Query 005266
Match_columns 705
No_of_seqs 184 out of 196
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 20:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 99.8 6.5E-18 2.2E-22 181.0 36.7 383 8-609 2-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 99.8 4.2E-17 1.4E-21 174.7 39.6 359 51-623 6-368 (388)
3 3sf4_A G-protein-signaling mod 99.8 2.9E-17 9.9E-22 174.7 37.7 353 83-614 6-367 (406)
4 2xpi_A Anaphase-promoting comp 99.8 3.2E-16 1.1E-20 176.8 38.3 478 6-623 85-579 (597)
5 4a1s_A PINS, partner of inscut 99.8 5E-16 1.7E-20 166.8 37.7 235 345-636 127-385 (411)
6 3ro2_A PINS homolog, G-protein 99.8 1.3E-15 4.6E-20 156.0 36.9 227 345-628 84-337 (338)
7 2gw1_A Mitochondrial precursor 99.8 7E-16 2.4E-20 169.6 36.9 385 3-625 4-480 (514)
8 3sf4_A G-protein-signaling mod 99.8 1.7E-15 6E-20 160.9 36.0 231 344-631 87-344 (406)
9 3fp2_A TPR repeat-containing p 99.8 3.1E-15 1.1E-19 165.9 37.8 422 3-626 23-494 (537)
10 3ieg_A DNAJ homolog subfamily 99.7 2.6E-14 8.8E-19 148.6 39.0 100 515-623 236-335 (359)
11 3ulq_A Response regulator aspa 99.7 2.3E-14 7.8E-19 154.0 38.2 183 433-628 184-373 (383)
12 2y4t_A DNAJ homolog subfamily 99.7 6.3E-14 2.2E-18 152.0 40.5 385 4-615 25-446 (450)
13 2xpi_A Anaphase-promoting comp 99.7 2.2E-13 7.6E-18 153.5 46.4 442 45-623 85-545 (597)
14 2y4t_A DNAJ homolog subfamily 99.7 5.1E-14 1.7E-18 152.8 37.9 349 20-623 7-358 (450)
15 2gw1_A Mitochondrial precursor 99.7 5E-14 1.7E-18 154.8 36.5 423 41-623 3-444 (514)
16 3ro2_A PINS homolog, G-protein 99.7 3.6E-14 1.2E-18 145.2 31.0 251 344-629 5-298 (338)
17 3ulq_A Response regulator aspa 99.7 3.7E-14 1.3E-18 152.3 31.8 193 433-632 103-302 (383)
18 4a1s_A PINS, partner of inscut 99.7 4E-14 1.4E-18 152.0 31.8 261 342-628 46-337 (411)
19 3fp2_A TPR repeat-containing p 99.7 1.6E-13 5.3E-18 152.2 37.0 394 85-623 24-457 (537)
20 3q15_A PSP28, response regulat 99.7 3.3E-13 1.1E-17 145.0 37.6 228 344-629 101-371 (378)
21 4g1t_A Interferon-induced prot 99.6 1E-13 3.5E-18 151.8 30.6 393 22-626 28-462 (472)
22 3ieg_A DNAJ homolog subfamily 99.6 2.7E-12 9.1E-17 133.3 39.9 324 5-543 3-336 (359)
23 1fch_A Peroxisomal targeting s 99.6 7.7E-14 2.6E-18 146.9 24.9 322 54-589 34-365 (368)
24 3gw4_A Uncharacterized protein 99.6 5.7E-14 1.9E-18 135.3 20.5 172 431-609 24-202 (203)
25 3gw4_A Uncharacterized protein 99.6 8.9E-14 3.1E-18 133.9 21.3 182 443-635 2-188 (203)
26 3q15_A PSP28, response regulat 99.6 1.5E-13 5.2E-18 147.6 24.6 186 433-626 101-293 (378)
27 2ifu_A Gamma-SNAP; membrane fu 99.6 3E-13 1E-17 141.9 25.9 175 438-621 41-222 (307)
28 3nf1_A KLC 1, kinesin light ch 99.6 5.4E-13 1.8E-17 136.2 26.0 231 342-624 25-308 (311)
29 2xm6_A Protein corresponding t 99.6 6.6E-11 2.3E-15 131.8 43.2 400 20-605 22-451 (490)
30 3edt_B KLC 2, kinesin light ch 99.5 5.3E-13 1.8E-17 133.8 23.2 183 435-622 45-280 (283)
31 3hym_B Cell division cycle pro 99.5 3.5E-12 1.2E-16 131.3 29.7 154 438-611 164-322 (330)
32 2xm6_A Protein corresponding t 99.5 9.8E-12 3.3E-16 138.5 35.1 373 65-624 27-433 (490)
33 1fch_A Peroxisomal targeting s 99.5 6.8E-13 2.3E-17 139.6 23.0 166 438-625 187-361 (368)
34 3hym_B Cell division cycle pro 99.5 1.2E-11 4E-16 127.3 29.1 200 346-623 92-299 (330)
35 4eqf_A PEX5-related protein; a 99.5 4.5E-12 1.5E-16 134.1 24.6 283 87-585 66-358 (365)
36 1hz4_A MALT regulatory protein 99.5 5.6E-10 1.9E-14 118.6 40.8 317 83-594 11-333 (373)
37 1qqe_A Vesicular transport pro 99.5 1.3E-12 4.6E-17 136.0 19.9 181 438-626 42-231 (292)
38 3cv0_A Peroxisome targeting si 99.5 4.1E-11 1.4E-15 123.1 30.8 291 86-590 21-322 (327)
39 3ro3_A PINS homolog, G-protein 99.5 1.8E-12 6.1E-17 118.3 17.0 155 432-627 8-162 (164)
40 3nf1_A KLC 1, kinesin light ch 99.5 8.5E-12 2.9E-16 127.3 23.7 190 431-626 25-227 (311)
41 3ro3_A PINS homolog, G-protein 99.4 4.9E-12 1.7E-16 115.4 19.2 115 513-628 9-123 (164)
42 2qfc_A PLCR protein; TPR, HTH, 99.4 1.9E-11 6.5E-16 126.8 24.6 187 437-630 79-273 (293)
43 1hz4_A MALT regulatory protein 99.4 9.9E-12 3.4E-16 132.2 22.9 184 433-625 14-205 (373)
44 2pl2_A Hypothetical conserved 99.4 5.1E-12 1.7E-16 125.7 18.2 190 345-619 6-210 (217)
45 3u3w_A Transcriptional activat 99.4 3.4E-11 1.2E-15 124.9 24.1 184 439-629 81-272 (293)
46 2ifu_A Gamma-SNAP; membrane fu 99.4 1.8E-11 6E-16 128.4 19.8 174 444-626 2-187 (307)
47 3u3w_A Transcriptional activat 99.4 2.1E-11 7E-16 126.6 20.0 150 438-594 120-277 (293)
48 3cv0_A Peroxisome targeting si 99.4 7.1E-11 2.4E-15 121.3 23.5 215 346-625 91-317 (327)
49 3vtx_A MAMA; tetratricopeptide 99.4 4.5E-11 1.5E-15 114.1 20.3 164 433-625 5-172 (184)
50 4gyw_A UDP-N-acetylglucosamine 99.4 1.6E-11 5.3E-16 144.9 20.6 169 429-626 5-177 (723)
51 4g1t_A Interferon-induced prot 99.3 4.6E-10 1.6E-14 122.7 30.2 356 6-543 95-460 (472)
52 4eqf_A PEX5-related protein; a 99.3 1.4E-10 4.8E-15 122.5 25.2 235 347-626 68-313 (365)
53 2pl2_A Hypothetical conserved 99.3 3.6E-11 1.2E-15 119.5 19.0 162 432-623 4-180 (217)
54 3edt_B KLC 2, kinesin light ch 99.3 4.2E-11 1.4E-15 119.8 19.3 179 443-626 11-201 (283)
55 3uq3_A Heat shock protein STI1 99.3 3.9E-10 1.3E-14 111.6 25.9 219 343-626 4-239 (258)
56 2qfc_A PLCR protein; TPR, HTH, 99.3 2.9E-10 9.8E-15 117.9 24.8 149 437-592 119-275 (293)
57 3u4t_A TPR repeat-containing p 99.3 2.1E-10 7.2E-15 115.4 21.5 235 346-623 5-250 (272)
58 1qqe_A Vesicular transport pro 99.3 1.2E-10 4.2E-15 121.0 20.1 152 448-624 32-188 (292)
59 3u4t_A TPR repeat-containing p 99.3 1.2E-09 4E-14 109.9 25.2 185 344-607 74-268 (272)
60 4i17_A Hypothetical protein; T 99.3 2.5E-10 8.5E-15 112.9 19.4 154 432-610 6-169 (228)
61 2q7f_A YRRB protein; TPR, prot 99.2 2.7E-10 9.1E-15 112.2 19.0 198 342-623 21-222 (243)
62 2ho1_A Type 4 fimbrial biogene 99.2 1.9E-09 6.6E-14 107.2 24.8 204 342-623 35-238 (252)
63 3vtx_A MAMA; tetratricopeptide 99.2 5.8E-10 2E-14 106.2 19.7 164 343-584 4-171 (184)
64 4abn_A Tetratricopeptide repea 99.2 2.6E-10 8.8E-15 127.5 19.5 196 343-620 101-318 (474)
65 4b4t_Q 26S proteasome regulato 99.2 2.3E-09 7.8E-14 115.8 24.5 183 436-626 58-248 (434)
66 2vq2_A PILW, putative fimbrial 99.2 6.7E-09 2.3E-13 100.4 24.6 199 342-621 6-209 (225)
67 3qky_A Outer membrane assembly 99.2 1.3E-09 4.5E-14 110.3 19.2 175 430-621 12-222 (261)
68 4gyw_A UDP-N-acetylglucosamine 99.1 8.3E-10 2.8E-14 130.1 20.1 168 342-587 7-178 (723)
69 2vq2_A PILW, putative fimbrial 99.1 4.6E-09 1.6E-13 101.6 21.4 168 430-624 5-177 (225)
70 1ouv_A Conserved hypothetical 99.1 1.3E-08 4.4E-13 103.4 25.2 221 343-624 5-252 (273)
71 3uq3_A Heat shock protein STI1 99.1 3.5E-09 1.2E-13 104.7 20.3 175 432-623 4-202 (258)
72 3qky_A Outer membrane assembly 99.1 1.9E-09 6.6E-14 109.1 18.0 206 344-614 15-252 (261)
73 3as5_A MAMA; tetratricopeptide 99.1 3.3E-09 1.1E-13 99.0 18.3 164 432-624 7-174 (186)
74 2ho1_A Type 4 fimbrial biogene 99.1 5.1E-09 1.8E-13 104.1 19.0 163 433-622 37-203 (252)
75 4i17_A Hypothetical protein; T 99.1 6.2E-09 2.1E-13 102.7 19.4 159 344-570 7-169 (228)
76 4abn_A Tetratricopeptide repea 99.1 2.1E-09 7.3E-14 120.0 16.9 169 429-624 98-288 (474)
77 4b4t_Q 26S proteasome regulato 99.0 5.4E-09 1.8E-13 112.9 18.8 181 438-626 9-207 (434)
78 2h6f_A Protein farnesyltransfe 99.0 9.7E-09 3.3E-13 112.0 20.9 217 342-608 95-323 (382)
79 3e4b_A ALGK; tetratricopeptide 99.0 4E-08 1.4E-12 109.0 26.1 145 430-606 245-402 (452)
80 4gcn_A Protein STI-1; structur 99.0 9.9E-09 3.4E-13 93.4 16.2 107 431-583 6-112 (127)
81 2ooe_A Cleavage stimulation fa 99.0 4.9E-06 1.7E-10 93.2 41.0 172 430-625 318-494 (530)
82 2yhc_A BAMD, UPF0169 lipoprote 99.0 3.9E-08 1.3E-12 97.8 21.1 172 433-619 4-209 (225)
83 2q7f_A YRRB protein; TPR, prot 99.0 6.8E-09 2.3E-13 102.0 15.2 164 431-623 21-188 (243)
84 2ooe_A Cleavage stimulation fa 98.9 7.1E-06 2.4E-10 91.9 40.1 167 428-622 267-453 (530)
85 1ouv_A Conserved hypothetical 98.9 6.4E-08 2.2E-12 98.2 19.9 161 426-623 31-215 (273)
86 2h6f_A Protein farnesyltransfe 98.9 2.2E-08 7.7E-13 109.2 17.5 149 431-608 129-288 (382)
87 1xnf_A Lipoprotein NLPI; TPR, 98.9 1.3E-07 4.4E-12 94.6 21.5 166 431-623 75-244 (275)
88 3rjv_A Putative SEL1 repeat pr 98.9 6E-08 2E-12 96.0 18.6 171 427-623 12-197 (212)
89 3mkr_A Coatomer subunit epsilo 98.9 3.3E-07 1.1E-11 95.5 24.8 252 55-543 9-265 (291)
90 3urz_A Uncharacterized protein 98.9 8.4E-08 2.9E-12 94.4 18.2 161 434-624 5-187 (208)
91 4ga2_A E3 SUMO-protein ligase 98.8 6.9E-09 2.4E-13 97.2 9.4 142 439-609 3-149 (150)
92 3qou_A Protein YBBN; thioredox 98.8 9.1E-08 3.1E-12 99.3 18.9 170 430-622 114-283 (287)
93 1xnf_A Lipoprotein NLPI; TPR, 98.8 7.5E-07 2.6E-11 89.0 23.1 215 343-617 42-269 (275)
94 3as5_A MAMA; tetratricopeptide 98.8 4.4E-07 1.5E-11 84.3 19.4 169 3-201 6-174 (186)
95 2yhc_A BAMD, UPF0169 lipoprote 98.8 5.7E-07 2E-11 89.3 21.3 181 345-581 5-211 (225)
96 3e4b_A ALGK; tetratricopeptide 98.8 1.1E-07 3.8E-12 105.4 17.7 159 431-622 211-386 (452)
97 3upv_A Heat shock protein STI1 98.8 2.4E-07 8.2E-12 82.6 16.0 121 432-605 3-123 (126)
98 4ga2_A E3 SUMO-protein ligase 98.7 8.3E-08 2.8E-12 89.7 13.1 141 11-178 3-144 (150)
99 3gyz_A Chaperone protein IPGC; 98.7 1.7E-07 5.7E-12 88.7 15.3 105 427-584 30-134 (151)
100 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.1E-08 2.4E-12 93.5 13.0 133 432-584 5-151 (213)
101 2fo7_A Synthetic consensus TPR 98.7 3.3E-07 1.1E-11 80.1 16.2 127 434-583 2-132 (136)
102 3n71_A Histone lysine methyltr 98.7 1.7E-07 5.8E-12 105.6 17.7 138 442-584 318-465 (490)
103 2pzi_A Probable serine/threoni 98.7 5.6E-08 1.9E-12 113.6 14.3 146 437-612 437-586 (681)
104 1a17_A Serine/threonine protei 98.7 4.3E-07 1.5E-11 83.7 17.3 137 432-589 12-152 (166)
105 4gcn_A Protein STI-1; structur 98.7 2E-07 7E-12 84.6 14.4 104 512-622 7-111 (127)
106 3mkr_A Coatomer subunit epsilo 98.7 7.9E-07 2.7E-11 92.6 20.1 186 345-583 66-264 (291)
107 2vsy_A XCC0866; transferase, g 98.7 2.3E-07 7.7E-12 105.3 16.9 132 429-583 19-157 (568)
108 3urz_A Uncharacterized protein 98.7 6.2E-07 2.1E-11 88.1 17.7 176 346-584 6-187 (208)
109 3qou_A Protein YBBN; thioredox 98.7 3.2E-07 1.1E-11 95.2 16.0 129 434-583 152-284 (287)
110 2r5s_A Uncharacterized protein 98.6 3.2E-07 1.1E-11 87.4 14.3 163 436-622 9-172 (176)
111 4gco_A Protein STI-1; structur 98.6 3.7E-07 1.3E-11 82.9 14.0 99 429-543 9-111 (126)
112 3sz7_A HSC70 cochaperone (SGT) 98.6 4.6E-07 1.6E-11 85.0 14.4 117 431-604 9-125 (164)
113 2pzi_A Probable serine/threoni 98.6 1.9E-07 6.6E-12 109.1 14.3 159 431-622 392-562 (681)
114 1p5q_A FKBP52, FK506-binding p 98.6 5.5E-07 1.9E-11 95.8 16.3 137 429-585 143-296 (336)
115 2r5s_A Uncharacterized protein 98.6 5.6E-07 1.9E-11 85.7 14.5 131 431-583 38-173 (176)
116 2hr2_A Hypothetical protein; a 98.6 7.2E-07 2.4E-11 85.5 14.2 106 431-543 9-132 (159)
117 1elr_A TPR2A-domain of HOP; HO 98.6 1.4E-06 4.7E-11 76.3 15.1 124 432-608 3-126 (131)
118 3n71_A Histone lysine methyltr 98.6 1.6E-06 5.5E-11 97.6 19.2 143 475-622 314-463 (490)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.5 9.9E-07 3.4E-11 85.4 14.4 137 469-624 5-151 (213)
120 2vsy_A XCC0866; transferase, g 98.5 1.1E-06 3.6E-11 99.7 16.4 97 431-543 55-158 (568)
121 4f3v_A ESX-1 secretion system 98.5 3.5E-06 1.2E-10 88.1 18.0 165 440-624 54-238 (282)
122 2vyi_A SGTA protein; chaperone 98.5 4.8E-06 1.6E-10 72.6 16.4 122 430-610 9-130 (131)
123 2ond_A Cleavage stimulation fa 98.5 1.3E-05 4.3E-10 83.4 21.6 172 429-624 95-271 (308)
124 3rjv_A Putative SEL1 repeat pr 98.5 4.5E-06 1.6E-10 82.3 17.2 173 333-583 5-197 (212)
125 2xcb_A PCRH, regulatory protei 98.5 5.1E-06 1.7E-10 76.1 16.3 99 429-543 14-116 (142)
126 4gco_A Protein STI-1; structur 98.4 2.5E-06 8.7E-11 77.3 13.6 114 43-178 12-125 (126)
127 2vgx_A Chaperone SYCD; alterna 98.4 3.9E-06 1.3E-10 78.2 15.2 99 429-543 17-119 (148)
128 3q49_B STIP1 homology and U bo 98.4 3E-06 1E-10 75.9 13.7 103 432-587 8-110 (137)
129 2hr2_A Hypothetical protein; a 98.4 5.5E-06 1.9E-10 79.3 15.6 113 512-625 10-133 (159)
130 2ond_A Cleavage stimulation fa 98.4 8.6E-06 2.9E-10 84.7 18.6 166 428-622 45-231 (308)
131 2lni_A Stress-induced-phosphop 98.4 4.2E-06 1.4E-10 73.7 13.9 116 431-569 14-133 (133)
132 1a17_A Serine/threonine protei 98.4 8.6E-06 2.9E-10 74.7 16.4 141 41-204 10-150 (166)
133 2fbn_A 70 kDa peptidylprolyl i 98.4 3E-06 1E-10 81.8 13.3 36 430-465 35-70 (198)
134 3rkv_A Putative peptidylprolyl 98.4 3.5E-06 1.2E-10 78.7 12.9 99 432-543 10-127 (162)
135 1elr_A TPR2A-domain of HOP; HO 98.4 8.3E-06 2.8E-10 71.2 14.7 105 512-623 3-108 (131)
136 2fo7_A Synthetic consensus TPR 98.4 1.2E-05 4.1E-10 69.9 15.7 126 47-197 4-129 (136)
137 3rkv_A Putative peptidylprolyl 98.4 4.1E-06 1.4E-10 78.2 13.4 105 512-623 10-126 (162)
138 2c2l_A CHIP, carboxy terminus 98.4 1.3E-06 4.3E-11 90.4 10.7 95 433-543 4-102 (281)
139 2vgx_A Chaperone SYCD; alterna 98.3 2.2E-06 7.5E-11 80.0 11.0 112 452-586 6-121 (148)
140 1xi4_A Clathrin heavy chain; a 98.3 0.0024 8.1E-08 79.0 39.9 185 432-651 1133-1345(1630)
141 1na0_A Designed protein CTPR3; 98.3 1.4E-05 4.7E-10 69.0 15.2 117 433-608 9-125 (125)
142 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.7E-06 1.3E-10 93.4 14.2 133 429-581 264-413 (457)
143 2xev_A YBGF; tetratricopeptide 98.3 1.5E-05 5E-10 70.5 15.0 99 435-543 4-106 (129)
144 3upv_A Heat shock protein STI1 98.3 1.4E-05 4.7E-10 71.1 14.5 118 43-178 3-122 (126)
145 2fbn_A 70 kDa peptidylprolyl i 98.3 1.6E-06 5.4E-11 83.9 8.9 164 432-614 3-176 (198)
146 3qww_A SET and MYND domain-con 98.3 9.7E-06 3.3E-10 89.9 15.6 105 445-587 310-415 (433)
147 3sz7_A HSC70 cochaperone (SGT) 98.3 8.2E-06 2.8E-10 76.3 12.7 100 512-624 10-109 (164)
148 3gyz_A Chaperone protein IPGC; 98.2 8E-06 2.7E-10 77.1 12.5 132 53-201 3-134 (151)
149 2vyi_A SGTA protein; chaperone 98.2 3E-05 1E-09 67.4 15.3 119 41-181 9-127 (131)
150 3qwp_A SET and MYND domain-con 98.2 1.6E-05 5.6E-10 87.9 16.3 126 443-606 297-425 (429)
151 2e2e_A Formate-dependent nitri 98.2 7.2E-06 2.4E-10 77.3 11.4 121 444-587 21-148 (177)
152 2dba_A Smooth muscle cell asso 98.2 1.8E-05 6.2E-10 71.0 13.5 100 431-543 26-129 (148)
153 1na0_A Designed protein CTPR3; 98.2 3E-05 1E-09 66.8 14.4 120 39-180 4-123 (125)
154 1hxi_A PEX5, peroxisome target 98.2 1.1E-05 3.8E-10 72.4 11.3 92 436-543 20-115 (121)
155 2lni_A Stress-induced-phosphop 98.2 2E-05 7E-10 69.2 12.5 120 40-181 12-131 (133)
156 2xev_A YBGF; tetratricopeptide 98.1 1.6E-05 5.4E-10 70.3 11.6 102 515-623 4-105 (129)
157 1elw_A TPR1-domain of HOP; HOP 98.1 3.8E-05 1.3E-09 65.6 13.7 112 44-177 4-115 (118)
158 3q49_B STIP1 homology and U bo 98.1 2.6E-05 8.9E-10 69.6 12.9 101 513-626 9-109 (137)
159 3qww_A SET and MYND domain-con 98.1 1.8E-05 6.1E-10 87.7 14.1 102 525-626 310-414 (433)
160 3ma5_A Tetratricopeptide repea 98.1 1.9E-05 6.4E-10 68.2 11.2 87 513-610 7-93 (100)
161 2l6j_A TPR repeat-containing p 98.1 6.2E-06 2.1E-10 70.8 7.9 97 513-616 4-100 (111)
162 1ihg_A Cyclophilin 40; ppiase 98.1 2.3E-05 7.8E-10 84.7 14.0 126 431-576 221-363 (370)
163 2l6j_A TPR repeat-containing p 98.1 7.2E-06 2.5E-10 70.3 8.0 98 432-576 3-100 (111)
164 2if4_A ATFKBP42; FKBP-like, al 98.1 5.5E-06 1.9E-10 88.2 8.6 125 430-590 176-300 (338)
165 2xcb_A PCRH, regulatory protei 98.1 4.4E-05 1.5E-09 69.7 13.1 100 43-160 17-116 (142)
166 1p5q_A FKBP52, FK506-binding p 98.1 6.1E-05 2.1E-09 79.9 16.1 124 43-181 146-277 (336)
167 2kck_A TPR repeat; tetratricop 98.0 1E-05 3.5E-10 68.7 7.9 99 433-582 6-105 (112)
168 2dba_A Smooth muscle cell asso 98.0 4.9E-05 1.7E-09 68.2 12.8 101 513-623 28-128 (148)
169 3k9i_A BH0479 protein; putativ 98.0 1.3E-05 4.5E-10 70.8 8.7 86 445-543 2-91 (117)
170 1elw_A TPR1-domain of HOP; HOP 98.0 4.8E-05 1.6E-09 64.9 12.0 99 512-623 3-101 (118)
171 1xi4_A Clathrin heavy chain; a 98.0 0.0082 2.8E-07 74.3 35.5 115 422-542 1264-1384(1630)
172 2e2e_A Formate-dependent nitri 98.0 2.4E-05 8.2E-10 73.6 10.9 120 57-200 22-144 (177)
173 1wao_1 Serine/threonine protei 98.0 3.4E-06 1.2E-10 94.3 5.5 123 433-578 6-134 (477)
174 1hxi_A PEX5, peroxisome target 98.0 1.9E-05 6.4E-10 70.9 9.4 96 515-623 19-114 (121)
175 3ma5_A Tetratricopeptide repea 97.9 8.8E-05 3E-09 63.9 11.9 85 430-561 4-88 (100)
176 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00012 4.1E-09 81.1 15.4 125 42-181 266-398 (457)
177 4f3v_A ESX-1 secretion system 97.9 0.00012 4.1E-09 76.4 13.7 136 433-583 102-237 (282)
178 2kat_A Uncharacterized protein 97.8 0.00014 4.6E-09 63.6 11.6 75 513-594 19-93 (115)
179 1ihg_A Cyclophilin 40; ppiase 97.8 0.00012 4.1E-09 79.0 13.5 106 512-624 222-337 (370)
180 3qwp_A SET and MYND domain-con 97.8 7.6E-05 2.6E-09 82.5 11.6 104 524-627 298-404 (429)
181 2kck_A TPR repeat; tetratricop 97.8 3.9E-05 1.3E-09 65.0 7.3 98 513-621 6-104 (112)
182 2c2l_A CHIP, carboxy terminus 97.7 0.00016 5.5E-09 74.5 11.1 100 513-625 4-103 (281)
183 1na3_A Designed protein CTPR2; 97.7 0.00038 1.3E-08 57.1 11.4 83 513-608 9-91 (91)
184 2kat_A Uncharacterized protein 97.6 0.0004 1.4E-08 60.5 11.5 87 451-554 3-93 (115)
185 3k9i_A BH0479 protein; putativ 97.6 9E-05 3.1E-09 65.3 6.8 85 58-159 3-90 (117)
186 3ly7_A Transcriptional activat 97.5 0.0027 9.4E-08 68.5 18.4 145 431-596 194-349 (372)
187 1wao_1 Serine/threonine protei 97.5 0.00024 8.1E-09 79.4 9.2 133 46-201 8-140 (477)
188 1klx_A Cysteine rich protein B 97.4 0.0013 4.4E-08 60.4 11.3 110 447-583 9-126 (138)
189 3dra_A Protein farnesyltransfe 97.3 0.021 7.3E-07 60.0 22.0 236 343-626 34-290 (306)
190 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00022 7.6E-09 75.7 6.6 106 512-624 178-294 (338)
191 1b89_A Protein (clathrin heavy 97.3 0.00061 2.1E-08 75.3 10.2 181 431-653 59-274 (449)
192 3mv2_B Coatomer subunit epsilo 97.2 0.026 8.7E-07 59.6 20.3 165 433-609 100-270 (310)
193 1zu2_A Mitochondrial import re 97.1 0.00072 2.5E-08 64.5 7.2 83 444-542 13-120 (158)
194 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0025 8.6E-08 55.5 9.9 71 513-583 5-75 (104)
195 1na3_A Designed protein CTPR2; 97.1 0.0042 1.4E-07 50.6 10.6 80 87-180 10-89 (91)
196 3mv2_B Coatomer subunit epsilo 97.0 0.009 3.1E-07 63.0 15.0 161 7-200 73-240 (310)
197 3txn_A 26S proteasome regulato 96.8 0.11 3.8E-06 56.5 21.7 182 435-621 21-208 (394)
198 1klx_A Cysteine rich protein B 96.7 0.012 4.2E-07 53.6 11.5 88 519-623 31-126 (138)
199 1b89_A Protein (clathrin heavy 96.7 0.014 4.8E-07 64.5 13.8 202 346-621 63-267 (449)
200 2kc7_A BFR218_protein; tetratr 96.6 0.0052 1.8E-07 51.5 7.8 59 438-542 5-64 (99)
201 3ly7_A Transcriptional activat 96.6 0.034 1.1E-06 60.0 15.3 134 477-625 203-341 (372)
202 4b4t_P 26S proteasome regulato 96.5 0.12 4.2E-06 57.0 20.1 141 20-166 111-254 (445)
203 4e6h_A MRNA 3'-END-processing 96.5 1.9 6.6E-05 50.0 34.9 175 431-622 341-532 (679)
204 3q7a_A Farnesyltransferase alp 96.4 0.1 3.5E-06 55.9 17.9 249 343-630 55-338 (349)
205 3u64_A Protein TP_0956; tetrat 96.3 0.06 2.1E-06 56.1 14.9 147 450-622 104-268 (301)
206 2kc7_A BFR218_protein; tetratr 96.3 0.011 3.9E-07 49.3 7.9 61 517-584 4-65 (99)
207 1zu2_A Mitochondrial import re 95.9 0.024 8E-07 54.0 8.6 91 57-168 14-125 (158)
208 3dss_A Geranylgeranyl transfer 95.9 1.4 4.8E-05 46.6 23.2 159 419-606 94-284 (331)
209 3ffl_A Anaphase-promoting comp 95.7 0.11 3.7E-06 49.7 12.4 104 515-618 22-146 (167)
210 3txn_A 26S proteasome regulato 95.6 1 3.5E-05 48.9 21.3 152 20-181 78-233 (394)
211 3dra_A Protein farnesyltransfe 95.4 0.78 2.7E-05 47.9 19.1 161 428-615 62-241 (306)
212 3bee_A Putative YFRE protein; 95.3 0.041 1.4E-06 47.2 7.1 67 513-586 6-75 (93)
213 3u64_A Protein TP_0956; tetrat 95.0 2.5 8.4E-05 44.0 20.9 69 512-586 198-272 (301)
214 4g26_A Pentatricopeptide repea 94.9 0.47 1.6E-05 53.0 16.7 176 441-649 34-222 (501)
215 3bee_A Putative YFRE protein; 94.9 0.11 3.8E-06 44.3 9.0 66 45-117 7-74 (93)
216 2v5f_A Prolyl 4-hydroxylase su 94.9 0.088 3E-06 45.4 8.3 72 552-623 3-75 (104)
217 3ffl_A Anaphase-promoting comp 94.6 0.14 4.9E-06 48.8 9.5 115 59-178 34-165 (167)
218 1pc2_A Mitochondria fission pr 94.5 0.13 4.5E-06 48.4 8.9 93 449-551 14-106 (152)
219 1dce_A Protein (RAB geranylger 94.1 0.34 1.2E-05 55.1 13.2 154 427-609 57-241 (567)
220 1dce_A Protein (RAB geranylger 93.5 1.9 6.6E-05 48.8 17.9 130 423-572 97-244 (567)
221 4b4t_P 26S proteasome regulato 92.9 2.2 7.5E-05 46.9 16.7 80 512-591 176-255 (445)
222 4b4t_S RPN3, 26S proteasome re 92.4 3.7 0.00013 46.0 17.6 141 465-611 226-378 (523)
223 4e6h_A MRNA 3'-END-processing 92.3 20 0.00069 41.4 42.3 169 432-622 377-569 (679)
224 4h7y_A Dual specificity protei 92.1 0.97 3.3E-05 42.5 10.4 100 6-117 14-125 (161)
225 1nzn_A CGI-135 protein, fissio 91.4 1.5 5.3E-05 39.8 10.9 94 449-552 17-110 (126)
226 3dss_A Geranylgeranyl transfer 90.9 18 0.00061 38.1 22.5 155 427-609 58-243 (331)
227 3q7a_A Farnesyltransferase alp 90.8 3.4 0.00012 43.9 14.7 154 428-610 83-258 (349)
228 1pc2_A Mitochondria fission pr 90.2 1.1 3.6E-05 42.2 8.9 66 513-583 32-100 (152)
229 3o48_A Mitochondria fission 1 88.4 1.2 4.2E-05 40.8 7.6 74 471-552 41-114 (134)
230 4b4t_R RPN7, 26S proteasome re 88.3 2.2 7.4E-05 46.6 11.1 108 433-584 131-238 (429)
231 1y8m_A FIS1; mitochondria, unk 88.1 1.4 5E-05 40.8 8.0 73 472-553 41-114 (144)
232 3mkq_A Coatomer beta'-subunit; 87.3 13 0.00045 42.5 17.6 114 431-570 679-799 (814)
233 4b4t_R RPN7, 26S proteasome re 85.7 2.6 8.8E-05 46.0 9.9 59 619-678 329-387 (429)
234 4g26_A Pentatricopeptide repea 85.6 35 0.0012 37.7 19.2 98 433-542 105-204 (501)
235 2uy1_A Cleavage stimulation fa 84.2 33 0.0011 37.7 18.2 165 433-620 213-380 (493)
236 3mkq_B Coatomer subunit alpha; 76.5 31 0.0011 33.0 12.5 84 431-539 32-115 (177)
237 4gns_B Protein CSD3, chitin bi 73.9 18 0.00061 42.4 12.1 58 88-155 339-396 (754)
238 4fhn_B Nucleoporin NUP120; pro 70.5 51 0.0018 40.3 15.7 120 433-578 842-962 (1139)
239 3mkq_A Coatomer beta'-subunit; 69.3 52 0.0018 37.4 14.7 26 514-539 682-707 (814)
240 3kae_A CDC27, possible protein 67.7 47 0.0016 31.9 11.1 95 50-159 38-143 (242)
241 2ijq_A Hypothetical protein; s 66.8 12 0.0004 35.4 6.9 76 515-591 34-112 (161)
242 3t5v_B Nuclear mRNA export pro 66.1 20 0.00068 39.5 9.7 100 61-162 142-253 (455)
243 4b4t_O 26S proteasome regulato 65.8 60 0.0021 34.7 13.4 109 48-158 76-197 (393)
244 1nzn_A CGI-135 protein, fissio 65.4 32 0.0011 31.0 9.3 66 513-583 35-103 (126)
245 2cwy_A Hypothetical protein TT 64.1 17 0.00057 31.1 6.8 72 517-591 5-76 (94)
246 2ff4_A Probable regulatory pro 62.8 66 0.0023 34.2 13.0 98 520-624 122-235 (388)
247 4h7y_A Dual specificity protei 61.6 96 0.0033 29.1 11.8 89 62-171 36-131 (161)
248 4gns_B Protein CSD3, chitin bi 58.8 1.1E+02 0.0036 35.9 14.5 56 135-197 342-397 (754)
249 3t5v_B Nuclear mRNA export pro 58.0 2.2E+02 0.0074 31.2 16.2 100 447-546 140-254 (455)
250 2ff4_A Probable regulatory pro 54.5 53 0.0018 34.9 10.4 147 2-159 53-234 (388)
251 4gq2_M Nucleoporin NUP120; bet 53.4 37 0.0013 40.8 9.8 108 433-567 840-949 (950)
252 3mkq_B Coatomer subunit alpha; 53.3 1.1E+02 0.0039 29.0 11.3 86 513-624 34-119 (177)
253 1y8m_A FIS1; mitochondria, unk 52.6 84 0.0029 29.0 9.8 65 513-583 39-106 (144)
254 3t5x_A PCI domain-containing p 48.4 41 0.0014 32.6 7.5 52 435-486 16-69 (203)
255 2wpv_A GET4, UPF0363 protein Y 47.7 2.5E+02 0.0086 29.0 13.9 44 575-618 114-158 (312)
256 4b4t_S RPN3, 26S proteasome re 47.2 33 0.0011 38.4 7.3 71 512-584 230-300 (523)
257 4ady_A RPN2, 26S proteasome re 45.9 2.2E+02 0.0077 34.1 14.6 168 433-621 413-587 (963)
258 3t5x_A PCI domain-containing p 44.5 48 0.0016 32.1 7.4 56 512-569 13-68 (203)
259 3o48_A Mitochondria fission 1 44.0 1E+02 0.0035 28.0 8.8 65 513-583 40-107 (134)
260 2a9u_A Ubiquitin carboxyl-term 43.5 1.6E+02 0.0053 27.1 10.2 74 555-633 43-117 (144)
261 3ax2_A Mitochondrial import re 42.6 30 0.001 28.2 4.6 30 438-467 22-51 (73)
262 4fhn_B Nucleoporin NUP120; pro 41.7 53 0.0018 40.2 8.8 105 88-196 844-963 (1139)
263 2uy1_A Cleavage stimulation fa 41.7 1.4E+02 0.0047 32.6 11.5 26 45-71 287-312 (493)
264 1ya0_A SMG-7 transcript varian 39.9 2.8E+02 0.0097 30.5 13.6 48 436-486 155-202 (497)
265 3kae_A CDC27, possible protein 38.0 2.8E+02 0.0096 26.6 11.0 70 513-582 62-142 (242)
266 3rau_A Tyrosine-protein phosph 37.4 3.3E+02 0.011 28.6 13.2 37 551-587 249-285 (363)
267 2wpv_A GET4, UPF0363 protein Y 36.8 3.7E+02 0.013 27.7 21.0 162 435-625 35-219 (312)
268 1om2_A Protein (mitochondrial 35.1 40 0.0014 28.9 4.4 30 438-467 25-54 (95)
269 4ady_A RPN2, 26S proteasome re 34.5 2E+02 0.007 34.5 11.8 97 434-540 491-587 (963)
270 1ya0_A SMG-7 transcript varian 30.9 1E+02 0.0035 34.1 8.1 61 515-582 154-214 (497)
271 3spa_A Mtrpol, DNA-directed RN 25.3 3.6E+02 0.012 32.9 11.7 152 26-199 77-229 (1134)
272 1zbp_A Hypothetical protein VP 25.2 5.5E+02 0.019 26.0 11.6 104 429-543 27-130 (273)
273 4b4t_O 26S proteasome regulato 25.2 3.2E+02 0.011 28.8 10.6 100 524-623 87-198 (393)
274 2ynq_A ESSB; membrane protein, 25.0 2E+02 0.0068 26.9 7.6 86 68-174 24-110 (161)
275 3lpz_A GET4 (YOR164C homolog); 22.5 6.7E+02 0.023 26.1 14.4 24 435-458 37-60 (336)
276 2ijq_A Hypothetical protein; s 21.8 3.2E+02 0.011 25.5 8.4 62 438-499 37-108 (161)
277 2o8p_A 14-3-3 domain containin 20.7 6.1E+02 0.021 24.9 11.8 84 513-598 127-216 (227)
278 2cwy_A Hypothetical protein TT 20.4 3.8E+02 0.013 22.4 8.4 69 438-509 6-79 (94)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.84 E-value=6.5e-18 Score=180.99 Aligned_cols=383 Identities=12% Similarity=0.041 Sum_probs=238.2
Q ss_pred HHHhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhh
Q 005266 8 LWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCR 87 (705)
Q Consensus 8 L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~ 87 (705)
++.+|...-..+++..|+.+++.+++..|. ..+ +..-+|.++ ...+++++|...++++....+..+ .
T Consensus 2 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~---~~~--~~~~l~~~~-~~~~~~~~a~~~~~~a~~~~p~~~-------~ 68 (388)
T 1w3b_A 2 PMELAHREYQAGDFEAAERHCMQLWRQEPD---NTG--VLLLLSSIH-FQCRRLDRSAHFSTLAIKQNPLLA-------E 68 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHH--HHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCH-------H
T ss_pred hhhHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHH--HHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCch-------H
Confidence 456677777778888888888887765551 122 334455543 446777888888887777666655 6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCch
Q 005266 88 TFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPD 167 (705)
Q Consensus 88 ~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~ 167 (705)
+++.++.+|...|.+..|...++++++..+ .+.. .++.+|.++...|++..|++.+++.... ++..
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~ 134 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKP-------DFID---GYINLAAALVAAGDMEGAVQAYVSALQY----NPDL 134 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHH---HHHHHHHHHHHHSCSSHHHHHHHHHHHH----CTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCc-------chHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCc
Confidence 777788888888888888778888877765 3232 3455777788888888888888776665 5666
Q ss_pred HHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHH
Q 005266 168 LQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAM 247 (705)
Q Consensus 168 ~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l 247 (705)
..+.+.++.++..+ .++++++..+.++...- |+ ...+++.|-. .
T Consensus 135 ~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~----p~-------------~~~~~~~l~~-~--------------- 178 (388)
T 1w3b_A 135 YCVRSDLGNLLKAL---GRLEEAKACYLKAIETQ----PN-------------FAVAWSNLGC-V--------------- 178 (388)
T ss_dssp THHHHHHHHHHHTT---SCHHHHHHHHHHHHHHC----TT-------------CHHHHHHHHH-H---------------
T ss_pred HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhC----CC-------------CHHHHHHHHH-H---------------
Confidence 66666677666555 55555555544432221 10 0000110000 0
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCccccccccccc
Q 005266 248 KADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVL 327 (705)
Q Consensus 248 ~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 327 (705)
+..+++. .++++..++.+.. .|.
T Consensus 179 ----------------------~~~~g~~--------~~A~~~~~~al~~-~p~-------------------------- 201 (388)
T 1w3b_A 179 ----------------------FNAQGEI--------WLAIHHFEKAVTL-DPN-------------------------- 201 (388)
T ss_dssp ----------------------HHTTTCH--------HHHHHHHHHHHHH-CTT--------------------------
T ss_pred ----------------------HHHcCCH--------HHHHHHHHHHHhc-CCC--------------------------
Confidence 1111111 2222333333332 000
Q ss_pred CCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHH
Q 005266 328 APSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLL 407 (705)
Q Consensus 328 ~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~ 407 (705)
.+-++...+.++...|.+++|.+.+++++.. .
T Consensus 202 ---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------~----------------------- 233 (388)
T 1w3b_A 202 ---------------FLDAYINLGNVLKEARIFDRAVAAYLRALSL----------S----------------------- 233 (388)
T ss_dssp ---------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH----------C-----------------------
T ss_pred ---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------C-----------------------
Confidence 1123344455555666666666665555553 1
Q ss_pred HHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChh
Q 005266 408 MQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 487 (705)
Q Consensus 408 ~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d 487 (705)
|..+.++..+|.++...|++++|...|++++++.++.. .+..+++.++...|+++
T Consensus 234 ----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~ 288 (388)
T 1w3b_A 234 ----------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP---DAYCNLANALKEKGSVA 288 (388)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH---HHHHHHHHHHHHHSCHH
T ss_pred ----------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHH
Confidence 11223334678888888888888888888888876532 34677888888888876
Q ss_pred h----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Q 005266 488 S----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 563 (705)
Q Consensus 488 ~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i 563 (705)
+ +.+++++ .|++ +.+++.+|.++...|++++|...+++++++. . .+ ..++..+|.+
T Consensus 289 ~A~~~~~~al~~------~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p--~~----~~~~~~l~~~ 348 (388)
T 1w3b_A 289 EAEDCYNTALRL------CPTH-------ADSLNNLANIKREQGNIEEAVRLYRKALEVF-P--EF----AAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHH------CTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-T--TC----HHHHHHHHHH
T ss_pred HHHHHHHHHHhh------Cccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C--Cc----HHHHHHHHHH
Confidence 6 5555552 2332 4578888888888888888888888887653 1 12 3477888888
Q ss_pred HHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 005266 564 ALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGD 609 (705)
Q Consensus 564 ~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd 609 (705)
+...|++++|.+.+++++.+ .+....++..||.++...|+
T Consensus 349 ~~~~g~~~~A~~~~~~a~~~------~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 349 LQQQGKLQEALMHYKEAIRI------SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHTT------CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHhh------CCCCHHHHHhHHHHHHHccC
Confidence 88888888888888888764 12345667778888877764
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.83 E-value=4.2e-17 Score=174.70 Aligned_cols=359 Identities=13% Similarity=0.094 Sum_probs=267.5
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhH
Q 005266 51 STLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSC 130 (705)
Q Consensus 51 a~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~ 130 (705)
|..++ ..+++++|..++++++...|..+ .+...++.++...|....+...++++++..+ .+.+
T Consensus 6 a~~~~-~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-------~~~~-- 68 (388)
T 1w3b_A 6 AHREY-QAGDFEAAERHCMQLWRQEPDNT-------GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-------LLAE-- 68 (388)
T ss_dssp HHHHH-HHTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHH--
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------CchH--
Confidence 43333 47899999999999988877776 7888999999999999999999999998776 4444
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCccccc
Q 005266 131 NFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRG 210 (705)
Q Consensus 131 ~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~ 210 (705)
.++.+|.++...|++..|++.+++...+ ++.....++.++.++... .+++++...+.++-.. .|+.
T Consensus 69 -~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~----~p~~-- 134 (388)
T 1w3b_A 69 -AYSNLGNVYKERGQLQEAIEHYRHALRL----KPDFIDGYINLAAALVAA---GDMEGAVQAYVSALQY----NPDL-- 134 (388)
T ss_dssp -HHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHH---SCSSHHHHHHHHHHHH----CTTC--
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHHc----CcchHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHh----CCCc--
Confidence 6678899999999999999999998876 777888899999988877 7777777777665432 1211
Q ss_pred ccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHH
Q 005266 211 QCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAK 290 (705)
Q Consensus 211 ~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~ 290 (705)
. .++.. +.. .+...++. +++.+.
T Consensus 135 -----~------~~~~~-------------------l~~-------------------~~~~~g~~--------~~A~~~ 157 (388)
T 1w3b_A 135 -----Y------CVRSD-------------------LGN-------------------LLKALGRL--------EEAKAC 157 (388)
T ss_dssp -----T------HHHHH-------------------HHH-------------------HHHTTSCH--------HHHHHH
T ss_pred -----H------HHHHH-------------------HHH-------------------HHHHccCH--------HHHHHH
Confidence 0 00000 000 01122222 333344
Q ss_pred HHHHHHhccCCCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 005266 291 LQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSG 370 (705)
Q Consensus 291 lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~a 370 (705)
.++.+.. .| ..+.++...+.++...|++++|.++++++
T Consensus 158 ~~~al~~-~p-----------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 195 (388)
T 1w3b_A 158 YLKAIET-QP-----------------------------------------NFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp HHHHHHH-CT-----------------------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHh-CC-----------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444 10 02345556677788889999999988888
Q ss_pred HHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 005266 371 MQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYS 450 (705)
Q Consensus 371 l~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~ 450 (705)
++. .|.. +.++..+|.++...|+++
T Consensus 196 l~~----------~p~~---------------------------------------------~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 196 VTL----------DPNF---------------------------------------------LDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHH----------CTTC---------------------------------------------HHHHHHHHHHHHTTTCTT
T ss_pred Hhc----------CCCc---------------------------------------------HHHHHHHHHHHHHcCCHH
Confidence 774 1210 112236788999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHh
Q 005266 451 EAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ 526 (705)
Q Consensus 451 eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~ 526 (705)
+|...|.+++.+.++. ..+..++|.++...|++++ +.++++ ..|++ +.+|+.+|.++...
T Consensus 221 ~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~------~~p~~-------~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 221 RAVAAYLRALSLSPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIE------LQPHF-------PDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TCSSC-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCC-------HHHHHHHHHHHHHc
Confidence 9999999999998764 3457889999999999877 556655 23332 45899999999999
Q ss_pred cCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 005266 527 QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ 606 (705)
Q Consensus 527 g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~ 606 (705)
|++++|...+++++++. . .+ ..++..+|.++...|++++|.+.+++++.+. +....+...|+.+|..
T Consensus 285 g~~~~A~~~~~~al~~~-p--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLC-P--TH----ADSLNNLANIKREQGNIEEAVRLYRKALEVF------PEFAAAHSNLASVLQQ 351 (388)
T ss_dssp SCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC------TTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhC-c--cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHH
Confidence 99999999999999884 2 22 3578899999999999999999999998652 2346677889999999
Q ss_pred cCCchHHHHHHHHHHHH
Q 005266 607 LGDRGNEMENDEYRRKK 623 (705)
Q Consensus 607 ~Gd~~~A~e~~~~~~~~ 623 (705)
.|++++|.+.++...+.
T Consensus 352 ~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 99999999988877653
No 3
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.83 E-value=2.9e-17 Score=174.66 Aligned_cols=353 Identities=16% Similarity=0.132 Sum_probs=250.1
Q ss_pred hhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 005266 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (705)
Q Consensus 83 dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~ 162 (705)
+..+.+...++.++...|++..|...++++++..+. +.......++.+|.++...|++..|+..++++..++..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 79 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 79 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 345667788999999999999999999999998763 22333446778999999999999999999999998877
Q ss_pred cCCc--hHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhh
Q 005266 163 ISYP--DLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHV 240 (705)
Q Consensus 163 ~~~~--~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v 240 (705)
.+++ ...+++.++.++..+ .+++++...+.++..+...... . .....+++.
