ..+.++..+|.++...|++++|..++++|+.+...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~-~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 104 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLE-E-DPN--DRSYILYNMGIIYASNGEHDKALEYYHQALELNPK----- 104 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-h-ccc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----
Confidence 47899999999999999999999999999885 2 222 24568999999999999999999999999986322
Q ss_pred hHHHHHHHHHHHHHHcCCc-------hHHHHHHHHHHHHHH
Q 005266 592 TQIWALSVLTALYQQLGDR-------GNEMENDEYRRKKLD 625 (705)
Q Consensus 592 ~q~~al~~L~~l~~~~Gd~-------~~A~e~~~~~~~~~~ 625 (705)
...++..+|.+|...|+. ++|...+..+.+..+
T Consensus 105 -~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~ 144 (172)
T PRK02603 105 -QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWK 144 (172)
T ss_pred -cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHH
Confidence 244455667777666654 444444444444333
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.97 E-value=0.004 Score=66.52 Aligned_cols=162 Identities=15% Similarity=0.204 Sum_probs=111.7
Q ss_pred HHHHhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhh
Q 005266 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (705)
Q Consensus 7 ~L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~ 86 (705)
++..=|-.+--.++-+.||.=|+.|++-+|-| +-+|+|=|.+|+. .+.+++|+.-|.+.+.-.++...-.
T Consensus 74 aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-----~~ARiQRg~vllK-~Gele~A~~DF~~vl~~~~s~~~~~---- 143 (504)
T KOG0624|consen 74 AIFRRATVYLAMGKSKAALQDLSRVLELKPDF-----MAARIQRGVVLLK-QGELEQAEADFDQVLQHEPSNGLVL---- 143 (504)
T ss_pred HHHHHHHHHhhhcCCccchhhHHHHHhcCccH-----HHHHHHhchhhhh-cccHHHHHHHHHHHHhcCCCcchhH----
Confidence 33333333444456677788888888655522 3589999999987 5789999999998766555443222
Q ss_pred hHHHHHHHH------------HHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHH
Q 005266 87 RTFSLLSQC------------YHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQ 154 (705)
Q Consensus 87 ~~~~lLA~~------------y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~ 154 (705)
++++.|+-+ +.-.|+-..+...+.+-++. .+|--.|+..+|.+|...|++.+|+.-+.
T Consensus 144 eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi----------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk 213 (504)
T KOG0624|consen 144 EAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI----------QPWDASLRQARAKCYIAEGEPKKAIHDLK 213 (504)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc----------CcchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 444444432 23334555666666666653 36999999999999999999999999888
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhH
Q 005266 155 SGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCD 198 (705)
Q Consensus 155 ~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~ 198 (705)
....+ ...+.+.+|.++.++..+ ..++.+|+.+.
T Consensus 214 ~askL----s~DnTe~~ykis~L~Y~v------gd~~~sL~~iR 247 (504)
T KOG0624|consen 214 QASKL----SQDNTEGHYKISQLLYTV------GDAENSLKEIR 247 (504)
T ss_pred HHHhc----cccchHHHHHHHHHHHhh------hhHHHHHHHHH
Confidence 76555 788999999999999665 34444554443
No 91
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.94 E-value=0.00027 Score=83.94 Aligned_cols=148 Identities=7% Similarity=-0.054 Sum_probs=111.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHH
Q 005266 454 FHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEAR 533 (705)
Q Consensus 454 ~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~ 533 (705)
+..-+++...++..-.+.+..++|.+....|.+++.++.++..-+ ..|++ ..++..++.++.+.+++++|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~-------~~a~~~~a~~L~~~~~~eeA~ 140 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDS-------SEAFILMLRGVKRQQGIEAGR 140 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCc-------HHHHHHHHHHHHHhccHHHHH
Confidence 333334444444333367799999999999998773333322211 23553 568888899999999999999
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHH
Q 005266 534 NRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNE 613 (705)
Q Consensus 534 ~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A 613 (705)
..++++|... - .| +.++..+|.+...+|++++|.++|+++++ ...| ..+++..+|..+...|+.+.|
T Consensus 141 ~~~~~~l~~~-p--~~----~~~~~~~a~~l~~~g~~~~A~~~y~~~~~---~~p~---~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 141 AEIELYFSGG-S--SS----AREILLEAKSWDEIGQSEQADACFERLSR---QHPE---FENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred HHHHHHhhcC-C--CC----HHHHHHHHHHHHHhcchHHHHHHHHHHHh---cCCC---cHHHHHHHHHHHHHcCCHHHH
Confidence 9999998885 2 22 35888999999999999999999999986 3333 477888899999999999999
Q ss_pred HHHHHHHHHH
Q 005266 614 MENDEYRRKK 623 (705)
Q Consensus 614 ~e~~~~~~~~ 623 (705)
.+.|+.+.+.
T Consensus 208 ~~~~~~a~~~ 217 (694)
T PRK15179 208 RDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHh
Confidence 9999988543
No 92
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.93 E-value=0.014 Score=63.50 Aligned_cols=125 Identities=17% Similarity=0.174 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhH
Q 005266 437 MLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREE 512 (705)
Q Consensus 437 ~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~q 512 (705)
..+...+...|+.++|...-+.+++...+... ..-+-.+..+|+.. .+..+. ..|+ .
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L------~~~~~~l~~~d~~~l~k~~e~~l~------~h~~-------~ 327 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPRL------CRLIPRLRPGDPEPLIKAAEKWLK------QHPE-------D 327 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccChhH------HHHHhhcCCCCchHHHHHHHHHHH------hCCC-------C
Confidence 34566677889999999999999987665441 11111223566655 444444 3333 3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcC
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 588 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~g 588 (705)
+..+..+|..++..+.+.+|..+|+.|++.. ..+..+.-+|++|-.+|++++|.+..+.|+.+.+..+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLR--------PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 5679999999999999999999999888773 2234677899999999999999999999997776544
No 93
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.061 Score=59.04 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=77.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccc-cCCccchhhhHHHHH
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQ-MKDTINGVREEASLH 516 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~-~~~~~~g~~~qA~al 516 (705)
+.|..+...|+.++|.-+|+.|..+.+.+- .|...+--.|+..|...+ |+.+.+.+++ +|.+ |-++
T Consensus 339 lKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL---~~Y~GL~hsYLA~~~~kE---A~~~An~~~~~~~~s-------A~~L 405 (564)
T KOG1174|consen 339 LKGRLLIALERHTQAVIAFRTAQMLAPYRL---EIYRGLFHSYLAQKRFKE---ANALANWTIRLFQNS-------ARSL 405 (564)
T ss_pred hccHHHHhccchHHHHHHHHHHHhcchhhH---HHHHHHHHHHHhhchHHH---HHHHHHHHHHHhhcc-------hhhh
Confidence 556666677777777777777777754421 223333334444444333 1111111111 1111 2333
Q ss_pred HHHH-HHHHHhcC-HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHH
Q 005266 517 FAYG-LLLMRQQD-FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 594 (705)
Q Consensus 517 ~~lG-~~~~~~g~-~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~ 594 (705)
-..| .+++...+ -+.||.++.++|++ + |-.+. +.+.+++.+..-|.++-+.+.++.+|.. ..| .
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~--~----P~Y~~-AV~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D----~ 471 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKI--N----PIYTP-AVNLIAELCQVEGPTKDIIKLLEKHLII---FPD----V 471 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhcc--C----CccHH-HHHHHHHHHHhhCccchHHHHHHHHHhh---ccc----c
Confidence 3343 44444443 33466666666555 1 11222 4455566666666666666666655532 222 2
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 595 WALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 595 ~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
.-++.||++.++...+++|+++|..+++
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3344566666666666666666555543
No 94
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.89 E-value=0.024 Score=65.15 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=112.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHH
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHF 517 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~ 517 (705)
+.+.-....|+..+|.....+|....++.. -.|++-+-+. +..+++++|-.++...-...| -...|+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pnse-----eiwlaavKle-~en~e~eraR~llakar~~sg-------TeRv~m 655 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPNSE-----EIWLAAVKLE-FENDELERARDLLAKARSISG-------TERVWM 655 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCcH-----HHHHHHHHHh-hccccHHHHHHHHHHHhccCC-------cchhhH
Confidence 334444556888888888888888877766 6677766665 334456666666554411111 134677
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 005266 518 AYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWAL 597 (705)
Q Consensus 518 ~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al 597 (705)
-.+...-.++..++|++.|.++|+.+ . +.. -.+..+|+|+.+.++.+.|++.|.+++..+= ...-+|.+
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~lk~f-p-~f~-----Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP----~~ipLWll 724 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEALKSF-P-DFH-----KLWLMLGQIEEQMENIEMAREAYLQGTKKCP----NSIPLWLL 724 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHhC-C-chH-----HHHHHHhHHHHHHHHHHHHHHHHHhccccCC----CCchHHHH
Confidence 77777777899999999999999997 2 444 2567799999999999999999999875432 23457755
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHH
Q 005266 598 SVLTALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 598 ~~L~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
|+++-...|.+-+|+..++...
T Consensus 725 --LakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 725 --LAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred --HHHHHHHhcchhhHHHHHHHHH
Confidence 6788888888888888666544
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.88 E-value=0.025 Score=67.56 Aligned_cols=476 Identities=13% Similarity=0.040 Sum_probs=253.2
Q ss_pred HHHHHHHhHHHhhhcccHhHHhHHHHHHhccCCCC--------------C--hHHHHHHHHHH---------------HH
Q 005266 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSF--------------L--PIIEVKTRLRI---------------ST 52 (705)
Q Consensus 4 ~~~~L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~--------------~--p~~EA~~rLrl---------------a~ 52 (705)
.|.+.-.|...+|...+..-|-||+.-++.-+.+. + ...++. |||- -+
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I-~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI-CLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH-HHHHhhhchHHHHHhhhhhcc
Confidence 45566667777777778888888887777532211 1 111111 3332 35
Q ss_pred HHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhH
Q 005266 53 LLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNF 132 (705)
Q Consensus 53 iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f 132 (705)
+++=+.+|...|..+|+.|+...|.- |....-|.+.|...|.+..|..+..||..+.+. .| .=
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPkD-------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~--------s~--y~ 632 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPKD-------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPL--------SK--YG 632 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCchh-------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH--------hH--HH
Confidence 67778899999999999887765554 478889999999999999999899999998873 23 24
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh--------cccCChhHHHHHHHHhHHHhhhc
Q 005266 133 NSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHL--------MQWDDENSVLRSINQCDRVWESI 204 (705)
Q Consensus 133 ~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L--------~~~~~~~~v~~al~~~~~~~~~~ 204 (705)
+|..|-+....|.|..|+..|+.+...++. +.-+...|+++++.+ .+....|.++.++.++--.+..-
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~----e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSL----ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 667888889999999999999999876422 222223333333322 12233334444433332222100
Q ss_pred CcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCC--CCCChhhhh
Q 005266 205 DPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSR--PDLPSRERS 282 (705)
Q Consensus 205 ~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~--~~~~~~~~~ 282 (705)
-++. +..|..+...-..+.+ +++ ++
T Consensus 709 ~~~~-------------------------------------------------~~~Wi~asdac~~f~q~e~~~----vn 735 (1238)
T KOG1127|consen 709 LQSD-------------------------------------------------RLQWIVASDACYIFSQEEPSI----VN 735 (1238)
T ss_pred hhhh-------------------------------------------------HHHHHHHhHHHHHHHHhcccc----hH
Confidence 0000 1111111100000000 111 00
Q ss_pred HHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccccCCC---------CcccccccchhhHHHHHHHHHHH
Q 005266 283 ALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPS---------PMDGEWLPKSAVYALVDLMVVIL 353 (705)
Q Consensus 283 ~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~l~~~WLpk~~~~aL~yll~~~~ 353 (705)
..-.-.+-.+++. +.. .+ ..|.+.+|.. .....|..-.-.+ +-|+.. +
T Consensus 736 --~h~l~il~~q~e~-----~~~-l~------------~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny-lr~f~~--l 792 (1238)
T KOG1127|consen 736 --MHYLIILSKQLEK-----TGA-LK------------KNDLLFLGYECGIAHLSLAIHMYPWYNLGINY-LRYFLL--L 792 (1238)
T ss_pred --HHHHHHHHHHHHh-----ccc-Cc------------chhHHHHHHHHhhHHHHHhhccchHHHHhHHH-HHHHHH--c
Confidence 0011112223333 111 00 0011111100 0123454332222 111111 1
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHH---HHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhh
Q 005266 354 GRPKGLFKECMQRIQSGMQTIQDA---LLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (705)
Q Consensus 354 ~~~~g~~~ka~k~l~~al~~i~~~---l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~ 430 (705)
.-...+...|..++.++.+..... ...+|+..+. . -.+..+-|+++-.++|-+.
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~-------g-nva~aQHCfIks~~sep~~--------------- 849 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGI-------G-NVACAQHCFIKSRFSEPTC--------------- 849 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhcc-------c-hhhhhhhhhhhhhhccccc---------------
Confidence 122222357778888887752210 1112211000 0 0001112222222222222
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH--hhCChhhHHHHHHhhcc---ccccCCc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF--CIGDAESSSQAIDLIGP---VYQMKDT 505 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l--~~gd~d~~~~ALeli~~---~~~~~~~ 505 (705)
......+|.++....+++.|...|.++..+++.+. .-|++..++ ..|+.- .++.+|+- ++...|.
T Consensus 850 --~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl-----~~WlG~Ali~eavG~ii---~~~~lfaHs~el~~~~gk 919 (1238)
T KOG1127|consen 850 --HCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNL-----VQWLGEALIPEAVGRII---ERLILFAHSDELCSKEGK 919 (1238)
T ss_pred --hhheeccceeEEecccHHHhhHHHHhhhhcCchhh-----HHHHHHHHhHHHHHHHH---HHHHHHHhhHHhhccccc
Confidence 23344789999999999999999999999998876 444443333 345421 22222221 1122222
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCHHHHHHHH------HHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQQDFQEARNRL------AKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 579 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L------~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~ 579 (705)
..+ -.+|+.--..+...|++++-...- +-++.-.- .++++ .+-++...|...-+++.++.|.+.+.+
T Consensus 920 a~~----f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf--~~~p~-~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 920 AKK----FQYWLCATEIHLQNGNIEESINTARKISSASLALSYYF--LGHPQ-LCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred cch----hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH--hcCcc-hhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 222 235555556666677776644443 33444442 45644 456999999999999999999999999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHH
Q 005266 580 SLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 617 (705)
Q Consensus 580 Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~ 617 (705)
...+-..--|...-=.+-..+|+++...|+.++|--.+
T Consensus 993 liglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 993 LIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh
Confidence 88777665554322225567899999999998775443
No 96
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.85 E-value=0.14 Score=61.03 Aligned_cols=151 Identities=11% Similarity=0.118 Sum_probs=115.0
Q ss_pred HHHHHHhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhh
Q 005266 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (705)
Q Consensus 5 ~~~L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dl 84 (705)
..+|+|.|...=-+|++-.|..=+.-|++-.|..+--.. .||. .+|.-+|.+.+-+-.-.|..|.|+.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~-----tL~~-IyEqrGd~eK~l~~~llAAHL~p~d~----- 207 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYY-----TLGE-IYEQRGDIEKALNFWLLAAHLNPKDY----- 207 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHH-----HHHH-HHHHcccHHHHHHHHHHHHhcCCCCh-----
Confidence 678999999955559999998855555543332222222 2333 47778899999999888888888887
Q ss_pred hhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcC
Q 005266 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (705)
Q Consensus 85 K~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~ 164 (705)
..+..+++...+.|.++.|.-...|||...+ .+ | .|...+++++...|+...|.+.+..+..+- +
T Consensus 208 --e~W~~ladls~~~~~i~qA~~cy~rAI~~~p-------~n-~--~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p 272 (895)
T KOG2076|consen 208 --ELWKRLADLSEQLGNINQARYCYSRAIQANP-------SN-W--ELIYERSSLYQKTGDLKRAMETFLQLLQLD---P 272 (895)
T ss_pred --HHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-------cc-h--HHHHHHHHHHHHhChHHHHHHHHHHHHhhC---C
Confidence 8999999999999999999999999999887 33 5 567778999999999999999999998872 2
Q ss_pred CchHHHHHHHHHHHHHh
Q 005266 165 YPDLQMFFATAILHVHL 181 (705)
Q Consensus 165 ~~~~~~~~~La~~~~~L 181 (705)
+...+-+-.++...+|-
T Consensus 273 ~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 273 PVDIERIEDLIRRVAHY 289 (895)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 22455566666665444
No 97
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0015 Score=71.12 Aligned_cols=155 Identities=17% Similarity=0.120 Sum_probs=113.9
Q ss_pred ccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHh
Q 005266 333 DGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLE 412 (705)
Q Consensus 333 ~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le 412 (705)
+...|.-..+.+-+-++.+.++-..++.+++...+++||++ .|. +...- ..+.+...+
T Consensus 192 a~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l----------dpd-------h~~sk--~~~~~~k~l--- 249 (486)
T KOG0550|consen 192 AIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL----------DPD-------HQKSK--SASMMPKKL--- 249 (486)
T ss_pred HHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc----------Chh-------hhhHH--hHhhhHHHH---
Confidence 34455555566677778888888888888888888888885 111 11111 111111111
Q ss_pred HHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHhhCChhh---
Q 005266 413 NKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHAYAAVSYFCIGDAES--- 488 (705)
Q Consensus 413 ~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~-~~g~a~a~~nlalv~l~~gd~d~--- 488 (705)
..-..-|--+...|++..|.+.|..|+.++++ ...-+.+..|.|.+.++.|+.++
T Consensus 250 ---------------------e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eais 308 (486)
T KOG0550|consen 250 ---------------------EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAIS 308 (486)
T ss_pred ---------------------HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhh
Confidence 11125688899999999999999999999987 45668889999999999999766
Q ss_pred -HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 489 -SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 489 -~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
|+.|+.+ .+. . .-+|...|.+++..+++++|.+.+.+|++..
T Consensus 309 dc~~Al~i-D~s--------y----ikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 309 DCNEALKI-DSS--------Y----IKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhhhhhhc-CHH--------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888883 222 1 2378899999999999999999999999985
No 98
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.83 E-value=0.00025 Score=62.86 Aligned_cols=82 Identities=24% Similarity=0.247 Sum_probs=73.0
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccCHH---HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 005266 523 LMRQQDFQEARNRLAKGLQIAHNHMGNLQ---LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSV 599 (705)
Q Consensus 523 ~~~~g~~~eA~~~L~eAL~la~~e~gn~~---l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~ 599 (705)
..+.|+|.+|.+.|.+....+. ..++.. ..+.++..++.++...|++++|.+.+++|+.+||+.+|..+..+++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~-~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAK-QSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 4678999999999999999985 455544 677789999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 005266 600 LTALYQ 605 (705)
Q Consensus 600 L~~l~~ 605 (705)
+..+..
T Consensus 87 ~~~l~~ 92 (94)
T PF12862_consen 87 LANLLK 92 (94)
T ss_pred HHHHhh
Confidence 887764
No 99
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.80 E-value=0.00028 Score=65.53 Aligned_cols=103 Identities=13% Similarity=0.068 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccch
Q 005266 429 EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTING 508 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g 508 (705)
++..+.+.+.+|..+...|++++|...|+.++.+.++.
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------------------------------------------ 50 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------------------------------------------ 50 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------------------------------------------
Confidence 33444555667777777777777777776665543321
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 509 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 509 ~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
..+++.+|.++...|++++|...+++++++. .. + ..++..+|.+|...|+.++|.+.++.++.+.
T Consensus 51 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 51 ----SRYWLGLAACCQMLKEYEEAIDAYALAAALD-PD--D----PRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC--C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2356666666666677777777777666553 11 1 2355566777777777777777776666654
No 100
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.00029 Score=63.18 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 593 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q 593 (705)
..+|..|..++.+|++++|...+.++++.. -++ .....++..+|.++...|++++|.++++.++... ++.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~ 75 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PKSPKA 75 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CCCCcc
Confidence 468999999999999999999999998763 223 3456788999999999999999999999998654 333234
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 594 IWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 594 ~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
.++...++.++...|++++|...+....+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 677788999999999999999987766554
No 101
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.78 E-value=0.00037 Score=64.73 Aligned_cols=104 Identities=17% Similarity=0.039 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhH
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 512 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~q 512 (705)
|.+++-+|..+...|+.++|+.+|++|+...-+......+.+++|..+...|++++....|+-. +..+|++...
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~--~~~~p~~~~~---- 74 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEA--LEEFPDDELN---- 74 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHCCCcccc----
Confidence 4577889999999999999999999999864445556678999999999999988733322211 1145664332
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQI 542 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~l 542 (705)
.....+++.++...|+++||.+.+-.++.-
T Consensus 75 ~~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 75 AALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 235566788899999999999999877643
No 102
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.76 E-value=0.0005 Score=79.19 Aligned_cols=139 Identities=11% Similarity=0.060 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCCh----hh-HHHHHHhhcccccc
Q 005266 431 CESMIEMLRGQYAHSVGC---YSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA----ES-SSQAIDLIGPVYQM 502 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~---~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~----d~-~~~ALeli~~~~~~ 502 (705)
.++.-.++.|.-+...+. ++.|..+|++|++++++.. .++..++++|.....+ +. ...+.+.++.....
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a---~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT---YAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 468888899988887766 7789999999999998852 2223334444332111 11 23333333222111
Q ss_pred CCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 005266 503 KDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 582 (705)
Q Consensus 503 ~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~ 582 (705)
+.+.. .+.+|..+|..+...|++++|...+++|+.+- + .+.++..+|.++...|++++|.+.|++|+.
T Consensus 414 ~~~~~----~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~------p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 414 PELNV----LPRIYEILAVQALVKGKTDEAYQAINKAIDLE------M--SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ccCcC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11111 24578888999999999999999999998882 1 146999999999999999999999999987
Q ss_pred HH
Q 005266 583 LA 584 (705)
Q Consensus 583 LA 584 (705)
|.
T Consensus 482 L~ 483 (517)
T PRK10153 482 LR 483 (517)
T ss_pred cC
Confidence 73
No 103
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.72 E-value=0.00047 Score=61.84 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhH
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 512 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~q 512 (705)
+.+.+.+|..+...|++++|..+|..++...++......+..++|.++...|+++.....++.+-. ..|++.. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~----~ 75 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK--KYPKSPK----A 75 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HCCCCCc----c
Confidence 456788999999999999999999999988776554566788899999999997763222222111 2233221 1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
..+++.+|.++...|++++|..++.++++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 3578999999999999999999999998885
No 104
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.66 E-value=0.0002 Score=59.19 Aligned_cols=94 Identities=22% Similarity=0.169 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 594 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~ 594 (705)
+++.+|..++..|++++|...++++++.. . .+. .++..+|.++...|+.++|.+.++.++.+.....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~--~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-P--DNA----DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------ 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-C--ccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------
Confidence 57888999999999999999999998874 2 222 5788999999999999999999999988653332
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005266 595 WALSVLTALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 595 ~al~~L~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
.+...++.++...|++++|.+.+....
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 556778899999999999988776554
No 105
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00036 Score=75.87 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 466 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~ 466 (705)
..+.+.++.|.++.+.++.+.|..||++++++.++.
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh 236 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDH 236 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhh
Confidence 457788999999999999999999999999998873
No 106
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.63 E-value=0.00029 Score=57.88 Aligned_cols=65 Identities=25% Similarity=0.328 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhh
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
.|.++..+|.+++..|++++|+.+|.+|+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--------------------------------------------- 36 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN--------------------------------------------- 36 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------------------------------------
Confidence 36678899999999999999999999999875542
Q ss_pred HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQ-DFQEARNRLAKGLQI 542 (705)
Q Consensus 512 qA~al~~lG~~~~~~g-~~~eA~~~L~eAL~l 542 (705)
+.+|+++|.++...| ++.+|+..+.+|+++
T Consensus 37 -~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 37 -AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp -HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 347888999999999 799999999999876
No 107
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.63 E-value=0.00021 Score=58.70 Aligned_cols=65 Identities=25% Similarity=0.338 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH-DTVQAREILRSSLTL 583 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg-~~~qA~~~~~~Al~L 583 (705)
.|.+|+..|..++..|++++|+.++.+|+++. . + .+.++..+|.+|..+| ++++|.+.++.|+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p---~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-P---N---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-T---T---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C---C---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 37799999999999999999999999999983 1 1 2458999999999999 799999999999876
No 108
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.62 E-value=0.0011 Score=64.04 Aligned_cols=94 Identities=10% Similarity=-0.109 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhh
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~ 510 (705)
..|.+|...+..|++++|+..|+....+++... .-..|+|.++...|++.+ +.+|.. -.|+|
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~---~y~~gLG~~~Q~~g~~~~AI~aY~~A~~------L~~dd----- 102 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF---DYWFRLGECCQAQKHWGEAIYAYGRAAQ------IKIDA----- 102 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHh------cCCCC-----
Confidence 457889999999999999999999888877632 337889999999999766 555555 22443
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 544 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~ 544 (705)
+..+++.|.+++..|+.+.|+..|+.|+..+.
T Consensus 103 --p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 103 --PQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred --chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 56899999999999999999999999999983
No 109
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.61 E-value=0.00055 Score=56.45 Aligned_cols=94 Identities=19% Similarity=0.206 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHH
Q 005266 436 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASL 515 (705)
Q Consensus 436 ~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~a 515 (705)
.+.+|..+...|++++|...|.++++..++.. .+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------------------------------------~~ 36 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA----------------------------------------------DA 36 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----------------------------------------------HH
Confidence 45678888888888888888888776644321 24
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 005266 516 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 582 (705)
Q Consensus 516 l~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~ 582 (705)
++.+|.++...|++++|...+.+++++. .. +. .++..+|.++...|++++|.+.+..++.
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~--~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELD-PD--NA----KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-Cc--ch----hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 5556666666677777777777766653 11 11 4566677777777777777776666654
No 110
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.58 E-value=0.019 Score=59.93 Aligned_cols=172 Identities=13% Similarity=0.022 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
..+...+..|.-....|++++|...|++.+...+.......+..++|.+|...+++++ +++.+. .+|++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~------~~P~~~ 103 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR------LNPTHP 103 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------hCcCCC
Confidence 3566788899999999999999999999999988877677779999999999999776 344444 345442
Q ss_pred chhhhHHHHHHHHHHHHHHhc---------------CH---HHHHHHHHHHHHHHHhcccCHHHHHH-------------
Q 005266 507 NGVREEASLHFAYGLLLMRQQ---------------DF---QEARNRLAKGLQIAHNHMGNLQLVSQ------------- 555 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g---------------~~---~eA~~~L~eAL~la~~e~gn~~l~a~------------- 555 (705)
. ...++|..|.++...+ +. .+|...|++-++.. -|......
T Consensus 104 ~----~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 104 N----IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred c----hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC----cCChhHHHHHHHHHHHHHHHH
Confidence 2 2568999998865544 22 34445555544432 12222222
Q ss_pred -HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 005266 556 -YLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEY 619 (705)
Q Consensus 556 -aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~ 619 (705)
--..+|.-|+..|.+..|..-++.. .++-++-...-.++..+.+.|...|.+++|.+....
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v---~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQM---LRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHH---HHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 2335667788888887766655554 456677777788999999999999999999886543
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.57 E-value=0.001 Score=67.11 Aligned_cols=120 Identities=11% Similarity=0.057 Sum_probs=100.7
Q ss_pred hcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHH
Q 005266 58 THNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLA 137 (705)
Q Consensus 58 T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA 137 (705)
++..+++..+|++++...+..+ +++..|+++|...|+...|..++++++.+.+ .+.- +++.+|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~-------~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-------~~~~---~~~~lA 114 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS-------EQWALLGEYYLWRNDYDNALLAYRQALQLRG-------ENAE---LYAALA 114 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CCHH---HHHHHH
Confidence 6777899999999999888887 8999999999999999999999999999998 4443 667789
Q ss_pred HHH-hhcCC--HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHh
Q 005266 138 NAF-IIEGD--YQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVW 201 (705)
Q Consensus 138 ~~~-~~~~d--~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~ 201 (705)
.++ ...|+ +..|.+.|++..+. +++...+++.++..+..+ .++++++..+.++-++.
T Consensus 115 ~aL~~~~g~~~~~~A~~~l~~al~~----dP~~~~al~~LA~~~~~~---g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 115 TVLYYQAGQHMTPQTREMIDKALAL----DANEVTALMLLASDAFMQ---ADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHh----CCCChhHHHHHHHHHHHc---CCHHHHHHHHHHHHhhC
Confidence 864 66676 59999999998876 888999999999988777 77888877776664443
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.54 E-value=0.00081 Score=62.39 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCC
Q 005266 66 SHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGD 145 (705)
Q Consensus 66 thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d 145 (705)
.+|++++.+.+... .+.+.++.+|...|+...|...++++++..+ .+.+ +++.+|.++...++
T Consensus 4 ~~~~~~l~~~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-------~~~~---~~~~la~~~~~~~~ 66 (135)
T TIGR02552 4 ATLKDLLGLDSEQL-------EQIYALAYNLYQQGRYDEALKLFQLLAAYDP-------YNSR---YWLGLAACCQMLKE 66 (135)
T ss_pred hhHHHHHcCChhhH-------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-------CcHH---HHHHHHHHHHHHHH
Confidence 36777766655554 6678899999999999999999999888766 4444 67788999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHH
Q 005266 146 YQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRV 200 (705)
Q Consensus 146 ~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~ 200 (705)
+..|+..++.+... ++....+++.++.++..+ .+++.+.+.++++-++
T Consensus 67 ~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 67 YEEAIDAYALAAAL----DPDDPRPYFHAAECLLAL---GEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHh
Confidence 99999999997776 677888889999988877 7788888777666554
No 113
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.51 E-value=0.0019 Score=60.37 Aligned_cols=100 Identities=22% Similarity=0.117 Sum_probs=85.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHH
Q 005266 437 MLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLH 516 (705)
Q Consensus 437 ~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al 516 (705)
-+-|..+.--|++++|++.|.+|+.+.+. ++.+|
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~----------------------------------------------raSay 80 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPE----------------------------------------------RASAY 80 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhccc----------------------------------------------chHhh
Confidence 36677888889999999999998876543 35688
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 005266 517 FAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 517 ~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LAr 585 (705)
++.+.++-.+|+.++|+.-|.+|+.++ .+..+-.++++..-|.+|.-+|+.+.|+.-+++|-+|-.
T Consensus 81 NNRAQa~RLq~~~e~ALdDLn~AleLa---g~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 81 NNRAQALRLQGDDEEALDDLNKALELA---GDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred ccHHHHHHHcCChHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 888888889999999999999999997 345788999999999999999999999999998877643
No 114
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.51 E-value=0.00089 Score=73.72 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCCh
Q 005266 437 MLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 486 (705)
Q Consensus 437 ~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~ 486 (705)
...|.-+...|++++|+.+|.+|+++.++.. .+..++|.++...|++
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~---~a~~~~a~~~~~~g~~ 52 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNA---ELYADRAQANIKLGNF 52 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCH
Confidence 3568888999999999999999998866532 2233444444444443
No 115
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.49 E-value=0.21 Score=57.66 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHH
Q 005266 132 FNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQ 196 (705)
Q Consensus 132 f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~ 196 (705)
+.+-.++++...|+++.|++.|++.... .-+.+.++-..+.+++.| ...++++.++..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~ll~kL---g~~~eA~~~y~~ 63 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ----ILDKLAVLEKRAELLLKL---GRKEEAEKIYRE 63 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh----CCCHHHHHHHHHHHHHHc---CCHHHHHHHHHH
Confidence 3444688899999999999999885543 667788888889999888 777788777633
No 116
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0011 Score=69.67 Aligned_cols=120 Identities=22% Similarity=0.176 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhH
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 512 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~q 512 (705)
|.-+-.-|-=++..++|.+|+..|.+|+.+++.+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---------------------------------------------- 114 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---------------------------------------------- 114 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc----------------------------------------------
Confidence 3344467999999999999999999999986542
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
|.+|.+.+-+|.+.|.|+.|...+..|+.+- .--+-+|.+||-+|+.+|++++|.+.|++||.+ |+..
T Consensus 115 AVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-------p~yskay~RLG~A~~~~gk~~~A~~aykKaLel-----dP~N 182 (304)
T KOG0553|consen 115 AVYYCNRAAAYSKLGEYEDAVKDCESALSID-------PHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL-----DPDN 182 (304)
T ss_pred chHHHHHHHHHHHhcchHHHHHHHHHHHhcC-------hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-----CCCc
Confidence 4466667777778889999999999887772 123468889999999999999999999999877 3333
Q ss_pred HHHHHHHHHHHHHHcCCch
Q 005266 593 QIWALSVLTALYQQLGDRG 611 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~ 611 (705)
..| -..|+.+....+++.
T Consensus 183 e~~-K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 183 ESY-KSNLKIAEQKLNEPK 200 (304)
T ss_pred HHH-HHHHHHHHHHhcCCC
Confidence 322 234455555555554
No 117
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.44 E-value=0.014 Score=60.92 Aligned_cols=140 Identities=9% Similarity=0.063 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhC---------------ChhhHHHHHHhhccc
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG---------------DAESSSQAIDLIGPV 499 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~g---------------d~d~~~~ALeli~~~ 499 (705)
+.+.+|..+...+++++|...|++.+++.++......+..-.|+++...+ |......|++.++.+
T Consensus 71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l 150 (243)
T PRK10866 71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL 150 (243)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999987767777777777653322 222255666666654
Q ss_pred -cccCCccch---------hhhH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCC
Q 005266 500 -YQMKDTING---------VREE-ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH 568 (705)
Q Consensus 500 -~~~~~~~~g---------~~~q-A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg 568 (705)
-.+|++... ++++ |.--+..|-.+++.|+|..|...++..++-. .+....-.+|..|+.+|..+|
T Consensus 151 i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y----p~t~~~~eal~~l~~ay~~lg 226 (243)
T PRK10866 151 VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY----PDTQATRDALPLMENAYRQLQ 226 (243)
T ss_pred HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC----CCCchHHHHHHHHHHHHHHcC
Confidence 345766211 1112 3344677888999999999999999998775 244567789999999999999
Q ss_pred ChHHHHHHHH
Q 005266 569 DTVQAREILR 578 (705)
Q Consensus 569 ~~~qA~~~~~ 578 (705)
..++|.+...
T Consensus 227 ~~~~a~~~~~ 236 (243)
T PRK10866 227 LNAQADKVAK 236 (243)
T ss_pred ChHHHHHHHH
Confidence 9999887553
No 118
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.42 E-value=0.029 Score=56.72 Aligned_cols=174 Identities=14% Similarity=0.082 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhh
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
.+...+-.|.-++..|++++|...|.......+.......+..++|.++...|+++......+.+-. .+|++..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~---- 77 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPK---- 77 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TT----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcc----
Confidence 4567788999999999999999999999988888777778899999999999998774444443333 3565543
Q ss_pred HHHHHHHHHHHHHHhcC-----------HHHHHHHHHHHHHHHHhcccC-----------HHHHHHHHHHHHHHHHHCCC
Q 005266 512 EASLHFAYGLLLMRQQD-----------FQEARNRLAKGLQIAHNHMGN-----------LQLVSQYLTILGNLALALHD 569 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~-----------~~eA~~~L~eAL~la~~e~gn-----------~~l~a~aL~~LG~i~~~lg~ 569 (705)
...++|..|.+++...+ ..+|+..+++-++.. -...- ....+.--..+|..|+..|.
T Consensus 78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGK 156 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 24689999998877543 336777777665543 11100 12334444567899999999
Q ss_pred hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHH
Q 005266 570 TVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEME 615 (705)
Q Consensus 570 ~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e 615 (705)
+..|...++..+ ++-+|....-.++..|.+.|...|....|..
T Consensus 157 y~aA~~r~~~v~---~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 157 YKAAIIRFQYVI---ENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHH---HHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHH---HHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 998888877755 5667777777899999999999999884443
No 119
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.38 E-value=0.0063 Score=56.56 Aligned_cols=100 Identities=14% Similarity=0.000 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 594 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~ 594 (705)
++|..|+++-..|+.++|..++++|+... ... .....++..+|..+..+|++++|..+++.++. +.+|...-.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g---L~~-~~~~~a~i~lastlr~LG~~deA~~~L~~~~~---~~p~~~~~~ 75 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAG---LSG-ADRRRALIQLASTLRNLGRYDEALALLEEALE---EFPDDELNA 75 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCccccH
Confidence 68899999999999999999999998753 222 34446899999999999999999999998864 334433334
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005266 595 WALSVLTALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 595 ~al~~L~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
.....++.+....|++++|.+.+....
T Consensus 76 ~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 76 ALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444556778899999999999876544
No 120
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.34 E-value=0.52 Score=54.54 Aligned_cols=430 Identities=14% Similarity=0.130 Sum_probs=222.8
Q ss_pred hhhcccHhHHhHHHHHHhccCC-----------------CCChHHHHHHHH----------HHHHH-HHHhhcchHHHHH
Q 005266 15 HENKGEIGKAVKCLEAICQSHV-----------------SFLPIIEVKTRL----------RISTL-LLKHTHNVNHAKS 66 (705)
Q Consensus 15 ~~~~~~i~~ai~CLea~~~~~~-----------------~~~p~~EA~~rL----------rla~i-L~e~T~N~~~A~t 66 (705)
-|+.-++..||||+..+++..+ .+.|..|.+-+| .+|=+ =....+|+..|..
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555699999999999996433 134555543322 11111 1223456666666
Q ss_pred HHHHHHHHhhcCCchhhhhhhHHHH-HHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCC
Q 005266 67 HLERSQLLLKAIPSCFELKCRTFSL-LSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGD 145 (705)
Q Consensus 67 hLeka~~l~~~i~~~~dlK~~~~~l-LA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d 145 (705)
.++---.....++.-.+..+.-..+ =.++..+.|....+.+.+.+ .+..+ .=-.+|....|+++...+.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~-~e~~i---------~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD-NEKQI---------VDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh-hhhHH---------HHHHHHhhhHHHHHHHHhh
Confidence 6543221111224344444332222 23444555554444333333 22222 2244578889999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH-HhcccCChhHHHHHHHHhHHHhhhcCcccccccc---cchhhhhH
Q 005266 146 YQSSISALQSGYVCATEISYPDLQMFFATAILHV-HLMQWDDENSVLRSINQCDRVWESIDPNRRGQCL---GLLFYNEL 221 (705)
Q Consensus 146 ~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~-~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~---G~~~~~E~ 221 (705)
+..|+..+..+... ++++..+.-.+-.++- .+ +....+...+....+.. + |..++ ++++
T Consensus 235 lEeA~~~y~~Ll~r----nPdn~~Yy~~l~~~lgk~~---d~~~~lk~ly~~ls~~y----~--r~e~p~Rlplsv---- 297 (700)
T KOG1156|consen 235 LEEAVKVYRRLLER----NPDNLDYYEGLEKALGKIK---DMLEALKALYAILSEKY----P--RHECPRRLPLSV---- 297 (700)
T ss_pred HHhHHHHHHHHHhh----CchhHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhcC----c--ccccchhccHHH----
Confidence 99999999999987 9999999888877774 22 33333434444333322 1 11111 1111
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHH-HHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccC
Q 005266 222 LHIFYRLRICDYKNAAHHVDNLDAAMKADKQK-MQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLED 300 (705)
Q Consensus 222 l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk-~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~ 300 (705)
++-...-..|+.+|+..++| +|. +..-|. +|.+ . + ++..-+++++-+ ..
T Consensus 298 ------------l~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~----SLyk--~-p-------~k~~~le~Lvt~-y~ 347 (700)
T KOG1156|consen 298 ------------LNGEELKEIVDKYLRPLLSKGVPS---VFKDLR----SLYK--D-P-------EKVAFLEKLVTS-YQ 347 (700)
T ss_pred ------------hCcchhHHHHHHHHHHHhhcCCCc---hhhhhH----HHHh--c-h-------hHhHHHHHHHHH-HH
Confidence 01011122356666544444 122 111122 2222 0 0 122233444433 00
Q ss_pred CCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHh
Q 005266 301 SSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLK 380 (705)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~ 380 (705)
..+++.-. +.. .+.++ -.+|.++-| +++.++-++-..|++++|+.|++.|+.+
T Consensus 348 ~~L~~~~~----f~~----~D~~~---~E~PttllW---------t~y~laqh~D~~g~~~~A~~yId~AIdH------- 400 (700)
T KOG1156|consen 348 HSLSGTGM----FNF----LDDGK---QEPPTTLLW---------TLYFLAQHYDKLGDYEVALEYIDLAIDH------- 400 (700)
T ss_pred hhcccccC----CCc----ccccc---cCCchHHHH---------HHHHHHHHHHHcccHHHHHHHHHHHhcc-------
Confidence 01111000 000 01111 112233434 4667788999999999999999999997
Q ss_pred cCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005266 381 LGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAA 460 (705)
Q Consensus 381 ~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al 460 (705)
+|++. ..| ++-|-++.-.|++++|.+.+.+|-
T Consensus 401 ---TPTli------------Ely---------------------------------~~KaRI~kH~G~l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 401 ---TPTLI------------ELY---------------------------------LVKARIFKHAGLLDEAAAWLDEAQ 432 (700)
T ss_pred ---CchHH------------HHH---------------------------------HHHHHHHHhcCChHHHHHHHHHHH
Confidence 44421 222 144666677889999999999988
Q ss_pred HhcCChhHHHHHHHHH--HHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHH--HHHHHHhcCHHHHHHHH
Q 005266 461 KITESKSMQAMCHAYA--AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAY--GLLLMRQQDFQEARNRL 536 (705)
Q Consensus 461 ~l~~~~~g~a~a~~nl--alv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~l--G~~~~~~g~~~eA~~~L 536 (705)
.++.... ..|. |--.++.++-++....+..|...+. |-.-.+.+.-..||.+ |.++.++|++.+|+..+
T Consensus 433 elD~aDR-----~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 433 ELDTADR-----AINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred hccchhH-----HHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 8865533 2221 2222233444556666666666533 1111122233456554 89999999999999999
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHH
Q 005266 537 AKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 594 (705)
Q Consensus 537 ~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~ 594 (705)
..--+.+ .+..+.|.--.++ ..+.|- ...|-.-+.+...+.+.+.-.
T Consensus 506 h~i~k~~-~~~~~dqfDfhty------c~rk~t----lrsYv~ll~~~d~L~~~p~y~ 552 (700)
T KOG1156|consen 506 HEIEKHY-KTWSEDQFDFHTY------CMRKGT----LRSYVELLEWEDNLRSSPYYL 552 (700)
T ss_pred hhHHHHH-HHHhhhhhhHHHH------HHhcCc----HHHHHHHHHHHHhhccChHHH
Confidence 9888877 3455545433221 123332 234444455555555554333
No 121
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.30 E-value=0.0029 Score=69.63 Aligned_cols=109 Identities=13% Similarity=0.018 Sum_probs=87.6
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhH
Q 005266 51 STLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSC 130 (705)
Q Consensus 51 a~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~ 130 (705)
|.-+|. -+|++.|..+|++|+.+.+..+ .+++.+|.+|.+.|.+..|...+++++++.+ .+..
T Consensus 9 a~~a~~-~~~~~~Ai~~~~~Al~~~P~~~-------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-------~~~~-- 71 (356)
T PLN03088 9 AKEAFV-DDDFALAVDLYTQAIDLDPNNA-------ELYADRAQANIKLGNFTEAVADANKAIELDP-------SLAK-- 71 (356)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------CCHH--
Confidence 444444 4799999999999999888876 7889999999999999999999999999987 3332
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 005266 131 NFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHL 181 (705)
Q Consensus 131 ~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L 181 (705)
.++.+|.++...|+|..|+..|+.+..+ ++....+...+..+.-.+
T Consensus 72 -a~~~lg~~~~~lg~~~eA~~~~~~al~l----~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 72 -AYLRKGTACMKLEEYQTAKAALEKGASL----APGDSRFTKLIKECDEKI 117 (356)
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999887 555555555555554444
No 122
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.28 E-value=0.78 Score=55.48 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=61.5
Q ss_pred HHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHH
Q 005266 54 LLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFN 133 (705)
Q Consensus 54 L~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~ 133 (705)
+-.-.+|...|.+||=+++.++.... .++.-|..+|...-+...|+...+||-+++..|.+. |.
T Consensus 467 ~~~~rK~~~~al~ali~alrld~~~a-------paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea-----aa---- 530 (1238)
T KOG1127|consen 467 LGCMRKNSALALHALIRALRLDVSLA-------PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA-----AA---- 530 (1238)
T ss_pred HHHhhhhHHHHHHHHHHHHhcccchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh-----HH----
Confidence 34456889999999999999999988 888999999999887788999999999999865332 21
Q ss_pred HHHHHHHhhcCCHHHHHHH
Q 005266 134 SQLANAFIIEGDYQSSISA 152 (705)
Q Consensus 134 ~~lA~~~~~~~d~~~A~~~ 152 (705)
-.++.|....+|+.|.++
T Consensus 531 -a~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 531 -ASADTYAEESTWEEAFEI 548 (1238)
T ss_pred -HHHHHhhccccHHHHHHH
Confidence 134455555555555554
No 123
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.21 Score=56.51 Aligned_cols=205 Identities=17% Similarity=0.150 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccc
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 507 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~ 507 (705)
.+.-.--+|..++...+|+.|+.||..++.+.++ ..=..|.+-+|+..|.+.. ++.|++--++. +..-+.
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~----it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~kl- 296 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELATD----ITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKL- 296 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhh----hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHH-
Confidence 3445557899999999999999999999999733 1125677888888888766 56666643332 111111
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHHHC
Q 005266 508 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNH--------------------MGNLQLVSQYLTILGNLALAL 567 (705)
Q Consensus 508 g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e--------------------~gn~~l~a~aL~~LG~i~~~l 567 (705)
+ +.++-..|.++...++++.|+.+|.++|.-.++. .-++.. +.-...=|.-++..
T Consensus 297 -I---ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 297 -I---AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKK 371 (539)
T ss_pred -H---HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhc
Confidence 1 3455557888888899999999999988775320 112222 33334458899999
Q ss_pred CChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHH--------------------HHHHHHHHHH
Q 005266 568 HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND--------------------EYRRKKLDEL 627 (705)
Q Consensus 568 g~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~--------------------~~~~~~~~~l 627 (705)
||+..|.++|++|+. ++-.| ...+.+.+-.|-.+|++..|..-. ..+++..++-
T Consensus 372 gdy~~Av~~YteAIk--r~P~D----a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIK--RDPED----ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred cCHHHHHHHHHHHHh--cCCch----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999654 44444 344445566777788887777622 2233333333
Q ss_pred HHHHHHhh-cchhhHHHHhhhccchhc
Q 005266 628 QKRLADAY-SSIHHIELISKVKLEVQQ 653 (705)
Q Consensus 628 ~~~~~~a~-~~~~h~~l~~~~~~~~~~ 653 (705)
..-+.+|. -.|.-.++++|++=-+.+
T Consensus 446 leay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 446 LEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 34444444 457778899988877764
No 124
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.21 E-value=0.45 Score=51.35 Aligned_cols=102 Identities=13% Similarity=0.094 Sum_probs=84.9
Q ss_pred ChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccc
Q 005266 39 LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSS 118 (705)
Q Consensus 39 ~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~ 118 (705)
-.-.|+.-||.+|+-||.. +.+..|.||+..|..+.+.+ |.+.|-=|.+|.-+|...++.+=|.+-+++-+
T Consensus 33 ~~~advekhlElGk~lla~-~Q~sDALt~yHaAve~dp~~-------Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp- 103 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLAR-GQLSDALTHYHAAVEGDPNN-------YQAIFRRATVYLAMGKSKAALQDLSRVLELKP- 103 (504)
T ss_pred CCHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHcCCchh-------HHHHHHHHHHHhhhcCCccchhhHHHHHhcCc-
Confidence 3457888999999999864 67899999999998877665 48888899999999999999888888888877
Q ss_pred cccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005266 119 ASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYV 158 (705)
Q Consensus 119 ~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~ 158 (705)
+ .+.-+.|++.++..+|.+..|+.-+.....
T Consensus 104 ------D---F~~ARiQRg~vllK~Gele~A~~DF~~vl~ 134 (504)
T KOG0624|consen 104 ------D---FMAARIQRGVVLLKQGELEQAEADFDQVLQ 134 (504)
T ss_pred ------c---HHHHHHHhchhhhhcccHHHHHHHHHHHHh
Confidence 2 345789999999999999988886666544
No 125
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.004 Score=70.46 Aligned_cols=216 Identities=13% Similarity=0.065 Sum_probs=147.2
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhh---ccc
Q 005266 423 GFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLI---GPV 499 (705)
Q Consensus 423 ~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli---~~~ 499 (705)
|-..-++|..+.+-..||....-.++-..|+..+++|+++.+++- .++.+||+.|.+.|.-.+.-+.|+-. .|-
T Consensus 309 EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl---eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~ 385 (579)
T KOG1125|consen 309 EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL---EALMALAVSYTNEGLQNQALKMLDKWIRNKPK 385 (579)
T ss_pred HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH---HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc
Confidence 334446778888888999999998888889999999999988743 23556666666644322211111100 000
Q ss_pred ----------cc------cCCc---------------cchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Q 005266 500 ----------YQ------MKDT---------------INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 548 (705)
Q Consensus 500 ----------~~------~~~~---------------~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g 548 (705)
.. ++++ ..+.-..+.....+|+.+...|+|+.|..+|+.||+. + =.
T Consensus 386 y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v-~--Pn 462 (579)
T KOG1125|consen 386 YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV-K--PN 462 (579)
T ss_pred chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-C--Cc
Confidence 00 0000 0110013568889999999999999999999999988 2 22
Q ss_pred CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Q 005266 549 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 628 (705)
Q Consensus 549 n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~ 628 (705)
| . ..++.||-........++|...|.+|+.| .++-+.+-..||--+.-.|.+.+|..++-.+..+-..
T Consensus 463 d-~---~lWNRLGAtLAN~~~s~EAIsAY~rALqL------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k-- 530 (579)
T KOG1125|consen 463 D-Y---LLWNRLGATLANGNRSEEAISAYNRALQL------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK-- 530 (579)
T ss_pred h-H---HHHHHhhHHhcCCcccHHHHHHHHHHHhc------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc--
Confidence 3 2 37899999999999999999999999988 5555666678999999999999999999888876552
Q ss_pred HHHHHhhcchh-hHHHHhhhccchhccchhh
Q 005266 629 KRLADAYSSIH-HIELISKVKLEVQQFHELD 658 (705)
Q Consensus 629 ~~~~~a~~~~~-h~~l~~~~~~~~~~~~~~~ 658 (705)
-......|+ ...+.+-+|+-+.-+...|
T Consensus 531 --s~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 531 --SRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred --ccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 011112222 2456777776555554444
No 126
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.20 E-value=0.0024 Score=54.86 Aligned_cols=83 Identities=18% Similarity=0.250 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHH
Q 005266 446 VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR 525 (705)
Q Consensus 446 ~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~ 525 (705)
+|++++|+.+|++.+...+... ......++|.++...|+++.+...+.. .+ ..++ .....+..|.+++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~-------~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPS-------NPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHC-------HHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCC-------CHHHHHHHHHHHHH
Confidence 6899999999999999988543 556778899999999987664444432 11 1121 13466677999999
Q ss_pred hcCHHHHHHHHHHH
Q 005266 526 QQDFQEARNRLAKG 539 (705)
Q Consensus 526 ~g~~~eA~~~L~eA 539 (705)
.|++++|+..|.+|
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 99999999999875
No 127
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.20 E-value=0.0057 Score=59.27 Aligned_cols=114 Identities=12% Similarity=0.011 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
-...|.+|..++..|++++|...++-...+. ...+..+..||-++..+|++++|.+.|..|..+.. .|
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--dd--- 102 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DA--- 102 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CC---
Confidence 4578889999999999999999999665553 34556899999999999999999999999998873 44
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhcc
Q 005266 593 QIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHHIELISKVKL 649 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~~~~h~~l~~~~~~ 649 (705)
......+|..+...|+.+.|.+.|..+..... ..|+|..|-++..-
T Consensus 103 -p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~----------~~~~~~~l~~~A~~ 148 (157)
T PRK15363 103 -PQAPWAAAECYLACDNVCYAIKALKAVVRICG----------EVSEHQILRQRAEK 148 (157)
T ss_pred -chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc----------cChhHHHHHHHHHH
Confidence 35566789999999999999999988877653 45777777665543
No 128
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.18 E-value=0.0013 Score=56.41 Aligned_cols=82 Identities=26% Similarity=0.288 Sum_probs=63.4
Q ss_pred hcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHH
Q 005266 58 THNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLA 137 (705)
Q Consensus 58 T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA 137 (705)
.+|++.|..+++|++...+..+ .....+.||.||++.|+...|-.++++ .+..+ .+.+ ..+.+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-----~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-------~~~~---~~~l~a 65 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-----NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-------SNPD---IHYLLA 65 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-----HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-------CHHH---HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-----hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-------CCHH---HHHHHH
Confidence 5789999999999988877532 224566689999999999999988888 55554 3333 555669
Q ss_pred HHHhhcCCHHHHHHHHHH
Q 005266 138 NAFIIEGDYQSSISALQS 155 (705)
Q Consensus 138 ~~~~~~~d~~~A~~~L~~ 155 (705)
.++...|+|+.|++.|++
T Consensus 66 ~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 999999999999999986
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.17 E-value=0.0054 Score=68.26 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=99.1
Q ss_pred HHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHH
Q 005266 54 LLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFN 133 (705)
Q Consensus 54 L~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~ 133 (705)
++..|.+++.|...|++. .+..| +....||++|...+....|-..+.+++...++ .+..+
T Consensus 178 ~l~~t~~~~~ai~lle~L---~~~~p-------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~----------d~~LL 237 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKL---RERDP-------EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ----------DSELL 237 (395)
T ss_pred HHhhcccHHHHHHHHHHH---HhcCC-------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC----------CHHHH
Confidence 457789999999999973 34556 78899999999999888888899999976653 25577
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHh
Q 005266 134 SQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQC 197 (705)
Q Consensus 134 ~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~ 197 (705)
...|..+...++++.|+...++.+.+ .+...+..+.|+++|+.+ .+++++.-++|.|
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~l----sP~~f~~W~~La~~Yi~~---~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVEL----SPSEFETWYQLAECYIQL---GDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHhc---CCHHHHHHHHhcC
Confidence 78899999999999999999887776 788999999999999999 8898898888766
No 130
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.16 E-value=0.0018 Score=52.56 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHH
Q 005266 437 MLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLH 516 (705)
Q Consensus 437 ~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al 516 (705)
+.+|..+...|++++|+.+|+++++..++ -+.++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~----------------------------------------------~~~a~ 34 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPD----------------------------------------------NPEAW 34 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTT----------------------------------------------HHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCC----------------------------------------------CHHHH
Confidence 35788899999999999999987765432 14589
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 517 FAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 517 ~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
+.+|.++..+|++++|...++++++..
T Consensus 35 ~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 35 YLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999998773
No 131
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.15 E-value=0.011 Score=61.26 Aligned_cols=91 Identities=20% Similarity=0.112 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
+.+|..+|.++.+.|++++|...+.+|+++. .+++ .+++.||-.+.-.||.+.|+..+.++..... .|
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~---~~~p----~~~nNlgms~~L~gd~~~A~~lll~a~l~~~--ad--- 201 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELA---PNEP----SIANNLGMSLLLRGDLEDAETLLLPAYLSPA--AD--- 201 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhc---cCCc----hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC--Cc---
Confidence 5588999999999999999999999999996 2332 4778899999999999999999988865432 12
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHH
Q 005266 593 QIWALSVLTALYQQLGDRGNEMEN 616 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~A~e~ 616 (705)
.-+..+|..+-...||++.|.+.
T Consensus 202 -~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 202 -SRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred -hHHHHHHHHHHhhcCChHHHHhh
Confidence 23445778888889999888763
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.13 E-value=0.043 Score=55.46 Aligned_cols=136 Identities=14% Similarity=0.114 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhC------Chhh--HHHHHHhhcccc-ccCCc
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG------DAES--SSQAIDLIGPVY-QMKDT 505 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~g------d~d~--~~~ALeli~~~~-~~~~~ 505 (705)
+...+|..+...|++++|...|++-++..++..-...+....|+++.... +.|. ...|+..++.+. ++|++
T Consensus 44 A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 44 AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 34477888999999999999999999999886666677777777765522 2222 677777776652 45776
Q ss_pred cchh---------hh-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHH
Q 005266 506 INGV---------RE-EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAR 574 (705)
Q Consensus 506 ~~g~---------~~-qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~ 574 (705)
.... +. .|.--+..|..++..|.|..|...++..++-. -++...-.++..|+..|..+|....|.
T Consensus 124 ~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 124 EYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3211 11 14455778999999999999999999998876 244666779999999999999988554
No 133
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.036 Score=59.16 Aligned_cols=201 Identities=15% Similarity=0.106 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccch
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES--KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTING 508 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~--~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g 508 (705)
..-.+|..||..+.++|..|.|+...+. +-..++ ..-+..+..-+|.=|...|=+|..+.....+-....|-
T Consensus 67 ~t~e~~ltLGnLfRsRGEvDRAIRiHQ~-L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa----- 140 (389)
T COG2956 67 ETFEAHLTLGNLFRSRGEVDRAIRIHQT-LLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFA----- 140 (389)
T ss_pred hhhHHHHHHHHHHHhcchHHHHHHHHHH-HhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhh-----
Confidence 4445677999999999999999998875 444444 34456677777777766555444333333222221111
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcC
Q 005266 509 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 588 (705)
Q Consensus 509 ~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~g 588 (705)
-.++-.+-.+|..+.+++.|.+.-++=.++. . ..+.--.|+++--|+.-+....+.+.|...+.+|++-.++
T Consensus 141 ----~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-- 212 (389)
T COG2956 141 ----EGALQQLLNIYQATREWEKAIDVAERLVKLG-G-QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-- 212 (389)
T ss_pred ----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-C-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc--
Confidence 2367777788999999999999998777775 3 4455788999999999999999999999999999876444
Q ss_pred ChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH----HHHHHHHHHHHhhcc-hhhHHHHhhhcc
Q 005266 589 DIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK----KLDELQKRLADAYSS-IHHIELISKVKL 649 (705)
Q Consensus 589 D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~----~~~~l~~~~~~a~~~-~~h~~l~~~~~~ 649 (705)
.+.+...||+++...|++++|.+.++...+ ..-.+.....+||.. .--.+.+.|++-
T Consensus 213 ----cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 213 ----CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred ----ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 356778899999999999999999987654 344556666677632 222334444443
No 134
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.09 E-value=0.0037 Score=72.36 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCc
Q 005266 430 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 430 ~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~ 505 (705)
+.++..+.++|++.+...+|+.|-..+. ..+++ |....|....+.+++.+ ++++++ +. |.
T Consensus 454 ~~d~~lyc~LGDv~~d~s~yEkawElsn-------~~sar--A~r~~~~~~~~~~~fs~~~~hle~sl~-~n-----pl- 517 (777)
T KOG1128|consen 454 DPDPRLYCLLGDVLHDPSLYEKAWELSN-------YISAR--AQRSLALLILSNKDFSEADKHLERSLE-IN-----PL- 517 (777)
T ss_pred CCcchhHHHhhhhccChHHHHHHHHHhh-------hhhHH--HHHhhccccccchhHHHHHHHHHHHhh-cC-----cc-
Confidence 4668888888888887766666655544 34444 34555555555567666 455555 22 22
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LAr 585 (705)
+-..||.+|.+..+.++++.|..+|+.++.+. -+| +.+.+.++..|...|+-.+|...+.+|+
T Consensus 518 ------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~---Pd~----~eaWnNls~ayi~~~~k~ra~~~l~EAl---- 580 (777)
T KOG1128|consen 518 ------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE---PDN----AEAWNNLSTAYIRLKKKKRAFRKLKEAL---- 580 (777)
T ss_pred ------chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC---CCc----hhhhhhhhHHHHHHhhhHHHHHHHHHHh----
Confidence 45689999999999999999999999998884 333 3589999999999999999998888876
Q ss_pred HcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 586 KLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 586 k~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
|..-.++++|=...| +-...|..+.|..++..-..+.+
T Consensus 581 Kcn~~~w~iWENyml--vsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 581 KCNYQHWQIWENYML--VSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hcCCCCCeeeechhh--hhhhcccHHHHHHHHHHHHHhhh
Confidence 455667788855443 56678999999888887776665
No 135
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.03 E-value=1 Score=52.27 Aligned_cols=151 Identities=16% Similarity=0.112 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh--hCChhh----HHHHHHhhccccccCCcc
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC--IGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~--~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
..+.+++|+++.++++.+.|...|.+-++..+... -+|+-++-+. .|..-. ++++.- ++|++
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-----pLWllLakleEk~~~~~rAR~ildrarl------kNPk~- 752 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-----PLWLLLAKLEEKDGQLVRARSILDRARL------KNPKN- 752 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc-----hHHHHHHHHHHHhcchhhHHHHHHHHHh------cCCCc-
Confidence 56667778888888888888777777777666533 3444333333 222111 222211 34442
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---------------------------hcccCHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH---------------------------NHMGNLQLVSQYLTI 559 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~---------------------------~e~gn~~l~a~aL~~ 559 (705)
+..|.-.-..-++.|..++|.....+||+-+- +-.+|++ +|..
T Consensus 753 ------~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dph----Vlla 822 (913)
T KOG0495|consen 753 ------ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH----VLLA 822 (913)
T ss_pred ------chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCch----hHHH
Confidence 22333333333445555555555555554431 0123443 4567
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCch
Q 005266 560 LGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRG 611 (705)
Q Consensus 560 LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~ 611 (705)
+|-.|....+.+.|++.+.+|+......|| +|+.. -+.+...|.-+
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d~d~GD----~wa~f--ykfel~hG~ee 868 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKDPDNGD----AWAWF--YKFELRHGTEE 868 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCccch----HHHHH--HHHHHHhCCHH
Confidence 888899999999999999999999888888 66653 34555566433
No 136
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.00 E-value=0.072 Score=61.31 Aligned_cols=166 Identities=14% Similarity=0.052 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh-H---HHHHHhhccccccCCccchh
Q 005266 434 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES-S---SQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 434 ~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~-~---~~ALeli~~~~~~~~~~~g~ 509 (705)
.--.++|.+..+..+|+||+.+|+.|+++.+++. ..+..++++.+..||++. . .+-|. ..|+
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~---qilrDlslLQ~QmRd~~~~~~tr~~LLq------l~~~----- 141 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL---QILRDLSLLQIQMRDYEGYLETRNQLLQ------LRPS----- 141 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHHhhhhHHHHHHHHHH------hhhh-----
Confidence 3346899999999999999999999999988754 235667777777788766 2 22233 1233
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHH--HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ--LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 587 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~--l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~ 587 (705)
+=+.|+..+.+++..|++..|...+++-.+..+ ..-... -.+.++...-.++...|..++|.+.+. ..-
T Consensus 142 --~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~------~~e 212 (700)
T KOG1156|consen 142 --QRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL------DNE 212 (700)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH------hhh
Confidence 345899999999999999999999998877753 222323 234445555677777777666655443 223
Q ss_pred CChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 588 YDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 588 gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
+++....-....-++++...|+.++|...+.....
T Consensus 213 ~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 213 KQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred hHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 33333444445567788999999999877655443
No 137
>PLN02789 farnesyltranstransferase
Probab=96.99 E-value=0.61 Score=50.72 Aligned_cols=215 Identities=13% Similarity=0.044 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 005266 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (705)
Q Consensus 343 ~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~ 422 (705)
.+.-|+-.+ +...+..++|...+.+++.. .|. +-..|.-+-.+. .. |.....-+|...
T Consensus 38 ~a~~~~ra~--l~~~e~serAL~lt~~aI~l----------nP~-------~ytaW~~R~~iL-~~--L~~~l~eeL~~~ 95 (320)
T PLN02789 38 EAMDYFRAV--YASDERSPRALDLTADVIRL----------NPG-------NYTVWHFRRLCL-EA--LDADLEEELDFA 95 (320)
T ss_pred HHHHHHHHH--HHcCCCCHHHHHHHHHHHHH----------Cch-------hHHHHHHHHHHH-HH--cchhHHHHHHHH
Confidence 355555555 34556778888888888775 122 246775333221 11 110111122222
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhh
Q 005266 423 GFVEAQEACESMIEMLRGQYAHSVGCY--SEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLI 496 (705)
Q Consensus 423 ~~~~a~~~~~a~~~~llG~~~~~~g~~--~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli 496 (705)
+-+...++...++.+-.|.+....|+. ++++.++.+++++.+.+. .+-.+-+.+....|++++ +.++++
T Consensus 96 ~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy---~AW~~R~w~l~~l~~~~eeL~~~~~~I~-- 170 (320)
T PLN02789 96 EDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY---HAWSHRQWVLRTLGGWEDELEYCHQLLE-- 170 (320)
T ss_pred HHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhHHHHHHHHHHHHH--
Confidence 333344556677888889999888874 678899999999988754 123333555555666655 566555
Q ss_pred ccccccCCccchhhhHHHHHHHHHHHHHHh---cCH----HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH---
Q 005266 497 GPVYQMKDTINGVREEASLHFAYGLLLMRQ---QDF----QEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA--- 566 (705)
Q Consensus 497 ~~~~~~~~~~~g~~~qA~al~~lG~~~~~~---g~~----~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~--- 566 (705)
..|.+ ..+|+..|.+.... |++ ++++.+..+++.+. - .| ..+++.+|.++..
T Consensus 171 ----~d~~N-------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P--~N----~SaW~Yl~~ll~~~~~ 232 (320)
T PLN02789 171 ----EDVRN-------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-P--RN----ESPWRYLRGLFKDDKE 232 (320)
T ss_pred ----HCCCc-------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-C--CC----cCHHHHHHHHHhcCCc
Confidence 22332 45888888887665 333 47888888898884 2 23 1378888888888
Q ss_pred -CCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 005266 567 -LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 608 (705)
Q Consensus 567 -lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~G 608 (705)
++...+|.+.+..++.. .+.-..++..|.++|....
T Consensus 233 ~l~~~~~~~~~~~~~~~~------~~~s~~al~~l~d~~~~~~ 269 (320)
T PLN02789 233 ALVSDPEVSSVCLEVLSK------DSNHVFALSDLLDLLCEGL 269 (320)
T ss_pred ccccchhHHHHHHHhhcc------cCCcHHHHHHHHHHHHhhh
Confidence 45567787777776551 2233578888999998643
No 138
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.95 E-value=0.0097 Score=61.66 Aligned_cols=125 Identities=18% Similarity=0.165 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchh
Q 005266 434 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 434 ~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~ 509 (705)
.++..+|......|+|.+|+.+|.+|.++.++.. .+..-+|.+|.+.|+++. +.+|+++...
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~---~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~----------- 166 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW---EAWNLLGAALDQLGRFDEARRAYRQALELAPN----------- 166 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh---hhhhHHHHHHHHccChhHHHHHHHHHHHhccC-----------
Confidence 3444589999999999999999999999877633 224555788888899877 7888885433
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSL 581 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al 581 (705)
......++|..+...|++..|..++..+-... ..|.+ +...|.-+.-..|+.++|++...+=+
T Consensus 167 --~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad~~----v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 167 --EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AADSR----VRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred --CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCchH----HHHHHHHHHhhcCChHHHHhhccccc
Confidence 25588999999999999999999999885443 23333 34456666778899999888776544
No 139
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.93 E-value=0.3 Score=53.60 Aligned_cols=308 Identities=16% Similarity=0.143 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHH-HHHHHHHcCCChhHHHHHHHHHhhccc
Q 005266 41 IIEVKTRLRISTLLLKH-THNVNHAKSHLERSQLLLKAIPSCFELKCRTFSL-LSQCYHLVGAIPPQKLILYKALDLTSS 118 (705)
Q Consensus 41 ~~EA~~rLrla~iL~e~-T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~l-LA~~y~~~~~~~~ak~~l~kai~~~~~ 118 (705)
+.-.|+|.++=.-|... -+++..|+-++.|+..--+. | .++++ =|+.=.++|+...+-.++.++-+....
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p-------~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~ 150 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-P-------VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD 150 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-h-------HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC
Confidence 44555555555555544 36899999999997654333 3 44444 468888899998888899998888542
Q ss_pred cccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhH
Q 005266 119 ASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCD 198 (705)
Q Consensus 119 ~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~ 198 (705)
.+. .-.+.++.+...+||++.|.+++..+... ++...+++-....+|+++-.|.........+.+.+
T Consensus 151 ------~~l---~v~ltrarlll~~~d~~aA~~~v~~ll~~----~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 151 ------DTL---AVELTRARLLLNRRDYPAARENVDQLLEM----TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred ------chH---HHHHHHHHHHHhCCCchhHHHHHHHHHHh----CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 222 25677899999999999999999998776 88888999889999999976666555555554443
Q ss_pred HHhhhc-CcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCC
Q 005266 199 RVWESI-DPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLP 277 (705)
Q Consensus 199 ~~~~~~-~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~ 277 (705)
-+=++- ..=...-|-|+ ||-|- +... .+.+.++-+...+|.+.-++| .-.++..+-+++.+
T Consensus 218 ~l~~~e~~~le~~a~~gl------------L~q~~--~~~~-~~gL~~~W~~~pr~lr~~p~l---~~~~a~~li~l~~~ 279 (400)
T COG3071 218 LLSDEEAARLEQQAWEGL------------LQQAR--DDNG-SEGLKTWWKNQPRKLRNDPEL---VVAYAERLIRLGDH 279 (400)
T ss_pred CCChHHHHHHHHHHHHHH------------HHHHh--cccc-chHHHHHHHhccHHhhcChhH---HHHHHHHHHHcCCh
Confidence 221100 00000000010 11100 0000 222333333333332222222 11122333333332
Q ss_pred hhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccccC-CCC---cccccccchhhHHHHHHHHHHH
Q 005266 278 SRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLA-PSP---MDGEWLPKSAVYALVDLMVVIL 353 (705)
Q Consensus 278 ~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~---l~~~WLpk~~~~aL~yll~~~~ 353 (705)
..+.+.+.+-++...++++.-..+ .++.+ +.+ ..-+|+.++...++.+.-.+..
T Consensus 280 -------~~A~~~i~~~Lk~~~D~~L~~~~~---------------~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L 337 (400)
T COG3071 280 -------DEAQEIIEDALKRQWDPRLCRLIP---------------RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRL 337 (400)
T ss_pred -------HHHHHHHHHHHHhccChhHHHHHh---------------hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 334455555555522222111000 00011 001 2247888877788888888999
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHH
Q 005266 354 GRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACES 433 (705)
Q Consensus 354 ~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a 433 (705)
++..+.+.||.++++.++.. .++. ..|
T Consensus 338 ~~k~~~w~kA~~~leaAl~~----------~~s~-------------~~~------------------------------ 364 (400)
T COG3071 338 ALKNKLWGKASEALEAALKL----------RPSA-------------SDY------------------------------ 364 (400)
T ss_pred HHHhhHHHHHHHHHHHHHhc----------CCCh-------------hhH------------------------------
Confidence 99999999999999988774 1121 111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 005266 434 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 465 (705)
Q Consensus 434 ~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~ 465 (705)
..+|..+-.+|+..+|..+++.++.+...
T Consensus 365 ---~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 365 ---AELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 26788899999999999999999876544
No 140
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.14 Score=56.26 Aligned_cols=165 Identities=22% Similarity=0.190 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-SMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~-~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~ 509 (705)
|.-++.+.+|.++...|++++|+-.|+++..+++.. .+.+ +. |.+.-..|+++..+....-+=.+ .+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD---~Y-a~LL~~eg~~e~~~~L~~~Lf~~----~~~--- 298 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD---LY-AVLLGQEGGCEQDSALMDYLFAK----VKY--- 298 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH---HH-HHHHHhccCHhhHHHHHHHHHhh----hhc---
Confidence 778889999999999999999999999988887652 2111 11 33344457765533322211111 111
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
-+.-||+.|.+.+..+++..|+.+-.++++.- ..| . .+|..-|.....+|++++|.=.|+.|-.|+
T Consensus 299 --ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~---~r~--~--~alilKG~lL~~~~R~~~A~IaFR~Aq~La----- 364 (564)
T KOG1174|consen 299 --TASHWFVHAQLLYDEKKFERALNFVEKCIDSE---PRN--H--EALILKGRLLIALERHTQAVIAFRTAQMLA----- 364 (564)
T ss_pred --chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC---ccc--c--hHHHhccHHHHhccchHHHHHHHHHHHhcc-----
Confidence 15578999999999999999999999887772 112 1 477888999999999999999888887764
Q ss_pred hhhHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005266 590 IPTQIWALSVLTALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 590 ~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
+..+.++..|=.-|.+.|...+|+-......
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 3345555555566666666665554443333
No 141
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.90 E-value=0.0033 Score=70.06 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=54.0
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHH
Q 005266 428 QEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAID 494 (705)
Q Consensus 428 ~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALe 494 (705)
.+|..+..++.+|..+...|+|++|+.+|++|+.+.++......++.|+|.+|...|+.++ +.+|++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4557788888999999999999999999999999988755334667888888888888766 455555
No 142
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0063 Score=66.56 Aligned_cols=136 Identities=15% Similarity=0.223 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------------hhHHHHHHHHHHHHHHhhCChhh----HHHHHH
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES------------KSMQAMCHAYAAVSYFCIGDAES----SSQAID 494 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~------------~~g~a~a~~nlalv~l~~gd~d~----~~~ALe 494 (705)
..|...-.-|.++...|+|..|...|.+|++.... ......|++|+|++|+-.++|+. |+++|+
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 34455567899999999999999999999987542 12445799999999999999877 888888
Q ss_pred hhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHH
Q 005266 495 LIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAR 574 (705)
Q Consensus 495 li~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~ 574 (705)
+ -|++ .-++|-.|.++...|+|+.|+..|++++++. =.|.-..+ -+..|-..+... .+...
T Consensus 286 ~------~~~N-------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~---P~Nka~~~-el~~l~~k~~~~--~~kek 346 (397)
T KOG0543|consen 286 L------DPNN-------VKALYRRGQALLALGEYDLARDDFQKALKLE---PSNKAARA-ELIKLKQKIREY--EEKEK 346 (397)
T ss_pred c------CCCc-------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC---CCcHHHHH-HHHHHHHHHHHH--HHHHH
Confidence 2 2232 2379999999999999999999999999994 56744433 444444444332 22335
Q ss_pred HHHHHHHHHHH
Q 005266 575 EILRSSLTLAK 585 (705)
Q Consensus 575 ~~~~~Al~LAr 585 (705)
++|...+....
T Consensus 347 k~y~~mF~k~~ 357 (397)
T KOG0543|consen 347 KMYANMFAKLA 357 (397)
T ss_pred HHHHHHhhccc
Confidence 66766665444
No 143
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.76 E-value=0.0036 Score=50.75 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 517 FAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 517 ~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
+..|..++..|++++|...++++++.. ..-..++..+|.++..+|++++|...++.++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD-------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS-------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 346888899999999999999997663 124578999999999999999999999999864
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.72 E-value=0.022 Score=63.50 Aligned_cols=120 Identities=20% Similarity=0.225 Sum_probs=95.8
Q ss_pred HhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHH
Q 005266 10 GLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTF 89 (705)
Q Consensus 10 ~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~ 89 (705)
+|-..|...+.+..|+.-++.+.+..+ .+ -.-+|++++. .++-.+|...+++++...+.. +.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p----ev----~~~LA~v~l~-~~~E~~AI~ll~~aL~~~p~d-------~~LL 237 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP----EV----AVLLARVYLL-MNEEVEAIRLLNEALKENPQD-------SELL 237 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC----cH----HHHHHHHHHh-cCcHHHHHHHHHHHHHhCCCC-------HHHH
Confidence 456677777889999999999987664 33 2347888886 567889999999988655544 4777
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHH
Q 005266 90 SLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQS 155 (705)
Q Consensus 90 ~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~ 155 (705)
.+-|+.+...|+...|...+++|++.++.+ ...| +.||++|...|||..|+-+|..
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~-----f~~W-----~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVELSPSE-----FETW-----YQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCchh-----HHHH-----HHHHHHHHhcCCHHHHHHHHhc
Confidence 888999999999999999999999999841 2345 6689999999999999886664
No 145
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.69 E-value=0.022 Score=60.14 Aligned_cols=93 Identities=11% Similarity=0.143 Sum_probs=71.4
Q ss_pred HHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhcccc-ccCCccchhhhHHHHHHHHHHH
Q 005266 444 HSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVY-QMKDTINGVREEASLHFAYGLL 522 (705)
Q Consensus 444 ~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~-~~~~~~~g~~~qA~al~~lG~~ 522 (705)
...|+|++|...|+..++..++..-...++.|+|.+|...|++++.... +..+. .+|++.. ...+++.+|.+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~---f~~vv~~yP~s~~----~~dAl~klg~~ 226 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYY---FASVVKNYPKSPK----AADAMFKVGVI 226 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHHCCCCcc----hhHHHHHHHHH
Confidence 4468999999999999999888665567789999999999997762222 22221 3455433 25689999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHH
Q 005266 523 LMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 523 ~~~~g~~~eA~~~L~eAL~la 543 (705)
+...|++++|+..|++.++..
T Consensus 227 ~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 227 MQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999888775
No 146
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.075 Score=54.48 Aligned_cols=118 Identities=20% Similarity=0.146 Sum_probs=87.3
Q ss_pred HHcCCHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHH
Q 005266 444 HSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYG 520 (705)
Q Consensus 444 ~~~g~~~eA~~~f~~Al~l~~~---~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG 520 (705)
..-++++||...|.+|...+.= -+.-..+.+-+|-.++..|+ .. -+..-|+-+
T Consensus 25 gg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~s--------------------kh----Daat~YveA 80 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGS--------------------KH----DAATTYVEA 80 (288)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC--------------------ch----hHHHHHHHH
Confidence 3456899999999998866432 11112233334444444332 11 145556666
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHHHH
Q 005266 521 LLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL-HDTVQAREILRSSLTLAKK 586 (705)
Q Consensus 521 ~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l-g~~~qA~~~~~~Al~LArk 586 (705)
.-.++.+++++|.+.|..|+.+.+ ..|+-.+-|....-+|++|-.- .+.++|..+|+.|-++.+.
T Consensus 81 ~~cykk~~~~eAv~cL~~aieIyt-~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 81 ANCYKKVDPEEAVNCLEKAIEIYT-DMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred HHHhhccChHHHHHHHHHHHHHHH-hhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 667789999999999999999995 7999999999999999999887 8999999999999888764
No 147
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.67 E-value=1.4 Score=52.94 Aligned_cols=220 Identities=16% Similarity=0.080 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 005266 342 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 421 (705)
Q Consensus 342 ~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~ 421 (705)
..+-.-.+.+++...+|++++|+++...++.++.+ ..|..++.|
T Consensus 456 l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~-------------------~~~~~r~~~----------------- 499 (894)
T COG2909 456 LLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE-------------------AAYRSRIVA----------------- 499 (894)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc-------------------ccchhhhhh-----------------
Confidence 44555567788999999999999999999887211 122212211
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHhhCCh--hhHHHHHHhh
Q 005266 422 SGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYFCIGDA--ESSSQAIDLI 496 (705)
Q Consensus 422 ~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~---~~~g~a~a~~nlalv~l~~gd~--d~~~~ALeli 496 (705)
..++|.+.+-.|++++|......|.++.+ .......+..-.+.+...+|.. .+...+-.++
T Consensus 500 --------------~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~ 565 (894)
T COG2909 500 --------------LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLI 565 (894)
T ss_pred --------------hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 12678899999999999999888887754 3556666777778888888842 1222222222
Q ss_pred ccc--cccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHH
Q 005266 497 GPV--YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAR 574 (705)
Q Consensus 497 ~~~--~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~ 574 (705)
+.. ...|-+ .......+.++-..-+++.+..-.+.++.......-++++.+-++..|+.+++..||.++|.
T Consensus 566 ~~q~l~q~~~~-------~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~ 638 (894)
T COG2909 566 REQHLEQKPRH-------EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKAL 638 (894)
T ss_pred HHHHhhhcccc-------hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHH
Confidence 221 111111 11222223333333448888888888888876556666676666679999999999999999
Q ss_pred HHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHcCCchHHHHHHH
Q 005266 575 EILRSSLTLAKKL-YDIPTQIWALSVLTALYQQLGDRGNEMENDE 618 (705)
Q Consensus 575 ~~~~~Al~LArk~-gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~ 618 (705)
...+....+.... ++....+-+...--.+-...||+..|.+...