T Consensus 80 ~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~---------~--~~~~~~~~~------------- 132 (406)
T 3sf4_A 80 IGDQLGEAKASGNLGNTLKVL---GNFDEAIVCCQRHLDISRELND---------K--VGEARALYN------------- 132 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTC---------H--HHHHHHHHH-------------
T ss_pred ccccHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhccc---------c--cchHHHHHH-------------
Confidence 6664 466777788777666 7777777666666554421100 0 000000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccc
Q 005266 241 DNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQA 320 (705)
Q Consensus 241 ~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (705)
+ ..+...... . .....
T Consensus 133 ------l-----------------------------------------~~~~~~~g~-~-~~~~~--------------- 148 (406)
T 3sf4_A 133 ------L-----------------------------------------GNVYHAKGK-S-FGCPG--------------- 148 (406)
T ss_dssp ------H-----------------------------------------HHHHHHHHH-T-CC------------------
T ss_pred ------H-----------------------------------------HHHHHHcCC-c-ccccc---------------
Confidence 0 000000000 0 00000
Q ss_pred cccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHH
Q 005266 321 WGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMA 400 (705)
Q Consensus 321 ~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~ 400 (705)
+ +. ...+.+. ....+++|.+++++++..... .+ .
T Consensus 149 ~-~~--------~~~~~~~----------------a~~~~~~A~~~~~~al~~~~~----~~---~-------------- 182 (406)
T 3sf4_A 149 P-QD--------VGEFPEE----------------VRDALQAAVDFYEENLSLVTA----LG---D-------------- 182 (406)
T ss_dssp -------------CCCCHH----------------HHHHHHHHHHHHHHHHHHHHH----TT---C--------------
T ss_pred c-ch--------hhhhhhh----------------HHHHHHHHHHHHHHHHHHHHh----cc---C--------------
Confidence 0 00 0001100 001145566666666554211 11 0
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---ChhHHHHHHHHHH
Q 005266 401 GVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAA 477 (705)
Q Consensus 401 ~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~---~~~g~a~a~~nla 477 (705)
.+..+.++..+|.++...|++++|..+|.+|+++.+ +....+.+..++|
T Consensus 183 ----------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 234 (406)
T 3sf4_A 183 ----------------------------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 234 (406)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 001223445789999999999999999999998854 3566778899999
Q ss_pred HHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHH
Q 005266 478 VSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 553 (705)
Q Consensus 478 lv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~ 553 (705)
.++...|++++ +.+++++.... ++... .+.+++.+|.++...|++++|..++.+++++. ...+++...
T Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~ 306 (406)
T 3sf4_A 235 NAYIFLGEFETASEYYKKTLLLARQL----KDRAV---EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-QELNDRIGE 306 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhC----cCchH---HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH-HhcCCcHHH
Confidence 99999999877 67777765543 22221 37799999999999999999999999999998 568889999
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHH
Q 005266 554 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEM 614 (705)
Q Consensus 554 a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~ 614 (705)
+.++..+|.+|...|++++|.+++++++.++++.++.+....++..|+.++...|++..+.
T Consensus 307 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 307 GRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999985433
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.79 E-value=3.2e-16 Score=176.78 Aligned_cols=478 Identities=11% Similarity=0.050 Sum_probs=291.6
Q ss_pred HHHHHhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhh
Q 005266 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELK 85 (705)
Q Consensus 6 ~~L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK 85 (705)
..+..++..+-..+++..|+.+++.+++..+ .+ .+...+|.+++. .+++++|...|+++... +..+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p--~~----~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~~~~------ 150 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDITG--NP----NDAFWLAQVYCC-TGDYARAKCLLTKEDLY-NRSS------ 150 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--CH----HHHHHHHHHHHH-TTCHHHHHHHHHHTCGG-GTCH------
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhhCC--Cc----hHHHHHHHHHHH-cCcHHHHHHHHHHHhcc-ccch------
Confidence 4466777777888999999999999986444 22 345667877655 78999999999986432 2222
Q ss_pred hhHHHHHHHHHHHcCCChhHHHHHHHHHhhccc---------cccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005266 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSS---------ASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSG 156 (705)
Q Consensus 86 ~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~---------~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~ 156 (705)
.++..++.+|.+.|.+..|...+++....... ...+.+.+. ..++.++.+|...|++..|++.|++.
T Consensus 151 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 151 -ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA---SMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHH---HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhH---HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57888999999999999998777652211100 000111112 25567899999999999999999998
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHH-hhhcCcccccccccchhhhhHHHHHHHHhhhhhhh
Q 005266 157 YVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRV-WESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKN 235 (705)
Q Consensus 157 ~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~-~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~ 235 (705)
... ++....++..++.++... .+...... ..+ ++.+.+ . ..+.....|...++.|..
T Consensus 227 ~~~----~p~~~~~~~~l~~~~~~~-----~~~~~~~~---~~l~~~~~~~-------~---~~~~~~~~~~~~~~~~~~ 284 (597)
T 2xpi_A 227 LMV----DAKCYEAFDQLVSNHLLT-----ADEEWDLV---LKLNYSTYSK-------E---DAAFLRSLYMLKLNKTSH 284 (597)
T ss_dssp HHH----CTTCHHHHHHHHHTTCSC-----HHHHHHHH---HHSCTHHHHG-------G---GHHHHHHHHHTTSCTTTT
T ss_pred HHh----CchhhHHHHHHHHhhccc-----chhHHHHH---HhcCCccccc-------c---hHHHHHHHHHHHHHHHcC
Confidence 876 666777777776644211 11111111 000 000000 0 012223333333333444
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH---HHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCcccccccc
Q 005266 236 AAHHVDNLDAAMKADKQKMQEI---QQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPS 312 (705)
Q Consensus 236 ~~~~v~~l~~~l~~~~qk~~~~---q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~ 312 (705)
.|+ .+.++... +++..+ ...+.. ....+...++. +++++..++.++. .|.+
T Consensus 285 ~g~----~~~A~~~~-~~~~~~~~~~~~~~~--l~~~~~~~g~~--------~~A~~~~~~~~~~-~~~~---------- 338 (597)
T 2xpi_A 285 EDE----LRRAEDYL-SSINGLEKSSDLLLC--KADTLFVRSRF--------IDVLAITTKILEI-DPYN---------- 338 (597)
T ss_dssp HHH----HHHHHHHH-HTSTTGGGCHHHHHH--HHHHHHHTTCH--------HHHHHHHHHHHHH-CTTC----------
T ss_pred cch----HHHHHHHH-HHhhcCCchHHHHHH--HHHHHHHhcCH--------HHHHHHHHHHHHc-Cccc----------
Confidence 333 33332111 111000 011111 11123334433 4444555555544 1110
Q ss_pred ccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccch
Q 005266 313 YFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDL 392 (705)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l 392 (705)
+-++...+.++...|.+++|.+.+++.++. .|. +
T Consensus 339 -------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~----~- 372 (597)
T 2xpi_A 339 -------------------------------LDVYPLHLASLHESGEKNKLYLISNDLVDR----------HPE----K- 372 (597)
T ss_dssp -------------------------------CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTT----S-
T ss_pred -------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----------Ccc----c-
Confidence 011233345556778889999888887753 111 0
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHH
Q 005266 393 QHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 472 (705)
Q Consensus 393 ~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a 472 (705)
...|.....++...- ...-.+...+-.....+....+.+.+|..+...|++++|...|.++++..++. ..+
T Consensus 373 --~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ 443 (597)
T 2xpi_A 373 --AVTWLAVGIYYLCVN----KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT---HLP 443 (597)
T ss_dssp --HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC---SHH
T ss_pred --HHHHHHHHHHHHHhc----cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHH
Confidence 122311111100000 00000001111111233446678899999999999999999999999887653 245
Q ss_pred HHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Q 005266 473 HAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 548 (705)
Q Consensus 473 ~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g 548 (705)
..+++.+|...|++++ +.+++++ .|++ +.+|+.+|.++...|++++|...+++++++......
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYAL------FQYD-------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH------CCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 6778888988999877 4444442 2332 568999999999999999999999999999632122
Q ss_pred CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 549 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 549 n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
++.....++..+|.++...|++++|.+.+++++.+. ++ -..+...|+.+|...|++++|.+.++...+.
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS---TN---DANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 444346799999999999999999999999998773 22 2567788999999999999999988877664
No 5
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=5e-16 Score=166.83 Aligned_cols=235 Identities=17% Similarity=0.167 Sum_probs=194.0
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhh
Q 005266 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (705)
Q Consensus 345 L~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~ 424 (705)
.++...+.++...|++++|.+++++++..... .+ . . .
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~---~--------~-~--------------------------- 163 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQ----LG---D--------R-L--------------------------- 163 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HT---C--------H-H---------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----hh---c--------h-H---------------------------
Confidence 44555567777788899999999999886322 11 0 0 0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhc---CChhHHHHHHHHHHHHHHhhC
Q 005266 425 VEAQEACESMIEMLRGQYAHSVGC-----------------YSEAAFHYVEAAKIT---ESKSMQAMCHAYAAVSYFCIG 484 (705)
Q Consensus 425 ~~a~~~~~a~~~~llG~~~~~~g~-----------------~~eA~~~f~~Al~l~---~~~~g~a~a~~nlalv~l~~g 484 (705)
..+.++..+|.++...|+ +++|..+|.+++++. ++....+.+..++|.++...|
T Consensus 164 ------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 237 (411)
T 4a1s_A 164 ------SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG 237 (411)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 112233467888888888 999999999998875 345667788999999999999
Q ss_pred Chhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 005266 485 DAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 560 (705)
Q Consensus 485 d~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~L 560 (705)
++++ +.+++++.... ++... .+.+++.+|.++...|++++|..++++++.+. ...++....+.++..+
T Consensus 238 ~~~~A~~~~~~al~~~~~~----~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l 309 (411)
T 4a1s_A 238 DFQAAIEHHQERLRIAREF----GDRAA---ERRANSNLGNSHIFLGQFEDAAEHYKRTLALA-VELGEREVEAQSCYSL 309 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHH----TCHHH---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhc----CCcHH---HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Confidence 9877 67777765543 12121 36789999999999999999999999999998 4688999999999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005266 561 GNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYS 636 (705)
Q Consensus 561 G~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~ 636 (705)
|.+|...|++++|.+++++++.++.+.++......++..|+.+|...|++++|.++++.+.++.+++..+...+..
T Consensus 310 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 385 (411)
T 4a1s_A 310 GNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXXXXXXXX 385 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887776653
No 6
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.77 E-value=1.3e-15 Score=155.97 Aligned_cols=227 Identities=18% Similarity=0.139 Sum_probs=180.1
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhh
Q 005266 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (705)
Q Consensus 345 L~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~ 424 (705)
.++...+.++...|++++|.++++++++.... .+ . ...
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~---~---------~~~-------------------------- 121 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRE----LN---D---------KVG-------------------------- 121 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TT---C---------HHH--------------------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH----hc---C---------chH--------------------------
Confidence 34455566777788889999999999886322 11 0 000
Q ss_pred HHhhhhhHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHH
Q 005266 425 VEAQEACESMIEMLRGQYAHSVGC--------------------YSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYF 481 (705)
Q Consensus 425 ~~a~~~~~a~~~~llG~~~~~~g~--------------------~~eA~~~f~~Al~l~~---~~~g~a~a~~nlalv~l 481 (705)
.+.++..+|.++...|+ +++|..+|.+++.+.+ +....+.+..++|.++.
T Consensus 122 -------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (338)
T 3ro2_A 122 -------EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHY 194 (338)
T ss_dssp -------HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 11123366777777888 8999999999887743 35666778999999999
Q ss_pred hhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Q 005266 482 CIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL 557 (705)
Q Consensus 482 ~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL 557 (705)
..|++++ +.+++++.... ++... .+.+++.+|.++...|++++|..++++++.+. ...+++...+.++
T Consensus 195 ~~~~~~~A~~~~~~a~~~~~~~----~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 266 (338)
T 3ro2_A 195 LLGNFRDAVIAHEQRLLIAKEF----GDKAA---ERRAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSC 266 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHH----TCHHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhc----CChHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhcchhHHHHHH
Confidence 9999877 66777655443 11111 36799999999999999999999999999998 4688999999999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Q 005266 558 TILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 628 (705)
Q Consensus 558 ~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~ 628 (705)
..+|.++...|++++|.+++++++.++.+.++......++..|+.+|...|++++|.+.++.+.+..++++
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 267 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999998887654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.77 E-value=7e-16 Score=169.59 Aligned_cols=385 Identities=10% Similarity=0.035 Sum_probs=274.1
Q ss_pred hHHHHHHHhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchh
Q 005266 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (705)
Q Consensus 3 ~~~~~L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~ 82 (705)
.-+..+..+|..+-..+++..|+.|++.+++..| . +.+...+|.+++ ..+++++|...+++++.+.+..+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~--~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~--- 73 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE----D--PVFYSNLSACYV-SVGDLKKVVEMSTKALELKPDYS--- 73 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC----C--HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCSCCH---
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc----c--HHHHHhHHHHHH-HHhhHHHHHHHHHHHhccChHHH---
Confidence 3567889999999999999999999999998664 2 557788888776 48999999999999998877765
Q ss_pred hhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhcccccccc---------------------------------------
Q 005266 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDV--------------------------------------- 123 (705)
Q Consensus 83 dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~--------------------------------------- 123 (705)
.+++.++.+|...|.+..|...++++++..+.+....
T Consensus 74 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (514)
T 2gw1_A 74 ----KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK 149 (514)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred ----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh
Confidence 7899999999999999999999999988775211110
Q ss_pred ---------------------------------ccchhhHhHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHh-----h
Q 005266 124 ---------------------------------AVKLWSCNFNSQLANAFII---EGDYQSSISALQSGYVCAT-----E 162 (705)
Q Consensus 124 ---------------------------------~~~~W~~~f~~~lA~~~~~---~~d~~~A~~~L~~~~~~A~-----~ 162 (705)
+.+.+ ..+.++..+.. .|++..|+..++++...-. .
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEAD---KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp -------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHH---HHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHH---HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 01111 33445554444 7888888888887766210 0
Q ss_pred cC-----CchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhh
Q 005266 163 IS-----YPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAA 237 (705)
Q Consensus 163 ~~-----~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~ 237 (705)
.+ +....+++.++.++... .++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------------------------------------- 253 (514)
T 2gw1_A 227 NEDEKLKEKLAISLEHTGIFKFLK---NDP-------------------------------------------------- 253 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHS---SCH--------------------------------------------------
T ss_pred ccccccChHHHHHHHHHHHHHHHC---CCH--------------------------------------------------
Confidence 00 11222222222222221 111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCc
Q 005266 238 HHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNA 317 (705)
Q Consensus 238 ~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~ 317 (705)
.++++.+++.++. .
T Consensus 254 -----------------------------------------------~~A~~~~~~~l~~-~------------------ 267 (514)
T 2gw1_A 254 -----------------------------------------------LGAHEDIKKAIEL-F------------------ 267 (514)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHH-C------------------
T ss_pred -----------------------------------------------HHHHHHHHHHHhh-C------------------
Confidence 2222233333333 0
Q ss_pred ccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHH
Q 005266 318 RQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAI 397 (705)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~ 397 (705)
|. +-+++..+.++...|++++|.+++++++.. .|..
T Consensus 268 --------------------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~---------- 303 (514)
T 2gw1_A 268 --------------------PR----VNSYIYMALIMADRNDSTEYYNYFDKALKL----------DSNN---------- 303 (514)
T ss_dssp --------------------CC----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT----------CTTC----------
T ss_pred --------------------cc----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc----------CcCC----------
Confidence 00 234556677788889999988888888764 1110
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 005266 398 WMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 477 (705)
Q Consensus 398 w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nla 477 (705)
+.++..+|.++...|++++|...|.+++++.++.. .+..++|
T Consensus 304 -----------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~ 345 (514)
T 2gw1_A 304 -----------------------------------SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI---FPYIQLA 345 (514)
T ss_dssp -----------------------------------THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS---HHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH---HHHHHHH
Confidence 11123668888999999999999999999877643 3678889
Q ss_pred HHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHH
Q 005266 478 VSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 553 (705)
Q Consensus 478 lv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~ 553 (705)
.++...|++++ +.++++. .|++ ..+++.+|.++...|++++|...+.++++.. ....+....
T Consensus 346 ~~~~~~~~~~~A~~~~~~~~~~------~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 411 (514)
T 2gw1_A 346 CLAYRENKFDDCETLFSEAKRK------FPEA-------PEVPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVG 411 (514)
T ss_dssp HHTTTTTCHHHHHHHHHHHHHH------STTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHH------cccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHHHH
Confidence 99998999876 4555542 2332 3478999999999999999999999999996 344443333
Q ss_pred HHHHHHHHHHHHH---CCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 554 SQYLTILGNLALA---LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 554 a~aL~~LG~i~~~---lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
+.++..+|.++.. .|++++|.+.++.++.+. ++ ...++..++.+|...|++++|.+.++...+...
T Consensus 412 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLD---PR---SEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp SHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC---TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC---cc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 5588999999999 999999999999999763 22 245677899999999999999999888776543
No 8
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.76 E-value=1.7e-15 Score=160.87 Aligned_cols=231 Identities=18% Similarity=0.147 Sum_probs=193.2
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 005266 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (705)
Q Consensus 344 aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~ 423 (705)
+.++...+.++...|++++|.+++++++..... .+ . ..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~---~---------~~-------------------------- 124 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE----LN---D---------KV-------------------------- 124 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HT---C---------HH--------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----cc---c---------cc--------------------------
Confidence 456777788889999999999999999997322 11 0 00
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhc---CChhHHHHHHHHHHHHH
Q 005266 424 FVEAQEACESMIEMLRGQYAHSVGC--------------------YSEAAFHYVEAAKIT---ESKSMQAMCHAYAAVSY 480 (705)
Q Consensus 424 ~~~a~~~~~a~~~~llG~~~~~~g~--------------------~~eA~~~f~~Al~l~---~~~~g~a~a~~nlalv~ 480 (705)
..+.++..+|.++...|+ +++|..+|.+|+++. ++....+.+..++|.++
T Consensus 125 -------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 197 (406)
T 3sf4_A 125 -------GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTH 197 (406)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 112234477888888888 999999999998874 34666788899999999
Q ss_pred HhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHH
Q 005266 481 FCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQY 556 (705)
Q Consensus 481 l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~a 556 (705)
...|++++ +.+++++.... ++... .+.+++.+|.++...|++++|..++++++++. ...+++...+.+
T Consensus 198 ~~~g~~~~A~~~~~~al~~~~~~----~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 269 (406)
T 3sf4_A 198 YLLGNFRDAVIAHEQRLLIAKEF----GDKAA---ERRAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQS 269 (406)
T ss_dssp HHHTBHHHHHHHHHHHHHHHHHT----TCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHhc----CCcHH---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhCcCchHHHHH
Confidence 99999877 67777765543 22222 36799999999999999999999999999998 568899999999
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Q 005266 557 LTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRL 631 (705)
Q Consensus 557 L~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~ 631 (705)
+..+|.+|...|++++|.++++.++.++.+.++.+....++..+|.+|...|++++|.++++.+.+..+++....
T Consensus 270 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 344 (406)
T 3sf4_A 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 344 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988765443
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.75 E-value=3.1e-15 Score=165.89 Aligned_cols=422 Identities=11% Similarity=0.023 Sum_probs=266.5
Q ss_pred hHHHHHHHhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchh
Q 005266 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (705)
Q Consensus 3 ~~~~~L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~ 82 (705)
..+..+..+|..+...+++..|+.|++.+++..|.. +.+...+|.+++. .+++++|...+++++.+.+..+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~--- 93 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE-----PVFYSNISACYIS-TGDLEKVIEFTTKALEIKPDHS--- 93 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC-----HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCH---
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC-----cHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCchH---
Confidence 467889999999999999999999999999877622 3567778877664 8999999999999999887776
Q ss_pred hhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHH--
Q 005266 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA-- 160 (705)
Q Consensus 83 dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A-- 160 (705)
.+++.++.+|...|.+..|...++ ++...+... ..| ...+...+....|+..++......
T Consensus 94 ----~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~-----~~~--------~~~~~~~~~~~~a~~~~~~~l~~~~~ 155 (537)
T 3fp2_A 94 ----KALLRRASANESLGNFTDAMFDLS-VLSLNGDFD-----GAS--------IEPMLERNLNKQAMKVLNENLSKDEG 155 (537)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHH-HHC------------------------CHHHHHHHHHHHHHHHHHCC----
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC-----hHH--------HHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 789999999999999999988774 777665311 111 011111222233444444332110
Q ss_pred -------------------------------hhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhh---cCc
Q 005266 161 -------------------------------TEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWES---IDP 206 (705)
Q Consensus 161 -------------------------------~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~---~~~ 206 (705)
.........+...+..++ .....++.....-+..+...++. +.|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~a~~~~~~A~~~~~~~l~~~p 233 (537)
T 3fp2_A 156 RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLY--SATDEGYLVANDLLTKSTDMYHSLLSANT 233 (537)
T ss_dssp ---CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHH--TCSHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred ccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHHHHCC
Confidence 000111122333333332 11122222222222222222210 011
Q ss_pred ccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHH
Q 005266 207 NRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAG 286 (705)
Q Consensus 207 ~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~ 286 (705)
+..+ .+.....+++.+-.| +...++. .+
T Consensus 234 ~~~~------~~~~~~~~~~~~g~~--------------------------------------~~~~~~~--------~~ 261 (537)
T 3fp2_A 234 VDDP------LRENAALALCYTGIF--------------------------------------HFLKNNL--------LD 261 (537)
T ss_dssp CCHH------HHHHHHHHHHHHHHH--------------------------------------HHHTTCH--------HH
T ss_pred Ccch------hhHHHHHHHHHHHHH--------------------------------------HHhcccH--------HH
Confidence 1000 000111111110000 1111211 33
Q ss_pred HHHHHHHHHHhccCCCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHH
Q 005266 287 RQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQR 366 (705)
Q Consensus 287 ~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~ 366 (705)
+++.+++.++. . |. +-+++..+.++...|++++|.++
T Consensus 262 A~~~~~~~~~~-~--------------------------------------~~----~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 262 AQVLLQESINL-H--------------------------------------PT----PNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHHHHHH-C--------------------------------------CC----HHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHHhc-C--------------------------------------CC----chHHHHHHHHHHHhcCHHHHHHH
Confidence 33444444444 0 00 13455667788888999999988
Q ss_pred HHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHc
Q 005266 367 IQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSV 446 (705)
Q Consensus 367 l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~ 446 (705)
+++++.. .|. .+.++..+|.++...
T Consensus 299 ~~~~~~~----------~~~---------------------------------------------~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 299 FQKAVDL----------NPE---------------------------------------------YPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHH----------CTT---------------------------------------------CHHHHHHHHHHHHHT
T ss_pred HHHHhcc----------CCC---------------------------------------------CHHHHHHHHHHHHhc
Confidence 8888774 111 111223678899999
Q ss_pred CCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHH
Q 005266 447 GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLL 522 (705)
Q Consensus 447 g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~ 522 (705)
|++++|...|.+++++.++.. .+..++|.++...|++++ +.++++. .|++ +.+++.+|.+
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~-------~~~~~~l~~~ 387 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENV---YPYIQLACLLYKQGKFTESEAFFNETKLK------FPTL-------PEVPTFFAEI 387 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC-------THHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-------hHHHHHHHHH
Confidence 999999999999999977643 457888999999999877 5555552 2332 4578899999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC----------CChHHHHHHHHHHHHHHHHcCChhh
Q 005266 523 LMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL----------HDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 523 ~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l----------g~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
+...|++++|...+++++++. ....+.......+..+|.++... |++++|.+.++.++.+. ++
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~--- 460 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLE-EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD---PR--- 460 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC---TT---
T ss_pred HHHhCCHHHHHHHHHHHHHcC-CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC---CC---
Confidence 999999999999999999997 34444444444577888999999 99999999999999773 22
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 593 QIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
...+...||.+|...|++++|.+.++...+...+
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 2467788999999999999999999988877554
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.73 E-value=2.6e-14 Score=148.57 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 594 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~ 594 (705)
.....|.++...|++++|...++++++.. ..++.....++..+|.++...|++++|.+.++.++.+ .+ ...
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~---~~~ 306 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM---EP---DNV 306 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT---TCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---Cc---ccH
Confidence 45566889999999999999999999985 3477777888999999999999999999999999987 22 235
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 595 WALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 595 ~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
.++..+|.++...|++++|.+.++...+.
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67788999999999999999988877654
No 11
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.72 E-value=2.3e-14 Score=153.97 Aligned_cols=183 Identities=12% Similarity=0.069 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCc
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~---~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~ 505 (705)
+.++..+|.++...|++++|+.+|.+|+++.+ +....+.+..|+|.+|...|+++. +.+|+++.......|+
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~- 262 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS- 262 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh-
Confidence 34556899999999999999999999998854 467788899999999999999877 7888887665422132
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LAr 585 (705)
.+.+++.+|.++...|++++|..++++|++++ ...+++...+. +..||.+|...|+. +.++.|+.+.+
T Consensus 263 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~-~~~l~~~~~~~~~~----~~~~~al~~~~ 330 (383)
T 3ulq_A 263 ------LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS-QKAGDVIYLSE-FEFLKSLYLSGPDE----EAIQGFFDFLE 330 (383)
T ss_dssp ------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHH-HHHHHHHHTSSCCH----HHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHcCCHHHHHH-HHHHHHHHhCCCcH----HHHHHHHHHHH
Confidence 37799999999999999999999999999999 56889888776 78899999999998 78899999999
Q ss_pred HcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Q 005266 586 KLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 628 (705)
Q Consensus 586 k~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~ 628 (705)
+.++.+....++..||.+|...|++++|.++++.+.+..+++.
T Consensus 331 ~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~ 373 (383)
T 3ulq_A 331 SKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQ 373 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCS
T ss_pred HCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998887643
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.72 E-value=6.3e-14 Score=152.03 Aligned_cols=385 Identities=12% Similarity=0.038 Sum_probs=268.7
Q ss_pred HHHHHHHhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhh
Q 005266 4 VAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFE 83 (705)
Q Consensus 4 ~~~~L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~d 83 (705)
-+..+..+|..+...+++..|+.+++.+++..+. .+.+...+|.+++ ..+++++|...|++++.+.+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~---- 94 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-----NYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFT---- 94 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCH----
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcH----
Confidence 3567888999999999999999999999976551 1556677777765 57899999999999998876665
Q ss_pred hhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhh-------HhHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005266 84 LKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWS-------CNFNSQLANAFIIEGDYQSSISALQSG 156 (705)
Q Consensus 84 lK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~-------~~f~~~lA~~~~~~~d~~~A~~~L~~~ 156 (705)
.+++.++.+|...|.+..|...++++++..+.+... ...|. ..-.+.+|.++...|++..|+..++++
T Consensus 95 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 95 ---AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEE--KEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh--HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 788999999999999999999999999987732100 01220 111345688899999999999999998
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhh
Q 005266 157 YVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNA 236 (705)
Q Consensus 157 ~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~ 236 (705)
... ++....+.+.++.++..+ .+++++...+
T Consensus 170 ~~~----~~~~~~~~~~l~~~~~~~---g~~~~A~~~~------------------------------------------ 200 (450)
T 2y4t_A 170 LEV----CVWDAELRELRAECFIKE---GEPRKAISDL------------------------------------------ 200 (450)
T ss_dssp HHH----CTTCHHHHHHHHHHHHHT---TCGGGGHHHH------------------------------------------
T ss_pred HHh----CCCChHHHHHHHHHHHHC---CCHHHHHHHH------------------------------------------
Confidence 876 666777777777777555 3322221111
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCC
Q 005266 237 AHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGN 316 (705)
Q Consensus 237 ~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~ 316 (705)
++.++. .| .
T Consensus 201 -------------------------------------------------------~~~~~~-~~---~------------ 209 (450)
T 2y4t_A 201 -------------------------------------------------------KAASKL-KN---D------------ 209 (450)
T ss_dssp -------------------------------------------------------HHHHHH-HC---S------------
T ss_pred -------------------------------------------------------HHHHHh-CC---C------------
Confidence 111111 00 0
Q ss_pred cccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhH
Q 005266 317 ARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSA 396 (705)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~ 396 (705)
.+-++...+.++...|++++|.+++++++.. .|.. ..
T Consensus 210 --------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~p~~-------~~ 246 (450)
T 2y4t_A 210 --------------------------NTEAFYKISTLYYQLGDHELSLSEVRECLKL----------DQDH-------KR 246 (450)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTC-------HH
T ss_pred --------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCh-------HH
Confidence 1123455567777889999999999999874 2221 12
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hhHHHHHHHH
Q 005266 397 IWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHAY 475 (705)
Q Consensus 397 ~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~-~~g~a~a~~n 475 (705)
.| ..+. .. ........+|..+...|++++|..+|.+++++.++ ......+..+
T Consensus 247 ~~--~~~~---~~---------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 247 CF--AHYK---QV---------------------KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKER 300 (450)
T ss_dssp HH--HHHH---HH---------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HH--HHHH---HH---------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 23 1110 00 01112345799999999999999999999999876 3344567889
Q ss_pred HHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHH
Q 005266 476 AAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ 551 (705)
Q Consensus 476 lalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~ 551 (705)
++.++...|++++ +.+++++ .|++ +.+|+.+|.++...|++++|...+++++++. -.+
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~------~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~-- 362 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQM------EPDN-------VNALKDRAEAYLIEEMYDEAIQDYETAQEHN---END-- 362 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHH------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh------Cccc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---cch--
Confidence 9999999999877 5555552 3332 5689999999999999999999999999874 223
Q ss_pred HHHHHHHHHH------------HHHHHCC-----ChHHHHHHHHH-HHHHHHHcCChh-------hHHHHHHHHHHHHHH
Q 005266 552 LVSQYLTILG------------NLALALH-----DTVQAREILRS-SLTLAKKLYDIP-------TQIWALSVLTALYQQ 606 (705)
Q Consensus 552 l~a~aL~~LG------------~i~~~lg-----~~~qA~~~~~~-Al~LArk~gD~~-------~q~~al~~L~~l~~~ 606 (705)
..++..+| +.|..+| +.+++.+.|++ ++.+ .+|.. ........++..|..
T Consensus 363 --~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~---~pd~~~~~~~~~~a~~~~~~i~~ay~~ 437 (450)
T 2y4t_A 363 --QQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW---HPDNFQNEEEKKKAEKKFIDIAAAKEV 437 (450)
T ss_dssp --HHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS---CGGGCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh---CCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 23566677 4566666 55667887876 4432 23321 234567788999999
Q ss_pred cCCchHHHH
Q 005266 607 LGDRGNEME 615 (705)
Q Consensus 607 ~Gd~~~A~e 615 (705)
+||++++..
T Consensus 438 L~d~~~r~~ 446 (450)
T 2y4t_A 438 LSDPEMRKK 446 (450)
T ss_dssp SSGGGGC--
T ss_pred hCCHHHHHh
Confidence 999987654
No 13
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.71 E-value=2.2e-13 Score=153.54 Aligned_cols=442 Identities=13% Similarity=0.018 Sum_probs=276.5
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccc
Q 005266 45 KTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVA 124 (705)
Q Consensus 45 ~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~ 124 (705)
..-..+++.++. .+++++|...++++..+.+.. ..++.++.+|...|.+..|...+++++...
T Consensus 85 ~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------- 147 (597)
T 2xpi_A 85 DYLRLWRHDALM-QQQYKCAAFVGEKVLDITGNP--------NDAFWLAQVYCCTGDYARAKCLLTKEDLYN-------- 147 (597)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHCCH--------HHHHHHHHHHHHTTCHHHHHHHHHHTCGGG--------
T ss_pred HHHHHHHHHHHH-ccCchHHHHHHHHHHhhCCCc--------hHHHHHHHHHHHcCcHHHHHHHHHHHhccc--------
Confidence 334455555444 689999999999987654422 466789999999999999999888876543
Q ss_pred cchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHH------------hhcCCchHHHHHHHHHHHHHhcccCChhHHHH
Q 005266 125 VKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA------------TEISYPDLQMFFATAILHVHLMQWDDENSVLR 192 (705)
Q Consensus 125 ~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A------------~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~ 192 (705)
.+.+ .++.++.+|...|++..|++.|++..... .........+.+.++.++... .+++++..
T Consensus 148 ~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~ 221 (597)
T 2xpi_A 148 RSSA---CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL---SNFDRAKE 221 (597)
T ss_dssp TCHH---HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred cchh---HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc---CCHHHHHH
Confidence 2233 56678999999999999999998521110 000023578888999988887 88888888
Q ss_pred HHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHH--HHHHHHHHHHHHHhhhhHHhhhh
Q 005266 193 SINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAM--KADKQKMQEIQQLSSELDALNQS 270 (705)
Q Consensus 193 al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l--~~~~qk~~~~q~l~~~l~~l~~~ 270 (705)
.+.++...- |+ ...+++.|-.+........ ......+ ......- +.. ...+ +
T Consensus 222 ~~~~~~~~~----p~-------------~~~~~~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~---~~~---~~~~--~ 275 (597)
T 2xpi_A 222 CYKEALMVD----AK-------------CYEAFDQLVSNHLLTADEE-WDLVLKLNYSTYSKED---AAF---LRSL--Y 275 (597)
T ss_dssp HHHHHHHHC----TT-------------CHHHHHHHHHTTCSCHHHH-HHHHHHSCTHHHHGGG---HHH---HHHH--H
T ss_pred HHHHHHHhC----ch-------------hhHHHHHHHHhhcccchhH-HHHHHhcCCcccccch---HHH---HHHH--H
Confidence 887775431 11 1112222222221111000 0000000 0000000 000 0000 0
Q ss_pred cCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHH
Q 005266 271 LSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMV 350 (705)
Q Consensus 271 L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~ 350 (705)
....+.-.+ ...+.+-.+.++. +. +....+.++...
T Consensus 276 ~~~~~~~~~-----~g~~~~A~~~~~~-----~~----------------------------------~~~~~~~~~~~l 311 (597)
T 2xpi_A 276 MLKLNKTSH-----EDELRRAEDYLSS-----IN----------------------------------GLEKSSDLLLCK 311 (597)
T ss_dssp HTTSCTTTT-----HHHHHHHHHHHHT-----ST----------------------------------TGGGCHHHHHHH
T ss_pred HHHHHHHcC-----cchHHHHHHHHHH-----hh----------------------------------cCCchHHHHHHH
Confidence 000000000 1111222222222 10 001234556667
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhh
Q 005266 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (705)
Q Consensus 351 ~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~ 430 (705)
+..+...|++++|.++++++++. .|. + ...|.....++...- ... -.+...+-.....+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~----------~~~----~---~~~~~~l~~~~~~~g---~~~-~A~~~~~~~~~~~~ 370 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEI----------DPY----N---LDVYPLHLASLHESG---EKN-KLYLISNDLVDRHP 370 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----------CTT----C---CTTHHHHHHHHHHHT---CHH-HHHHHHHHHHHHCT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHc----------Ccc----c---HHHHHHHHHHHHHhC---CHH-HHHHHHHHHHhhCc
Confidence 78888999999999999998874 111 1 112211111111110 000 00111111112334
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
..+.+.+.+|.++...|++++|...|.+++++.++.. .+..+++.++...|++++ +.++++ ..|++
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~- 440 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG---PAWIGFAHSFAIEGEHDQAISAYTTAAR------LFQGT- 440 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHH------TTTTC-
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCccc-
Confidence 5678889999999999999999999999999866532 356788888988999776 344443 22332
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 586 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk 586 (705)
+.+|+.+|.++...|++++|...+++++++. ..++ .++..||.++...|++++|.+.+++++.+..+
T Consensus 441 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 441 ------HLPYLFLGMQHMQLGNILLANEYLQSSYALF---QYDP----LLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp ------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCh----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 4588999999999999999999999998874 2232 57889999999999999999999999999988
Q ss_pred cCChhhH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 587 LYDIPTQ-IWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 587 ~gD~~~q-~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
.+..+.. ..++..++.+|...|++++|.+.++...+.
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 7765553 678889999999999999999998887665
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.70 E-value=5.1e-14 Score=152.75 Aligned_cols=349 Identities=9% Similarity=-0.024 Sum_probs=210.9
Q ss_pred cHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHc
Q 005266 20 EIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLV 99 (705)
Q Consensus 20 ~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~ 99 (705)
....+..++..++..+| ..+.+.+.+|..++. .+++++|...|++++.+.+..+ .+++.++.+|...
T Consensus 7 ~~~~~~~~~~~~~~~~p-----~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~l~~~p~~~-------~~~~~l~~~~~~~ 73 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSM-----ADVEKHLELGKKLLA-AGQLADALSQFHAAVDGDPDNY-------IAYYRRATVFLAM 73 (450)
T ss_dssp ----------------C-----HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHT
T ss_pred ccccccccccccccccH-----HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCccH-------HHHHHHHHHHHHC
Confidence 34455566666664333 345566777776654 6778888888888777655554 6777788888888
Q ss_pred CCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchH---HHHHHHHH
Q 005266 100 GAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDL---QMFFATAI 176 (705)
Q Consensus 100 ~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~---~~~~~La~ 176 (705)
|.+..|...++++++..+ .+.+ .++.+|.++...|++..|++.+++.... ++... .+...++.
T Consensus 74 g~~~~A~~~~~~al~~~p-------~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~ 139 (450)
T 2y4t_A 74 GKSKAALPDLTKVIQLKM-------DFTA---ARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIK 139 (450)
T ss_dssp TCHHHHHHHHHHHHHHCT-------TCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-------CcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHH
Confidence 888888888888887765 3333 5566788888888888888888776654 44333 33333333
Q ss_pred HHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 005266 177 LHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQE 256 (705)
Q Consensus 177 ~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~ 256 (705)
++.... .++.+. + |...|+ .
T Consensus 140 ~~~~~~----------~~~~a~-------------------------~--------~~~~~~----~------------- 159 (450)
T 2y4t_A 140 SDEMQR----------LRSQAL-------------------------N--------AFGSGD----Y------------- 159 (450)
T ss_dssp HHHHHH----------HHHHHH-------------------------H--------HHHHTC----H-------------
T ss_pred HHHHHH----------HHHHHH-------------------------H--------HHHcCC----H-------------
Confidence 221110 000000 0 000000 1
Q ss_pred HHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccccCCCCccccc
Q 005266 257 IQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEW 336 (705)
Q Consensus 257 ~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~W 336 (705)
.++++.+++.++. . |
T Consensus 160 ----------------------------~~A~~~~~~~~~~-~--------~---------------------------- 174 (450)
T 2y4t_A 160 ----------------------------TAAIAFLDKILEV-C--------V---------------------------- 174 (450)
T ss_dssp ----------------------------HHHHHHHHHHHHH-C--------T----------------------------
T ss_pred ----------------------------HHHHHHHHHHHHh-C--------C----------------------------
Confidence 1222222232322 0 0
Q ss_pred ccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHH
Q 005266 337 LPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVA 416 (705)
Q Consensus 337 Lpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~ 416 (705)
..+.++...+.++...|++++|.++++++++.
T Consensus 175 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------------------------- 206 (450)
T 2y4t_A 175 -----WDAELRELRAECFIKEGEPRKAISDLKAASKL------------------------------------------- 206 (450)
T ss_dssp -----TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-------------------------------------------
T ss_pred -----CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------------------------------------
Confidence 01233455556666666666666655555442
Q ss_pred HhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhh
Q 005266 417 VELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLI 496 (705)
Q Consensus 417 ~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli 496 (705)
.+..+.+++.+|.++...|++++|..+|.+++.+.++.... ...++.+
T Consensus 207 ------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~~~~~----------------- 254 (450)
T 2y4t_A 207 ------------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC---FAHYKQV----------------- 254 (450)
T ss_dssp ------------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH---HHHHHHH-----------------
T ss_pred ------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHH---HHHHHHH-----------------
Confidence 01123466677777777777777777777777665543200 0000000
Q ss_pred ccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHH
Q 005266 497 GPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREI 576 (705)
Q Consensus 497 ~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~ 576 (705)
.....+...|.++...|++++|...+++++++. -.++.....++..+|.++...|++++|.+.
T Consensus 255 --------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 255 --------------KKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp --------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 012345666889999999999999999999974 347777788999999999999999999999
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 577 LRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 577 ~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
++.++.+. + ....++..+|.++...|++++|.+.++...+.
T Consensus 318 ~~~a~~~~---p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 318 CSEVLQME---P---DNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHC---T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhC---c---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999772 2 23567788999999999999999999888664
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.69 E-value=5e-14 Score=154.75 Aligned_cols=423 Identities=12% Similarity=0.033 Sum_probs=265.1
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccc
Q 005266 41 IIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSAS 120 (705)
Q Consensus 41 ~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~ 120 (705)
...|.+.+..|..++. .+++++|...|++++.+.+. + .+++.++.+|...|++..|...++++++..+
T Consensus 3 ~~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~-~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--- 70 (514)
T 2gw1_A 3 DKYALALKDKGNQFFR-NKKYDDAIKYYNWALELKED-P-------VFYSNLSACYVSVGDLKKVVEMSTKALELKP--- 70 (514)
T ss_dssp HHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHCCC-H-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS---
T ss_pred chhHHHHHHHHHHHHH-hccHHHHHHHHHHHHhcCcc-H-------HHHHhHHHHHHHHhhHHHHHHHHHHHhccCh---
Confidence 4567778888888775 68999999999999887642 3 7889999999999999999999999999877
Q ss_pred cccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHH
Q 005266 121 QDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRV 200 (705)
Q Consensus 121 ~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~ 200 (705)
.+.. .++.+|.++...|++..|+..|+++... ++.....+..+...........+...+...++.+...
T Consensus 71 ----~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 139 (514)
T 2gw1_A 71 ----DYSK---VLLRRASANEGLGKFADAMFDLSVLSLN----GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT 139 (514)
T ss_dssp ----CCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHS----SSCCGGGTHHHHHHHHHHHHHHHHTTC----------
T ss_pred ----HHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhc----CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333 5677899999999999999999998776 3221111111111111110000000000000000000
Q ss_pred hhhcC--ccc--ccccccchhhhhHHHHHHHHhhhhhhhhhh--hh---hhhHHHHHHHHHHHHHHHHHhhhhHHhhhhc
Q 005266 201 WESID--PNR--RGQCLGLLFYNELLHIFYRLRICDYKNAAH--HV---DNLDAAMKADKQKMQEIQQLSSELDALNQSL 271 (705)
Q Consensus 201 ~~~~~--~~~--~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~--~v---~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L 271 (705)
...+. +.. .......+ ....+...+.. +..... .+ ...+..+. +. ..++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~--~~~~ 197 (514)
T 2gw1_A 140 PTELSTQPAKERKDKQENLP---SVTSMASFFGI--FKPELTFANYDESNEADKELM---------------NG--LSNL 197 (514)
T ss_dssp -----------------CCC---CHHHHHHHHTT--SCCCCCCSSCCSSCHHHHHHH---------------HH--HHHH
T ss_pred hhhccCChhhHHHhhccCCc---hhHHHHHHHhh--cCHHHHHHHhcCCcHHHHHHH---------------HH--HHHH
Confidence 00000 000 00000000 00000110000 000000 00 00000000 00 0011
Q ss_pred C---CCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHH
Q 005266 272 S---RPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDL 348 (705)
Q Consensus 272 ~---~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yl 348 (705)
. .++. +++++.+++.++. ...... . .++ +. +.....+.+++
T Consensus 198 ~~~~~~~~--------~~A~~~~~~~~~~-----~~~~~~-------~---~~~----------~~---~~~~~~~~~~~ 241 (514)
T 2gw1_A 198 YKRSPESY--------DKADESFTKAARL-----FEEQLD-------K---NNE----------DE---KLKEKLAISLE 241 (514)
T ss_dssp SSCCTTHH--------HHHHHHHHHHHHH-----HHHHTT-------T---STT----------CH---HHHHHHHHHHH
T ss_pred HhhhhccH--------HHHHHHHHHHHHH-----hhhhhc-------c---Ccc----------cc---ccChHHHHHHH
Confidence 1 2222 4444555555542 000000 0 000 00 00123567778
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhh
Q 005266 349 MVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ 428 (705)
Q Consensus 349 l~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~ 428 (705)
..+.++...|++++|.+++++++.. . |. . .
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~----------~---~~-----~-----~--------------------------- 271 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIEL----------F---PR-----V-----N--------------------------- 271 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHH----------C---CC-----H-----H---------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh----------C---cc-----H-----H---------------------------
Confidence 8889999999999999999999875 1 11 0 1
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCC
Q 005266 429 EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKD 504 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~ 504 (705)
++..+|.++...|++++|...|.+++++.++.. .+..++|.++...|+++. +.+++++ .|+
T Consensus 272 ------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~ 336 (514)
T 2gw1_A 272 ------SYIYMALIMADRNDSTEYYNYFDKALKLDSNNS---SVYYHRGQMNFILQNYDQAGKDFDKAKEL------DPE 336 (514)
T ss_dssp ------HHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT---HHHHHHHHHHHHTTCTTHHHHHHHHHHHT------CSS
T ss_pred ------HHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh------Chh
Confidence 112568888999999999999999999876543 357888999999999877 5555552 233
Q ss_pred ccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 505 TINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 505 ~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
+ ..+++.+|.++...|++++|...+.++++.. . .+ ..++..+|.++...|++++|.+.++.++.+.
T Consensus 337 ~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~--~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 337 N-------IFPYIQLACLAYRENKFDDCETLFSEAKRKF-P--EA----PEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp C-------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-T--TC----SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred h-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-c--cC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 2 3488999999999999999999999999874 2 22 2478899999999999999999999999998
Q ss_pred HHcCChhhHHHHHHHHHHHHHH---cCCchHHHHHHHHHHHH
Q 005266 585 KKLYDIPTQIWALSVLTALYQQ---LGDRGNEMENDEYRRKK 623 (705)
Q Consensus 585 rk~gD~~~q~~al~~L~~l~~~---~Gd~~~A~e~~~~~~~~ 623 (705)
.+.++......++..+|.++.. .|++++|.+.++...+.
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 8887766656678899999999 99999999998887664
No 16
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.68 E-value=3.6e-14 Score=145.22 Aligned_cols=251 Identities=17% Similarity=0.133 Sum_probs=198.3
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhh-HHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 005266 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHS-AIWMAGVYLMLLMQFLENKVAVELTRS 422 (705)
Q Consensus 344 aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~-~~w~~~~~~~l~~~~Le~~~~~~L~~~ 422 (705)
+...++.+..+...|++++|.++++++++. .|. +.... .+|.....++ ....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----------~~~----~~~~~~~~~~~l~~~~-------------~~~g 57 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQV----------GTE----DLKTLSAIYSQLGNAY-------------FYLH 57 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CCS----CHHHHHHHHHHHHHHH-------------HHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh----------Ccc----cHHHHHHHHHHHHHHH-------------HHcC
Confidence 456677899999999999999999999985 111 11101 1221111111 1111
Q ss_pred hhHHhh---------------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHhhC
Q 005266 423 GFVEAQ---------------EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYFCIG 484 (705)
Q Consensus 423 ~~~~a~---------------~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~---~~~g~a~a~~nlalv~l~~g 484 (705)
++..|. .+..+.++..+|.++...|++++|..+|.+|+++.+ +....+.+..++|.++...|
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 58 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 222221 224578889999999999999999999999998854 35667788999999999988
Q ss_pred C--------------------hhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005266 485 D--------------------AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGL 540 (705)
Q Consensus 485 d--------------------~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL 540 (705)
+ ++. +.+++++.... ++... .+.+++.+|.++...|++++|..++++++
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~----~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL----GDRAA---QGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH----TCHHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc----CCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8 655 56666655443 12111 36789999999999999999999999999
Q ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 005266 541 QIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 620 (705)
Q Consensus 541 ~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 620 (705)
+++ ...+++...+.++..+|.++...|++++|.+.++.++.+..+.++.+...+++..+|.+|...|++++|.+.++..
T Consensus 211 ~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 211 LIA-KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHH-HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH-HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 998 4688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 005266 621 RKKLDELQK 629 (705)
Q Consensus 621 ~~~~~~l~~ 629 (705)
.....+...
T Consensus 290 ~~~~~~~~~ 298 (338)
T 3ro2_A 290 LAIAQELKD 298 (338)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHhcCC
Confidence 888876544
No 17
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.68 E-value=3.7e-14 Score=152.34 Aligned_cols=193 Identities=13% Similarity=0.118 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCc
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT---ESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~---~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~ 505 (705)
...++.+|.++...|++++|..+|.+|+++. ++....+.+..++|.+|...|+++. +.+|++++..... .
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---~ 179 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA---Y 179 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST---T
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc---c
Confidence 4456679999999999999999999999884 4467788999999999999999877 7889987776521 1
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LAr 585 (705)
..+ .+.+++.+|.++...|++++|..++.+|++++ ...+++...+.++..||.+|..+|++++|.+++++|+.+++
T Consensus 180 ~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 180 NIR---LLQCHSLFATNFLDLKQYEDAISHFQKAYSMA-EAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp HHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 222 47899999999999999999999999999999 46899999999999999999999999999999999999999
Q ss_pred HcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Q 005266 586 KLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLA 632 (705)
Q Consensus 586 k~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~ 632 (705)
+.++.+....++..||.+|...|++++|.+.++.+.+..+...+...
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99997888999999999999999999999999999998876554433
No 18
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.67 E-value=4e-14 Score=151.97 Aligned_cols=261 Identities=16% Similarity=0.106 Sum_probs=200.6
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhh-HHHHHHHHHHHHHHHHhHHHHHhhh
Q 005266 342 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHS-AIWMAGVYLMLLMQFLENKVAVELT 420 (705)
Q Consensus 342 ~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~-~~w~~~~~~~l~~~~Le~~~~~~L~ 420 (705)
..+..++..+..+...|++++|.++++++++. .+. +.... .+|.....++...- +...+..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----------~~~----~~~~~~~~~~~lg~~~~~~g--~~~~A~~-- 107 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQA----------GTE----DLRTLSAIYSQLGNAYFYLG--DYNKAMQ-- 107 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CCS----CHHHHHHHHHHHHHHHHHHT--CHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh----------ccc----ChhHHHHHHHHHHHHHHHCC--CHHHHHH--
Confidence 44566677889999999999999999999985 111 11111 22211111111110 0000110
Q ss_pred hhhhHHhh------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHhhCC------
Q 005266 421 RSGFVEAQ------EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYFCIGD------ 485 (705)
Q Consensus 421 ~~~~~~a~------~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~---~~~g~a~a~~nlalv~l~~gd------ 485 (705)
..+-.... .+..+.++..+|.++...|++++|..+|.+|+++.+ +....+.+..++|.+|...|+
T Consensus 108 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 187 (411)
T 4a1s_A 108 YHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRN 187 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccccc
Confidence 00000000 235678899999999999999999999999998854 356778899999999999998
Q ss_pred -----------hhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCH
Q 005266 486 -----------AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 550 (705)
Q Consensus 486 -----------~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~ 550 (705)
++. +.+++++.... ++... .+.+++.+|.++...|++++|..++++++++. ...+++
T Consensus 188 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~----~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 259 (411)
T 4a1s_A 188 PGKFGDDVKEALTRAVEFYQENLKLMRDL----GDRGA---QGRACGNLGNTYYLLGDFQAAIEHHQERLRIA-REFGDR 259 (411)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHH----TCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHc----CCHHH---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhcCCc
Confidence 655 56666655544 11111 37799999999999999999999999999998 468899
Q ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Q 005266 551 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 628 (705)
Q Consensus 551 ~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~ 628 (705)
...+.++..+|.+|...|++++|.++++.++.+..+.++......++..+|.+|...|++++|.++++...+...+..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998877654
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.67 E-value=1.6e-13 Score=152.19 Aligned_cols=394 Identities=10% Similarity=0.029 Sum_probs=255.2
Q ss_pred hhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcC
Q 005266 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (705)
Q Consensus 85 K~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~ 164 (705)
...+++.++.+|+..|++..|...++++++..+ .+.+ .++.+|.++...|++..|++.++++... +
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~----~ 89 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-------NEPV---FYSNISACYISTGDLEKVIEFTTKALEI----K 89 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-------TCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-------CCcH---HHHHHHHHHHHcCCHHHHHHHHHHHHhc----C
Confidence 347788899999999999999999999999887 4444 6778899999999999999999998887 7
Q ss_pred CchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCccccccccc----chhhhhHHHHHH-HHhhhhhhhhhhh
Q 005266 165 YPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLG----LLFYNELLHIFY-RLRICDYKNAAHH 239 (705)
Q Consensus 165 ~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G----~~~~~E~l~v~~-~L~vc~~~~~~~~ 239 (705)
+....+++.++.++..+ .+++++...+..+ . +.++....+.. .....+.+.++. .+.... ......
T Consensus 90 p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~-~~~~~~ 160 (537)
T 3fp2_A 90 PDHSKALLRRASANESL---GNFTDAMFDLSVL-S----LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDE-GRGSQV 160 (537)
T ss_dssp TTCHHHHHHHHHHHHHH---TCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC--------CC
T ss_pred CchHHHHHHHHHHHHHc---CCHHHHHHHHHHH-h----cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCc-cccccc
Confidence 88899999999999888 7788887776422 1 11111110000 000011111111 000000 000000
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChh---------------------hhhHHHHHHHHHHHHHHhc
Q 005266 240 VDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSR---------------------ERSALAGRQAKLQQRLRSL 298 (705)
Q Consensus 240 v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~---------------------~~~~l~~~~~~lq~~i~~~ 298 (705)
. .....+... ......-..+..+....+..+. ......++++..++.++.
T Consensus 161 ~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~- 231 (537)
T 3fp2_A 161 L-PSNTSLASF-------FGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA- 231 (537)
T ss_dssp C-CCHHHHHHH-------HHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred c-chHhHHHHH-------HHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-
Confidence 0 000000000 0000000001111111111110 000112222222222222
Q ss_pred cCCCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q 005266 299 EDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDAL 378 (705)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l 378 (705)
.|.+ .. .| ...+.++...+.++...|++++|.+++++++..
T Consensus 232 ~p~~-----------------------------~~-~~----~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----- 272 (537)
T 3fp2_A 232 NTVD-----------------------------DP-LR----ENAALALCYTGIFHFLKNNLLDAQVLLQESINL----- 272 (537)
T ss_dssp -CCC-----------------------------HH-HH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCCc-----------------------------ch-hh----HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-----
Confidence 0000 00 01 134667888889999999999999999999885
Q ss_pred HhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005266 379 LKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVE 458 (705)
Q Consensus 379 ~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~ 458 (705)
.|. ...| ..+|.++...|++++|..+|.+
T Consensus 273 -----~~~--------~~~~--------------------------------------~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 273 -----HPT--------PNSY--------------------------------------IFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp -----CCC--------HHHH--------------------------------------HHHHHHTCCSSCCHHHHHHHHH
T ss_pred -----CCC--------chHH--------------------------------------HHHHHHHHHhcCHHHHHHHHHH
Confidence 111 0111 2568888899999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHH
Q 005266 459 AAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARN 534 (705)
Q Consensus 459 Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~ 534 (705)
+++..++. ..+..++|.++...|+++. +.+++++ .|++ ..+++.+|.++...|++++|..
T Consensus 302 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~-------~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 302 AVDLNPEY---PPTYYHRGQMYFILQDYKNAKEDFQKAQSL------NPEN-------VYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp HHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC-------SHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCC-------HHHHHHHHHHHHHcCCHHHHHH
Confidence 99997763 2458888999999999877 5565552 2332 3579999999999999999999
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc-------
Q 005266 535 RLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL------- 607 (705)
Q Consensus 535 ~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~------- 607 (705)
.++++++.. . .+ ..++..+|.++...|++++|.+.++.++.+.....+.....-.+..++.++...
T Consensus 366 ~~~~~~~~~-~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 438 (537)
T 3fp2_A 366 FFNETKLKF-P--TL----PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQ 438 (537)
T ss_dssp HHHHHHHHC-T--TC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHhC-C--CC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchh
Confidence 999999884 2 22 247788999999999999999999999999999888877776677888999999
Q ss_pred ---CCchHHHHHHHHHHHH
Q 005266 608 ---GDRGNEMENDEYRRKK 623 (705)
Q Consensus 608 ---Gd~~~A~e~~~~~~~~ 623 (705)
|++++|.+.++...+.
T Consensus 439 ~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 439 LDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHh
Confidence 9999999999887765
No 20
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.66 E-value=3.3e-13 Score=144.99 Aligned_cols=228 Identities=11% Similarity=-0.029 Sum_probs=129.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 005266 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (705)
Q Consensus 344 aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~ 423 (705)
...|+..++++...|++++|..++++|+... ...+ . ...
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~---~---------~~~------------------------- 139 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKEL----PFVS---D---------DIE------------------------- 139 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTG----GGCC---C---------HHH-------------------------
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----hhCC---C---------hHH-------------------------
Confidence 4567888999999999999999999998861 1111 0 000
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHhhCChhh----HHHHHHh
Q 005266 424 FVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES----KSMQAMCHAYAAVSYFCIGDAES----SSQAIDL 495 (705)
Q Consensus 424 ~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~----~~g~a~a~~nlalv~l~~gd~d~----~~~ALel 495 (705)
.+.+++.+|.++...|++++|..+|.+|+.+.+. ....+.+..++|.+|...|+++. +.+|+++
T Consensus 140 --------~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 211 (378)
T 3q15_A 140 --------KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL 211 (378)
T ss_dssp --------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1112234455555555555555555555554332 22344455555555555555444 4444444
Q ss_pred hccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHH
Q 005266 496 IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQARE 575 (705)
Q Consensus 496 i~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~ 575 (705)
.... ++... .+.+++++|.++..+|++++|..++.+|+.++ +..+++.. +.++..||.+|..+|++++|.+
T Consensus 212 ~~~~----~~~~~---~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~ 282 (378)
T 3q15_A 212 AMDI----QNDRF---IAISLLNIANSYDRSGDDQMAVEHFQKAAKVS-REKVPDLL-PKVLFGLSWTLCKAGQTQKAFQ 282 (378)
T ss_dssp HHHT----TCHHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHCGGGH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHc----CCHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HhhCChhH-HHHHHHHHHHHHHCCCHHHHHH
Confidence 3332 11111 24455555555555555555555555555554 23444444 4555555555555555555555
Q ss_pred HHHHHHHHH-----------------------------------HHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 005266 576 ILRSSLTLA-----------------------------------KKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 620 (705)
Q Consensus 576 ~~~~Al~LA-----------------------------------rk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 620 (705)
.+++|+.++ ++.++.+........||.+|...|++++|.+++..+
T Consensus 283 ~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 283 FIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555544 444444555556677888888888888888888888
Q ss_pred HHHHHHHHH
Q 005266 621 RKKLDELQK 629 (705)
Q Consensus 621 ~~~~~~l~~ 629 (705)
.+..+++.+
T Consensus 363 l~~~~~~~~ 371 (378)
T 3q15_A 363 LKAQEDILK 371 (378)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888887665
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=1e-13 Score=151.81 Aligned_cols=393 Identities=11% Similarity=0.035 Sum_probs=232.1
Q ss_pred hHHhHHHHHHhccCCC-CChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchh-hhh-hhHHHHHHHHHHH
Q 005266 22 GKAVKCLEAICQSHVS-FLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF-ELK-CRTFSLLSQCYHL 98 (705)
Q Consensus 22 ~~ai~CLea~~~~~~~-~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~-dlK-~~~~~lLA~~y~~ 98 (705)
..++.++|-.+..... +++...|.+.--+|.+.+ ..+++++|..+|+||+.+.+....-. +.+ ..++.-|+.+|..
T Consensus 28 ~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~-~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~ 106 (472)
T 4g1t_A 28 ENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKH-LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH 106 (472)
T ss_dssp CCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH
Confidence 3456667655533222 234444555556776654 57999999999999999876653322 222 2456779999999
Q ss_pred cCCChhHHHHHHHHHhhccccccccc-cchhhHhHHHHHH--HHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 005266 99 VGAIPPQKLILYKALDLTSSASQDVA-VKLWSCNFNSQLA--NAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATA 175 (705)
Q Consensus 99 ~~~~~~ak~~l~kai~~~~~~~~~~~-~~~W~~~f~~~lA--~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La 175 (705)
+|+...|...++|+++..+.....+. .... .+..++ .+....++|..|++.+++...+ ++...++.+.++
T Consensus 107 ~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~y~~A~~~~~kal~~----~p~~~~~~~~~~ 179 (472)
T 4g1t_A 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPE---LDCEEGWTRLKCGGNQNERAKVCFEKALEK----KPKNPEFTSGLA 179 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH---HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----STTCHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHhHhcccccchhhHH---HHHHHHHHHHHHccccHHHHHHHHHHHHHh----CCCCHHHHHHHH
Confidence 99999999999999988764322221 1122 223333 3444567899999999998876 676777777776
Q ss_pred HHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 005266 176 ILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQ 255 (705)
Q Consensus 176 ~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~ 255 (705)
.++..+..+.+.+++ +
T Consensus 180 ~~~~~l~~~~~~~~a--------------------------------------------------------l-------- 195 (472)
T 4g1t_A 180 IASYRLDNWPPSQNA--------------------------------------------------------I-------- 195 (472)
T ss_dssp HHHHHHHHSCCCCCT--------------------------------------------------------H--------
T ss_pred HHHHHhcCchHHHHH--------------------------------------------------------H--------
Confidence 665554221111111 1
Q ss_pred HHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccccCCCCcccc
Q 005266 256 EIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGE 335 (705)
Q Consensus 256 ~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 335 (705)
+.+++-++- +|.+.
T Consensus 196 ---------------------------------~~~~~al~l-~p~~~-------------------------------- 209 (472)
T 4g1t_A 196 ---------------------------------DPLRQAIRL-NPDNQ-------------------------------- 209 (472)
T ss_dssp ---------------------------------HHHHHHHHH-CSSCH--------------------------------
T ss_pred ---------------------------------HHHHHHhhc-CCcch--------------------------------
Confidence 111111222 10000
Q ss_pred cccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHH
Q 005266 336 WLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKV 415 (705)
Q Consensus 336 WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~ 415 (705)
..++...+..+..+...|.+++|.+++++++.. .|..
T Consensus 210 -----~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----------~~~~---------------------------- 246 (472)
T 4g1t_A 210 -----YLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----------APGV---------------------------- 246 (472)
T ss_dssp -----HHHHHHHHHHHHCC------CHHHHHHHHHHHH----------CSSC----------------------------
T ss_pred -----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----------CccH----------------------------
Confidence 001111222334556677788899988888775 1221
Q ss_pred HHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCC----------
Q 005266 416 AVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD---------- 485 (705)
Q Consensus 416 ~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd---------- 485 (705)
+.+...+|.++...|++++|...|.+|+++.++.. .+..++|.+|...+.
T Consensus 247 -----------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 247 -----------------TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA---YLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHHHHHHHC-----
T ss_pred -----------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH---HHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 11123678999999999999999999999987743 346667776654211
Q ss_pred --hhh----HHHHHHhhccccc-cCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Q 005266 486 --AES----SSQAIDLIGPVYQ-MKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLT 558 (705)
Q Consensus 486 --~d~----~~~ALeli~~~~~-~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~ 558 (705)
... ...|++.+..... .|.+ +.+++.+|.++...|++++|..+++++|++. .++......+.
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~----~~~~~~~~~~~ 375 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDNL-------FRVCSILASLHALADQYEEAEYYFQKEFSKE----LTPVAKQLLHL 375 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTT-------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC----CCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCch-------hhhhhhHHHHHHHhccHHHHHHHHHHHHhcC----CCChHHHHHHH
Confidence 100 3444444433211 2321 3468899999999999999999999999873 13233334556
Q ss_pred HHHHH-HHHCCChHHHHHHHHHHHHHHHH------------------cCChhhHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 005266 559 ILGNL-ALALHDTVQAREILRSSLTLAKK------------------LYDIPTQIWALSVLTALYQQLGDRGNEMENDEY 619 (705)
Q Consensus 559 ~LG~i-~~~lg~~~qA~~~~~~Al~LArk------------------~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~ 619 (705)
.+|.+ +...|+.++|..+|++|+.+..+ +...+...+++..||.+|...|++++|.++|+.
T Consensus 376 ~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 376 RYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66665 45789999999999999875321 111223357788999999999999999999999
Q ss_pred HHHHHHH
Q 005266 620 RRKKLDE 626 (705)
Q Consensus 620 ~~~~~~~ 626 (705)
+.+....
T Consensus 456 ALe~~~~ 462 (472)
T 4g1t_A 456 GLESGSL 462 (472)
T ss_dssp -------
T ss_pred HHhcCCC
Confidence 8876554
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.64 E-value=2.7e-12 Score=133.29 Aligned_cols=324 Identities=11% Similarity=0.027 Sum_probs=231.5
Q ss_pred HHHHHHhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhh
Q 005266 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (705)
Q Consensus 5 ~~~L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dl 84 (705)
+..++.+|..+...+++..|+.|++.+++..|.. +.+...+|.+++ ..+++++|...+++++.+.+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~----- 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-----YIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFT----- 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCH-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-----HHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcc-----
Confidence 4678899999999999999999999999876621 346777777765 58999999999999998876665
Q ss_pred hhhHHHHHHHHHHHcCCChhHHHHHHHHHhhcc---ccccccccc--hhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 005266 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTS---SASQDVAVK--LWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (705)
Q Consensus 85 K~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~---~~~~~~~~~--~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~ 159 (705)
.+++.++.+|...|.+..|...++++++..+ ..++.+... .....-.+.+|.++...|++..|++.++.+...
T Consensus 72 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 149 (359)
T 3ieg_A 72 --AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149 (359)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999876 311111000 000011234588999999999999999998876
Q ss_pred HhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhh
Q 005266 160 ATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHH 239 (705)
Q Consensus 160 A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~ 239 (705)
++....+++.++.++..+ .+++++..
T Consensus 150 ----~~~~~~~~~~~~~~~~~~---~~~~~A~~----------------------------------------------- 175 (359)
T 3ieg_A 150 ----CVWDAELRELRAECFIKE---GEPRKAIS----------------------------------------------- 175 (359)
T ss_dssp ----CTTCHHHHHHHHHHHHHT---TCHHHHHH-----------------------------------------------
T ss_pred ----CCCchHHHHHHHHHHHHC---CCHHHHHH-----------------------------------------------
Confidence 666677777777766555 33222211
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCccc
Q 005266 240 VDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQ 319 (705)
Q Consensus 240 v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~ 319 (705)
.+++.++. .| .
T Consensus 176 --------------------------------------------------~~~~~~~~-~~---~--------------- 186 (359)
T 3ieg_A 176 --------------------------------------------------DLKAASKL-KS---D--------------- 186 (359)
T ss_dssp --------------------------------------------------HHHHHHTT-CS---C---------------
T ss_pred --------------------------------------------------HHHHHHHh-CC---C---------------
Confidence 11111222 00 0
Q ss_pred ccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHH
Q 005266 320 AWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWM 399 (705)
Q Consensus 320 ~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~ 399 (705)
.+-+++..+.++...|++++|.++++++++. .|.. ...|
T Consensus 187 -----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----------~~~~-------~~~~- 225 (359)
T 3ieg_A 187 -----------------------NTEAFYKISTLYYQLGDHELSLSEVRECLKL----------DQDH-------KRCF- 225 (359)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTC-------HHHH-
T ss_pred -----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------Cccc-------hHHH-
Confidence 1124555667777789999999999999875 2221 1223
Q ss_pred HHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHH
Q 005266 400 AGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHAYAAV 478 (705)
Q Consensus 400 ~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~-~~g~a~a~~nlal 478 (705)
..|. .+ ........+|..+...|++++|...|.++++..++ ......+..++|.
T Consensus 226 -~~~~--~~----------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 226 -AHYK--QV----------------------KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICH 280 (359)
T ss_dssp -HHHH--HH----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred -HHHH--HH----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 1111 00 01122346789999999999999999999999877 3444566788899
Q ss_pred HHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 479 SYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 479 v~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
++...|++++ +.+++++ .|++ +.+++.+|.++...|++++|..++++++++.
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~------~~~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQM------EPDN-------VNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHccCHHHHHHHHHHHHHh------Cccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999877 5666552 3432 5689999999999999999999999999884
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.61 E-value=7.7e-14 Score=146.88 Aligned_cols=322 Identities=11% Similarity=0.028 Sum_probs=214.1
Q ss_pred HHHhhcchHHHHH-HHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhH
Q 005266 54 LLKHTHNVNHAKS-HLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNF 132 (705)
Q Consensus 54 L~e~T~N~~~A~t-hLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f 132 (705)
-+...++++.|.. .+++++.+.+..| ......++.++.+|...|++..|...++++++..+ .+.. .
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~---~ 100 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENP---LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-------KHME---A 100 (368)
T ss_dssp ------------CHHHHCCCCCCSSCT---TTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-------TCHH---H
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCc---ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CCHH---H
Confidence 3456689999999 9998776655443 22345677899999999999999999999999876 3333 5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCccccccc
Q 005266 133 NSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQC 212 (705)
Q Consensus 133 ~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~ 212 (705)
++.+|.++...|++..|++.+++...+ ++....+++.++.++..+ .+++++...+.++.... |...
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~----~~~~--- 166 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLEL----KPDNQTALMALAVSFTNE---SLQRQACEILRDWLRYT----PAYA--- 166 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTS----TTTG---
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhC----cCcH---
Confidence 567899999999999999999998876 666778888888887666 55555554443332211 0000
Q ss_pred ccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHH
Q 005266 213 LGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQ 292 (705)
Q Consensus 213 ~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq 292 (705)
+. . ...+ .+.
T Consensus 167 -------~~-------------------------~-----------------------~~~~---------------~~~ 176 (368)
T 1fch_A 167 -------HL-------------------------V-----------------------TPAE---------------EGA 176 (368)
T ss_dssp -------GG-------------------------C-----------------------C---------------------
T ss_pred -------HH-------------------------H-----------------------HHHH---------------HHh
Confidence 00 0 0000 000
Q ss_pred HHHHhccCCCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 005266 293 QRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQ 372 (705)
Q Consensus 293 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~ 372 (705)
..... . ....+ .+.++ ..|++++|.++++++++
T Consensus 177 ~~~~~------~---------------------------~~~~~-------------~~~~~-~~~~~~~A~~~~~~a~~ 209 (368)
T 1fch_A 177 GGAGL------G---------------------------PSKRI-------------LGSLL-SDSLFLEVKELFLAAVR 209 (368)
T ss_dssp ------------------------------------------CT-------------THHHH-HHHHHHHHHHHHHHHHH
T ss_pred hhhcc------c---------------------------HHHHH-------------HHHHh-hcccHHHHHHHHHHHHH
Confidence 00000 0 00001 11222 55778888888888877
Q ss_pred HHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHH
Q 005266 373 TIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEA 452 (705)
Q Consensus 373 ~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA 452 (705)
. .|..+ .+.++..+|.++...|++++|
T Consensus 210 ~----------~p~~~-------------------------------------------~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 210 L----------DPTSI-------------------------------------------DPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp H----------STTSC-------------------------------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred h----------CcCcc-------------------------------------------cHHHHHHHHHHHHHcCCHHHH
Confidence 4 11100 111223678899999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcC
Q 005266 453 AFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD 528 (705)
Q Consensus 453 ~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~ 528 (705)
..+|.+++++.++. ..+..++|.++...|++++ +.+++++ .|+ .+.+++.+|.++...|+
T Consensus 237 ~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~-------~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 237 VDCFTAALSVRPND---YLLWNKLGATLANGNQSEEAVAAYRRALEL------QPG-------YIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT-------CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC-------cHHHHHHHHHHHHHCCC
Confidence 99999999997764 2468889999999999877 5666663 233 25689999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCHHHH-----HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 529 FQEARNRLAKGLQIAHNHMGNLQLV-----SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 529 ~~eA~~~L~eAL~la~~e~gn~~l~-----a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
+++|..++++++++. ....++... ..++..||.++..+|++++|.+.+++++...++.-+
T Consensus 301 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 365 (368)
T 1fch_A 301 HREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365 (368)
T ss_dssp HHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence 999999999999997 344333332 678999999999999999999999999998887644
No 24
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.60 E-value=5.7e-14 Score=135.34 Aligned_cols=172 Identities=12% Similarity=0.106 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccC
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMK 503 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~---~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~ 503 (705)
..+.++..+|.++...|++++|..+|.+|+.+.. +....+.+..++|.++...|++++ +.+++++.+...
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--- 100 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP--- 100 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC---
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC---
Confidence 3456677899999999999999999999999865 466788899999999999999877 788888766542
Q ss_pred CccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 504 DTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 504 ~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
++... .+.+++.+|.++...|++++|..+++++++++ +..+++...+.++..+|.++...|++++|.+++++|+.+
T Consensus 101 ~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 101 EDPLA---ASANAYEVATVALHFGDLAGARQEYEKSLVYA-QQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp CCHHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 12112 37799999999999999999999999999998 578999999999999999999999999999999999999
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHcCC
Q 005266 584 AKKLYDIPTQIWALSVLTALYQQLGD 609 (705)
Q Consensus 584 Ark~gD~~~q~~al~~L~~l~~~~Gd 609 (705)
+++.+|.++...++..++.+....|.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (203)
T 3gw4_A 177 FAELEDSEAVNELMTRLNGLEHHHHH 202 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCC----
T ss_pred HHHcCCHHHHHHHHhcccchhhcccC
Confidence 99999999999999998877654443
No 25
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.59 E-value=8.9e-14 Score=133.94 Aligned_cols=182 Identities=15% Similarity=0.041 Sum_probs=153.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHH
Q 005266 443 AHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFA 518 (705)
Q Consensus 443 ~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~ 518 (705)
+...|++++|...++.. .+++...+.+..++|.++...|++++ +.+++++.+..+. ... .+.+++.
T Consensus 2 ~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~---~~~~~~~ 71 (203)
T 3gw4_A 2 AFEAHDYALAERQAQAL---LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD----HTA---EHRALHQ 71 (203)
T ss_dssp -----CHHHHHHHHHHH---HTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC----HHH---HHHHHHH
T ss_pred ccccccHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC----cHH---HHHHHHH
Confidence 35689999999965543 23455678889999999999999877 7888887776532 222 4789999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 005266 519 YGLLLMRQQDFQEARNRLAKGLQIAHNHMG-NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWAL 597 (705)
Q Consensus 519 lG~~~~~~g~~~eA~~~L~eAL~la~~e~g-n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al 597 (705)
+|.++...|++++|..+++++++++. ..+ ++...+.++..+|.++...|++++|.+.+++++.++++.++.....+++
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 150 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAF 150 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHH-HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999995 677 6668899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 005266 598 SVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAY 635 (705)
Q Consensus 598 ~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~ 635 (705)
..+|.++...|++++|.+.++...+..+++.+....+.
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 188 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNE 188 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999988776665553
No 26
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.58 E-value=1.5e-13 Score=147.64 Aligned_cols=186 Identities=17% Similarity=0.082 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCc
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~---~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~ 505 (705)
...++..|.++...|++++|..+|.+|+++.. +....+.+..++|.+|...|+++. +.+|++++..... .
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---~ 177 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL---Y 177 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT---C
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC---c
Confidence 33566889999999999999999999998853 467788999999999999999877 7888887765411 1
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LAr 585 (705)
..+ .+.+++.+|.++...|++++|..++.+|++++ +..+++...+.++..||.+|..+|++++|.+++++|+.+++
T Consensus 178 ~~~---~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 178 SIR---TIQSLFVIAGNYDDFKHYDKALPHLEAALELA-MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp HHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhh---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 112 47899999999999999999999999999999 56899999999999999999999999999999999999999
Q ss_pred HcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 586 KLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 586 k~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
+.+++.. ..++..||.+|...|++++|.+.++.+.+..++
T Consensus 254 ~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 254 EKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred hhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999888 999999999999999999999999998887543
No 27
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.58 E-value=3e-13 Score=141.90 Aligned_cols=175 Identities=12% Similarity=0.001 Sum_probs=155.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhh
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~---~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~ 510 (705)
-.|.++...|++++|..+|.+|+.+.+ +....+.+..++|.+|...|++++ +.+|+++.... ++..+
T Consensus 41 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~----g~~~~-- 114 (307)
T 2ifu_A 41 KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN----GTPDT-- 114 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT----TCHHH--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc----CCHHH--
Confidence 347788899999999999999998853 466778899999999999999887 78999877654 33222
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 590 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~ 590 (705)
.+.++..+|.++.. |++++|+.++++|+.+. ...+++...+.++..+|.+|..+|++++|.+++++++.+..+.++.
T Consensus 115 -~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (307)
T 2ifu_A 115 -AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF-ENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY 191 (307)
T ss_dssp -HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 37799999999988 99999999999999998 5688888999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005266 591 PTQIWALSVLTALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 591 ~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
+....++..++.++...|++++|.++++.+.
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888899999999999999999999998876
No 28
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=5.4e-13 Score=136.20 Aligned_cols=231 Identities=18% Similarity=0.124 Sum_probs=182.6
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 005266 342 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 421 (705)
Q Consensus 342 ~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~ 421 (705)
..+.++...+.++...|++++|.++++++++..... +-.+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~----------------------------------- 65 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT----SGHDH----------------------------------- 65 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----HCSSS-----------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH----cCCCC-----------------------------------
Confidence 456778888999999999999999999999974331 10000
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHHHHhhCChhh----HHHH
Q 005266 422 SGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT-----ESKSMQAMCHAYAAVSYFCIGDAES----SSQA 492 (705)
Q Consensus 422 ~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~-----~~~~g~a~a~~nlalv~l~~gd~d~----~~~A 492 (705)
+..+.++..+|.++...|++++|..+|.+++.+. ++......+..++|.++...|++++ +.++
T Consensus 66 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 137 (311)
T 3nf1_A 66 --------PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 137 (311)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 0112233478999999999999999999999886 4456678889999999999999877 6777
Q ss_pred HHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHCCChH
Q 005266 493 IDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM-GNLQLVSQYLTILGNLALALHDTV 571 (705)
Q Consensus 493 Leli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~-gn~~l~a~aL~~LG~i~~~lg~~~ 571 (705)
+++...... ++... .+.+++.+|.++...|++++|..+++++++++.... ++....+.++..+|.+|...|+++
T Consensus 138 ~~~~~~~~~--~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 212 (311)
T 3nf1_A 138 LEIREKVLG--KDHPD---VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFK 212 (311)
T ss_dssp HHHHHHHHC--TTCHH---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhcC--CCChH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 776544310 11111 367899999999999999999999999999974321 334667789999999999999999
Q ss_pred HHHHHHHHHHHHHHHcC-------------------------------------------ChhhHHHHHHHHHHHHHHcC
Q 005266 572 QAREILRSSLTLAKKLY-------------------------------------------DIPTQIWALSVLTALYQQLG 608 (705)
Q Consensus 572 qA~~~~~~Al~LArk~g-------------------------------------------D~~~q~~al~~L~~l~~~~G 608 (705)
+|.+.++.++.++.+.+ +.+....++..||.+|...|
T Consensus 213 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g 292 (311)
T 3nf1_A 213 QAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQG 292 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCC
Confidence 99999999999876642 45677888999999999999
Q ss_pred CchHHHHHHHHHHHHH
Q 005266 609 DRGNEMENDEYRRKKL 624 (705)
Q Consensus 609 d~~~A~e~~~~~~~~~ 624 (705)
++++|.+.++.+.+..
T Consensus 293 ~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 293 KFEAAETLEEAAMRSR 308 (311)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887764
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.55 E-value=6.6e-11 Score=131.80 Aligned_cols=400 Identities=13% Similarity=0.024 Sum_probs=232.1
Q ss_pred cHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHh---hcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHH
Q 005266 20 EIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKH---THNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCY 96 (705)
Q Consensus 20 ~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~---T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y 96 (705)
....++..++.+.+..- +.+..++|.+++.- .+|+++|...|+++... +.+ .+++.|+.+|
T Consensus 22 ~~~~~~~~~~~~a~~g~-------~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~-------~a~~~Lg~~y 85 (490)
T 2xm6_A 22 LGNVNLEQLKQKAESGE-------AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYT-------PAEYVLGLRY 85 (490)
T ss_dssp ---CCHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH-------HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCH-------HHHHHHHHHH
Confidence 34455777887775433 45677778776652 77888888888888663 455 7888888888
Q ss_pred HH----cCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHhhcCCchH
Q 005266 97 HL----VGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFII----EGDYQSSISALQSGYVCATEISYPDL 168 (705)
Q Consensus 97 ~~----~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~----~~d~~~A~~~L~~~~~~A~~~~~~~~ 168 (705)
.. .++...|...++++++... .. -.+.+|.+|.. .+|+..|+..+++.... + ..
T Consensus 86 ~~g~g~~~~~~~A~~~~~~a~~~~~-------~~-----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~--~~ 147 (490)
T 2xm6_A 86 MNGEGVPQDYAQAVIWYKKAALKGL-------PQ-----AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----G--RD 147 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTC-------HH-----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T--CH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCC-------HH-----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----C--CH
Confidence 88 7778888888888877432 11 22346777877 78888888888886543 3 35
Q ss_pred HHHHHHHHHHHHhcc-cCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHH
Q 005266 169 QMFFATAILHVHLMQ-WDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAM 247 (705)
Q Consensus 169 ~~~~~La~~~~~L~~-~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l 247 (705)
...+.|+.++..-.. ..+++++...+.++-.. |.. ...+.|-.+...-.|- -++.+.++
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------------~~~------~a~~~Lg~~y~~g~g~-~~~~~~A~ 207 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------------GNV------WSCNQLGYMYSRGLGV-ERNDAISA 207 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------TCH------HHHHHHHHHHHHTSSS-CCCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------------CCH------HHHHHHHHHHhcCCCC-CcCHHHHH
Confidence 667777777765110 15666666666555321 111 1122222222111110 12233333
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCccccccccccc
Q 005266 248 KADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVL 327 (705)
Q Consensus 248 ~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 327 (705)
. -.++-++. -.
T Consensus 208 ~-----------------------------------------~~~~a~~~-----~~----------------------- 218 (490)
T 2xm6_A 208 Q-----------------------------------------WYRKSATS-----GD----------------------- 218 (490)
T ss_dssp H-----------------------------------------HHHHHHHT-----TC-----------------------
T ss_pred H-----------------------------------------HHHHHHHC-----CC-----------------------
Confidence 1 01111111 00
Q ss_pred CCCCcccccccchhhHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHH
Q 005266 328 APSPMDGEWLPKSAVYALVDLMVVILGR----PKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVY 403 (705)
Q Consensus 328 ~~~~l~~~WLpk~~~~aL~yll~~~~~~----~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~ 403 (705)
+.+++..+.++. ..+++++|.++++++.+. + . + . -..+.+.+|
T Consensus 219 ----------------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~---~-~--~---a~~~lg~~y 265 (490)
T 2xm6_A 219 ----------------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--------G---N-S--I---AQFRLGYIL 265 (490)
T ss_dssp ----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--------T---C-H--H---HHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------C---C-H--H---HHHHHHHHH
Confidence 011112222222 245666666666666542 0 0 0 0 011111111
Q ss_pred HHHHHHH-HhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 005266 404 LMLLMQF-LENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSV-----GCYSEAAFHYVEAAKITESKSMQAMCHAYAA 477 (705)
Q Consensus 404 ~~l~~~~-Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~-----g~~~eA~~~f~~Al~l~~~~~g~a~a~~nla 477 (705)
. .-.. ..+... ...-+..+.+...+.+.+.+|.++... +++++|...|++|++... ..+..++|
T Consensus 266 ~--~g~~~~~d~~~---A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg 335 (490)
T 2xm6_A 266 E--QGLAGAKEPLK---ALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD-----ATAQANLG 335 (490)
T ss_dssp H--HTTTSSCCHHH---HHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC-----HHHHHHHH
T ss_pred H--CCCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC-----HHHHHHHH
Confidence 0 0000 000000 001111222234456667888888887 999999999999987632 34688999
Q ss_pred HHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcccCHHHH
Q 005266 478 VSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNLQLV 553 (705)
Q Consensus 478 lv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~----~g~~~eA~~~L~eAL~la~~e~gn~~l~ 553 (705)
.+|...|.......|++.++..... + -+.+++.+|.++.. .+++++|..++++|+.. ++
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~-~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~---- 398 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAK-G-------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-----GL---- 398 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHT-T-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TC----
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHC-C-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-----CC----
Confidence 9998866443455555555544221 2 15689999999999 89999999999998543 34
Q ss_pred HHHHHHHHHHHHH----CCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 005266 554 SQYLTILGNLALA----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQ 605 (705)
Q Consensus 554 a~aL~~LG~i~~~----lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~ 605 (705)
..++..||.+|.. .++.++|.+.|++|+..-. +.+.-..+...|+.++.
T Consensus 399 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~---~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 399 SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM---NLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---CCcCCHHHHHHHHhcCH
Confidence 4588999999999 8999999999999987741 11223445556666544
No 30
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.55 E-value=5.3e-13 Score=133.80 Aligned_cols=183 Identities=20% Similarity=0.140 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCc
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKIT-----ESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~-----~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~ 505 (705)
++..+|.++...|++++|+.+|.+|+++. ++......+..++|.++...|++++ +.+++++....+. +++
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 123 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-KFH 123 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC-CCC
Confidence 34478999999999999999999999986 4456778899999999999999877 7888887655422 111
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM-GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~-gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
.. .+.+++.+|.++...|++++|..+++++++++.+.. .+....+.++..+|.+|...|++++|.+.++.++.++
T Consensus 124 -~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 124 -PD---VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp -HH---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -hH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 367999999999999999999999999999974321 2346677899999999999999999999999999997
Q ss_pred HHcC-------------------------------------------ChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005266 585 KKLY-------------------------------------------DIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 585 rk~g-------------------------------------------D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
.+.+ +.+....++..||.+|...|++++|.+.++...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7643 457778889999999999999999999988766
Q ss_pred H
Q 005266 622 K 622 (705)
Q Consensus 622 ~ 622 (705)
+
T Consensus 280 ~ 280 (283)
T 3edt_B 280 R 280 (283)
T ss_dssp T
T ss_pred H
Confidence 4
No 31
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.55 E-value=3.5e-12 Score=131.30 Aligned_cols=154 Identities=15% Similarity=0.164 Sum_probs=108.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHH
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEA 513 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA 513 (705)
.+|.++...|++++|..+|.++++..++. ..+..++|.++...|++++ +.+++++......... ... .+
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~---~~ 236 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIAPED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT-VDK---WE 236 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT-TTT---CC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc-ccH---HH
Confidence 35666677777777777777777766553 2446667777777777655 5555554433211100 000 24
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 593 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q 593 (705)
.+++.+|.++...|++++|..++++++++. .. + ..++..+|.++...|++++|.+.++.++.+. ++ .
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~---~ 303 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQ--N----ASTYSAIGYIHSLMGNFENAVDYFHTALGLR---RD---D 303 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT--C----SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC---SC---C
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-cc--c----hHHHHHHHHHHHHhccHHHHHHHHHHHHccC---CC---c
Confidence 589999999999999999999999999885 21 2 3578899999999999999999999998653 22 3
Q ss_pred HHHHHHHHHHH-HHcCCch
Q 005266 594 IWALSVLTALY-QQLGDRG 611 (705)
Q Consensus 594 ~~al~~L~~l~-~~~Gd~~ 611 (705)
..+...|+.++ ...|+.+
T Consensus 304 ~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 304 TFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHTTTTC--
T ss_pred hHHHHHHHHHHHHHhCchh
Confidence 55667788877 6777754
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.54 E-value=9.8e-12 Score=138.53 Aligned_cols=373 Identities=12% Similarity=0.005 Sum_probs=238.4
Q ss_pred HHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHH----cCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHH
Q 005266 65 KSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHL----VGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAF 140 (705)
Q Consensus 65 ~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~----~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~ 140 (705)
...++++.. ++.+ .+++.|+.+|.. .+++..|...++++++... .. -.+.+|.+|
T Consensus 27 ~~~~~~~a~--~g~~-------~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~---------~~---a~~~Lg~~y 85 (490)
T 2xm6_A 27 LEQLKQKAE--SGEA-------KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGY---------TP---AEYVLGLRY 85 (490)
T ss_dssp HHHHHHHHH--TTCH-------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---------HH---HHHHHHHHH
T ss_pred HHHHHHHHH--CCCH-------HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---------HH---HHHHHHHHH
Confidence 444555433 4566 889999999999 7888999999999998532 11 345579999
Q ss_pred hh----cCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcc-cCChhHHHHHHHHhHHHhhhcCcccccccccc
Q 005266 141 II----EGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQ-WDDENSVLRSINQCDRVWESIDPNRRGQCLGL 215 (705)
Q Consensus 141 ~~----~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~-~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~ 215 (705)
.. .+|+..|++.|++.+.. + .....+.|+.++..-.- ..+++++...+.++-.. |.
T Consensus 86 ~~g~g~~~~~~~A~~~~~~a~~~----~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------~~ 146 (490)
T 2xm6_A 86 MNGEGVPQDYAQAVIWYKKAALK----G--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------------GR 146 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------TC
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----C--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------------CC
Confidence 98 99999999999997653 4 34566778888776210 16777887777665221 21
Q ss_pred hhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHH
Q 005266 216 LFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRL 295 (705)
Q Consensus 216 ~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i 295 (705)
. + ..+.|-.+ |....++. ....++++-.++-+
T Consensus 147 ~---~---a~~~Lg~~--------------------------------------y~~g~g~~----~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 147 D---S---GQQSMGDA--------------------------------------YFEGDGVT----RDYVMAREWYSKAA 178 (490)
T ss_dssp H---H---HHHHHHHH--------------------------------------HHHTSSSC----CCHHHHHHHHHHHH
T ss_pred H---H---HHHHHHHH--------------------------------------HHcCCCCC----CCHHHHHHHHHHHH
Confidence 1 1 11110000 11100000 00022222333322
Q ss_pred HhccCCCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcC----CCChHHHHHHHHHHH
Q 005266 296 RSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRP----KGLFKECMQRIQSGM 371 (705)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~----~g~~~ka~k~l~~al 371 (705)
+. ..+.+++..+.++.. .+++++|.++++++.
T Consensus 179 ~~--------------------------------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 214 (490)
T 2xm6_A 179 EQ--------------------------------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSA 214 (490)
T ss_dssp HT--------------------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HC--------------------------------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 22 123445555555655 789999999999998
Q ss_pred HHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHH-HHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHH----c
Q 005266 372 QTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQ-FLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHS----V 446 (705)
Q Consensus 372 ~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~-~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~----~ 446 (705)
+. + . + . -..+.+.+|. .-. ...+.... ..-+..+.+...+.+.+.+|.++.. .
T Consensus 215 ~~--------~---~-~--~---a~~~lg~~y~--~g~g~~~~~~~A---~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~ 272 (490)
T 2xm6_A 215 TS--------G---D-E--L---GQLHLADMYY--FGIGVTQDYTQS---RVLFSQSAEQGNSIAQFRLGYILEQGLAGA 272 (490)
T ss_dssp HT--------T---C-H--H---HHHHHHHHHH--HTSSSCCCHHHH---HHHHHHHHTTTCHHHHHHHHHHHHHTTTSS
T ss_pred HC--------C---C-H--H---HHHHHHHHHH--cCCCCCCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
Confidence 73 1 0 0 0 0111111111 000 00000000 1112233344667888999999999 9
Q ss_pred CCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhh-----CChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHH
Q 005266 447 GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI-----GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGL 521 (705)
Q Consensus 447 g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~-----gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~ 521 (705)
+++++|...|++|++.. ...+..+++.+|... +|++. |+..+..... .+ -+.+++.+|.
T Consensus 273 ~d~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~~~~g~~~~~~~---A~~~~~~a~~-~~-------~~~a~~~lg~ 336 (490)
T 2xm6_A 273 KEPLKALEWYRKSAEQG-----NSDGQYYLAHLYDKGAEGVAKNREQ---AISWYTKSAE-QG-------DATAQANLGA 336 (490)
T ss_dssp CCHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHCBTTBCCCHHH---HHHHHHHHHH-TT-------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCCcCCHHH---HHHHHHHHHh-cC-------CHHHHHHHHH
Confidence 99999999999998652 234688899999875 55544 3333322211 12 1568999999
Q ss_pred HHHHhc---CHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH----CCChHHHHHHHHHHHHHHHHcCChhhHH
Q 005266 522 LLMRQQ---DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA----LHDTVQAREILRSSLTLAKKLYDIPTQI 594 (705)
Q Consensus 522 ~~~~~g---~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~----lg~~~qA~~~~~~Al~LArk~gD~~~q~ 594 (705)
++...| ++++|..++++|++. ++ ..++..||.+|.. .+++++|.+++++|... ++ .
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~ 399 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAK-----GE----KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----GL----S 399 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHT-----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----H
T ss_pred HHHhCCCcccHHHHHHHHHHHHHC-----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----CC----H
Confidence 998866 899999999998543 44 3688999999999 89999999999998763 44 5
Q ss_pred HHHHHHHHHHHH----cCCchHHHHHHHHHHHHH
Q 005266 595 WALSVLTALYQQ----LGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 595 ~al~~L~~l~~~----~Gd~~~A~e~~~~~~~~~ 624 (705)
.+...||.+|.. .||+++|.++++.+.+..
T Consensus 400 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 677889999998 899999999999988765
No 33
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.53 E-value=6.8e-13 Score=139.64 Aligned_cols=166 Identities=16% Similarity=0.126 Sum_probs=132.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHH
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEA 513 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA 513 (705)
.+|.++ ..|++++|...|.+++++.++.. ...+..++|.++...|++++ +.+++++ .|++ +
T Consensus 187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~-------~ 251 (368)
T 1fch_A 187 ILGSLL-SDSLFLEVKELFLAAVRLDPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV------RPND-------Y 251 (368)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHHHHSTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC-------H
T ss_pred HHHHHh-hcccHHHHHHHHHHHHHhCcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCC-------H
Confidence 567776 89999999999999999977632 34567889999999999877 5666652 2332 5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 593 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q 593 (705)
.+++.+|.++...|++++|...+++++++. . .+ ..++..+|.+|...|++++|.+.++.++.+..+..+..+.
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-P--GY----IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--Cc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 689999999999999999999999999884 2 22 3578999999999999999999999999998877544332
Q ss_pred -----HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 594 -----IWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 594 -----~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
..+...|+.+|...|+++.|...+....+...
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 56677899999999999999998887666554
No 34
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.50 E-value=1.2e-11 Score=127.33 Aligned_cols=200 Identities=15% Similarity=0.151 Sum_probs=155.5
Q ss_pred HHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhh
Q 005266 346 VDLMVVILGRPKG-LFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (705)
Q Consensus 346 ~yll~~~~~~~~g-~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~ 424 (705)
+++..+.++...| .+++|.+++++++.. .|.. ...|
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----------~~~~-------~~~~-------------------------- 128 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTL----------EKTY-------GPAW-------------------------- 128 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTT----------CTTC-------THHH--------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh----------CCcc-------HHHH--------------------------
Confidence 4455667778888 899999999998874 1110 1122
Q ss_pred HHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhcccc
Q 005266 425 VEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVY 500 (705)
Q Consensus 425 ~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~ 500 (705)
..+|.++...|++++|..+|.+++++.++.. .+..++|.++...|++++ +.++++
T Consensus 129 ------------~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~------ 187 (330)
T 3hym_B 129 ------------IAYGHSFAVESEHDQAMAAYFTAAQLMKGCH---LPMLYIGLEYGLTNNSKLAERFFSQALS------ 187 (330)
T ss_dssp ------------HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHT------
T ss_pred ------------HHHHHHHHHccCHHHHHHHHHHHHHhccccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 2668888999999999999999999977632 336678999999999876 444444
Q ss_pred ccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCH---HHHHHHHHHHHHHHHHCCChHHHHHHH
Q 005266 501 QMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL---QLVSQYLTILGNLALALHDTVQAREIL 577 (705)
Q Consensus 501 ~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~---~l~a~aL~~LG~i~~~lg~~~qA~~~~ 577 (705)
..|++ +.+++.+|.++...|++++|...+++++++. ...++. ...+.++..+|.++...|++++|.+.+
T Consensus 188 ~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 188 IAPED-------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKI-KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp TCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHh-hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 23432 5689999999999999999999999999997 345543 222568999999999999999999999
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 578 RSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 578 ~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
+.++.+... ...++..+|.+|...|++++|.+.++...+.
T Consensus 260 ~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 260 RQALVLIPQ------NASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHSTT------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHhhCcc------chHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999987422 3556778999999999999999988766543
No 35
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.48 E-value=4.5e-12 Score=134.06 Aligned_cols=283 Identities=10% Similarity=-0.004 Sum_probs=194.5
Q ss_pred hHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCc
Q 005266 87 RTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYP 166 (705)
Q Consensus 87 ~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~ 166 (705)
..++.++.+|+..|++..|...++++++..+ .+.. .++.+|.++...|++..|++.+++...+ ++.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~ 131 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP-------GDAE---AWQFLGITQAENENEQAAIVALQRCLEL----QPN 131 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-------CCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCC
Confidence 4577889999999999999999999998876 3333 5567899999999999999999998876 666
Q ss_pred hHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHHH
Q 005266 167 DLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAA 246 (705)
Q Consensus 167 ~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~ 246 (705)
...+++.++.++..+ .+++++...+.++..+-
T Consensus 132 ~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~--------------------------------------------- 163 (365)
T 4eqf_A 132 NLKALMALAVSYTNT---SHQQDACEALKNWIKQN--------------------------------------------- 163 (365)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHC---------------------------------------------
T ss_pred CHHHHHHHHHHHHcc---ccHHHHHHHHHHHHHhC---------------------------------------------
Confidence 778888888877666 55544443332221110
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccccccccc
Q 005266 247 MKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLV 326 (705)
Q Consensus 247 l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 326 (705)
|.+...