T Consensus 639 ~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 639 AQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence 9999999998887 4555666666555556667788777766543
No 148
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.61 E-value=0.0049 Score=50.23 Aligned_cols=54 Identities=22% Similarity=0.257 Sum_probs=48.4
Q ss_pred hhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhcc
Q 005266 57 HTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTS 117 (705)
Q Consensus 57 ~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~ 117 (705)
..+|+++|..+|++++...|+.+ .+.+.|++||.+.|++..|+..+.+.+...+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNP-------EARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSH-------HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hccCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46899999999999999988887 8888999999999999999999999888777
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.56 E-value=0.039 Score=63.77 Aligned_cols=137 Identities=18% Similarity=0.196 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHhhCChhhHHHHHHhhcccc-ccCCccchhhhHHHHHHHHHHHHHHhcC--------HHHHHHHHHH
Q 005266 468 MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVY-QMKDTINGVREEASLHFAYGLLLMRQQD--------FQEARNRLAK 538 (705)
Q Consensus 468 g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~-~~~~~~~g~~~qA~al~~lG~~~~~~g~--------~~eA~~~L~e 538 (705)
..|.-+.--|.-|+..++.+...+|.++++... ..|+. |.+|-.++.++..... ..++.+.+.+
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~-------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF-------TYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 344444444555666566555666666655542 23653 3344444444433322 2233333333
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHH
Q 005266 539 GLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDE 618 (705)
Q Consensus 539 AL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~ 618 (705)
++.+. .+ ...+.++..+|-++...|++++|..++++|+.+- +. ..++..+|+++...|++++|.+.++
T Consensus 410 a~al~----~~-~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-----ps--~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 410 IVALP----EL-NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-----MS--WLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred hhhcc----cC-cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CC--HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 32221 12 2224677888888999999999999999999886 12 5688889999999999999999888
Q ss_pred HHHHH
Q 005266 619 YRRKK 623 (705)
Q Consensus 619 ~~~~~ 623 (705)
.+.+.
T Consensus 478 ~A~~L 482 (517)
T PRK10153 478 TAFNL 482 (517)
T ss_pred HHHhc
Confidence 77654
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.72 Score=48.06 Aligned_cols=150 Identities=16% Similarity=0.110 Sum_probs=103.3
Q ss_pred HhhhhhhhHHhhh---------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChh
Q 005266 417 VELTRSGFVEAQE---------ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 487 (705)
Q Consensus 417 ~~L~~~~~~~a~~---------~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d 487 (705)
+.|+..+.+.|+. |+...+.-+.|+.+..+|.+++|...|..-+.-+ +.-.+.=-+-+|++-. +|..-
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka-~GK~l 137 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKA-QGKNL 137 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHH-cCCcH
Confidence 4455555555543 2567788899999999999999999999755433 3322322344454433 36544
Q ss_pred hHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC
Q 005266 488 SSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL 567 (705)
Q Consensus 488 ~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l 567 (705)
++-+.|.-+- -.|++| ..+|.-++-.|+..|+|..|.=++++-+=+. -.|+ ....++|++++..
T Consensus 138 ~aIk~ln~YL--~~F~~D-------~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~---P~n~----l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 138 EAIKELNEYL--DKFMND-------QEAWHELAEIYLSEGDFEKAAFCLEELLLIQ---PFNP----LYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHHHHHHH--HHhcCc-------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC---CCcH----HHHHHHHHHHHHH
Confidence 4222222111 146665 6799999999999999999999999886652 2342 4667899998888
Q ss_pred C---ChHHHHHHHHHHHHHHH
Q 005266 568 H---DTVQAREILRSSLTLAK 585 (705)
Q Consensus 568 g---~~~qA~~~~~~Al~LAr 585 (705)
| +.+-|+++|.+|+.+.-
T Consensus 202 gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNP 222 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhCh
Confidence 8 56669999999998876
No 151
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.04 Score=58.37 Aligned_cols=107 Identities=16% Similarity=0.073 Sum_probs=78.0
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh-----HHHHHHhhc
Q 005266 423 GFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES-----SSQAIDLIG 497 (705)
Q Consensus 423 ~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~-----~~~ALeli~ 497 (705)
+...+++|.++.--.+||.+++.+|+++.|...|.+|.++.+++.- ......-++.+-..+.-.. +.+++.
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~-~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--- 221 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE-ILLGLAEALYYQAGQQMTAKARALLRQALA--- 221 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCcccHHHHHHHHHHHh---
Confidence 4455678888888899999999999999999999999999998651 1112222333333222111 555555
Q ss_pred cccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 498 PVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 498 ~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
..|++ ..+.+.+|..++.+|+|.+|...++.=|+..
T Consensus 222 ---~D~~~-------iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 222 ---LDPAN-------IRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred ---cCCcc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 22332 4578888999999999999999999988886
No 152
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.32 Score=55.67 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHH-HHHHHhhCChhhHHHHHHhhccccccCCccchh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA-AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nl-alv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~ 509 (705)
.+..+..+.|+++.+.|+|++|...|+.-++-..+.. ...-..|+ +.+-.-.++ -+..+.. .|.+..
T Consensus 108 ~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~-d~~~r~nl~a~~a~l~~~------~~q~v~~---v~e~sy-- 175 (652)
T KOG2376|consen 108 LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ-DEERRANLLAVAAALQVQ------LLQSVPE---VPEDSY-- 175 (652)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHHHhhhHH------HHHhccC---CCcchH--
Confidence 4466888999999999999999999998555433211 11111221 111100010 1221111 122222
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--cCH------HHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM--GNL------QLVSQYLTILGNLALALHDTVQAREILRSSL 581 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~--gn~------~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al 581 (705)
..+|+.++.+...|+|++|.+.|+.|++++++.. ++. .-..-.-..|+-++..+|+.++|-..|..-
T Consensus 176 ----el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~- 250 (652)
T KOG2376|consen 176 ----ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI- 250 (652)
T ss_pred ----HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH-
Confidence 2589999999999999999999999988875321 111 123446788999999999999999998765
Q ss_pred HHHHHcCChhhHHHHHHHHHHH
Q 005266 582 TLAKKLYDIPTQIWALSVLTAL 603 (705)
Q Consensus 582 ~LArk~gD~~~q~~al~~L~~l 603 (705)
+.++..|.+..+.+.++|--+
T Consensus 251 -i~~~~~D~~~~Av~~NNLva~ 271 (652)
T KOG2376|consen 251 -IKRNPADEPSLAVAVNNLVAL 271 (652)
T ss_pred -HHhcCCCchHHHHHhcchhhh
Confidence 678888988888877776443
No 153
>PRK15331 chaperone protein SicA; Provisional
Probab=96.40 E-value=0.024 Score=55.34 Aligned_cols=113 Identities=15% Similarity=0.062 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
-...|..|.-.+.+|++++|...++ .|-+.. ..|+ .++.-||-++..++++++|...|.-|..+...-+.+
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~-~L~~~d--~~n~----~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p-- 107 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFR-FLCIYD--FYNP----DYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP-- 107 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHH-HHHHhC--cCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc--
Confidence 4467888888999999999999999 677652 5554 467889999999999999999999999887643333
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhccchh
Q 005266 593 QIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHHIELISKVKLEVQ 652 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~~~~h~~l~~~~~~~~~ 652 (705)
....|..|...|++..|+.+++.... .|.|..|-+|...-+.
T Consensus 108 ----~f~agqC~l~l~~~~~A~~~f~~a~~--------------~~~~~~l~~~A~~~L~ 149 (165)
T PRK15331 108 ----VFFTGQCQLLMRKAAKARQCFELVNE--------------RTEDESLRAKALVYLE 149 (165)
T ss_pred ----cchHHHHHHHhCCHHHHHHHHHHHHh--------------CcchHHHHHHHHHHHH
Confidence 23458999999999999998887766 3667777777665543
No 154
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=2.4 Score=47.72 Aligned_cols=228 Identities=12% Similarity=0.081 Sum_probs=142.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhH--Hhhhh----
Q 005266 357 KGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV--EAQEA---- 430 (705)
Q Consensus 357 ~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~--~a~~~---- 430 (705)
.|+-+.-..-+++|..+ ||. ...++.|.+-+|+-+.-.+.|-+.+-...+++-+ ...+.
T Consensus 335 ~g~~~~Ire~yErAIan-------------vpp--~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk 399 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIAN-------------VPP--ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK 399 (677)
T ss_pred cCCHHHHHHHHHHHHcc-------------CCc--hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc
Confidence 37888888888888775 232 3457999766665555444443333321111111 11111
Q ss_pred --hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChh-HHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccC
Q 005266 431 --CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-MQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMK 503 (705)
Q Consensus 431 --~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~-g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~ 503 (705)
.=+.+-.+.+.+-.++-++..|....-.|+..++... -....-+-+ ..+++|. +++-|+ ..|
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelEl-----qL~efDRcRkLYEkfle------~~P 468 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELEL-----QLREFDRCRKLYEKFLE------FSP 468 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHH-----HHhhHHHHHHHHHHHHh------cCh
Confidence 2277778899999999999999999999998877632 112111111 1244555 344444 335
Q ss_pred CccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 504 DTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 504 ~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
++ ..+|...|-.-...|+.+.|+..+.-|+.-- ...-|.+.-.++. +.-...|.++.|++.|++-|+.
T Consensus 469 e~-------c~~W~kyaElE~~LgdtdRaRaifelAi~qp--~ldmpellwkaYI---dFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 469 EN-------CYAWSKYAELETSLGDTDRARAIFELAISQP--ALDMPELLWKAYI---DFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred Hh-------hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc--ccccHHHHHHHhh---hhhhhcchHHHHHHHHHHHHHh
Confidence 43 5578888888888999999999999776652 3666677666655 4456789999999999998877
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHcCC--------------chHHHHHHHHHHHHHHHH
Q 005266 584 AKKLYDIPTQIWALSVLTALYQQLGD--------------RGNEMENDEYRRKKLDEL 627 (705)
Q Consensus 584 Ark~gD~~~q~~al~~L~~l~~~~Gd--------------~~~A~e~~~~~~~~~~~l 627 (705)
.+-.. +|.+-.-=.+-...|+ ..+|...|+.++....+.
T Consensus 537 t~h~k-----vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 537 TQHVK-----VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred cccch-----HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 65443 6665443333222332 235666666666666543
No 155
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.36 E-value=0.17 Score=60.33 Aligned_cols=146 Identities=14% Similarity=0.045 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------hhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhcccc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES------KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVY 500 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~------~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~ 500 (705)
..|..-.+.+.+..+..+++||.....++....+. ....+....--|.+-+..||++. ++.+++.+.+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~-- 490 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE-- 490 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc--
Confidence 45778889999999999999999888886655332 22233333334677777888877 5666664333
Q ss_pred ccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 005266 501 QMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSS 580 (705)
Q Consensus 501 ~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~A 580 (705)
+.... ++.++.+.|.+.+-+|++++|+.+.++|.++++ ..++..+...+...-+.|....|+...|...-...
T Consensus 491 ----~~~~~--r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~-~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~ 563 (894)
T COG2909 491 ----AAYRS--RIVALSVLGEAAHIRGELTQALALMQQAEQMAR-QHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFN 563 (894)
T ss_pred ----ccchh--hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333 578999999999999999999999999999995 68888999999999999999999555444443333
Q ss_pred HHHHH
Q 005266 581 LTLAK 585 (705)
Q Consensus 581 l~LAr 585 (705)
+.-..
T Consensus 564 ~~~~q 568 (894)
T COG2909 564 LIREQ 568 (894)
T ss_pred HHHHH
Confidence 33333
No 156
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.32 E-value=0.038 Score=58.41 Aligned_cols=106 Identities=8% Similarity=-0.041 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccc
Q 005266 43 EVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122 (705)
Q Consensus 43 EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~ 122 (705)
+...-...|--|+...+++++|.+.|++.+..-|..+ ..=.++|.|+++|+..|++..|...+++.++..+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~----~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP----- 211 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST----YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP----- 211 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----
Confidence 4577788888887667999999999998777665542 1116889999999999999999999999888665
Q ss_pred cccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 005266 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (705)
Q Consensus 123 ~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~ 159 (705)
...|....++.+|.++...||+..|...|+.++..
T Consensus 212 --~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 212 --KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred --CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67788889999999999999999999999998864
No 157
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.30 E-value=0.0096 Score=42.96 Aligned_cols=35 Identities=29% Similarity=0.231 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh
Q 005266 556 YLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 590 (705)
Q Consensus 556 aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~ 590 (705)
++..||.+|...|++++|.++|++++.+.+..+|.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~~ 35 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPEDR 35 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-H
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCC
Confidence 57889999999999999999999999999888774
No 158
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.17 E-value=0.022 Score=63.61 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
+.+|+++|.+++..|+|++|...+++||.+. - .+ .-...+++.+|.+|..+|+.++|.+++++|+++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-P--d~-aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN-P--NP-DEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C--Cc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6799999999999999999999999999994 2 22 112257999999999999999999999999987
No 159
>PRK11906 transcriptional regulator; Provisional
Probab=96.15 E-value=0.07 Score=59.86 Aligned_cols=135 Identities=14% Similarity=0.089 Sum_probs=95.7
Q ss_pred HHH--HHHHHHHHHHHcCCHH---HHHHHHHHHH---HhcCChhHHHHHHHHHHHHHHhh---C--C-hhhHHHHHHhhc
Q 005266 432 ESM--IEMLRGQYAHSVGCYS---EAAFHYVEAA---KITESKSMQAMCHAYAAVSYFCI---G--D-AESSSQAIDLIG 497 (705)
Q Consensus 432 ~a~--~~~llG~~~~~~g~~~---eA~~~f~~Al---~l~~~~~g~a~a~~nlalv~l~~---g--d-~d~~~~ALeli~ 497 (705)
++. -.|+.|.-....+-.+ .|+.+|.+|+ .+.++ -+.++..+|.++... | + ......|+++.+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~---~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~ 328 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL---KTECYCLLAECHMSLALHGKSELELAAQKALELLD 328 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc---cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 555 6688999888777655 5888999999 55544 233344444444331 1 2 112333333332
Q ss_pred cc-cccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHH
Q 005266 498 PV-YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREI 576 (705)
Q Consensus 498 ~~-~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~ 576 (705)
.. .-.|+| +.+++.+|.+....++++.|...|.+|+.+. .-.+.++...|++..-.|+.++|.++
T Consensus 329 rAveld~~D-------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-------Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 329 YVSDITTVD-------GKILAIMGLITGLSGQAKVSHILFEQAKIHS-------TDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHhcCCCC-------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 21 123443 7799999999999999999999999997773 12467999999999999999999999
Q ss_pred HHHHHHH
Q 005266 577 LRSSLTL 583 (705)
Q Consensus 577 ~~~Al~L 583 (705)
.++|++|
T Consensus 395 i~~alrL 401 (458)
T PRK11906 395 IDKSLQL 401 (458)
T ss_pred HHHHhcc
Confidence 9999987
No 160
>PRK15331 chaperone protein SicA; Provisional
Probab=96.12 E-value=0.085 Score=51.55 Aligned_cols=111 Identities=14% Similarity=0.071 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHH
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEAS 514 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~ 514 (705)
..|..|.-....|++++|+..|+--...+ + . ...
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d----------------------------------~-----~-------n~~ 72 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYD----------------------------------F-----Y-------NPD 72 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------------c-----C-------cHH
Confidence 34567777888999999999997522211 1 1 134
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 594 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~ 594 (705)
+|+.+|.++..+++|++|...+..|.-+. ..|++ ....+|..|+.+|+.++|++++..+.. +..|.-..-
T Consensus 73 Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~---~~dp~----p~f~agqC~l~l~~~~~A~~~f~~a~~---~~~~~~l~~ 142 (165)
T PRK15331 73 YTMGLAAVCQLKKQFQKACDLYAVAFTLL---KNDYR----PVFFTGQCQLLMRKAAKARQCFELVNE---RTEDESLRA 142 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc---cCCCC----ccchHHHHHHHhCCHHHHHHHHHHHHh---CcchHHHHH
Confidence 78999999999999999999999998885 34543 367899999999999999999999887 344444444
Q ss_pred HHHHHHH
Q 005266 595 WALSVLT 601 (705)
Q Consensus 595 ~al~~L~ 601 (705)
++-..|.
T Consensus 143 ~A~~~L~ 149 (165)
T PRK15331 143 KALVYLE 149 (165)
T ss_pred HHHHHHH
Confidence 4444443
No 161
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.09 E-value=0.47 Score=43.96 Aligned_cols=112 Identities=11% Similarity=0.146 Sum_probs=86.3
Q ss_pred HHHHHHH--HHHHHHhcCHHHHHHHHHHHHHHHHhccc------CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 513 ASLHFAY--GLLLMRQQDFQEARNRLAKGLQIAHNHMG------NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 513 A~al~~l--G~~~~~~g~~~eA~~~L~eAL~la~~e~g------n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
+.+|..+ |.-.+.-|-|++|-.-+++|+.+++ .+- ..-..+-+..-|+.++..+|+++++..+++.||..+
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~sr-tiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSR-TIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT-TS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-cCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 4455544 5556678899999999999999984 332 223567788899999999999999999999999999
Q ss_pred HHcCChh---hHHHHHHHHHH--HHHHcCCchHHHHHHHHHHHHHH
Q 005266 585 KKLYDIP---TQIWALSVLTA--LYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 585 rk~gD~~---~q~~al~~L~~--l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
.+-|+.+ +..|...+..+ ....+|++++|...+....++..
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 9988876 78888877665 67889999999998888877654
No 162
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.01 E-value=0.029 Score=46.33 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=51.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 005266 92 LSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (705)
Q Consensus 92 LA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~ 159 (705)
|.++|...+++..+...+.+++...+ +..+ .++.+|.++...|+|..|.+.|+...+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p-------~~~~---~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDP-------DDPE---LWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCc-------ccch---hhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46789999999999999999999988 4555 7788999999999999999999998876
No 163
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.95 E-value=0.57 Score=52.69 Aligned_cols=76 Identities=20% Similarity=0.058 Sum_probs=34.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHH
Q 005266 92 LSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMF 171 (705)
Q Consensus 92 LA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~ 171 (705)
.++++...|+.+.|-..++|++.+.+ +..| ...-+|+.+...|++..|+..|..+..- .+......
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~P-------~~~~---l~~~~a~all~~g~~~eai~~L~~~~~~----~p~dp~~w 411 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALDP-------NSPL---LQLNLAQALLKGGKPQEAIRILNRYLFN----DPEDPNGW 411 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCC-------CccH---HHHHHHHHHHhcCChHHHHHHHHHHhhc----CCCCchHH
Confidence 34444455444444444555444444 3344 4444455555555555555544443331 33334444
Q ss_pred HHHHHHHHHh
Q 005266 172 FATAILHVHL 181 (705)
Q Consensus 172 ~~La~~~~~L 181 (705)
..|++.+-.+
T Consensus 412 ~~LAqay~~~ 421 (484)
T COG4783 412 DLLAQAYAEL 421 (484)
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.90 E-value=0.043 Score=58.10 Aligned_cols=95 Identities=11% Similarity=0.074 Sum_probs=76.5
Q ss_pred hhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 005266 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (705)
Q Consensus 83 dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~ 162 (705)
+||.+-.. ..+.|++..|...-.+||++.+ .+.= |+-.+|.+|..-|.|..|++-++.++.+
T Consensus 83 ~LK~eGN~-----~m~~~~Y~eAv~kY~~AI~l~P-------~nAV---yycNRAAAy~~Lg~~~~AVkDce~Al~i--- 144 (304)
T KOG0553|consen 83 SLKNEGNK-----LMKNKDYQEAVDKYTEAIELDP-------TNAV---YYCNRAAAYSKLGEYEDAVKDCESALSI--- 144 (304)
T ss_pred HHHHHHHH-----HHHhhhHHHHHHHHHHHHhcCC-------Ccch---HHHHHHHHHHHhcchHHHHHHHHHHHhc---
Confidence 45555444 3445677778888889999998 4444 6778999999999999999999998888
Q ss_pred cCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHH
Q 005266 163 ISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDR 199 (705)
Q Consensus 163 ~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~ 199 (705)
++.+-+.+-.|..+++-+ .++.+++.++.++-.
T Consensus 145 -Dp~yskay~RLG~A~~~~---gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 145 -DPHYSKAYGRLGLAYLAL---GKYEEAIEAYKKALE 177 (304)
T ss_pred -ChHHHHHHHHHHHHHHcc---CcHHHHHHHHHhhhc
Confidence 888999999999999888 889999888877643
No 165
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.86 E-value=0.069 Score=64.88 Aligned_cols=101 Identities=10% Similarity=0.100 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHH-------------HHHHHHHHHHHHCCChHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVS-------------QYLTILGNLALALHDTVQAREILRS 579 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a-------------~aL~~LG~i~~~lg~~~qA~~~~~~ 579 (705)
..+|+.+|.++++.++++++... .++.+.. ...+...+. .+|..||.+|-.+|+.++|.+.|++
T Consensus 65 i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~-~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer 141 (906)
T PRK14720 65 ISALYISGILSLSRRPLNDSNLL--NLIDSFS-QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER 141 (906)
T ss_pred eehHHHHHHHHHhhcchhhhhhh--hhhhhcc-cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 55888889989888888888777 6777763 333222222 4777888888888999999999999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 580 SLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 580 Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
++.+- +.-..+++.+|..|... +.++|.+.+..+...
T Consensus 142 ~L~~D------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 142 LVKAD------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHhcC------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 99885 44588999999999999 999999876665544
No 166
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.084 Score=55.99 Aligned_cols=99 Identities=25% Similarity=0.164 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHHHHHcCC
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH---DTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg---~~~qA~~~~~~Al~LArk~gD 589 (705)
+..|.++|-+++.+|++..|...|++|.++. -.|+. .+..+|.++.... +..++.+++++++.+
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~---g~n~~----~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~------ 222 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLA---GDNPE----ILLGLAEALYYQAGQQMTAKARALLRQALAL------ 222 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhC---CCCHH----HHHHHHHHHHHhcCCcccHHHHHHHHHHHhc------
Confidence 6689999999999999999999999999995 34543 4445666665544 678899999999755
Q ss_pred hhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 590 IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 590 ~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
.+..+-++..|+..+...||+.+|...++.-++..
T Consensus 223 D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 223 DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 34457888899999999999999999888766543
No 167
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.16 Score=55.78 Aligned_cols=129 Identities=17% Similarity=0.101 Sum_probs=102.1
Q ss_pred CCCCCh-HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCC--------chhhhhhhHHHHHHHHHHHcCCChhH
Q 005266 35 HVSFLP-IIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIP--------SCFELKCRTFSLLSQCYHLVGAIPPQ 105 (705)
Q Consensus 35 ~~~~~p-~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~--------~~~dlK~~~~~lLA~~y~~~~~~~~a 105 (705)
+.++.+ ++++-+|.|--.--+.--+++..|...++||...+..-. ...++|-..+.-||-||.+++.+..|
T Consensus 197 ~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~A 276 (397)
T KOG0543|consen 197 WKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEA 276 (397)
T ss_pred cccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHH
Confidence 344566 888888888766666667899999999999988875432 24588889999999999999999999
Q ss_pred HHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 005266 106 KLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAIL 177 (705)
Q Consensus 106 k~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~ 177 (705)
...-.|.+++.+. +.+ =+|.++.++...++|+.|...|++...+ .+.+-.+-..|+.+
T Consensus 277 i~~c~kvLe~~~~------N~K----ALyRrG~A~l~~~e~~~A~~df~ka~k~----~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 277 IESCNKVLELDPN------NVK----ALYRRGQALLALGEYDLARDDFQKALKL----EPSNKAARAELIKL 334 (397)
T ss_pred HHHHHHHHhcCCC------chh----HHHHHHHHHHhhccHHHHHHHHHHHHHh----CCCcHHHHHHHHHH
Confidence 9999999998884 333 6888999999999999999999998887 55444444444443
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.76 E-value=0.33 Score=48.37 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhc---cccccCCccchhhh
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIG---PVYQMKDTINGVRE 511 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~---~~~~~~~~~~g~~~ 511 (705)
=++-||..+...|++.||..||++|+. +-..+....++.++......+++..+.+.||-+. |.++.|+
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd------- 161 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD------- 161 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-------
Confidence 356789999999999999999999874 2233445567888888888899877666666544 3334343
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
....+|-++..+|++.+|...++.++.-+. .++..+ .-|.....+|...+|..-+.....-+++..-
T Consensus 162 ---~~Ll~aR~laa~g~~a~Aesafe~a~~~yp----g~~ar~----~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~ 228 (251)
T COG4700 162 ---GHLLFARTLAAQGKYADAESAFEVAISYYP----GPQARI----YYAEMLAKQGRLREANAQYVAVVDTAKRSRP 228 (251)
T ss_pred ---chHHHHHHHHhcCCchhHHHHHHHHHHhCC----CHHHHH----HHHHHHHHhcchhHHHHHHHHHHHHHHhcch
Confidence 456667888899999999999999987763 334433 4566777889888888777777666666554
No 169
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.70 E-value=0.025 Score=39.45 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 465 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~ 465 (705)
|.+++.+|.++..+|++++|..+|++|+++.++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 457889999999999999999999999999775
No 170
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.69 E-value=0.025 Score=39.71 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 465 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~ 465 (705)
|.+++.+|.++..+|++++|+.+|++|+++.++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 457889999999999999999999999999875
No 171
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.62 E-value=0.069 Score=57.22 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=79.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHH
Q 005266 441 QYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYG 520 (705)
Q Consensus 441 ~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG 520 (705)
.++...||+|.|...|+..-+.+++.. .+.+..|++.+..|. +.+..|.-.+.++....+. -...++..+
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~eD~~---l~qLa~awv~l~~g~-e~~~~A~y~f~El~~~~~~------t~~~lng~A 208 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQIDEDSI---LTQLAEAWVNLATGG-EKYQDAFYIFEELSDKFGS------TPKLLNGLA 208 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCSCCHH---HHHHHHHHHHHHHTT-TCCCHHHHHHHHHHCCS--------SHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcHH---HHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhccCC------CHHHHHHHH
Confidence 456678999999999998766665533 334444556666665 3345555555555333221 144688899
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHH-HHHHHH
Q 005266 521 LLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQ-AREILR 578 (705)
Q Consensus 521 ~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~q-A~~~~~ 578 (705)
.+++.+|++++|...|.+|+..- ..| ..++..+.-+...+|+..+ +.+...
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~---~~~----~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKD---PND----PDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC----CCH----HHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc---cCC----HHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 99999999999999999997542 233 3577888899999998844 444444
No 172
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=1.8 Score=45.09 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=29.0
Q ss_pred cccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 005266 336 WLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQ 372 (705)
Q Consensus 336 WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~ 372 (705)
|=|...--+=.|.=.+..+|...+|+||--.+.+|.+
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 5555555566677788999999999999988888875
No 173
>PRK11906 transcriptional regulator; Provisional
Probab=95.57 E-value=0.31 Score=54.85 Aligned_cols=105 Identities=15% Similarity=0.133 Sum_probs=66.9
Q ss_pred hhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhcccc
Q 005266 421 RSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVY 500 (705)
Q Consensus 421 ~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~ 500 (705)
..+.+.+.++.+|+++..+|.+....|+++.|..-|++|+.+.+
T Consensus 326 ~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P------------------------------------ 369 (458)
T PRK11906 326 LLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST------------------------------------ 369 (458)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC------------------------------------
Confidence 34444445556666666666666666666666666666665533
Q ss_pred ccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHH
Q 005266 501 QMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREIL 577 (705)
Q Consensus 501 ~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~ 577 (705)
+ -|.+|+..|++++..|+.++|.+.+++|+++. -.+.-+..+-..=+.|...+ .+.|.+.|
T Consensus 370 ---n-------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-----P~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 370 ---D-------IASLYYYRALVHFHNEKIEEARICIDKSLQLE-----PRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred ---c-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----chhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 3 26689999999999999999999999998873 22343333333333565543 34444444
No 174
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.52 E-value=0.63 Score=43.14 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=75.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCC---------hhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCc
Q 005266 439 RGQYAHSVGCYSEAAFHYVEAAKITES---------KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 439 lG~~~~~~g~~~eA~~~f~~Al~l~~~---------~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~ 505 (705)
-|.--..-|-|++|..-+.+|+..++. .--.++|+..++-.+...|+|++ .+.||-.|+.-+....|
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 344556678999999999999998765 12357899999999999999988 67778777765444333
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 544 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~ 544 (705)
. |-.+ ..+-|..|.+..-.|+.++|...++.|-.+-.
T Consensus 95 e-GklW-IaaVfsra~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 95 E-GKLW-IAAVFSRAVALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp H-HHHH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred c-chhH-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 1 1111 24667789999999999999999999988864
No 175
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.47 E-value=0.49 Score=44.66 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=99.3
Q ss_pred ChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccc
Q 005266 39 LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSS 118 (705)
Q Consensus 39 ~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~ 118 (705)
.|-+|+---|.+-.|-+.+.+..+.|...|.+++.+.+..+ +++.-=|+.|...|..+.|..=|.||++++..
T Consensus 37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra-------SayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERA-------SAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccch-------HhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 47888888999999999999999999999999999999998 78878899999999999999999999999963
Q ss_pred cccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCch
Q 005266 119 ASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPD 167 (705)
Q Consensus 119 ~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~ 167 (705)
.+.-.|.-+.|.+.+|...|+-..|-.-++..+.+ |++.
T Consensus 110 ------~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L----GS~F 148 (175)
T KOG4555|consen 110 ------QTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL----GSKF 148 (175)
T ss_pred ------cchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh----CCHH
Confidence 34557777889999999999999999988887766 7763
No 176
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.45 E-value=0.11 Score=53.08 Aligned_cols=95 Identities=23% Similarity=0.203 Sum_probs=73.7
Q ss_pred cCCHHHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccc---cCCccchhhhHHH
Q 005266 446 VGCYSEAAFHYVEAAKI----TESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQ---MKDTINGVREEAS 514 (705)
Q Consensus 446 ~g~~~eA~~~f~~Al~l----~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~---~~~~~~g~~~qA~ 514 (705)
...+++|.+.|.-|+-. ....+-.|.+.+.+|++|...|+.+. +.+|++.+...+. +|..... ++.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~---~~~ 166 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD---EAT 166 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch---HHH
Confidence 45677888888877643 23466788999999999999988544 8999999887754 2332222 367
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
..|.+|..+.+.|++++|++++.+.+..-
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 89999999999999999999999987774
No 177
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.26 E-value=0.57 Score=52.68 Aligned_cols=158 Identities=11% Similarity=0.007 Sum_probs=105.2
Q ss_pred HHhhhcccHhHHhHHHHHHh-ccCC-CCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHH
Q 005266 13 DYHENKGEIGKAVKCLEAIC-QSHV-SFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFS 90 (705)
Q Consensus 13 e~~~~~~~i~~ai~CLea~~-~~~~-~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~ 90 (705)
|++.|.|-..+=|.-++.-. ++++ .-.+..+-..+-.-...+++-..|..-+.-..... + ...++++|
T Consensus 241 ~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~----~------~~~~aa~Y 310 (484)
T COG4783 241 EYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRS----K------RGGLAAQY 310 (484)
T ss_pred hHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHh----C------ccchHHHH
Confidence 34555666666677777433 3322 00112222222222233444444433333322211 1 24458999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHH
Q 005266 91 LLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQM 170 (705)
Q Consensus 91 lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~ 170 (705)
-.|-.+++.|+++.|.+.|+.-+...+ +|.| |....++++...|+++.|.+.+++..+. .+..--+
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P-------~N~~---~~~~~~~i~~~~nk~~~A~e~~~kal~l----~P~~~~l 376 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQP-------DNPY---YLELAGDILLEANKAKEAIERLKKALAL----DPNSPLL 376 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCC-------CCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCccHH
Confidence 999999999999999988888666555 9999 9999999999999999999999998876 5555566
Q ss_pred HHHHHHHHHHhcccCChhHHHHHHHHh
Q 005266 171 FFATAILHVHLMQWDDENSVLRSINQC 197 (705)
Q Consensus 171 ~~~La~~~~~L~~~~~~~~v~~al~~~ 197 (705)
-..+++.++.. .++.++++.|++.
T Consensus 377 ~~~~a~all~~---g~~~eai~~L~~~ 400 (484)
T COG4783 377 QLNLAQALLKG---GKPQEAIRILNRY 400 (484)
T ss_pred HHHHHHHHHhc---CChHHHHHHHHHH
Confidence 66778877777 8888888777665
No 178
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=1.3 Score=46.25 Aligned_cols=137 Identities=18% Similarity=0.102 Sum_probs=96.3
Q ss_pred ccHhHHhHHHHHHh-ccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHH
Q 005266 19 GEIGKAVKCLEAIC-QSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYH 97 (705)
Q Consensus 19 ~~i~~ai~CLea~~-~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~ 97 (705)
+...-|-+|...+- +|.. +|||+ ++=..++|-|+|+++|...++.-+.-.|........|.. -. .
T Consensus 66 ~~~~lAq~C~~~L~~~fp~--S~RV~-----~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA------il-k 131 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPG--SKRVG-----KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA------IL-K 131 (289)
T ss_pred cchHHHHHHHHHHHHhCCC--ChhHH-----HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH------HH-H
Confidence 45666778888855 4555 89997 677889999999999999999765544444323343433 22 2
Q ss_pred HcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 005266 98 LVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAIL 177 (705)
Q Consensus 98 ~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~ 177 (705)
-+|..-.+...+.+=++.=.+| +-.| ..+|++|...++|.+|+--|+..+=+ ++-.-.+|..+++.
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D-----~EAW-----~eLaeiY~~~~~f~kA~fClEE~ll~----~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMND-----QEAW-----HELAEIYLSEGDFEKAAFCLEELLLI----QPFNPLYFQRLAEV 197 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCc-----HHHH-----HHHHHHHHhHhHHHHHHHHHHHHHHc----CCCcHHHHHHHHHH
Confidence 3344434444455555555443 3456 46899999999999999999998876 77788889999998
Q ss_pred HHHhcc
Q 005266 178 HVHLMQ 183 (705)
Q Consensus 178 ~~~L~~ 183 (705)
+.-+..
T Consensus 198 ~Yt~gg 203 (289)
T KOG3060|consen 198 LYTQGG 203 (289)
T ss_pred HHHHhh
Confidence 877643
No 179
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.18 E-value=0.16 Score=44.81 Aligned_cols=81 Identities=22% Similarity=0.183 Sum_probs=70.9
Q ss_pred HHHCCChHHHHHHHHHHHHHHHHcCChh---hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 005266 564 ALALHDTVQAREILRSSLTLAKKLYDIP---TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHH 640 (705)
Q Consensus 564 ~~~lg~~~qA~~~~~~Al~LArk~gD~~---~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~~~~h 640 (705)
..+.||+.+|.+.+.+.++.++..++.. ...+++..++.++...|++++|.+.++.+.++.++..++.+-++.-.-.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4567999999999999999999999877 7788899999999999999999999999999999999988887765554
Q ss_pred HHHH
Q 005266 641 IELI 644 (705)
Q Consensus 641 ~~l~ 644 (705)
..|.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 4443
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.15 E-value=0.054 Score=43.97 Aligned_cols=66 Identities=17% Similarity=0.050 Sum_probs=50.6
Q ss_pred HHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 005266 97 HLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAI 176 (705)
Q Consensus 97 ~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~ 176 (705)
.+.|++..|...++++++..+ ++.. .++.+|.++...|++..|.+.|+.+... ++....+...+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-------~~~~---~~~~la~~~~~~g~~~~A~~~l~~~~~~----~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-------DNPE---ARLLLAQCYLKQGQYDEAEELLERLLKQ----DPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-------TSHH---HHHHHHHHHHHTT-HHHHHHHHHCCHGG----GTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-------CCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcCHHHHHHHHhc
Confidence 567888899999999999888 4454 7778999999999999999999998775 4444455444443
No 181
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.10 E-value=0.048 Score=38.25 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
|.+|+.+|.+++..|++++|+.++++|+++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4589999999999999999999999999983
No 182
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.04 E-value=0.051 Score=39.48 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc
Q 005266 553 VSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 587 (705)
Q Consensus 553 ~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~ 587 (705)
++.+++.||.+|...|++++|.+++++++.+.+++
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999887
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.03 E-value=1.7 Score=45.37 Aligned_cols=137 Identities=15% Similarity=0.114 Sum_probs=99.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhh-C----ChhhHHHHHHhhccc-cccCCccchh
Q 005266 436 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI-G----DAESSSQAIDLIGPV-YQMKDTINGV 509 (705)
Q Consensus 436 ~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~-g----d~d~~~~ALeli~~~-~~~~~~~~g~ 509 (705)
...++-.++..+++++|+....+=+++.+...-.+.+..-.++++... . |+.....|.+-+..+ .++|++....
T Consensus 74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~ 153 (254)
T COG4105 74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP 153 (254)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh
Confidence 347788899999999999999999999988766666666666766652 2 222266666666665 4568763211
Q ss_pred h---------hH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHH
Q 005266 510 R---------EE-ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREI 576 (705)
Q Consensus 510 ~---------~q-A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~ 576 (705)
. .+ |.-=...|..|++.|.+..|..++++.++-. .++.-+-.+|..|..+|..+|-.++|.+.
T Consensus 154 dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 154 DAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENY----PDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc----ccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 1 11 2222456777889999999999999988775 35566667999999999999999988764
No 184
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.02 E-value=0.16 Score=59.38 Aligned_cols=165 Identities=21% Similarity=0.237 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------hhHHH--HHH-----HHHHHHHHhhCChhh----HHHH
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---------KSMQA--MCH-----AYAAVSYFCIGDAES----SSQA 492 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~---------~~g~a--~a~-----~nlalv~l~~gd~d~----~~~A 492 (705)
.+....+|..+++.|+..+|...|++ +....+ ..+.| +.. =+.++.|-..||.-. +++|
T Consensus 398 Wq~q~~laell~slGitksAl~I~Er-lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFER-LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHh-HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHH
Confidence 56666888888888888888888887 222111 00000 001 112345555566322 7888
Q ss_pred HHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHH
Q 005266 493 IDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQ 572 (705)
Q Consensus 493 Leli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~q 572 (705)
.++.+.. -+-+....|.....+++|.++..+++.++++- -+.-.++..+|.+.+.+++...
T Consensus 477 wElsn~~------------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-------plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 477 WELSNYI------------SARAQRSLALLILSNKDFSEADKHLERSLEIN-------PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred HHHhhhh------------hHHHHHhhccccccchhHHHHHHHHHHHhhcC-------ccchhHHHhccHHHHHHhhhHH
Confidence 8865553 12244455666667899999999999999883 2333689999999999999999
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 573 AREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 573 A~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
|.+.|...+++. +...-+-++|+..|-..|+-.+|...+..+++.
T Consensus 538 av~aF~rcvtL~------Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 538 AVKAFHRCVTLE------PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHHHHhhcC------CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 999999999873 233455578999999999999999888777653
No 185
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.98 E-value=0.054 Score=37.69 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
|.+|+.+|.+++..|++++|++++++++++.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4589999999999999999999999999884
No 186
>PLN02789 farnesyltranstransferase
Probab=94.96 E-value=1.1 Score=48.81 Aligned_cols=150 Identities=7% Similarity=-0.048 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCCh--hh----HHHHHHhhccccc
Q 005266 429 EACESMIEMLRGQYAHSVG-CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA--ES----SSQAIDLIGPVYQ 501 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g-~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~--d~----~~~ALeli~~~~~ 501 (705)
.|....+....|.+....| ++++|+..+.+++...+.... + -.+-+.+....|+. +. +.++++ .
T Consensus 67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq-a--W~~R~~~l~~l~~~~~~~el~~~~kal~------~ 137 (320)
T PLN02789 67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ-I--WHHRRWLAEKLGPDAANKELEFTRKILS------L 137 (320)
T ss_pred CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH-H--hHHHHHHHHHcCchhhHHHHHHHHHHHH------h
Confidence 5566777888899999998 689999999999998887541 1 22223444444542 11 445555 2
Q ss_pred cCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCC---Ch----HHHH
Q 005266 502 MKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH---DT----VQAR 574 (705)
Q Consensus 502 ~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg---~~----~qA~ 574 (705)
.|.+ ..+|+..|++....|++++|+.++.++++.- ..| ..+++..|.+...+| .. +++.