T Consensus 164 -----------------------------------------------------p~~~~~--------------------- 169 (365)
T 4eqf_A 164 -----------------------------------------------------PKYKYL--------------------- 169 (365)
T ss_dssp -----------------------------------------------------HHHHCC---------------------
T ss_pred -----------------------------------------------------ccchHH---------------------
Confidence 000000
Q ss_pred cCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHH
Q 005266 327 LAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLML 406 (705)
Q Consensus 327 ~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l 406 (705)
...+. ..+.++...+.++...|++++|.++++++++. .|... +
T Consensus 170 -------~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~p~~~--~--------------- 212 (365)
T 4eqf_A 170 -------VKNKK---GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ----------NGDMI--D--------------- 212 (365)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHHH----------SCSSC--C---------------
T ss_pred -------Hhhhc---cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh----------CcCcc--C---------------
Confidence 00000 01112223356677889999999999999885 11100 0
Q ss_pred HHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCCh
Q 005266 407 LMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 486 (705)
Q Consensus 407 ~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~ 486 (705)
+.+++.+|.++...|++++|..+|.+++++.++. ..+..++|.++...|++
T Consensus 213 --------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 213 --------------------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED---YSLWNRLGATLANGDRS 263 (365)
T ss_dssp --------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCH
T ss_pred --------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCH
Confidence 1112367888999999999999999999997764 34688899999999998
Q ss_pred hh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCH------HHHHHH
Q 005266 487 ES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL------QLVSQY 556 (705)
Q Consensus 487 d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~------~l~a~a 556 (705)
++ +.+++++ .|++ +.+++.+|.++...|++++|..++++++++. ....++ ...+.+
T Consensus 264 ~~A~~~~~~al~~------~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~ 329 (365)
T 4eqf_A 264 EEAVEAYTRALEI------QPGF-------IRSRYNLGISCINLGAYREAVSNFLTALSLQ-RKSRNQQQVPHPAISGNI 329 (365)
T ss_dssp HHHHHHHHHHHHH------CTTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HCC------------CHH
T ss_pred HHHHHHHHHHHhc------CCCc-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccCCCcccchhhhHHHH
Confidence 77 5666663 3442 5689999999999999999999999999997 344332 234678
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 005266 557 LTILGNLALALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 557 L~~LG~i~~~lg~~~qA~~~~~~Al~LAr 585 (705)
+..||.++..+|+.+.+.++..+++...+
T Consensus 330 ~~~l~~~~~~~g~~~~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 330 WAALRIALSLMDQPELFQAANLGDLDVLL 358 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTCCGGGT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhHHHHH
Confidence 89999999999999999888777655443
No 36
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.48 E-value=5.6e-10 Score=118.62 Aligned_cols=317 Identities=11% Similarity=0.020 Sum_probs=212.4
Q ss_pred hhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 005266 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (705)
Q Consensus 83 dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~ 162 (705)
+++-.+...++.++...|+++.+...++++++..+. + ...+.....+.++.++...|++..|.+.+++...++..
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 85 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP---G--WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 85 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---T--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---C--chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh
Confidence 455567788899999999999999999999987652 1 11223335567899999999999999999999998877
Q ss_pred cCCchHH--HHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhh
Q 005266 163 ISYPDLQ--MFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHV 240 (705)
Q Consensus 163 ~~~~~~~--~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v 240 (705)
.+++... +.+.++.++... .+++++...+.++
T Consensus 86 ~~~~~~~~~~~~~la~~~~~~---G~~~~A~~~~~~a------------------------------------------- 119 (373)
T 1hz4_A 86 HDVWHYALWSLIQQSEILFAQ---GFLQTAWETQEKA------------------------------------------- 119 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHH-------------------------------------------
T ss_pred cCcHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHH-------------------------------------------
Confidence 7765432 233344433322 3322222111100
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCcccc
Q 005266 241 DNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQA 320 (705)
Q Consensus 241 ~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (705)
+ ..... ..+
T Consensus 120 ------l---------------------------------------------~~~~~-----~~~--------------- 128 (373)
T 1hz4_A 120 ------F---------------------------------------------QLINE-----QHL--------------- 128 (373)
T ss_dssp ------H---------------------------------------------HHHHH-----TTC---------------
T ss_pred ------H---------------------------------------------HHHHH-----hcc---------------
Confidence 1 00111 000
Q ss_pred cccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHH
Q 005266 321 WGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMA 400 (705)
Q Consensus 321 ~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~ 400 (705)
+.....+.++...+.++...|++++|..++++++... ...+ . ....
T Consensus 129 -----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~---------~-~~~~--- 174 (373)
T 1hz4_A 129 -----------------EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL----SSYQ---------P-QQQL--- 174 (373)
T ss_dssp -----------------TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTSC---------G-GGGH---
T ss_pred -----------------ccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----hccC---------c-HHHH---
Confidence 0001134556667778888999999999999999861 1111 0 0000
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChh--HHHHHH--HHH
Q 005266 401 GVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--MQAMCH--AYA 476 (705)
Q Consensus 401 ~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~--g~a~a~--~nl 476 (705)
.++..+|.++...|++++|..+|.+++.+.+... ....+. ...
T Consensus 175 ---------------------------------~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 221 (373)
T 1hz4_A 175 ---------------------------------QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 221 (373)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHH
Confidence 1223678899999999999999999998854421 112222 234
Q ss_pred HHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHH
Q 005266 477 AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQY 556 (705)
Q Consensus 477 alv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~a 556 (705)
+.++...|++++....++-.... .+++... ....+..+|.++..+|++++|...+++++..+ ...|++.....+
T Consensus 222 ~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~-~~~~~~~~~~~~ 295 (373)
T 1hz4_A 222 VIYWQMTGDKAAAANWLRHTAKP--EFANNHF---LQGQWRNIARAQILLGEFEPAEIVLEELNENA-RSLRLMSDLNRN 295 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--CCTTCGG---GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCCC--CCCcchh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCcchhhHHHH
Confidence 55577889987744433332221 1221111 13357888999999999999999999999998 467877777789
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHH
Q 005266 557 LTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 594 (705)
Q Consensus 557 L~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~ 594 (705)
+..+|.++...|++++|.+.+++++.++...|......
T Consensus 296 ~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~ 333 (373)
T 1hz4_A 296 LLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 333 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHH
Confidence 99999999999999999999999999999988765433
No 37
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.48 E-value=1.3e-12 Score=135.96 Aligned_cols=181 Identities=10% Similarity=-0.013 Sum_probs=152.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhc---CChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhh
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKIT---ESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~---~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~ 510 (705)
-.|.++...|++++|..+|.+|+.+. +++...+.+..|+|.+|...|++++ +.+|+++.... ++..+
T Consensus 42 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~----g~~~~-- 115 (292)
T 1qqe_A 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR----GQFRR-- 115 (292)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHH--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc----CCHHH--
Confidence 34778899999999999999999985 4566778899999999999999987 78888876554 33222
Q ss_pred hHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 511 EEASLHFAYGLLLMRQ-QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~-g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
.+.++..+|.++..+ |++++|..++++|+++. ...+++...+.++..+|.++..+|++++|.+++++++.+....++
T Consensus 116 -~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 116 -GANFKFELGEILENDLHDYAKAIDCYELAGEWY-AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp -HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred -HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 267999999999996 99999999999999998 567787788889999999999999999999999999998877766
Q ss_pred h-hhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 590 I-PTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 590 ~-~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
. +....++..+|.+|...|++++|.++++.+.++..+
T Consensus 194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4 355567888999999999999999999888765443
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.47 E-value=4.1e-11 Score=123.10 Aligned_cols=291 Identities=10% Similarity=0.025 Sum_probs=200.3
Q ss_pred hhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCC
Q 005266 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISY 165 (705)
Q Consensus 86 ~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~ 165 (705)
...++.++.+|...|++..|...++++++..+ .+.. .++.+|.++...|++..|+..+++.... ++
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~---~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~ 86 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAP-------EREE---AWRSLGLTQAENEKDGLAIIALNHARML----DP 86 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------CCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhc----Cc
Confidence 35667889999999999999999999998776 3333 4556899999999999999999998876 66
Q ss_pred chHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhHH
Q 005266 166 PDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDA 245 (705)
Q Consensus 166 ~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~ 245 (705)
....+++.++.++... .+++++...+.++..
T Consensus 87 ~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~---------------------------------------------- 117 (327)
T 3cv0_A 87 KDIAVHAALAVSHTNE---HNANAALASLRAWLL---------------------------------------------- 117 (327)
T ss_dssp TCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH----------------------------------------------
T ss_pred CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH----------------------------------------------
Confidence 6777787788777555 444444333322211
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCccccccccc
Q 005266 246 AMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKL 325 (705)
Q Consensus 246 ~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 325 (705)
. .|.+......+...
T Consensus 118 ---------------------------------------------------~-~~~~~~~~~~~~~~------------- 132 (327)
T 3cv0_A 118 ---------------------------------------------------S-QPQYEQLGSVNLQA------------- 132 (327)
T ss_dssp ---------------------------------------------------T-STTTTTC--------------------
T ss_pred ---------------------------------------------------h-CCccHHHHHHHhHH-------------
Confidence 1 11000000000000
Q ss_pred ccCCCCcccccccchhhHHHHHHHHHH-HhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHH
Q 005266 326 VLAPSPMDGEWLPKSAVYALVDLMVVI-LGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYL 404 (705)
Q Consensus 326 ~~~~~~l~~~WLpk~~~~aL~yll~~~-~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~ 404 (705)
.+......|+. +. ++...|++++|.++++++++. .|.
T Consensus 133 --~~~~~~~~~~~------------~~~~~~~~~~~~~A~~~~~~~~~~----------~~~------------------ 170 (327)
T 3cv0_A 133 --DVDIDDLNVQS------------EDFFFAAPNEYRECRTLLHAALEM----------NPN------------------ 170 (327)
T ss_dssp ---------------------------CCTTSHHHHHHHHHHHHHHHHH----------STT------------------
T ss_pred --HHHHHHHHHHH------------HhHHHHHcccHHHHHHHHHHHHhh----------CCC------------------
Confidence 00000011111 12 466778888999888888774 111
Q ss_pred HHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhC
Q 005266 405 MLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 484 (705)
Q Consensus 405 ~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~g 484 (705)
.+.+...+|.++...|++++|..+|.++++..++. ..+..++|.++...|
T Consensus 171 ---------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 171 ---------------------------DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD---AQLWNKLGATLANGN 220 (327)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTT
T ss_pred ---------------------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcC
Confidence 01122367888899999999999999999987653 245788899999999
Q ss_pred Chhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHH------HH
Q 005266 485 DAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL------VS 554 (705)
Q Consensus 485 d~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l------~a 554 (705)
++++ +.++++. .|++ ..+++.+|.++...|++++|..++++++++. ....+... ..
T Consensus 221 ~~~~A~~~~~~a~~~------~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~ 286 (327)
T 3cv0_A 221 RPQEALDAYNRALDI------NPGY-------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATR 286 (327)
T ss_dssp CHHHHHHHHHHHHHH------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHH
T ss_pred CHHHHHHHHHHHHHc------CCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCH
Confidence 9877 5555552 2331 5589999999999999999999999999997 33333333 56
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh
Q 005266 555 QYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 590 (705)
Q Consensus 555 ~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~ 590 (705)
.++..+|.++...|+.++|.+.+++++...++..+.
T Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 322 (327)
T 3cv0_A 287 SMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGL 322 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhhH
Confidence 789999999999999999999999999988876553
No 39
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.46 E-value=1.8e-12 Score=118.33 Aligned_cols=155 Identities=20% Similarity=0.142 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhh
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
.+.++..+|.++...|++++|..+|.+|+++.++.. + ...
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----------------~--------------------~~~--- 47 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-----------------D--------------------KAA--- 47 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----------------C--------------------HHH---
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC-----------------C--------------------chH---
Confidence 456778899999999999999999999988744211 1 001
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
.+.+++.+|.++...|++++|..++.++++++. ..+++...+.++..+|.++...|++++|.+.++.++.++++.++.+
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 126 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR-QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 126 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchH
Confidence 145677778888888888888888888888884 5777788888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Q 005266 592 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDEL 627 (705)
Q Consensus 592 ~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l 627 (705)
...+++..++.+|...|++++|.+.++...+..+++
T Consensus 127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888888888888877776543
No 40
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=8.5e-12 Score=127.27 Aligned_cols=190 Identities=14% Similarity=0.027 Sum_probs=161.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE-----SKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQ 501 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~-----~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~ 501 (705)
..+.++..+|.++...|++++|..+|.+++++.. +....+.+..++|.++...|++++ +.+++++......
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 5567778999999999999999999999998743 355667889999999999999877 6777776544311
Q ss_pred cCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005266 502 MKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM--GNLQLVSQYLTILGNLALALHDTVQAREILRS 579 (705)
Q Consensus 502 ~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~--gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~ 579 (705)
++... .+.+++.+|.++...|++++|..++++++++.. .. ++....+.++..+|.++...|++++|.++++.
T Consensus 105 --~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 105 --KDHPA---VAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE-KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp --TTCHH---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred --CCChH---HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11111 367899999999999999999999999999984 34 55577888999999999999999999999999
Q ss_pred HHHHHHHc--CChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 580 SLTLAKKL--YDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 580 Al~LArk~--gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
++.++++. ++.+....+...++.+|...|++++|.+.++...+...+
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999998 667788889999999999999999999999998887654
No 41
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.45 E-value=4.9e-12 Score=115.40 Aligned_cols=115 Identities=21% Similarity=0.174 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
+.+++.+|.++...|++++|..+++++++++. ..+++...+.++..+|.++...|++++|.+.+++++.++++.++...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-EFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 67899999999999999999999999999994 69999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Q 005266 593 QIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 628 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~ 628 (705)
...++..+|.++...|++++|.+.++...+..++..
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 123 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999998876553
No 42
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.43 E-value=1.9e-11 Score=126.80 Aligned_cols=187 Identities=8% Similarity=-0.086 Sum_probs=153.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchh
Q 005266 437 MLRGQYAHSVGCYSEAAFHYVEAAKITESK---SMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 437 ~llG~~~~~~g~~~eA~~~f~~Al~l~~~~---~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~ 509 (705)
.-.+..+...|++++|...|.++++..+.. ........+++.++...|++++ +.+|+++.... .+..+
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~- 153 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG----IDVYQ- 153 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS----SCTTH-
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC----CchHH-
Confidence 356778899999999999999999886542 2344556678888888889776 56666643332 22222
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
.+.+++.+|.++..+|++++|..++.+|++++.....++...+.++..+|.+|..+|++++|.+++++|+.++++.++
T Consensus 154 --~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 154 --NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 367999999999999999999999999999985434455556689999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCchHH-HHHHHHHHHHHHHHHHH
Q 005266 590 IPTQIWALSVLTALYQQLGDRGNE-MENDEYRRKKLDELQKR 630 (705)
Q Consensus 590 ~~~q~~al~~L~~l~~~~Gd~~~A-~e~~~~~~~~~~~l~~~ 630 (705)
......++..+|.+|...|++++| .++++.+..+.+.+...
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~ 273 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH 273 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcH
Confidence 988899999999999999999999 88899998888765543
No 43
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=9.9e-12 Score=132.24 Aligned_cols=184 Identities=17% Similarity=0.070 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES--KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~--~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
+.++..+|.++...|++++|...|.+|+...+. ....+.+..+++.++...|+++. +.+++++.... ++.
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~ 89 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH----DVW 89 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT----TCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc----CcH
Confidence 456678899999999999999999999998754 34567788999999999999877 67777765543 222
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCH--HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL--QLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~--~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
.+ .+.+++.+|.++..+|++++|..+++++++++. +.+++ ...+.++..+|.++...|++++|..++++++.++
T Consensus 90 ~~---~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 90 HY---ALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN-EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 22 367899999999999999999999999999984 56664 5677889999999999999999999999999999
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 585 KKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 585 rk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
++.++.. ...++..++.++...|++++|.+.++.......
T Consensus 166 ~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 166 SSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205 (373)
T ss_dssp TTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred hccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 9988765 668888999999999999999999888776643
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.41 E-value=5.1e-12 Score=125.75 Aligned_cols=190 Identities=13% Similarity=0.059 Sum_probs=140.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhh
Q 005266 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (705)
Q Consensus 345 L~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~ 424 (705)
-+++..+..+...|++++|..+++++++. .|.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~-------------------------------------- 37 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKE----------NPQ-------------------------------------- 37 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT----------SSS--------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCC--------------------------------------
Confidence 35666777888888888888888887764 222
Q ss_pred HHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhh-----------CChhh----H
Q 005266 425 VEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI-----------GDAES----S 489 (705)
Q Consensus 425 ~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~-----------gd~d~----~ 489 (705)
.+.+++.+|.++...|++++|+..|++++++.++.. .+..++|.++... |++++ +
T Consensus 38 -------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~ 107 (217)
T 2pl2_A 38 -------DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL---GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVL 107 (217)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHH
Confidence 122334779999999999999999999999988743 4578889999988 88766 5
Q ss_pred HHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCC
Q 005266 490 SQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD 569 (705)
Q Consensus 490 ~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~ 569 (705)
.++++ ..|++ +.+++.+|.++...|++++|...+++++++. .+ ..++..+|.++...|+
T Consensus 108 ~~al~------~~P~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~----~~~~~~la~~~~~~g~ 166 (217)
T 2pl2_A 108 KDAER------VNPRY-------APLHLQRGLVYALLGERDKAEASLKQALALE----DT----PEIRSALAELYLSMGR 166 (217)
T ss_dssp HHHHH------HCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHHHTC
T ss_pred HHHHH------hCccc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----cc----hHHHHHHHHHHHHcCC
Confidence 66666 23442 6689999999999999999999999999883 33 2467899999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 005266 570 TVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEY 619 (705)
Q Consensus 570 ~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~ 619 (705)
+++|...|++++.+. ++ ...+...++.++...|++++|.+.++.
T Consensus 167 ~~~A~~~~~~al~~~---P~---~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 167 LDEALAQYAKALEQA---PK---DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHHS---TT---CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHhC---CC---ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999762 22 356677899999999999999886653
No 45
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.40 E-value=3.4e-11 Score=124.87 Aligned_cols=184 Identities=8% Similarity=-0.071 Sum_probs=152.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCh-hHH--HHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhh
Q 005266 439 RGQYAHSVGCYSEAAFHYVEAAKITESK-SMQ--AMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 439 lG~~~~~~g~~~eA~~~f~~Al~l~~~~-~g~--a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
....+...|++++|...|.+++...+.. ... .....+++.++...|++++ +.+|+++..+. ++..+
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~----~~~~~--- 153 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG----IDVYQ--- 153 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC----SCTTH---
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc----ccHHH---
Confidence 3567788999999999999998865542 212 3344557888877788766 67777743332 22222
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
.+.+++.+|.++...|++++|..++.+|++....-.++....+.++..+|.+|..+|++++|.++++.|+.++++.++..
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 37789999999999999999999999999998532278899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHH
Q 005266 592 TQIWALSVLTALYQQLGDR-GNEMENDEYRRKKLDELQK 629 (705)
Q Consensus 592 ~q~~al~~L~~l~~~~Gd~-~~A~e~~~~~~~~~~~l~~ 629 (705)
....++..+|.+|...|+. ++|.+.++.+..+.+.+..
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999965 9999999999999886544
No 46
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.37 E-value=1.8e-11 Score=128.40 Aligned_cols=174 Identities=16% Similarity=0.067 Sum_probs=144.4
Q ss_pred HHcCCHHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhh
Q 005266 444 HSVGCYSEAAFHYVEAAKITE--------SKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 444 ~~~g~~~eA~~~f~~Al~l~~--------~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
|+.|++++|..++.+|.+... +...-......++.+|...|++++ +.+|+++.... ++..+
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~--- 74 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN----RSLFH--- 74 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHH---
T ss_pred CccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----CCHHH---
Confidence 456788888888888776432 112223345555778888899877 78888866554 23222
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
.+.+|..+|.++..+|++++|..++++|+.+. .+.|++...+.++..+|.+|.. |++++|.++|++|+.+.++.++..
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~ 152 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY-VENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR 152 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence 37799999999999999999999999999998 5799999999999999999999 999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 592 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 592 ~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
....++..+|.+|...|++++|.+.++...+....
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999887653
No 47
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.37 E-value=2.1e-11 Score=126.56 Aligned_cols=150 Identities=11% Similarity=0.078 Sum_probs=129.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhh
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~---~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~ 510 (705)
.+|.++...|++++|..+|.+|+.+... ..+.+.+..++|.+|...|+++. +.+|++.+... +++...
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---~~~~~~-- 194 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL---HDNEEF-- 194 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---SCCHHH--
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---ccchhH--
Confidence 5788899999999999999999997433 45677889999999999999877 78888876653 222222
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHHHHcCC
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD-TVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~-~~qA~~~~~~Al~LArk~gD 589 (705)
.+.+++++|.++..+|+|++|+.++.+|++++ ...++....+.++..+|.+|..+|+ .++|.++++.|+.+++..++
T Consensus 195 -~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 195 -DVKVRYNHAKALYLDSRYEESLYQVNKAIEIS-CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 37799999999999999999999999999999 5688888999999999999999995 59999999999999999999
Q ss_pred hhhHH
Q 005266 590 IPTQI 594 (705)
Q Consensus 590 ~~~q~ 594 (705)
.....
T Consensus 273 ~~~~~ 277 (293)
T 3u3w_A 273 HAYKE 277 (293)
T ss_dssp TGGGG
T ss_pred HHHHH
Confidence 76444
No 48
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.36 E-value=7.1e-11 Score=121.27 Aligned_cols=215 Identities=13% Similarity=0.049 Sum_probs=152.9
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhH
Q 005266 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (705)
Q Consensus 346 ~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~ 425 (705)
++...+.++...|++++|.++++++++. .|.. ...|. ... .. +
T Consensus 91 ~~~~la~~~~~~~~~~~A~~~~~~~~~~----------~~~~-------~~~~~--~~~--~~--------~-------- 133 (327)
T 3cv0_A 91 VHAALAVSHTNEHNANAALASLRAWLLS----------QPQY-------EQLGS--VNL--QA--------D-------- 133 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT----------STTT-------TTC----------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCcc-------HHHHH--HHh--HH--------H--------
Confidence 4455677788899999999999999874 1211 11110 000 00 0
Q ss_pred HhhhhhHHHHHHHH-HH-HHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccc
Q 005266 426 EAQEACESMIEMLR-GQ-YAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPV 499 (705)
Q Consensus 426 ~a~~~~~a~~~~ll-G~-~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~ 499 (705)
........+ |. ++...|++++|...|.++++..++. ..+..++|.++...|++++ +.++++.
T Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 201 (327)
T 3cv0_A 134 -----VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND---AQLHASLGVLYNLSNNYDSAAANLRRAVEL---- 201 (327)
T ss_dssp -----------------CCTTSHHHHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred -----HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence 000011133 44 5778899999999999999987763 3567888999999999877 4555542
Q ss_pred cccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005266 500 YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 579 (705)
Q Consensus 500 ~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~ 579 (705)
.|++ +.+++.+|.++...|++++|...++++++.. . .+ ..++..+|.++...|++++|.+.++.
T Consensus 202 --~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 202 --RPDD-------AQLWNKLGATLANGNRPQEALDAYNRALDIN-P--GY----VRVMYNMAVSYSNMSQYDLAAKQLVR 265 (327)
T ss_dssp --CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C--CC----HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 2332 5689999999999999999999999999884 2 22 34788999999999999999999999
Q ss_pred HHHHHHHcCChhh------HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 580 SLTLAKKLYDIPT------QIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 580 Al~LArk~gD~~~------q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
++.+.....+..+ ...+...++.++...|++++|.+.+....+...
T Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9998876544443 466778899999999999999998776555443
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=4.5e-11 Score=114.07 Aligned_cols=164 Identities=16% Similarity=0.136 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccch
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTING 508 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g 508 (705)
+.+++.+|.++..+|++++|+.+|++|+++.++.. .+..++|.++...|+++. +.+++. ..|+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~a~~~~~~~~~------~~~~---- 71 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV---ETLLKLGKTYMDIGLPNDAIESLKKFVV------LDTT---- 71 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCCC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCch----
Confidence 56788999999999999999999999999988743 468889999999999877 344443 2233
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcC
Q 005266 509 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 588 (705)
Q Consensus 509 ~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~g 588 (705)
.+.++...|..+...+++++|...+.+++++. ..+ ..++..+|.+|..+|++++|.+.+++++.+-
T Consensus 72 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~---~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~---- 137 (184)
T 3vtx_A 72 ---SAEAYYILGSANFMIDEKQAAIDALQRAIALN---TVY----ADAYYKLGLVYDSMGEHDKAIEAYEKTISIK---- 137 (184)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccc----hHHHHHHHHHHHHhCCchhHHHHHHHHHHhc----
Confidence 25688999999999999999999999998874 223 2478899999999999999999999999762
Q ss_pred ChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 589 DIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 589 D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
+....+...+|.+|...|++++|.+.++.+.+...
T Consensus 138 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 138 --PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred --chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 22366778899999999999999999998876543
No 50
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=1.6e-11 Score=144.85 Aligned_cols=169 Identities=18% Similarity=0.051 Sum_probs=145.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCC
Q 005266 429 EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKD 504 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~ 504 (705)
.|..+.+++.+|.++..+|++++|+.+|++|+++.++. +.+..|+|.++...|++++ +.+|+++ .|+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~---~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l------~P~ 75 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRI------SPT 75 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Confidence 34678899999999999999999999999999998874 3568999999999999877 7777773 344
Q ss_pred ccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 505 TINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 505 ~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
+ +.+|+++|.++..+|++++|...+++|+++. . .+ +.++..||.+|..+|++++|.+.|++|+++.
T Consensus 76 ~-------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P--~~----~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 76 F-------ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-P--AF----ADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 6799999999999999999999999999983 2 22 4589999999999999999999999999872
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 585 KKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 585 rk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
+ ....++..||.++...|+.++|.+.++...++..+
T Consensus 142 ---P---~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 142 ---P---DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp ---S---CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred ---C---CChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 2 23667889999999999999999998888776654
No 51
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=4.6e-10 Score=122.66 Aligned_cols=356 Identities=12% Similarity=0.061 Sum_probs=199.7
Q ss_pred HHHHHhHHHhhhcccHhHHhHHHHHHhccCCCCC---hHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHhhcCCch
Q 005266 6 EGLWGLADYHENKGEIGKAVKCLEAICQSHVSFL---PIIEVKTRLRISTLLLKH-THNVNHAKSHLERSQLLLKAIPSC 81 (705)
Q Consensus 6 ~~L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~---p~~EA~~rLrla~iL~e~-T~N~~~A~thLeka~~l~~~i~~~ 81 (705)
..+-.+|.-+...++...|+.+++-+++..+.++ ...-+.+....|..++.. .+|+++|+..|+||+.+.|..+
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~-- 172 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP-- 172 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH--
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH--
Confidence 3444577777778899999999999886332111 011133444556555544 4689999999999999988887
Q ss_pred hhhhhhHHHHHHHHHHHc---CCChhHHHHHHHHHhhccccccccccchhh-HhHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 005266 82 FELKCRTFSLLSQCYHLV---GAIPPQKLILYKALDLTSSASQDVAVKLWS-CNFNSQLANAFIIEGDYQSSISALQSGY 157 (705)
Q Consensus 82 ~dlK~~~~~lLA~~y~~~---~~~~~ak~~l~kai~~~~~~~~~~~~~~W~-~~f~~~lA~~~~~~~d~~~A~~~L~~~~ 157 (705)
.+++.++.++... +....+...+++++++.+. +.+. +.+-..++.++...+++..|.+.+++..
T Consensus 173 -----~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-------~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al 240 (472)
T 4g1t_A 173 -----EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-------NQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL 240 (472)
T ss_dssp -----HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-------CHHHHHHHHHHHHHCC------CHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-------chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6777777776554 5556777889999998873 3332 2222345566677789999999999977
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCcccccccccchhhhhHHHHHHHHhhhhhhhhh
Q 005266 158 VCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAA 237 (705)
Q Consensus 158 ~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G~~~~~E~l~v~~~L~vc~~~~~~ 237 (705)
.. ++....+++.++.++... .+++++...+.++...- |+ ...+++.|-.|.. ..+
T Consensus 241 ~~----~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~----p~-------------~~~~~~~lg~~y~-~~~ 295 (472)
T 4g1t_A 241 EK----APGVTDVLRSAAKFYRRK---DEPDKAIELLKKALEYI----PN-------------NAYLHCQIGCCYR-AKV 295 (472)
T ss_dssp HH----CSSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHS----TT-------------CHHHHHHHHHHHH-HHH
T ss_pred Hh----CccHHHHHHHHHHHHHHc---CchHHHHHHHHHHHHhC----CC-------------hHHHHHHHHHHHH-HHH
Confidence 76 788889999999998877 78888888877765442 21 1122222222211 110
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHHHHhccCCCCCccccccccccCCc
Q 005266 238 HHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNA 317 (705)
Q Consensus 238 ~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~i~~~~~~~~~~~~~l~~~~~~~~ 317 (705)
... ... ...............++++...++.+.. .|.
T Consensus 296 ~~~-----------------~~~---------~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~---------------- 332 (472)
T 4g1t_A 296 FQV-----------------MNL---------RENGMYGKRKLLELIGHAVAHLKKADEA-NDN---------------- 332 (472)
T ss_dssp HHH-----------------HHC---------------CHHHHHHHHHHHHHHHHHHHHH-CTT----------------
T ss_pred HHh-----------------hhH---------HHHHHHHHHHHHhhHHHHHHHHHHHhhc-CCc----------------
Confidence 000 000 0000000000001112222233333322 100
Q ss_pred ccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHH
Q 005266 318 RQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAI 397 (705)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~ 397 (705)
.+.++...+.++...|++++|.+++++++.. .+. ......
T Consensus 333 -------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~----------~~~-----~~~~~~ 372 (472)
T 4g1t_A 333 -------------------------LFRVCSILASLHALADQYEEAEYYFQKEFSK----------ELT-----PVAKQL 372 (472)
T ss_dssp -------------------------TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS----------CCC-----HHHHHH
T ss_pred -------------------------hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc----------CCC-----ChHHHH
Confidence 1112445678888999999999999999874 111 000100
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 005266 398 WMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQ-YAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 476 (705)
Q Consensus 398 w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~-~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nl 476 (705)
++..+|. .....|++++|+.+|.+|+++.++......+...+
T Consensus 373 -------------------------------------~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l 415 (472)
T 4g1t_A 373 -------------------------------------LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL 415 (472)
T ss_dssp -------------------------------------HHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 1112332 34568999999999999999988744222111111
Q ss_pred HHHHHhhCChhh-HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 477 AVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 477 alv~l~~gd~d~-~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
.. +.+++. ..|++ +.+|+.+|.++..+|++++|+.++++||++.
T Consensus 416 ----------~~~~~~~l~------~~p~~-------~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 416 ----------QKIAKMRLS------KNGAD-------SEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp ----------HHHHHHHHH------HCC-C-------TTHHHHHHHHHHHHHHCC-------------
T ss_pred ----------HHHHHHHHH------hCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11 344444 23442 5589999999999999999999999999986
No 52
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.35 E-value=1.4e-10 Score=122.51 Aligned_cols=235 Identities=12% Similarity=0.001 Sum_probs=160.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHH
Q 005266 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 426 (705)
Q Consensus 347 yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~ 426 (705)
++..+..+...|++++|.+++++++.. .|.. ...|.....++... .... -.+...+-..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~----------~p~~-------~~~~~~lg~~~~~~---g~~~-~A~~~~~~al 126 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQ----------DPGD-------AEAWQFLGITQAEN---ENEQ-AAIVALQRCL 126 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTC-------HHHHHHHHHHHHHT---TCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCC-------HHHHHHHHHHHHHC---CCHH-HHHHHHHHHH
Confidence 455677888899999999999999985 2221 12332111111111 0000 0011111112
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChh-------HHHHHHHHHHHHHHhhCChhh----HHHHHHh
Q 005266 427 AQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-------MQAMCHAYAAVSYFCIGDAES----SSQAIDL 495 (705)
Q Consensus 427 a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~-------g~a~a~~nlalv~l~~gd~d~----~~~ALel 495 (705)
...+..+.+++.+|.++...|++++|..+|.+++++.++.. +.+....+++.++...|++++ +.+++++
T Consensus 127 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 23345688899999999999999999999999999866521 234455667888888787766 5666552
Q ss_pred hccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHH
Q 005266 496 IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQARE 575 (705)
Q Consensus 496 i~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~ 575 (705)
.|+.. .+.+++.+|.++...|++++|...+++++++. . .+ +.++..+|.+|...|++++|.+
T Consensus 207 ------~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p--~~----~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 207 ------NGDMI-----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-P--ED----YSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp ------SCSSC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------CcCcc-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C--CC----HHHHHHHHHHHHHcCCHHHHHH
Confidence 23311 15689999999999999999999999999984 2 23 3588999999999999999999
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 576 ILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 576 ~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
.+++++.+. + ....++..||.+|...|++++|.+.++.+.+...+
T Consensus 269 ~~~~al~~~---p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 269 AYTRALEIQ---P---GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHHC---T---TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC---C---CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 999999872 2 23667788999999999999999999999887754
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.34 E-value=3.6e-11 Score=119.54 Aligned_cols=162 Identities=13% Similarity=0.076 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccc
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 507 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~ 507 (705)
.+.+++.+|..+...|++++|...|++|+++.++.. .+..++|.++...|++++ +.++++ ..|++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~------~~P~~-- 72 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP---EALYWLARTQLKLGLVNPALENGKTLVA------RTPRY-- 72 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTC--
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCc--
Confidence 356778999999999999999999999999987643 468899999999999877 666666 23442
Q ss_pred hhhhHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHH
Q 005266 508 GVREEASLHFAYGLLLMRQ-----------QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREI 576 (705)
Q Consensus 508 g~~~qA~al~~lG~~~~~~-----------g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~ 576 (705)
+.+++.+|.++... |++++|...+++++++. -.+ ..++..+|.++...|++++|.+.
T Consensus 73 -----~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~----~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 73 -----LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRY----APLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp -----HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---ccc----HHHHHHHHHHHHHcCChHHHHHH
Confidence 56899999999999 99999999999999883 223 25788999999999999999999
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 577 LRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 577 ~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
+++|+.+. .+ ..+...||.+|...|++++|.+.++...+.
T Consensus 141 ~~~al~~~---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 141 LKQALALE---DT----PEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHC---CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcc---cc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999986 33 455678999999999999999999888765
No 54
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=4.2e-11 Score=119.84 Aligned_cols=179 Identities=15% Similarity=0.057 Sum_probs=146.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHH
Q 005266 443 AHSVGCYSEAAFHYVEAAKITE-----SKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEA 513 (705)
Q Consensus 443 ~~~~g~~~eA~~~f~~Al~l~~-----~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA 513 (705)
....|++++|+.+|++|+++.. +....+.+..++|.++...|+++. +.+++++...... ++... .+
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~---~~ 85 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG--KDHPA---VA 85 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--TTCHH---HH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC--CcchH---HH
Confidence 4568999999999999998753 345678889999999999999877 6777776544311 11111 36
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc--CCh
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG-NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL--YDI 590 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g-n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~--gD~ 590 (705)
.+++.+|.++...|++++|..++++++++..+..+ +....+.++..+|.+|...|++++|.+++++++.+.++. ++.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 79999999999999999999999999999843222 235678899999999999999999999999999998887 456
Q ss_pred hhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 591 PTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 591 ~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
+....++..||.+|...|++++|.+.++...+....
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999888876553
No 55
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.33 E-value=3.9e-10 Score=111.57 Aligned_cols=219 Identities=11% Similarity=-0.031 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 005266 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (705)
Q Consensus 343 ~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~ 422 (705)
.+-++...+.++...|++++|.+++++++.. . +. ...|.....++.. ..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----~-----~~--------~~~~~~~~~~~~~-------------~~ 52 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWEL-----H-----KD--------ITYLNNRAAAEYE-------------KG 52 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----S-----CC--------THHHHHHHHHHHH-------------TT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----h-----cc--------HHHHHHHHHHHHH-------------cc
Confidence 3567788899999999999999999999985 1 11 1222111111111 11
Q ss_pred hhHHhh---------hhh-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCCh
Q 005266 423 GFVEAQ---------EAC-------ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 486 (705)
Q Consensus 423 ~~~~a~---------~~~-------~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~ 486 (705)
++..|. .+. .+.++..+|.++...|++++|..+|.+++++.++. .++...|++
T Consensus 53 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------~~~~~~~~~ 121 (258)
T 3uq3_A 53 EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-----------DILTKLRNA 121 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-----------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-----------HHHHHHhHH
Confidence 222221 111 27888999999999999999999999999987662 233334444
Q ss_pred hhHHHHHHhhcccc-ccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Q 005266 487 ESSSQAIDLIGPVY-QMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 565 (705)
Q Consensus 487 d~~~~ALeli~~~~-~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~ 565 (705)
++ |++.+.... ..|. .+.+++.+|.++...|++++|..++++++++. . .+ ..++..+|.++.
T Consensus 122 ~~---a~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~--~~----~~~~~~l~~~~~ 184 (258)
T 3uq3_A 122 EK---ELKKAEAEAYVNPE-------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-P--ED----ARGYSNRAAALA 184 (258)
T ss_dssp HH---HHHHHHHHHHCCHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHcCcc-------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-c--cc----HHHHHHHHHHHH
Confidence 43 222222211 1222 36689999999999999999999999999884 2 23 368889999999
Q ss_pred HCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 566 ALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 566 ~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
..|++++|.+.++.++.+. ++ ...++..+|.+|...|++++|.+.++...+...+
T Consensus 185 ~~~~~~~A~~~~~~al~~~---~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 239 (258)
T 3uq3_A 185 KLMSFPEAIADCNKAIEKD---PN---FVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC---TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC---HH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChh
Confidence 9999999999999998763 22 2566778999999999999999999988887754
No 56
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.32 E-value=2.9e-10 Score=117.87 Aligned_cols=149 Identities=11% Similarity=0.090 Sum_probs=127.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchh
Q 005266 437 MLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 437 ~llG~~~~~~g~~~eA~~~f~~Al~l~~~---~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~ 509 (705)
+.+|.++...|++++|..+|.+|+.+... ..+.+.+..++|.+|...|+++. +.+|+++.... +++ ...
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~---~~~-~~~ 194 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL---HDN-EEF 194 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CCC-HHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---Ccc-ccc
Confidence 36789999999999999999999987543 45667899999999999999877 78888765543 222 111
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHH-HHHHHHHHHHHHHcC
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA-REILRSSLTLAKKLY 588 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA-~~~~~~Al~LArk~g 588 (705)
.+.+++++|.++..+|+|++|..++.+|++++ ...++....+.++..+|.+|..+|++++| ..+++.|+.+++..+
T Consensus 195 --~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~-~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 195 --DVKVRYNHAKALYLDSRYEESLYQVNKAIEIS-CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred --hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 23689999999999999999999999999998 46778888899999999999999999999 899999999999999
Q ss_pred Chhh
Q 005266 589 DIPT 592 (705)
Q Consensus 589 D~~~ 592 (705)
+...
T Consensus 272 ~~~~ 275 (293)
T 2qfc_A 272 MHAY 275 (293)
T ss_dssp CHHH
T ss_pred cHhh
Confidence 9754
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.29 E-value=2.1e-10 Score=115.39 Aligned_cols=235 Identities=10% Similarity=-0.007 Sum_probs=167.3
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhH
Q 005266 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (705)
Q Consensus 346 ~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~ 425 (705)
+.+..+.++...|++++|.++++++++. .|..+ ..|.....++... .+...+ ...+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~----------~p~~~-------~~~~~l~~~~~~~---~~~~~A---~~~~~ 61 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAK----------KYNSP-------YIYNRRAVCYYEL---AKYDLA---QKDIE 61 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHT----------TCCCS-------TTHHHHHHHHHHT---TCHHHH---HHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh----------CCCcH-------HHHHHHHHHHHHH---hhHHHH---HHHHH
Confidence 3456688889999999999999999874 22211 1221111111111 111100 00111
Q ss_pred Hhhh----h-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhcccc
Q 005266 426 EAQE----A-CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVY 500 (705)
Q Consensus 426 ~a~~----~-~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~ 500 (705)
.+.+ + ..+.++..+|.++...|++++|..+|.+++++.++.. .+..++|.++...|++++ |++.+....
T Consensus 62 ~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~---A~~~~~~al 135 (272)
T 3u4t_A 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL---DMYGQIGSYFYNKGNFPL---AIQYMEKQI 135 (272)
T ss_dssp HHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHHHHHHHHTTCHHH---HHHHHGGGC
T ss_pred HHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHccCHHH---HHHHHHHHh
Confidence 1111 1 2355688999999999999999999999999977643 468889999999998665 333333332
Q ss_pred c-cCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCC---hHHHHHH
Q 005266 501 Q-MKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD---TVQAREI 576 (705)
Q Consensus 501 ~-~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~---~~qA~~~ 576 (705)
. .|+ .+.+++.+|...+..+++++|...+++++++. . .+ ..++..+|.++..+|+ .++|...
T Consensus 136 ~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p--~~----~~~~~~~~~~~~~~~~~~~~~~A~~~ 201 (272)
T 3u4t_A 136 RPTTT-------DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-P--NI----YIGYLWRARANAAQDPDTKQGLAKPY 201 (272)
T ss_dssp CSSCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T--TC----HHHHHHHHHHHHHHSTTCSSCTTHHH
T ss_pred hcCCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-c--cc----hHHHHHHHHHHHHcCcchhhHHHHHH
Confidence 2 233 25689999955556679999999999999985 2 22 3578889999999999 8889999
Q ss_pred HHHHHHHHHHcCCh--hhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 577 LRSSLTLAKKLYDI--PTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 577 ~~~Al~LArk~gD~--~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
++.++.+..+.++. .....++..||.+|...|++++|.++++...+.
T Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 202 YEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999888873 445567888999999999999999988877654
No 58
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.29 E-value=1.2e-10 Score=121.02 Aligned_cols=152 Identities=15% Similarity=0.023 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHH
Q 005266 448 CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLL 523 (705)
Q Consensus 448 ~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~ 523 (705)
++++|..+|.+|. .+|...|++++ +.+|+++.... ++..+ .+.+|..+|.++
T Consensus 32 ~~~~A~~~~~~a~-----------------~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~---~a~~~~~lg~~~ 87 (292)
T 1qqe_A 32 KFEEAADLCVQAA-----------------TIYRLRKELNLAGDSFLKAADYQKKA----GNEDE---AGNTYVEAYKCF 87 (292)
T ss_dssp HHHHHHHHHHHHH-----------------HHHHHTTCTHHHHHHHHHHHHHHHHT----TCHHH---HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-----------------HHHHHcCCHHHHHHHHHHHHHHHHHh----CCHHH---HHHHHHHHHHHH
Confidence 4888999998873 35666788877 78888876554 22222 377999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 005266 524 MRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL-HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 602 (705)
Q Consensus 524 ~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l-g~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~ 602 (705)
...|++++|+.++++|+++. ...|++...+.++..||.+|... |++++|.++|++|+.+....++......++..+|.
T Consensus 88 ~~~g~~~~A~~~~~~Al~l~-~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 166 (292)
T 1qqe_A 88 KSGGNSVNAVDSLENAIQIF-THRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD 166 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 99999999999999999998 57899999999999999999996 99999999999999999999998888888999999
Q ss_pred HHHHcCCchHHHHHHHHHHHHH
Q 005266 603 LYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 603 l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
+|...|++++|.+.++...+..
T Consensus 167 ~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 167 LKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999999998877654
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.26 E-value=1.2e-09 Score=109.89 Aligned_cols=185 Identities=11% Similarity=-0.008 Sum_probs=135.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 005266 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (705)
Q Consensus 344 aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~ 423 (705)
+.+|+..+.++...|++++|.++++++++. .|.. ...|
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~-------~~~~------------------------- 111 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDR----------DTTR-------LDMY------------------------- 111 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTC-------THHH-------------------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc----------Cccc-------HHHH-------------------------
Confidence 456778888999999999999999999885 1211 1122
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHhhCChhh----HHHHHHhhcc
Q 005266 424 FVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA-VSYFCIGDAES----SSQAIDLIGP 498 (705)
Q Consensus 424 ~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nla-lv~l~~gd~d~----~~~ALeli~~ 498 (705)
..+|.++...|++++|..+|.+++++.++. ..+..++| .+|.. +++++ +.++++
T Consensus 112 -------------~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~---- 170 (272)
T 3u4t_A 112 -------------GQIGSYFYNKGNFPLAIQYMEKQIRPTTTD---PKVFYELGQAYYYN-KEYVKADSSFVKVLE---- 170 (272)
T ss_dssp -------------HHHHHHHHHTTCHHHHHHHHGGGCCSSCCC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHH----
T ss_pred -------------HHHHHHHHHccCHHHHHHHHHHHhhcCCCc---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----
Confidence 267889999999999999999999886553 34577888 55554 57655 455555
Q ss_pred ccccCCccchhhhHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhcccC--HHHHHHHHHHHHHHHHHCCChHHH
Q 005266 499 VYQMKDTINGVREEASLHFAYGLLLMRQQD---FQEARNRLAKGLQIAHNHMGN--LQLVSQYLTILGNLALALHDTVQA 573 (705)
Q Consensus 499 ~~~~~~~~~g~~~qA~al~~lG~~~~~~g~---~~eA~~~L~eAL~la~~e~gn--~~l~a~aL~~LG~i~~~lg~~~qA 573 (705)
..|++ ..+++.+|.++...|+ +++|...+++++++.. ...+ ......++..||.+|...|++++|
T Consensus 171 --~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 171 --LKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA-PGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp --HSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG-GGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --hCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 23432 4588899999999999 9999999999999983 4454 355667999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q 005266 574 REILRSSLTLAKKLYDIPTQIWALSVLTALYQQL 607 (705)
Q Consensus 574 ~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~ 607 (705)
.+++++++.+. ++ -..+...++.+....
T Consensus 241 ~~~~~~al~~~---p~---~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALD---PT---NKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHC---TT---CHHHHHHHC------
T ss_pred HHHHHHHHhcC---cc---HHHHHHHhhhhhccc
Confidence 99999999873 22 244455555554443
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=2.5e-10 Score=112.88 Aligned_cols=154 Identities=19% Similarity=0.127 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE-SKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~-~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
++..++.+|..+...|++++|...|.+++++.+ ... .+..++|.++...|++++ +.++++ ..|+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~p~-- 74 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---VTAYNCGVCADNIKKYKEAADYFDIAIK------KNYN-- 74 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHH------TTCS--
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHH------hCcc--
Confidence 457788999999999999999999999999986 322 457779999999999877 566665 3344
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCH---HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL---QLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~---~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
.+.+++.+|.++...|++++|...+++++++. -.|+ ...+.++..+|.++...|++++|.+.+++++.+
T Consensus 75 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 75 -----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV---PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred -----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 26689999999999999999999999999985 2333 335578999999999999999999999999876
Q ss_pred HHHcCChhh--HHHHHHHHHHHHHHcCCc
Q 005266 584 AKKLYDIPT--QIWALSVLTALYQQLGDR 610 (705)
Q Consensus 584 Ark~gD~~~--q~~al~~L~~l~~~~Gd~ 610 (705)
.+. ...++..||.+|...|+.
T Consensus 147 ------~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 147 ------TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp ------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCcccHHHHHHHHHHHHHHHHH
Confidence 223 356778889999888877
No 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.24 E-value=2.7e-10 Score=112.19 Aligned_cols=198 Identities=12% Similarity=0.053 Sum_probs=135.9
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 005266 342 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 421 (705)
Q Consensus 342 ~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~ 421 (705)
+.+..++..+..+...|++++|.++++++++. .|..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----------~~~~---------------------------------- 56 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE----------NKED---------------------------------- 56 (243)
T ss_dssp ---------------------CCTTHHHHHTT----------CTTC----------------------------------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----------Cccc----------------------------------
Confidence 45667777788889999999999988888763 1110
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhc
Q 005266 422 SGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIG 497 (705)
Q Consensus 422 ~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~ 497 (705)
+.++..+|.++...|++++|...|.+++++.++. ..+..++|.++...|++++ +.++++.
T Consensus 57 -----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-- 120 (243)
T 2q7f_A 57 -----------AIPYINFANLLSSVNELERALAFYDKALELDSSA---ATAYYGAGNVYVVKEMYKEAKDMFEKALRA-- 120 (243)
T ss_dssp -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 1112366888889999999999999999887653 3557788999999899876 4555552
Q ss_pred cccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHH
Q 005266 498 PVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREIL 577 (705)
Q Consensus 498 ~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~ 577 (705)
.|.+ ..+++.+|.++...|++++|..++.++++.. . .+ ..++..+|.++...|++++|.+.+
T Consensus 121 ----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~--~~----~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 121 ----GMEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAVELN-E--ND----TEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp ----TCCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ----CCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C--cc----HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2321 4578899999999999999999999998884 2 23 247889999999999999999999
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 578 RSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 578 ~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
+.++.+.. + ...++..++.+|...|++++|.+.++...+.
T Consensus 183 ~~~~~~~~---~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 183 AAVTEQDP---G---HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHCT---T---CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhCc---c---cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99987632 2 2456778999999999999999988877654
No 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.23 E-value=1.9e-09 Score=107.18 Aligned_cols=204 Identities=10% Similarity=-0.010 Sum_probs=155.0
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 005266 342 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 421 (705)
Q Consensus 342 ~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~ 421 (705)
..+.+++..+.++...|++++|.+++++++.. .|..
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------~~~~---------------------------------- 70 (252)
T 2ho1_A 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----------DPSS---------------------------------- 70 (252)
T ss_dssp HHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----------CTTC----------------------------------
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCCh----------------------------------
Confidence 34788888999999999999999999999875 1110
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccc
Q 005266 422 SGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQ 501 (705)
Q Consensus 422 ~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~ 501 (705)
+.+++.+|.++...|++++|...|.+++++.++. ..+..+++.++...|++++....++..-....
T Consensus 71 -----------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 136 (252)
T 2ho1_A 71 -----------ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN---ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL 136 (252)
T ss_dssp -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTT
T ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCcc
Confidence 0112367888899999999999999999987653 34678889999999997763332221111101
Q ss_pred cCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005266 502 MKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSL 581 (705)
Q Consensus 502 ~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al 581 (705)
.|+ .+.+++.+|.++...|++++|..++.++++.. . .+ ..++..+|.++...|++++|.+.++.++
T Consensus 137 ~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~--~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 137 YPE-------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-R--NQ----PSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp CTT-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-S--CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Ccc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-c--cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 232 36689999999999999999999999999884 2 23 3578899999999999999999999987
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 582 TLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 582 ~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
... ++ ...++..++.++...|++++|.+.++...+.
T Consensus 203 ~~~---~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 203 QGG---GQ---NARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TTS---CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhC---cC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 642 22 2445677899999999999999877766543
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.23 E-value=5.8e-10 Score=106.23 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 005266 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (705)
Q Consensus 343 ~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~ 422 (705)
.+-+|+-.+.+++.+|++++|.++++++++. .|.- ..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~----------~p~~-------~~-------------------------- 40 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA----------DPNN-------VE-------------------------- 40 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTC-------HH--------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCC-------HH--------------------------
Confidence 3568889999999999999999999999985 2221 11
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhcc
Q 005266 423 GFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGP 498 (705)
Q Consensus 423 ~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~ 498 (705)
++..+|.++...|++++|...|..++...++.. .+..+.+.++...++++. +.+++.
T Consensus 41 ------------~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~a~~---- 101 (184)
T 3vtx_A 41 ------------TLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA---EAYYILGSANFMIDEKQAAIDALQRAIA---- 101 (184)
T ss_dssp ------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred ------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Confidence 123678899999999999999999999877643 446777888888888766 455554
Q ss_pred ccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Q 005266 499 VYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILR 578 (705)
Q Consensus 499 ~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~ 578 (705)
..|++ ..+++.+|.++...|++++|...+++++++. -.+ +.++..+|.+|..+|++++|.++++
T Consensus 102 --~~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~---p~~----~~~~~~lg~~~~~~g~~~~A~~~~~ 165 (184)
T 3vtx_A 102 --LNTVY-------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIK---PGF----IRAYQSIGLAYEGKGLRDEAVKYFK 165 (184)
T ss_dssp --HCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --hCccc-------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhc---chh----hhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22332 5689999999999999999999999999883 223 3588999999999999999999999
Q ss_pred HHHHHH
Q 005266 579 SSLTLA 584 (705)
Q Consensus 579 ~Al~LA 584 (705)
+|+.+-
T Consensus 166 ~al~~~ 171 (184)
T 3vtx_A 166 KALEKE 171 (184)
T ss_dssp HHHHTT
T ss_pred HHHhCC
Confidence 999763
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.22 E-value=2.6e-10 Score=127.50 Aligned_cols=196 Identities=9% Similarity=-0.059 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 005266 343 YALVDLMVVILGRPKGLF-KECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 421 (705)
Q Consensus 343 ~aL~yll~~~~~~~~g~~-~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~ 421 (705)
.+.+++..+.++...|++ ++|.++++++++. .|.. ..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~----------~p~~-------~~------------------------- 138 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL----------EPEL-------VE------------------------- 138 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH----------CTTC-------HH-------------------------
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh----------CCCC-------HH-------------------------
Confidence 356778889999999999 9999999999885 1210 11
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhh---------CChhh----
Q 005266 422 SGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI---------GDAES---- 488 (705)
Q Consensus 422 ~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~---------gd~d~---- 488 (705)
+++.+|.++...|++++|..+|++|+++.++ ..+..++|.++... |++++
T Consensus 139 -------------a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~ 201 (474)
T 4abn_A 139 -------------AWNQLGEVYWKKGDVTSAHTCFSGALTHCKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201 (474)
T ss_dssp -------------HHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHH
Confidence 2236799999999999999999999999876 37789999999987 66655
Q ss_pred HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 005266 489 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ--------QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 560 (705)
Q Consensus 489 ~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~--------g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~L 560 (705)
+.+|+++ .|++ +.+|+.+|.++... |++++|...+++|+++. . . ....+.++..+
T Consensus 202 ~~~al~~------~p~~-------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p-~--~~~~~~~~~~l 264 (474)
T 4abn_A 202 AKLAVQM------DVLD-------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-R-K--ASSNPDLHLNR 264 (474)
T ss_dssp HHHHHHH------CTTC-------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-G-G--GGGCHHHHHHH
T ss_pred HHHHHHh------CCCC-------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-C-C--cccCHHHHHHH
Confidence 5555552 3442 56899999999999 99999999999999983 1 1 11335689999
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 005266 561 GNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 620 (705)
Q Consensus 561 G~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 620 (705)
|.+|...|++++|.+.+++|+.+. ++ -..+...++.++...|+.++|.+.++..
T Consensus 265 g~~~~~~g~~~~A~~~~~~al~l~---p~---~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 265 ATLHKYEESYGEALEGFSQAAALD---PA---WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---TT---CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CC---CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999873 22 2566788999999999998888866543
No 65
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.19 E-value=2.3e-09 Score=115.80 Aligned_cols=183 Identities=9% Similarity=0.006 Sum_probs=154.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccch
Q 005266 436 EMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTING 508 (705)
Q Consensus 436 ~~llG~~~~~~g~~~eA~~~f~~Al~l~~~---~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g 508 (705)
..-+|.++..+|++++|..+|.++++..+. ......+..+++.++...|+++. +..+++.....+..+.
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---- 133 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL---- 133 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH----
Confidence 457899999999999999999999988654 34556677788888887888766 6777776555422222
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcC
Q 005266 509 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 588 (705)
Q Consensus 509 ~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~g 588 (705)
++..+..+|.++...|+|++|...+.+++.... ...+....+.++..+|.+|+..|++.+|...+++++.++...+
T Consensus 134 ---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 209 (434)
T 4b4t_Q 134 ---KHSLSIKLATLHYQKKQYKDSLALINDLLREFK-KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY 209 (434)
T ss_dssp ---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred ---HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence 578999999999999999999999999999984 5777788899999999999999999999999999999999998
Q ss_pred Ch-hhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 589 DI-PTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 589 D~-~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
+. ..++.....+|.+|...|++.+|..++..+.+..+.
T Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~ 248 (434)
T 4b4t_Q 210 CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHN 248 (434)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 86 456778888999999999999999988877766554
No 66
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.17 E-value=6.7e-09 Score=100.38 Aligned_cols=199 Identities=10% Similarity=0.044 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 005266 342 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 421 (705)
Q Consensus 342 ~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~ 421 (705)
..+.+++..+.++...|++++|.++++++++. .|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------~~~~---------------------------------- 41 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKS----------DPKN---------------------------------- 41 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTC----------------------------------
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----------Cccc----------------------------------
Confidence 34667788888999999999999999998875 1110
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhh-CChhh----HHHHHHhh
Q 005266 422 SGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI-GDAES----SSQAIDLI 496 (705)
Q Consensus 422 ~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~-gd~d~----~~~ALeli 496 (705)
+.++..+|.++...|++++|..+|.+++.+.++. ..+..++|.++... |++++ +.++++
T Consensus 42 -----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-- 105 (225)
T 2vq2_A 42 -----------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA-- 105 (225)
T ss_dssp -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT--
T ss_pred -----------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc--
Confidence 0122367888899999999999999999987653 24578889999999 99777 344433
Q ss_pred ccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHH
Q 005266 497 GPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREI 576 (705)
Q Consensus 497 ~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~ 576 (705)
.+ ..|+ ...+++.+|.++...|++++|..++.++++.. . .+ ..++..+|.++...|++++|.+.
T Consensus 106 ~~--~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~--~~----~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 106 DP--TYPT-------PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-P--QF----PPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp ST--TCSC-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T--TC----HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred Cc--CCcc-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--CC----chHHHHHHHHHHHcCCHHHHHHH
Confidence 11 1222 25689999999999999999999999998874 2 22 35788999999999999999999
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005266 577 LRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 577 ~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
++.++.+.. .+. ..++..++.++...|+.++|...++...
T Consensus 170 ~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 170 FKKYQSRVE--VLQ---ADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHC--SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCC--CCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999987642 022 2234567889999999998887665544
No 67
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=1.3e-09 Score=110.30 Aligned_cols=175 Identities=13% Similarity=-0.006 Sum_probs=137.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCc
Q 005266 430 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 430 ~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~ 505 (705)
+..+..++.+|..+...|++++|...|.++++..++......+..++|.++...|+++. +.++++ .+|++
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~------~~p~~ 85 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ------IYQID 85 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTC
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH------HCCCC
Confidence 35677889999999999999999999999999988876667889999999999999877 566655 23433
Q ss_pred cchhhhHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHHHHhcccCHHHHHHHH--------------HHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMR--------QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL--------------TILGNL 563 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~--------~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL--------------~~LG~i 563 (705)
.. ...+++.+|.+++. .|++++|+..++++++.. . .+ .....++ ..+|.+
T Consensus 86 ~~----~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p--~~-~~~~~a~~~~~~~~~~~~~~~~~la~~ 157 (261)
T 3qky_A 86 PR----VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-P--NH-ELVDDATQKIRELRAKLARKQYEAARL 157 (261)
T ss_dssp TT----HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-T--TC-TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch----hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-c--Cc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 25689999999999 999999999999999885 2 22 1222333 889999
Q ss_pred HHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc----------CCchHHHHHHHHHH
Q 005266 564 ALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL----------GDRGNEMENDEYRR 621 (705)
Q Consensus 564 ~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~----------Gd~~~A~e~~~~~~ 621 (705)
|...|++++|.+.++.++... ++......++..+|.+|... |++++|.+.+....
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAY---PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 999999999999999998654 34333466778899999988 55566666555443
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=8.3e-10 Score=130.14 Aligned_cols=168 Identities=14% Similarity=0.096 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 005266 342 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 421 (705)
Q Consensus 342 ~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~ 421 (705)
..+-+|...+.++...|++++|.++++++++. .|.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----------~P~----------------------------------- 41 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEV----------FPE----------------------------------- 41 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CSC-----------------------------------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCC-----------------------------------
Confidence 35677888899999999999999999999985 222
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhc
Q 005266 422 SGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIG 497 (705)
Q Consensus 422 ~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~ 497 (705)
.+.+++.+|.++..+|++++|+.+|++|+++.++. +.+..|+|.++...|++++ +.+|+++
T Consensus 42 ----------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-- 106 (723)
T 4gyw_A 42 ----------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQI-- 106 (723)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 11223478999999999999999999999998764 3568999999999999877 6777773
Q ss_pred cccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHH
Q 005266 498 PVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREIL 577 (705)
Q Consensus 498 ~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~ 577 (705)
.|++ +.+|+++|.++..+|++++|+..+++|+++. -.+ ..++..||.++..+|+.++|.+.+
T Consensus 107 ----~P~~-------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~----~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 107 ----NPAF-------ADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDF----PDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp ----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCC----HHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred ----CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----hHHHhhhhhHHHhcccHHHHHHHH
Confidence 3442 6799999999999999999999999999983 223 358899999999999999999999
Q ss_pred HHHHHHHHHc
Q 005266 578 RSSLTLAKKL 587 (705)
Q Consensus 578 ~~Al~LArk~ 587 (705)
++++++..+.
T Consensus 169 ~kal~l~~~~ 178 (723)
T 4gyw_A 169 KKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhChhH
Confidence 9999998763
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.14 E-value=4.6e-09 Score=101.56 Aligned_cols=168 Identities=16% Similarity=0.042 Sum_probs=135.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCc
Q 005266 430 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 430 ~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~ 505 (705)
+..+.+++.+|..+...|++++|...|.+++++.++. ..+..++|.++...|++++ +.+++++ .|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~ 75 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN---ELAWLVRAEIYQYLKVNDKAQESFRQALSI------KPDS 75 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCC
Confidence 3567788899999999999999999999999987764 3467788999999999877 5555552 2331
Q ss_pred cchhhhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQ-QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~-g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
+.+++.+|.++... |++++|...++++++ . . .+ .....++..+|.++...|++++|.+.++.++...
T Consensus 76 -------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~-~--~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 143 (225)
T 2vq2_A 76 -------AEINNNYGWFLCGRLNRPAESMAYFDKALA-D-P--TY-PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143 (225)
T ss_dssp -------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S-T--TC-SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C-c--CC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 56889999999999 999999999999987 1 1 12 2335688999999999999999999999998763
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 585 KKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 585 rk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
. + ...+...++.++...|++++|.+.++...+..
T Consensus 144 ~---~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 144 P---Q---FPPAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp T---T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred C---C---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 2 25567789999999999999999888876643
No 70
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.13 E-value=1.3e-08 Score=103.36 Aligned_cols=221 Identities=16% Similarity=0.011 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHH--HHHHHHHHHHH-HHhHHHHHhh
Q 005266 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIW--MAGVYLMLLMQ-FLENKVAVEL 419 (705)
Q Consensus 343 ~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w--~~~~~~~l~~~-~Le~~~~~~L 419 (705)
.+-+++..+..+...|++++|.++++++++. + . ...| .+.+|. .-. ...+....
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~---~--------~~a~~~lg~~~~--~g~~~~~~~~~A-- 61 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--------K---E--------NSGCFNLGVLYY--QGQGVEKNLKKA-- 61 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------T---C--------HHHHHHHHHHHH--HTSSSCCCHHHH--
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------C---C--------HHHHHHHHHHHH--cCCCcCCCHHHH--
Confidence 3556778889999999999999999999872 1 0 0111 111111 100 00000000
Q ss_pred hhhhhHHhhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh----hCChhh---
Q 005266 420 TRSGFVEAQEACESMIEMLRGQYAHS----VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC----IGDAES--- 488 (705)
Q Consensus 420 ~~~~~~~a~~~~~a~~~~llG~~~~~----~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~----~gd~d~--- 488 (705)
..-+..+.+...+.+++.+|.++.. .|++++|...|++|++.. ...+..++|.+|.. .++++.
T Consensus 62 -~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~A~~ 135 (273)
T 1ouv_A 62 -ASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKVVTRDFKKAVE 135 (273)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred -HHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----CccHHHHHHHHHHcCCCcccCHHHHHH
Confidence 1122233344578889999999999 999999999999999873 34568999999998 778666
Q ss_pred -HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Q 005266 489 -SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 563 (705)
Q Consensus 489 -~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~----~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i 563 (705)
+.+|++. + -+.+++.+|.++.. .+++++|..+++++++. ++ ..++..||.+
T Consensus 136 ~~~~a~~~--------~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~----~~a~~~lg~~ 191 (273)
T 1ouv_A 136 YFTKACDL--------N-------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----KD----SPGCFNAGNM 191 (273)
T ss_dssp HHHHHHHT--------T-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHH
T ss_pred HHHHHHhc--------C-------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CC----HHHHHHHHHH
Confidence 4555551 1 14578999999998 99999999999999755 33 3578899999
Q ss_pred HHH----CCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHH
Q 005266 564 ALA----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ----LGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 564 ~~~----lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~----~Gd~~~A~e~~~~~~~~~ 624 (705)
|.. .+++++|.+.+++++.. ++ ..+...||.+|.. .|++++|.++++.+.+.-
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACEL----EN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999 99999999999999865 44 5677889999999 999999999888776553
No 71
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.12 E-value=3.5e-09 Score=104.65 Aligned_cols=175 Identities=14% Similarity=0.055 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccc
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 507 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~ 507 (705)
.+..+..+|..+...|++++|...|.++++.. +. ..+..++|.++...|++++ +.+++++.... +.+..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~ 76 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM---RADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCCHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---ccchH
Confidence 46778899999999999999999999999987 32 3568888999999999877 56666633221 11111
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-------------------hcc-cCHHHHHHHHHHHHHHHHHC
Q 005266 508 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH-------------------NHM-GNLQLVSQYLTILGNLALAL 567 (705)
Q Consensus 508 g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~-------------------~e~-gn~~l~a~aL~~LG~i~~~l 567 (705)
. .+.+++.+|.++...|++++|..++.+++++.. +.. .+ ...+.++..+|.++...
T Consensus 77 ~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 77 V---ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp H---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred H---HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 1 267999999999999999999999999998521 000 23 34567899999999999
Q ss_pred CChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 568 HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 568 g~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
|++++|.+.++.++.+... ...++..+|.++...|++++|.+.++...+.
T Consensus 153 ~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999876322 2466778999999999999999999888765
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=1.9e-09 Score=109.08 Aligned_cols=206 Identities=13% Similarity=0.036 Sum_probs=151.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 005266 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (705)
Q Consensus 344 aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~ 423 (705)
+-.++-.+..+...|++++|.+.++++++. .|..+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----------~p~~~----------------------------------- 49 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTY----------GRTHE----------------------------------- 49 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGG----------CSCST-----------------------------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------CCCCc-----------------------------------
Confidence 456677788888899999999988888774 12210
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh--------hCChhh----HHH
Q 005266 424 FVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC--------IGDAES----SSQ 491 (705)
Q Consensus 424 ~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~--------~gd~d~----~~~ 491 (705)
..+.+++.+|.++...|++++|...|.+++++.++......+..++|.++.. .|+++. +.+
T Consensus 50 -------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~ 122 (261)
T 3qky_A 50 -------WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQL 122 (261)
T ss_dssp -------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 0122344789999999999999999999999988766666788999999988 666655 444
Q ss_pred HHHhhccccccCCccchhhh----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 005266 492 AIDLIGPVYQMKDTINGVRE----------EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILG 561 (705)
Q Consensus 492 ALeli~~~~~~~~~~~g~~~----------qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG 561 (705)
+++ .+|++...... .+..++.+|.+++..|++++|...++++++.. . +......++..+|
T Consensus 123 ~l~------~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p---~~~~~~~a~~~l~ 192 (261)
T 3qky_A 123 FID------RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-P---DTPWADDALVGAM 192 (261)
T ss_dssp HHH------HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T---TSTTHHHHHHHHH
T ss_pred HHH------HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-C---CCchHHHHHHHHH
Confidence 444 34544221100 01223889999999999999999999999874 2 2234567899999
Q ss_pred HHHHHC----------CChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHH
Q 005266 562 NLALAL----------HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEM 614 (705)
Q Consensus 562 ~i~~~l----------g~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~ 614 (705)
.+|..+ |++++|.+.++.++.. -++.+....+...|++++...|+.+.+.
T Consensus 193 ~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 193 RAYIAYAEQSVRARQPERYRRAVELYERLLQI---FPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHhcccchhhcccchHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999988 8889999999998765 4555556677788888888887765443
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.11 E-value=3.3e-09 Score=98.98 Aligned_cols=164 Identities=15% Similarity=0.094 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccc
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 507 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~ 507 (705)
.+..+..+|..+...|++++|...|.++++..++. ..+..++|.++...|+++. +.++++. .|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~--- 74 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---VDVALHLGIAYVKTGAVDRGTELLERSLAD------APD--- 74 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT---
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCC---
Confidence 34567789999999999999999999998876653 3567888999999999876 4555542 233
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc
Q 005266 508 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 587 (705)
Q Consensus 508 g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~ 587 (705)
...+++.+|.++...|++++|..++.++++.. . .+ ..++..+|.++...|++++|.+.++.++...
T Consensus 75 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~--~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 140 (186)
T 3as5_A 75 ----NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-P--IN----FNVRFRLGVALDNLGRFDEAIDSFKIALGLR--- 140 (186)
T ss_dssp ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred ----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-c--Hh----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---
Confidence 15688999999999999999999999999884 2 23 3578899999999999999999999998763
Q ss_pred CChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 588 YDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 588 gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
++ ...+...++.++...|++++|.+.++...+..
T Consensus 141 ~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 141 PN---EGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 22 25677889999999999999999888776543
No 74
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.07 E-value=5.1e-09 Score=104.09 Aligned_cols=163 Identities=21% Similarity=0.138 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccch
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTING 508 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g 508 (705)
+.+++.+|.++...|++++|...|.++++..++. ..+..++|.++...|++++ +.+++++ .|++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~--- 104 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS---ADAHAALAVVFQTEMEPKLADEEYRKALAS------DSRN--- 104 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC---
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCc---
Confidence 7788899999999999999999999999987653 3567888999999999877 5555552 2331
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcC
Q 005266 509 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 588 (705)
Q Consensus 509 ~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~g 588 (705)
+.+++.+|.++...|++++|..++.++++ .+.......++..+|.++...|++++|.+.+++++.+. +
T Consensus 105 ----~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~ 172 (252)
T 2ho1_A 105 ----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ-----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---R 172 (252)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---S
T ss_pred ----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---c
Confidence 56899999999999999999999999976 11113345688999999999999999999999998763 2
Q ss_pred ChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 589 DIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 589 D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
+ ...+...++.++...|++++|.+.++...+
T Consensus 173 ~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 173 N---QPSVALEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred c---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 245667899999999999999998887654
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.07 E-value=6.2e-09 Score=102.75 Aligned_cols=159 Identities=13% Similarity=0.037 Sum_probs=120.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 005266 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (705)
Q Consensus 344 aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~ 423 (705)
+-+++-.+.++...|++++|.++++++++. .|. .+ ..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------~~~---~~---~~--------------------------- 43 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKL----------TNN---QD---SV--------------------------- 43 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------TTT---CC---HH---------------------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc----------cCC---CC---cH---------------------------
Confidence 356777889999999999999999999885 110 00 01
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccc
Q 005266 424 FVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPV 499 (705)
Q Consensus 424 ~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~ 499 (705)
+++.+|.++...|++++|+.+|.+|+++.++ ...+..++|.++...|++++ +.++++
T Consensus 44 -----------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----- 104 (228)
T 4i17_A 44 -----------TAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANAYIGKSAAYRDMKNNQEYIATLTEGIK----- 104 (228)
T ss_dssp -----------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred -----------HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----
Confidence 1225788999999999999999999998776 34568889999999999877 566666
Q ss_pred cccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCCh
Q 005266 500 YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDT 570 (705)
Q Consensus 500 ~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~ 570 (705)
..|++.......+.+|+.+|.++...|++++|...+++++++. .....+.++..+|.+|...|+.
T Consensus 105 -~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 105 -AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-----SKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp -HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-----CCcccHHHHHHHHHHHHHHHHH
Confidence 2344432221135689999999999999999999999997762 1111356899999999887765
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.05 E-value=2.1e-09 Score=120.01 Aligned_cols=169 Identities=18% Similarity=0.120 Sum_probs=141.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccC
Q 005266 429 EACESMIEMLRGQYAHSVGCY-SEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMK 503 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g~~-~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~ 503 (705)
.+..+.+++.+|.++...|++ ++|+.+|++|+++.++. ..+..++|.+|...|++++ +.+|+++ .|
T Consensus 98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~p 168 (474)
T 4abn_A 98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL---VEAWNQLGEVYWKKGDVTSAHTCFSGALTH------CK 168 (474)
T ss_dssp CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------CC
T ss_pred CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CC
Confidence 446788999999999999999 99999999999998764 3468899999999999877 5666552 23
Q ss_pred CccchhhhHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC-------
Q 005266 504 DTINGVREEASLHFAYGLLLMRQ---------QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL------- 567 (705)
Q Consensus 504 ~~~~g~~~qA~al~~lG~~~~~~---------g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l------- 567 (705)
+ +.+++.+|.++... |++++|...+++|+++. . .+ +.++..+|.+|...
T Consensus 169 ~--------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p--~~----~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 169 N--------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-V--LD----GRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp C--------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHHHHHTTCC
T ss_pred C--------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-C--CC----HHHHHHHHHHHHHHHHhhccc
Confidence 3 35899999999999 99999999999999984 2 23 35889999999999
Q ss_pred -CChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 568 -HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 568 -g~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
|++++|.+.|++|+.+... ......++..||.+|...|++++|.+.++.+.+..
T Consensus 234 ~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 234 PKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999988221 11457778899999999999999999999887653
No 77
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.04 E-value=5.4e-09 Score=112.86 Aligned_cols=181 Identities=13% Similarity=0.089 Sum_probs=153.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCh--------------hHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccc
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESK--------------SMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPV 499 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~--------------~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~ 499 (705)
-.|.-+...|++++|+..|.++++..++. .....++.++|.+|...|++++ +.+++.....+
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 34666788999999999999999986542 2345678999999999999877 45555544433
Q ss_pred cccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005266 500 YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 579 (705)
Q Consensus 500 ~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~ 579 (705)
++... .+.+...+|.++...|++++|..++++++..+ ...++..+.+.++..||.+|...|++.+|.+.+..
T Consensus 89 ----~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 89 ----AKSKT---VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFA-KREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp ----CHHHH---HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHH-HHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----cchHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 21111 35678888999999999999999999999998 46888889999999999999999999999999999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 580 SLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 580 Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
++...++.+|.+..+.++..++++|...|++.+|...+.........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999888777654
No 78
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.03 E-value=9.7e-09 Score=112.04 Aligned_cols=217 Identities=6% Similarity=-0.023 Sum_probs=158.1
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 005266 342 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 421 (705)
Q Consensus 342 ~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~ 421 (705)
.++-+|...+.++...|.+++|.+.++++++. .|. .-..|..+..++..+ .....-.+..
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l----------~P~-------~~~a~~~~g~~l~~~---g~d~~eAl~~ 154 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIEL----------NAA-------NYTVWHFRRVLLKSL---QKDLHEEMNY 154 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----------CTT-------CHHHHHHHHHHHHHT---TCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----------Ccc-------CHHHHHHHHHHHHHc---ccCHHHHHHH
Confidence 57788888899999999999999999999985 222 124553222221111 0001111122
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhc
Q 005266 422 SGFVEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIG 497 (705)
Q Consensus 422 ~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~ 497 (705)
.+-+...++..+.+++.+|.++...|++++|+..|.+|+++.++.. .+..++|.++...|++++ +.++++
T Consensus 155 ~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~---~a~~~lg~~~~~~g~~~eAl~~~~~al~--- 228 (382)
T 2h6f_A 155 ITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY---HAWQHRQWVIQEFKLWDNELQYVDQLLK--- 228 (382)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCCTTHHHHHHHHHH---
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH---HHHHHHHHHHHHcCChHHHHHHHHHHHH---
Confidence 2223334556789999999999999999999999999999988753 467889999999999877 777777
Q ss_pred cccccCCccchhhhHHHHHHHHHHHHHH-hcCHHHH-----HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCC--C
Q 005266 498 PVYQMKDTINGVREEASLHFAYGLLLMR-QQDFQEA-----RNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH--D 569 (705)
Q Consensus 498 ~~~~~~~~~~g~~~qA~al~~lG~~~~~-~g~~~eA-----~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg--~ 569 (705)
..|++ +.+|+.+|.++.. .|.+++| +.++++|+.+. -.| ..++..+|.++...| +
T Consensus 229 ---l~P~~-------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~---P~~----~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 229 ---EDVRN-------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV---PHN----ESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp ---HCTTC-------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS---TTC----HHHHHHHHHHHTTTCGGG
T ss_pred ---hCCCC-------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC---CCC----HHHHHHHHHHHHccCccc
Confidence 33442 6799999999999 5665888 58999999884 233 248899999999988 6
Q ss_pred hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 005266 570 TVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 608 (705)
Q Consensus 570 ~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~G 608 (705)
.++|.+.+... +.. +.-.|++..|+++|...|
T Consensus 292 ~~~a~~~~~~~----~~~---p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 292 YPNLLNQLLDL----QPS---HSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp CHHHHHHHHHH----TTT---CCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHh----ccC---CCCHHHHHHHHHHHHHHh
Confidence 78887776553 222 234788899999999986
No 79
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.03 E-value=4e-08 Score=109.02 Aligned_cols=145 Identities=12% Similarity=0.012 Sum_probs=107.1
Q ss_pred hhHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCC--hhhHHHHHHhhccccccCC
Q 005266 430 ACESMIEMLRGQY-A--HSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD--AESSSQAIDLIGPVYQMKD 504 (705)
Q Consensus 430 ~~~a~~~~llG~~-~--~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd--~d~~~~ALeli~~~~~~~~ 504 (705)
+..+.+.+.+|.+ + ...|++++|...|++|++.. -..+..++|.+|.. |. .....+|++.++... ++
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa--~g 316 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-----QPRAELLLGKLYYE-GKWVPADAKAAEAHFEKAV--GR 316 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHH-CSSSCCCHHHHHHHHHTTT--TT
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHh--CC
Confidence 5667777888887 4 57999999999999998653 35568999999985 53 223777777777764 55
Q ss_pred ccchhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH----CCChHHHHHH
Q 005266 505 TINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA----LHDTVQAREI 576 (705)
Q Consensus 505 ~~~g~~~qA~al~~lG~~~~~----~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~----lg~~~qA~~~ 576 (705)
+ +.+++.+|..+.. ..++++|..++++|.+ .|+ ..+...||.+|.. ..|..+|...
T Consensus 317 ~-------~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-----~g~----~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 317 E-------VAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-----NGQ----NSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp C-------HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-----TTC----TTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred C-------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-----hCh----HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 3 6789999988876 3499999999998843 444 3477899999986 3488999999
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 005266 577 LRSSLTLAKKLYDIPTQIWALSVLTALYQQ 606 (705)
Q Consensus 577 ~~~Al~LArk~gD~~~q~~al~~L~~l~~~ 606 (705)
|+.|.. .|+. .+...|+.+...
T Consensus 381 ~~~A~~----~g~~----~a~~~l~~l~~~ 402 (452)
T 3e4b_A 381 SQLAKA----QDTP----EANDLATQLEAP 402 (452)
T ss_dssp HHHHHT----TCCH----HHHHHHHHHHTT
T ss_pred HHHHHH----CCCH----HHHHHHHHHHHh
Confidence 888764 4663 344556666443
No 80
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.00 E-value=9.9e-09 Score=93.42 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~ 510 (705)
..+.++.-+|..+...|+|++|+.+|.+|+++.++.
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~-------------------------------------------- 41 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN-------------------------------------------- 41 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------------------------------
Confidence 346677789999999999999999999999874431
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
+.+|+++|.+++..|++++|+..+++|+++...........+.++..||.++..+|++++|.+.|++|+..
T Consensus 42 --~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 42 --ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35789999999999999999999999999975445566778899999999999999999999999999875
No 81
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.98 E-value=4.9e-06 Score=93.23 Aligned_cols=172 Identities=15% Similarity=0.115 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCc
Q 005266 430 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 430 ~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~ 505 (705)
|..+.++..+|.+....|++++|...|++++++.++.. +.+..+.+..+.+.|+.+. +.+|++ .|..
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-------~~~~ 388 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKARE-------DART 388 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------CTTC
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------ccCC
Confidence 45688899999999999999999999999999876543 2355666666666666555 444443 2221
Q ss_pred cchhhhHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLL-LMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~-~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
. ...+...|.. +...|++++|+..+++|++.. . .+ ..++..+|+++...|+.++|+..|++|+...
T Consensus 389 ~------~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p--~~----~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 389 R------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-G--DI----PEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp C------THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-T--TC----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred c------hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-C--CC----HHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 1 1234444433 335899999999999999985 2 23 2467889999999999999999999998753
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 585 KKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 585 rk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
...++....+|.. ..+.....|+.+.+......+.+...
T Consensus 456 ~~~~~~~~~lw~~--~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 456 SLPPEKSGEIWAR--FLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CSCGGGCHHHHHH--HHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 2222233445533 45667788999988887777766654
No 82
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.98 E-value=3.9e-08 Score=97.78 Aligned_cols=172 Identities=12% Similarity=0.001 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccch
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTING 508 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g 508 (705)
+...+.+|..+...|++++|+..|.++++..++......+..++|.++...|++++ +.++++ .+|++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~------~~P~~~~- 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR------LNPTHPN- 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCTT-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------HCcCCCc-
Confidence 45678899999999999999999999999988766566789999999999999876 445444 3454322
Q ss_pred hhhHHHHHHHHHHHHHH------------------hcCHHHHHHHHHHHHHHHHhcccCHHHH------------HHHHH
Q 005266 509 VREEASLHFAYGLLLMR------------------QQDFQEARNRLAKGLQIAHNHMGNLQLV------------SQYLT 558 (705)
Q Consensus 509 ~~~qA~al~~lG~~~~~------------------~g~~~eA~~~L~eAL~la~~e~gn~~l~------------a~aL~ 558 (705)
-..+++.+|.++.. .|++++|+..++++++.. . .+..-.. +....
T Consensus 77 ---~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P-~~~~a~~a~~~l~~~~~~~~~~~~ 151 (225)
T 2yhc_A 77 ---IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-P-NSQYTTDATKRLVFLKDRLAKYEY 151 (225)
T ss_dssp ---HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-T-TCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-c-CChhHHHHHHHHHHHHHHHHHHHH
Confidence 13478888888876 578999999999998874 2 2211111 12235
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 005266 559 ILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEY 619 (705)
Q Consensus 559 ~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~ 619 (705)
.+|.+|...|++.+|...++.++... ++.+....++..+|.+|...|++++|.+.+..
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDY---PDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHC---cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 78999999999999999999998653 33333456788899999999999999986654
No 83
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.97 E-value=6.8e-09 Score=101.99 Aligned_cols=164 Identities=16% Similarity=0.171 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
..+..++.+|..+...|++++|...|.++++..++. ..+..++|.++...|++++ +.+++++ .|+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~-- 89 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED---AIPYINFANLLSSVNELERALAFYDKALEL------DSS-- 89 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT--
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCc--
Confidence 345667789999999999999999999999876654 3567888999999999877 4555552 233
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 586 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk 586 (705)
.+.+++.+|.++...|++++|...+.++++.. . .+ ..++..+|.++...|++++|.+.+++++.+..
T Consensus 90 -----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~--~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~- 156 (243)
T 2q7f_A 90 -----AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-M--EN----GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE- 156 (243)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-C--CS----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-
T ss_pred -----chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C--CC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-
Confidence 25689999999999999999999999999885 2 23 24788999999999999999999999987632
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 587 LYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 587 ~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
+ ...+...+|.++...|++++|.+.++...+.
T Consensus 157 --~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 157 --N---DTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp --T---CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred --c---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 2446678999999999999999998877665
No 84
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.94 E-value=7.1e-06 Score=91.92 Aligned_cols=167 Identities=15% Similarity=0.019 Sum_probs=123.3
Q ss_pred hhhhHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHhhCChhh----
Q 005266 428 QEACESMIEMLRGQYAHS-------VGCYS-------EAAFHYVEAAK-ITESKSMQAMCHAYAAVSYFCIGDAES---- 488 (705)
Q Consensus 428 ~~~~~a~~~~llG~~~~~-------~g~~~-------eA~~~f~~Al~-l~~~~~g~a~a~~nlalv~l~~gd~d~---- 488 (705)
..|..+.+.+.+|.++.. .|+++ +|...|++|++ +.++.. ....+.+.++...|+++.
T Consensus 267 ~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~---~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM---LLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH---HHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHhcCCHHHHHHH
Confidence 345678899999999987 79987 89999999997 666532 345566777777888776
Q ss_pred HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH-HHHC
Q 005266 489 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL-ALAL 567 (705)
Q Consensus 489 ~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i-~~~l 567 (705)
+++++++ .|.+ -+.+|..+|....++|++++|+..+.+|++.. . . + ...+...+.+ +...
T Consensus 344 ~~~al~~------~p~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~-~-~----~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 344 YNRLLAI------EDID------PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R-T-R----HHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHS------SSSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-T-C-C----THHHHHHHHHHHHHT
T ss_pred HHHHhCc------cccC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-C-C-c----hHHHHHHHHHHHHHc
Confidence 6666662 2332 12478888999999999999999999998763 1 1 2 1223333444 3468
Q ss_pred CChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 568 HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 568 g~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
|+.++|.+.|+.|+... ++. ..+| ..+++++...|+.++|...++.+..
T Consensus 405 ~~~~~A~~~~e~al~~~---p~~-~~~~--~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY---GDI-PEYV--LAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp CCHHHHHHHHHHHHHHH---TTC-HHHH--HHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHC---CCC-HHHH--HHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 99999999999999764 332 2344 6788999999999999999988765
No 85
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.91 E-value=6.4e-08 Score=98.15 Aligned_cols=161 Identities=18% Similarity=0.112 Sum_probs=129.6
Q ss_pred HhhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh----hCChhh----HHHHH
Q 005266 426 EAQEACESMIEMLRGQYAHS----VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC----IGDAES----SSQAI 493 (705)
Q Consensus 426 ~a~~~~~a~~~~llG~~~~~----~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~----~gd~d~----~~~AL 493 (705)
.+.++..+.+++.+|.++.. .|++++|..+|++|+++. ...+..++|.+|.. .+++++ +.+|+
T Consensus 31 ~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 105 (273)
T 1ouv_A 31 KACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC 105 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH
Confidence 34445678888999999999 999999999999998873 35678889999998 777665 45554
Q ss_pred HhhccccccCCccchhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH---
Q 005266 494 DLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA--- 566 (705)
Q Consensus 494 eli~~~~~~~~~~~g~~~qA~al~~lG~~~~~----~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~--- 566 (705)
+. + -+.+++.+|.++.. .+++++|..++++|++. ++ ..++..+|.+|..
T Consensus 106 ~~--------~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~----~~a~~~lg~~~~~~~~ 161 (273)
T 1ouv_A 106 DL--------K-------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-----ND----GDGCTILGSLYDAGRG 161 (273)
T ss_dssp HT--------T-------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHHHHTSS
T ss_pred Hc--------C-------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-----Cc----HHHHHHHHHHHHcCCC
Confidence 42 1 15689999999999 99999999999998764 23 3578899999999
Q ss_pred -CCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH----cCCchHHHHHHHHHHHH
Q 005266 567 -LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ----LGDRGNEMENDEYRRKK 623 (705)
Q Consensus 567 -lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~----~Gd~~~A~e~~~~~~~~ 623 (705)
.+++++|.+.+++|+.. ++ ..+...||.+|.. .|++++|.++++...+.
T Consensus 162 ~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 162 TPKDLKKALASYDKACDL----KD----SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp SCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 99999999999998865 44 4667789999999 99999999988877654
No 86
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.91 E-value=2.2e-08 Score=109.16 Aligned_cols=149 Identities=10% Similarity=-0.008 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCc
Q 005266 431 CESMIEMLRGQYAHSVGC-YSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~-~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~ 505 (705)
..+.+++.+|.++...|+ +++|+..|.+|+++.++.. .+..++|.++...|++++ +.+|++ ..|++
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~---~a~~~~g~~~~~~g~~~eAl~~~~kal~------ldP~~ 199 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY---QVWHHRRVLVEWLRDPSQELEFIADILN------QDAKN 199 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCCTTHHHHHHHHHH------HCTTC
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHH------hCccC
Confidence 344555555555555554 5555555555555544321 234444555555555444 444444 11221
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH-CCChHHH-----HHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA-LHDTVQA-----REILRS 579 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~-lg~~~qA-----~~~~~~ 579 (705)
+.+|+.+|.++...|++++|+.++++++++. -.| ..+++.+|.++.. .|..++| .+++++
T Consensus 200 -------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~----~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~ 265 (382)
T 2h6f_A 200 -------YHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRN----NSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265 (382)
T ss_dssp -------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence 3345555555555555555555555555542 112 1344555555555 3332444 244444
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q 005266 580 SLTLAKKLYDIPTQIWALSVLTALYQQLG 608 (705)
Q Consensus 580 Al~LArk~gD~~~q~~al~~L~~l~~~~G 608 (705)
|+.+ .+.-..+...++.++...|
T Consensus 266 Al~l------~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 266 MIKL------VPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHH------STTCHHHHHHHHHHHTTTC
T ss_pred HHHH------CCCCHHHHHHHHHHHHccC
Confidence 4443 4444555555555555444
No 87
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.90 E-value=1.3e-07 Score=94.63 Aligned_cols=166 Identities=12% Similarity=0.029 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
..+.++..+|.++...|++++|..+|.+++++.++. ..+..++|.++...|++++ +.+++++ .|++
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~- 144 (275)
T 1xnf_A 75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQD------DPND- 144 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC-
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc---cHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCC-
Confidence 457788889999999999999999999999887654 2567888888988888776 4555552 2332
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 586 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk 586 (705)
...+...+. ....|++++|...+.+++... . .+. ....++.++...++.++|.+.++.++....+
T Consensus 145 ------~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~-~--~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 209 (275)
T 1xnf_A 145 ------PFRSLWLYL-AEQKLDEKQAKEVLKQHFEKS-D--KEQ-----WGWNIVEFYLGNISEQTLMERLKADATDNTS 209 (275)
T ss_dssp ------HHHHHHHHH-HHHHHCHHHHHHHHHHHHHHS-C--CCS-----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred ------hHHHHHHHH-HHHhcCHHHHHHHHHHHHhcC-C--cch-----HHHHHHHHHHHhcCHHHHHHHHHHHhccccc
Confidence 122333333 366789999999999888774 2 121 1234777888888888898888888776555
Q ss_pred cCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 587 LYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 587 ~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
.. +....++..+|.+|...|++++|.+.++.....
T Consensus 210 ~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 210 LA--EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cc--ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 32 123567788999999999999999988877654
No 88
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=6e-08 Score=95.99 Aligned_cols=171 Identities=17% Similarity=0.089 Sum_probs=131.2
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCC-hhhHHHHHHhhccccccCCc
Q 005266 427 AQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD-AESSSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 427 a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd-~d~~~~ALeli~~~~~~~~~ 505 (705)
+.+...+.+++.+|.++...+++++|...|++|++. +...+..++|.+|.. +. .....+|++.++.... +++
T Consensus 12 aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~g~ 84 (212)
T 3rjv_A 12 QAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-AGS 84 (212)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-TTC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-CCC
Confidence 444577889999999999999999999999999875 234568999999988 51 1124555555444322 232
Q ss_pred cchhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH----CCChHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA----LHDTVQAREIL 577 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~----~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~----lg~~~qA~~~~ 577 (705)
+.+++.+|.++.. .+++++|..++++|.+ .|+....+.++..||.+|.. .++.++|.+++
T Consensus 85 -------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-----~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 85 -------KSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-----DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp -------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-----STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred -------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-----cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 6689999999988 8899999999999843 44433446789999999999 88999999999
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHc-C-----CchHHHHHHHHHHHH
Q 005266 578 RSSLTLAKKLYDIPTQIWALSVLTALYQQL-G-----DRGNEMENDEYRRKK 623 (705)
Q Consensus 578 ~~Al~LArk~gD~~~q~~al~~L~~l~~~~-G-----d~~~A~e~~~~~~~~ 623 (705)
++|..+ -++ ..+...||.+|..- | |+++|.++++.+.+.
T Consensus 153 ~~A~~~---~~~----~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 153 KGSSSL---SRT----GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHT---SCT----THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHc---CCC----HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 999755 244 33678899999764 3 889999988877654
No 89
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.88 E-value=3.3e-07 Score=95.53 Aligned_cols=252 Identities=10% Similarity=0.008 Sum_probs=164.4
Q ss_pred HHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHH
Q 005266 55 LKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNS 134 (705)
Q Consensus 55 ~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~ 134 (705)
..|.+|+..|...+++. ...-.+-+.++..+++++|...|++..+...+++ .. .+.+ ....
T Consensus 9 ~~~~g~y~~ai~~~~~~------~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~-------~~~~--~a~~ 69 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRV------KPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SS-------APEL--QAVR 69 (291)
T ss_dssp HHHTTCHHHHHHHHHHS------CCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TS-------CHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHhc------ccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cC-------ChhH--HHHH
Confidence 46889999999999853 2222344567888899999999988777643332 11 2222 2555
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHhhhcCccccccccc
Q 005266 135 QLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLG 214 (705)
Q Consensus 135 ~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~~~~~~~~~~~~~G 214 (705)
.+|..+...+++..|++.|+++++. ..++....+.+.++.++... .++++++..+.
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~--~~~P~~~~~~~~la~~~~~~---g~~~~Al~~l~------------------- 125 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSR--SVDVTNTTFLLMAASIYFYD---QNPDAALRTLH------------------- 125 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHS--CCCCSCHHHHHHHHHHHHHT---TCHHHHHHHHT-------------------
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhc--ccCCCCHHHHHHHHHHHHHC---CCHHHHHHHHh-------------------
Confidence 6899999999999999999987653 11344667777777766444 22222211110
Q ss_pred chhhhhHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhhHHHHHHHHHHHH
Q 005266 215 LLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQR 294 (705)
Q Consensus 215 ~~~~~E~l~v~~~L~vc~~~~~~~~v~~l~~~l~~~~qk~~~~q~l~~~l~~l~~~L~~~~~~~~~~~~l~~~~~~lq~~ 294 (705)
T Consensus 126 -------------------------------------------------------------------------------- 125 (291)
T 3mkr_A 126 -------------------------------------------------------------------------------- 125 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhccCCCCCccccccccccCCcccccccccccCCCCcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 005266 295 LRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTI 374 (705)
Q Consensus 295 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~WLpk~~~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i 374 (705)
. | ..+-+++..+.++...|.+++|.+.++++++.
T Consensus 126 --~----------~---------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 126 --Q----------G---------------------------------DSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp --T----------C---------------------------------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred --C----------C---------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 0 0 01124455567777889999999999998875
Q ss_pred HHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 005266 375 QDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVGCYSEAAF 454 (705)
Q Consensus 375 ~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g~~~eA~~ 454 (705)
.|.. .+ . .+. ..+..++...|++++|..
T Consensus 160 ---------~p~~---------~~-----~--~l~---------------------------~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 160 ---------DEDA---------TL-----T--QLA---------------------------TAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp ---------CTTC---------HH-----H--HHH---------------------------HHHHHHHHCTTHHHHHHH
T ss_pred ---------CcCc---------HH-----H--HHH---------------------------HHHHHHHhCchHHHHHHH
Confidence 1210 11 0 000 001112234588889999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHH
Q 005266 455 HYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQ 530 (705)
Q Consensus 455 ~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~ 530 (705)
.|+++++..++. ..+..++|.++...|++++ +.++++ ..|++ +.+++++|.++...|+++
T Consensus 188 ~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~------~~p~~-------~~~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 188 IFQEMADKCSPT---LLLLNGQAACHMAQGRWEAAEGVLQEALD------KDSGH-------PETLINLVVLSQHLGKPP 251 (291)
T ss_dssp HHHHHHHHSCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTC-------HHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCC-------HHHHHHHHHHHHHcCCCH
Confidence 999888886653 3467778888888888777 566665 23442 668999999999999987
Q ss_pred H-HHHHHHHHHHHH
Q 005266 531 E-ARNRLAKGLQIA 543 (705)
Q Consensus 531 e-A~~~L~eAL~la 543 (705)
+ +.+++++++++.
T Consensus 252 eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 252 EVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 6 578889888873
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.86 E-value=8.4e-08 Score=94.38 Aligned_cols=161 Identities=9% Similarity=-0.030 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHH----------------HHHHHHhhCChhh----HHHHH
Q 005266 434 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY----------------AAVSYFCIGDAES----SSQAI 493 (705)
Q Consensus 434 ~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~n----------------lalv~l~~gd~d~----~~~AL 493 (705)
......|..+...|++++|+.+|.+++++.++.. .+..+ +|.++...|++++ +.+++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT---EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH---HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh---HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455789999999999999999999999976532 23445 9999999999877 67777
Q ss_pred HhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChH--
Q 005266 494 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTV-- 571 (705)
Q Consensus 494 eli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~-- 571 (705)
+ ..|++ +.+++.+|.++...|++++|...+++++++. -.| ..++..||.+|+..|+.+
T Consensus 82 ~------~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~----~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 82 Q------KAPNN-------VDCLEACAEMQVCRGQEKDALRMYEKILQLE---ADN----LAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp H------HCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHHHHHHHH
T ss_pred H------HCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC----HHHHHHHHHHHHHHhHHHHH
Confidence 6 33443 5689999999999999999999999999983 233 358899999998776443
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 572 QAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 572 qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
.+...++.+ -......++...+|..+...|++++|.++++.+.+..