T Consensus 138 dpkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N----~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 138 DAKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRN----NSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred Cccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCc----hhHHHHHHHHHHhccccccccccHHHHH
Confidence 3332 4689999999999999999999999999883 334 247778888877662 22 3456
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 005266 575 EILRSSLTLAKKLYDIPTQIWALSVLTALYQQL 607 (705)
Q Consensus 575 ~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~ 607 (705)
+++..++.+.-.- ..+| ..++-++...
T Consensus 204 ~y~~~aI~~~P~N----~SaW--~Yl~~ll~~~ 230 (320)
T PLN02789 204 KYTIDAILANPRN----ESPW--RYLRGLFKDD 230 (320)
T ss_pred HHHHHHHHhCCCC----cCHH--HHHHHHHhcC
Confidence 6666766553222 2345 4456666653
No 187
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.96 E-value=0.6 Score=57.03 Aligned_cols=152 Identities=12% Similarity=-0.036 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh--HHHHHHhhcccc--------
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES--SSQAIDLIGPVY-------- 500 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~--~~~ALeli~~~~-------- 500 (705)
....+..-+...+...|++++|......+++..++.. ...+.+|+++...++++. .-++++++..-.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i---~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI---SALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce---ehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHH
Confidence 3444555677777888888888888888777766522 235555667776666544 335555433320
Q ss_pred -ccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005266 501 -QMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 579 (705)
Q Consensus 501 -~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~ 579 (705)
...++ .+. .-.+++.+|.+|-..|++++|...++++|++- ..| +.+++.+|..|-.. +.++|..|+.+
T Consensus 106 ~~~i~~-~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n----~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 106 CDKILL-YGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDN----PEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred HHHHHh-hhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---ccc----HHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 00011 111 23589999999999999999999999999993 344 46999999999999 99999999999
Q ss_pred HHHHH--HHcCChhhHHHH
Q 005266 580 SLTLA--KKLYDIPTQIWA 596 (705)
Q Consensus 580 Al~LA--rk~gD~~~q~~a 596 (705)
|+... ++.....-..|.
T Consensus 175 AV~~~i~~kq~~~~~e~W~ 193 (906)
T PRK14720 175 AIYRFIKKKQYVGIEEIWS 193 (906)
T ss_pred HHHHHHhhhcchHHHHHHH
Confidence 98764 343443344443
No 188
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.88 E-value=0.18 Score=52.96 Aligned_cols=108 Identities=20% Similarity=0.186 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHH
Q 005266 516 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIW 595 (705)
Q Consensus 516 l~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~ 595 (705)
.|..++-++..|+|.+|...|+.-++-+ -|...++.+++-||+.++.+|+++.|...|..+. +..++.+.--.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~---k~~P~s~KApd 216 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVV---KDYPKSPKAPD 216 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHH---HhCCCCCCChH
Confidence 7888999999999999999999998876 2457889999999999999999999999998764 57888777778
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005266 596 ALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSS 637 (705)
Q Consensus 596 al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~~ 637 (705)
++.-||.+....|+.+.|.. ..+++.+++-.+.++
T Consensus 217 allKlg~~~~~l~~~d~A~a-------tl~qv~k~YP~t~aA 251 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACA-------TLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHH-------HHHHHHHHCCCCHHH
Confidence 89999999999999998887 566666666554433
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=2.8 Score=44.03 Aligned_cols=170 Identities=16% Similarity=0.114 Sum_probs=107.2
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHH----HHHHHHHHHHHhHHHHHhhhhhhhHHh
Q 005266 352 ILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMA----GVYLMLLMQFLENKVAVELTRSGFVEA 427 (705)
Q Consensus 352 ~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~----~~~~~l~~~~Le~~~~~~L~~~~~~~a 427 (705)
..-+..|+-.+.-.++..-...+++.+..+.. -+.+|..+ ..|.. -.|||+..+ +...++...
T Consensus 130 e~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~-~~~~ESsv---~lW~KRl~~Vmy~~~~~l---------lG~kEy~iS 196 (366)
T KOG2796|consen 130 ELQQYLGNPQESLDRLHKLKTVVSKILANLEQ-GLAEESSI---RLWRKRLGRVMYSMANCL---------LGMKEYVLS 196 (366)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHH---HHHHHHHHHHHHHHHHHH---------hcchhhhhh
Confidence 45555666666666777777777765544321 12233333 45543 336655543 223333322
Q ss_pred ---------hh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CChhHHHHHHHHHHHHHHhhCChhhHHHHHH
Q 005266 428 ---------QE-ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT---ESKSMQAMCHAYAAVSYFCIGDAESSSQAID 494 (705)
Q Consensus 428 ---------~~-~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~---~~~~g~a~a~~nlalv~l~~gd~d~~~~ALe 494 (705)
.. +.++.+...||.+.|.-|+.+.|..+|+..-+-+ .+-.+..++..|.+.+|+-.+++.+..++-+
T Consensus 197 ~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~ 276 (366)
T KOG2796|consen 197 VDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFT 276 (366)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHh
Confidence 22 3678999999999999999999999999533322 2234556778899999988777766333322
Q ss_pred hhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 495 LIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 495 li~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
-+-. ..+.+ +.+-++-+++.+..|+..+|...++.+++.-
T Consensus 277 ~i~~--~D~~~-------~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 277 EILR--MDPRN-------AVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hccc--cCCCc-------hhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1111 11222 4467777888889999999999999887764
No 190
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.59 E-value=0.075 Score=37.11 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 465 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~ 465 (705)
|.+++.+|.++...|++++|..+|++++++.++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 457889999999999999999999999998763
No 191
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.54 E-value=13 Score=43.71 Aligned_cols=522 Identities=11% Similarity=0.072 Sum_probs=234.9
Q ss_pred HHhHHHhhhc-ccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhh
Q 005266 9 WGLADYHENK-GEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCR 87 (705)
Q Consensus 9 ~~lAe~~~~~-~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~ 87 (705)
|.|==.|-++ +-+-++|+-++--++..| ..+.| |-. .+..++..++|..-|++.+--....+..-.-.+.
T Consensus 141 W~lyl~Fv~~~~lPets~rvyrRYLk~~P--~~~ee------yie-~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~q 211 (835)
T KOG2047|consen 141 WDLYLKFVESHGLPETSIRVYRRYLKVAP--EAREE------YIE-YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQ 211 (835)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCH--HHHHH------HHH-HHHhccchHHHHHHHHHhcCchhhhhhcccchhh
Confidence 5555555555 566799999999997666 44444 222 2345777788888887643211111111123345
Q ss_pred HHHHHHHHHHHcCCC---hhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhh-c
Q 005266 88 TFSLLSQCYHLVGAI---PPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE-I 163 (705)
Q Consensus 88 ~~~lLA~~y~~~~~~---~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~-~ 163 (705)
.+.+|+++.-+.-+. -..-.+.+.++..=. + .|- .++.-||.-|...|++.+|-.+|++++.-... +
T Consensus 212 lw~elcdlis~~p~~~~slnvdaiiR~gi~rft-------D-q~g-~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr 282 (835)
T KOG2047|consen 212 LWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT-------D-QLG-FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR 282 (835)
T ss_pred HHHHHHHHHHhCcchhcccCHHHHHHhhcccCc-------H-HHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh
Confidence 666677665543222 222223444443222 1 221 12235899999999999999999998864322 2
Q ss_pred CCchHHHH---HHHHHHHHHhc--c--c---CChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhh
Q 005266 164 SYPDLQMF---FATAILHVHLM--Q--W---DDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDY 233 (705)
Q Consensus 164 ~~~~~~~~---~~La~~~~~L~--~--~---~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~ 233 (705)
+...+.=. |.=......+- . + ++..+++-.+.+-+++++ +.+ .+ .++.
T Consensus 283 DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~-----------rr~---~~--------lNsV 340 (835)
T KOG2047|consen 283 DFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN-----------RRP---LL--------LNSV 340 (835)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh-----------ccc---hH--------HHHH
Confidence 22221111 11111111110 0 0 111123333444444442 111 00 0110
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCcc-----cc
Q 005266 234 KNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGK-----EF 308 (705)
Q Consensus 234 ~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~-----~~ 308 (705)
+-. |....|++=++.| .+.+++. .+.+.--..-|++++|.-..|+ +.
T Consensus 341 lLR-Qn~~nV~eW~kRV-------------------~l~e~~~--------~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~ 392 (835)
T KOG2047|consen 341 LLR-QNPHNVEEWHKRV-------------------KLYEGNA--------AEQINTYTEAVKTVDPKKAVGSPGTLWVE 392 (835)
T ss_pred HHh-cCCccHHHHHhhh-------------------hhhcCCh--------HHHHHHHHHHHHccCcccCCCChhhHHHH
Confidence 000 0111222222211 3333332 3333333455555444332221 23
Q ss_pred ccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH-HHHhcCCCCCc
Q 005266 309 LEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQD-ALLKLGITDGV 387 (705)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~-~l~~~~~~~~~ 387 (705)
++++|-.|+..++.-+ +.-.. .-.=++....-+-||.--+.-=....+++.|.+.++.|...=.. .++...-+.++
T Consensus 393 faklYe~~~~l~~aRv-ifeka--~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARV-IFEKA--TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHhcCcHHHHHH-HHHHh--hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 3334444433332111 00000 00011222233444444444444455566666666666543100 01111111111
Q ss_pred cccchhhh-HHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhh--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 005266 388 REVDLQHS-AIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQE--ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 464 (705)
Q Consensus 388 ~e~~l~~~-~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~--~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~ 464 (705)
..-+..+ .+| +.|.= +.|..=..+=|+.-+....+ .+.|++-+..|+.+.-..-|++|-..|++-+.++.
T Consensus 470 -Q~rlhrSlkiW--s~y~D----leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 470 -QARLHRSLKIW--SMYAD----LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred -HHHHHHhHHHH--HHHHH----HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 1112112 788 55542 12222111112333333333 37899999999999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHh-hCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 465 SKSMQAMCHAYAAVSYFC-IGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 465 ~~~g~a~a~~nlalv~l~-~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
=+..-..=...+.--.-+ .|.. .++|-+||+..-..|. +..-+. .|..++..--..|--..|...+++|-...
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~k--lEraRdLFEqaL~~Cp---p~~aKt-iyLlYA~lEEe~GLar~amsiyerat~~v 616 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTK--LERARDLFEQALDGCP---PEHAKT-IYLLYAKLEEEHGLARHAMSIYERATSAV 616 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCC---HHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 544222222222111111 1221 3333333333211111 111011 23333333333444445555666543322
Q ss_pred HhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 544 HNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 544 ~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
--.+...+.-..+..+..-.|.. .-+..|++|.+. ++|.....-++ -.+++-...|+.++|++.|....++
T Consensus 617 ----~~a~~l~myni~I~kaae~yGv~-~TR~iYekaIe~---Lp~~~~r~mcl-rFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 617 ----KEAQRLDMYNIYIKKAAEIYGVP-RTREIYEKAIES---LPDSKAREMCL-RFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred ----CHHHHHHHHHHHHHHHHHHhCCc-ccHHHHHHHHHh---CChHHHHHHHH-HHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 12233344444444444444533 345677777665 55544444443 4577888888888888877665443
No 192
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.44 E-value=0.085 Score=37.97 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccC
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 549 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn 549 (705)
+|..+|.++...|++++|.++++++|.+.. +.++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~-~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR-DPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH-HCT-
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-cccC
Confidence 578899999999999999999999999873 4544
No 193
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.29 E-value=2.1 Score=53.63 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=60.1
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhh-HHHHHHHHHHHHHHHHhHHHHHhhh-hhhhHHhhh
Q 005266 352 ILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHS-AIWMAGVYLMLLMQFLENKVAVELT-RSGFVEAQE 429 (705)
Q Consensus 352 ~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~-~~w~~~~~~~l~~~~Le~~~~~~L~-~~~~~~a~~ 429 (705)
.+-...++.++|.+-.++||..|+ +.+ -+.+ .+|++ |++ ||+..-.+=+ ..-+..|++
T Consensus 1466 af~LelsEiekAR~iaerAL~tIN-------~RE------eeEKLNiWiA--~lN-----lEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1466 AFHLELSEIEKARKIAERALKTIN-------FRE------EEEKLNIWIA--YLN-----LENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHhhhhhhHHHHHHHHHHhhhCC-------cch------hHHHHHHHHH--HHh-----HHHhhCcHHHHHHHHHHHHH
Confidence 344567889999999999999851 111 1235 89954 544 3444432211 223445677
Q ss_pred hhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 005266 430 ACESM-IEMLRGQYAHSVGCYSEAAFHYVEAAKITE 464 (705)
Q Consensus 430 ~~~a~-~~~llG~~~~~~g~~~eA~~~f~~Al~l~~ 464 (705)
.|+|. +|.-|--+|...+.+++|.+.|+.-++-++
T Consensus 1526 ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~ 1561 (1710)
T KOG1070|consen 1526 YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG 1561 (1710)
T ss_pred hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence 77754 444577788888899999999988777666
No 194
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.26 E-value=0.63 Score=46.73 Aligned_cols=96 Identities=19% Similarity=0.139 Sum_probs=76.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHH
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHF 517 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~ 517 (705)
.++....-.|++++|+.+.+.++....+....+.+..++|.|.+..|.+|..-..|+.+..- +. .+..--
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--------~w--~~~~~e 163 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--------SW--AAIVAE 163 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--------cH--HHHHHH
Confidence 45667777899999999999999998998999999999999999988876655555522221 11 133456
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 518 AYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 518 ~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
..|-++..+|+..+|+..+.+|+..-
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 67999999999999999999999883
No 195
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.24 E-value=1.6 Score=51.88 Aligned_cols=160 Identities=14% Similarity=0.112 Sum_probs=90.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHH
Q 005266 437 MLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLH 516 (705)
Q Consensus 437 ~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al 516 (705)
+--+..+...|.++||+..|.+.-+- --+.-.|...|..++ |+++.+. .|++-+ -+.|
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR~-----------DLlNKlyQs~g~w~e---A~eiAE~-----~DRiHL---r~Ty 861 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKRY-----------DLLNKLYQSQGMWSE---AFEIAET-----KDRIHL---RNTY 861 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHhcccHHH---HHHHHhh-----ccceeh---hhhH
Confidence 34455666777777777777764331 112234444455433 3332222 344444 2456
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHH----------------HHHHHHHHHHHCCChHHHHHHHH--
Q 005266 517 FAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ----------------YLTILGNLALALHDTVQAREILR-- 578 (705)
Q Consensus 517 ~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~----------------aL~~LG~i~~~lg~~~qA~~~~~-- 578 (705)
|..+.-+-..++...|+++++++=.-+. .-+++... .+.--|.-.-..|+.+.|...|.
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~haf---ev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAF---EVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHH---HHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 6666666666777777777765522111 01111111 11122333444555555555544
Q ss_pred -----------------HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 579 -----------------SSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 579 -----------------~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
+|-++|+++||. -+...|++.|...|+..+|.-.|.++..++-
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~----AAcYhlaR~YEn~g~v~~Av~FfTrAqafsn 998 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDK----AACYHLARMYENDGDVVKAVKFFTRAQAFSN 998 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 455788999994 4556789999999999999999998877664
No 196
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.08 E-value=0.37 Score=51.71 Aligned_cols=151 Identities=18% Similarity=0.177 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHH
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEAS 514 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~ 514 (705)
...+.|.++...|++++|+...... ++.. . ..-...+++..+++|-..+-++-+.... +|. ..
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE--~--~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~------~l 166 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG----GSLE--L--LALAVQILLKMNRPDLAEKELKNMQQID---EDS------IL 166 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT----TCHH--H--HHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCH------HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc----Cccc--H--HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcH------HH
Confidence 3446678888889999888766542 2222 2 2223456777888888777666665541 221 23
Q ss_pred HHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 515 LHFAYGLLLMRQQ--DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 515 al~~lG~~~~~~g--~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
+....+++.+..| ++++|.-.+++- + ...|+ +...++.++.++..+|++++|.+.+.+|+. ++.+|
T Consensus 167 ~qLa~awv~l~~g~e~~~~A~y~f~El---~-~~~~~---t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~--- 234 (290)
T PF04733_consen 167 TQLAEAWVNLATGGEKYQDAFYIFEEL---S-DKFGS---TPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPND--- 234 (290)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHH---H-CCS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCH---
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHH---H-hccCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCC---
Confidence 4445555566666 599999999983 3 22333 345789999999999999999999999874 33333
Q ss_pred HHHHHHHHHHHHHHcCCchHHHH
Q 005266 593 QIWALSVLTALYQQLGDRGNEME 615 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~A~e 615 (705)
..++.++.-+....|++..+.+
T Consensus 235 -~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 235 -PDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp -HHHHHHHHHHHHHTT-TCHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhHHH
Confidence 4577788888899999955444
No 197
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.05 E-value=5.2 Score=37.34 Aligned_cols=166 Identities=25% Similarity=0.238 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHH-HHHhhCChhh----HHHHHHhhccccccCCccchh
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAV-SYFCIGDAES----SSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlal-v~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~ 509 (705)
.....|.+....+.+++|...+..++....... ......+. ++...|+++. +.+++. ..+. ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~-------~~~ 165 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPD---LAEALLALGALYELGDYEEALELYEKALE-LDPE-------LNE 165 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCC-------ccc
Confidence 344556666666666777777766665544321 11111122 4445555544 333333 2110 000
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
.+..++..+..+...+++++|...+.+++.... .. ....+..+|..+...++..+|...+..++.....
T Consensus 166 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--- 234 (291)
T COG0457 166 --LAEALLALGALLEALGRYEEALELLEKALKLNP-DD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--- 234 (291)
T ss_pred --hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCc-cc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---
Confidence 233455555556677778888888887777752 11 3346667777777777777777777777766655
Q ss_pred hhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 590 IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 590 ~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
.......++..+...|+..++............
T Consensus 235 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 235 ---NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred ---cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 233334444555555555555555544444333
No 198
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=1.2 Score=47.34 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
.|....+.|+..+..|+|++|...++.|++.+ |-..+++ ..++-.|++.|++.+|.++-..-...
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvs----GyqpllA---YniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVS----GYQPLLA---YNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhc----CCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 37789999999999999999999999999884 3334544 35678899999999999877665443
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.87 E-value=0.15 Score=41.87 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=52.5
Q ss_pred HHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccc
Q 005266 54 LLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSS 118 (705)
Q Consensus 54 L~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~ 118 (705)
.+...++++.|...+++++.+.|..+ ..++..+.||.++|.+..|...+.++++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDP-------ELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccc-------hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 34678999999999999999988887 88899999999999999999999999998874
No 200
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=0.58 Score=49.16 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=77.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh-HHHHHHhhccccccCCccchhhhHHH
Q 005266 436 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGVREEAS 514 (705)
Q Consensus 436 ~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~-~~~ALeli~~~~~~~~~~~g~~~qA~ 514 (705)
.|-.+.-+...|+|++|...|..=++..++..-...+..|+|-++..+|++++ ...-+..++. .|.+.. -..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~---~P~s~K----Apd 216 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD---YPKSPK----APD 216 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh---CCCCCC----ChH
Confidence 34455566778899999999999999988877777889999999999999877 2222222332 343322 136
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
++|-+|.+....|+.++|...|++..+-+
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999987765
No 201
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.63 E-value=16 Score=41.60 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 579 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~ 579 (705)
|...++++|.++..+|++++|+..+.+|..+-+. .-|++-+ ..--.+-+.+|+..-|....++
T Consensus 618 r~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs-~v~~~A~----~lavyidL~~G~~q~al~~lk~ 680 (696)
T KOG2471|consen 618 RGVLFANLAAALALQGHHDQAKSLLTHAATLLHS-LVNVQAT----VLAVYIDLMLGRSQDALARLKQ 680 (696)
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhc-cccHHHH----HHHHHHHHhcCCCcchHHHHHh
Confidence 4668999999999999999999999999999874 3343332 2222455677877766665554
No 202
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.58 E-value=0.64 Score=46.16 Aligned_cols=104 Identities=20% Similarity=0.110 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccch
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTING 508 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g 508 (705)
..++.-+|.++.+.|++++|..+|.++..-..+..-..-+.+++-.+.+..||++. .++|-.++... +|..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~----~d~~- 110 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG----GDWE- 110 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc----chHH-
Confidence 44566899999999999999999999887776666666667777777777889877 45555544442 2211
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 509 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 509 ~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
. +.-.-...|+.++.+++|.+|-+.|-+++.-.
T Consensus 111 ~--~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 111 R--RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred H--HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 1 23345566888999999999999999886554
No 203
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.55 E-value=17 Score=41.68 Aligned_cols=235 Identities=18% Similarity=0.124 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHhcCCCCh----------HHHHHHHHHHHHHHHHHHHhcCCC-CCcc----c----cchhhhHHHHHHH
Q 005266 342 VYALVDLMVVILGRPKGLF----------KECMQRIQSGMQTIQDALLKLGIT-DGVR----E----VDLQHSAIWMAGV 402 (705)
Q Consensus 342 ~~aL~yll~~~~~~~~g~~----------~ka~k~l~~al~~i~~~l~~~~~~-~~~~----e----~~l~~~~~w~~~~ 402 (705)
.+|-+.++.++..-..+++ .+|-+-+++-.+.++....+.... ++.+ + .+.......++++
T Consensus 94 ~~AE~~L~~Ail~~~~es~~~~iKg~~~lRkay~~y~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~sgv 173 (468)
T PF10300_consen 94 CYAEALLLKAILTFLSESLVSFIKGGYKLRKAYKIYKECMKIIEKLKKKAKSSSPGEPDSHDSWDDDSTKPIDEFFESGV 173 (468)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccccccccccccchhHHHHHHhH
Confidence 6788889998888877763 377777777777766543322211 0000 0 0011112233333
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hh---HHHHHHHHHHH
Q 005266 403 YLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KS---MQAMCHAYAAV 478 (705)
Q Consensus 403 ~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~-~~---g~a~a~~nlal 478 (705)
++-+-.. ........|.+.-++..+-.. |+=+.++....+|.+ .++ +. .-.....+..+
T Consensus 174 ~~G~G~f---------------~L~lSlLPp~~~kll~~vGF~-gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~ 236 (468)
T PF10300_consen 174 YFGFGLF---------------NLVLSLLPPKVLKLLSFVGFS-GDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVV 236 (468)
T ss_pred HHHHHHH---------------HHHHHhCCHHHHHHHhhcCcC-CcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHH
Confidence 3211111 111112345555555555444 899999999999876 333 22 11122222222
Q ss_pred HHHh-h--CCh--hhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHH
Q 005266 479 SYFC-I--GDA--ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 553 (705)
Q Consensus 479 v~l~-~--gd~--d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~ 553 (705)
.... . ++. +.+++.|+-... ++|++ +..++..|..+..+|+.++|.+.+++|+... ..-+|+.
T Consensus 237 ~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s-------~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q---~~~~Ql~ 304 (468)
T PF10300_consen 237 PSFLGIDGEDVPLEEAEELLEEMLK--RYPNS-------ALFLFFEGRLERLKGNLEEAIESFERAIESQ---SEWKQLH 304 (468)
T ss_pred HHHcCCcccCCCHHHHHHHHHHHHH--hCCCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHhccch---hhHHhHH
Confidence 2222 1 111 115555554444 45663 5688999999999999999999999998543 4467888
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCc
Q 005266 554 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDR 610 (705)
Q Consensus 554 a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~ 610 (705)
...+.-+|+.|.-+++.++|.+++..-.+..+- ..+.-....|-.+...|+.
T Consensus 305 ~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-----Ska~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 305 HLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-----SKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHHhhccc
Confidence 899999999999999999999888776654332 2344444557888888988
No 204
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.54 E-value=0.15 Score=35.50 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 005266 554 SQYLTILGNLALALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 554 a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LAr 585 (705)
|.++..+|.+|..+|++++|.+++++++++.+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 46789999999999999999999999998865
No 205
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.52 E-value=1.8 Score=54.12 Aligned_cols=170 Identities=16% Similarity=0.091 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh--hCChhhHHHHHHhhccccccCCccch
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC--IGDAESSSQAIDLIGPVYQMKDTING 508 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~--~gd~d~~~~ALeli~~~~~~~~~~~g 508 (705)
+.+..-.-+=.+....++.++|...+++|++...=+..+...++|+|++-+. -|+.+++.+ -|+++|..++.
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k---VFeRAcqycd~--- 1529 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK---VFERACQYCDA--- 1529 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH---HHHHHHHhcch---
Confidence 3333333344556677899999999999998754455555566666665554 243333333 23333333321
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcC
Q 005266 509 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 588 (705)
Q Consensus 509 ~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~g 588 (705)
--.|.-+.-.|...+++++|-++|+.-++-+ + + +...+...|+..++..+-+.|...+.+||.-.-|..
T Consensus 1530 ----~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~---q---~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1530 ----YTVHLKLLGIYEKSEKNDEADELLRLMLKKF-G---Q---TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred ----HHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-c---c---hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 1145555566778889999999999888776 2 2 234778888888998888889999999987776633
Q ss_pred ChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005266 589 DIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 589 D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
. .....-.+.+.-..||+++++..|+-..
T Consensus 1599 H----v~~IskfAqLEFk~GDaeRGRtlfEgll 1627 (1710)
T KOG1070|consen 1599 H----VEFISKFAQLEFKYGDAERGRTLFEGLL 1627 (1710)
T ss_pred h----HHHHHHHHHHHhhcCCchhhHHHHHHHH
Confidence 2 3333455677778899988777666443
No 206
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.45 E-value=1.5 Score=49.68 Aligned_cols=200 Identities=13% Similarity=0.055 Sum_probs=119.9
Q ss_pred ccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCC-ccccchhhhHHHHH---HHHHHHHHHHHh
Q 005266 337 LPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDG-VREVDLQHSAIWMA---GVYLMLLMQFLE 412 (705)
Q Consensus 337 Lpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~-~~e~~l~~~~~w~~---~~~~~l~~~~Le 412 (705)
|.....|+-+|++.+.- ......++++++++|++.-+..+.+...... .+.. ..|.. +++
T Consensus 195 Lei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~-----e~~~~Rdt~~~--------- 258 (539)
T PF04184_consen 195 LEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW-----EAWHRRDTNVL--------- 258 (539)
T ss_pred HHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh-----hhhhccccchh---------
Confidence 44444677777777653 2344589999999999986665554332211 0100 11110 111
Q ss_pred HHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHH
Q 005266 413 NKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQA 492 (705)
Q Consensus 413 ~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~A 492 (705)
..+..-+++.+...|+.+||..+|+.-++.++..+. -.+.-|+...++..+.+++....
T Consensus 259 --------------------~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 259 --------------------VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-LNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred --------------------hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-hhHHHHHHHHHHhcCCHHHHHHH
Confidence 122346899999999999999999998887764321 22566777777888888888888
Q ss_pred HHhhccccccCCccchhhhHHHHHHHHHHHHHHhc-C---H------------HHHHHHHHHHHHHHHhcccCHHHHHHH
Q 005266 493 IDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ-D---F------------QEARNRLAKGLQIAHNHMGNLQLVSQY 556 (705)
Q Consensus 493 Leli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g-~---~------------~eA~~~L~eAL~la~~e~gn~~l~a~a 556 (705)
|+-+..+ ..|+ -|...|.-++...+.. + . ..|.+.+++|+ ..||+.-- +
T Consensus 318 L~kYdDi-~lpk-------SAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAv------efNPHVp~-Y 382 (539)
T PF04184_consen 318 LAKYDDI-SLPK-------SATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAV------EFNPHVPK-Y 382 (539)
T ss_pred HHHhccc-cCCc-------hHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHH------HhCCCCch-h
Confidence 8866553 2233 2555566565554422 1 1 12344455443 34655533 2
Q ss_pred HHHH------HHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 557 LTIL------GNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 557 L~~L------G~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
|.-+ =+-+...|| .||..++--.++-.|+..+
T Consensus 383 LLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~veG 420 (539)
T PF04184_consen 383 LLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVEG 420 (539)
T ss_pred hhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHh
Confidence 2111 122445565 8899999999988888776
No 207
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.22 E-value=7.1 Score=39.42 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 593 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q 593 (705)
.+...++.+.+..|++++|...|+.++... .+..+.+.+-.+|+-+.+.+|..++|.+.++. ..+..+-
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t-------~~~~~w~ 158 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT----KDENLKALAALRLARVQLQQKKADAALKTLDT-------IKEESWA 158 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-------cccccHH
Confidence 355667788889999999999999997664 35568888888999999998887776665543 3333233
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 594 IWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 594 ~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
...-..-|+++...||..+|+..|+.+...
T Consensus 159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 159 AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 333356689999999999999998887766
No 208
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.22 E-value=1.6 Score=44.68 Aligned_cols=178 Identities=14% Similarity=0.146 Sum_probs=97.0
Q ss_pred hhhhH--HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh-HHHHHHhhc
Q 005266 421 RSGFV--EAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES-SSQAIDLIG 497 (705)
Q Consensus 421 ~~~~~--~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~-~~~ALeli~ 497 (705)
|-|+. .|.+|.-|.+.+.+|.|+...|+|+.|...|...+++++... .+.+|=|+..--.|++.- -+..+.-.+
T Consensus 85 R~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~---Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 85 RNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred hhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch---HHHhccceeeeecCchHhhHHHHHHHHh
Confidence 34444 356778899999999999999999999999999999987632 122222222211222211 000000000
Q ss_pred cccccCCcc-------------------chhhhH-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHH
Q 005266 498 PVYQMKDTI-------------------NGVREE-------ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ 551 (705)
Q Consensus 498 ~~~~~~~~~-------------------~g~~~q-------A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~ 551 (705)
. .|+|. ..+.++ -..|+.. -+..|+..+ +..+.++..-++....-.+
T Consensus 162 ~---D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV---~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae 234 (297)
T COG4785 162 D---DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIV---EFYLGKISE-ETLMERLKADATDNTSLAE 234 (297)
T ss_pred c---CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHH---HHHHhhccH-HHHHHHHHhhccchHHHHH
Confidence 0 01110 000000 0112222 223343322 1222222222211112224
Q ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCc
Q 005266 552 LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDR 610 (705)
Q Consensus 552 l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~ 610 (705)
....++.-||.-++..|+..+|...++-| +|....+-...-+++..|++++....+.
T Consensus 235 ~LTEtyFYL~K~~l~~G~~~~A~~LfKLa--iannVynfVE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 235 HLTETYFYLGKYYLSLGDLDEATALFKLA--VANNVYNFVEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHhccccchh
Confidence 45567888999999999999998888754 6667666667777888888877665443
No 209
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.94 E-value=0.22 Score=35.99 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 545 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~ 545 (705)
|.++.++|.++..+|++++|+.++++++.+..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 568999999999999999999999999999843
No 210
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.93 E-value=4.3 Score=43.09 Aligned_cols=135 Identities=18% Similarity=0.126 Sum_probs=86.4
Q ss_pred cccHhHHhHHHHHHhccCCCC-ChHHHH--HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhc-------CCchhhhhhh
Q 005266 18 KGEIGKAVKCLEAICQSHVSF-LPIIEV--KTRLRISTLLLKHTHNVNHAKSHLERSQLLLKA-------IPSCFELKCR 87 (705)
Q Consensus 18 ~~~i~~ai~CLea~~~~~~~~-~p~~EA--~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~-------i~~~~dlK~~ 87 (705)
++++..|.+|+.-+=.....+ |..+|- +...-+|.-+++--++++.|..-|++|+.++.. .+...++|+.
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 356677777776654433112 444443 333445555555555899999999999999633 2456699999
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 005266 88 TFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (705)
Q Consensus 88 ~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~ 159 (705)
...+|+++|...+....... ..+.++...+ .+++....|.+.+ ++....+|...+.+.|..++.-
T Consensus 86 iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~---e~~~~~~~~~L~l---~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEK-ALNALRLLES---EYGNKPEVFLLKL---EILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHH-HHHHHHHHHH---hCCCCcHHHHHHH---HHHhccCChhHHHHHHHHHHHh
Confidence 99999999999987754432 3334444442 4444444222333 3344488999999999888863
No 211
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.93 E-value=24 Score=41.56 Aligned_cols=117 Identities=13% Similarity=0.200 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Q 005266 473 HAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 548 (705)
Q Consensus 473 ~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g 548 (705)
.-|.-.|-+..|++.+ +.+|...+.|. ..+|+ . ...|...|..|-..|+.+.|+..+.+|.+.- -+
T Consensus 350 ~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~-ka~Gs-~-----~~Lw~~faklYe~~~~l~~aRvifeka~~V~---y~ 419 (835)
T KOG2047|consen 350 EEWHKRVKLYEGNAAEQINTYTEAVKTVDPK-KAVGS-P-----GTLWVEFAKLYENNGDLDDARVIFEKATKVP---YK 419 (835)
T ss_pred HHHHhhhhhhcCChHHHHHHHHHHHHccCcc-cCCCC-h-----hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC---cc
Confidence 4455566666677655 77887777775 22342 2 2367888999999999999999999998773 23
Q ss_pred CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH------cCChhhHHHHHHH
Q 005266 549 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK------LYDIPTQIWALSV 599 (705)
Q Consensus 549 n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk------~gD~~~q~~al~~ 599 (705)
-..-.+.++-.-|+.-++..+.+.|.+..+.|..+=+. -+..+.|...+..
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 33345667777777778878888888888888766444 2334455554444
No 212
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.91 E-value=3 Score=44.30 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHh-------cccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQ-DFQEARNRLAKGLQIAHN-------HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 513 A~al~~lG~~~~~~g-~~~eA~~~L~eAL~la~~-------e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
+..+|+.|.-....+ ++++|..+|++|..+.+. ...-..+-..++..|+.+|+..+..+-..+ +..++.+.
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l 113 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHH
Confidence 668999999999999 999999999999999532 111125778899999999999988765555 34444444
Q ss_pred -HHcCChhhHH-HHHHHHHHHHHHcCCchHHHHHHHHH
Q 005266 585 -KKLYDIPTQI-WALSVLTALYQQLGDRGNEMENDEYR 620 (705)
Q Consensus 585 -rk~gD~~~q~-~al~~L~~l~~~~Gd~~~A~e~~~~~ 620 (705)
++.|+.++.. +.+..+.+ .++.+...+.....
T Consensus 114 ~~e~~~~~~~~~L~l~il~~----~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 114 ESEYGNKPEVFLLKLEILLK----SFDEEEYEEILMRM 147 (278)
T ss_pred HHhCCCCcHHHHHHHHHHhc----cCChhHHHHHHHHH
Confidence 5556655444 44444433 56665555544433
No 213
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.86 E-value=1.9 Score=41.28 Aligned_cols=91 Identities=20% Similarity=0.112 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhh
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
.+..++-.|.-.+..|+|++|..+|+.-....+-..--..+.++++-+|...|+++....+.+.|-.+ +|.+.. +
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~hp~-v-- 83 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTHPN-V-- 83 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCC-c--
Confidence 35667788999999999999999999866666554445577999999999999987733333333222 344321 2
Q ss_pred HHHHHHHHHHHHHHhcC
Q 005266 512 EASLHFAYGLLLMRQQD 528 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~ 528 (705)
..++|..|++++.+.+
T Consensus 84 -dYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 84 -DYAYYMRGLSYYEQDE 99 (142)
T ss_pred -cHHHHHHHHHHHHHhh
Confidence 5689999999999876
No 214
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.69 E-value=0.48 Score=51.09 Aligned_cols=89 Identities=19% Similarity=0.088 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHH
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEA 513 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA 513 (705)
-.|--+..+|.|+||..||.+++.+.+-+. ....|=|+.|+....+.. |+.|++|=+. . .
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~Np---V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~---------Y----~ 165 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNP---VYHINRALAYLKQKSFAQAEEDCEAAIALDKL---------Y----V 165 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCc---cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH---------H----H
Confidence 468999999999999999999998877321 124555666666555422 7777764222 1 2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQI 542 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~l 542 (705)
-+|...|.+.+..|...||+.-++.+|.+
T Consensus 166 KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 166 KAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 36777788888888888888888888888
No 215
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=9.5 Score=40.30 Aligned_cols=155 Identities=15% Similarity=0.101 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhh
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
....+.+-|.+++--|++++|+.+.... + ..++.++.+ .+.++..+.|-+++.++-.... ++-.-+.-
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~i----ded~tLtQ 174 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNV--QILLKMHRFDLAEKELKKMQQI----DEDATLTQ 174 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcc----chHHHHHH
Confidence 3456666777888888888887665541 1 112222211 2233333344455555544433 11000100
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 590 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn-~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~ 590 (705)
-|.+|..++. -.+.+++|.-.+++ .+. ...+...++-++-++..+|++++|+..++.|| -++.+|+
T Consensus 175 LA~awv~la~---ggek~qdAfyifeE--------~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL--~kd~~dp 241 (299)
T KOG3081|consen 175 LAQAWVKLAT---GGEKIQDAFYIFEE--------LSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL--DKDAKDP 241 (299)
T ss_pred HHHHHHHHhc---cchhhhhHHHHHHH--------HhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHH--hccCCCH
Confidence 1334433321 12235555555553 222 34556678888888888888888888888874 5666663
Q ss_pred hhHHHHHHHHHHHHHHcCCchHHHH
Q 005266 591 PTQIWALSVLTALYQQLGDRGNEME 615 (705)
Q Consensus 591 ~~q~~al~~L~~l~~~~Gd~~~A~e 615 (705)
.++.++--.-...|.+.++.+
T Consensus 242 ----etL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 242 ----ETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred ----HHHHHHHHHHHHhCCChHHHH
Confidence 334444444556677665555
No 216
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.39 E-value=0.35 Score=36.23 Aligned_cols=34 Identities=12% Similarity=-0.009 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChh
Q 005266 434 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 467 (705)
Q Consensus 434 ~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~ 467 (705)
.+.+.+|..+...|++++|+..|+++++..+++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 4677899999999999999999999999988754
No 217
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.32 E-value=1.6 Score=44.72 Aligned_cols=93 Identities=18% Similarity=0.123 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcC---C----hhhHHHHHHHH
Q 005266 528 DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY---D----IPTQIWALSVL 600 (705)
Q Consensus 528 ~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~g---D----~~~q~~al~~L 600 (705)
.+++|.+.+.-|+--+.-...++.-.|.....++|+|...|+.++....++.|+....+.- + ...+.-.+-.+
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 4666666666676666434557778899999999999999998888888888888777642 1 22446677889
Q ss_pred HHHHHHcCCchHHHHHHHHH
Q 005266 601 TALYQQLGDRGNEMENDEYR 620 (705)
Q Consensus 601 ~~l~~~~Gd~~~A~e~~~~~ 620 (705)
|++++..|+.++|..++..-
T Consensus 172 geL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 99999999999988876543
No 218
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.30 E-value=0.33 Score=55.43 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=75.6
Q ss_pred hhhcccHhHHhHHHHHHhccCC--CCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Q 005266 15 HENKGEIGKAVKCLEAICQSHV--SFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLL 92 (705)
Q Consensus 15 ~~~~~~i~~ai~CLea~~~~~~--~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lL 92 (705)
.|-.|+.-.|++||.-++...| ++-|. .++|.+|+.+| =...|--.|.+++.|+-+-| -.++.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~------v~la~~~~~~~-~~~da~~~l~q~l~~~~sep-------l~~~~~ 682 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPL------VNLANLLIHYG-LHLDATKLLLQALAINSSEP-------LTFLSL 682 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccH------HHHHHHHHHhh-hhccHHHHHHHHHhhcccCc-------hHHHhc
Confidence 5666799999999999997655 33344 47999999999 67778788888888888888 566889
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhccc
Q 005266 93 SQCYHLVGAIPPQKLILYKALDLTSS 118 (705)
Q Consensus 93 A~~y~~~~~~~~ak~~l~kai~~~~~ 118 (705)
.+.|...+++..|.+.++.|+++++.
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999984
No 219
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=92.26 E-value=8.3 Score=38.78 Aligned_cols=146 Identities=13% Similarity=0.092 Sum_probs=94.4
Q ss_pred HHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Q 005266 473 HAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 548 (705)
Q Consensus 473 ~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g 548 (705)
.+.+|....+.|++.+ +.+++. ++ |.+| +..+..++.+.+..+++.+|...|+.-.+. +.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qals--G~---fA~d-------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~-~p--- 155 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALS--GI---FAHD-------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEY-NP--- 155 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhc--cc---cCCC-------HHHHHHHHHHHHhhccHHHHHHHHHHHhhc-CC---
Confidence 4556777777899766 677765 22 2332 668888999999999999999999865444 21
Q ss_pred CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Q 005266 549 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 628 (705)
Q Consensus 549 n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~ 628 (705)
..-.......+|-++..+|.+++|+..++.++.-. ++. ++. ...+....+.|+..+|.+.+ ....|.+.