T Consensus 142 ~~~~~~~~~-------~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 142 KLETDYKKL-------SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHC----------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHH-------hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 233333333 2333345566677888888999999999888776653
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=6.9e-09 Score=97.15 Aligned_cols=142 Identities=11% Similarity=0.063 Sum_probs=104.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHH
Q 005266 439 RGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEAS 514 (705)
Q Consensus 439 lG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~ 514 (705)
||.++..+|++++|+..|++|+...++ ...+..++|.+|...|+++. +.++++ ..|++ +.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~---~~~~~~~la~~y~~~~~~~~A~~~~~~al~------~~p~~-------~~ 66 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ---KSIKGFYFAKLYYEAKEYDLAKKYICTYIN------VQERD-------PK 66 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH---HHTTHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTC-------HH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCC-------HH
Confidence 788888899999999999988766443 34557788999998898877 666666 23442 56
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHH-HHHHHHHHHHcCChhhH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREI-LRSSLTLAKKLYDIPTQ 593 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~-~~~Al~LArk~gD~~~q 593 (705)
+|+.+|.++...|++++|...+++++++. -.+ ..++..||.+|...|+..+|.+. +++|+.+. ++ -
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~---P~---~ 133 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVELN---PTQ----KDLVLKIAELLCKNDVTDGRAKYWVERAAKLF---PG---S 133 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS---TT---C
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC---cC---C
Confidence 89999999999999999999999999883 223 34788999999999998876655 58888763 22 2
Q ss_pred HHHHHHHHHHHHHcCC
Q 005266 594 IWALSVLTALYQQLGD 609 (705)
Q Consensus 594 ~~al~~L~~l~~~~Gd 609 (705)
..+....++++...|+
T Consensus 134 ~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 134 PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 3345567788887775
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=9.1e-08 Score=99.29 Aligned_cols=170 Identities=12% Similarity=0.048 Sum_probs=133.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchh
Q 005266 430 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 430 ~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~ 509 (705)
+..+..+..+|..+...|++++|+..|++++++.++.. .+..++|.+++..|++++....++.+-. ..|+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~----- 183 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG---EIGLLLAETLIALNRSEDAEAVLXTIPL--QDQD----- 183 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH---HHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCS-----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch---hHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcc-----
Confidence 45667788999999999999999999999999988753 5688999999999997664444443222 2243
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
-...+...+..+...++..+|...+++++... -.| ..++..+|.++...|++++|.+.+++++.......
T Consensus 184 --~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~---P~~----~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~- 253 (287)
T 3qou_A 184 --TRYQGLVAQIELLXQAADTPEIQQLQQQVAEN---PED----AALATQLALQLHQVGRNEEALELLFGHLRXDLTAA- 253 (287)
T ss_dssp --HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG-
T ss_pred --hHHHHHHHHHHHHhhcccCccHHHHHHHHhcC---Ccc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc-
Confidence 13466677778889999999999999998883 233 24788999999999999999999999998743332
Q ss_pred hhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 590 IPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 590 ~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
...+...|+.++...|+.++|...+.....
T Consensus 254 ---~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 254 ---DGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ---GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 245667899999999999999988876654
No 93
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.80 E-value=7.5e-07 Score=88.98 Aligned_cols=215 Identities=11% Similarity=0.006 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 005266 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (705)
Q Consensus 343 ~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~ 422 (705)
.+-+++..+.++...|++++|.+++++++.. .|.. ...|.....++ ....
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------~~~~-------~~~~~~la~~~-------------~~~~ 91 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAI----------RPDM-------PEVFNYLGIYL-------------TQAG 91 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CCCC-------HHHHHHHHHHH-------------HHTT
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----------CCCc-------HHHHHHHHHHH-------------HHcc
Confidence 4667888899999999999999999999985 2221 12331111111 1112
Q ss_pred hhHHh---------hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----H
Q 005266 423 GFVEA---------QEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----S 489 (705)
Q Consensus 423 ~~~~a---------~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~ 489 (705)
++..| ..+..+.++..+|.++...|++++|...|.+++++.++... ...+.++. ...|++++ +
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~-~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF---RSLWLYLA-EQKLDEKQAKEVL 167 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHH-HHHHCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH---HHHHHHHH-HHhcCHHHHHHHH
Confidence 22222 23456889999999999999999999999999999877541 22233333 34577655 3
Q ss_pred HHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCC
Q 005266 490 SQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD 569 (705)
Q Consensus 490 ~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~ 569 (705)
.+++.. .|++. ..+..+..+...+++++|...+.++++... . .....+.++..+|.+|...|+
T Consensus 168 ~~~~~~------~~~~~--------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 168 KQHFEK------SDKEQ--------WGWNIVEFYLGNISEQTLMERLKADATDNT-S--LAEHLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp HHHHHH------SCCCS--------THHHHHHHHTTSSCHHHHHHHHHHHCCSHH-H--HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhc------CCcch--------HHHHHHHHHHHhcCHHHHHHHHHHHhcccc-c--ccccccHHHHHHHHHHHHcCC
Confidence 344442 23221 123456667788899999999999877652 1 222336789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHH
Q 005266 570 TVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 617 (705)
Q Consensus 570 ~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~ 617 (705)
+++|.+.++.++.+. -.+.. ..+.++...|+.++|.+.+
T Consensus 231 ~~~A~~~~~~al~~~--p~~~~-------~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 231 LDSATALFKLAVANN--VHNFV-------EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTC--CTTCH-------HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCC--chhHH-------HHHHHHHHHHHHHhhHHHH
Confidence 999999999998763 11221 1244556667777776655
No 94
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.78 E-value=4.4e-07 Score=84.30 Aligned_cols=169 Identities=15% Similarity=0.118 Sum_probs=138.1
Q ss_pred hHHHHHHHhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchh
Q 005266 3 AVAEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (705)
Q Consensus 3 ~~~~~L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~ 82 (705)
..+..+..+|..+...+++..|+.+++.+++..+. . +.+...+|.+++ ..+++++|...++++..+.+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~--~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~--- 76 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF---D--VDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNV--- 76 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC---C--HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCH---
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---C--hHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCH---
Confidence 34567788899999999999999999999976552 1 456677777665 68999999999999988766655
Q ss_pred hhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 005266 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATE 162 (705)
Q Consensus 83 dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~ 162 (705)
.++..++.+|...|++..|...++++++..+ .+.. .++.+|.++...|++..|++.++++...
T Consensus 77 ----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 139 (186)
T 3as5_A 77 ----KVATVLGLTYVQVQKYDLAVPLLIKVAEANP-------INFN---VRFRLGVALDNLGRFDEAIDSFKIALGL--- 139 (186)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-------HhHH---HHHHHHHHHHHcCcHHHHHHHHHHHHhc---
Confidence 6788899999999999999999999999876 2232 5567899999999999999999998876
Q ss_pred cCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHh
Q 005266 163 ISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVW 201 (705)
Q Consensus 163 ~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~ 201 (705)
++....+++.++.++..+ .+++++...+.++...-
T Consensus 140 -~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 140 -RPNEGKVHRAIAFSYEQM---GRHEEALPHFKKANELD 174 (186)
T ss_dssp -CTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHH
T ss_pred -CccchHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcC
Confidence 566788889999988877 78888887777765543
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.78 E-value=5.7e-07 Score=89.25 Aligned_cols=181 Identities=7% Similarity=-0.005 Sum_probs=128.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhh
Q 005266 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (705)
Q Consensus 345 L~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~ 424 (705)
-+++-.+..+...|++++|.+.++++++. .|..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~----------~p~~~------------------------------------ 38 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNR----------YPFGP------------------------------------ 38 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTST------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCh------------------------------------
Confidence 45566677788889999999888888774 12110
Q ss_pred HHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhC---------------ChhhH
Q 005266 425 VEAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG---------------DAESS 489 (705)
Q Consensus 425 ~~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~g---------------d~d~~ 489 (705)
..+.+++.+|.++...|++++|+..|.++++..++......+..++|.++...| +....
T Consensus 39 ------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (225)
T 2yhc_A 39 ------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQA 112 (225)
T ss_dssp ------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHH
T ss_pred ------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHH
Confidence 011233467999999999999999999999998886655567778888776532 11225
Q ss_pred HHHHHhhcccc-ccCCccchhhh----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Q 005266 490 SQAIDLIGPVY-QMKDTINGVRE----------EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLT 558 (705)
Q Consensus 490 ~~ALeli~~~~-~~~~~~~g~~~----------qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~ 558 (705)
.+|+..++.+. .+|++...... .+...+.+|..++.+|++++|+..++++++.. . ++ .....++.
T Consensus 113 ~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p--~~-~~~~~a~~ 188 (225)
T 2yhc_A 113 RAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-P--DT-QATRDALP 188 (225)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-T--TS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-c--CC-CccHHHHH
Confidence 55555555442 34665332200 12234788999999999999999999999885 2 23 34557999
Q ss_pred HHHHHHHHCCChHHHHHHHHHHH
Q 005266 559 ILGNLALALHDTVQAREILRSSL 581 (705)
Q Consensus 559 ~LG~i~~~lg~~~qA~~~~~~Al 581 (705)
.+|.+|..+|+.++|.+.++...
T Consensus 189 ~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 189 LMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Confidence 99999999999999999988654
No 96
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.77 E-value=1.1e-07 Score=105.40 Aligned_cols=159 Identities=12% Similarity=-0.020 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSV----GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~----g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~ 506 (705)
..+..++.+|.++... +++++|...|++|+ . +-..+..++|.+|..........+|++.++.... +++
T Consensus 211 ~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~----g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g~- 282 (452)
T 3e4b_A 211 VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--P----GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-ADQ- 282 (452)
T ss_dssp SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--G----GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TTC-
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--C----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CCC-
Confidence 4456668899998766 79999999999987 2 2344688999885531112226666776665532 221
Q ss_pred chhhhHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH----CCChHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQ-----DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA----LHDTVQAREIL 577 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g-----~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~----lg~~~qA~~~~ 577 (705)
+.+++.+|.++. .| ++++|..++++|. .|+ ..+...||.+|.. ..|.++|.+.|
T Consensus 283 ------~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa------~g~----~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 345 (452)
T 3e4b_A 283 ------PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV------GRE----VAADYYLGQIYRRGYLGKVYPQKALDHL 345 (452)
T ss_dssp ------HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT------TTC----HHHHHHHHHHHHTTTTSSCCHHHHHHHH
T ss_pred ------HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh------CCC----HHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 668999999887 66 9999999999885 234 3578899999888 33899999999
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHH----cCCchHHHHHHHHHHH
Q 005266 578 RSSLTLAKKLYDIPTQIWALSVLTALYQQ----LGDRGNEMENDEYRRK 622 (705)
Q Consensus 578 ~~Al~LArk~gD~~~q~~al~~L~~l~~~----~Gd~~~A~e~~~~~~~ 622 (705)
+.|.. .|+ ..+...||.+|.. ..|+.+|..++..+.+
T Consensus 346 ~~Aa~----~g~----~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 346 LTAAR----NGQ----NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHT----TTC----TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh----hCh----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 98875 455 4456688999874 4477888887776654
No 97
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.75 E-value=2.4e-07 Score=82.65 Aligned_cols=121 Identities=15% Similarity=0.041 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhh
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
.+..+..+|..+...|++++|+.+|.+|+++.++.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------------------------------------------- 37 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--------------------------------------------- 37 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------------------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------------------------------------
Confidence 45677789999999999999999999988875432
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
+.+|+.+|.++...|++++|...+++++++. -.+ ..++..+|.++..+|++++|.+.+++++.+..+.++.+
T Consensus 38 -~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p 109 (126)
T 3upv_A 38 -ARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNF----VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS 109 (126)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCc----HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCch
Confidence 3478888888889999999999999998873 222 35788899999999999999999999998886666655
Q ss_pred hHHHHHHHHHHHHH
Q 005266 592 TQIWALSVLTALYQ 605 (705)
Q Consensus 592 ~q~~al~~L~~l~~ 605 (705)
....+...|+++..
T Consensus 110 ~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 110 SAREIDQLYYKASQ 123 (126)
T ss_dssp THHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 55556666666554
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.74 E-value=8.3e-08 Score=89.73 Aligned_cols=141 Identities=9% Similarity=0.076 Sum_probs=114.1
Q ss_pred hHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHH
Q 005266 11 LADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFS 90 (705)
Q Consensus 11 lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~ 90 (705)
|+.-+++.+++..||.+++.++. .+...+.+.+.+|++++ ..+++++|+.+|++++.+.+..+ .+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~-----~~p~~~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~p~~~-------~a~~ 69 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP-----SPRQKSIKGFYFAKLYY-EAKEYDLAKKYICTYINVQERDP-------KAHR 69 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC-----SHHHHHTTHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCH-------HHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcc-----cCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCH-------HHHH
Confidence 45557788999999999999986 34456778889998765 57999999999999999988887 8999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHhhcCCchHH
Q 005266 91 LLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISA-LQSGYVCATEISYPDLQ 169 (705)
Q Consensus 91 lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~-L~~~~~~A~~~~~~~~~ 169 (705)
.|+.+|...|++..|...++++++..+. +.. .++.+|.++...+++..|.+. +++..++ ++....
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~-------~~~---~~~~la~~~~~~~~~~~aa~~~~~~al~l----~P~~~~ 135 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNPT-------QKD---LVLKIAELLCKNDVTDGRAKYWVERAAKL----FPGSPA 135 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHH---HHHHHHHHHHHHCSSSSHHHHHHHHHHHH----STTCHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCC-------CHH---HHHHHHHHHHHcCChHHHHHHHHHHHHHh----CcCCHH
Confidence 9999999999999999999999999883 333 566789999999999776665 6887776 777777
Q ss_pred HHHHHHHHH
Q 005266 170 MFFATAILH 178 (705)
Q Consensus 170 ~~~~La~~~ 178 (705)
++...+.++
T Consensus 136 ~~~l~~~ll 144 (150)
T 4ga2_A 136 VYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666544
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.74 E-value=1.7e-07 Score=88.74 Aligned_cols=105 Identities=12% Similarity=0.045 Sum_probs=81.8
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCcc
Q 005266 427 AQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 427 a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~ 506 (705)
..+|..+.+++.+|..+...|++++|+.+|.+++++.++.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~---------------------------------------- 69 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---------------------------------------- 69 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------------------------
Confidence 3456778899999999999999999999999999875542
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
+.+|+.+|.++...|++++|...+++|+++. -.|+ .++..+|.+|..+|++++|.+.|++++.+.
T Consensus 70 ------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~----~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 70 ------VDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDY----TPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCC----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3467777888888888888888888887773 2232 367778888888888888888888887764
No 100
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=7.1e-08 Score=93.55 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccc
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 507 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~ 507 (705)
++..++.+|..+...|++++|...|.+++ .+ ...+..++|.++...|++++ +.+++++ .|+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~~--- 69 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP----HSRICFNIGCMYTILKNMTEAEKAFTRSINR------DKH--- 69 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT---
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------Ccc---
Confidence 45567889999999999999999999985 22 23578999999999999877 5666663 233
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc----------CHHHHHHHHHHHHHHHHHCCChHHHHHHH
Q 005266 508 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG----------NLQLVSQYLTILGNLALALHDTVQAREIL 577 (705)
Q Consensus 508 g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g----------n~~l~a~aL~~LG~i~~~lg~~~qA~~~~ 577 (705)
.+.+++.+|.++...|++++|...+++++++. .... .....+.++..+|.+|...|++++|.+.+
T Consensus 70 ----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 70 ----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----chHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 25689999999999999999999999999985 2222 12234578999999999999999999999
Q ss_pred HHHHHHH
Q 005266 578 RSSLTLA 584 (705)
Q Consensus 578 ~~Al~LA 584 (705)
+.++.+.
T Consensus 145 ~~al~~~ 151 (213)
T 1hh8_A 145 ALATSMK 151 (213)
T ss_dssp HHHHTTC
T ss_pred HHHHHcC
Confidence 9998763
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.74 E-value=3.3e-07 Score=80.12 Aligned_cols=127 Identities=23% Similarity=0.232 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchh
Q 005266 434 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 434 ~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~ 509 (705)
.+++.+|.++...|++++|...|.++++..++. ..+..+++.++...|+++. +.+++.. .|++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~---- 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRS---- 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTC----
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH------CCCc----
Confidence 356789999999999999999999999886653 2456778888888888766 4444442 2321
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
..+++.+|.++...|++++|...+.++++.. . .+ ..++..+|.++...|++++|.+.++.++.+
T Consensus 69 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~--~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 69 ---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-P--RS----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp ---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C--CC----hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 4578889999999999999999999998874 2 22 246788999999999999999999998865
No 102
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.74 E-value=1.7e-07 Score=105.62 Aligned_cols=138 Identities=13% Similarity=0.026 Sum_probs=116.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhH
Q 005266 442 YAHSVGCYSEAAFHYVEAAKITES-----KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREE 512 (705)
Q Consensus 442 ~~~~~g~~~eA~~~f~~Al~l~~~-----~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~q 512 (705)
.+..+|++++|+..|++++.+... ....+.+..|+|.+|..+|++++ +.++|++...+ . +.+... -
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~-l-G~~Hp~---~ 392 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL-Y-HHNNAQ---L 392 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-S-CTTCHH---H
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-c-CCCCHH---H
Confidence 456899999999999999988544 44577889999999999999988 88999987664 1 122222 3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG-NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g-n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
|..++++|.++..+|++++|..++++||.+.....| ++..++..+..|+..+..+|.+++|+.+|..+.+-|
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999866555 456888999999999999999999999999998766
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.73 E-value=5.6e-08 Score=113.61 Aligned_cols=146 Identities=14% Similarity=-0.004 Sum_probs=87.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhH
Q 005266 437 MLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREE 512 (705)
Q Consensus 437 ~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~q 512 (705)
+.+|..+...|++++|+..|.+|+++.++. ..+..++|.++...|++++ +.+|++ ..|++
T Consensus 437 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~------l~P~~------- 500 (681)
T 2pzi_A 437 LMEVRALLDLGDVAKATRKLDDLAERVGWR---WRLVWYRAVAELLTGDYDSATKHFTEVLD------TFPGE------- 500 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HSTTC-------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCC-------
Confidence 356667777777777777777777776553 2346666777777777655 455555 22332
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
+.+|+++|.++...|++++ ...+++|+++. -.+ ..++..+|.++..+|++++|.+.|++|+.+. +.
T Consensus 501 ~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~---P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------P~ 566 (681)
T 2pzi_A 501 LAPKLALAATAELAGNTDE-HKFYQTVWSTN---DGV----ISAAFGLARARSAEGDRVGAVRTLDEVPPTS------RH 566 (681)
T ss_dssp SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS------TT
T ss_pred hHHHHHHHHHHHHcCChHH-HHHHHHHHHhC---Cch----HHHHHHHHHHHHHcCCHHHHHHHHHhhcccC------cc
Confidence 3467777777777777777 77777777662 122 2366777777777777777777777776542 22
Q ss_pred HHHHHHHHHHHHHHcCCchH
Q 005266 593 QIWALSVLTALYQQLGDRGN 612 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~ 612 (705)
-..+...++.++...|++++
T Consensus 567 ~~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 567 FTTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HHHHHHHHHHHTC-------
T ss_pred cHHHHHHHHHHHHccCCCCC
Confidence 24444556666655555433
No 104
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.73 E-value=4.3e-07 Score=83.66 Aligned_cols=137 Identities=12% Similarity=0.024 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccc
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 507 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~ 507 (705)
.+..++.+|..+...|++++|...|.+++++.++. ..+..++|.++...|++++ +.+++++ .|++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~~~~-- 80 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIEL------DKKY-- 80 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC--
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------Cccc--
Confidence 45677789999999999999999999999987653 3456677777777777665 4555552 2321
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc
Q 005266 508 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 587 (705)
Q Consensus 508 g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~ 587 (705)
+.+++.+|.++...|++++|..++.+++++. -.+.. +.....++..+...|++++|.+.+..+..+..+.
T Consensus 81 -----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---p~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 150 (166)
T 1a17_A 81 -----IKGYYRRAASNMALGKFRAALRDYETVVKVK---PHDKD--AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150 (166)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHH--HHHHHHHHHHHHHHHHHHHHHHcccchHHHhccc
Confidence 4577778888888888888888888887763 22322 2334555566777778888888887777777665
Q ss_pred CC
Q 005266 588 YD 589 (705)
Q Consensus 588 gD 589 (705)
+.
T Consensus 151 ~~ 152 (166)
T 1a17_A 151 DI 152 (166)
T ss_dssp CC
T ss_pred ch
Confidence 53
No 105
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.71 E-value=2e-07 Score=84.61 Aligned_cols=104 Identities=12% Similarity=0.100 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC-h
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD-I 590 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD-~ 590 (705)
.|.++..+|.+++.+|+|++|+.++++|+++. . .+ +.++..+|.+|..+|++++|.+.++.|+.+..+... .
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p--~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-P--SN----ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--CC----HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence 57899999999999999999999999999983 2 23 458899999999999999999999999999988754 4
Q ss_pred hhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 591 PTQIWALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 591 ~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
...+.++..+|.++...|++++|.+.++....
T Consensus 80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45567889999999999999999998887654
No 106
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.69 E-value=7.9e-07 Score=92.62 Aligned_cols=186 Identities=11% Similarity=0.001 Sum_probs=119.1
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhh
Q 005266 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (705)
Q Consensus 345 L~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~ 424 (705)
.+....+..+...|+.++|.+.+++.+.. +..|.- -..|.... .+.. ...++
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~--------~~~P~~-------~~~~~~la-----------~~~~--~~g~~ 117 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSR--------SVDVTN-------TTFLLMAA-----------SIYF--YDQNP 117 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHS--------CCCCSC-------HHHHHHHH-----------HHHH--HTTCH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhc--------ccCCCC-------HHHHHHHH-----------HHHH--HCCCH
Confidence 44555667777888888888877777652 111221 11221000 0111 12233
Q ss_pred HHhhh----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH--HHh--hCChhh----HHHH
Q 005266 425 VEAQE----ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS--YFC--IGDAES----SSQA 492 (705)
Q Consensus 425 ~~a~~----~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv--~l~--~gd~d~----~~~A 492 (705)
..|.+ +..+.++..+|.++..+|++++|...|+++++..++.. ..+++.. .+. .|++++ +.++
T Consensus 118 ~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----~~~l~~a~~~l~~~~~~~~eA~~~~~~~ 192 (291)
T 3mkr_A 118 DAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-----LTQLATAWVSLAAGGEKLQDAYYIFQEM 192 (291)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-----HHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 33322 35567888899999999999999999999998877643 2233222 222 244444 3444
Q ss_pred HHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHH
Q 005266 493 IDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQ 572 (705)
Q Consensus 493 Leli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~q 572 (705)
++ ..|++ +.+|+.+|.++...|++++|...+++++++. -.| +.++..+|.++...|+..+
T Consensus 193 l~------~~p~~-------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~---p~~----~~~l~~l~~~~~~~g~~~e 252 (291)
T 3mkr_A 193 AD------KCSPT-------LLLLNGQAACHMAQGRWEAAEGVLQEALDKD---SGH----PETLINLVVLSQHLGKPPE 252 (291)
T ss_dssp HH------HSCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHTTCCHH
T ss_pred HH------hCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcCCCHH
Confidence 44 23442 5688999999999999999999999998873 234 2468889999999999876
Q ss_pred -HHHHHHHHHHH
Q 005266 573 -AREILRSSLTL 583 (705)
Q Consensus 573 -A~~~~~~Al~L 583 (705)
+.+++++++++
T Consensus 253 aa~~~~~~~~~~ 264 (291)
T 3mkr_A 253 VTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 56777877655
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=2.3e-07 Score=105.25 Aligned_cols=132 Identities=10% Similarity=0.027 Sum_probs=88.5
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCC
Q 005266 429 EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKD 504 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~ 504 (705)
++..+.+++.+|.++...|++++|..+|++|+++.++. ..+..++|.++...|++++ +.+++++ .|+
T Consensus 19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~ 89 (568)
T 2vsy_A 19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---PEAVARLGRVRWTQQRHAEAAVLLQQASDA------APE 89 (568)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCC
Confidence 33556777777777777777777777777777776553 2456677777777777665 4555552 233
Q ss_pred ccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC---CChHHHHHHHHHHH
Q 005266 505 TINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL---HDTVQAREILRSSL 581 (705)
Q Consensus 505 ~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l---g~~~qA~~~~~~Al 581 (705)
+ +.+++.+|.++...|++++|...+++++++. . .+ ..++..+|.++..+ |+.++|.+.+++++
T Consensus 90 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p--~~----~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 90 H-------PGIALWLGHALEDAGQAEAAAAAYTRAHQLL-P--EE----PYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--CC----HHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 2 4567777777777777777777777777763 1 22 24666777777777 77777777777776
Q ss_pred HH
Q 005266 582 TL 583 (705)
Q Consensus 582 ~L 583 (705)
.+
T Consensus 156 ~~ 157 (568)
T 2vsy_A 156 AQ 157 (568)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.68 E-value=6.2e-07 Score=88.13 Aligned_cols=176 Identities=11% Similarity=0.044 Sum_probs=124.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhH
Q 005266 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (705)
Q Consensus 346 ~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~ 425 (705)
..+..+..+...|++++|..+++++++. .|. ....| .... +.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~-------~~~~~-----~~~~-----------~~----- 47 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL----------NID-------RTEMY-----YWTN-----------VD----- 47 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CHH-------HHHHH-----HHHH-----------SC-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCC-------ChHHH-----HHhh-----------hc-----
Confidence 4456778888999999999999999885 111 01122 1000 00
Q ss_pred HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccc
Q 005266 426 EAQEACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQ 501 (705)
Q Consensus 426 ~a~~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~ 501 (705)
......+.+.+.+|.++...|++++|..+|.+|+++.++.. .+..++|.++...|++++ +.++++ .
T Consensus 48 -~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~------~ 117 (208)
T 3urz_A 48 -KNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV---DCLEACAEMQVCRGQEKDALRMYEKILQ------L 117 (208)
T ss_dssp -TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHH------H
T ss_pred -chhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH------c
Confidence 00113345667799999999999999999999999987643 568899999999999877 677777 2
Q ss_pred cCCccchhhhHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005266 502 MKDTINGVREEASLHFAYGLLLMRQQDFQ--EARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 579 (705)
Q Consensus 502 ~~~~~~g~~~qA~al~~lG~~~~~~g~~~--eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~ 579 (705)
.|++ +.+|+.+|.+++..|+.. ++...+.+++. -++ ...++..+|.++...|++++|..++++
T Consensus 118 ~P~~-------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~a~~~~g~~~~~~~~~~~A~~~~~~ 182 (208)
T 3urz_A 118 EADN-------LAANIFLGNYYYLTAEQEKKKLETDYKKLSS------PTK--MQYARYRDGLSKLFTTRYEKARNSLQK 182 (208)
T ss_dssp CTTC-------HHHHHHHHHHHHHHHHHHHHHHHHHHC---C------CCH--HHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCC-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC------CCc--hhHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3442 568999999998877543 34444444321 122 223567789999999999999999999
Q ss_pred HHHHH
Q 005266 580 SLTLA 584 (705)
Q Consensus 580 Al~LA 584 (705)
|+.+.
T Consensus 183 al~l~ 187 (208)
T 3urz_A 183 VILRF 187 (208)
T ss_dssp HTTTS
T ss_pred HHHhC
Confidence 99764
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.66 E-value=3.2e-07 Score=95.15 Aligned_cols=129 Identities=14% Similarity=0.029 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchh
Q 005266 434 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 434 ~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~ 509 (705)
.+++.+|.++...|++++|...|++++...++.. ....+.++.+...++.+. +.++++ ..|++
T Consensus 152 ~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~---~~~~~~~~~l~~~~~~~~a~~~l~~al~------~~P~~---- 218 (287)
T 3qou_A 152 EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR---YQGLVAQIELLXQAADTPEIQQLQQQVA------ENPED---- 218 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH---HHHHHHHHHHHHHHTSCHHHHHHHHHHH------HCTTC----
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH---HHHHHHHHHHHhhcccCccHHHHHHHHh------cCCcc----
Confidence 3445789999999999999999999988877532 345555665666555443 666666 34553
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
+.+++.+|.++...|++++|...|+++++.. ... ....+...||.++..+|+.++|...|++++..
T Consensus 219 ---~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~----~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 219 ---AALATQLALQLHQVGRNEEALELLFGHLRXD-LTA----ADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTG----GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-ccc----ccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 6689999999999999999999999999984 222 22357889999999999999999999999865
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.65 E-value=3.2e-07 Score=87.35 Aligned_cols=163 Identities=13% Similarity=-0.008 Sum_probs=113.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHH
Q 005266 436 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASL 515 (705)
Q Consensus 436 ~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~a 515 (705)
...+|..+...|++++|+..|++++++.++. ..+..++|.++...|++++....++.+-. ..| + +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p-~-------~~~ 75 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSR---GDVKLAKADCLLETKQFELAQELLATIPL--EYQ-D-------NSY 75 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS---HHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGC-C-------HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccC-C-------hHH
Confidence 4567889999999999999999999887664 24578889999988886654333332211 123 2 122
Q ss_pred HHHHHHH-HHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHH
Q 005266 516 HFAYGLL-LMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 594 (705)
Q Consensus 516 l~~lG~~-~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~ 594 (705)
+...|.+ ....++..+|...++++++.. -.| ..++..+|.++...|++++|.+.+++++.+.-... ..
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~---P~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~ 144 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAAN---PDN----FELACELAVQYNQVGRDEEALELLWNILKVNLGAQ----DG 144 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHS---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT----TT
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC----hH
Confidence 3333333 223345556889999998773 223 25788899999999999999999999886532222 23
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 595 WALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 595 ~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
.+...|+.++...|+.++|...|.....
T Consensus 145 ~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 145 EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 4556789999999999999998876543
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.65 E-value=3.7e-07 Score=82.94 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCC
Q 005266 429 EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKD 504 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~ 504 (705)
+|..+..+..+|..+...|++++|+.+|.+|+++.++. ..+..|+|.++...|++++ +.+|+++ .|+
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~ 79 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---AILYSNRAACLTKLMEFQRALDDCDTCIRL------DSK 79 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHHh------hhh
Confidence 56677888999999999999999999999999998764 3568899999999999877 6777773 233
Q ss_pred ccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 505 TINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 505 ~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
+ +.+|+.+|.++...|++++|+..+++++++.
T Consensus 80 ~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 80 F-------IKGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred h-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 2 5689999999999999999999999999983
No 112
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.63 E-value=4.6e-07 Score=84.98 Aligned_cols=117 Identities=15% Similarity=0.008 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~ 510 (705)
..+..++.+|..+...|++++|+.+|.+|+++.++.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------------------------- 44 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN-------------------------------------------- 44 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------------------------------------------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC--------------------------------------------
Confidence 456677889999999999999999999988864431
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 590 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~ 590 (705)
+.+|+.+|.+++..|++++|+.++++++++. . .+ ..++..+|.+|..+|++++|.+.++.++.+.....+
T Consensus 45 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p--~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~- 114 (164)
T 3sz7_A 45 --PIYLSNRAAAYSASGQHEKAAEDAELATVVD-P--KY----SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS- 114 (164)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC-
T ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH-
Confidence 3478889999999999999999999999884 2 23 458889999999999999999999999988755554
Q ss_pred hhHHHHHHHHHHHH
Q 005266 591 PTQIWALSVLTALY 604 (705)
Q Consensus 591 ~~q~~al~~L~~l~ 604 (705)
.|....+..+.
T Consensus 115 ---~~~~~~l~~~~ 125 (164)
T 3sz7_A 115 ---DAMKRGLETTK 125 (164)
T ss_dssp ---HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHH
Confidence 44444444444
No 113
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.62 E-value=1.9e-07 Score=109.08 Aligned_cols=159 Identities=11% Similarity=0.021 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAA--------KITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGP 498 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al--------~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~ 498 (705)
..+.+.++.| ...|++++|+..|.+|+ +..++. +.+..++|.++...|++++ +.++++
T Consensus 392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~---- 461 (681)
T 2pzi_A 392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSES---VELPLMEVRALLDLGDVAKATRKLDDLAE---- 461 (681)
T ss_dssp TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHH----
T ss_pred CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccc---hhHHHHHHHHHHhcCCHHHHHHHHHHHhc----
Confidence 3444556666 88999999999999999 554442 2457888999999999877 566666
Q ss_pred ccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Q 005266 499 VYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILR 578 (705)
Q Consensus 499 ~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~ 578 (705)
..|++ +.+|+.+|.++...|++++|...|++|+++. - ++ ..++..+|.++..+|++++ .+.|+
T Consensus 462 --~~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P--~~----~~~~~~lg~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 462 --RVGWR-------WRLVWYRAVAELLTGDYDSATKHFTEVLDTF-P--GE----LAPKLALAATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp --HHCCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-T--TC----SHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred --cCcch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--CC----hHHHHHHHHHHHHcCChHH-HHHHH
Confidence 23442 6689999999999999999999999999994 2 23 3578899999999999999 99999
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 579 SSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 579 ~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
+|+.+. +....++..||.+|...|++++|.+.++.+.+
T Consensus 525 ~al~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 525 TVWSTN------DGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHhC------CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 998762 22345678899999999999999998887654
No 114
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.61 E-value=5.5e-07 Score=95.79 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=103.5
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChh------------HHHHHHHHHHHHHHhhCChhh----HHHH
Q 005266 429 EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS------------MQAMCHAYAAVSYFCIGDAES----SSQA 492 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~------------g~a~a~~nlalv~l~~gd~d~----~~~A 492 (705)
++..+.+++.+|..+...|++++|..+|.+|+++.++.. ..+.+..|+|.++...|++++ +.+|
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 446788899999999999999999999999999977642 235678888888888888766 6666
Q ss_pred HHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHH
Q 005266 493 IDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQ 572 (705)
Q Consensus 493 Leli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~q 572 (705)
+++ .|++ +.+|+.+|.++...|++++|+..+++++++. -.|. .++..+|.++..+|+.++
T Consensus 223 l~~------~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~----~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 223 LEL------DSNN-------EKGLSRRGEAHLAVNDFELARADFQKVLQLY---PNNK----AAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHH------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCH----HHHHHHHHHHHHHHHHHH
T ss_pred HHh------CCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCH----HHHHHHHHHHHHHHHHHH
Confidence 663 2331 4578888888888888888888888888873 2332 467788888888888888
Q ss_pred H-HHHHHHHHHHHH
Q 005266 573 A-REILRSSLTLAK 585 (705)
Q Consensus 573 A-~~~~~~Al~LAr 585 (705)
| .++|+..+....
T Consensus 283 a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 283 REKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 7 456666654433
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.60 E-value=5.6e-07 Score=85.67 Aligned_cols=131 Identities=10% Similarity=-0.011 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH-hh-CCh---hhHHHHHHhhccccccCCc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF-CI-GDA---ESSSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l-~~-gd~---d~~~~ALeli~~~~~~~~~ 505 (705)
..+.+++.+|.++...|++++|+.+|+++++..++ . .. ....+.+.. .. ++. ..+.++++ ..|++
T Consensus 38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~-~~--~~~~~~~~~~~~~~~~~a~~~~~~al~------~~P~~ 107 (176)
T 2r5s_A 38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQD-N-SY--KSLIAKLELHQQAAESPELKRLEQELA------ANPDN 107 (176)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC-H-HH--HHHHHHHHHHHHHTSCHHHHHHHHHHH------HSTTC
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCC-h-HH--HHHHHHHHHHhhcccchHHHHHHHHHH------hCCCC
Confidence 34455668899999999999999999999888772 2 11 111222222 22 221 11667766 34543
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
+.+++.+|.++...|++++|...++++++.. .... ...++..||.++..+|+.++|...|++++..
T Consensus 108 -------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~----~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 108 -------FELACELAVQYNQVGRDEEALELLWNILKVN-LGAQ----DGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTTT----TTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccC----hHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 5689999999999999999999999998773 2111 2347889999999999999999999998753
No 116
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.57 E-value=7.2e-07 Score=85.47 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------hh--HHHHHHHHHHHHHHhhCChhh----HHHHHHhhc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-------KS--MQAMCHAYAAVSYFCIGDAES----SSQAIDLIG 497 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~-------~~--g~a~a~~nlalv~l~~gd~d~----~~~ALeli~ 497 (705)
..+..+...|..+...|+|++|+..|.+|+++.++ .. ..+.+..|.|.++...|++++ +++||++|.
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 34566778999999999999999999999999887 22 246699999999999999988 899999744
Q ss_pred cccc-cCCccchhhhHHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 498 PVYQ-MKDTINGVREEASLH----FAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 498 ~~~~-~~~~~~g~~~qA~al----~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
..+. .|+ .+.+| |+.|.++...|++++|+..|++|+++.
T Consensus 89 ~~~e~~pd-------~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 89 RRGELNQD-------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHCCTTST-------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccccCCCc-------hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3322 244 25577 999999999999999999999999996
No 117
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.57 E-value=1.4e-06 Score=76.33 Aligned_cols=124 Identities=14% Similarity=0.140 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhh
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
.+..++.+|..+...|++++|..+|.++++..++.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------------------------------- 37 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN--------------------------------------------- 37 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------------------------------------------
Confidence 45667889999999999999999999988764321
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
+.+++.+|.++...|++++|..++.+++++......+......++..+|.++...|++++|.+.++.++.+. ++
T Consensus 38 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~-- 111 (131)
T 1elr_A 38 -MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH---RT-- 111 (131)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CC--
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC--
Confidence 346888899999999999999999999999743345555568899999999999999999999999999863 23
Q ss_pred hHHHHHHHHHHHHHHcC
Q 005266 592 TQIWALSVLTALYQQLG 608 (705)
Q Consensus 592 ~q~~al~~L~~l~~~~G 608 (705)
......++.+....+
T Consensus 112 --~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 112 --PDVLKKCQQAEKILK 126 (131)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHH
Confidence 233344555555443
No 118
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.56 E-value=1.6e-06 Score=97.61 Aligned_cols=143 Identities=9% Similarity=-0.104 Sum_probs=116.6
Q ss_pred HHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-C
Q 005266 475 YAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG-N 549 (705)
Q Consensus 475 nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g-n 549 (705)
+.+..+..+|++++ +.++|++...+ ..+++ .. .+..+.++|.++..+|+|++|..+++++|.+..+..| +
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~-lg~~H-p~---~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPV-FADTN-LY---VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTT-BCTTS-HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHh-cCCCC-HH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 33444556788877 78999987765 21222 22 3789999999999999999999999999999855433 4
Q ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc--CChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 550 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL--YDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 550 ~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~--gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
+..++.+++.||.+|..+|++++|+.+|++|+++..+. .|.+........|+..+..+|...+|...|.++.+
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999986 45667788889999999999999888888877643
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.54 E-value=9.9e-07 Score=85.36 Aligned_cols=137 Identities=13% Similarity=0.028 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Q 005266 469 QAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 548 (705)
Q Consensus 469 ~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g 548 (705)
.+....++|.++...|+++. |++.+.... .| .+.+++.+|.++...|++++|..++.+++++. . .
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~---A~~~~~~a~-~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--~ 69 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKG---ALDAFSAVQ-DP--------HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-K--H 69 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHH---HHHHHHTSS-SC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--T
T ss_pred HHHHHHHHHHHHHHhCCHHH---HHHHHHHHc-CC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c--c
Confidence 45567788999988888655 333333331 11 15689999999999999999999999999884 1 2
Q ss_pred CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcC----------ChhhHHHHHHHHHHHHHHcCCchHHHHHHH
Q 005266 549 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY----------DIPTQIWALSVLTALYQQLGDRGNEMENDE 618 (705)
Q Consensus 549 n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~g----------D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~ 618 (705)
+ ..++..+|.+|...|++++|.+.+++++.+..+.. ..+....++..+|.+|...|++++|.+.++
T Consensus 70 ~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 70 L----AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred c----hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 2 35889999999999999999999999998876555 444556788899999999999999999888
Q ss_pred HHHHHH
Q 005266 619 YRRKKL 624 (705)
Q Consensus 619 ~~~~~~ 624 (705)
...+..
T Consensus 146 ~al~~~ 151 (213)
T 1hh8_A 146 LATSMK 151 (213)
T ss_dssp HHHTTC
T ss_pred HHHHcC
Confidence 777653
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.52 E-value=1.1e-06 Score=99.68 Aligned_cols=97 Identities=11% Similarity=0.030 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
..+.+++.+|.++...|++++|..+|++|+++.++. ..+..++|.++...|++++ +.+++++ .|++
T Consensus 55 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~- 124 (568)
T 2vsy_A 55 GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQL------LPEE- 124 (568)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-
Confidence 457777888888888888888888888888876653 3457777888888888766 4555552 2332
Q ss_pred chhhhHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQ---QDFQEARNRLAKGLQIA 543 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~---g~~~eA~~~L~eAL~la 543 (705)
..+++.+|.++... |++++|...++++++..
T Consensus 125 ------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 125 ------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp ------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 45777888888888 88888888888887774
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.49 E-value=3.5e-06 Score=88.08 Aligned_cols=165 Identities=8% Similarity=-0.039 Sum_probs=119.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCC------h-hH-----------HHHHHHHHHHHHHhhCChhhHHHHHHhhccccc
Q 005266 440 GQYAHSVGCYSEAAFHYVEAAKITES------K-SM-----------QAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQ 501 (705)
Q Consensus 440 G~~~~~~g~~~eA~~~f~~Al~l~~~------~-~g-----------~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~ 501 (705)
|.++.+.+++.++..++++++.+.+. . .| ...+.+..+.++...|++++..+.++.... .
T Consensus 54 ~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--~ 131 (282)
T 4f3v_A 54 RVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--A 131 (282)
T ss_dssp HHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--T
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 44555556677888888888886544 1 12 345566667778778886554444432222 1
Q ss_pred cCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005266 502 MKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSL 581 (705)
Q Consensus 502 ~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al 581 (705)
.|+ .. ++|+.|.+++..+++++|+.+|+++.+ ..++.....+...||.++-.+|+.++|.+.|+++.
T Consensus 132 ~p~-------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~-----~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 132 GSE-------HL-VAWMKAVVYGAAERWTDVIDQVKSAGK-----WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp TCH-------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGG-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCc-------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhc-----cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 233 35 889999999999999999999986632 33545567799999999999999999999999987
Q ss_pred HHHHHcCCh-hh-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 582 TLAKKLYDI-PT-QIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 582 ~LArk~gD~-~~-q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
. +.. +. ...+...+|.+++..|+.++|.+.++......
T Consensus 199 ~-----g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 199 D-----SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp T-----STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred c-----CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2 332 22 55677888999999999999999777666543
No 122
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=4.8e-06 Score=72.58 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchh
Q 005266 430 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 430 ~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~ 509 (705)
+..+..+..+|..+...|++++|...|.+++...++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------------- 45 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------------------------------------------- 45 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------------------------------------------
Confidence 3556777889999999999999999999988764331
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
+.+++.+|.++...|++++|...+.++++.. ..+ ..++..+|.++...|++++|.+.++.++.+.. +
T Consensus 46 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p---~ 112 (131)
T 2vyi_A 46 ---AVYFCNRAAAYSKLGNYAGAVQDCERAICID---PAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDP---D 112 (131)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---T
T ss_pred ---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---ccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc---c
Confidence 2356677777777788888888888777763 112 34667778888888888888888877776622 1
Q ss_pred hhhHHHHHHHHHHHHHHcCCc
Q 005266 590 IPTQIWALSVLTALYQQLGDR 610 (705)
Q Consensus 590 ~~~q~~al~~L~~l~~~~Gd~ 610 (705)
...+...++.++...|+.
T Consensus 113 ---~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 113 ---NETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---CHHHHHHHHHHHHHHTTC
T ss_pred ---chHHHHHHHHHHHHHhcC
Confidence 133455677777777764
No 123
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.46 E-value=1.3e-05 Score=83.39 Aligned_cols=172 Identities=13% Similarity=0.113 Sum_probs=123.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCC
Q 005266 429 EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKD 504 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~ 504 (705)
.|..+.++..+|.++...|++++|...|++|+++.++... .+..+.+.++.+.|++++ +.+|++ ..|.
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~------~~p~ 166 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKARE------DART 166 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHT------STTC
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHh------cCCC
Confidence 4456778899999999999999999999999998765431 256777888877888766 455544 1232
Q ss_pred ccchhhhHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 505 TINGVREEASLHFAYGLLLMR-QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 505 ~~~g~~~qA~al~~lG~~~~~-~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
+ ..+|...|..... .|++++|+..+++|++.. . .+ ..++..+|.++...|+.++|+..|++|+..
T Consensus 167 ~-------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p--~~----~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 167 R-------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-G--DI----PEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp C-------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-T--TC----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred C-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--Cc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1 2345444443322 699999999999999985 2 23 357788999999999999999999999864
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 584 AKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 584 Ark~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
..--++....+| ..++.++...|+.++|...+..+.+..
T Consensus 233 ~~l~p~~~~~l~--~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 233 GSLPPEKSGEIW--ARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp SSSCGGGCHHHH--HHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 110111223344 446678888999999988776666544
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.46 E-value=4.5e-06 Score=82.32 Aligned_cols=173 Identities=13% Similarity=0.002 Sum_probs=126.5
Q ss_pred ccccccchh--hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHH
Q 005266 333 DGEWLPKSA--VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQF 410 (705)
Q Consensus 333 ~~~WLpk~~--~~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~ 410 (705)
++.|+.+.. ..+-+++..+.++...|++++|.++++++.+.
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------------------------------------- 47 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------------------------------------- 47 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------------------------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------------------------------------
Confidence 678888777 55777888888888889999999888888663
Q ss_pred HhHHHHHhhhhhhhHHhhhhhHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh----
Q 005266 411 LENKVAVELTRSGFVEAQEACESMIEMLRGQYAHSVG----CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC---- 482 (705)
Q Consensus 411 Le~~~~~~L~~~~~~~a~~~~~a~~~~llG~~~~~~g----~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~---- 482 (705)
..+.+.+.+|.++.. | ++++|..+|++|++. +...+..++|.+|..
T Consensus 48 --------------------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-----g~~~a~~~Lg~~y~~g~g~ 101 (212)
T 3rjv_A 48 --------------------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-----GSKSGEIVLARVLVNRQAG 101 (212)
T ss_dssp --------------------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHTCGGGS
T ss_pred --------------------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCC
Confidence 111222356777776 6 899999999999764 334568899999986
Q ss_pred hCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Q 005266 483 IGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLT 558 (705)
Q Consensus 483 ~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~----~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~ 558 (705)
.+| ..+|++.++..... ++..+ .+.+++.+|.++.. .+++++|..++++|... .+++ .+..
T Consensus 102 ~~d---~~~A~~~~~~A~~~-~~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~----~a~~ 166 (212)
T 3rjv_A 102 ATD---VAHAITLLQDAARD-SESDA---AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL----SRTG----YAEY 166 (212)
T ss_dssp SCC---HHHHHHHHHHHTSS-TTSHH---HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT----SCTT----HHHH
T ss_pred ccC---HHHHHHHHHHHHHc-CCCcc---hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----CCCH----HHHH
Confidence 334 55555555554321 11001 15689999999999 88999999999999654 1343 2688
Q ss_pred HHHHHHHHC-C-----ChHHHHHHHHHHHHH
Q 005266 559 ILGNLALAL-H-----DTVQAREILRSSLTL 583 (705)
Q Consensus 559 ~LG~i~~~l-g-----~~~qA~~~~~~Al~L 583 (705)
.||.+|... | +.++|..+|+.|...
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 999999875 3 899999999998865
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=5.1e-06 Score=76.14 Aligned_cols=99 Identities=10% Similarity=0.002 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCC
Q 005266 429 EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKD 504 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~ 504 (705)
.+..+..++.+|..+...|++++|..+|.+++.+.++.. .+..++|.++...|++++ +.+++++ .|+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~ 84 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA---RYFLGLGACRQSLGLYEQALQSYSYGALM------DIN 84 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCC
Confidence 445667788999999999999999999999999987643 457788999999999877 6666662 233
Q ss_pred ccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 505 TINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 505 ~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
+ ..+++.+|.++...|++++|+..+++++++.