T Consensus 156 -a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y---pg~--~ar--~~Y~e~La~qgr~~ea~aq~---~~v~d~~~ 224 (251)
T COG4700 156 -AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY---PGP--QAR--IYYAEMLAKQGRLREANAQY---VAVVDTAK 224 (251)
T ss_pred -ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC---CCH--HHH--HHHHHHHHHhcchhHHHHHH---HHHHHHHH
Confidence 12334456678999999999999998888876543 332 222 24577888899877666533 33444433
Q ss_pred HHHHHhhcchhhHHHHhhh
Q 005266 629 KRLADAYSSIHHIELISKV 647 (705)
Q Consensus 629 ~~~~~a~~~~~h~~l~~~~ 647 (705)
+.+.-- .-||.+-++..
T Consensus 225 r~~~H~--rkh~reW~~~A 241 (251)
T COG4700 225 RSRPHY--RKHHREWIKTA 241 (251)
T ss_pred hcchhH--HHHHHHHHHHH
Confidence 322211 24566544433
No 220
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=0.46 Score=49.05 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=67.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHH
Q 005266 440 GQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASL 515 (705)
Q Consensus 440 G~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~a 515 (705)
|--+..-.+|+.|..+|.+|+.+++... .=..|=|+.|+...+++. +.+|+++.... +-+
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~---~Y~tnralchlk~~~~~~v~~dcrralql~~N~-------------vk~ 80 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVA---SYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL-------------VKA 80 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcc---hhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH-------------HHH
Confidence 5555666789999999999999987731 013344444554455544 88998855442 568
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 005266 516 HFAYGLLLMRQQDFQEARNRLAKGLQIAHN 545 (705)
Q Consensus 516 l~~lG~~~~~~g~~~eA~~~L~eAL~la~~ 545 (705)
+|++|...+....|++|...|++|..+.+.
T Consensus 81 h~flg~~~l~s~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 81 HYFLGQWLLQSKGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999853
No 221
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.70 E-value=14 Score=38.43 Aligned_cols=164 Identities=19% Similarity=0.141 Sum_probs=98.9
Q ss_pred cCCHHHHHHHHHHHHHh---cCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHH
Q 005266 446 VGCYSEAAFHYVEAAKI---TESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFA 518 (705)
Q Consensus 446 ~g~~~eA~~~f~~Al~l---~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~ 518 (705)
...++.|-..|.+|... .++..--+.+.+-.+-.|.. +++.+ +++|++++...|+|.- -|..+.-
T Consensus 47 aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~-------aAk~~~~ 118 (288)
T KOG1586|consen 47 AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTM-------AAKHHIE 118 (288)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHH-------HHhhhhh
Confidence 33444444445444433 22333333333333333433 34444 5666666666555431 2556777
Q ss_pred HHHHHHHh-cCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 005266 519 YGLLLMRQ-QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWAL 597 (705)
Q Consensus 519 lG~~~~~~-g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al 597 (705)
+|-.+-.. .++..|+.++++|-.-...+..+ ..--.++.-.++.--.++++.+|.+.|++ +++.+-|.+...|+.
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~-ssANKC~lKvA~yaa~leqY~~Ai~iyeq---va~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESV-SSANKCLLKVAQYAAQLEQYSKAIDIYEQ---VARSSLDNNLLKYSA 194 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccchHHHhHH
Confidence 77777655 78999999999998887433333 45556777778888888999999999985 566677776667765
Q ss_pred H--HH--HHHHHHcCCchHHHHHHHHHH
Q 005266 598 S--VL--TALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 598 ~--~L--~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
- .| |-.|...+|.-.+....+-+.
T Consensus 195 KdyflkAgLChl~~~D~v~a~~ALeky~ 222 (288)
T KOG1586|consen 195 KDYFLKAGLCHLCKADEVNAQRALEKYQ 222 (288)
T ss_pred HHHHHHHHHHhHhcccHHHHHHHHHHHH
Confidence 2 11 334444488866666555544
No 222
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.54 E-value=20 Score=37.62 Aligned_cols=176 Identities=16% Similarity=0.092 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~ 510 (705)
..+.-+|--|.-.+..|++++|...|+...+..+-......+.+.++-.+-..++++...-.++.|-.. +|++ ..
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~-~n-- 106 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTH-PN-- 106 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCC-CC--
Confidence 457778899999999999999999999877766554444667888888888888877744444443332 3332 11
Q ss_pred hHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHhcccCHHHHHHH--------------HHHHHHHHHHCCChH
Q 005266 511 EEASLHFAYGLLLMRQ-----QDFQEARNRLAKGLQIAHNHMGNLQLVSQY--------------LTILGNLALALHDTV 571 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~-----g~~~eA~~~L~eAL~la~~e~gn~~l~a~a--------------L~~LG~i~~~lg~~~ 571 (705)
...++|..|+.++.. .+...+++.+..--.+- ..--|++-...+ =..+|..|+..|.+.
T Consensus 107 -~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i-~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 107 -ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELV-QRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred -hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHH-HHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 367888889888763 33444444444333332 223344433333 345678888888887
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHH
Q 005266 572 QAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEN 616 (705)
Q Consensus 572 qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~ 616 (705)
.|..-++..+. .-.+-...--++-.|.+.|...|-.+.|...
T Consensus 185 AA~nR~~~v~e---~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 185 AAINRFEEVLE---NYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHHHHHHh---ccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 77776666554 4666666788889999999999988877663
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.53 E-value=6.2 Score=37.08 Aligned_cols=101 Identities=23% Similarity=0.151 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCH----------------HHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005266 518 AYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL----------------QLVSQYLTILGNLALALHDTVQAREILRSSL 581 (705)
Q Consensus 518 ~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~----------------~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al 581 (705)
..|......|+..++...+++++.+.+ ...-+ ..-..++..++..+...|++++|...+++++
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~-G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYR-GDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT---SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhC-CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 335455567788888888888888773 21111 2233577888999999999999999999998
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 582 TLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 582 ~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
.+ |+. --.+...|-++|...|++..|.+.|+...+...
T Consensus 90 ~~-----dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 90 AL-----DPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HH-----STT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred hc-----CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 66 222 233445567899999999999999998876665
No 224
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.31 E-value=11 Score=39.86 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 005266 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (705)
Q Consensus 344 aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~ 423 (705)
....++.++++...|++++|.+-+..+..+ +- ..+ .+++.+++.-.+ +-..+
T Consensus 108 ~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-E~-------------------~Al--~VqI~lk~~r~d------~A~~~ 159 (299)
T KOG3081|consen 108 LIDLLLAAIIYMHDGDFDEALKALHLGENL-EA-------------------AAL--NVQILLKMHRFD------LAEKE 159 (299)
T ss_pred HHHHHHhhHHhhcCCChHHHHHHHhccchH-HH-------------------HHH--HHHHHHHHHHHH------HHHHH
Confidence 356788999999999999999887774332 11 122 445544544211 11112
Q ss_pred hHHhhhhhHHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHh
Q 005266 424 FVEAQEACESMIEMLRGQY----AHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDL 495 (705)
Q Consensus 424 ~~~a~~~~~a~~~~llG~~----~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALel 495 (705)
+...++..+-.++.-|+.. +...+.+.+|...|+.--.-++.. -..+...|.+++..|++++ +..||+
T Consensus 160 lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T---~~llnG~Av~~l~~~~~eeAe~lL~eaL~- 235 (299)
T KOG3081|consen 160 LKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPT---PLLLNGQAVCHLQLGRYEEAESLLEEALD- 235 (299)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCC---hHHHccHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 2222333232222222222 223445667777777632211111 1234445677777788776 445554
Q ss_pred hccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 005266 496 IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 544 (705)
Q Consensus 496 i~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~ 544 (705)
+.+++ +.++-++-.+....|...++.+.+-.-|+..+
T Consensus 236 -----kd~~d-------petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 236 -----KDAKD-------PETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred -----ccCCC-------HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 22332 45777777777888888777777766666653
No 225
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.91 E-value=38 Score=39.56 Aligned_cols=121 Identities=16% Similarity=0.056 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---hcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH---NHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~---~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
..+.+..+...+.+|++..|.+.|+.-+.... .+.+....+- ..+=..|.+.++..-|.+.+.+|+.+.++...
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V---~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV---GAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH---HHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 34677788888999999999999883331110 1122223322 23345578888888899999999999998654
Q ss_pred hhhHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHH---HHHHHHHHhhc
Q 005266 590 IPTQIW-ALSVLTALYQQLGDRGNEMENDEYRRKKLD---ELQKRLADAYS 636 (705)
Q Consensus 590 ~~~q~~-al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~---~l~~~~~~a~~ 636 (705)
-..... ....+..+....|+-++|...++.-.++.- ++..+...|++
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYA 503 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 432222 223444555556888888877776665332 34444455553
No 226
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.65 E-value=10 Score=41.44 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~ 510 (705)
.+..+..-+|..+...|+|++|+..|..+.. .++.. +..-+|+|..+.-.|.+.+...+.+ ..|++....
T Consensus 55 EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-~~~~~--~el~vnLAcc~FyLg~Y~eA~~~~~------ka~k~pL~~- 124 (557)
T KOG3785|consen 55 EEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-KDDAP--AELGVNLACCKFYLGQYIEAKSIAE------KAPKTPLCI- 124 (557)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-cCCCC--cccchhHHHHHHHHHHHHHHHHHHh------hCCCChHHH-
Confidence 3456777788888888888888888876554 22222 2235666666666666655544443 334433333
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 590 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~ 590 (705)
..+|.++. +.|+ ++-.-.+++.|+-.. .-...|+.+++..-.+.+|.+.|++.+.=-++.
T Consensus 125 ---RLlfhlah---klnd-Ek~~~~fh~~LqD~~----------EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey--- 184 (557)
T KOG3785|consen 125 ---RLLFHLAH---KLND-EKRILTFHSSLQDTL----------EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY--- 184 (557)
T ss_pred ---HHHHHHHH---HhCc-HHHHHHHHHHHhhhH----------HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh---
Confidence 24444432 2222 222333344443321 112245666666677888999998887533322
Q ss_pred hhHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005266 591 PTQIWALSVLTALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 591 ~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
.-..+.++-.|-.+.=++-+.+....++
T Consensus 185 ---~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 185 ---IALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred ---hhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 2222334445555544454544444443
No 227
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.39 E-value=3.9 Score=40.60 Aligned_cols=101 Identities=11% Similarity=-0.023 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 593 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q 593 (705)
.++.-+|..+...|++++|.+.+.++..-+ .+..+..-..++.+ .+.+..|+......++.+|-.+..+.||....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~i-rv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVI-RVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 478888999999999999999999988775 34444545455555 77788899999999999999999998875544
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHH
Q 005266 594 IWALSVLTALYQQLGDRGNEMENDE 618 (705)
Q Consensus 594 ~~al~~L~~l~~~~Gd~~~A~e~~~ 618 (705)
.-....-|-.+...|++..|.+.+-
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHH
Confidence 3333334445555688777776543
No 228
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=34 Score=38.23 Aligned_cols=304 Identities=15% Similarity=0.102 Sum_probs=158.9
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhh--hHHH-HHHHHHHHHHHHHhHHHHHh
Q 005266 342 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQH--SAIW-MAGVYLMLLMQFLENKVAVE 418 (705)
Q Consensus 342 ~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~--~~~w-~~~~~~~l~~~~Le~~~~~~ 418 (705)
..+|+.++++...-..-.+++..+|.-.+.+++. ++.+++ +...... +++. ...+|++|..++. .....+
T Consensus 69 ~~vL~~~v~~~~~~~se~~~~~l~fv~~~~~~~~-----p~~~~s-~~t~~a~~~k~~~~Ei~aY~~lLv~Lf-l~d~K~ 141 (493)
T KOG2581|consen 69 GAVLYKLVSSLLSSGSEAMDRLLRFVPAFDKNIK-----PLDTDS-PNTQSALKRKPLPAEIEAYLYLLVLLF-LIDQKE 141 (493)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHhhcccccccCC-----cccccc-cccccccccCCchHHHHHHHHHHHHHH-HHhhHH
Confidence 5577777777665555455666666666666521 121111 1111111 2222 1255666555421 111111
Q ss_pred hhhh-hhHH------------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCChhHHHHHHHHHHHHHHh
Q 005266 419 LTRS-GFVE------------AQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI---TESKSMQAMCHAYAAVSYFC 482 (705)
Q Consensus 419 L~~~-~~~~------------a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l---~~~~~g~a~a~~nlalv~l~ 482 (705)
++.. .+.. +.+...+.+.+.+-..+-..|++..-...+..-++. --+..|++....++=.-|+.
T Consensus 142 ~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~ 221 (493)
T KOG2581|consen 142 YKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLH 221 (493)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhh
Confidence 1100 0000 112256888888888999999988766655544433 23577888888887777776
Q ss_pred hCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--hcccCHH----HHHHH
Q 005266 483 IGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH--NHMGNLQ----LVSQY 556 (705)
Q Consensus 483 ~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~--~e~gn~~----l~a~a 556 (705)
.+-+|+.+. ++... .+|....+ .+.|.++|++|....-+++|..|.+++.+|++.+- ...|-.+ +...+
T Consensus 222 n~lydqa~~---lvsK~-~~pe~~sn-ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv 296 (493)
T KOG2581|consen 222 NKLYDQADK---LVSKS-VYPEAASN-NEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVV 296 (493)
T ss_pred hHHHHHHHH---Hhhcc-cCcccccc-HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHH
Confidence 555555333 43333 33432222 24799999999999999999999999999999873 1223322 22222
Q ss_pred HHHHHHHH----HHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Q 005266 557 LTILGNLA----LALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLA 632 (705)
Q Consensus 557 L~~LG~i~----~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~ 632 (705)
-..||+|= +++-.++++...|-. |+-|=+.||.----.++...++.....| .|....+....+.+.-.
T Consensus 297 ~ll~geiPers~F~Qp~~~ksL~~Yf~-Lt~AVr~gdlkkF~~~leq~k~~f~~D~-------ty~LivRLR~NVIkTgI 368 (493)
T KOG2581|consen 297 ELLLGEIPERSVFRQPGMRKSLRPYFK-LTQAVRLGDLKKFNETLEQFKDKFQADG-------TYTLIVRLRHNVIKTGI 368 (493)
T ss_pred HHHcCCCcchhhhcCccHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHhhCC-------cchHHHHHHHHHHHHhh
Confidence 23333332 233334444443332 3444466776544444555555554444 45555555555554444
Q ss_pred Hh----hcchhhHHHHhhhccchhccchhhHHHhhhc
Q 005266 633 DA----YSSIHHIELISKVKLEVQQFHELDIKRAMAN 665 (705)
Q Consensus 633 ~a----~~~~~h~~l~~~~~~~~~~~~~~~~~~~~~~ 665 (705)
+- ||.+.=.-+-.+++|.-.+=-|.-.+++...
T Consensus 369 R~ISlsYSRISl~DIA~kL~l~Seed~EyiVakAIRD 405 (493)
T KOG2581|consen 369 RKISLSYSRISLQDIAKKLGLNSEEDAEYIVAKAIRD 405 (493)
T ss_pred hheeeeeeeccHHHHHHHhcCCCchhHHHHHHHHHHh
Confidence 33 3333333334444444433334445555533
No 229
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.03 E-value=1.9 Score=37.11 Aligned_cols=74 Identities=20% Similarity=0.152 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 590 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~ 590 (705)
|--..-.|+-++.+++.++|+...+.+|+... ++..--.+|..|..+|...|+++++.+..-.=+.+|++..|+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKIT----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 34455567778889999999999999998852 345566788999999999999999999999999999998875
No 230
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.97 E-value=2.4 Score=42.92 Aligned_cols=97 Identities=22% Similarity=0.208 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES--KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~--~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
+.-+-.-|-=....|+|++|..-|..|+.+.++ ...+..++.|-|...+..+..+. |+.|++ +.|.|.
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie-l~pty~----- 168 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE-LNPTYE----- 168 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh-cCchhH-----
Confidence 444456788899999999999999999999887 45677788888877777666554 888888 344322
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 542 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~l 542 (705)
+ ++...+.+|-....|++|++-|.+-+.+
T Consensus 169 -----k--Al~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 169 -----K--ALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred -----H--HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3 4555677788889999999999877665
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.83 E-value=28 Score=36.48 Aligned_cols=118 Identities=10% Similarity=-0.002 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 594 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~ 594 (705)
+|=..|...-....+.|+..++++|..+. .+.|.++--+++|-.-|.+. ...+++.|...|.+++.+....+-.....
T Consensus 73 ayEqaamLake~~klsEvvdl~eKAs~lY-~E~GspdtAAmaleKAak~l-env~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKLSEVVDLYEKASELY-VECGSPDTAAMALEKAAKAL-ENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHhCCcchHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 44444555566778888999999998888 57888888888888777654 55788999999999998887766555444
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 005266 595 WALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIH 639 (705)
Q Consensus 595 ~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~~~~ 639 (705)
--+...++++-......+|.-.+... ......+.++.++.
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe-----~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKE-----GVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHh-----hhHHHHHhhcccHH
Confidence 44455566666555555555444332 23334555565553
No 232
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.35 E-value=1.6 Score=44.20 Aligned_cols=116 Identities=17% Similarity=0.154 Sum_probs=78.2
Q ss_pred HhHHhHHHHHHhccCCCC-----ChHHHHHH-------HHHH--------HHHHHHhhc-chHHHHHHHHHHHHHhhcCC
Q 005266 21 IGKAVKCLEAICQSHVSF-----LPIIEVKT-------RLRI--------STLLLKHTH-NVNHAKSHLERSQLLLKAIP 79 (705)
Q Consensus 21 i~~ai~CLea~~~~~~~~-----~p~~EA~~-------rLrl--------a~iL~e~T~-N~~~A~thLeka~~l~~~i~ 79 (705)
...=.+|+|-+-+-.+.. ..|++|.. ||.- --++|.+|- |++.|...|-++ .+-|
T Consensus 61 le~Y~kCielAa~Iq~i~~~e~k~~R~~a~~~s~~~l~~L~~~tk~S~dP~llYy~Wsr~~d~~A~~~fL~~----E~~~ 136 (203)
T PF11207_consen 61 LEKYSKCIELAAQIQHIKQKERKTDRFRALLHSYQELERLQEETKNSQDPYLLYYHWSRFGDQEALRRFLQL----EGTP 136 (203)
T ss_pred HHHHHHHHHHHhcCeeechHhHHHHHHHHHHHHHHHHHHHHHHHccCCCccHHHHHhhccCcHHHHHHHHHH----cCCC
Confidence 334467888877533311 34554432 2322 135677777 788998887764 5555
Q ss_pred chhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHH
Q 005266 80 SCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSS 149 (705)
Q Consensus 80 ~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A 149 (705)
.+++ -++++.||..|.+. +...++.++.+++++...+ +-.++.| | .-||+++..+|++..|
T Consensus 137 ~l~t--~elq~aLAtyY~kr-D~~Kt~~ll~~~L~l~~~~--~~~n~ei---l-~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 137 ELET--AELQYALATYYTKR-DPEKTIQLLLRALELSNPD--DNFNPEI---L-KSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCC--HHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCC--CCCCHHH---H-HHHHHHHHHhcchhhh
Confidence 5554 37788899899865 6788888999999999742 2445677 4 4599999999999865
No 233
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.13 E-value=0.63 Score=30.01 Aligned_cols=31 Identities=23% Similarity=0.154 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 005266 434 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 464 (705)
Q Consensus 434 ~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~ 464 (705)
..+..+|.+++.+|++++|..+|.+++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3567899999999999999999999988754
No 234
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.50 E-value=0.87 Score=34.07 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHcCCChhHHHHHHHHHhhccc
Q 005266 87 RTFSLLSQCYHLVGAIPPQKLILYKALDLTSS 118 (705)
Q Consensus 87 ~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~ 118 (705)
.+++.||+.|...|+++.|...++++++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 56788999999999999999999999999983
No 235
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.10 E-value=5.4 Score=41.62 Aligned_cols=86 Identities=15% Similarity=0.045 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 005266 529 FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 608 (705)
Q Consensus 529 ~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~G 608 (705)
....++.|.+|...++ ..+..++.......||.-|+..|+++.|.+.++++....|+-|=......++..|-+.+...|
T Consensus 154 s~~iI~lL~~A~~~f~-~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFK-KYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3456888999999985 577889999999999999999999999999999999999998888888888888899999999
Q ss_pred CchHHHH
Q 005266 609 DRGNEME 615 (705)
Q Consensus 609 d~~~A~e 615 (705)
|.+....
T Consensus 233 ~~~~~l~ 239 (247)
T PF11817_consen 233 DVEDYLT 239 (247)
T ss_pred CHHHHHH
Confidence 9876554
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.09 E-value=4.5 Score=46.39 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=80.4
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHhhCChhh-HHHHHHhhccccccCCc
Q 005266 428 QEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 428 ~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~-~~g~a~a~~nlalv~l~~gd~d~-~~~ALeli~~~~~~~~~ 505 (705)
..|.-+.-....|.++...|+.++|...|.+|+....+ +....+|.--+++.+...+++++ ..-...+.+.-..
T Consensus 262 ~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W---- 337 (468)
T PF10300_consen 262 RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW---- 337 (468)
T ss_pred hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc----
Confidence 34566888889999999999999999999998853332 55667888888999999999877 3333333332111
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQQDF-------QEARNRLAKGLQIAH 544 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~g~~-------~eA~~~L~eAL~la~ 544 (705)
- +|.+.|..|.++...|+. ++|...+.++-.+..
T Consensus 338 ---S--ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 338 ---S--KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred ---H--HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 1 578899999999999999 666666666666553
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=88.08 E-value=13 Score=34.78 Aligned_cols=110 Identities=17% Similarity=0.160 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHcCCChhHHHHHHHHHhhcccc-ccccccchhhHhHHH-----------HHHHHHhhcCCHHHHHHHH
Q 005266 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSA-SQDVAVKLWSCNFNS-----------QLANAFIIEGDYQSSISAL 153 (705)
Q Consensus 86 ~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~-~~~~~~~~W~~~f~~-----------~lA~~~~~~~d~~~A~~~L 153 (705)
|.....-++.....+....+...+.+++++-..+ -.+.+...|....+- .++.++...|++..|+..+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3333333444555666677777888888887754 222233456544432 3566777789999999999
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhh
Q 005266 154 QSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWE 202 (705)
Q Consensus 154 ~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~ 202 (705)
+.+... ++-.-.....+..++... .++..+.+.+.++...+.
T Consensus 86 ~~~l~~----dP~~E~~~~~lm~~~~~~---g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 86 QRALAL----DPYDEEAYRLLMRALAAQ---GRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHH----STT-HHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHH
T ss_pred HHHHhc----CCCCHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHH
Confidence 999987 777788888899998888 889999999999988874
No 238
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.57 E-value=0.76 Score=32.74 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEAR 533 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~ 533 (705)
+.+|+.+|.++...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 679999999999999999986
No 239
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=85.92 E-value=10 Score=47.59 Aligned_cols=200 Identities=17% Similarity=0.083 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHH-----HHHHHHHHHHHHhhCChhh----HHHHHHhhccccccC
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ-----AMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMK 503 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~-----a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~ 503 (705)
+.-..--|......|.+.+|.. .-+++.+.++..+. +.|+..+|.++-+.||.++ ...|.-+-+++ .
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~---~ 1007 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV---L 1007 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechh---c
Confidence 3344456888889999999999 88888887775544 6788899999999898755 12221111111 1
Q ss_pred CccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 005266 504 DTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG-NLQLVSQYLTILGNLALALHDTVQAREILRSSLT 582 (705)
Q Consensus 504 ~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g-n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~ 582 (705)
|-.... ....|-.++...+..+....|...+.+|+.+-.=-.| +.--++..-..++.+++..++++.|.++.+.|+.
T Consensus 1008 g~ds~~--t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1008 GKDSPN--TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred cCCCHH--HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 111112 3557777788888888888899998888877421111 2334566778999999999999999999999999
Q ss_pred HHHHcCChh--hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH-HHHHHHHHHHhhcch
Q 005266 583 LAKKLYDIP--TQIWALSVLTALYQQLGDRGNEMENDEYRRKK-LDELQKRLADAYSSI 638 (705)
Q Consensus 583 LArk~gD~~--~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~-~~~l~~~~~~a~~~~ 638 (705)
..++..... --+.....+++++...|+...|.++......+ .+.++.+|..-..|-
T Consensus 1086 ~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~ 1144 (1236)
T KOG1839|consen 1086 KNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESS 1144 (1236)
T ss_pred HHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhH
Confidence 888876532 34555678899999999998888876655443 345555555544443
No 240
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.81 E-value=16 Score=37.24 Aligned_cols=109 Identities=19% Similarity=0.170 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
++..+-.-|.-+|..|+|.+|...+++||.++- .......+..|..-|-++..++..+.|.+-+..|+.| + +
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp--~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel----~--p 165 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCP--STSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL----N--P 165 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCc--cccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc----C--c
Confidence 466777788889999999999999999999993 4455888888999999999999999999999999876 2 2
Q ss_pred hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Q 005266 592 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRL 631 (705)
Q Consensus 592 ~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~ 631 (705)
.---++.--+.+|.....++.|.+-| .++.++.-.++
T Consensus 166 ty~kAl~RRAeayek~ek~eealeDy---Kki~E~dPs~~ 202 (271)
T KOG4234|consen 166 TYEKALERRAEAYEKMEKYEEALEDY---KKILESDPSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHhCcchH
Confidence 22334444467888887777766644 44444443333
No 241
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.31 E-value=4 Score=46.23 Aligned_cols=135 Identities=16% Similarity=0.082 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc---CHHH-HHHHHHHHHHHHHHCCChHHHHHHHHHHHH-----HH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG---NLQL-VSQYLTILGNLALALHDTVQAREILRSSLT-----LA 584 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g---n~~l-~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~-----LA 584 (705)
-+++.-....+..|+|..|...|-.. .+. .+-| -+++ .|.+.+.||.||+++|.+.-+...+..|++ |+
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~-~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVS-NIH-KEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhc-ccc-cccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 35666666777789999998888743 443 3344 3344 455569999999999999999999999995 44
Q ss_pred HHcCChh-------hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH---HHHHHHHHhhcchhhHHHHhhhccc
Q 005266 585 KKLYDIP-------TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD---ELQKRLADAYSSIHHIELISKVKLE 650 (705)
Q Consensus 585 rk~gD~~-------~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~---~l~~~~~~a~~~~~h~~l~~~~~~~ 650 (705)
+...... -....+.+.|-.|...|+|-.|.+++..+..... .|-=|.++|.=+-+...+++..+..
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s 394 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSS 394 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCC
Confidence 3211111 1234456789999999999999999988877665 4666788898888888888876543
No 242
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.89 E-value=1.2 Score=28.55 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQI 542 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~l 542 (705)
.+++.+|.+++..|++++|...+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 36889999999999999999999999876
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.67 E-value=33 Score=31.72 Aligned_cols=174 Identities=23% Similarity=0.194 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhcccccc-CCccchhhh
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQM-KDTINGVRE 511 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~-~~~~~g~~~ 511 (705)
.......+......+.+..+...+..++.. ...........+.+..+...+++.. +++.+...... +.+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------ 128 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEE---ALELLEKALALDPDP------ 128 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHH---HHHHHHHHHcCCCCc------
Confidence 456678899999999999999999988763 1122223334445555554444333 33333322111 111
Q ss_pred HHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh
Q 005266 512 EASLHFAYGL-LLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 590 (705)
Q Consensus 512 qA~al~~lG~-~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~ 590 (705)
.......+. ++...|++++|...+.+++... . . .......+...+..+...++..+|...+..++......
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 200 (291)
T COG0457 129 -DLAEALLALGALYELGDYEEALELYEKALELD-P-E--LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD--- 200 (291)
T ss_pred -chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C-C--ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc---
Confidence 112333333 7889999999999999996631 1 1 12334466666677888999999999999999887664
Q ss_pred hhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 591 PTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 591 ~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
...+...++..+...|+.++|...+.........
T Consensus 201 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 201 --DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred --chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 3455567788999999888888888877776654
No 244
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.46 E-value=4.3 Score=44.01 Aligned_cols=96 Identities=22% Similarity=0.196 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchh
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKI-TESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l-~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~ 509 (705)
-+---|--|+.-.+|..|...|..+++. ++++..-+.+..|=|-.....|++.+ |++|+. ..|.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~------~~P~h---- 152 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK------LKPTH---- 152 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh------cCcch----
Confidence 3445699999999999999999999976 66788888888887777777788877 777776 23332
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
+-+++.-+.+++...++.+|.+++.+++.+-
T Consensus 153 ---~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 153 ---LKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ---hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3478888899999999999999999887764
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=83.82 E-value=15 Score=35.22 Aligned_cols=89 Identities=12% Similarity=0.039 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
+..+|.-|...+..|+|.+|...|+. |.- + .--.....++..-||.+|+..|++++|...+++=+.|-=.+.++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~-L~~--r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-- 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEA-LDT--R-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-- 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH-HHh--c-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc--
Confidence 56899999999999999999999994 443 2 22336777899999999999999999999999877775555554
Q ss_pred HHHHHHHHHHHHHHcC
Q 005266 593 QIWALSVLTALYQQLG 608 (705)
Q Consensus 593 q~~al~~L~~l~~~~G 608 (705)
-+++-..|-.+-...
T Consensus 84 -dYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 84 -DYAYYMRGLSYYEQD 98 (142)
T ss_pred -cHHHHHHHHHHHHHh
Confidence 566655555554443
No 246
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.56 E-value=4.3 Score=42.20 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHH
Q 005266 61 VNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAF 140 (705)
Q Consensus 61 ~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~ 140 (705)
+..|.++|.||..++|..+.++ .-=|.||++++++..+-.=-++|++++++ ..+ =.|-++...
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~-------tnralchlk~~~~~~v~~dcrralql~~N------~vk----~h~flg~~~ 88 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYY-------TNRALCHLKLKHWEPVEEDCRRALQLDPN------LVK----AHYFLGQWL 88 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhh-------hhHHHHHHHhhhhhhhhhhHHHHHhcChH------HHH----HHHHHHHHH
Confidence 7889999999999999887443 23378999999998888888899999975 222 123367777
Q ss_pred hhcCCHHHHHHHHHHHHHHHhhcCCc
Q 005266 141 IIEGDYQSSISALQSGYVCATEISYP 166 (705)
Q Consensus 141 ~~~~d~~~A~~~L~~~~~~A~~~~~~ 166 (705)
.....|..|+..|+...++.++...+
T Consensus 89 l~s~~~~eaI~~Lqra~sl~r~~~~~ 114 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLLREQPFT 114 (284)
T ss_pred HhhccccHHHHHHHHHHHHHhcCCCC
Confidence 88899999999999999988776654
No 247
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.12 E-value=1.5 Score=29.11 Aligned_cols=25 Identities=12% Similarity=-0.081 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYV 457 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~ 457 (705)
|.++..+|.++..+|++++|+.+++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3567889999999999999998875
No 248
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.90 E-value=2.3 Score=31.36 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcC
Q 005266 554 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 588 (705)
Q Consensus 554 a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~g 588 (705)
|.++..||++.+..+++.+|..-|++|+.+-+++-
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 35788999999999999999999999999988764
No 249
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.24 E-value=2.6 Score=28.62 Aligned_cols=31 Identities=16% Similarity=0.029 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKITES 465 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~ 465 (705)
+.+.+|.++...|++++|...|++.++..++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4678899999999999999999998887664
No 250
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.12 E-value=3.4 Score=44.84 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=79.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 005266 520 GLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSV 599 (705)
Q Consensus 520 G~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~ 599 (705)
|.-+|.+|.|+||..++..++.+. --|+- .+..-+.+|+++..+..|+.-+..|+.| .+.++.+++-.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~---P~NpV----~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d~~Y~KAYSRR- 171 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY---PHNPV----YHINRALAYLKQKSFAQAEEDCEAAIAL----DKLYVKAYSRR- 171 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC---CCCcc----chhhHHHHHHHHHHHHHHHHhHHHHHHh----hHHHHHHHHHH-
Confidence 555779999999999999998774 22432 4456677899999999999988888877 55665555543
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHH---HHHHHHHHHhhcchhhHHHHhhhc
Q 005266 600 LTALYQQLGDRGNEMENDEYRRKKL---DELQKRLADAYSSIHHIELISKVK 648 (705)
Q Consensus 600 L~~l~~~~Gd~~~A~e~~~~~~~~~---~~l~~~~~~a~~~~~h~~l~~~~~ 648 (705)
+.....+|...+|-+-++..++.- .+|. ....+..|+.-..|+.+.-
T Consensus 172 -~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELk-K~~a~i~Sl~E~~I~~KsT 221 (536)
T KOG4648|consen 172 -MQARESLGNNMEAKKDCETVLALEPKNIELK-KSLARINSLRERKIATKST 221 (536)
T ss_pred -HHHHHHHhhHHHHHHhHHHHHhhCcccHHHH-HHHHHhcchHhhhHHhhcC
Confidence 345566777777777776665542 2332 2344556677777777654
No 251
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=81.17 E-value=1.4e+02 Score=36.47 Aligned_cols=180 Identities=13% Similarity=0.048 Sum_probs=98.9
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhcccc
Q 005266 427 AQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAA------KITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVY 500 (705)
Q Consensus 427 a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al------~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~ 500 (705)
|.+.++-.+-|.+|..|-..|++-+|...|.+|- ++..++..... +.|+++.- |..| .-.|-..+++.+
T Consensus 961 A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~-L~nlal~s---~~~d-~v~aArYyEe~g 1035 (1416)
T KOG3617|consen 961 AEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDR-LANLALMS---GGSD-LVSAARYYEELG 1035 (1416)
T ss_pred HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHhhc---Cchh-HHHHHHHHHHcc
Confidence 3444666677899999999999999999998743 33333222211 22222211 1111 111111122211
Q ss_pred ccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHH-----HHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHH-
Q 005266 501 QMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLA-----KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAR- 574 (705)
Q Consensus 501 ~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~-----eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~- 574 (705)
+... +|..+ |.+.|-+..|++.-= .||++- ..+.++.--...+.+-++.|....++++|.
T Consensus 1036 ---~~~~----~AVmL------YHkAGm~~kALelAF~tqQf~aL~lI-a~DLd~~sDp~ll~RcadFF~~~~qyekAV~ 1101 (1416)
T KOG3617|consen 1036 ---GYAH----KAVML------YHKAGMIGKALELAFRTQQFSALDLI-AKDLDAGSDPKLLRRCADFFENNQQYEKAVN 1101 (1416)
T ss_pred ---hhhh----HHHHH------HHhhcchHHHHHHHHhhcccHHHHHH-HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHH
Confidence 0000 12222 223344444443221 134443 223333333445667778888877888765
Q ss_pred -----HHHHHHHHHHHHcCChh-------------------hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 575 -----EILRSSLTLAKKLYDIP-------------------TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 575 -----~~~~~Al~LArk~gD~~-------------------~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
+.|..|+++++.-+-+. .....+..++++....|++..|..-|..+.++..
T Consensus 1102 lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~ 1176 (1416)
T KOG3617|consen 1102 LLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLS 1176 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHH
Confidence 45677777777644322 4466788899999999998888877777766654
No 252
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.94 E-value=51 Score=32.97 Aligned_cols=99 Identities=18% Similarity=0.125 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHH
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-SMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA 513 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~-~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA 513 (705)
+.+-.|.+....|+.++|...|..+.+-++.+ .++..+.+..+.+....|.|+..+. .++|+ ..+++. . +.
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~s---rvepL-a~d~n~--m--R~ 167 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSS---RVEPL-AGDGNP--M--RH 167 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHH---Hhhhc-cCCCCh--h--HH
Confidence 34456788889999999999999977766654 4568899999999988888877333 23343 112222 2 46
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQ 541 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~ 541 (705)
.+-=.+|++....|++..|+..|.+-..
T Consensus 168 sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 168 SAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6778899999999999999999986533
No 253
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=80.25 E-value=53 Score=34.50 Aligned_cols=118 Identities=15% Similarity=0.081 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhC--C-hhh-HHHHHHhhcccccc
Q 005266 431 CESMIEMLRGQYAHS----VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG--D-AES-SSQAIDLIGPVYQM 502 (705)
Q Consensus 431 ~~a~~~~llG~~~~~----~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~g--d-~d~-~~~ALeli~~~~~~ 502 (705)
+.+.+.+.+|.++.. ..+..+|...|.+|...-.... ..+..+++..|.... . .+. ...|+..+...+..
T Consensus 107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 556667778888877 4589999999999987632222 566778888887631 1 111 33555555544221
Q ss_pred CCccchhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCC
Q 005266 503 KDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH 568 (705)
Q Consensus 503 ~~~~~g~~~qA~al~~lG~~~~~----~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg 568 (705)
- . ..+.+.+|..+.. ..++.+|..++.+| .+.|| ..+...+| ++...|
T Consensus 185 ~-----~---~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~A-----a~~g~----~~a~~~~~-~~~~~g 236 (292)
T COG0790 185 G-----N---PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKA-----AEQGD----GAACYNLG-LMYLNG 236 (292)
T ss_pred c-----C---HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH-----HHCCC----HHHHHHHH-HHHhcC
Confidence 1 1 3467777766644 34789999999988 44566 45777888 666666
No 254
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.83 E-value=1e+02 Score=34.05 Aligned_cols=157 Identities=16% Similarity=0.016 Sum_probs=90.8
Q ss_pred HHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Q 005266 13 DYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLL 92 (705)
Q Consensus 13 e~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lL 92 (705)
|.|-+..+..-||.-||-... +-...|--+.|=+|--- .|.+|+++|...++-+..-..... +.---|
T Consensus 30 edfls~rDytGAislLefk~~----~~~EEE~~~~lWia~C~-fhLgdY~~Al~~Y~~~~~~~~~~~-------el~vnL 97 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLN----LDREEEDSLQLWIAHCY-FHLGDYEEALNVYTFLMNKDDAPA-------ELGVNL 97 (557)
T ss_pred HHHHhcccchhHHHHHHHhhc----cchhhhHHHHHHHHHHH-HhhccHHHHHHHHHHHhccCCCCc-------ccchhH
Confidence 456666677777777665553 34466667777777654 478999999998886544221122 233346
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhccc------ccccc-ccchhh-H--------hHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005266 93 SQCYHLVGAIPPQKLILYKALDLTSS------ASQDV-AVKLWS-C--------NFNSQLANAFIIEGDYQSSISALQSG 156 (705)
Q Consensus 93 A~~y~~~~~~~~ak~~l~kai~~~~~------~~~~~-~~~~W~-~--------~f~~~lA~~~~~~~d~~~A~~~L~~~ 156 (705)
|=|++-.|.+..|+.+..||-+.--. -+-.+ ....|. + .=++-||++|-..-.|+.|+++|...
T Consensus 98 Acc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 98 ACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888777765332110 00000 011220 0 00112455555556778888887776
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcccCChh
Q 005266 157 YVCATEISYPDLQMFFATAILHVHLMQWDDEN 188 (705)
Q Consensus 157 ~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~ 188 (705)
..- +++++..-.-++.|+..| +-+|
T Consensus 178 L~d----n~ey~alNVy~ALCyyKl---DYyd 202 (557)
T KOG3785|consen 178 LQD----NPEYIALNVYMALCYYKL---DYYD 202 (557)
T ss_pred Hhc----ChhhhhhHHHHHHHHHhc---chhh
Confidence 643 555666566677777666 5444
No 255
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.70 E-value=2.1 Score=28.46 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAK 538 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~e 538 (705)
.+.+.+|.++..+|++++|.+.+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3678899999999999999998863
No 256
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.68 E-value=2.9 Score=28.37 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQI 542 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~l 542 (705)
++|.+|.++...|++++|++.+++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6889999999999999999999988765
No 257
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.22 E-value=50 Score=35.41 Aligned_cols=195 Identities=16% Similarity=0.088 Sum_probs=119.1
Q ss_pred HHHcCCHHHHHHHHHHHHHh----cCC-hhHHHHHHHHHHHHHHhhCChhh-------HHHHHHh---------hccc-c
Q 005266 443 AHSVGCYSEAAFHYVEAAKI----TES-KSMQAMCHAYAAVSYFCIGDAES-------SSQAIDL---------IGPV-Y 500 (705)
Q Consensus 443 ~~~~g~~~eA~~~f~~Al~l----~~~-~~g~a~a~~nlalv~l~~gd~d~-------~~~ALel---------i~~~-~ 500 (705)
+...+++++|+..|.+-+.- .+. ...+..+.+++.-+|...|++.. ...+.+- ++.+ .