T Consensus 85 ~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 85 E-------PRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp C-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 4579999999999999999999999999996
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.44 E-value=2.5e-06 Score=77.35 Aligned_cols=114 Identities=7% Similarity=-0.067 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccc
Q 005266 43 EVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122 (705)
Q Consensus 43 EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~ 122 (705)
-|.+....|..+| ..+++++|..+|++|+.+.+..+ .+++.++.+|.++|.+..|...+++++++.+
T Consensus 12 ~a~~~~~~G~~~~-~~g~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----- 78 (126)
T 4gco_A 12 LAQEEKNKGNEYF-KKGDYPTAMRHYNEAVKRDPENA-------ILYSNRAACLTKLMEFQRALDDCDTCIRLDS----- 78 (126)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-----
Confidence 3666677787776 47899999999999999988877 8899999999999999999999999999987
Q ss_pred cccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 005266 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILH 178 (705)
Q Consensus 123 ~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~ 178 (705)
.+.. .++.+|.++...|++..|++.|+++..+ ++...++...|..++
T Consensus 79 --~~~~---a~~~lg~~~~~~~~~~~A~~~~~~al~l----~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 79 --KFIK---GYIRKAACLVAMREWSKAQRAYEDALQV----DPSNEEAREGVRNCL 125 (126)
T ss_dssp --TCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHC
T ss_pred --hhhH---HHHHHHHHHHHCCCHHHHHHHHHHHHHH----CcCCHHHHHHHHHhc
Confidence 3333 4567899999999999999999999887 777788777776653
No 127
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.44 E-value=3.9e-06 Score=78.23 Aligned_cols=99 Identities=11% Similarity=0.041 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCC
Q 005266 429 EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKD 504 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~ 504 (705)
.+..+..++.+|..+...|++++|+.+|.+++.+.++.. .+..++|.++...|++++ +.+++++ .|+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~ 87 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS---RFFLGLGACRQAMGQYDLAIHSYSYGAVM------DIX 87 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STT
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCC
Confidence 456677888999999999999999999999999987643 446788999999999877 6676662 344
Q ss_pred ccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 505 TINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 505 ~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
+ +.+++.+|.++...|++++|+..+++++++.
T Consensus 88 ~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 88 E-------PRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp C-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2 4589999999999999999999999999996
No 128
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.43 E-value=3e-06 Score=75.88 Aligned_cols=103 Identities=19% Similarity=0.132 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhh
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
.+..+..+|..+...|++++|..+|.+++++.++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--------------------------------------------- 42 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--------------------------------------------- 42 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------------------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---------------------------------------------
Confidence 46677889999999999999999999988864431
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 587 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~ 587 (705)
+.+|+.+|.+++..|++++|...+++++++. . .+ ..++..+|.++...|++++|.+.++.++.+....
T Consensus 43 -~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 43 -AVYYTNRALCYLKMQQPEQALADCRRALELD-G--QS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c--hh----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 3478888888889999999999999998874 1 22 3478889999999999999999999999888773
No 129
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.41 E-value=5.5e-06 Score=79.32 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc------cCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM------GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~------gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LAr 585 (705)
+|..++..|..++..|+|++|...+++|+++. ... ......+.++..+|.++..+|++++|..+|+.|+.+..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 58899999999999999999999999999996 331 11124456999999999999999999999999999865
Q ss_pred HcCChh-hHHHHH----HHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 586 KLYDIP-TQIWAL----SVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 586 k~gD~~-~q~~al----~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
+.+... .-..++ ..+|.++..+|++++|.+.|..+.++.-
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 554332 234444 8899999999999999999999988754
No 130
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.41 E-value=8.6e-06 Score=84.70 Aligned_cols=166 Identities=14% Similarity=0.002 Sum_probs=123.3
Q ss_pred hhhhHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHhhCChhh----
Q 005266 428 QEACESMIEMLRGQYAHS-------VGCY-------SEAAFHYVEAAK-ITESKSMQAMCHAYAAVSYFCIGDAES---- 488 (705)
Q Consensus 428 ~~~~~a~~~~llG~~~~~-------~g~~-------~eA~~~f~~Al~-l~~~~~g~a~a~~nlalv~l~~gd~d~---- 488 (705)
..|..+.+.+.+|.++.. .|++ ++|...|++|++ +.++.. .+..+.+.++...|+++.
T Consensus 45 ~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~ 121 (308)
T 2ond_A 45 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM---LLYFAYADYEESRMKYEKVHSI 121 (308)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH---HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHhcCCHHHHHHH
Confidence 345677888888888764 5886 999999999999 666532 346677888888898766
Q ss_pred HHHHHHhhccccccCCccchhhhHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH-H
Q 005266 489 SSQAIDLIGPVYQMKDTINGVREEAS-LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL-A 566 (705)
Q Consensus 489 ~~~ALeli~~~~~~~~~~~g~~~qA~-al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~-~ 566 (705)
++++++ ..|++ +. +|..+|..+..+|++++|+..+++|++.. . .+ ..++...+.+.. .
T Consensus 122 ~~~al~------~~p~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p--~~----~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 122 YNRLLA------IEDID-------PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R--TR----HHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHT------SSSSC-------THHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-T--CC----THHHHHHHHHHHHT
T ss_pred HHHHHh------ccccC-------ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C--CC----HHHHHHHHHHHHHH
Confidence 566665 22332 22 79999999999999999999999998774 2 12 223334444433 3
Q ss_pred CCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 567 LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 567 lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
.|++++|.+.|+.|+.+.- + ...+...++.++...|++++|...++.+..
T Consensus 182 ~~~~~~A~~~~~~al~~~p---~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYG---D---IPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC---C---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7999999999999998742 2 234447788999999999999999987766
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=4.2e-06 Score=73.68 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
..+..++.+|..+...|++++|...|.++++..++. ..+..++|.++...|++++ +.+++++ .|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~-- 82 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQL------EPT-- 82 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH------CTT--
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCC--
Confidence 345666789999999999999999999999987654 4568889999999999877 5666652 233
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCC
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD 569 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~ 569 (705)
.+.+++.+|.++...|++++|..++.+++++. . .+ ..++..+|.++...|+
T Consensus 83 -----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p--~~----~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 -----FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-S--SC----KEAADGYQRCMMAQYN 133 (133)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-G--GG----THHHHHHHHHHHHHTC
T ss_pred -----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-C--Cc----hHHHHHHHHHHHHhcC
Confidence 25689999999999999999999999999884 2 12 2467788888877663
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.40 E-value=8.6e-06 Score=74.75 Aligned_cols=141 Identities=9% Similarity=-0.024 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccc
Q 005266 41 IIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSAS 120 (705)
Q Consensus 41 ~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~ 120 (705)
...+.....+|.+++ ..++++.|...+++++.+.+..+ .+++.++.+|...|.+..|...+.++++..+
T Consensus 10 ~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--- 78 (166)
T 1a17_A 10 LKRAEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNA-------IYYGNRSLAYLRTECYGYALGDATRAIELDK--- 78 (166)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---
Confidence 455667777777766 47899999999999988776655 7888899999999999999999999999876
Q ss_pred cccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHH
Q 005266 121 QDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRV 200 (705)
Q Consensus 121 ~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~ 200 (705)
.+.+ .++.+|.++...|++..|++.++++..+ ++....+.+.+..+...+.. .+++++...+.+...+
T Consensus 79 ----~~~~---~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 79 ----KYIK---GYYRRAASNMALGKFRAALRDYETVVKV----KPHDKDAKMKYQECNKIVKQ-KAFERAIAGDEHKRSV 146 (166)
T ss_dssp ----TCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred ----ccHH---HHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHH-HHHHHHHHcccchHHH
Confidence 3333 5667899999999999999999998876 55555555444554333322 6777777777777777
Q ss_pred hhhc
Q 005266 201 WESI 204 (705)
Q Consensus 201 ~~~~ 204 (705)
.+.+
T Consensus 147 ~~~~ 150 (166)
T 1a17_A 147 VDSL 150 (166)
T ss_dssp HHHC
T ss_pred hccc
Confidence 6543
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.38 E-value=3e-06 Score=81.85 Aligned_cols=36 Identities=17% Similarity=0.018 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 005266 430 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 465 (705)
Q Consensus 430 ~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~ 465 (705)
+..+..+..+|..+...|++++|...|.+|+++.++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 70 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH 70 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 356777889999999999999999999999998665
No 134
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.36 E-value=3.5e-06 Score=78.72 Aligned_cols=99 Identities=18% Similarity=0.120 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------------hhHHHHHHHHHHHHHHhhCChhh----HHHH
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---------------KSMQAMCHAYAAVSYFCIGDAES----SSQA 492 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~---------------~~g~a~a~~nlalv~l~~gd~d~----~~~A 492 (705)
.+..+...|..+...|++++|+.+|.+|+.+.+. ......+..|+|.+|...|+++. +.+|
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4566778999999999999999999999998321 23445789999999999999877 7777
Q ss_pred HHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 493 IDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 493 Leli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
+++ .|++ +.+|+.+|.++...|++++|+..+.+++++.
T Consensus 90 l~~------~p~~-------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 90 LKR------EETN-------EKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHH------STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred Hhc------CCcc-------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 773 2332 5689999999999999999999999999994
No 135
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.36 E-value=8.3e-06 Score=71.21 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc-CCh
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL-YDI 590 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~-gD~ 590 (705)
.+..++.+|..++..|++++|..++.++++.. . .+ ..++..+|.++...|++++|...++.++.+.... ++.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~--~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-P--TN----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C--cc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence 46789999999999999999999999999884 2 22 3578899999999999999999999999998875 444
Q ss_pred hhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 591 PTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 591 ~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
.....++..+|.+|...|++++|.+.++...+.
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 445778889999999999999999988877664
No 136
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.36 E-value=1.2e-05 Score=69.95 Aligned_cols=126 Identities=14% Similarity=0.132 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccc
Q 005266 47 RLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVK 126 (705)
Q Consensus 47 rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~ 126 (705)
...+|.+++ ..+++++|...++++..+.+..+ .+++.++.+|...|.+..+...++++++..+ ..
T Consensus 4 ~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~ 68 (136)
T 2fo7_A 4 WYNLGNAYY-KQGDYDEAIEYYQKALELDPRSA-------EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------RS 68 (136)
T ss_dssp HHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TC
T ss_pred HHHHHHHHH-HcCcHHHHHHHHHHHHHcCCcch-------hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-------Cc
Confidence 344455444 35677778877777766544433 5566677777777777777777777777655 22
Q ss_pred hhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHh
Q 005266 127 LWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQC 197 (705)
Q Consensus 127 ~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~ 197 (705)
.+ .++.+|.++...|++..|+..++.+... ++....+++.++.++... .+++++...+.++
T Consensus 69 ~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 69 AE---AWYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQ---GDYDEAIEYYQKA 129 (136)
T ss_dssp HH---HHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTT---TCHHHHHHHHHHH
T ss_pred hH---HHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHH---ccHHHHHHHHHHH
Confidence 22 3455677777778888888877776665 455566667777766555 5666665555444
No 137
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.36 E-value=4.1e-06 Score=78.20 Aligned_cols=105 Identities=15% Similarity=0.004 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccC------------HHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN------------LQLVSQYLTILGNLALALHDTVQAREILRS 579 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn------------~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~ 579 (705)
.+..+...|..++..|+|++|...+++|+.+.. ...+ ....+.++..+|.+|..+|++++|...++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLD-TLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 477999999999999999999999999999953 2211 355667999999999999999999999999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 580 SLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 580 Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
|+.+- +.-..++..+|.+|...|++++|.+.++.+.+.
T Consensus 89 al~~~------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 89 VLKRE------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcC------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 99882 334677889999999999999999998887766
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.36 E-value=1.3e-06 Score=90.44 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccch
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTING 508 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g 508 (705)
+..++.+|..+...|++++|..+|.+|+++.++. ..+..|+|.++...|++++ +.+|++ ..|++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~------~~p~~--- 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALE------LDGQS--- 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTT------SCTTC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCCCC---
Confidence 5677889999999999999999999999998764 3568899999999999877 455444 23442
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 509 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 509 ~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
+.+++.+|.++...|++++|...+++++++.
T Consensus 72 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 72 ----VKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5689999999999999999999999999996
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.35 E-value=2.2e-06 Score=79.95 Aligned_cols=112 Identities=10% Similarity=-0.015 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhc
Q 005266 452 AAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ 527 (705)
Q Consensus 452 A~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g 527 (705)
+...|++++.+.++ ...+..++|.++...|++++ +.++++ ..|++ +.+|+.+|.++...|
T Consensus 6 ~~~~~~~al~~~p~---~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------~~p~~-------~~~~~~lg~~~~~~g 69 (148)
T 2vgx_A 6 GGGTIAMLNEISSD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCV------LDHYD-------SRFFLGLGACRQAMG 69 (148)
T ss_dssp CCCSHHHHTTCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTC-------HHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHcCCHh---hHHHHHHHHHHHHHcCChHHHHHHHHHHHH------cCccc-------HHHHHHHHHHHHHHh
Confidence 34456666666433 34457778888888888766 445444 22332 567888899999999
Q ss_pred CHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 005266 528 DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 586 (705)
Q Consensus 528 ~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk 586 (705)
++++|...+++++.+. . .++ .++..+|.+|..+|++++|.+.|+.++.+...
T Consensus 70 ~~~~A~~~~~~al~l~-p--~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 70 QYDLAIHSYSYGAVMD-I--XEP----RFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp CHHHHHHHHHHHHHHS-T--TCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhcC-C--CCc----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 9999999999988874 2 232 46778899999999999999999988887654
No 140
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.34 E-value=0.0024 Score=78.99 Aligned_cols=185 Identities=15% Similarity=0.024 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhh
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
.+..++-.|.++...|++++|..+|..|.+..++... ..++|..|...++++.++..+. . ++
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I----dt~LafaYAKl~rleele~fI~---~----~n------- 1194 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV----ETELIFALAKTNRLAELEEFIN---G----PN------- 1194 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc----cHHHHHHHHhhcCHHHHHHHHh---C----CC-------
Confidence 3445556899999999999999999999987655321 2247777777777665544432 1 11
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH---------
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT--------- 582 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~--------- 582 (705)
...++..|..++..|+|++|+.++..| ..+..+|..+..+|++++|.+.+++|..
T Consensus 1195 -~ad~~~iGd~le~eg~YeeA~~~Y~kA---------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1195 -NAHIQQVGDRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 1258 (1630)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHhh---------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHH
Confidence 235667999999999999999999975 2667788899999998888888877622
Q ss_pred ---------HHHHcCCh-hhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH-------HHHHHHHHHHHhh--cchhhHHH
Q 005266 583 ---------LAKKLYDI-PTQIWALSVLTALYQQLGDRGNEMENDEYRRK-------KLDELQKRLADAY--SSIHHIEL 643 (705)
Q Consensus 583 ---------LArk~gD~-~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~-------~~~~l~~~~~~a~--~~~~h~~l 643 (705)
+|+..|.. .....-+..+...|...|.+++|...++.... +++.|.--+.... ...+|..+
T Consensus 1259 acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred HHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 22222210 01122445677789999999999998887733 5555554444433 34455543
Q ss_pred Hhhhccch
Q 005266 644 ISKVKLEV 651 (705)
Q Consensus 644 ~~~~~~~~ 651 (705)
. |.|+.+
T Consensus 1339 f-~~rini 1345 (1630)
T 1xi4_A 1339 F-WSRVNI 1345 (1630)
T ss_pred H-HHhccc
Confidence 3 566664
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.33 E-value=1.4e-05 Score=69.00 Aligned_cols=117 Identities=24% Similarity=0.203 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhH
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 512 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~q 512 (705)
+.+++.+|..+...|++++|...|.++++..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------------------- 42 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------------------------------------- 42 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----------------------------------------------
Confidence 4566788888888999999999888887653321
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
..+++.+|.++...|++++|...++++++.. ..+ ..++..+|.++...|++++|.+.++.++.+. ++
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~--- 109 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PN--- 109 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT---
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---Ccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CC---
Confidence 2356667777777788888888888777663 122 2456677888888888888888887777552 22
Q ss_pred HHHHHHHHHHHHHHcC
Q 005266 593 QIWALSVLTALYQQLG 608 (705)
Q Consensus 593 q~~al~~L~~l~~~~G 608 (705)
...+...++.++...|
T Consensus 110 ~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 110 NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhcc
Confidence 2334455666665543
No 142
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.33 E-value=3.7e-06 Score=93.38 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChh------------HHHHHHHHHHHHHHhhCChhh----HHHH
Q 005266 429 EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS------------MQAMCHAYAAVSYFCIGDAES----SSQA 492 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~------------g~a~a~~nlalv~l~~gd~d~----~~~A 492 (705)
++..+..+..+|..+...|++++|..+|.+|+++.++.. ....+..|+|.+|...|++++ +.+|
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 445678889999999999999999999999999877642 346788999999999999877 6777
Q ss_pred HHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHH
Q 005266 493 IDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQ 572 (705)
Q Consensus 493 Leli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~q 572 (705)
+++ .|++ +.+|+.+|.++...|++++|+..|++|+++. . .| ..++..+|.++..+|+.++
T Consensus 344 l~~------~p~~-------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P--~~----~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 344 LGL------DSAN-------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-P--QN----KAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHH------STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHH
T ss_pred Hhc------CCcc-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C--CC----HHHHHHHHHHHHHHHHHHH
Confidence 773 2332 5689999999999999999999999998874 1 22 2478889999999998888
Q ss_pred HHH-HHHHHH
Q 005266 573 ARE-ILRSSL 581 (705)
Q Consensus 573 A~~-~~~~Al 581 (705)
|.+ .+...+
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 774 344333
No 143
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.31 E-value=1.5e-05 Score=70.47 Aligned_cols=99 Identities=12% Similarity=0.067 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhh
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~ 510 (705)
.++.+|..+...|++++|...|.++++..++......+..++|.++...|++++ +.++++ ..|++..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~------~~p~~~~--- 74 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS------RYPTHDK--- 74 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTSTT---
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH------HCCCCcc---
Confidence 457889999999999999999999999988876666788999999999999877 455555 2344321
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
.+.+++.+|.++...|++++|+..++++++..
T Consensus 75 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 75 -AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 24689999999999999999999999999874
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.29 E-value=1.4e-05 Score=71.05 Aligned_cols=118 Identities=11% Similarity=-0.013 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccc
Q 005266 43 EVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122 (705)
Q Consensus 43 EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~ 122 (705)
.|......|..++ ..+++++|...|++++.+.+..+ .+++.++.+|...|++..|...++++++..+
T Consensus 3 ~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----- 69 (126)
T 3upv_A 3 KAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDA-------RGYSNRAAALAKLMSFPEAIADCNKAIEKDP----- 69 (126)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred hHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----
Confidence 4566677777665 58899999999999999888876 8899999999999999999999999999887
Q ss_pred cccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc--CCchHHHHHHHHHHH
Q 005266 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEI--SYPDLQMFFATAILH 178 (705)
Q Consensus 123 ~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~--~~~~~~~~~~La~~~ 178 (705)
.+.. .++.+|.++...|++..|+..++++..+.... .+....+...+..+.
T Consensus 70 --~~~~---~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 70 --NFVR---AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp --TCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred --CcHH---HHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 3332 56778999999999999999999998874111 144555555555544
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=1.6e-06 Score=83.90 Aligned_cols=164 Identities=14% Similarity=0.076 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccc
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 507 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~ 507 (705)
.+..|...|......|++++|...|..... +....+....+.|.++...|+++. +.+++++.... ++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~ 76 (198)
T 2fbn_A 3 SSHHHHHHSSGRENLYFQGAKKSIYDYTDE---EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT---EEWDD 76 (198)
T ss_dssp -------------------CCCSGGGCCHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC---TTCCC
T ss_pred CcccccchhhhhhhhhhccccCchhhCCHH---HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---cccch
Confidence 345666778888888999988887765332 244566778899999999999877 66777643221 11001
Q ss_pred h------hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005266 508 G------VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSL 581 (705)
Q Consensus 508 g------~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al 581 (705)
+ ....+.+++.+|.++...|++++|+.++.+++++. -.+ ..++..+|.+|..+|++++|.+.++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 77 QILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID---KNN----VKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---ccc----HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 00013689999999999999999999999999984 223 3588999999999999999999999999
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHcCCchHHH
Q 005266 582 TLAKKLYDIPTQIWALSVLTALYQQLGDRGNEM 614 (705)
Q Consensus 582 ~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~ 614 (705)
.+. ++ ...+...++.++...|+..++.
T Consensus 150 ~~~---p~---~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 150 SLN---PN---NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHS---TT---CHHHHHHHHHHHHHHHHHHC--
T ss_pred HHC---CC---cHHHHHHHHHHHHHHHHHHHHH
Confidence 873 22 2455677888888888776655
No 146
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.26 E-value=9.7e-06 Score=89.85 Aligned_cols=105 Identities=14% Similarity=0.040 Sum_probs=87.3
Q ss_pred HcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHH
Q 005266 445 SVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLM 524 (705)
Q Consensus 445 ~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~ 524 (705)
..|+|++|+..|++|+.+....- |+ .+|. .+..+.++|.++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~l----------------g~---------------~Hp~-------~a~~~~nLa~~y~ 351 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVF----------------ED---------------SNVY-------MLHMMYQAMGVCL 351 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTB----------------CT---------------TSHH-------HHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCcc----------------Ch---------------hchH-------HHHHHHHHHHHHH
Confidence 46889999999999887744322 11 1121 3778999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc
Q 005266 525 RQQDFQEARNRLAKGLQIAHNHMG-NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 587 (705)
Q Consensus 525 ~~g~~~eA~~~L~eAL~la~~e~g-n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~ 587 (705)
.+|+|++|..+++++|.+..+..| ++.-++.+++.||.+|..+|++++|+.+|++|+++..+.
T Consensus 352 ~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 352 YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999865444 567889999999999999999999999999999999886
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=8.2e-06 Score=76.27 Aligned_cols=100 Identities=19% Similarity=0.078 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
.+..|+.+|.+++..|++++|..++++++++. . .+ ..++..+|.+|..+|++++|.+.++.++.+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------ 76 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-P--AN----PIYLSNRAAAYSASGQHEKAAEDAELATVVDP------ 76 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T--TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--cC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------
Confidence 47799999999999999999999999999984 2 23 46899999999999999999999999998732
Q ss_pred hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 592 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 592 ~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
....++..+|.+|...|++++|.+.++...+..
T Consensus 77 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 77 KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 235677889999999999999999988887664
No 148
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.25 E-value=8e-06 Score=77.06 Aligned_cols=132 Identities=12% Similarity=0.053 Sum_probs=98.2
Q ss_pred HHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhH
Q 005266 53 LLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNF 132 (705)
Q Consensus 53 iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f 132 (705)
+=.++++++..+...+.++-..++..-..+.--..+++.++.+|++.|.+..|...++++++..+ .+.+ +
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-------~~~~---~ 72 (151)
T 3gyz_A 3 LNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-------YNVD---Y 72 (151)
T ss_dssp ------CHHHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHH---H
T ss_pred CcHHHHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHH---H
Confidence 33455555655555543321111111112233457889999999999999999999999999988 4555 7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHh
Q 005266 133 NSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVW 201 (705)
Q Consensus 133 ~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~ 201 (705)
++.+|.++...|+|..|+..|++.+.+ ++....+++.++.++..+ .+++++...+.++..+-
T Consensus 73 ~~~lg~~~~~~g~~~~Ai~~~~~al~l----~P~~~~~~~~lg~~~~~l---g~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 73 IMGLAAIYQIKEQFQQAADLYAVAFAL----GKNDYTPVFHTGQCQLRL---KAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----SSSCCHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhC
Confidence 788999999999999999999998887 888899999999999988 88999999988886653
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.24 E-value=3e-05 Score=67.42 Aligned_cols=119 Identities=10% Similarity=-0.022 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccc
Q 005266 41 IIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSAS 120 (705)
Q Consensus 41 ~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~ 120 (705)
...+.+...+|.+++ ..+++++|...+++++.+.+..+ .+++.++.+|...|.+..|...+.++++..+
T Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--- 77 (131)
T 2vyi_A 9 SAEAERLKTEGNEQM-KVENFEAAVHFYGKAIELNPANA-------VYFCNRAAAYSKLGNYAGAVQDCERAICIDP--- 77 (131)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred hhhhHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHhhchHHHHHHHHHHHhcCc---
Confidence 446677788888776 57899999999999988766654 7888999999999999999999999999876
Q ss_pred cccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 005266 121 QDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHL 181 (705)
Q Consensus 121 ~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L 181 (705)
.+.+ .++.+|.++...|++..|+..++++... ++....+.+.++.++..+
T Consensus 78 ----~~~~---~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 78 ----AYSK---AYGRMGLALSSLNKHVEAVAYYKKALEL----DPDNETYKSNLKIAELKL 127 (131)
T ss_dssp ----TCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHH
T ss_pred ----cCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHH
Confidence 3333 5677899999999999999999998876 666677788888877665
No 150
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.22 E-value=1.6e-05 Score=87.89 Aligned_cols=126 Identities=10% Similarity=-0.068 Sum_probs=99.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHH
Q 005266 443 AHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLL 522 (705)
Q Consensus 443 ~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~ 522 (705)
+..+|++++|+..|++++.+....- |+ .+|. .+..+.++|.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~l----------------g~---------------~h~~-------~~~~~~~L~~~ 338 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERL----------------PD---------------INIY-------QLKVLDCAMDA 338 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCC----------------CT---------------TSHH-------HHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcC----------------Cc---------------cchH-------HHHHHHHHHHH
Confidence 3467889999999988887644321 11 1111 36789999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcc-cCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc--CChhhHHHHHHH
Q 005266 523 LMRQQDFQEARNRLAKGLQIAHNHM-GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL--YDIPTQIWALSV 599 (705)
Q Consensus 523 ~~~~g~~~eA~~~L~eAL~la~~e~-gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~--gD~~~q~~al~~ 599 (705)
+..+|+|++|..+++++|.+..+.. .++..++.+++.||.+|..+|++++|..++++|+++-.+. .|.+....+...
T Consensus 339 y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 418 (429)
T 3qwp_A 339 CINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILL 418 (429)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 9999999999999999999975432 4667889999999999999999999999999999999987 355566667777
Q ss_pred HHHHHHH
Q 005266 600 LTALYQQ 606 (705)
Q Consensus 600 L~~l~~~ 606 (705)
|+.++..
T Consensus 419 l~~~~~e 425 (429)
T 3qwp_A 419 LEECDAN 425 (429)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.21 E-value=7.2e-06 Score=77.32 Aligned_cols=121 Identities=17% Similarity=0.146 Sum_probs=81.6
Q ss_pred HHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHH
Q 005266 444 HSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAY 519 (705)
Q Consensus 444 ~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~l 519 (705)
...|++++|...|.++++..++.. .+..++|.++...|+++. +.+++++ .|++ +.+++.+
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~-------~~~~~~l 84 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNS---EQWALLGEYYLWQNDYSNSLLAYRQALQL------RGEN-------AELYAAL 84 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HCSC-------HHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-------HHHHHHH
Confidence 346677777777777777765432 346667777777777655 4444442 2221 4578888
Q ss_pred HHH-HHHhcCH--HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc
Q 005266 520 GLL-LMRQQDF--QEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 587 (705)
Q Consensus 520 G~~-~~~~g~~--~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~ 587 (705)
|.+ +...|++ ++|...+.++++.. -.+ ..++..+|.+|...|++++|.+.++.++.+....
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALALD---SNE----ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhC---CCc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 888 7788888 99999999888873 223 2467788999999999999999998888765443
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=1.8e-05 Score=71.03 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCcc
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 506 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~ 506 (705)
..+..++.+|..+...|++++|...|.+++++.++......+..++|.++...|++++ +.+++++ .|++
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~- 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------DGGD- 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------TSCC-
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------CccC-
Confidence 4456677899999999999999999999999988776667889999999999999877 5555552 2332
Q ss_pred chhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 507 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 507 ~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
+.+++.+|.++...|++++|..++++++++.
T Consensus 99 ------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 99 ------VKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 5689999999999999999999999999884
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.20 E-value=3e-05 Score=66.84 Aligned_cols=120 Identities=15% Similarity=0.096 Sum_probs=93.4
Q ss_pred ChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccc
Q 005266 39 LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSS 118 (705)
Q Consensus 39 ~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~ 118 (705)
.|...+.+...+|.+++ ..+++++|..++++++.+.+..+ .+++.++.+|...|.+..|...++++++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNA-------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp ---CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 45555677778887655 47899999999999988765544 67888999999999999999999999987762
Q ss_pred cccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 005266 119 ASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVH 180 (705)
Q Consensus 119 ~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~ 180 (705)
+.. .++.+|.++...|++..|...++++... ++....+.+.++.++..
T Consensus 76 -------~~~---~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 76 -------NAE---AWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp -------CHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH
T ss_pred -------cHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHh
Confidence 232 4567899999999999999999998876 66667777777776543
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.17 E-value=1.1e-05 Score=72.42 Aligned_cols=92 Identities=12% Similarity=0.019 Sum_probs=76.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhh
Q 005266 436 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 436 ~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
.+.+|..+...|++++|...|++|+++.++.. .+..++|.++...|++++ +.+|++ ..|++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~------l~P~~------ 84 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPERE---EAWRSLGLTQAENEKDGLAIIALNHARM------LDPKD------ 84 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTC------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCC------
Confidence 45789999999999999999999999987643 457889999999999877 666666 23442
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
..+++.+|.++...|++++|+..+++++++.
T Consensus 85 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 85 -IAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5689999999999999999999999998774
No 155
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.15 E-value=2e-05 Score=69.18 Aligned_cols=120 Identities=9% Similarity=-0.062 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhcccc
Q 005266 40 PIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSA 119 (705)
Q Consensus 40 p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~ 119 (705)
+..-+.+...+|.+++ ..+++++|...+++++.+.+..+ .+++.++.+|...|++..|...++++++..+
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-- 81 (133)
T 2lni_A 12 NPDLALMVKNKGNECF-QKGDYPQAMKHYTEAIKRNPKDA-------KLYSNRAACYTKLLEFQLALKDCEECIQLEP-- 81 (133)
T ss_dssp SSCHHHHHHHHHHHHH-HTTCSHHHHHHHHHHHTTCTTCH-------HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--
T ss_pred CcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--
Confidence 3445566677777664 68899999999999887665544 7788899999999999999999999999876
Q ss_pred ccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 005266 120 SQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHL 181 (705)
Q Consensus 120 ~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L 181 (705)
...+ .++.+|.++...|++..|+..++++... ++....+.+.++.++..+
T Consensus 82 -----~~~~---~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 82 -----TFIK---GYTRKAAALEAMKDYTKAMDVYQKALDL----DSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp -----TCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CGGGTHHHHHHHHHHHHH
T ss_pred -----CchH---HHHHHHHHHHHHhhHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHh
Confidence 3333 5677899999999999999999998876 666677777777776543
No 156
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.15 E-value=1.6e-05 Score=70.26 Aligned_cols=102 Identities=11% Similarity=0.030 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 594 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~ 594 (705)
+++..|..++..|++++|...+.++++.. -.+ .....++..+|.++...|++++|.+.++.++... ++.....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~ 76 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY---PNG-VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKAA 76 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCcccH
Confidence 57888999999999999999999998874 223 4556789999999999999999999999998764 3333346
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 595 WALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 595 ~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
.++..+|.+|...|++++|.+.++...+.
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67788999999999999999988766554
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.14 E-value=3.8e-05 Score=65.56 Aligned_cols=112 Identities=15% Similarity=-0.002 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhcccccccc
Q 005266 44 VKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDV 123 (705)
Q Consensus 44 A~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~ 123 (705)
+.....+|.+++ ..+++++|..++++++.+.+..+ .+++.++.+|...|++..|...++++++..+
T Consensus 4 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------ 69 (118)
T 1elw_A 4 VNELKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNH-------VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP------ 69 (118)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcH-------HHHHHHHHHHHhhccHHHHHHHHHHHHHhCc------
Confidence 455666776665 57899999999999888766655 6788899999999999999999999998776
Q ss_pred ccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 005266 124 AVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAIL 177 (705)
Q Consensus 124 ~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~ 177 (705)
.+.. .++.+|.++...|++..|...++++... ++....+.+.++.+
T Consensus 70 -~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 70 -DWGK---GYSRKAAALEFLNRFEEAKRTYEEGLKH----EANNPQLKEGLQNM 115 (118)
T ss_dssp -TCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHTT----CTTCHHHHHHHHHH
T ss_pred -ccHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHc----CCCCHHHHHHHHHh
Confidence 2222 5567888999999999999999887765 55556666555553
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.14 E-value=2.6e-05 Score=69.58 Aligned_cols=101 Identities=17% Similarity=0.064 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
+..++.+|.+++..|++++|...+.+++.+. . .+ ..++..+|.++..+|++++|.+.++.++.+.. +
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~--- 75 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-P--LV----AVYYTNRALCYLKMQQPEQALADCRRALELDG---Q--- 75 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T---
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-c--Cc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---h---
Confidence 6789999999999999999999999999984 2 23 35899999999999999999999999998732 2
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 593 QIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
...++..+|.+|...|++++|.+.+....+...+
T Consensus 76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 3556778999999999999999999988877643
No 159
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.13 E-value=1.8e-05 Score=87.73 Aligned_cols=102 Identities=9% Similarity=-0.073 Sum_probs=91.2
Q ss_pred HhcCHHHHHHHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc--CChhhHHHHHHHHH
Q 005266 525 RQQDFQEARNRLAKGLQIAHNHMG-NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL--YDIPTQIWALSVLT 601 (705)
Q Consensus 525 ~~g~~~eA~~~L~eAL~la~~e~g-n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~--gD~~~q~~al~~L~ 601 (705)
..|+|++|...++++|.+..+..| +...++.+++.||.+|..+|++++|+.++++++++.++. .+.+..+.+++.||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 468999999999999999754444 335688899999999999999999999999999999986 45778999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 602 ALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 602 ~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
.+|...|++++|...++.+.++.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 160
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.12 E-value=1.9e-05 Score=68.22 Aligned_cols=87 Identities=14% Similarity=0.054 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
+.+++.+|.+++..|++++|+.++++++++. . .+. .++..||.+|..+|++++|.+.+++++.++.+.+|.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p--~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~-- 77 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-P--DYV----GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ-- 77 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T--TCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--CcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch--
Confidence 5689999999999999999999999999984 2 232 388899999999999999999999999999999995
Q ss_pred HHHHHHHHHHHHHHcCCc
Q 005266 593 QIWALSVLTALYQQLGDR 610 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~ 610 (705)
++...+..++...|..
T Consensus 78 --~~~~~l~~~l~~~~~~ 93 (100)
T 3ma5_A 78 --KDLSELQDAKLKAEGL 93 (100)
T ss_dssp --HHHHHHHHHHHHHHTT
T ss_pred --hHHHHHHHHHHHcccc
Confidence 4444555555555543
No 161
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=6.2e-06 Score=70.76 Aligned_cols=97 Identities=12% Similarity=0.016 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
+.+++.+|.+++..|++++|...+++++++. -.+ ..++..+|.++..+|++++|.+.++.++.+....++...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 6789999999999999999999999999984 223 357889999999999999999999999988776666666
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHH
Q 005266 593 QIWALSVLTALYQQLGDRGNEMEN 616 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~A~e~ 616 (705)
...++..+|.++...|+.+.|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhH
Confidence 677888999999999988776653
No 162
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.10 E-value=2.3e-05 Score=84.75 Aligned_cols=126 Identities=11% Similarity=0.072 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------------hhHHHHHHHHHHHHHHhhCChhh----HHHHH
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-------------KSMQAMCHAYAAVSYFCIGDAES----SSQAI 493 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~-------------~~g~a~a~~nlalv~l~~gd~d~----~~~AL 493 (705)
..+..+..+|..+...|++++|+..|.+|+++.+. ......+..|+|.++...|++++ +.+|+
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 44667889999999999999999999999985332 33456789999999999999877 66666
Q ss_pred HhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHH
Q 005266 494 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA 573 (705)
Q Consensus 494 eli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA 573 (705)
++ .|+ .+.+|+.+|.++...|++++|+..|++|+++. -.|. .++..++.++..+++.+++
T Consensus 301 ~~------~p~-------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---P~~~----~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 301 EI------DPS-------NTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDK----AIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TT------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH----HHHHHHHHHHHHHHHHHHH
T ss_pred Hh------Cch-------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHHHHHHHHH
Confidence 62 233 26689999999999999999999999999984 2232 4677888888888877776
Q ss_pred HHH
Q 005266 574 REI 576 (705)
Q Consensus 574 ~~~ 576 (705)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 643
No 163
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=7.2e-06 Score=70.33 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhh
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
.+..++.+|..+...|++++|..+|.+|+++.++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------------------------------------------- 37 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN--------------------------------------------- 37 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------------------------------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------------------------------------
Confidence 35567789999999999999999999988874431
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREI 576 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~ 576 (705)
+.+++.+|.++...|++++|+..+++++++. ...++......++..+|.++..+|+.++|.+.
T Consensus 38 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 38 -PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSS
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhH
Confidence 3468888999999999999999999999885 44556677778888999999888877665443
No 164
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.08 E-value=5.5e-06 Score=88.17 Aligned_cols=125 Identities=18% Similarity=0.126 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchh
Q 005266 430 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 430 ~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~ 509 (705)
+..+..+..+|..+...|++++|..+|.+|+++.++... +...|++++....+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-----------~~~~~~~~~~~~~l---------------- 228 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-----------FQLYGKYQDMALAV---------------- 228 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-----------HTCCHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-----------hhhcccHHHHHHHH----------------
Confidence 356777889999999999999999999999998765330 11111111111111
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD 589 (705)
+..+|+++|.++...|++++|+.++++++++. -.| ..++..+|.+|..+|++++|.+.+++++.+.-...+
T Consensus 229 --~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 229 --KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE---EKN----PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp --HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 11255666666666666666666666666552 112 235556666666666666666666666666555555
Q ss_pred h
Q 005266 590 I 590 (705)
Q Consensus 590 ~ 590 (705)
.
T Consensus 300 a 300 (338)
T 2if4_A 300 I 300 (338)
T ss_dssp -
T ss_pred H
Confidence 3
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.06 E-value=4.4e-05 Score=69.74 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccc
Q 005266 43 EVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQD 122 (705)
Q Consensus 43 EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~ 122 (705)
.+.....+|.+++ ..+++++|..+|++++.+.+..+ .+++.|+.+|...|.+..|...++++++..+
T Consensus 17 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----- 83 (142)
T 2xcb_A 17 TLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHYDA-------RYFLGLGACRQSLGLYEQALQSYSYGALMDI----- 83 (142)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCccH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----
Confidence 3456677787665 57999999999999999888777 7889999999999999999999999999987
Q ss_pred cccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 005266 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA 160 (705)
Q Consensus 123 ~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A 160 (705)
.+.. .++.+|.++...|++..|+..|++...+.
T Consensus 84 --~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 84 --NEPR---FPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp --TCTH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --CCcH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3444 55678999999999999999999988774
No 166
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.06 E-value=6.1e-05 Score=79.92 Aligned_cols=124 Identities=15% Similarity=0.040 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCc--------hhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHh
Q 005266 43 EVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPS--------CFELKCRTFSLLSQCYHLVGAIPPQKLILYKALD 114 (705)
Q Consensus 43 EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~--------~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~ 114 (705)
.+.+...+|.+++ ..+++++|...|++|+.+.+..+. ...++..+++.|+.||.+.|++..|...++++++
T Consensus 146 ~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYF-KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4667778888776 489999999999999999887642 2345568999999999999999999999999999
Q ss_pred hccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 005266 115 LTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHL 181 (705)
Q Consensus 115 ~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L 181 (705)
..+ .+.+ .++.+|.++...|++..|+..|++...+ ++....+.+.++.++..+
T Consensus 225 ~~p-------~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l----~P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 225 LDS-------NNEK---GLSRRGEAHLAVNDFELARADFQKVLQL----YPNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp HCT-------TCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHH
T ss_pred hCC-------CcHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHH
Confidence 987 4444 5677899999999999999999998887 777788899999988777
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.04 E-value=1e-05 Score=68.67 Aligned_cols=99 Identities=12% Similarity=0.119 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhH
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 512 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~q 512 (705)
+.+.+.+|.++...|++++|..+|.+++++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------------------------------------- 39 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---------------------------------------------- 39 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC----------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----------------------------------------------
Confidence 4455678999999999999999999988764431
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL-HDTVQAREILRSSLT 582 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l-g~~~qA~~~~~~Al~ 582 (705)
+.+++.+|.++...|++++|...+++++++. . . .....++..+|.++... |++++|.++++.++.
T Consensus 40 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~--~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 40 SKYWLMKGKALYNLERYEEAVDCYNYVINVI-E--D--EYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-C--C--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-c--c--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 2356677777777888888888888777663 1 1 11234677788888888 888888877777653
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=4.9e-05 Score=68.17 Aligned_cols=101 Identities=14% Similarity=0.026 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
+..++..|..++..|++++|...++++++.. .+......++..+|.+|...|++++|.+.++.++.+. ++
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~--- 97 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD---GG--- 97 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---SC---
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---cc---
Confidence 6789999999999999999999999998763 2434567899999999999999999999999999762 22
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 593 QIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
...++..+|.++...|++++|.+.++...+.
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 2556678999999999999999988877654
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=1.3e-05 Score=70.78 Aligned_cols=86 Identities=15% Similarity=0.197 Sum_probs=67.9
Q ss_pred HcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHH
Q 005266 445 SVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYG 520 (705)
Q Consensus 445 ~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG 520 (705)
.+|++++|+.+|++|+++..+......+..++|.++...|++++ +.++++ ..|++ +.+++.+|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------~~p~~-------~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK------QFPNH-------QALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTC-------HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCc-------hHHHHHHH
Confidence 47899999999999998854445566789999999999999877 666666 34443 56899999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHH
Q 005266 521 LLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 521 ~~~~~~g~~~eA~~~L~eAL~la 543 (705)
.++...|++++|...+++++...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999985
No 170
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.03 E-value=4.8e-05 Score=64.94 Aligned_cols=99 Identities=13% Similarity=-0.025 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
++..++..|..++..|++++|...+++++... . .+ ..++..+|.++...|++++|.+.+++++.+.. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~--~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~-- 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-P--HN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP---D-- 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---T--
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-C--Cc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc---c--
Confidence 46789999999999999999999999999874 2 23 35788999999999999999999999998732 2
Q ss_pred hHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 592 TQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 592 ~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
...+...+|.++...|++++|.+.++...+.
T Consensus 71 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 71 -WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 2456678999999999999999988766553
No 171
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.03 E-value=0.0082 Score=74.31 Aligned_cols=115 Identities=12% Similarity=0.022 Sum_probs=75.1
Q ss_pred hhhHHhhhhh-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhh
Q 005266 422 SGFVEAQEAC-----ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLI 496 (705)
Q Consensus 422 ~~~~~a~~~~-----~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli 496 (705)
.++..|+..+ .+.-..-++.++.+.|.|+||...|+.++.+.+... .....++++|.. -.++....+++++
T Consensus 1264 ~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~---gmftELaiLyaK-y~peklmEhlk~f 1339 (1630)
T 1xi4_A 1264 KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM---GMFTELAILYSK-FKPQKMREHLELF 1339 (1630)
T ss_pred hHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh---HHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence 3555555543 344455789999999999999999999998875433 123336666665 2444566666665
Q ss_pred ccccccCC-ccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 005266 497 GPVYQMKD-TINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 542 (705)
Q Consensus 497 ~~~~~~~~-~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~l 542 (705)
.....-|. =+.+. ++..|--+...|.+-|+++.|....-++...
T Consensus 1340 ~~rini~k~~r~~e--~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~ 1384 (1630)
T 1xi4_A 1340 WSRVNIPKVLRAAE--QAHLWAELVFLYDKYEEYDNAIITMMNHPTD 1384 (1630)
T ss_pred HHhcccchHhHHHH--HHHHHHHHHHHHHhcccHHHHHHHHHhccHh
Confidence 54322221 01222 6778888889999999999999666655433
No 172
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.03 E-value=2.4e-05 Score=73.63 Aligned_cols=120 Identities=10% Similarity=0.074 Sum_probs=97.5
Q ss_pred hhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHH
Q 005266 57 HTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQL 136 (705)
Q Consensus 57 ~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~l 136 (705)
..+++++|...+++++.+.+..+ .+++.++.+|...|++..|...++++++..+ .+.. +++.+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------~~~~---~~~~l 84 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNS-------EQWALLGEYYLWQNDYSNSLLAYRQALQLRG-------ENAE---LYAAL 84 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-------SCHH---HHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHH---HHHHH
Confidence 46789999999999988877666 7889999999999999999999999999887 3333 56778
Q ss_pred HHH-HhhcCCH--HHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHH
Q 005266 137 ANA-FIIEGDY--QSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRV 200 (705)
Q Consensus 137 A~~-~~~~~d~--~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~ 200 (705)
|.+ +...|++ ..|+..++++... ++....+.+.++.++..+ .+++++...+.++-..
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALAL----DSNEITALMLLASDAFMQ---ANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHc---ccHHHHHHHHHHHHhh
Confidence 998 8889998 9999999998887 777788999999998887 7888888777666444
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.01 E-value=3.4e-06 Score=94.33 Aligned_cols=123 Identities=12% Similarity=0.026 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccch
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTING 508 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g 508 (705)
+..++.+|..+...|++++|+.+|++|+++.++. +.+..++|.++...|++++ +.+|+++ .|++
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~--- 73 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIEL------DKKY--- 73 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTC---
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCC---
Confidence 3445567888999999999999999999997764 4668899999999999877 6777763 3332
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH--HHHCCChHHHHHHHH
Q 005266 509 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL--ALALHDTVQAREILR 578 (705)
Q Consensus 509 ~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i--~~~lg~~~qA~~~~~ 578 (705)
+.+|+.+|.++..+|++++|...+++|+++. . .+. .++..+|.+ +...|++++|.+.++
T Consensus 74 ----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p--~~~----~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 74 ----IKGYYRRAASNMALGKFRAALRDYETVVKVK-P--HDK----DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-T--TCT----THHHHHHHHHHHHHHHHHCCC-----
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--CCH----HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5689999999999999999999999999984 2 222 255566766 888899999999988
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.01 E-value=1.9e-05 Score=70.89 Aligned_cols=96 Identities=13% Similarity=-0.010 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 594 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~ 594 (705)
.++..|..++..|++++|...++++++.. -.+ +.++..||.++...|++++|...+++|+.+. ++ -.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~---~~ 85 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE---PER----EEAWRSLGLTQAENEKDGLAIIALNHARMLD---PK---DI 85 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT---CH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC---CH
Confidence 57889999999999999999999999884 223 3588899999999999999999999999873 22 24
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 595 WALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 595 ~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
.+...||.+|...|++++|.+.++...+.
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46678999999999999999988876654
No 175
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.93 E-value=8.8e-05 Score=63.90 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchh
Q 005266 430 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 430 ~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~ 509 (705)
|..+.+++.+|.++...|++++|+.+|++|+++.++.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------------- 40 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY------------------------------------------- 40 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------------------------------------
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------------------------------------
Confidence 3456788899999999999999999999998875432
Q ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 005266 510 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILG 561 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG 561 (705)
+.+|+.+|.++...|++++|...+++++++. ...++.+........++
T Consensus 41 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 41 ---VGTYYHLGKLYERLDRTDDAIDTYAQGIEVA-REEGTQKDLSELQDAKL 88 (100)
T ss_dssp ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHSCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-hcCCchhHHHHHHHHHH
Confidence 2378999999999999999999999999998 45777666555444443
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.90 E-value=0.00012 Score=81.15 Aligned_cols=125 Identities=12% Similarity=0.027 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCc--------hhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 005266 42 IEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPS--------CFELKCRTFSLLSQCYHLVGAIPPQKLILYKAL 113 (705)
Q Consensus 42 ~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~--------~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai 113 (705)
..+.+...+|.+++. .+++++|..+|++|+.+.+..+. ...++..+++.++.||.++|++..|...+++++
T Consensus 266 ~~a~~~~~~G~~~~~-~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFK-GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 346677788888876 88999999999999999887742 335567899999999999999999999999999
Q ss_pred hhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 005266 114 DLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHL 181 (705)
Q Consensus 114 ~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L 181 (705)
++.+ .+.+ .++.+|.+|...++|..|+..|++...+ ++....+...++.++..+
T Consensus 345 ~~~p-------~~~~---a~~~~g~a~~~~g~~~~A~~~~~~al~l----~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 345 GLDS-------ANEK---GLYRRGEAQLLMNEFESAKGDFEKVLEV----NPQNKAARLQISMCQKKA 398 (457)
T ss_dssp HHST-------TCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHTT----C----CHHHHHHHHHHHH
T ss_pred hcCC-------ccHH---HHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHH
Confidence 9987 4444 5677899999999999999999998776 677778888888888777
No 177
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.87 E-value=0.00012 Score=76.42 Aligned_cols=136 Identities=18% Similarity=0.049 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhH
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 512 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~q 512 (705)
..+...++..+...|++++|...|...+... .+.. +..+.+.++...++++.. ++.+.+....+. .. . .
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~-~~~~~a~l~~~~~r~~dA---~~~l~~a~~~~d-~~-~--~ 170 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAG---SEHL-VAWMKAVVYGAAERWTDV---IDQVKSAGKWPD-KF-L--A 170 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHH-HHHHHHHHHHHTTCHHHH---HHHHTTGGGCSC-HH-H--H
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchH-HHHHHHHHHHHcCCHHHH---HHHHHHhhccCC-cc-c--H
Confidence 4455678899999999999999998755432 3444 778889999998886554 444445433231 11 1 2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
..+++++|.++...|++++|+.+|++++. ...++.....+...+|.++.++|+.++|...+++++..