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 34456677777777765533 111 33455667777778877777654 2222221 1111 1
Q ss_pred ccCCccchh---------------hh-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 005266 501 QMKDTINGV---------------RE-----EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 560 (705)
Q Consensus 501 ~~~~~~~g~---------------~~-----qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~L 560 (705)
.||+..-.. ++ +-..-.-+..++..+|+|.+|+....--+.-.++ ..+.-.....+..=
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk-~DDK~~Li~vhllE 171 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK-YDDKINLITVHLLE 171 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-hcCccceeehhhhh
Confidence 223221111 00 1111223456778899999999988877766643 55555555577777
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH-HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 005266 561 GNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLT-ALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIH 639 (705)
Q Consensus 561 G~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~-~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~~~~ 639 (705)
+.+||...+..+|..++.+|.++|....=++...--+..+. -+++.--|++-|..+|-.+.+-+-.+..+ ..|.+|.-
T Consensus 172 SKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d-~kAc~sLk 250 (421)
T COG5159 172 SKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMD-VKACVSLK 250 (421)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccch-HHHHHHHH
Confidence 89999999999999999999999999887764443344443 45666677788887776665555544433 45554443
No 258
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.91 E-value=15 Score=38.53 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------hh------HHHHHHHHHHHHHHhhCChhh-HHHHHHhhcc
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKITES---------KS------MQAMCHAYAAVSYFCIGDAES-SSQAIDLIGP 498 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~---------~~------g~a~a~~nlalv~l~~gd~d~-~~~ALeli~~ 498 (705)
++.-.|.-....|+|.||...|..|+...++ +. ...-.++|.+..++..|++-+ .+.+-+.++
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~- 258 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR- 258 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh-
Confidence 3445788999999999999999999865322 22 123457888888888888644 333333322
Q ss_pred ccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 005266 499 VYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 542 (705)
Q Consensus 499 ~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~l 542 (705)
..|++ --+||..|-++..-=+.+||+.-|..+|.+
T Consensus 259 --~~~~n-------vKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 259 --HHPGN-------VKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred --cCCch-------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 22442 237999999998888999999999999887
No 259
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=78.61 E-value=21 Score=33.53 Aligned_cols=71 Identities=17% Similarity=0.256 Sum_probs=57.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh---------hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Q 005266 557 LTILGNLALALHDTVQAREILRSSLTLAKKLYDIP---------TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDEL 627 (705)
Q Consensus 557 L~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~---------~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l 627 (705)
++++|+..+..+++-.|.-+|..|+.++.++.... .-+.+-.+|+..++..||++=+..+.+.+.+.--.|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999984211 233444789999999999999998888876665544
No 260
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.34 E-value=6.7 Score=40.31 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~ 510 (705)
..|.+|.-.|.++-+.|-.+-|..-|.+|+.+.++ .+.+...+|+-+...|++|..-.+.+.+=++ .|+.
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~---m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y----- 132 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTY----- 132 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC---cHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcc-----
Confidence 56889999999999999999999999999999665 3345667788888889877633333322111 1221
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLA 537 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~ 537 (705)
-.+..+.|++...-|||+=|.+-+.
T Consensus 133 --~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 133 --NYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred --hHHHhccceeeeecCchHhhHHHHH
Confidence 1345555655556666666665554
No 261
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.14 E-value=14 Score=36.92 Aligned_cols=62 Identities=21% Similarity=0.235 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc
Q 005266 512 EASLHFAYGLLLMRQQ----DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 587 (705)
Q Consensus 512 qA~al~~lG~~~~~~g----~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~ 587 (705)
...+++.+|.++..++ +..+|..++.+|..-+.+ ..+-+..-++|+.+|++++|.
T Consensus 68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fqk---------------------Av~~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQK---------------------AVDEDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---------------------HHHH-TT-HHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH---------------------HHhcCCCcHHHHHHHHHHHhh
Confidence 3567888888887755 455667777766554421 012233457889999999888
Q ss_pred CChhhHH
Q 005266 588 YDIPTQI 594 (705)
Q Consensus 588 gD~~~q~ 594 (705)
+..+.++
T Consensus 127 p~lh~e~ 133 (186)
T PF06552_consen 127 PELHMEI 133 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 262
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=78.02 E-value=31 Score=43.68 Aligned_cols=156 Identities=16% Similarity=0.106 Sum_probs=105.8
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHHHHhhCChhh----HHHHHH
Q 005266 424 FVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-----KSMQAMCHAYAAVSYFCIGDAES----SSQAID 494 (705)
Q Consensus 424 ~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~-----~~g~a~a~~nlalv~l~~gd~d~----~~~ALe 494 (705)
...+.++..+.-+..++..+...|++++|...-.+|.-+.+. .........|+++.......... ..+++.
T Consensus 964 v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 964 VMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred hhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 334556666777889999999999999999998887765432 33345567777766665443222 677777
Q ss_pred hhcccc--ccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHH-HHHHHHHHHHHHHHCCChH
Q 005266 495 LIGPVY--QMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL-VSQYLTILGNLALALHDTV 571 (705)
Q Consensus 495 li~~~~--~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l-~a~aL~~LG~i~~~lg~~~ 571 (705)
+..-.+ ..|. -|....+++..++-.++++.|.++++.|++....-.|...+ ++..+..++..+-..++.+
T Consensus 1044 l~~Ls~ge~hP~-------~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr 1116 (1236)
T KOG1839|consen 1044 LKLLSSGEDHPP-------TALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFR 1116 (1236)
T ss_pred hhccccCCCCCc-------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHH
Confidence 644321 2232 25677888888888899999999999999988665664443 3455566666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 005266 572 QAREILRSSLTLAKK 586 (705)
Q Consensus 572 qA~~~~~~Al~LArk 586 (705)
-|..+.+.+..+.++
T Consensus 1117 ~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1117 NALEHEKVTYGIYKE 1131 (1236)
T ss_pred HHHHHHhhHHHHHHH
Confidence 666666666555544
No 263
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=77.68 E-value=30 Score=37.87 Aligned_cols=118 Identities=18% Similarity=0.114 Sum_probs=90.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 005266 519 YGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALS 598 (705)
Q Consensus 519 lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~ 598 (705)
+..+|+..++|.+|+.....-++--+ -..+.-+.-.....=+.+||.+.+..+|...+..|.+.|..+.=+|...-++.
T Consensus 134 li~Ly~d~~~YteAlaL~~~L~rElK-KlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 134 LIRLYNDTKRYTEALALINDLLRELK-KLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH-hcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 45567889999999999888877774 47777787778888899999999999999999999999999987775554544
Q ss_pred HH-HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 005266 599 VL-TALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSI 638 (705)
Q Consensus 599 ~L-~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~~~ 638 (705)
.. |-+|.+-.|+.-|..+|=.+-+-.+++..+ ..|.+|.
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~-v~A~~sL 252 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD-VKALTSL 252 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCc-HHHHHHH
Confidence 44 446666677788887777766666666655 3444443
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.56 E-value=48 Score=36.34 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=45.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 005266 520 GLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSV 599 (705)
Q Consensus 520 G~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~ 599 (705)
+..+...|-|++|...-++|+++ |+ --|-+-...++|+--.|++.++.+ --.+..|.+.+.|.+..
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqi-N~------~D~Wa~Ha~aHVlem~~r~Keg~e-------FM~~ted~Wr~s~mlas 247 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQI-NR------FDCWASHAKAHVLEMNGRHKEGKE-------FMYKTEDDWRQSWMLAS 247 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccC-CC------cchHHHHHHHHHHHhcchhhhHHH-------HHHhcccchhhhhHHHh
Confidence 33445566677777777777666 22 122345556666666665554433 33344455555554422
Q ss_pred -----HHHHHHHcCCchHHHHHHHHH
Q 005266 600 -----LTALYQQLGDRGNEMENDEYR 620 (705)
Q Consensus 600 -----L~~l~~~~Gd~~~A~e~~~~~ 620 (705)
-+-.|-..++++.|.+.|...
T Consensus 248 HNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 248 HNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred hhhHHHHHhhhcccchhHHHHHHHHH
Confidence 122444445566666655443
No 265
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.47 E-value=85 Score=34.22 Aligned_cols=101 Identities=21% Similarity=0.187 Sum_probs=64.3
Q ss_pred hhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHH-hhcCC--chHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhh
Q 005266 127 LWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA-TEISY--PDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWES 203 (705)
Q Consensus 127 ~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A-~~~~~--~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~ 203 (705)
...+..+++||++|-.+++|..|.+.|..+=.-. .+.++ ..+.....++.+|+-. ++..+++.-+||+.=++.
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~---~d~veae~~inRaSil~a- 175 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLED---DDKVEAEAYINRASILQA- 175 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHhhh-
Confidence 4567788999999999999999999887543211 01111 2455556667777655 667778888888865542
Q ss_pred cCcccccccccchhhhhHHHHHHH---Hhhhh----hhhhhhhhhhh
Q 005266 204 IDPNRRGQCLGLLFYNELLHIFYR---LRICD----YKNAAHHVDNL 243 (705)
Q Consensus 204 ~~~~~~~~~~G~~~~~E~l~v~~~---L~vc~----~~~~~~~v~~l 243 (705)
+ -.+|.|++-|- =||-+ |++|+++.-++
T Consensus 176 ------~------~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 176 ------E------SSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred ------c------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 13488888872 22322 55665554433
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=76.09 E-value=51 Score=35.27 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=75.2
Q ss_pred hHHHHHHHhHHHhhhcccHhHHhHHHHHHhccCCCCChHH-HHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-HhhcC--
Q 005266 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPII-EVKTRLRISTLLLKHTHNVNHAKSHLERSQL-LLKAI-- 78 (705)
Q Consensus 3 ~~~~~L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~-EA~~rLrla~iL~e~T~N~~~A~thLeka~~-l~~~i-- 78 (705)
+++...+.+|...|..+.+..|..+|.-+.+.+. .+.. -..+.+.+|++|+.- ++-.+|...|+.... .+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~--~~~~~~~~v~~e~akllw~~-g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNP--SSESLLPRVFLEYAKLLWAQ-GEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC--cccCCCcchHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhhhccc
Confidence 6778899999999999999999999999997553 1111 334567778888776 566888888776554 11111
Q ss_pred -----------------------Cc-hhhhhhhHHHHHHHHHHHc------CCChhHHHHHHHHHhhccc
Q 005266 79 -----------------------PS-CFELKCRTFSLLSQCYHLV------GAIPPQKLILYKALDLTSS 118 (705)
Q Consensus 79 -----------------------~~-~~dlK~~~~~lLA~~y~~~------~~~~~ak~~l~kai~~~~~ 118 (705)
.. -.+.+-.++.++++..... +....+....+++++..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 00 1144555555666655555 4445566677888887764
No 267
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.50 E-value=8.5 Score=30.51 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 552 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l 552 (705)
++|.+++.+.+.|+|++|++++...|++- -+|+|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e---P~N~Qa 37 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE---PDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT---TS-HHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC---CCcHHH
Confidence 67888999999999999999999999982 567554
No 268
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=75.26 E-value=40 Score=36.95 Aligned_cols=171 Identities=17% Similarity=0.212 Sum_probs=107.6
Q ss_pred HhHHHhhhcc-----cHhHHhHHHHHHhccCCCCC-hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchh-
Q 005266 10 GLADYHENKG-----EIGKAVKCLEAICQSHVSFL-PIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF- 82 (705)
Q Consensus 10 ~lAe~~~~~~-----~i~~ai~CLea~~~~~~~~~-p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~- 82 (705)
.|-|.|...+ .|.-|-.|.|=+-+.+++|. -..||| +.+ |+..|..|.+|...... +++....++
T Consensus 92 ~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Lear----li~-Ly~d~~~YteAlaL~~~---L~rElKKlDD 163 (411)
T KOG1463|consen 92 SLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEAR----LIR-LYNDTKRYTEALALIND---LLRELKKLDD 163 (411)
T ss_pred HHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHH-HHHhhHHHHHHHHHHHH---HHHHHHhccc
Confidence 3445555542 78889999998887666554 344443 344 45567788888777553 223333333
Q ss_pred -hhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 005266 83 -ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCAT 161 (705)
Q Consensus 83 -dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~ 161 (705)
.+-.+.+-+=+..|+..++.+.+|..|.-|-..+.. -|..+.-.-..-+|-+=+|+.++||..|.+.+-+...=-.
T Consensus 164 K~lLvev~llESK~y~~l~Nl~KakasLTsART~Ana---iYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 164 KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANA---IYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcc---cccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Confidence 345566777799999999999999888887776653 4545565666777777789999999999998888665333
Q ss_pred hcCCchHHHHHHHHHHHH-HhcccCChhHHHHH
Q 005266 162 EISYPDLQMFFATAILHV-HLMQWDDENSVLRS 193 (705)
Q Consensus 162 ~~~~~~~~~~~~La~~~~-~L~~~~~~~~v~~a 193 (705)
..+++ +...++|=-.++ ..|- +.+++|...
T Consensus 241 s~~~~-v~A~~sLKYMlLcKIMl-n~~ddv~~l 271 (411)
T KOG1463|consen 241 SLDDD-VKALTSLKYMLLCKIML-NLPDDVAAL 271 (411)
T ss_pred ccCCc-HHHHHHHHHHHHHHHHh-cCHHHHHHH
Confidence 33432 333333322211 2221 555665444
No 269
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.17 E-value=1.9e+02 Score=34.51 Aligned_cols=94 Identities=12% Similarity=0.039 Sum_probs=56.2
Q ss_pred HHHHHHHHHHh-----cCChhHHHHHHHHHHHHHH-hhCChhh-----------HHHHHHhhccccccCCccchhhhHHH
Q 005266 452 AAFHYVEAAKI-----TESKSMQAMCHAYAAVSYF-CIGDAES-----------SSQAIDLIGPVYQMKDTINGVREEAS 514 (705)
Q Consensus 452 A~~~f~~Al~l-----~~~~~g~a~a~~nlalv~l-~~gd~d~-----------~~~ALeli~~~~~~~~~~~g~~~qA~ 514 (705)
+.....+++-. .++....+.|..++-.+-. ..|+.+. ++-++..+...+..|....-. -|.
T Consensus 733 ~l~AL~e~Ll~~~~~aspe~~~~~lc~~~LI~l~~V~~G~~~vEl~iL~~v~~~~~i~~s~~~~t~~YP~~E~~W--La~ 810 (872)
T KOG4814|consen 733 VLIALLETLLKRNMGASPEVKERELCSWLLILLENVINGNHEVELRILDRVLKILNINQSSLQDTDGYPQTELEW--LAT 810 (872)
T ss_pred HHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHH--HHH
Confidence 44444444422 2334566777777655442 2466433 233333344332333321111 366
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM 547 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~ 547 (705)
.-++.|..++..|++..|+.++.-+|+.++.-.
T Consensus 811 ~~WN~gvL~~~~~~~~~A~KWc~~~L~fan~vT 843 (872)
T KOG4814|consen 811 YCWNIGVLYIIKDNKSNAIKWCKHSLGFANMVT 843 (872)
T ss_pred HHhhhheeeeeccchhhHHHHHHHHHHHHhhhc
Confidence 778889999999999999999999999996433
No 270
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.68 E-value=15 Score=39.52 Aligned_cols=106 Identities=11% Similarity=0.082 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh-HHHHHHhhcccc-ccC-----
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVY-QMK----- 503 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~-~~~ALeli~~~~-~~~----- 503 (705)
+++......|-+....|++++|..-|+.|+...+-.++ ...|+|+.+-..|++++ +...-++++.-. ..|
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl---lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIG 218 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL---LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIG 218 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCch---hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCcc
Confidence 56777788999999999999999999999998776553 35688888888888776 222222222110 111
Q ss_pred -----------CccchhhhH--HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005266 504 -----------DTINGVREE--ASLHFAYGLLLMRQQDFQEARNRLAKG 539 (705)
Q Consensus 504 -----------~~~~g~~~q--A~al~~lG~~~~~~g~~~eA~~~L~eA 539 (705)
++.....+. ..+++..+-+.++.|+++.|++.|..-
T Consensus 219 m~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 219 MTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred ceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 111111111 346777778889999999999988743
No 271
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=74.34 E-value=12 Score=34.95 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh------------hHHHHHHHHHHHHHHhhCChhh
Q 005266 436 EMLRGQYAHSVGCYSEAAFHYVEAAKITESK------------SMQAMCHAYAAVSYFCIGDAES 488 (705)
Q Consensus 436 ~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~------------~g~a~a~~nlalv~l~~gd~d~ 488 (705)
|+++|..++..+++=.|.-||++|+.+..+- ........|+|--|+..||.+.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~y 68 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDY 68 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHH
Confidence 6899999999999999999999999885431 2345668899999999999766
No 272
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.37 E-value=1.2e+02 Score=31.53 Aligned_cols=63 Identities=19% Similarity=0.110 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREI 576 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~ 576 (705)
....+-+|.-++..|++++|+.+|+.+.... +..|=..+...++..+-..+...|+.+.....
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~y-r~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSY-RREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4466778999999999999999999999998 56888899999999999999999988755443
No 273
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.31 E-value=18 Score=31.19 Aligned_cols=74 Identities=23% Similarity=0.303 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 005266 530 QEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGD 609 (705)
Q Consensus 530 ~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd 609 (705)
+.|++..+++|++++ ..+.++|....++++. ++.+......++..|..+|...|+
T Consensus 4 ~~ak~~ie~GlkLY~----------------------~~~~~~Al~~W~~aL~---k~~~~~~rf~~lG~l~qA~~e~Gk 58 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYH----------------------QNETQQALQKWRKALE---KITDREDRFRVLGYLIQAHMEWGK 58 (80)
T ss_pred HHHHHHHHHHHHHhc----------------------cchHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHH
Confidence 467777777777763 2466788888998884 555566667788889999999999
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 005266 610 RGNEMENDEYRRKKLDELQ 628 (705)
Q Consensus 610 ~~~A~e~~~~~~~~~~~l~ 628 (705)
+....++...-..+++++.
T Consensus 59 yr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 59 YREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 9999998888888888764
No 274
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=73.03 E-value=93 Score=40.13 Aligned_cols=168 Identities=14% Similarity=0.089 Sum_probs=110.7
Q ss_pred cHhHHhHHHHHHhc-cCCCCChHHHHHHHHHHHHHHHHhh----------------c---chHHHHHHHHHHHHHhhcCC
Q 005266 20 EIGKAVKCLEAICQ-SHVSFLPIIEVKTRLRISTLLLKHT----------------H---NVNHAKSHLERSQLLLKAIP 79 (705)
Q Consensus 20 ~i~~ai~CLea~~~-~~~~~~p~~EA~~rLrla~iL~e~T----------------~---N~~~A~thLeka~~l~~~i~ 79 (705)
....+|.++.-... +....||.+|+.+.||++++|..-- . .-.++-..+.|++.+.-.
T Consensus 360 ~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~-- 437 (1185)
T PF08626_consen 360 LYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK-- 437 (1185)
T ss_pred HHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh--
Confidence 34577788877752 2223799999999999999998765 1 466777788888876432
Q ss_pred ch-hhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHH---HHHhhc------------
Q 005266 80 SC-FELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLA---NAFIIE------------ 143 (705)
Q Consensus 80 ~~-~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA---~~~~~~------------ 143 (705)
.+ ..-|+..+..||.+|...|-.++.-.+++.++-..... ...|+-.|+..+. ..|...
T Consensus 438 ~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~~-----l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~ 512 (1185)
T PF08626_consen 438 DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVPG-----LIHWHQSYRSLLEELCKGYGISLDPESSSEDSSK 512 (1185)
T ss_pred hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhccc-----cCCcchHHHHHHHHHhccCcccCCcccccccccc
Confidence 22 37788999999999999999988888999988766421 1455554444433 344431
Q ss_pred ---C-CHHHHHHHHHHHHHHHhhcCCchHHH--HHHHHHHHHHhcccCChhHHHHHH
Q 005266 144 ---G-DYQSSISALQSGYVCATEISYPDLQM--FFATAILHVHLMQWDDENSVLRSI 194 (705)
Q Consensus 144 ---~-d~~~A~~~L~~~~~~A~~~~~~~~~~--~~~La~~~~~L~~~~~~~~v~~al 194 (705)
+ ...-=+.+|+..+..|+..+|....+ ...|...+.+.+..++...+...+
T Consensus 513 ~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL~~~~~~Ls~~EQ~~L~~~l 569 (1185)
T PF08626_consen 513 GSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLLRTYSPLLSPDEQIRLANNL 569 (1185)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHH
Confidence 1 12334678999999999989875444 444444455555433333333333
No 275
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.02 E-value=38 Score=36.38 Aligned_cols=101 Identities=24% Similarity=0.237 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH---------------H
Q 005266 516 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS---------------S 580 (705)
Q Consensus 516 l~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~---------------A 580 (705)
-+.-|.-....|++.+|...+..++.... +. +.+...|+..|...|+.+.|...+.. -
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~-~~------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~ 209 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAP-EN------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQ 209 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCc-cc------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34456667889999999999999999973 22 35778899999999999888777654 2
Q ss_pred HHHHHHcCChh-------------hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 581 LTLAKKLYDIP-------------TQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 581 l~LArk~gD~~-------------~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
+++.....+.+ .-..+-..|++.+...|+++.|.+++-..++.
T Consensus 210 i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 210 IELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444333332 11223367889999999999999987776665
No 276
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=72.96 E-value=6.4 Score=29.03 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 005266 434 MIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 463 (705)
Q Consensus 434 ~~~~llG~~~~~~g~~~eA~~~f~~Al~l~ 463 (705)
.++..||.+.+-.++|++|..-|.+|+.+-
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999873
No 277
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.07 E-value=1.4e+02 Score=34.61 Aligned_cols=78 Identities=18% Similarity=0.108 Sum_probs=68.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH-HHHHHcCChhhHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHH
Q 005266 547 MGNLQLVSQYLTILGNLALALHDTVQAREILRSSL-TLAKKLYDIPTQIWALSVLTALYQQLGD-RGNEMENDEYRRKKL 624 (705)
Q Consensus 547 ~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al-~LArk~gD~~~q~~al~~L~~l~~~~Gd-~~~A~e~~~~~~~~~ 624 (705)
..+..-++.-+.++|-++.++|+..+|..++.-++ ...++..|.+..-.++..|+-+|...|. ..++.++...+.+..
T Consensus 442 ~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 442 IDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 44777888999999999999999999999999887 4578889999999999999999999999 688888777776665
No 278
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=71.73 E-value=3.9 Score=29.06 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=28.6
Q ss_pred HHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHH
Q 005266 68 LERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQK 106 (705)
Q Consensus 68 Leka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak 106 (705)
++||+.+.|..+ .+++.|+.+|...|++..|+
T Consensus 2 y~kAie~~P~n~-------~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNA-------EAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCH-------HHHHHHHHHHHHCcCHHhhc
Confidence 678999999998 99999999999999987764
No 279
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=71.37 E-value=1.8e+02 Score=32.58 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHH
Q 005266 468 MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR---QQDFQEARNRLAKGLQIAH 544 (705)
Q Consensus 468 g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~---~g~~~eA~~~L~eAL~la~ 544 (705)
...-...|+=+.|+...|+|..-+..+-+..+ |+..... +...-+.+|.++.+ .|+.++|++.+...+.-.
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~---p~~~~~~--~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~- 212 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEAL---PTCDVAN--QHNIKFQYAFALNRRNKPGDREKALQILLPVLESD- 212 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc---Cccchhc--chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-
Confidence 34455778888898888888844444444433 2211111 34567777888889 999999999999886663
Q ss_pred hcccCHHHHHHHHHHHHHHHHHC----C-----ChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCc-hHHH
Q 005266 545 NHMGNLQLVSQYLTILGNLALAL----H-----DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDR-GNEM 614 (705)
Q Consensus 545 ~e~gn~~l~a~aL~~LG~i~~~l----g-----~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~-~~A~ 614 (705)
+.-++ .++.++|-||-.. + ...+|.+.|.+|.++- +| .|...++.-+....|.. ....
T Consensus 213 -~~~~~----d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---~~----~Y~GIN~AtLL~~~g~~~~~~~ 280 (374)
T PF13281_consen 213 -ENPDP----DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE---PD----YYSGINAATLLMLAGHDFETSE 280 (374)
T ss_pred -CCCCh----HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC---cc----ccchHHHHHHHHHcCCcccchH
Confidence 23343 4566677665332 1 3456777777776664 33 34444555556666665 3333
Q ss_pred HHHHHHHHH
Q 005266 615 ENDEYRRKK 623 (705)
Q Consensus 615 e~~~~~~~~ 623 (705)
+........
T Consensus 281 el~~i~~~l 289 (374)
T PF13281_consen 281 ELRKIGVKL 289 (374)
T ss_pred HHHHHHHHH
Confidence 444444333
No 280
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=69.40 E-value=15 Score=35.00 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHhhccccc--cCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Q 005266 471 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQ--MKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 548 (705)
Q Consensus 471 ~a~~nlalv~l~~gd~d~~~~ALeli~~~~~--~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g 548 (705)
.+..|+|+......+.+...+.+.+++.++. .|.. +=.+.|.+++.+.+.++|+.++++++.-|.. +-.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~------rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~---e~~ 103 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER------RRECLYYLAVGHYRLKEYSKSLRYVDALLET---EPN 103 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc------chhhhhhhHHHHHHHhhHHHHHHHHHHHHhh---CCC
Confidence 3467777777765555557777777777764 2322 2357888889999999999999999977666 245
Q ss_pred CHHH
Q 005266 549 NLQL 552 (705)
Q Consensus 549 n~~l 552 (705)
|+|-
T Consensus 104 n~Qa 107 (149)
T KOG3364|consen 104 NRQA 107 (149)
T ss_pred cHHH
Confidence 5443
No 281
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=68.88 E-value=1.6e+02 Score=30.94 Aligned_cols=159 Identities=20% Similarity=0.171 Sum_probs=95.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCC-hhhHHHHHHhhccccccCCccchhhhHHHHHH
Q 005266 439 RGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD-AESSSQAIDLIGPVYQMKDTINGVREEASLHF 517 (705)
Q Consensus 439 lG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd-~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~ 517 (705)
.+......+.+..|...|..+..... ..+..+++..|..... ......|++.++.... .+ . +.+.+
T Consensus 47 ~~~~~~~~~~~~~a~~~~~~a~~~~~-----~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~-~g----~---~~a~~ 113 (292)
T COG0790 47 NGAGSAYPPDYAKALKSYEKAAELGD-----AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA-DG----L---AEALF 113 (292)
T ss_pred ccccccccccHHHHHHHHHHhhhcCC-----hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh-cc----c---HHHHH
Confidence 34444556777788888877665222 2557777888877322 2226677776664311 11 1 55777
Q ss_pred HHHHHHHH----hcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCC-------ChHHHHHHHHHHHHHHHH
Q 005266 518 AYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH-------DTVQAREILRSSLTLAKK 586 (705)
Q Consensus 518 ~lG~~~~~----~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg-------~~~qA~~~~~~Al~LArk 586 (705)
.+|..+.. ..++.+|..++++|-. .||..- +.+...||..|...+ +..+|...|..|-..
T Consensus 114 ~lg~~~~~G~gv~~d~~~A~~~~~~Aa~-----~g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~--- 184 (292)
T COG0790 114 NLGLMYANGRGVPLDLVKALKYYEKAAK-----LGNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL--- 184 (292)
T ss_pred hHHHHHhcCCCcccCHHHHHHHHHHHHH-----cCChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh---
Confidence 78888776 4488999999998844 445332 456788888888852 222455555555444
Q ss_pred cCChhhHHHHHHHHHHHHHHc-C---CchHHHHHHHHHHHHH
Q 005266 587 LYDIPTQIWALSVLTALYQQL-G---DRGNEMENDEYRRKKL 624 (705)
Q Consensus 587 ~gD~~~q~~al~~L~~l~~~~-G---d~~~A~e~~~~~~~~~ 624 (705)
++ .-+-..||.+|..- | |+.+|..+|..+-+.-
T Consensus 185 -~~----~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 185 -GN----PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred -cC----HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 33 33444667777432 3 4566666666655544
No 282
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=66.61 E-value=2.9e+02 Score=33.29 Aligned_cols=131 Identities=15% Similarity=0.044 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~ 510 (705)
.-..+...+|.+...+..+++|..+|... ++..++..|+.. ..++++++.... +.|++..-+-
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~----~~~e~~~ecly~-------le~f~~LE~la~------~Lpe~s~llp 856 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYC----GDTENQIECLYR-------LELFGELEVLAR------TLPEDSELLP 856 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHhHHHHHHH-------HHhhhhHHHHHH------hcCcccchHH
Confidence 34677889999999999999999999763 334444444333 233444333322 1233322111
Q ss_pred hHHHHHHHHH------HHHHHhcCHHHHH------HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Q 005266 511 EEASLHFAYG------LLLMRQQDFQEAR------NRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILR 578 (705)
Q Consensus 511 ~qA~al~~lG------~~~~~~g~~~eA~------~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~ 578 (705)
+.|..+...| .++++.+.+..|. +...+|+.+++ ...-++.... +..-+.-++..+++-+|.++++
T Consensus 857 ~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq-~~~l~qv~tl-iak~aaqll~~~~~~eaIe~~R 934 (1189)
T KOG2041|consen 857 VMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQ-RFQLPQVQTL-IAKQAAQLLADANHMEAIEKDR 934 (1189)
T ss_pred HHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHH-hccchhHHHH-HHHHHHHHHhhcchHHHHHHhh
Confidence 1233333333 2355666666664 34567888885 3556555442 2222333456678888888887
Q ss_pred HH
Q 005266 579 SS 580 (705)
Q Consensus 579 ~A 580 (705)
.|
T Consensus 935 ka 936 (1189)
T KOG2041|consen 935 KA 936 (1189)
T ss_pred hc
Confidence 77
No 283
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=66.20 E-value=2.2e+02 Score=31.78 Aligned_cols=143 Identities=17% Similarity=0.118 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh----hC--ChhhHHHHHHhhcccccc
Q 005266 432 ESMIEMLRGQYAHS---VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC----IG--DAESSSQAIDLIGPVYQM 502 (705)
Q Consensus 432 ~a~~~~llG~~~~~---~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~----~g--d~d~~~~ALeli~~~~~~ 502 (705)
...+...+|.++-+ .|+.++|+..+..++.-.+.......|+. |.+|=. .+ |.+...+|.+.++..+..
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~--GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL--GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH--HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 46677788999988 99999999999987766555444433332 444433 11 222367777776654332
Q ss_pred -CCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHh--cccC--HHHHHHHHHHHHHHHHHCCChHHHHHH
Q 005266 503 -KDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAK-GLQIAHN--HMGN--LQLVSQYLTILGNLALALHDTVQAREI 576 (705)
Q Consensus 503 -~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~e-AL~la~~--e~gn--~~l~a~aL~~LG~i~~~lg~~~qA~~~ 576 (705)
|+-..|++ ++++ +...|...+....+++ +.+++.. ..|+ ..-.-=.+..+.++..-.||++.|.+.
T Consensus 256 ~~~~Y~GIN--~AtL------L~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a 327 (374)
T PF13281_consen 256 EPDYYSGIN--AATL------LMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQA 327 (374)
T ss_pred CccccchHH--HHHH------HHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44455662 3333 2334443333322222 2222210 0111 111112456677888889999999999
Q ss_pred HHHHHHHH
Q 005266 577 LRSSLTLA 584 (705)
Q Consensus 577 ~~~Al~LA 584 (705)
++.++.+.
T Consensus 328 ~e~~~~l~ 335 (374)
T PF13281_consen 328 AEKAFKLK 335 (374)
T ss_pred HHHHhhcC
Confidence 99998773
No 284
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=66.09 E-value=57 Score=42.00 Aligned_cols=184 Identities=17% Similarity=0.146 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHh---hCChhhHHHHHHhhccc-----
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFC---IGDAESSSQAIDLIGPV----- 499 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~---~~g~a~a~~nlalv~l~---~gd~d~~~~ALeli~~~----- 499 (705)
+.....-++|+++.-.|++.+|+.+|..|+.+.+. .-..|.|+=.++...+. .|..-+....+..+-+.
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 55667779999999999999999999999987543 33333333333222221 12111111111100000
Q ss_pred -----------cccCCccchhhhHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC
Q 005266 500 -----------YQMKDTINGVREEAS-LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL 567 (705)
Q Consensus 500 -----------~~~~~~~~g~~~qA~-al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l 567 (705)
-..|++.++....+. ..........-...+++|+.+|.++.... .+..-.-..+.+...+..+....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~-~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDT-SEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccc-cccCcchHHHHHHHHHHHHHHHh
Confidence 011222211100000 00011112223455778888888886554 22333336677888888877777
Q ss_pred C--------------------ChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCc-hHHHH
Q 005266 568 H--------------------DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDR-GNEME 615 (705)
Q Consensus 568 g--------------------~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~-~~A~e 615 (705)
. ...++.+.+.+++.+.-+.-+...++-.+..++.+|...|=. .+|.=
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFv 467 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFV 467 (1185)
T ss_pred hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 7 788899999999999887778889999999999999999976 44433
No 285
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=65.40 E-value=1.5e+02 Score=33.48 Aligned_cols=107 Identities=16% Similarity=0.004 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG-NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g-n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
-.||++..++-..|+...-...+..=++.+. .+ |..+.+...+.|=.-|++.+.+++|.+....+.-=-..+++ .
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt--Lrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snn--e 245 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTAT--LRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNN--E 245 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhh--hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccH--H
Confidence 3677777788888888888888887777763 55 66777777777778888877777777665554310000111 2
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 593 QIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
++.=+.-+|++....+|+..|.+++..+.+++
T Consensus 246 ~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 246 WARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 33334567888888888888888776655443
No 286
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=65.40 E-value=35 Score=36.25 Aligned_cols=93 Identities=10% Similarity=0.057 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhhcCCchH
Q 005266 90 SLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANA-FIIEGDYQSSISALQSGYVCATEISYPDL 168 (705)
Q Consensus 90 ~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~-~~~~~d~~~A~~~L~~~~~~A~~~~~~~~ 168 (705)
-.+.+...+.+.+..++.+..+|.+.. ..+|..+...|.+ |...+|...|..+++.|... .....
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~----------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~----f~~~~ 70 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDK----------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK----FPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC----------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH----HTT-H
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCC----------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----CCCCH
Confidence 345677777777889999999987422 2233455556777 55578999999999999986 44444
Q ss_pred HHHHHHHHHHHHhcccCChhHHHHHHHHhHH
Q 005266 169 QMFFATAILHVHLMQWDDENSVLRSINQCDR 199 (705)
Q Consensus 169 ~~~~~La~~~~~L~~~~~~~~v~~al~~~~~ 199 (705)
.+...=...++.+ ++.+.+-..+.++-.
T Consensus 71 ~~~~~Y~~~l~~~---~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 71 DFWLEYLDFLIKL---NDINNARALFERAIS 98 (280)
T ss_dssp HHHHHHHHHHHHT---T-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHh---CcHHHHHHHHHHHHH
Confidence 4444444444444 666677666666543
No 287
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.38 E-value=28 Score=38.03 Aligned_cols=119 Identities=12% Similarity=0.143 Sum_probs=57.8
Q ss_pred HhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccc-cccchhhHhHHH
Q 005266 56 KHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD-VAVKLWSCNFNS 134 (705)
Q Consensus 56 e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~-~~~~~W~~~f~~ 134 (705)
+|++-+++|+..=.||+.|++.- +=+.+.+|.++..-+....++.+..|.-+.=. ++.. ..||+||-+.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D-------~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s~mlasHNyWH~Al-- 255 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFD-------CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLASHNYWHTAL-- 255 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcc-------hHHHHHHHHHHHhcchhhhHHHHHHhcccchh-hhhHHHhhhhHHHHH--
Confidence 44555555555555544333222 13444455555555555445444444221111 1111 2578885543
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHhcccCChh
Q 005266 135 QLANAFIIEGDYQSSISALQSGYVCATEISY-PDLQMFFATAILHVHLMQWDDEN 188 (705)
Q Consensus 135 ~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~-~~~~~~~~La~~~~~L~~~~~~~ 188 (705)
.|...+.|..|+++|+.=+--..+.++ ....++..+--..+..+.|.+.|
T Consensus 256 ----~~iE~aeye~aleIyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld 306 (491)
T KOG2610|consen 256 ----FHIEGAEYEKALEIYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLD 306 (491)
T ss_pred ----hhhcccchhHHHHHHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHH
Confidence 455568899999999875433222222 23344444444444555555444
No 288
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=63.56 E-value=64 Score=37.11 Aligned_cols=90 Identities=16% Similarity=0.058 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHhcccCHH------------------HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh
Q 005266 529 FQEARNRLAKGLQIAHNHMGNLQ------------------LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 590 (705)
Q Consensus 529 ~~eA~~~L~eAL~la~~e~gn~~------------------l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~ 590 (705)
..||.+++++|++.+....|..+ ....+-..|+.....+|+.++|.++++.-+...- ..|
T Consensus 216 i~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-~~~- 293 (539)
T PF04184_consen 216 IVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-NLD- 293 (539)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-ccc-
Confidence 45666666666665543333221 1133456788899999999999999987664432 112
Q ss_pred hhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 591 PTQIWALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 591 ~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
..-+..+|-+.+...++++++......|.+
T Consensus 294 --~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 294 --NLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred --hhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 244566777888899999988887777764
No 289
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.36 E-value=1.2e+02 Score=35.56 Aligned_cols=136 Identities=24% Similarity=0.268 Sum_probs=79.2
Q ss_pred HcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhh--CChhhHHHHHHhhcccccc--CCccchhhhHHHHHHHHH
Q 005266 445 SVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI--GDAESSSQAIDLIGPVYQM--KDTINGVREEASLHFAYG 520 (705)
Q Consensus 445 ~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~--gd~d~~~~ALeli~~~~~~--~~~~~g~~~qA~al~~lG 520 (705)
..|+..+|...|+.+.+. |-..+..+++++|... |.....+.|+..+...... .....|. ..+.+.+|
T Consensus 224 ~~~~~~~a~~~~~~~a~~-----g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg 295 (552)
T KOG1550|consen 224 ESGELSEAFKYYREAAKL-----GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLG 295 (552)
T ss_pred cchhhhHHHHHHHHHHhh-----cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHH
Confidence 334556778888877754 3344477778887762 1222244444443332110 0000111 22566677
Q ss_pred HHHHHhc-----CHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHHHHHcCChhh
Q 005266 521 LLLMRQQ-----DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH---DTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 521 ~~~~~~g-----~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg---~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
.++.+.. ++..|+.++.+| ...||+ .+...||..|.... |.++|.++|..|- +.|+..
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~a-----A~~g~~----~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa----~~G~~~- 361 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKA-----AELGNP----DAQYLLGVLYETGTKERDYRRAFEYYSLAA----KAGHIL- 361 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHH-----HhcCCc----hHHHHHHHHHHcCCccccHHHHHHHHHHHH----HcCChH-
Confidence 7776632 677799998887 446665 46778999998877 5677888877664 446644
Q ss_pred HHHHHHHHHHHHH
Q 005266 593 QIWALSVLTALYQ 605 (705)
Q Consensus 593 q~~al~~L~~l~~ 605 (705)
+.-.|+.+|.
T Consensus 362 ---A~~~la~~y~ 371 (552)
T KOG1550|consen 362 ---AIYRLALCYE 371 (552)
T ss_pred ---HHHHHHHHHH
Confidence 4445666664
No 290
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.22 E-value=3.6 Score=44.75 Aligned_cols=118 Identities=15% Similarity=0.073 Sum_probs=78.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHH
Q 005266 440 GQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASL 515 (705)
Q Consensus 440 G~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~a 515 (705)
+.-+...|.+++|+.+|..|+.+.+. -+..+.+=+.|++....+.. |..|++ -+|+ .|..
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~---~a~l~~kr~sv~lkl~kp~~airD~d~A~e------in~D-------sa~~ 184 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPP---LAILYAKRASVFLKLKKPNAAIRDCDFAIE------INPD-------SAKG 184 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCc---hhhhcccccceeeeccCCchhhhhhhhhhc------cCcc-------cccc
Confidence 44456789999999999999988553 33445555666666555433 777776 2333 2557
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005266 516 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSL 581 (705)
Q Consensus 516 l~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al 581 (705)
|-+.|.++..+|.+.+|...|+.|.++-- +... =..+-.+.-+.+..++=+.-++++.
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kld~----dE~~----~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKLDY----DEAN----SATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhccc----cHHH----HHHHHHhccchhhhhhchhHHHHHH
Confidence 88889999999999999999999988742 2111 1134455555555555554454443
No 291
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=62.65 E-value=3.5e+02 Score=32.83 Aligned_cols=62 Identities=11% Similarity=0.221 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCC-ChHHHHHHHHH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH-DTVQAREILRS 579 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg-~~~qA~~~~~~ 579 (705)
++.-++..+-..|++++|..++-+|+++- .-|--+--.+=.+.---+.+.| ++++|..|+-.
T Consensus 997 vhlk~a~~ledegk~edaskhyveaikln---tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~ 1059 (1636)
T KOG3616|consen 997 VHLKLAMFLEDEGKFEDASKHYVEAIKLN---TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIH 1059 (1636)
T ss_pred chhHHhhhhhhccchhhhhHhhHHHhhcc---cccchhhhcccchhhHHHHHcCCChHHHHHHhhh
Confidence 67777888888999999999999999983 2332221112222333345566 78888888754
No 292
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.71 E-value=48 Score=36.29 Aligned_cols=68 Identities=18% Similarity=0.145 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
|.-|---|.-++..++|-.|...++++|+- + .+|+.+.+-.|+.=+-+.+.+|+++.|.+-+..|+.+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~-k--c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKK-K--CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhh-c--CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555577788899999999999999987 2 8899999999999999999999999999888887755
No 293
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=60.09 E-value=1.3e+02 Score=31.92 Aligned_cols=128 Identities=11% Similarity=0.073 Sum_probs=77.2
Q ss_pred HHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Q 005266 13 DYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLL 92 (705)
Q Consensus 13 e~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lL 92 (705)
...|+...+..+=+.++-+++.++ +...+ =+++|.+=+...+|.+.|...||+++...+..+ .| ....
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~~~-~~~~v----y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~-----~~--~~~Y 76 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKDKR-CTYHV----YVAYALMEYYCNKDPKRARKIFERGLKKFPSDP-----DF--WLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC-S-THH----HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H-----HH--HHHH
T ss_pred HHHHHhCChHHHHHHHHHHHcCCC-CCHHH----HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH-----HH--HHHH
Confidence 344555567777777777776544 33332 234444444444666779999999987655544 33 3444
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 005266 93 SQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (705)
Q Consensus 93 A~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~ 159 (705)
.+.+...|+...++.++++++.....+ ......|... .+.-...||......+.+....+
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~--~~~~~iw~~~-----i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKE--KQSKKIWKKF-----IEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCH--HHCHHHHHHH-----HHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCch--hHHHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHH
Confidence 788899999999999999999875421 1122345222 33345568888777766665544
No 294
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.40 E-value=65 Score=37.75 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
.....|++-..|...+|+.-+|..++..|+-... +.....+++.+|.+..+.|...+ +..|++ |.
T Consensus 211 ~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~-~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~----------dA 279 (886)
T KOG4507|consen 211 SSWVLHNMASFYWRIKGEPYQAVECAMRALHFSS-RHNKDIALLSLATVLHRAGFSADAAVILHAALD----------DA 279 (886)
T ss_pred hhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCC-cccccchhhhHHHHHHHcccccchhheeehhcc----------CC
Confidence 4566777888888889999999999999887655 35567789999999998887533 333333 11
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 542 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~l 542 (705)
... +.-+|.+|.++...|.|+....++.+|++.
T Consensus 280 ~~~---t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 280 DFF---TSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred ccc---cccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 111 234899999999999999999999888777
No 295
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.72 E-value=3.5e+02 Score=31.56 Aligned_cols=252 Identities=15% Similarity=0.129 Sum_probs=135.3
Q ss_pred ccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhh
Q 005266 124 AVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWES 203 (705)
Q Consensus 124 ~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~ 203 (705)
|...| +.| .|.+...-|+-+.|+...+..+. ...-.-.--++|.++-+++.+.+|.+ +.+.+..+.+.
T Consensus 265 ~ga~w---ll~-~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~------aad~~~~L~de 332 (546)
T KOG3783|consen 265 KGALW---LLM-EARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSR------AADSFDLLRDE 332 (546)
T ss_pred CCccH---HHH-HHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHH------HhhHHHHHHhh
Confidence 35677 555 45666666668888888877666 12222356678999999998876643 34444444430
Q ss_pred cCcccccccccchhhhhHHHHHHH-Hhhhhhhhhhhhhhhh--HHHHHHHHHHHHHHHHHhhhhHHhhhhcCC-CCCChh
Q 005266 204 IDPNRRGQCLGLLFYNELLHIFYR-LRICDYKNAAHHVDNL--DAAMKADKQKMQEIQQLSSELDALNQSLSR-PDLPSR 279 (705)
Q Consensus 204 ~~~~~~~~~~G~~~~~E~l~v~~~-L~vc~~~~~~~~v~~l--~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~-~~~~~~ 279 (705)
+ .--|.||. +--|.|+..+..++.. +....+...| .....+.. |+-.|-
T Consensus 333 ------------s---dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k------------~~~~l~~~a~K~~P~ 385 (546)
T KOG3783|consen 333 ------------S---DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFK------------VGEELLANAGKNLPL 385 (546)
T ss_pred ------------h---hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHH------------HHHHHHHhccccCch
Confidence 0 22355663 4457777766544432 2222111111 00011111 111111
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCCCccccccc-----cccCCcccccccc-cccCCCCcccccccchhhHHHHHHHHHHH
Q 005266 280 ERSALAGRQAKLQQRLRSLEDSSLTGKEFLEP-----SYFGNARQAWGDK-LVLAPSPMDGEWLPKSAVYALVDLMVVIL 353 (705)
Q Consensus 280 ~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~-~~~~~~~l~~~WLpk~~~~aL~yll~~~~ 353 (705)
| ....+..++-... .| ...+.++.. +|+-|+-..-++. +.--.....-.|....+...+.||+.+.+
T Consensus 386 E----~f~~RKverf~~~-~~--~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~ 458 (546)
T KOG3783|consen 386 E----KFIVRKVERFVKR-GP--LNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVI 458 (546)
T ss_pred h----HHHHHHHHHHhcc-cc--ccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 1 3334455554444 22 111122221 2332221110000 00000001235666777889999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHH
Q 005266 354 GRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACES 433 (705)
Q Consensus 354 ~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a 433 (705)
.|.-|+...+.++++-.+.. ..+.+ ...| ..|
T Consensus 459 lR~Lg~~~~a~~~f~i~~~~----e~~~~------------~d~w--------------------------------~~P 490 (546)
T KOG3783|consen 459 LRNLGDSEVAPKCFKIQVEK----ESKRT------------EDLW--------------------------------AVP 490 (546)
T ss_pred HHHcCCHHHHHHHHHHHHHH----HHhhc------------cccc--------------------------------ccc
Confidence 99999888888887777653 11100 1233 346
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCChhHH
Q 005266 434 MIEMLRGQYAHSVGC-YSEAAFHYVEAAKITESKSMQ 469 (705)
Q Consensus 434 ~~~~llG~~~~~~g~-~~eA~~~f~~Al~l~~~~~g~ 469 (705)
.++|-+|..+...|. +++|.+...+|-.-..+.+.+
T Consensus 491 fA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~le 527 (546)
T KOG3783|consen 491 FALYELALLYWDLGGGLKEARALLLKAREYASDYELE 527 (546)
T ss_pred HHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchh
Confidence 788899999999999 999999999987776664433
No 296
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=58.44 E-value=3.3e+02 Score=31.15 Aligned_cols=134 Identities=16% Similarity=0.099 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHH
Q 005266 434 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA 513 (705)
Q Consensus 434 ~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA 513 (705)
.....+..++.++|..+.|+ ...+++.. ...+|+ ..|+ ++.|+++..+. + ..
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL-------~~~~D~~~----rFeLAl---~lg~---L~~A~~~a~~~----~-------~~ 347 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELAL-------QFVTDPDH----RFELAL---QLGN---LDIALEIAKEL----D-------DP 347 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHH-------HHSS-HHH----HHHHHH---HCT----HHHHHHHCCCC----S-------TH
T ss_pred hHHHHHHHHHHHCCCHHHHH-------hhcCChHH----HhHHHH---hcCC---HHHHHHHHHhc----C-------cH
Confidence 33667778888888887776 34444321 222222 1244 56666666554 1 14
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 593 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q 593 (705)
..|-.+|-..+.+|+++-|..+++++ +|- ..|.-+|...|+.+ .+++-..+|.+.||....
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~-------~~L~lLy~~~g~~~----~L~kl~~~a~~~~~~n~a 408 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKA--------KDF-------SGLLLLYSSTGDRE----KLSKLAKIAEERGDINIA 408 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHC--------T-H-------HHHHHHHHHCT-HH----HHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhh--------cCc-------cccHHHHHHhCCHH----HHHHHHHHHHHccCHHHH
Confidence 58999999999999999999999865 232 22456677788764 344555778888888777
Q ss_pred HHHHHHHHH------HHHHcCCchHHH
Q 005266 594 IWALSVLTA------LYQQLGDRGNEM 614 (705)
Q Consensus 594 ~~al~~L~~------l~~~~Gd~~~A~ 614 (705)
..+...+|+ +....|+...|.
T Consensus 409 f~~~~~lgd~~~cv~lL~~~~~~~~A~ 435 (443)
T PF04053_consen 409 FQAALLLGDVEECVDLLIETGRLPEAA 435 (443)
T ss_dssp HHHHHHHT-HHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHcCCchHHH
Confidence 776666654 455555554443
No 297
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=57.54 E-value=43 Score=33.53 Aligned_cols=68 Identities=24% Similarity=0.266 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCC----ChHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQD----------FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH----DTVQAREILR 578 (705)
Q Consensus 513 A~al~~lG~~~~~~g~----------~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg----~~~qA~~~~~ 578 (705)
+..++.-|.++....+ +++|..-|++||++- .-...++..+|.+|..++ +..+|..+|+
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-------P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~ 97 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-------PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFE 97 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 3445555555544432 445666666666662 112247888888887765 4555666666
Q ss_pred HHHHHHHHc
Q 005266 579 SSLTLAKKL 587 (705)
Q Consensus 579 ~Al~LArk~ 587 (705)
.|..-..+.
T Consensus 98 kA~~~FqkA 106 (186)
T PF06552_consen 98 KATEYFQKA 106 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666554443
No 298
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=57.21 E-value=3.3e+02 Score=30.75 Aligned_cols=136 Identities=16% Similarity=0.094 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
.++.+|.+-++..+-.|++++|..-|+. ..+++..+-..+..+=+--.+.|+.+. .++|-+....+
T Consensus 118 qepLIhlLeAQaal~eG~~~~Ar~kfeA---Ml~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l------- 187 (531)
T COG3898 118 QEPLIHLLEAQAALLEGDYEDARKKFEA---MLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQL------- 187 (531)
T ss_pred chHHHHHHHHHHHHhcCchHHHHHHHHH---HhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCC-------
Confidence 5788999999999999999999999985 334566555555555444445677654 44444421111
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--hcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH--NHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~--~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
..++-..=-..+..|+++.|++.+........ +..-+ +..+-.|+--+ .-.-.-|+.+|.+....++.|+
T Consensus 188 ------~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae-R~rAvLLtAkA-~s~ldadp~~Ar~~A~~a~KL~ 259 (531)
T COG3898 188 ------PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE-RSRAVLLTAKA-MSLLDADPASARDDALEANKLA 259 (531)
T ss_pred ------chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH-HHHHHHHHHHH-HHHhcCChHHHHHHHHHHhhcC
Confidence 11222222235678999999999887654421 11111 22222222221 1122235667777766666553
No 299
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.10 E-value=2.4e+02 Score=29.22 Aligned_cols=61 Identities=20% Similarity=0.091 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHh--cccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 529 FQEARNRLAKGLQIAHN--HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 529 ~~eA~~~L~eAL~la~~--e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
.+.|...+++|+.++.. .-.||-..+.+|+.=--.|--+|++++|.++++.|+.-|-.--|
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 36799999999999975 45677777878877555566799999999999999998876544
No 300
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=56.21 E-value=2.9e+02 Score=31.70 Aligned_cols=187 Identities=12% Similarity=0.098 Sum_probs=102.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCh--hH--HHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhH
Q 005266 437 MLRGQYAHSVGCYSEAAFHYVEAAKITESK--SM--QAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 512 (705)
Q Consensus 437 ~llG~~~~~~g~~~eA~~~f~~Al~l~~~~--~g--~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~q 512 (705)
.--|...+.++++.+|+..|.+-.+-..+. .. +..+.+-+ ..|. .++.+..+..+..++.. +|. .
T Consensus 10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~gril-nAff-l~nld~Me~~l~~l~~~--~~~-------s 78 (549)
T PF07079_consen 10 CFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRIL-NAFF-LNNLDLMEKQLMELRQQ--FGK-------S 78 (549)
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHH-HHHH-HhhHHHHHHHHHHHHHh--cCC-------c
Confidence 356999999999999999998866543332 11 11111111 1111 23445544444444443 222 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHH---------HHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL---------TILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL---------~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
+...++.|++..+++.|+.|.+.|..--.-- +....+-+.-... .+.++.....|.+.+++.++.+-..-
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~-~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQI-KGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh-cccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 5677888999999999999999887553331 1222222222222 24456667889999999888876543
Q ss_pred HHH-cCChhhHHHH--HHHHHHHHH----HcCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 005266 584 AKK-LYDIPTQIWA--LSVLTALYQ----QLGDRGNEMENDEYRRKKLDELQKRLADAY 635 (705)
Q Consensus 584 Ark-~gD~~~q~~a--l~~L~~l~~----~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~ 635 (705)
-=+ =.+.....+- ...||+-|- ..-..+=+-++|++..-....++..-..+|
T Consensus 158 llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y 216 (549)
T PF07079_consen 158 LLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPY 216 (549)
T ss_pred HhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchH
Confidence 222 1111111111 112344321 112224456677776666666655555444
No 301
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.83 E-value=65 Score=36.15 Aligned_cols=99 Identities=15% Similarity=0.017 Sum_probs=65.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhh
Q 005266 436 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 436 ~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
+--+|+-++.-|+++.|...|-++-.-.++..-...+.+|+-.|-+..|++.. .++|-..-... .+....++
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~-~~~~q~v~--- 228 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDAN-ENLAQEVP--- 228 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhh-hhHHHhcC---
Confidence 34789999999999999999999766666655556667777777778888765 34433311000 00000111
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKG 539 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eA 539 (705)
+-...+.|++++..++|..|..++-.+
T Consensus 229 -~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 229 -AKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 225667788899999998888877654
No 302
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=54.44 E-value=2.9e+02 Score=29.34 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHh--
Q 005266 469 QAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ-IAHN-- 545 (705)
Q Consensus 469 ~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~-la~~-- 545 (705)
.+.+.+..+-+.+..|.++.+..++..+.......++. .....+-.+...-.+|+..+|...|++.++ ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 33445555666666777776555555444431111110 123455556667788999999999998888 2111
Q ss_pred ------------------------cccCHHHHHHHHHHHHHHHHHC------CChHHHHHHHHHHHHHHHHcCC
Q 005266 546 ------------------------HMGNLQLVSQYLTILGNLALAL------HDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 546 ------------------------e~gn~~l~a~aL~~LG~i~~~l------g~~~qA~~~~~~Al~LArk~gD 589 (705)
...+....+.++..+|.-.... ++.+++.+.|..|..+......
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 1223577889999999998888 8999999999999988665554
No 303
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=54.28 E-value=1.2e+02 Score=27.89 Aligned_cols=52 Identities=10% Similarity=-0.045 Sum_probs=27.6
Q ss_pred cCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 005266 527 QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 527 g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LAr 585 (705)
.+++-=.++|.-++.-+.+..+-...-|..|..||+-.-. -.+|++++.-|+
T Consensus 51 en~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s-------~~~Ykk~v~kak 102 (111)
T PF04781_consen 51 ENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLGS-------VKYYKKAVKKAK 102 (111)
T ss_pred cCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhhh-------HHHHHHHHHHHH
Confidence 3444444555555555544444444557777777655433 445555554444
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=54.12 E-value=87 Score=30.73 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhCChhh---HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005266 473 HAYAAVSYFCIGDAES---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKG 539 (705)
Q Consensus 473 ~~nlalv~l~~gd~d~---~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eA 539 (705)
+..+..+-+..++.+. .-.||..++|- -+..-.+-|+.++..|++++|.+.|++.
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~------------~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPE------------FPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCC------------chHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344444444556555 55666666663 1457788899999999999999999985
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=53.80 E-value=1.6e+02 Score=30.03 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAR 574 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~ 574 (705)
+...+.+|..|. ..+.+.|+..|.++|.+.+ .+ ...-...+..|+.+|+.+|++++|.
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~--~~-~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSN--PD-DNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC--CC-CCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556777766553 6789999999999999984 23 1344577889999999999999875
No 306
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=52.98 E-value=31 Score=35.91 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=101.8
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 005266 523 LMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 602 (705)
Q Consensus 523 ~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~ 602 (705)
....++.+.|.+.+.+||.++ . ++.+ .+.++|+.....|+...|.+.|+..+++ .-.|+.+...=+..||+
T Consensus 5 ~~~~~D~~aaaely~qal~la-p-----~w~~-gwfR~g~~~ekag~~daAa~a~~~~L~l--dp~D~~gaa~kLa~lg~ 75 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-P-----EWAA-GWFRLGEYTEKAGEFDAAAAAYEEVLEL--DPEDHGGAALKLAVLGR 75 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-c-----hhhh-hhhhcchhhhhcccHHHHHHHHHHHHcC--CcccccchhhhHHhhcC
Confidence 456789999999999999997 2 4444 8899999999999999999999999876 33344344433333332
Q ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhccchhccchhhHHHhhhcccccccccCCcccCCCC
Q 005266 603 LYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHHIELISKVKLEVQQFHELDIKRAMANQSMSVNLDIPESIGLST 682 (705)
Q Consensus 603 l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (705)
.- -|.++-+. .-+.|++.|.+.. +|+ |++++.-.|.++-.--|-.+..++ ..--||+-=--||.+
T Consensus 76 ~e----~p~~pP~a------YVe~LFD~~Ae~F---d~~-LVdkL~Y~vP~~l~emI~~~~~g~-F~~~lDLGCGTGL~G 140 (287)
T COG4976 76 GE----TPEKPPSA------YVETLFDQYAERF---DHI-LVDKLGYSVPELLAEMIGKADLGP-FRRMLDLGCGTGLTG 140 (287)
T ss_pred CC----CCCCCchH------HHHHHHHHHHHHH---HHH-HHHHhcCccHHHHHHHHHhccCCc-cceeeecccCcCccc
Confidence 11 11233322 3455666666643 455 999999999766544455555555 777899999999988
Q ss_pred CCCCccccccccc
Q 005266 683 PLPVQSSSRLIDL 695 (705)
Q Consensus 683 ~~~~~~~~~~~~~ 695 (705)
+.--+-..||-..
T Consensus 141 ~~lR~~a~~ltGv 153 (287)
T COG4976 141 EALRDMADRLTGV 153 (287)
T ss_pred HhHHHHHhhccCC
Confidence 8766556666433
No 307
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=52.78 E-value=3.6e+02 Score=29.88 Aligned_cols=157 Identities=13% Similarity=0.092 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH-Hhc-----CCCCCccccch---hhhHHHHHHHHHHHHHHHHhHH
Q 005266 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDAL-LKL-----GITDGVREVDL---QHSAIWMAGVYLMLLMQFLENK 414 (705)
Q Consensus 344 aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l-~~~-----~~~~~~~e~~l---~~~~~w~~~~~~~l~~~~Le~~ 414 (705)
+-..+-.+++++..|+...|...++.||=.++..+ ..+ +.+.+....+. +.+..|.
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffl--------------- 104 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFL--------------- 104 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHH---------------
Confidence 34556678999999999999999999998876533 111 11111112221 1233331
Q ss_pred HHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHhhCChhhHHHH
Q 005266 415 VAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES--KSMQAMCHAYAAVSYFCIGDAESSSQA 492 (705)
Q Consensus 415 ~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~--~~g~a~a~~nlalv~l~~gd~d~~~~A 492 (705)
+..-......++|++..|.+..+--+.++++ +.|.-.+.-- .-++.++++-+
T Consensus 105 --------------------al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~---~ALrs~~y~~L--- 158 (360)
T PF04910_consen 105 --------------------ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDY---YALRSRQYQWL--- 158 (360)
T ss_pred --------------------HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHH---HHHhcCCHHHH---
Confidence 1123345567899999999999988888765 4433222222 22233454431
Q ss_pred HHhhcccccc-CCccchhhhHHHHHHHHHHHHHHhcCH---------------HHHHHHHHHHHHHH
Q 005266 493 IDLIGPVYQM-KDTINGVREEASLHFAYGLLLMRQQDF---------------QEARNRLAKGLQIA 543 (705)
Q Consensus 493 Leli~~~~~~-~~~~~g~~~qA~al~~lG~~~~~~g~~---------------~eA~~~L~eAL~la 543 (705)
+++.+..... ..+.... -.+.-|..+++++..++. ++|...|.+|+...
T Consensus 159 i~~~~~~~~~~~~~~~~~--lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 159 IDFSESPLAKCYRNWLSL--LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHhHhhhhhhhhhhh--CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 1211111000 0000000 023667778888888888 89999999998886
No 308
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=52.01 E-value=1.2e+02 Score=38.10 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=71.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh----hCChhhHHHHHHhhccccccCCccchhhhHHH
Q 005266 439 RGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC----IGDAESSSQAIDLIGPVYQMKDTINGVREEAS 514 (705)
Q Consensus 439 lG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~----~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~ 514 (705)
..++......|+.|+..|++-..-++.+...-.+...+|+..+. .||+..+.+||+-|.-+-..|+ . ..
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~ 553 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVG----A---PL 553 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC----C---ch
Confidence 45666777789999999988766676654444456666777765 4566559999998887644344 2 34
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
-|..-+++|.+.|+|+|=...|.-|++-.
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 67777888999999999999998888764
No 309
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=51.21 E-value=2.4e+02 Score=32.04 Aligned_cols=184 Identities=15% Similarity=0.032 Sum_probs=111.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhhCChhh--HHHHHHh--hccccccCCccchhhh
Q 005266 439 RGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCIGDAES--SSQAIDL--IGPVYQMKDTINGVRE 511 (705)
Q Consensus 439 lG~~~~~~g~~~eA~~~f~~Al~l~~~---~~g~a~a~~nlalv~l~~gd~d~--~~~ALel--i~~~~~~~~~~~g~~~ 511 (705)
.+.+++...++.+|.+...+.+-.+.. ......+++.++-++.. |+... ..-++.. ....|..+ .+
T Consensus 279 ~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~-g~~a~l~lplaL~~~~~~sey~ld----yl-- 351 (482)
T KOG4322|consen 279 FAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARES-GDTACLNLPLALMFEFKRSEYSLD----YL-- 351 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhc-CCCchhhHHHHHHHHHHHHHhccc----hh--
Confidence 677788888888888877775544332 22333344444444433 55433 1111111 11111211 12
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH------HHCCChHHHHHHHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLA------LALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~------~~lg~~~qA~~~~~~Al~LAr 585 (705)
.+.+-..++..+.-.|-+..|...++.|..+-.. .|--..-+.+...-+..+ .+.-+.+.+.++++.|-....
T Consensus 352 ~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~-~GgL~drara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~f~ 430 (482)
T KOG4322|consen 352 EANENLDLALEHLALGSPKAALPLLHTAVHLILV-QGGLDDRARAIFVFANCTLAFALSCANESLDGFPRYLDLAQSIFY 430 (482)
T ss_pred hhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHh-ccchhhcceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHHHH
Confidence 4667777788888899999999999999888642 332222222221111111 133466677888899999999
Q ss_pred HcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 005266 586 KLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSI 638 (705)
Q Consensus 586 k~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~~~ 638 (705)
|++-.--...+...++..|...||..+= +...++++++.++...|
T Consensus 431 kL~~he~ildv~yf~A~~yn~lGd~~eR--------n~~AslFrk~~~~le~p 475 (482)
T KOG4322|consen 431 KLGCHEKILDVTYFSAYQYNHLGDSPER--------NLLASLFRKAWRYLELP 475 (482)
T ss_pred HccchHHHHHHHHHHHHHHHhhcCchHH--------HHHHHHHHHHHHhcCCc
Confidence 9998877888889999999999998632 24456666666554443
No 310
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.68 E-value=3.9e+02 Score=29.36 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=79.9
Q ss_pred HHHHHHhhccccccCCccchhhhH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-hcccCHHHHHHHHHHHHHHHHH
Q 005266 489 SSQAIDLIGPVYQMKDTINGVREE-ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH-NHMGNLQLVSQYLTILGNLALA 566 (705)
Q Consensus 489 ~~~ALeli~~~~~~~~~~~g~~~q-A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~-~e~gn~~l~a~aL~~LG~i~~~ 566 (705)
++-.++.+.|.--.+.+ + +...+-++..|-..+++..|-..|. |+.+-. -..-+..-.......+|..|+.
T Consensus 84 ~~~~l~~iq~rvisfeE------qv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe 156 (399)
T KOG1497|consen 84 SHFTLEKIQPRVISFEE------QVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLE 156 (399)
T ss_pred HHHHHHhcccccccHHH------HHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHh
Confidence 45555556664233332 3 4467888999999999999888776 443310 0011223445577899999999
Q ss_pred CCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCc-hHHHHHH
Q 005266 567 LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDR-GNEMEND 617 (705)
Q Consensus 567 lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~-~~A~e~~ 617 (705)
.||..+|+.+..++.=+--.+.+...++.--.-.+++....|++ +.|..+|
T Consensus 157 ~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYy 208 (399)
T KOG1497|consen 157 DDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYY 208 (399)
T ss_pred cCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887766666666655655555567777777777 3444444
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=46.47 E-value=39 Score=32.78 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=36.8
Q ss_pred HHHHHHHhhCChhh---HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005266 475 YAAVSYFCIGDAES---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKG 539 (705)
Q Consensus 475 nlalv~l~~gd~d~---~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eA 539 (705)
.+..+-+..++++. .-.||..++|- -+..-.+-|+.++..|++++|.+.|++-
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~------------~~e~d~~dg~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPN------------LKELDMFDGWLLIARGNYDEAARILREL 70 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC------------ccccchhHHHHHHHcCCHHHHHHHHHhh
Confidence 33334444566666 45555666663 1346777899999999999999999965
No 312
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.71 E-value=43 Score=26.51 Aligned_cols=32 Identities=13% Similarity=-0.025 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChh
Q 005266 436 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 467 (705)
Q Consensus 436 ~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~ 467 (705)
+|.++..+.+.|+|++|..+....+++.|++.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 57888999999999999999999999988743
No 313
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.25 E-value=78 Score=34.78 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhcccccc--------C-----------Cc-----cc
Q 005266 452 AAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQM--------K-----------DT-----IN 507 (705)
Q Consensus 452 A~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~--------~-----------~~-----~~ 507 (705)
+...|+++....++......-.++-|++++..||+.++...++..+..+.. | +| ..
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Confidence 567788888887776656666777789988888876633333321111000 0 11 12
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 005266 508 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 542 (705)
Q Consensus 508 g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~l 542 (705)
...|.....+..|+-|++.++++.|+--+++|+.-
T Consensus 120 ~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 120 NIYEGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 23335567788899999998888766666655443
No 314
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=45.17 E-value=4.4e+02 Score=28.62 Aligned_cols=58 Identities=10% Similarity=-0.003 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHcCCh----h--------------hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Q 005266 572 QAREILRSSLTLAKKLYDI----P--------------TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQK 629 (705)
Q Consensus 572 qA~~~~~~Al~LArk~gD~----~--------------~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~ 629 (705)
++.++|+.|....+..... . ..+.+..-.|..+...++.|.|..++..+....+....
T Consensus 211 ~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~~ 286 (345)
T cd09034 211 EAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIARLQAALELLKESER 286 (345)
T ss_pred HHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999988865531 1 23344455666677778889999988888887776554
No 315
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=44.82 E-value=61 Score=31.08 Aligned_cols=65 Identities=9% Similarity=-0.013 Sum_probs=41.9
Q ss_pred HHHHHhHHHhhhc---ccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Q 005266 6 EGLWGLADYHENK---GEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLL 74 (705)
Q Consensus 6 ~~L~~lAe~~~~~---~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l 74 (705)
...+.+|=.+..+ .+|..||.|||.++++ -|..+=|-+|=|=.+=.-..+||+.++..+...+..
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~----~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKS----AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhh----cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3445555554444 5999999999999972 234455556666555556667777777776654443
No 316
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=42.27 E-value=6.6e+02 Score=30.26 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH------HHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCc
Q 005266 436 EMLRGQYAHSVGCYSEAAFHYVE------AAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 436 ~~llG~~~~~~g~~~eA~~~f~~------Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~ 505 (705)
..+++..+..+|+|.||...|.+ |+++.++-. ....+.-++-.|+..+ ..+--+-.+.+ .-|
T Consensus 635 ~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlR-----MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~-keP-- 706 (1081)
T KOG1538|consen 635 DLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLR-----MFDYAQEFLGSGDPKEKKMLIRKRADWARNI-KEP-- 706 (1081)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHH-----HHHHHHHHhhcCChHHHHHHHHHHHHHhhhc-CCc--
Confidence 35789999999999999999986 444444433 2233444555555443 11111111111 112
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCHHHHHHH------HHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQQDFQEARNR------LAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 579 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~g~~~eA~~~------L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~ 579 (705)
+|++=. +...|+.+.|... +.-+..++++ ..- -+-..+-.++.-+-.++...-
T Consensus 707 ------kaAAEm-----LiSaGe~~KAi~i~~d~gW~d~lidI~rk-ld~--~ere~l~~~a~ylk~l~~~gL------- 765 (1081)
T KOG1538|consen 707 ------KAAAEM-----LISAGEHVKAIEICGDHGWVDMLIDIARK-LDK--AEREPLLLCATYLKKLDSPGL------- 765 (1081)
T ss_pred ------HHHHHH-----hhcccchhhhhhhhhcccHHHHHHHHHhh-cch--hhhhHHHHHHHHHhhccccch-------
Confidence 233322 3356787777654 3445555532 222 222345555554444444333
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Q 005266 580 SLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 628 (705)
Q Consensus 580 Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~ 628 (705)
|-++.+++||. ..+-++|-..|+..+|....+.+.++.+++.
T Consensus 766 AaeIF~k~gD~-------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy 807 (1081)
T KOG1538|consen 766 AAEIFLKMGDL-------KSLVQLHVETQRWDEAFALAEKHPEFKDDVY 807 (1081)
T ss_pred HHHHHHHhccH-------HHHhhheeecccchHhHhhhhhCcccccccc
Confidence 44667778885 2344678889999999999998888888764
No 317
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=40.91 E-value=6.4e+02 Score=29.31 Aligned_cols=85 Identities=9% Similarity=0.127 Sum_probs=64.5
Q ss_pred HhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHH
Q 005266 56 KHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQ 135 (705)
Q Consensus 56 e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~ 135 (705)
+.-+++.+|++.+|+|++..-.+. ...-..|++-.+.++++.|+++-.+||...++. +-.| |-+
T Consensus 84 esq~e~~RARSv~ERALdvd~r~i-------tLWlkYae~Emknk~vNhARNv~dRAvt~lPRV-----dqlW---yKY- 147 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNI-------TLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV-----DQLW---YKY- 147 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccc-------hHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH-----HHHH---HHH-
Confidence 446789999999999988764443 566667999999999999999999999999863 4567 332
Q ss_pred HHHHHhh--cCCHHHHHHHHHHHHHH
Q 005266 136 LANAFII--EGDYQSSISALQSGYVC 159 (705)
Q Consensus 136 lA~~~~~--~~d~~~A~~~L~~~~~~ 159 (705)
+|+. -|+..+|-++++.=...
T Consensus 148 ---~ymEE~LgNi~gaRqiferW~~w 170 (677)
T KOG1915|consen 148 ---IYMEEMLGNIAGARQIFERWMEW 170 (677)
T ss_pred ---HHHHHHhcccHHHHHHHHHHHcC
Confidence 2333 37888888888887764
No 318
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=40.87 E-value=1.9e+02 Score=33.10 Aligned_cols=86 Identities=17% Similarity=0.101 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~ 510 (705)
..+....-||..++.+|+++-|+.+|+++-. .-.+.++|...|+.+...+..+..... +
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------~~~L~lLy~~~g~~~~L~kl~~~a~~~----~------ 403 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAKD-----------FSGLLLLYSSTGDREKLSKLAKIAEER----G------ 403 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHT----T------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------ccccHHHHHHhCCHHHHHHHHHHHHHc----c------
Confidence 4577888999999999999999999987432 345667888889877755544432221 2
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQ 541 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~ 541 (705)
+.+.-| .+++..|+.++..+.|.++=+
T Consensus 404 -~~n~af---~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 404 -DINIAF---QAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp --HHHHH---HHHHHHT-HHHHHHHHHHTT-
T ss_pred -CHHHHH---HHHHHcCCHHHHHHHHHHcCC
Confidence 122222 234567899999888886633
No 319
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=40.64 E-value=4.4e+02 Score=32.68 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=16.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005266 426 EAQEACESMIEMLRGQYAHSVGCYSEAAFHY 456 (705)
Q Consensus 426 ~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f 456 (705)
...+|....+..+-|..+.++|+.+||..+.
T Consensus 36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~L 66 (932)
T KOG2053|consen 36 LKKHPNALYAKVLKALSLFRLGKGDEALKLL 66 (932)
T ss_pred HHHCCCcHHHHHHHHHHHHHhcCchhHHHHH
Confidence 3444455555555555555566666555333
No 320
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=40.57 E-value=1.3e+02 Score=31.29 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=44.6
Q ss_pred hHHHHHHhccCCCCChHHHHHHHHHHHHHHH--------HhhcchHHHHHHHHHHHHHhhcCC
Q 005266 25 VKCLEAICQSHVSFLPIIEVKTRLRISTLLL--------KHTHNVNHAKSHLERSQLLLKAIP 79 (705)
Q Consensus 25 i~CLea~~~~~~~~~p~~EA~~rLrla~iL~--------e~T~N~~~A~thLeka~~l~~~i~ 79 (705)
+.+++.+...+ .+|..+-||-+.-.|-.|+ ...++...|..+|++|..+.+.+.
T Consensus 151 ~~~~~~l~~~~-dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 151 LRVFLDLTTEW-DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHhcC-CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 66777777444 4899999999999998887 456788899999999999988875
No 321
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.35 E-value=2.9e+02 Score=32.40 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=78.1
Q ss_pred hcccHhHHhHHHHHHhccCCCCChHHHHHHH------HHHHHHHHHh---hc-chHHHHHHHHHHHHHhhcCCchhhhhh
Q 005266 17 NKGEIGKAVKCLEAICQSHVSFLPIIEVKTR------LRISTLLLKH---TH-NVNHAKSHLERSQLLLKAIPSCFELKC 86 (705)
Q Consensus 17 ~~~~i~~ai~CLea~~~~~~~~~p~~EA~~r------Lrla~iL~e~---T~-N~~~A~thLeka~~l~~~i~~~~dlK~ 86 (705)
...++..|+.||+.+... -.++.++ -.+|.++++- -. |++.|..++.+|-.+ +.|
T Consensus 261 ~~~d~e~a~~~l~~aa~~------~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~------- 325 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAES------FKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNP------- 325 (552)
T ss_pred ccccHHHHHHHHHHHHHH------HHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCc-------
Confidence 445999999999999852 1222222 2677777764 22 899999999998774 666
Q ss_pred hHHHHHHHHHHHcC---CChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 005266 87 RTFSLLSQCYHLVG---AIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (705)
Q Consensus 87 ~~~~lLA~~y~~~~---~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~ 159 (705)
.++++|+.+|.... +...|-.+...|.+.-.. ...+| +.-.+..+ .....+...|+..+.+.++.
T Consensus 326 ~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-----~A~~~-la~~y~~G--~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 326 DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-----LAIYR-LALCYELG--LGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-----HHHHH-HHHHHHhC--CCcCCCHHHHHHHHHHHHHc
Confidence 88999999999876 224555555555542211 02233 22222334 45678999999988886665
No 322
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.00 E-value=1.8e+02 Score=31.12 Aligned_cols=89 Identities=9% Similarity=0.001 Sum_probs=66.2
Q ss_pred hhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHH--HHHHHHhhcCCHHHHHHHHHHHHHHH
Q 005266 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNS--QLANAFIIEGDYQSSISALQSGYVCA 160 (705)
Q Consensus 83 dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~--~lA~~~~~~~d~~~A~~~L~~~~~~A 160 (705)
+.+=...+.|.++-.+-|+...++.+.++ ++...+- -+--+++-.. -.|.+|.-++||.+|...+.++...
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~-vek~~~k-----L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~- 281 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQD-VEKVTQK-----LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM- 281 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHH-HHHHHhh-----hhccchhHHHHhhhhhheecccchHHHHHHHhhcccc-
Confidence 55668889999999999999999988876 5544321 1111223333 3567889999999999999998875
Q ss_pred hhcCCchHHHHHHHHHHHHHh
Q 005266 161 TEISYPDLQMFFATAILHVHL 181 (705)
Q Consensus 161 ~~~~~~~~~~~~~La~~~~~L 181 (705)
.+....++..-+.|++.+
T Consensus 282 ---D~~~~~a~NnKALcllYl 299 (366)
T KOG2796|consen 282 ---DPRNAVANNNKALCLLYL 299 (366)
T ss_pred ---CCCchhhhchHHHHHHHH
Confidence 666788888888888877
No 323
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.96 E-value=66 Score=36.26 Aligned_cols=73 Identities=10% Similarity=0.058 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHhhccccccC-CccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 005266 471 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMK-DTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 545 (705)
Q Consensus 471 ~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~-~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~ 545 (705)
++.+.+..++...||+..+-++|+-++.-.... ..-.+. ....+|..|.+|+..+||.+|.+.|...|-.-.+
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~--~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPAC--HISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcch--heehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777899655444444322210000 000111 1347888999999999999999999998877643
No 324
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.49 E-value=2.9e+02 Score=29.30 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=63.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhh------
Q 005266 357 KGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA------ 430 (705)
Q Consensus 357 ~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~------ 430 (705)
.|.+++|...+.+|+--++...-|-+ |+ ..-|.--- -+..-+|-|...|.|...|+-++.+-
T Consensus 191 ~~~ykEA~~~YreAi~~l~~L~lkEk--P~--------e~eW~eLd--k~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 191 LGRYKEASSKYREAIICLRNLQLKEK--PG--------EPEWLELD--KMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccC--CC--------ChHHHHHH--HhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 36678999999999998666432222 22 22332100 00112233555577777777766544
Q ss_pred ---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 005266 431 ---CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 465 (705)
Q Consensus 431 ---~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~ 465 (705)
..-.+++-.|-.+....+.+||.+-|..++++.++
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 44678888999999999999999999999988665
No 325
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.37 E-value=4.3e+02 Score=26.66 Aligned_cols=130 Identities=16% Similarity=0.106 Sum_probs=82.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHH
Q 005266 440 GQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAY 519 (705)
Q Consensus 440 G~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~l 519 (705)
++-.-+.|..++|++-|.. +.-++-.+--.++....+.+....||..+.-.+.+-+...-..|. . . +=.+-.-.
T Consensus 65 AL~lA~~~k~d~Alaaf~~-lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~--~-~--rd~ARlra 138 (221)
T COG4649 65 ALKLAQENKTDDALAAFTD-LEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ--I-G--RDLARLRA 138 (221)
T ss_pred HHHHHHcCCchHHHHHHHH-HHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc--h-h--hHHHHHHH
Confidence 3444556777777777764 333332222346677788888888886664444443333212221 1 1 22355666
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005266 520 GLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSL 581 (705)
Q Consensus 520 G~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al 581 (705)
+++++-.|.|++....++ .++ ..+|+--+ .+--.||-.-+..|++..|.+.+..-.
T Consensus 139 a~lLvD~gsy~dV~srve---pLa--~d~n~mR~-sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVE---PLA--GDGNPMRH-SAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHhccccHHHHHHHhh---hcc--CCCChhHH-HHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 777889999999887766 343 47885444 477888999999999998888887543
No 326
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.13 E-value=3.1e+02 Score=28.87 Aligned_cols=89 Identities=11% Similarity=-0.000 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHH-----H------HHHHHcCChh-hHHH-HHH
Q 005266 532 ARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSS-----L------TLAKKLYDIP-TQIW-ALS 598 (705)
Q Consensus 532 A~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~A-----l------~LArk~gD~~-~q~~-al~ 598 (705)
-+..+++|++-+ +..+++.+.......+|.+|...|++.+|+.++--+ . ......++.. .-.+ +-.
T Consensus 69 r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra 147 (260)
T PF04190_consen 69 RKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARA 147 (260)
T ss_dssp HHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred HHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 455666677766 456677777777778888888888888888777322 1 1111122221 1111 112
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 599 VLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 599 ~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
+| -|...|+..-|.+.+..+.+.
T Consensus 148 VL--~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VL--QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HH--HHHHTTBHHHHHHHHHHHHHH
T ss_pred HH--HHHHhcCHHHHHHHHHHHHHH
Confidence 22 455678887788777766655
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=37.65 E-value=90 Score=23.78 Aligned_cols=39 Identities=23% Similarity=0.178 Sum_probs=28.2
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 005266 559 ILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLT 601 (705)
Q Consensus 559 ~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~ 601 (705)
.|+.+|...||.+.|++.++..+. -||...+.-+-..|.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~----~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE----EGDEAQRQEARALLA 42 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH----cCCHHHHHHHHHHHh
Confidence 477888999999999999988873 466655555554443
No 328
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=37.48 E-value=98 Score=34.42 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=61.5
Q ss_pred HHHHHHHH-HHHHHhhCChhhHHHHHHhhccccccCCcc---chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 005266 469 QAMCHAYA-AVSYFCIGDAESSSQAIDLIGPVYQMKDTI---NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 544 (705)
Q Consensus 469 ~a~a~~nl-alv~l~~gd~d~~~~ALeli~~~~~~~~~~---~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~ 544 (705)
...+..|+ -.+|.+.+.++-++.-+.-..++ ..|+-+ ... .-.+.|.+|..++...++.+|.-+|.+|...+.
T Consensus 175 g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~v-s~~Di~~~~~sq--~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~ 251 (413)
T COG5600 175 GLYYIANLLFQIYLRLGRFKLCENFLKASKEV-SMPDISEYQKSQ--VVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCP 251 (413)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcccc-cccccchhhhcc--eeehhhHHHHHHHHHHhHHHHHHHHHHHHHhCh
Confidence 34556666 78899988887766555544443 223322 111 234889999999999999999999999998875
Q ss_pred h-cccCHHHHHHHHHHHHHH
Q 005266 545 N-HMGNLQLVSQYLTILGNL 563 (705)
Q Consensus 545 ~-e~gn~~l~a~aL~~LG~i 563 (705)
. ..+|.......+.-.|-+
T Consensus 252 ~l~~~n~~rIl~~~ipt~Ll 271 (413)
T COG5600 252 WLITRNRKRILPYYIPTSLL 271 (413)
T ss_pred hhhhcchheehhHHhhHHHH
Confidence 3 345555555555555433
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=37.40 E-value=1e+02 Score=23.41 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 005266 517 FAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 560 (705)
Q Consensus 517 ~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~L 560 (705)
+.++.+|...|+++.|+..|.+.+. .|+......+-.+|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~-----~~~~~q~~eA~~LL 41 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE-----EGDEAQRQEARALL 41 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH-----cCCHHHHHHHHHHH
Confidence 4578889999999999999999873 35555555555554
No 330
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=37.27 E-value=6.8e+02 Score=28.60 Aligned_cols=107 Identities=8% Similarity=-0.118 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 593 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q 593 (705)
...+..+.++...+++.+|.+.+.+.+--++ -..|..+...++..++.++-+.+....+.-++-.+....++-.-.+-.
T Consensus 274 E~l~R~A~il~A~~q~s~A~~ll~kL~vqc~-k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~ 352 (482)
T KOG4322|consen 274 ENLCRFAHILHADEQVSYAYALLNKLMVQCD-KGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLE 352 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhh
Confidence 3555677888889999999999999888886 477888999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005266 594 IWALSVLTALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 594 ~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
..+...|+..+-..|-|.+|......+.
T Consensus 353 a~~~L~LAl~~L~LG~pk~Al~lLh~a~ 380 (482)
T KOG4322|consen 353 ANENLDLALEHLALGSPKAALPLLHTAV 380 (482)
T ss_pred hhchHHHHHHHHHcCChHHHHHHHHhhh
Confidence 8888889999999999999988776654
No 331
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=36.73 E-value=4.2e+02 Score=26.03 Aligned_cols=95 Identities=20% Similarity=0.138 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 593 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q 593 (705)
..+.....+-...++.+++...|. ||+.-+ =++ ...-..-|++|...|+..+|...++..- .+.+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~-ALrvLR--P~~----~e~~~~~~~l~i~r~~w~dA~rlLr~l~------~~~~~~ 77 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLD-ALRVLR--PEF----PELDLFDGWLHIVRGDWDDALRLLRELE------ERAPGF 77 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHH-HHHHhC--CCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHh------ccCCCC
Confidence 356666666778889999999888 777763 223 2356678999999999999999888853 233334
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 594 IWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 594 ~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
..+-..++-.+...||++ +..++.+..+
T Consensus 78 p~~kALlA~CL~~~~D~~----Wr~~A~evle 105 (160)
T PF09613_consen 78 PYAKALLALCLYALGDPS----WRRYADEVLE 105 (160)
T ss_pred hHHHHHHHHHHHHcCChH----HHHHHHHHHh
Confidence 455556777788889875 5555444443
No 332
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.96 E-value=6.1e+02 Score=27.33 Aligned_cols=143 Identities=11% Similarity=0.087 Sum_probs=96.8
Q ss_pred cCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccC---Cc-cchhhhHH-HHHHHHHHHHHHhcCHHHHHHHHH
Q 005266 463 TESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMK---DT-INGVREEA-SLHFAYGLLLMRQQDFQEARNRLA 537 (705)
Q Consensus 463 ~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~---~~-~~g~~~qA-~al~~lG~~~~~~g~~~eA~~~L~ 537 (705)
+.+...|--...-++-+|...|++......|.-+..-|..- +| ..|- |. ..|-.--..|..+.+...-+..++
T Consensus 138 AKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGt--QLLEiYAlEIQmYT~qKnNKkLK~lYe 215 (440)
T KOG1464|consen 138 AKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGT--QLLEIYALEIQMYTEQKNNKKLKALYE 215 (440)
T ss_pred hhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccc--hhhhhHhhHhhhhhhhcccHHHHHHHH
Confidence 33344444455666777777677666555555444433321 11 2333 22 233333455677888888889999
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh-hHHHHHHHHHHHHHHcC
Q 005266 538 KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP-TQIWALSVLTALYQQLG 608 (705)
Q Consensus 538 eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~-~q~~al~~L~~l~~~~G 608 (705)
+||.+- ..+-.|.+.+-.--.=|..|++-|+.++|.--+-.|+.=-.++|.++ +++.-+..|+.+....|
T Consensus 216 qalhiK-SAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 216 QALHIK-SAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHhh-ccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 999995 67888887776666667889999999999988888888888888765 56666778888888877
No 333
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.25 E-value=5.9e+02 Score=26.72 Aligned_cols=107 Identities=7% Similarity=0.005 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHH-HHHHHHHHHHHHHHcCChhhHH
Q 005266 516 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQ-AREILRSSLTLAKKLYDIPTQI 594 (705)
Q Consensus 516 l~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~q-A~~~~~~Al~LArk~gD~~~q~ 594 (705)
++.-+...+..|++..|-+..--=++... ..+. .........+..++...+..+. =.+..+.|+.+.+..+...+--
T Consensus 13 L~~Ga~~ll~~~Q~~sg~DL~~lliev~~-~~~~-~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp 90 (260)
T PF04190_consen 13 LYSGALILLKHGQYGSGADLALLLIEVYE-KSED-PVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP 90 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTT----SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHH-HcCC-CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence 34444555566677776665554444442 1222 2233355677777777765553 4477889999996666666777
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 595 WALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 595 ~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
.-+..+|..+...|++..|..++-+..+-+
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~ 120 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFLLGTDPS 120 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHTS-HHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhcCChh
Confidence 888899999999999999999887665433
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.70 E-value=1.1e+03 Score=29.42 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 463 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~ 463 (705)
..+.++.-.|.++.+.|++++|..+|.+++...
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 457788999999999999999999999988653
No 335
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.59 E-value=2.8e+02 Score=31.59 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 545 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~ 545 (705)
.+..-|++.+++|+.++|.++|..|......
T Consensus 269 L~LLQGV~~yHqg~~deAye~le~a~~~l~e 299 (568)
T KOG2561|consen 269 LELLQGVVAYHQGQRDEAYEALESAHAKLLE 299 (568)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4466799999999999999999998777643
No 336
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.40 E-value=6.8e+02 Score=27.15 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=85.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHH
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHF 517 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~ 517 (705)
.-|.-.+..|++.+|...|..++...+++ ..+.+.++..++..|+.+.+...|+.+-.-.. -+..+++ + +..
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~---~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l--~--a~i 210 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPEN---SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGL--Q--AQI 210 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCccc---chHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHH--H--HHH
Confidence 34566788999999999999999887765 34567778888888987776666663221100 0111111 1 111
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 005266 518 AYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWAL 597 (705)
Q Consensus 518 ~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al 597 (705)
-+-...-..++..+..+.+. +.-+|. .+-..++..++..|+.+.|.+.+-.=+.--+.-.| +++ -
T Consensus 211 ~ll~qaa~~~~~~~l~~~~a-------adPdd~----~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d--~~~--R 275 (304)
T COG3118 211 ELLEQAAATPEIQDLQRRLA-------ADPDDV----EAALALADQLHLVGRNEAALEHLLALLRRDRGFED--GEA--R 275 (304)
T ss_pred HHHHHHhcCCCHHHHHHHHH-------hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC--cHH--H
Confidence 11111122344444443333 222332 35567899999999999999888665443333333 222 2
Q ss_pred HHHHHHHHHcCCch
Q 005266 598 SVLTALYQQLGDRG 611 (705)
Q Consensus 598 ~~L~~l~~~~Gd~~ 611 (705)
..|=.+....|..+
T Consensus 276 k~lle~f~~~g~~D 289 (304)
T COG3118 276 KTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHhcCCCC
Confidence 33445666667433
No 337
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=32.28 E-value=63 Score=36.90 Aligned_cols=85 Identities=12% Similarity=0.040 Sum_probs=67.4
Q ss_pred hcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHH
Q 005266 58 THNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLA 137 (705)
Q Consensus 58 T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA 137 (705)
.+.++.|...+.||..|.++...++..| |..|.+.+....|.+=+.|||+.++. ... .++.+|
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anR-------a~a~lK~e~~~~Al~Da~kaie~dP~------~~K----~Y~rrg 79 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANR-------ALAHLKVESFGGALHDALKAIELDPT------YIK----AYVRRG 79 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechh-------hhhheeechhhhHHHHHHhhhhcCch------hhh----eeeecc
Confidence 4669999999999999988776555444 34677888888888888899998872 112 445579
Q ss_pred HHHhhcCCHHHHHHHHHHHHHH
Q 005266 138 NAFIIEGDYQSSISALQSGYVC 159 (705)
Q Consensus 138 ~~~~~~~d~~~A~~~L~~~~~~ 159 (705)
+.++..+.+..|...|+.+..+
T Consensus 80 ~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 80 TAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred HHHHhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999998886
No 338
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=32.20 E-value=5.2e+02 Score=26.31 Aligned_cols=52 Identities=12% Similarity=-0.005 Sum_probs=32.2
Q ss_pred HcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccc
Q 005266 445 SVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQ 501 (705)
Q Consensus 445 ~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~ 501 (705)
..+.+..|.+.|..|-..... .+.+++++++......+. +..|++.++..|+
T Consensus 85 ~~~~l~~a~r~~~~aC~~n~~-----~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCd 140 (248)
T KOG4014|consen 85 DDASLSKAIRPMKIACDANIP-----QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACD 140 (248)
T ss_pred CccCHHHHHHHHHHHhccCCH-----HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhcc
Confidence 356777888888877654222 237778888776211111 6777777766655
No 339
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.86 E-value=1.1e+02 Score=28.82 Aligned_cols=81 Identities=16% Similarity=0.060 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHhc---cC--CCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhc
Q 005266 281 RSALAGRQAKLQQRLRSL---ED--SSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGR 355 (705)
Q Consensus 281 ~~~l~~~~~~lq~~i~~~---~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~ 355 (705)
.+.+...+.+++..++.+ .+ .+..-.+|++.-.|-.++..++++ .+-|++- -+.
T Consensus 29 ~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~k--------V~v~lG~-------------g~~ 87 (140)
T PRK03947 29 LEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDK--------VIVSLGA-------------GYS 87 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCe--------EEEEcCC-------------CEE
Confidence 334455555555555441 21 112224677766666666666666 3445443 111
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhcC
Q 005266 356 PKGLFKECMQRIQSGMQTIQDALLKLG 382 (705)
Q Consensus 356 ~~g~~~ka~k~l~~al~~i~~~l~~~~ 382 (705)
..-++++|.+++++-...+++.+.++.
T Consensus 88 vE~~~~eA~~~l~~~~~~l~~~~~~l~ 114 (140)
T PRK03947 88 AEKDLDEAIEILDKRKEELEKALEKLE 114 (140)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222447888888888888777666544
No 340
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=31.00 E-value=5e+02 Score=28.71 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=80.5
Q ss_pred HhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHH--HHHHH
Q 005266 525 RQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWAL--SVLTA 602 (705)
Q Consensus 525 ~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al--~~L~~ 602 (705)
+-++.++|++++.+-..-.+ ...-+.-+....+.+|.+++..||..++.+..+..-..-.+..+++--+++. ..=..
T Consensus 87 ~~~D~~~al~~Le~i~~~~~-~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssq 165 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLK-EYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQ 165 (380)
T ss_pred HhccHHHHHHHHHHHHHHHH-hhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHH
Confidence 45689999999999988874 5666667888899999999999999999999999998888888887655554 23356
Q ss_pred HHHHcCCchHHHHHHHHHHHHH
Q 005266 603 LYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 603 l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
.|+.-||+.....+.-.|...+
T Consensus 166 Yyk~~~d~a~yYr~~L~YL~~~ 187 (380)
T KOG2908|consen 166 YYKKIGDFASYYRHALLYLGCS 187 (380)
T ss_pred HHHHHHhHHHHHHHHHHHhccc
Confidence 8889999988888777777665
No 341
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=30.84 E-value=70 Score=34.69 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhcc
Q 005266 40 PIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTS 117 (705)
Q Consensus 40 p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~ 117 (705)
-..||+.-|+-|.=+. -.+|.++|-+.+++|+.+.+..| .+.-...+....-+.+=.|-+.-.||+..++
T Consensus 112 ~~kEA~~Al~~A~~~~-~~Gk~ekA~~lfeHAlalaP~~p-------~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSR-KDGKLEKAMTLFEHALALAPTNP-------QILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred hhHHHHHHHHHHHHHH-hccchHHHHHHHHHHHhcCCCCH-------HHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 3556666665554433 36899999999999999988887 4444444444444444445555556666665
No 342
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=30.65 E-value=6.4e+02 Score=26.27 Aligned_cols=104 Identities=21% Similarity=0.176 Sum_probs=62.0
Q ss_pred HcCCHHHHHHHHHHHHHhc---CCh---h---HHHHHHHHHHHHHHhhCChhh--HHHHHHhhccccccCCccchhhhHH
Q 005266 445 SVGCYSEAAFHYVEAAKIT---ESK---S---MQAMCHAYAAVSYFCIGDAES--SSQAIDLIGPVYQMKDTINGVREEA 513 (705)
Q Consensus 445 ~~g~~~eA~~~f~~Al~l~---~~~---~---g~a~a~~nlalv~l~~gd~d~--~~~ALeli~~~~~~~~~~~g~~~qA 513 (705)
..|+|+.|+....-|++.. +++ . .-+--..+-+......|.+-+ +.+.++-+..-.+.|+. + +|
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~---v--rA 169 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDE---V--RA 169 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChH---H--HH
Confidence 4688888888888888762 221 1 111223333444444565433 44444444333344542 1 46
Q ss_pred HHHHHHHHHHH---------HhcCHHHHHHHHHHHHHHHHhcccCHHHHH
Q 005266 514 SLHFAYGLLLM---------RQQDFQEARNRLAKGLQIAHNHMGNLQLVS 554 (705)
Q Consensus 514 ~al~~lG~~~~---------~~g~~~eA~~~L~eAL~la~~e~gn~~l~a 554 (705)
-.|-..|.+++ ..++..+|..+|++|+++- ...|-.....
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~-~k~GVK~~i~ 218 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLN-DKCGVKKDIE 218 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhC-CCCChHHHHH
Confidence 67888898885 3457889999999999995 5566655443
No 343
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=30.33 E-value=51 Score=37.61 Aligned_cols=89 Identities=17% Similarity=0.103 Sum_probs=60.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh-HHHHHHhhccccccCCccchhhhHHHHHHHHH
Q 005266 442 YAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGVREEASLHFAYG 520 (705)
Q Consensus 442 ~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~-~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG 520 (705)
-....+.|+.|...|.+|+++.++.. .-.-|=+..++..+++.+ ...|+..++- .|. .+-+|+..|
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca---~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~-------~~K~Y~rrg 79 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCA---IYFANRALAHLKVESFGGALHDALKAIEL---DPT-------YIKAYVRRG 79 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcce---eeechhhhhheeechhhhHHHHHHhhhhc---Cch-------hhheeeecc
Confidence 34456789999999999999988621 001112355566667655 3333333332 132 345889999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHH
Q 005266 521 LLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 521 ~~~~~~g~~~eA~~~L~eAL~la 543 (705)
.+.+..+++-+|+..|+....+.
T Consensus 80 ~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 80 TAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred HHHHhHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999888775
No 344
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=30.03 E-value=1.2e+03 Score=29.16 Aligned_cols=134 Identities=15% Similarity=0.099 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh-HHHHHHhhccccccCCccchh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~-~~~ALeli~~~~~~~~~~~g~ 509 (705)
.+-..+..+-.++..+|++++|...|++|...+++.. - ...+=+.|.+.++|.. -..|+.+...+ |.
T Consensus 75 ~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ee--l--l~~lFmayvR~~~yk~qQkaa~~LyK~~---pk----- 142 (932)
T KOG2053|consen 75 TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEE--L--LYHLFMAYVREKSYKKQQKAALQLYKNF---PK----- 142 (932)
T ss_pred CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHhC---Cc-----
Confidence 3566777888999999999999999999999888722 1 2333456677777766 66777776643 43
Q ss_pred hhHH-HHHHHHHHHHHHhcCHHHHHH--HHHHHHHHHH---hcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005266 510 REEA-SLHFAYGLLLMRQQDFQEARN--RLAKGLQIAH---NHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 579 (705)
Q Consensus 510 ~~qA-~al~~lG~~~~~~g~~~eA~~--~L~eAL~la~---~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~ 579 (705)
++ .+|.++.+........++... .+--|-+++. ...|--..++.+...+ +|.-.+|+.++|.+.+.-
T Consensus 143 --~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl-~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 143 --RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYL-LILELQGKYQEALEFLAI 215 (932)
T ss_pred --ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHH-HHHHhcccHHHHHHHHHH
Confidence 12 256666666655566666655 1222222221 2223334444444444 788889999999988854
No 345
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=29.43 E-value=6.2e+02 Score=25.77 Aligned_cols=172 Identities=16% Similarity=0.174 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh--hCChhhHHHHHHhhccccccCCccchh
Q 005266 433 SMIEMLRGQYAHS-VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC--IGDAESSSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 433 a~~~~llG~~~~~-~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~--~gd~d~~~~ALeli~~~~~~~~~~~g~ 509 (705)
|..-++||.|.-. +.+|++|...|..- ..++ +-.-...-.+.-+.. -|+......|.+-+.-.|..-.
T Consensus 34 Pe~C~lLgdYlEgi~knF~~A~kv~K~n---Cden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~----- 104 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNFQAAVKVFKKN---CDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANI----- 104 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc---cccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCC-----
Confidence 5556688888876 45677777777641 1221 111123333333333 2333335555443333333111
Q ss_pred hhHHHHHHHHHHHHHHh-----cC--HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC-----------CCh-
Q 005266 510 REEASLHFAYGLLLMRQ-----QD--FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL-----------HDT- 570 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~-----g~--~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l-----------g~~- 570 (705)
..+...+|+++..- ++ .+.|.+++++|-.+ + ..++++ .|+..|... |.+
T Consensus 105 ---~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl-----~--~~~aCf--~LS~m~~~g~~k~~t~ap~~g~p~ 172 (248)
T KOG4014|consen 105 ---PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL-----E--DGEACF--LLSTMYMGGKEKFKTNAPGEGKPL 172 (248)
T ss_pred ---HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC-----C--CchHHH--HHHHHHhccchhhcccCCCCCCCc
Confidence 23555567666432 22 56788998877333 2 244443 355556554 111
Q ss_pred HHH-----HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHH
Q 005266 571 VQA-----REILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDR-GNEMENDEYRRKKLDEL 627 (705)
Q Consensus 571 ~qA-----~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~-~~A~e~~~~~~~~~~~l 627 (705)
..+ .+--+.|++.|-|.-+. ...|+-.++.++|. +||- ++-.+-.+.+.+...++
T Consensus 173 ~~~~~~~~~kDMdka~qfa~kACel-~~~~aCAN~SrMyk-lGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 173 DRAELGSLSKDMDKALQFAIKACEL-DIPQACANVSRMYK-LGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred chhhhhhhhHhHHHHHHHHHHHHhc-CChHHHhhHHHHHH-ccCCCCccHHHHHHHHHHHHHH
Confidence 000 12234455555554443 24677788899996 5654 33333333344333333
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.44 E-value=7.2e+02 Score=26.79 Aligned_cols=131 Identities=13% Similarity=0.102 Sum_probs=74.5
Q ss_pred cCCHHHHHHHHHHHHHhcCChhHHHH-HHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHH
Q 005266 446 VGCYSEAAFHYVEAAKITESKSMQAM-CHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYG 520 (705)
Q Consensus 446 ~g~~~eA~~~f~~Al~l~~~~~g~a~-a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG 520 (705)
..+.++|+.-|++.+.+.++...|.+ ++-.+--++.+.|++++ +.+.|..+...-...-+..++ -+..-|+..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsI--N~IlDyiSt 117 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSI--NSILDYIST 117 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHH--HHHHHHHhh
Confidence 34778899999999999888665554 44444556666788877 666666666542211111111 011111111
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 521 LLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 521 ~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
..+.+--.++++.+|..- +.-.|.++---+-+-||.+|+..|++..-.+.+++--.-+
T Consensus 118 -----S~~m~LLQ~FYeTTL~AL-kdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 118 -----SKNMDLLQEFYETTLDAL-KDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred -----hhhhHHHHHHHHHHHHHH-HhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 112222233344444433 2334667766788889999999998887777766544433
No 347
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=28.40 E-value=4.8e+02 Score=29.77 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=18.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcC
Q 005266 440 GQYAHSVGCYSEAAFHYVEAAKITE 464 (705)
Q Consensus 440 G~~~~~~g~~~eA~~~f~~Al~l~~ 464 (705)
+.-+.+++.|..|...|..|+.+..
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcs 207 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCS 207 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4556677888888888888887743
No 348
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=28.21 E-value=94 Score=27.25 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=31.2
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 005266 427 AQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 465 (705)
Q Consensus 427 a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~ 465 (705)
+.+|.+..+.+.++..++..|++++|...+...++..++
T Consensus 16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 16 AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 456678889999999999999999999999998877554
No 349
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=27.52 E-value=1e+02 Score=22.27 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLA 537 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~ 537 (705)
.++.+|.....+|++++|...++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 57888999999999999999955
No 350
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=27.20 E-value=4.2e+02 Score=23.10 Aligned_cols=61 Identities=15% Similarity=0.066 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILR 578 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~ 578 (705)
..+.|.+|.+++..|++++|.+.|-+.++.. +..++.. +-..|=.+|-.+|....-..-|+
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d-r~~~~~~----ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRD-RDYEDDA----ARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--TTCCCCH----HHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccccccH----HHHHHHHHHHHcCCCChHHHHHH
Confidence 4688999999999999999999999998885 3332311 22333355555555443333333
No 351
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.51 E-value=4.1e+02 Score=28.84 Aligned_cols=78 Identities=15% Similarity=0.071 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 590 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~ 590 (705)
...+..-..++..-.+...++.-|..|-..|+..-+.|++.++.=..=|-.+..-.|+.-|..++-+|++=..-..+.
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d 242 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMD 242 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccch
Confidence 345666677788888899999999999999988889999998654444444555668999999999998766655554
No 352
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=26.49 E-value=1e+02 Score=28.75 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChh
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKS 467 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~ 467 (705)
-+|-.+...|++++|..||-.|+...+++.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 568888889999999999999999998865
No 353
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=26.16 E-value=6.5e+02 Score=25.03 Aligned_cols=81 Identities=11% Similarity=0.183 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Q 005266 469 QAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 548 (705)
Q Consensus 469 ~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g 548 (705)
......|...+.+..++++.+...++.+...- .|.+. ...+....|.-|......|+..++++...++++.. +..|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~-~~~~~--~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l-~~lg 202 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKIL-DPEDD--LYERILFNFLKGIILYKEGQKESGEEKIEQAIEIF-DELG 202 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh-chhhh--HHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH-HHcC
Confidence 34457777777777677666677777666652 23322 23367788999999999999999999999999998 4677
Q ss_pred CHHHH
Q 005266 549 NLQLV 553 (705)
Q Consensus 549 n~~l~ 553 (705)
.+.+.
T Consensus 203 ~~~~~ 207 (220)
T TIGR01716 203 YPTLA 207 (220)
T ss_pred CHHHH
Confidence 75553
No 354
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=25.81 E-value=1.6e+02 Score=21.28 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHHHhcC
Q 005266 436 EMLRGQYAHSVGCYSEAAFH--YVEAAKITE 464 (705)
Q Consensus 436 ~~llG~~~~~~g~~~eA~~~--f~~Al~l~~ 464 (705)
.+.+|-....+|++++|+.. |.-+..++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 45678899999999999999 446655543
No 355
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=25.17 E-value=1.1e+03 Score=27.06 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 468 MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 468 g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
..-++++.+-.++.-.||+....+-+++.-+...+..-.. .+-|..|.+|+.-+||.+|.+.+...|-.-
T Consensus 233 LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c------~VTY~VGFayLmmrryadai~~F~niLlyI 302 (525)
T KOG3677|consen 233 LGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMC------RVTYQVGFAYLMMRRYADAIRVFLNILLYI 302 (525)
T ss_pred hhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccce------eEeeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577777777778996666666665443212111111 123778999999999999999988777654
No 356
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=24.47 E-value=6.4e+02 Score=24.63 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 005266 429 EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 463 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~ 463 (705)
.|..+.+.+.-|.+++..|+++||...|..-..-.
T Consensus 40 rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 40 RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 34567788899999999999999999998744433
No 357
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=24.28 E-value=2.5e+02 Score=30.04 Aligned_cols=87 Identities=13% Similarity=-0.018 Sum_probs=68.8
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 005266 523 LMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 602 (705)
Q Consensus 523 ~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~ 602 (705)
+...-....|++++..||-.| +.-|++...+.+..+-|-.|+...+++-|..++..|+.+-.+-.-.-++...-.-|..
T Consensus 49 ~~s~~~~~n~~e~~d~ALm~A-e~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~ 127 (368)
T COG5091 49 WHSDATMENAKELLDKALMTA-EGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNK 127 (368)
T ss_pred hhcccChhhHHHHHHHHHHhh-hccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhH
Confidence 445566888999999999999 5789999999888899999999999999999999999996665555455555555555
Q ss_pred HHHHcCCc
Q 005266 603 LYQQLGDR 610 (705)
Q Consensus 603 l~~~~Gd~ 610 (705)
.+..+.+.
T Consensus 128 ~~kkQ~~~ 135 (368)
T COG5091 128 KNKKQKDS 135 (368)
T ss_pred hhHhhccc
Confidence 66555443
No 358
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=23.77 E-value=1.6e+02 Score=36.86 Aligned_cols=96 Identities=11% Similarity=0.020 Sum_probs=61.2
Q ss_pred HHHHHHhhccc-cccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC
Q 005266 489 SSQAIDLIGPV-YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL 567 (705)
Q Consensus 489 ~~~ALeli~~~-~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l 567 (705)
+++|+..++.+ +.|||-.-|- .+.|..|.+...+-+.+.-.+.+.+||.-... .-+.-.--.=|.--+.+|.++
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 565 (932)
T PRK13184 491 YDQALIFYRRIRESFPGRKEGY----EAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKALVYQRL 565 (932)
T ss_pred HHHHHHHHHHHhhcCCCcccch----HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHHHHHHHh
Confidence 77888877776 4679866666 36788888877765544444666667666532 222222222233344678889
Q ss_pred CChHHHHHHHHHHHHHHHHcCC
Q 005266 568 HDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 568 g~~~qA~~~~~~Al~LArk~gD 589 (705)
|++.+=.++|.-|+..--..+.
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 566 GEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred hhHHHHHHHHHHHHHhcCCCCc
Confidence 9999999888888765444443
No 359
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=22.26 E-value=1.7e+02 Score=31.86 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=47.3
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 522 LLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 522 ~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
-....|+.+.|...+..||+++ -.|+ ++|..+|.+.-.-.+.-+|..+|-+||++
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlala---P~~p----~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALA---PTNP----QILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcC---CCCH----HHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 3457899999999999999997 2354 57889999998889999999999999986
No 360
>PRK10941 hypothetical protein; Provisional
Probab=22.25 E-value=4.6e+02 Score=27.90 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=60.4
Q ss_pred cccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 546 HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 546 e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
...|+++....+..|-.+|.+.++.+.|.++.+..+.+. +|.+.+. .--|-+|..+|.+..|.+=++++.+..
T Consensus 173 ~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~---P~dp~e~---RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 173 EADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFD---PEDPYEI---RDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC---CCCHHHH---HHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 467889999999999999999999999999999999874 4433333 345779999999999999888887655
No 361
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=21.66 E-value=1.1e+03 Score=26.05 Aligned_cols=217 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhcCChhHH--------HHHHHHH-HHHHHhhCChhh--HHHH
Q 005266 433 SMIEMLRGQYAHSVGC---------YSEAAFHYVEAAKITESKSMQ--------AMCHAYA-AVSYFCIGDAES--SSQA 492 (705)
Q Consensus 433 a~~~~llG~~~~~~g~---------~~eA~~~f~~Al~l~~~~~g~--------a~a~~nl-alv~l~~gd~d~--~~~A 492 (705)
+.+.+.+|..+...|- +++|..+|+.|...+.--... ++..-.+ .+..++.....+ +.+|
T Consensus 114 a~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~~~Dl~~~~l~~L~~lmLAQAQEc~~~Ka 193 (361)
T cd09239 114 ASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYPQVYGAVDMSSQLLSFNYSLMLAQAQECLLEKS 193 (361)
T ss_pred HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhccccccCCc----cchhhhHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Q 005266 493 IDLIGPVYQMKDT----INGVREEASLHFAYGLLLMRQQDFQE--ARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA 566 (705)
Q Consensus 493 Leli~~~~~~~~~----~~g~~~qA~al~~lG~~~~~~g~~~e--A~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~ 566 (705)
+. +...+ +... ++.-+|..+...+.....+. -...+...-.-. -..-.....|.+....|.....
T Consensus 194 i~------d~~k~sliAKLA~--q~~~~Y~~a~~~l~~~~~~~~~~~~~i~~~W~~~-v~~K~~~f~A~A~y~~a~~~~~ 264 (361)
T cd09239 194 LL------DNRKSHITAKVSA--QVVEYYKEALRALENWESNSKIILGKIQKEWRKL-VQMKIAYYASIAHLHMGKQSEE 264 (361)
T ss_pred HH------hCCchHHHHHHHH--HHHHHHHHHHHHHhcccccccccccccCHHHHHH-HHHHHHHHHHHHHHHHHHHhHH
Q ss_pred CCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhh
Q 005266 567 LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHHIELISK 646 (705)
Q Consensus 567 lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~~~~h~~l~~~ 646 (705)
.++++++...++.|....++.... .+..++...=.+.........+.-.++-..=...++|.
T Consensus 265 ~~k~Ge~Ia~L~~A~~~l~~a~~~-------------~~~~~~~~~~~~~~~~l~~~i~~~l~~aekDNd~IYhe----- 326 (361)
T cd09239 265 QQKMGERVAYYQLANDKLEEAIKN-------------AKGQPDTVNLQEALSFTMDVIGGKRNSAKKENDFIYHE----- 326 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HhCCCcchhHHHHHHHHHHHHHHHHHHHhcccCceeec-----
Q ss_pred hccchhccchhh-HHHhhhcccccccccCCcccC
Q 005266 647 VKLEVQQFHELD-IKRAMANQSMSVNLDIPESIG 679 (705)
Q Consensus 647 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 679 (705)
.|++..+++ ++.+........+-+.||-+|
T Consensus 327 ---~VP~~~~L~~i~~~~~vk~~p~~~~~~~~~g 357 (361)
T cd09239 327 ---AVPKLDTLQAVKGANLVKGIPFSPTDPEVCG 357 (361)
T ss_pred ---CCCChhhcCCCcCccccccCCCCcccccccC
No 362
>PF12854 PPR_1: PPR repeat
Probab=21.21 E-value=1.9e+02 Score=20.28 Aligned_cols=26 Identities=8% Similarity=-0.178 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAK 538 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~e 538 (705)
...|..+-..+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45777777788999999999999874
No 363
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=21.11 E-value=7.2e+02 Score=27.26 Aligned_cols=120 Identities=19% Similarity=0.124 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHhcC---------HHHHHHHHHHHHHHHHh------cccCHHHHHHHHHHHHHHHHHCC-------
Q 005266 511 EEASLHFAYGLLLMRQQD---------FQEARNRLAKGLQIAHN------HMGNLQLVSQYLTILGNLALALH------- 568 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~---------~~eA~~~L~eAL~la~~------e~gn~~l~a~aL~~LG~i~~~lg------- 568 (705)
|++.++|++|.++...+. ..+|..+|++|-.+.+- ......+...++..|..+.+...
T Consensus 105 E~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~~~~~~s~Dl~~~~l~~l~~l~lAqAQe~~~~k 184 (377)
T PF03097_consen 105 EKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLRENFKDSPSPDLSPEVLSALSNLMLAQAQECFYEK 184 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHHSSS-SSGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999888877554 33577777777665421 01111233333433333333322
Q ss_pred -------------ChHHHHHHHHHHHHHHHHcCCh----------------hhHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 005266 569 -------------DTVQAREILRSSLTLAKKLYDI----------------PTQIWALSVLTALYQQLGDRGNEMENDEY 619 (705)
Q Consensus 569 -------------~~~qA~~~~~~Al~LArk~gD~----------------~~q~~al~~L~~l~~~~Gd~~~A~e~~~~ 619 (705)
-..++.+.|+.|....+...-. +..+.+....+......+++|+|..++..
T Consensus 185 a~~~~~~~~liAKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~aia~L~~ 264 (377)
T PF03097_consen 185 AIADKKKPSLIAKLAAQASELYDEAHEALQSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAEEAKKYGEAIARLRR 264 (377)
T ss_dssp HHHTTG-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 2345677888888777765321 11233444556667778888999988888
Q ss_pred HHHHHHHHHHH
Q 005266 620 RRKKLDELQKR 630 (705)
Q Consensus 620 ~~~~~~~l~~~ 630 (705)
+....+...+.
T Consensus 265 A~~~l~~a~~~ 275 (377)
T PF03097_consen 265 AEEALKEASKL 275 (377)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 87777765543
No 364
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=20.97 E-value=2.3e+02 Score=23.15 Aligned_cols=33 Identities=9% Similarity=0.045 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 544 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~ 544 (705)
+|..+...|+-.-..|++++|..++.+|+....
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 466777888888899999999999999987763
No 365
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=20.45 E-value=1.6e+03 Score=27.45 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=40.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH-HHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHH
Q 005266 440 GQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS-YFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFA 518 (705)
Q Consensus 440 G~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv-~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~ 518 (705)
+-+.-.-|+|+||+..|..|=+.+ +|+- +...||+ -+.+.+++.-+..-+| -| +-.++..
T Consensus 741 aei~~~~g~feeaek~yld~drrD------------LAielr~klgDw---frV~qL~r~g~~d~dD-~~---~e~A~r~ 801 (1189)
T KOG2041|consen 741 AEISAFYGEFEEAEKLYLDADRRD------------LAIELRKKLGDW---FRVYQLIRNGGSDDDD-EG---KEDAFRN 801 (1189)
T ss_pred HhHhhhhcchhHhhhhhhccchhh------------hhHHHHHhhhhH---HHHHHHHHccCCCcch-HH---HHHHHHH
Confidence 445556799999999997643321 1111 1113442 2222333321111111 11 2346666
Q ss_pred HHHHHHHhcCHHHHHHHHHHH
Q 005266 519 YGLLLMRQQDFQEARNRLAKG 539 (705)
Q Consensus 519 lG~~~~~~g~~~eA~~~L~eA 539 (705)
+|-.+...-.+++|.+++.++
T Consensus 802 ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 802 IGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 666666666677777666644
No 366
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=20.33 E-value=3.2e+02 Score=29.31 Aligned_cols=146 Identities=15% Similarity=0.200 Sum_probs=90.7
Q ss_pred hhHHHHHHHhHHHhhhcccHhHHhHHHHHHhc-cCC---------CCChHHHHHHHHHHHHHHHHhhcchHHHHH-HHHH
Q 005266 2 EAVAEGLWGLADYHENKGEIGKAVKCLEAICQ-SHV---------SFLPIIEVKTRLRISTLLLKHTHNVNHAKS-HLER 70 (705)
Q Consensus 2 ~~~~~~L~~lAe~~~~~~~i~~ai~CLea~~~-~~~---------~~~p~~EA~~rLrla~iL~e~T~N~~~A~t-hLek 70 (705)
|.++..||.=-+.-+-..++.++|.=|..++. .+. .|.|--. +-.=++....++.-++....- -+++
T Consensus 44 e~l~~llWe~~~~~~Ar~nLR~~l~~lRk~l~~~~~il~t~~~~~~L~~~~~--~~iD~~~F~~~~~a~~~~~~~~~~~~ 121 (280)
T COG3629 44 EKLAGLLWEDSDPSRARANLRTTLHNLRKLLGDGDVILATEGPGVTLNPGAD--ITIDAGRFEAEARAGLKARAGLRFEQ 121 (280)
T ss_pred HHHHHhccCCCChhHHHHHHHHHHHHHHHhcCCcceeeecCCCceEecCccc--eeecHHHHHHhHhcccchhhhHHHHH
Confidence 46777777666655555688899988888886 111 1111100 001122222333322111111 2444
Q ss_pred HHHHhhcC----------------CchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHH
Q 005266 71 SQLLLKAI----------------PSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNS 134 (705)
Q Consensus 71 a~~l~~~i----------------~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~ 134 (705)
+-.++.+. ..+++++..++..+++.|..-|..+.....+..-++.++ |....| .
T Consensus 122 ~~~~~~~g~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-----~~E~~~-----~ 191 (280)
T COG3629 122 AGELLSEGPVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDP-----YDEPAY-----L 191 (280)
T ss_pred HHHHhhcCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-----cchHHH-----H
Confidence 44333311 236689999999999999999988888888888777776 334555 3
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHH
Q 005266 135 QLANAFIIEGDYQSSISALQSGYVC 159 (705)
Q Consensus 135 ~lA~~~~~~~d~~~A~~~L~~~~~~ 159 (705)
++-.+|...|+...|+..|+.+...
T Consensus 192 ~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 192 RLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3456689999999999999998873
Done!