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEAND----SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT----STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45899999999999999999999998852 11125556678899999999999999999999999864
No 178
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.84 E-value=0.00014 Score=63.57 Aligned_cols=75 Identities=23% Similarity=0.200 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
+.+++.+|.++...|++++|...+++++++. . .+ ..++..+|.+|...|++++|.+.++.++.+....++...
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-P--TY----SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQV 91 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-C--Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHH
Confidence 5689999999999999999999999999884 2 22 347889999999999999999999999999998888644
Q ss_pred HH
Q 005266 593 QI 594 (705)
Q Consensus 593 q~ 594 (705)
..
T Consensus 92 ~~ 93 (115)
T 2kat_A 92 VK 93 (115)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.83 E-value=0.00012 Score=79.01 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc----------cCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM----------GNLQLVSQYLTILGNLALALHDTVQAREILRSSL 581 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~----------gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al 581 (705)
.+..|+.+|..++.+|++++|...+++|+++.. .. ......+.++..+|.+|..+|++++|.+.+++|+
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE-GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh-cCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 467899999999999999999999999999763 22 1335667899999999999999999999999999
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 582 TLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 582 ~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
.+. +....++..+|.+|...|++++|.+.++.+.+..
T Consensus 301 ~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 301 EID------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp TTC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhC------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 762 2346778899999999999999999988877653
No 180
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.81 E-value=7.6e-05 Score=82.53 Aligned_cols=104 Identities=8% Similarity=-0.085 Sum_probs=91.1
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc--CChhhHHHHHHHH
Q 005266 524 MRQQDFQEARNRLAKGLQIAHNHMG-NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL--YDIPTQIWALSVL 600 (705)
Q Consensus 524 ~~~g~~~eA~~~L~eAL~la~~e~g-n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~--gD~~~q~~al~~L 600 (705)
..+|+|++|...++++|.+..+-.| +...++.++..||.+|..+|++++|+.++++++++.++. .+.+..+.++..|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3689999999999999987533222 345688899999999999999999999999999999886 5677889999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHH
Q 005266 601 TALYQQLGDRGNEMENDEYRRKKLDEL 627 (705)
Q Consensus 601 ~~l~~~~Gd~~~A~e~~~~~~~~~~~l 627 (705)
|.+|...|++++|...++.+.++.+..
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988853
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.80 E-value=3.9e-05 Score=64.98 Aligned_cols=98 Identities=11% Similarity=0.149 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
+.+++.+|.+++..|++++|...+++++++. ..+ ..++..+|.++...|++++|.+.+++++.+... ..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~ 74 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EY 74 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cc
Confidence 3468889999999999999999999999884 223 347889999999999999999999999876322 11
Q ss_pred HHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Q 005266 593 QIWALSVLTALYQQL-GDRGNEMENDEYRR 621 (705)
Q Consensus 593 q~~al~~L~~l~~~~-Gd~~~A~e~~~~~~ 621 (705)
...+...++.++... |++++|.+.+....
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 75 NKDVWAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp CHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 355667899999999 99999999877654
No 182
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.68 E-value=0.00016 Score=74.46 Aligned_cols=100 Identities=16% Similarity=0.043 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
+.+++..|..++..|++++|...+++++++. -.+ +.++..+|.+|..+|++++|.+.++.|+.+. +.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~ 70 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLV----AVYYTNRALCYLKMQQPEQALADCRRALELD------GQ 70 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---Ccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CC
Confidence 6789999999999999999999999999884 223 3588899999999999999999999998761 22
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 593 QIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
-..++..+|.+|...|++++|.+.+..+.+..-
T Consensus 71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 356778899999999999999999988877653
No 183
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.68 E-value=0.00038 Score=57.08 Aligned_cols=83 Identities=25% Similarity=0.234 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
+.+++.+|.++...|++++|..++++++++. . .+ ..++..+|.++...|++++|.+.+++++.+. + .
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p---~ 75 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-P--NN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---P---N 75 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T--TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T---T
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-C--CC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---C---C
Confidence 6689999999999999999999999999884 2 23 3578899999999999999999999999762 1 2
Q ss_pred HHHHHHHHHHHHHHcC
Q 005266 593 QIWALSVLTALYQQLG 608 (705)
Q Consensus 593 q~~al~~L~~l~~~~G 608 (705)
...+...+|.++...|
T Consensus 76 ~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 2455677888887655
No 184
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.64 E-value=0.0004 Score=60.53 Aligned_cols=87 Identities=17% Similarity=0.090 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh----HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHh
Q 005266 451 EAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ 526 (705)
Q Consensus 451 eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~----~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~ 526 (705)
+|+..|.++++..++.. .+..++|.++...|++++ +.+++++ .|++ +.+|+.+|.++...
T Consensus 3 ~a~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~-------~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQGTDNM---LLRFTLGKTYAEHEQFDAALPHLRAALDF------DPTY-------SVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTTTCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcH---HHHHHHHHHHHHccCHHHHHHHHHHHHHH------CCCc-------HHHHHHHHHHHHHc
Confidence 35556666665554422 345555666666666544 3444441 2221 45889999999999
Q ss_pred cCHHHHHHHHHHHHHHHHhcccCHHHHH
Q 005266 527 QDFQEARNRLAKGLQIAHNHMGNLQLVS 554 (705)
Q Consensus 527 g~~~eA~~~L~eAL~la~~e~gn~~l~a 554 (705)
|++++|+..+++++++. ...++.....
T Consensus 67 g~~~~A~~~~~~al~~~-~~~~~~~~~~ 93 (115)
T 2kat_A 67 GDRAGARQAWESGLAAA-QSRGDQQVVK 93 (115)
T ss_dssp TCHHHHHHHHHHHHHHH-HHHTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhc-cccccHHHHH
Confidence 99999999999999997 4566654433
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.61 E-value=9e-05 Score=65.26 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=70.1
Q ss_pred hcchHHHHHHHHHHHHH---hhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHH
Q 005266 58 THNVNHAKSHLERSQLL---LKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNS 134 (705)
Q Consensus 58 T~N~~~A~thLeka~~l---~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~ 134 (705)
.+++++|+.+|++++.+ .+..+ .+++.|+.+|...|.+..|...++++++..+ .+.. .++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------~~~~---~~~ 65 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLA-------ECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-------NHQA---LRV 65 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHH---HHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CchH---HHH
Confidence 57889999999999876 34433 7889999999999999999999999999987 4444 566
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHH
Q 005266 135 QLANAFIIEGDYQSSISALQSGYVC 159 (705)
Q Consensus 135 ~lA~~~~~~~d~~~A~~~L~~~~~~ 159 (705)
.+|.++...|++..|+..|++....
T Consensus 66 ~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 66 FYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7899999999999999999998876
No 186
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.54 E-value=0.0027 Score=68.48 Aligned_cols=145 Identities=11% Similarity=0.050 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh---hCChh-h----HHHHHHhhccc
Q 005266 431 CESMIEMLRGQYAHSVGCY---SEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC---IGDAE-S----SSQAIDLIGPV 499 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~---~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~---~gd~d-~----~~~ALeli~~~ 499 (705)
.++.-+++.|..+..++.. .+|..+|++|++++++.. .+.+ .++++|.. .+..+ . ..++++....+
T Consensus 194 ~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a-~A~A--~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 194 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT-YARA--EKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp GGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH-HHHH--HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH-HHHH--HHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 4577778888888887665 679999999999998732 1222 22222221 12111 1 34444432222
Q ss_pred cccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005266 500 YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 579 (705)
Q Consensus 500 ~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~ 579 (705)
...|. .+.+|..+|.+++..|++++|...+++|+.+ + -+ +.++..+|.++.-.|++++|.+.|+.
T Consensus 271 ~~~~~-------~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n---~s----~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 271 PELNN-------LSIIYQIKAVSALVKGKTDESYQAINTGIDL-E---MS----WLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp GGGTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C---CC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCc-------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C---CC----HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12233 3678999999999999999999999999998 2 12 45789999999999999999999999
Q ss_pred HHHHHHHcCChhhHHHH
Q 005266 580 SLTLAKKLYDIPTQIWA 596 (705)
Q Consensus 580 Al~LArk~gD~~~q~~a 596 (705)
|+.+ .+..+.-.|+
T Consensus 336 AlrL---~P~~~t~~~~ 349 (372)
T 3ly7_A 336 AFNL---RPGANTLYWI 349 (372)
T ss_dssp HHHH---SCSHHHHHHH
T ss_pred HHhc---CCCcChHHHH
Confidence 9987 3444444443
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.46 E-value=0.00024 Score=79.36 Aligned_cols=133 Identities=8% Similarity=-0.064 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhcccccccccc
Q 005266 46 TRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAV 125 (705)
Q Consensus 46 ~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~ 125 (705)
+...+|.++ ...+++++|...+++|+.+.+..+ .+++.++.+|.+.|++..|...++++++..+ .
T Consensus 8 ~~~~lg~~~-~~~g~~~~A~~~~~~Al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------~ 72 (477)
T 1wao_1 8 ELKTQANDY-FKAKDYENAIKFYSQAIELNPSNA-------IYYGNRSLAYLRTECYGYALGDATRAIELDK-------K 72 (477)
T ss_dssp TSSSSSSST-TTTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-------T
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHHhCCccH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------C
Confidence 333444443 357899999999999999877776 8899999999999999999999999999887 3
Q ss_pred chhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHHh
Q 005266 126 KLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVW 201 (705)
Q Consensus 126 ~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~~ 201 (705)
+.. .++.+|.++...|++..|++.++++.++ ++....+...++.+...+.+ .++++++..+.+...+.
T Consensus 73 ~~~---~~~~lg~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~-g~~~~A~~~~~~~~~~~ 140 (477)
T 1wao_1 73 YIK---GYYRRAASNMALGKFRAALRDYETVVKV----KPHDKDAKMKYQECNKIVKQ-KAFERAIAGDEHKRSVV 140 (477)
T ss_dssp CHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHH----STTCTTHHHHHHHHHHHHHH-HHHCCC------CCSTT
T ss_pred CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHH-HHHHHHhccccccchhH
Confidence 333 5567899999999999999999998886 55555666667776333322 56666666665433333
No 188
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.35 E-value=0.0013 Score=60.36 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHH-
Q 005266 447 GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR- 525 (705)
Q Consensus 447 g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~- 525 (705)
+++++|...|++|++...... . ++.+|...+..+. |++.++..... + . +.+++.+|..+..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a-----~--lg~~y~~g~~~~~---A~~~~~~Aa~~-g----~---~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFG-----C--LSLVSNSQINKQK---LFQYLSKACEL-N----S---GNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH-----H--HHHHTCTTSCHHH---HHHHHHHHHHT-T----C---HHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcCCCHhh-----h--HHHHHHcCCCHHH---HHHHHHHHHcC-C----C---HHHHHHHHHHHHcC
Confidence 467889999999987643222 2 7888776544333 55544443221 2 1 5689999999998
Q ss_pred ---hcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH----CCChHHHHHHHHHHHHH
Q 005266 526 ---QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA----LHDTVQAREILRSSLTL 583 (705)
Q Consensus 526 ---~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~----lg~~~qA~~~~~~Al~L 583 (705)
.+++++|..++++|.+ .|+ ..+...||.+|.. .+|.++|.+.++.|..+
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~-----~g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACG-----LND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHH-----TTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHc-----CCC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 8999999999999843 345 3578899999999 89999999999998764
No 189
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.34 E-value=0.021 Score=59.98 Aligned_cols=236 Identities=12% Similarity=0.048 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHh-HHHHHhhhh
Q 005266 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLE-NKVAVELTR 421 (705)
Q Consensus 343 ~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le-~~~~~~L~~ 421 (705)
.+.-|+...+-. +...++|.+.+.+++.. .|. +-..|-.+--+ +.-|. ....-+|..
T Consensus 34 ~~~~~~~a~~~~--~e~s~~aL~~t~~~L~~----------nP~-------~~taWn~R~~~---L~~l~~~~~~eeL~~ 91 (306)
T 3dra_A 34 QIMGLLLALMKA--EEYSERALHITELGINE----------LAS-------HYTIWIYRFNI---LKNLPNRNLYDELDW 91 (306)
T ss_dssp HHHHHHHHHHHT--TCCSHHHHHHHHHHHHH----------CTT-------CHHHHHHHHHH---HHTCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHH----------CcH-------HHHHHHHHHHH---HHHcccccHHHHHHH
Confidence 344444444332 23336888888888885 222 24677433211 00011 011122334
Q ss_pred hhhHHhhhhhHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChh--h----
Q 005266 422 SGFVEAQEACESMIEMLRGQYA----HSV---GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE--S---- 488 (705)
Q Consensus 422 ~~~~~a~~~~~a~~~~llG~~~----~~~---g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d--~---- 488 (705)
++-+...+|....+-+..|.+. ... +++++++..+.++++..+.+. .+..+ -+.+....|+++ +
T Consensus 92 ~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny-~aW~~--R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 92 CEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH-HVWSY--RKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH-HHHHH--HHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH-HHHHH--HHHHHHHhcccChHHHHHH
Confidence 4444555666677777788888 666 899999999999999988755 12112 234444456654 3
Q ss_pred HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Q 005266 489 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD------FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGN 562 (705)
Q Consensus 489 ~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~------~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~ 562 (705)
+.++++ ..|.+ -.+|+..|.+....++ +++++++..+++... -+|. .+.+.++.
T Consensus 169 ~~~~i~------~d~~N-------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~---p~n~----SaW~y~~~ 228 (306)
T 3dra_A 169 VDKVID------TDLKN-------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC---PQNP----STWNYLLG 228 (306)
T ss_dssp HHHHHH------HCTTC-------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC---SSCH----HHHHHHHH
T ss_pred HHHHHH------hCCCC-------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC---CCCc----cHHHHHHH
Confidence 566665 23433 4589999999988887 999999999999883 4452 47888999
Q ss_pred HHHHCCChHHHH-HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 005266 563 LALALHDTVQAR-EILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 626 (705)
Q Consensus 563 i~~~lg~~~qA~-~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 626 (705)
++...|....+. +.+++.+.+- ...+.-.+++..|+++|...|+.++|.+++....++.|-
T Consensus 229 ll~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dp 290 (306)
T 3dra_A 229 IHERFDRSITQLEEFSLQFVDLE---KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNP 290 (306)
T ss_dssp HHHHTTCCGGGGHHHHHTTEEGG---GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHhcCCChHHHHHHHHHHHhcc---CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccCh
Confidence 999999754433 3444444321 011234577889999999999999999988887654443
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.33 E-value=0.00022 Score=75.67 Aligned_cols=106 Identities=14% Similarity=0.027 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc------C-----HHHHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG------N-----LQLVSQYLTILGNLALALHDTVQAREILRSS 580 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~g------n-----~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~A 580 (705)
.+..++..|..++..|+|++|...+++|+++.. ... + ..+...++..+|.+|..+|++++|.+.++.|
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p-~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG-DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC-HHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 367899999999999999999999999998842 111 0 0112248899999999999999999999999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 581 LTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 581 l~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
+.+. +....++..+|.+|...|++++|.+.++.+.+..
T Consensus 257 l~~~------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 257 LTEE------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp HHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9863 1236778899999999999999999888776554
No 191
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.32 E-value=0.00061 Score=75.33 Aligned_cols=181 Identities=14% Similarity=0.049 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~ 510 (705)
.++......|..+...|++++|+.+|+.+.+..++ +.+...++..|...|+.+. +.+.+. .|+
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~----~~i~~~Li~~Y~Klg~l~e---~e~f~~----~pn------ 121 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE----SYVETELIFALAKTNRLAE---LEEFIN----GPN------ 121 (449)
T ss_dssp ------------------------------------------------------CHHH---HTTTTT----CC-------
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc----chhHHHHHHHHHHhCCHHH---HHHHHc----CCc------
Confidence 45667788899999999999999998888774322 2334445556666677443 333332 233
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 590 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~ 590 (705)
..+|+.+|..++..|++++|+.++.++ ..+..||+++.++|++++|.+.+++| +++
T Consensus 122 --~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~ 177 (449)
T 1b89_A 122 --NAHIQQVGDRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKA-------NST 177 (449)
T ss_dssp -----------------CTTTHHHHHHHT---------------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHh---------------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCc
Confidence 248999999999999999999999955 25667889999999999998888887 332
Q ss_pred h---hHHHH-----------------------HHHHHHHHHHcCCchHHHHHHHHH-------HHHHHHHHHHHHHhh--
Q 005266 591 P---TQIWA-----------------------LSVLTALYQQLGDRGNEMENDEYR-------RKKLDELQKRLADAY-- 635 (705)
Q Consensus 591 ~---~q~~a-----------------------l~~L~~l~~~~Gd~~~A~e~~~~~-------~~~~~~l~~~~~~a~-- 635 (705)
. ..+.+ +..+...|...|.+++|...++.. +.++..|.--++.-.
T Consensus 178 ~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~ 257 (449)
T 1b89_A 178 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 257 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHH
Confidence 1 00011 223447889999999998888877 555555533222222
Q ss_pred cchhhHHHHhhhccchhc
Q 005266 636 SSIHHIELISKVKLEVQQ 653 (705)
Q Consensus 636 ~~~~h~~l~~~~~~~~~~ 653 (705)
..-+|..+. |.|+.+.+
T Consensus 258 k~~ehl~~~-~~~ini~k 274 (449)
T 1b89_A 258 KMREHLELF-WSRVNIPK 274 (449)
T ss_dssp HHHHHHHHH-STTSCHHH
T ss_pred HHHHHHHHH-HHHhcCcH
Confidence 233444322 45555543
No 192
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.17 E-value=0.026 Score=59.57 Aligned_cols=165 Identities=14% Similarity=0.013 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhH
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 512 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~q 512 (705)
...+.++|.++...|++++|+..+.+.+...++ .+...+..-++.+++..|+++.....++-+... .|+ ...-...
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d-~~~~~d~ 175 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEA-EGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IED-TVSGDNE 175 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCH-HHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccc-ccccchH
Confidence 444569999999999999999999998765442 244455667788899999988755555443332 120 0000002
Q ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh
Q 005266 513 ASLHFAYGLLLMRQQ--DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 590 (705)
Q Consensus 513 A~al~~lG~~~~~~g--~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~ 590 (705)
.......|++.+.+| ++.+|...|++.... .++ . .....++. ++.++|+.++|++.++....+.=+.+..
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~--~-~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k 247 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT----FPT--W-KTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQK 247 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCS--H-HHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTC
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCC--c-ccHHHHHH-HHHHcCCHHHHHHHHHHHHHhccccccc
Confidence 335555577778888 999999999996322 232 1 11233343 8999999999999999666554221110
Q ss_pred ----hhHHHHHHHHHHHHHHcCC
Q 005266 591 ----PTQIWALSVLTALYQQLGD 609 (705)
Q Consensus 591 ----~~q~~al~~L~~l~~~~Gd 609 (705)
+.-..++.++..+....|+
T Consensus 248 ~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 248 ENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp HHHHSSHHHHHHHHHHHHHHTTC
T ss_pred ccCCCCCHHHHHHHHHHHHHhCh
Confidence 1225566666667777887
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.13 E-value=0.00072 Score=64.48 Aligned_cols=83 Identities=6% Similarity=-0.041 Sum_probs=63.3
Q ss_pred HHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChh----------h----HHHHHHhhccccccCCccchh
Q 005266 444 HSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE----------S----SSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 444 ~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d----------~----~~~ALeli~~~~~~~~~~~g~ 509 (705)
.+.++|++|...|.+|+++.++.. .+..|+|.++...|+++ + +++|++ -.|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~a---ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~------ldP~----- 78 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDA---DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL------IDPK----- 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------HCTT-----
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH------hCcC-----
Confidence 456789999999999999977633 35677777777766543 2 455555 2344
Q ss_pred hhHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHH
Q 005266 510 REEASLHFAYGLLLMRQQ-----------DFQEARNRLAKGLQI 542 (705)
Q Consensus 510 ~~qA~al~~lG~~~~~~g-----------~~~eA~~~L~eAL~l 542 (705)
.+.+|+.+|.++...| ++++|+.+|++|+.+
T Consensus 79 --~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 79 --KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp --CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 2679999999999885 899999999999999
No 194
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.09 E-value=0.0025 Score=55.47 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
+.-+|.+|..++..|+|..|...+++|++....+.........++..||.++..+|+.+.|..+++.++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45688999999999999999999999999974221112345678999999999999999999999999876
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.07 E-value=0.0042 Score=50.63 Aligned_cols=80 Identities=19% Similarity=0.135 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCc
Q 005266 87 RTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYP 166 (705)
Q Consensus 87 ~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~ 166 (705)
.+++.++.+|...|++..|...++++++..+ .+.+ .++.+|.++...|++..|+..+++...+ ++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~---~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~p~ 75 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAE---AWYNLGNAYYKQGDYDEAIEYYQKALEL----DPN 75 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-------CCHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhc----CCC
Confidence 5778899999999999999999999999876 3333 5567899999999999999999998886 666
Q ss_pred hHHHHHHHHHHHHH
Q 005266 167 DLQMFFATAILHVH 180 (705)
Q Consensus 167 ~~~~~~~La~~~~~ 180 (705)
...+.+.++.++..
T Consensus 76 ~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 76 NAEAKQNLGNAKQK 89 (91)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 77788888877644
No 196
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.02 E-value=0.009 Score=63.04 Aligned_cols=161 Identities=9% Similarity=-0.050 Sum_probs=105.5
Q ss_pred HHHHhHHHhhhcccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhh
Q 005266 7 GLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKC 86 (705)
Q Consensus 7 ~L~~lAe~~~~~~~i~~ai~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~ 86 (705)
++=.+|+++.+. ++.=|+..+.... |.. -+++-+|+++.. .+|+++|...|++++...+. ....
T Consensus 73 a~~~la~~~~~~-----a~~~l~~l~~~~~---~~~--~~~~~la~i~~~-~g~~eeAL~~l~~~i~~~~~-----~~~l 136 (310)
T 3mv2_B 73 VLDLYVQFLDTK-----NIEELENLLKDKQ---NSP--YELYLLATAQAI-LGDLDKSLETCVEGIDNDEA-----EGTT 136 (310)
T ss_dssp HHHHHHHHHTTT-----CCHHHHHTTTTSC---CCH--HHHHHHHHHHHH-HTCHHHHHHHHHHHHTSSCS-----TTHH
T ss_pred HHHHHHHHhccc-----HHHHHHHHHhcCC---CCc--HHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCC-----cCcH
Confidence 455567776533 5666776664332 222 234656655555 69999999999986332220 2334
Q ss_pred hHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhh-HhHHHHHHHH--HhhcC--CHHHHHHHHHHHHHHHh
Q 005266 87 RTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWS-CNFNSQLANA--FIIEG--DYQSSISALQSGYVCAT 161 (705)
Q Consensus 87 ~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~-~~f~~~lA~~--~~~~~--d~~~A~~~L~~~~~~A~ 161 (705)
++..+++++|.++|....|+..+++..+..+ +..|. -.-+.++++. ....| ++..|..+|+++...
T Consensus 137 ea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~-------d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-- 207 (310)
T 3mv2_B 137 ELLLLAIEVALLNNNVSTASTIFDNYTNAIE-------DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-- 207 (310)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-------HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-------cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--
Confidence 7888999999999999999999988766543 21232 2344566654 55555 999999999997543
Q ss_pred hcCCc--hHHHHHHHHHHHHHhcccCChhHHHHHHHHhHHH
Q 005266 162 EISYP--DLQMFFATAILHVHLMQWDDENSVLRSINQCDRV 200 (705)
Q Consensus 162 ~~~~~--~~~~~~~La~~~~~L~~~~~~~~v~~al~~~~~~ 200 (705)
.+. ....++. ++.++ .++++++..|..+.+.
T Consensus 208 --~p~~~~~~lLln---~~~~~---g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 208 --FPTWKTQLGLLN---LHLQQ---RNIAEAQGIVELLLSD 240 (310)
T ss_dssp --SCSHHHHHHHHH---HHHHH---TCHHHHHHHHHHHHSH
T ss_pred --CCCcccHHHHHH---HHHHc---CCHHHHHHHHHHHHHh
Confidence 332 2344444 66666 8999999998766544
No 197
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.80 E-value=0.11 Score=56.52 Aligned_cols=182 Identities=15% Similarity=-0.020 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHhh-CChhh-HHHHHHhhccccccCCccchhh
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKITES--KSMQAMCHAYAAVSYFCI-GDAES-SSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~--~~g~a~a~~nlalv~l~~-gd~d~-~~~ALeli~~~~~~~~~~~g~~ 510 (705)
+.+-||.++...|+.++-...+......... ..--+-...++--.+... +..+. ++-+++.++-. . ..++.-+
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~-~~~r~fl- 97 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-K-QEKRTFL- 97 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-H-HTTCHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-H-HHHHHHH-
Confidence 4457899999999999988888765444443 122223333332222222 22222 33333333322 0 0111211
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc-CC
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL-YD 589 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~-gD 589 (705)
+...=.-+|..++..|+|.+|...+.+.++-+++ ..+....-..+..-..+|+.+|+..++...+.+|.+.+..+ .|
T Consensus 98 -r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~-~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 98 -RQSLEARLIALYFDTALYTEALALGAQLLRELKK-LDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred -HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 1122236788999999999999999999999854 55566667788888899999999999999999999999998 88
Q ss_pred hhhHHHHHHHHHHHHH-HcCCchHHHHHHHHHH
Q 005266 590 IPTQIWALSVLTALYQ-QLGDRGNEMENDEYRR 621 (705)
Q Consensus 590 ~~~q~~al~~L~~l~~-~~Gd~~~A~e~~~~~~ 621 (705)
+..++..-..-|.+|. ..|++..|...|-..-
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 8888888888888999 8999988877665543
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.70 E-value=0.012 Score=53.63 Aligned_cols=88 Identities=15% Similarity=0.069 Sum_probs=74.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH----CCChHHHHHHHHHHHHHHHHcCChhhHH
Q 005266 519 YGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA----LHDTVQAREILRSSLTLAKKLYDIPTQI 594 (705)
Q Consensus 519 lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~----lg~~~qA~~~~~~Al~LArk~gD~~~q~ 594 (705)
+|..+...+..++|..++++|.+ .|+ +.+...||.+|.. .+|.++|.+.+++|... |+ .
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~-----~g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~----~ 93 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACE-----LNS----GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----ND----Q 93 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHH-----TTC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TC----H
T ss_pred HHHHHHcCCCHHHHHHHHHHHHc-----CCC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CC----H
Confidence 89888888899999999998843 345 3688899999999 89999999999999753 66 5
Q ss_pred HHHHHHHHHHHH----cCCchHHHHHHHHHHHH
Q 005266 595 WALSVLTALYQQ----LGDRGNEMENDEYRRKK 623 (705)
Q Consensus 595 ~al~~L~~l~~~----~Gd~~~A~e~~~~~~~~ 623 (705)
.+...||.+|.. .+|+++|.++++.+.+.
T Consensus 94 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 94 DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 677889999999 89999999998877654
No 199
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.69 E-value=0.014 Score=64.47 Aligned_cols=202 Identities=14% Similarity=0.103 Sum_probs=92.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhhhhH
Q 005266 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (705)
Q Consensus 346 ~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~~~~ 425 (705)
.|...+..+...|.+++|.+|++.+.+... . +. +...-+|||-++ .+|.
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~~~----~---------~~-----i~~~Li~~Y~Kl-------------g~l~ 111 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKKAR----E---------SY-----VETELIFALAKT-------------NRLA 111 (449)
T ss_dssp -----------------------------------------------------------------------------CHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCc----c---------ch-----hHHHHHHHHHHh-------------CCHH
Confidence 666667778889999999999998887411 1 01 111122332221 1333
Q ss_pred Hhhhh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhcccccc
Q 005266 426 EAQEA---CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQM 502 (705)
Q Consensus 426 ~a~~~---~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~ 502 (705)
.+.+. ........+|..+...|++++|..+|.++ + . ..++|.++.+.|++++ |++.++..
T Consensus 112 e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----~--n-----~~~LA~~L~~Lg~yq~---AVea~~KA--- 174 (449)
T 1b89_A 112 ELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----S--N-----FGRLASTLVHLGEYQA---AVDGARKA--- 174 (449)
T ss_dssp HHTTTTTCC----------------CTTTHHHHHHHT----T--C-----HHHHHHHHHTTTCHHH---HHHHHHHH---
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----h--h-----HHHHHHHHHHhccHHH---HHHHHHHc---
Confidence 32222 12237889999999999999999999976 1 2 6677888888899766 33322222
Q ss_pred CCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 005266 503 KDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 582 (705)
Q Consensus 503 ~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~ 582 (705)
+ ...+|-..+.++...|++..|..+... +. -+ +.-+..+...|...|..++|...++.|+.
T Consensus 175 -~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~---L~----~~----ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 175 -N-------STRTWKEVCFACVDGKEFRLAQMCGLH---IV----VH----ADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp -T-------CHHHHHHHHHHHHHTTCHHHHHHTTTT---TT----TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred -C-------CchhHHHHHHHHHHcCcHHHHHHHHHH---HH----hC----HhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 1 144788888889999999999655442 21 11 12244588999999999999999999996
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005266 583 LAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 583 LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
+= +-+ .-+...|+.+|..- +|++-+|+.+.+-
T Consensus 236 le----~ah--~~~ftel~il~~ky-~p~k~~ehl~~~~ 267 (449)
T 1b89_A 236 LE----RAH--MGMFTELAILYSKF-KPQKMREHLELFW 267 (449)
T ss_dssp ST----TCC--HHHHHHHHHHHHTT-CHHHHHHHHHHHS
T ss_pred Cc----HHH--HHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 63 222 33445567777543 6788888776554
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.62 E-value=0.0052 Score=51.46 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHH-HH
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEAS-LH 516 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~-al 516 (705)
..|..+...|++++|...|+++++..++. +. ++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~----------------------------------------------~~~~~ 38 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVG----------------------------------------------KDEAY 38 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSST----------------------------------------------HHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCc----------------------------------------------HHHHH
Confidence 45677777777777777777776653321 23 56
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Q 005266 517 FAYGLLLMRQQDFQEARNRLAKGLQI 542 (705)
Q Consensus 517 ~~lG~~~~~~g~~~eA~~~L~eAL~l 542 (705)
+.+|.++...|++++|+..+++++++
T Consensus 39 ~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 39 YLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666677777777777777777666
No 201
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.56 E-value=0.034 Score=60.00 Aligned_cols=134 Identities=15% Similarity=0.119 Sum_probs=89.0
Q ss_pred HHHHHhhCChhhHHHHHHhhcccc-ccCCccchhhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcccCHH
Q 005266 477 AVSYFCIGDAESSSQAIDLIGPVY-QMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNLQ 551 (705)
Q Consensus 477 alv~l~~gd~d~~~~ALeli~~~~-~~~~~~~g~~~qA~al~~lG~~~~~----~g~~~eA~~~L~eAL~la~~e~gn~~ 551 (705)
|.-++..++.+...+|+++++... ..|+. +.+|-.+++++.. .+........++++++.. .+.....
T Consensus 203 a~~~l~~~~~~~~~~A~~l~e~Al~lDP~~-------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~-~a~~~~~ 274 (372)
T 3ly7_A 203 AHDYLLHGDDKSLNRASELLGEIVQSSPEF-------TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI-VTLPELN 274 (372)
T ss_dssp HHHHHHHCSHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH-HTCGGGT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH-HhcccCC
Confidence 344555567666666666666543 23553 2233333333321 112233445556666644 2344446
Q ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 552 LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 552 l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
..+.++..++..++..|++++|...+++|+.+- ++ ..++..+|.++...|++++|.+.++.+.+..=
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MS----WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 677889999999998999999999999999993 32 34557899999999999999999988877643
No 202
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.12 Score=56.98 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=103.2
Q ss_pred cHhHHhHHHHHHh--ccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchh-hhhhhHHHHHHHHH
Q 005266 20 EIGKAVKCLEAIC--QSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF-ELKCRTFSLLSQCY 96 (705)
Q Consensus 20 ~i~~ai~CLea~~--~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~-dlK~~~~~lLA~~y 96 (705)
+..+-+.|.+.+- +.++.|.-..-||.+.+||+|+++. +++.+|-..|...+.=.. ...+ ..|.+.+.+.+++|
T Consensus 111 d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~-g~~~eA~~iL~~l~~Et~--~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 111 DLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEE-GKIDEAADILCELQVETY--GSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp HHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHC--SSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHH
Confidence 4455566665543 2333356666799999999987665 999999999886543222 2233 77888999999999
Q ss_pred HHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCc
Q 005266 97 HLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYP 166 (705)
Q Consensus 97 ~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~ 166 (705)
+..+++..++.+++|+-..... .++++.-.-.|+.+.+.+|..++||..|.+.|..+...-...+++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~---~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~ 254 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFK---NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDE 254 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHCCCHHHHHHHHHHHHHhhcc---cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCH
Confidence 9999999999999986443321 223344456788889999999999999999999988766566665
No 203
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.49 E-value=1.9 Score=50.05 Aligned_cols=175 Identities=10% Similarity=-0.015 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhcCChhHHHHHHHHH--HHHHHhhCChhh----HHHHHHhhcccc---
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAA-FHYVEAAKITESKSMQAMCHAYA--AVSYFCIGDAES----SSQAIDLIGPVY--- 500 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~-~~f~~Al~l~~~~~g~a~a~~nl--alv~l~~gd~d~----~~~ALeli~~~~--- 500 (705)
..+.+-+..+.+....|+.++|. ..|.+|+...+... .+++ +......|+.+. ++++++.+....
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~-----~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~ 415 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA-----VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL 415 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 45788889999999999999997 99999999887654 4454 444444677765 666666431100
Q ss_pred --ccCCccchh---h-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCC-ChHHH
Q 005266 501 --QMKDTINGV---R-EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH-DTVQA 573 (705)
Q Consensus 501 --~~~~~~~g~---~-~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg-~~~qA 573 (705)
..|.+..+. . .-+..|...+....+.|..+.|+..|.+|++.... . ....+...+.+-...| +.+.|
T Consensus 416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~-----~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-V-----TPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-S-----CTHHHHHHHHHHHTTTSCCHHH
T ss_pred hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-C-----ChHHHHHHHHHHHHhCCCHHHH
Confidence 012110000 0 00235665566666789999999999999776211 1 1223444455555654 58999
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 574 REILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 574 ~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
++.|+.++....+.+ ..| ....+.....|+.++|+..|+.+..
T Consensus 490 r~ife~~Lk~~p~~~----~~w--~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 490 CKVLELGLKYFATDG----EYI--NKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHHHHHTTCH----HHH--HHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCch----HHH--HHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999998644322 244 2445677778999999998887654
No 204
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.40 E-value=0.1 Score=55.85 Aligned_cols=249 Identities=9% Similarity=-0.018 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccccchhhhHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 005266 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (705)
Q Consensus 343 ~aL~yll~~~~~~~~g~~~ka~k~l~~al~~i~~~l~~~~~~~~~~e~~l~~~~~w~~~~~~~l~~~~Le~~~~~~L~~~ 422 (705)
.+.-|+-..+. ..+..++|.+.+.+++.. .|. .-.+|.-+-.+. . -|.....-+|..+
T Consensus 55 ~~~~~~r~~~~--~~e~se~AL~lt~~~L~~----------nP~-------~ytaWn~R~~iL-~--~l~~~l~eEL~~~ 112 (349)
T 3q7a_A 55 DAMDYFRAIAA--KEEKSERALELTEIIVRM----------NPA-------HYTVWQYRFSLL-T--SLNKSLEDELRLM 112 (349)
T ss_dssp HHHHHHHHHHH--TTCCSHHHHHHHHHHHHH----------CTT-------CHHHHHHHHHHH-H--HTTCCHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHh----------Cch-------hHHHHHHHHHHH-H--HhhhhHHHHHHHH
Confidence 34444433332 334446888888888875 222 246774332221 0 0111112223344
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChh-----hHHHHHHh
Q 005266 423 GFVEAQEACESMIEMLRGQYAHSV-G-CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE-----SSSQAIDL 495 (705)
Q Consensus 423 ~~~~a~~~~~a~~~~llG~~~~~~-g-~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d-----~~~~ALel 495 (705)
+-+...+|-...+-+-.|.+.... + ++++++..+.+++.+.+.+. .+..++ +.+....|.++ ....+++.
T Consensus 113 ~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy-~AW~~R--~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 113 NEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY-HTWAYL--HWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH-HHHHHH--HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH-HHHHHH--HHHHHHhccccccchhhHHHHHHH
Confidence 444555666678888899999988 8 99999999999998877643 111111 12222222222 12233333
Q ss_pred hcccc-ccCCccchhhhHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC
Q 005266 496 IGPVY-QMKDTINGVREEASLHFAYGLLLMRQQD-------FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL 567 (705)
Q Consensus 496 i~~~~-~~~~~~~g~~~qA~al~~lG~~~~~~g~-------~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l 567 (705)
+.... ..|.+ -.+|+..|.+....++ +++++++..+++.+. -+|. .+.+.+..++.+.
T Consensus 190 ~~k~I~~dp~N-------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~---P~n~----SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 190 CNEMLRVDGRN-------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI---PHNV----SAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHCTTC-------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC---TTCH----HHHHHHHHHHHHT
T ss_pred HHHHHHhCCCC-------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHhc
Confidence 33221 23443 4589999999988887 789999999998873 4452 3677778888887
Q ss_pred CChHH-----------------HHHHHHHHHHHHHHc---CChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Q 005266 568 HDTVQ-----------------AREILRSSLTLAKKL---YDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDEL 627 (705)
Q Consensus 568 g~~~q-----------------A~~~~~~Al~LArk~---gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l 627 (705)
|...- -.+.-+-++.+.... +....-..++..|+++|...|+..+|.+++....++.|-+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 256 SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred CCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 76510 112233333333332 1113456788899999999999999999888876666654
Q ss_pred HHH
Q 005266 628 QKR 630 (705)
Q Consensus 628 ~~~ 630 (705)
.+.
T Consensus 336 r~~ 338 (349)
T 3q7a_A 336 RAG 338 (349)
T ss_dssp GHH
T ss_pred HHH
Confidence 443
No 205
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.32 E-value=0.06 Score=56.14 Aligned_cols=147 Identities=12% Similarity=0.039 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHH-HHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHH---
Q 005266 450 SEAAFHYVEAAKITESKSMQAMCHAYAAVS-YFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR--- 525 (705)
Q Consensus 450 ~eA~~~f~~Al~l~~~~~g~a~a~~nlalv-~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~--- 525 (705)
..|...|.+|.+ -..++.|..+-+.. -++.|+.+..+.+|.-..+ ++ +.++++.|.++..
T Consensus 104 ~RA~~Ly~ra~~----y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~d-------ve~L~W~ai~~ss~a~ 167 (301)
T 3u64_A 104 SRARKLYLRGAR----YALSSLETAYPGFTREVFSGDEQRLHKVLSRCTR-----VD-------VGTLYWVGTGYVAAFA 167 (301)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCG-----GG-------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH----HHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCc-----cc-------cHHHHHHHHHHHHHHh
Confidence 344444444433 22333333333333 3334555557777774444 21 3455555555433
Q ss_pred --hcC------HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC-----CChHHHHHHHHHHHHHHHHcCChhh
Q 005266 526 --QQD------FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL-----HDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 526 --~g~------~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l-----g~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
.|. ..+|+..+++|+++- . + ...+.+++.||.+|... |+.++|+.+|++|+++.-.-
T Consensus 168 ~~~gg~~Al~~l~~A~a~lerAleLD-P---~-~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~----- 237 (301)
T 3u64_A 168 LTPLGSALPDTVHAAVMMLERACDLW-P---S-YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH----- 237 (301)
T ss_dssp TSCTTSCCHHHHHHHHHHHHHHHHHC-T---T-HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-----
T ss_pred cCCCChHHHHhHHHHHHHHHHHHHhC-C---C-cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-----
Confidence 132 356888888888873 1 2 45667999999999994 99999999999999985321
Q ss_pred HHHHHHHHHHHHHH-cCCchHHHHHHHHHHH
Q 005266 593 QIWALSVLTALYQQ-LGDRGNEMENDEYRRK 622 (705)
Q Consensus 593 q~~al~~L~~l~~~-~Gd~~~A~e~~~~~~~ 622 (705)
-+.+....++.+.. .||++.|.+.++.+..
T Consensus 238 ~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 238 DPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 15566778888877 4999998887776654
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.30 E-value=0.011 Score=49.30 Aligned_cols=61 Identities=23% Similarity=0.157 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHH-HHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 517 FAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ-YLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 517 ~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~-aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
+..|..++..|++++|...++++++.. -.+ .. ++..+|.+|...|++++|.+.++.++.+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE---PVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC---SST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC---CCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 556888889999999999999999874 223 24 78899999999999999999999999774
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.88 E-value=0.024 Score=53.96 Aligned_cols=91 Identities=8% Similarity=-0.064 Sum_probs=70.7
Q ss_pred hhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCC----------hhHHHHHHHHHhhccccccccccc
Q 005266 57 HTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAI----------PPQKLILYKALDLTSSASQDVAVK 126 (705)
Q Consensus 57 ~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~----------~~ak~~l~kai~~~~~~~~~~~~~ 126 (705)
...-+++|...+++++.+.+..+ .++..+..++...+.. ..|...+++||++.+. +
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~a-------ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-------~ 79 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDA-------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-------K 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-------C
T ss_pred HHhHHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-------c
Confidence 44557888888999988888877 7888888888888764 4888899999999983 2
Q ss_pred hhhHhHHHHHHHHHhhcC-----------CHHHHHHHHHHHHHHHhhcCCchH
Q 005266 127 LWSCNFNSQLANAFIIEG-----------DYQSSISALQSGYVCATEISYPDL 168 (705)
Q Consensus 127 ~W~~~f~~~lA~~~~~~~-----------d~~~A~~~L~~~~~~A~~~~~~~~ 168 (705)
.- -++.++.+|...| ++..|+..|++.+++ ++...
T Consensus 80 ~~---A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l----~P~~~ 125 (158)
T 1zu2_A 80 DE---AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE----QPDNT 125 (158)
T ss_dssp HH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH----CTTCH
T ss_pred HH---HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh----CCCCH
Confidence 21 2346788888774 899999999998887 55543
No 208
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=95.85 E-value=1.4 Score=46.64 Aligned_cols=159 Identities=10% Similarity=-0.080 Sum_probs=103.7
Q ss_pred hhhhhhHHhhhhhHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCCh-hh----HHH
Q 005266 419 LTRSGFVEAQEACESMIEMLRGQYAHSVGC--YSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA-ES----SSQ 491 (705)
Q Consensus 419 L~~~~~~~a~~~~~a~~~~llG~~~~~~g~--~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~-d~----~~~ 491 (705)
|...+-+...+|-...+-+-.|.+....|+ +++++..+.+++.+.+.+. .+ -.+-+.+....|.+ ++ +.+
T Consensus 94 L~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy-~A--W~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 94 LGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF-HC--WDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH-HH--HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH-HH--HHHHHHHHHHhCcCHHHHHHHHHH
Confidence 334444455666778888899999999994 8999999999999988754 11 11223444445653 33 555
Q ss_pred HHHhhccccccCCccchhhhHHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Q 005266 492 AIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ--------------QDFQEARNRLAKGLQIAHNHMGNLQLVSQYL 557 (705)
Q Consensus 492 ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~--------------g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL 557 (705)
+++ ..|.+ ..+|+..|.+.... +.++++++++.+++.+. -+|. .+.
T Consensus 171 ~I~------~~p~N-------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~---P~d~----SaW 230 (331)
T 3dss_A 171 LIT------RNFSN-------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD---PNDQ----SAW 230 (331)
T ss_dssp HHH------HCSCC-------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS---TTCH----HHH
T ss_pred HHH------HCCCC-------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC---CCCH----HHH
Confidence 555 34443 45788888887776 56899999999999884 3342 255
Q ss_pred HHHHHHHHHC-----------CChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 005266 558 TILGNLALAL-----------HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ 606 (705)
Q Consensus 558 ~~LG~i~~~l-----------g~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~ 606 (705)
+.+..++... +..+++.++++..+.+.- |- .|++..+..+.+.
T Consensus 231 ~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p---d~---~w~l~~~~~~~~~ 284 (331)
T 3dss_A 231 FYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP---EN---KWCLLTIILLMRA 284 (331)
T ss_dssp HHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT---TC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc---cc---chHHHHHHHHHHh
Confidence 5555555554 345677777777776643 32 6777666555443
No 209
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.72 E-value=0.11 Score=49.68 Aligned_cols=104 Identities=13% Similarity=0.004 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh--cccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCCh--
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHN--HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI-- 590 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~--e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~-- 590 (705)
+++-.....+..|-|+.|.-...-.+.+.+. +...+...+++++.+|+.++..|++.+|...|++|+.+-|.+...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4555566677899999999999998888742 233578999999999999999999999999999999999865322
Q ss_pred -----------------hhHHHHHHHHHHHHHHcCCchHHHHHHH
Q 005266 591 -----------------PTQIWALSVLTALYQQLGDRGNEMENDE 618 (705)
Q Consensus 591 -----------------~~q~~al~~L~~l~~~~Gd~~~A~e~~~ 618 (705)
..+...-.-++..|...|++..|....+
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 2233455667888889998888877543
No 210
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.59 E-value=1 Score=48.89 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=108.0
Q ss_pred cHhHHhHHHHHHhccCCCCChHHHHHHHH--HHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHH
Q 005266 20 EIGKAVKCLEAICQSHVSFLPIIEVKTRL--RISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYH 97 (705)
Q Consensus 20 ~i~~ai~CLea~~~~~~~~~p~~EA~~rL--rla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~ 97 (705)
.|..+..|++-+=+.++ .=-|++| |+|.+++ .++++.+|...+.+...-.+.... -....+++.+-+++|+
T Consensus 78 ~~~~~~~~~~~a~~~~r-----~flr~~l~~kL~~l~~-~~~~y~~a~~~i~~l~~~~~~~dd-~~~llev~lle~~~~~ 150 (394)
T 3txn_A 78 EVQLCKDCIEWAKQEKR-----TFLRQSLEARLIALYF-DTALYTEALALGAQLLRELKKLDD-KNLLVEVQLLESKTYH 150 (394)
T ss_dssp HHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTSSC-THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHH
Confidence 56777777777665444 2246666 9999666 899999999999887665555321 2577889999999999
Q ss_pred HcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHhhcCCc-hHHHHHHHH
Q 005266 98 LVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFI-IEGDYQSSISALQSGYVCATEISYP-DLQMFFATA 175 (705)
Q Consensus 98 ~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~-~~~d~~~A~~~L~~~~~~A~~~~~~-~~~~~~~La 175 (705)
..|+.+.+|.++.+|...... -++++.-.-.+...-|-.|+ .++||..|.+.+-....--.+.+++ ...++.-+.
T Consensus 151 ~~~n~~k~k~~l~~a~~~~~a---i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv 227 (394)
T 3txn_A 151 ALSNLPKARAALTSARTTANA---IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML 227 (394)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhhcc---CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 999999999999998776542 13455556777888888999 8999999888877765433444544 344444444
Q ss_pred HHHHHh
Q 005266 176 ILHVHL 181 (705)
Q Consensus 176 ~~~~~L 181 (705)
.+-+..
T Consensus 228 L~aLl~ 233 (394)
T 3txn_A 228 LCKIML 233 (394)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 443333
No 211
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.42 E-value=0.78 Score=47.94 Aligned_cols=161 Identities=9% Similarity=-0.044 Sum_probs=112.1
Q ss_pred hhhhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH--Hhh---CChhh----HHHHHHhh
Q 005266 428 QEACESMIEMLRGQYAHSVG--CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY--FCI---GDAES----SSQAIDLI 496 (705)
Q Consensus 428 ~~~~~a~~~~llG~~~~~~g--~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~--l~~---gd~d~----~~~ALeli 496 (705)
..|....+-+..|.+....| ++++++..+..++...++... +.-.+...+-. ... +++++ +.++++
T Consensus 62 ~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~-aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~-- 138 (306)
T 3dra_A 62 ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ-IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS-- 138 (306)
T ss_dssp HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH-HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH--
T ss_pred HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH-HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH--
Confidence 45666778889999999999 999999999999999887441 11111111100 122 44433 566665
Q ss_pred ccccccCCccchhhhHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCC-----
Q 005266 497 GPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQ--EARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD----- 569 (705)
Q Consensus 497 ~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~--eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~----- 569 (705)
..|.+ ..+|+..|++....|+++ +++.++.+++..- ..|- .+.+.-|.+...+|.
T Consensus 139 ----~~pkn-------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~----sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 139 ----SDPKN-------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNN----SAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp ----HCTTC-------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCH----HHHHHHHHHHHSSGGGCCHH
T ss_pred ----hCCCC-------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHhccccchhh
Confidence 33443 458999999999999999 9999999998872 4452 478888899988887
Q ss_pred -hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHH
Q 005266 570 -TVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEME 615 (705)
Q Consensus 570 -~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e 615 (705)
.+++.++++.++.+ .-+| .-+|. .++-++...|+...+..
T Consensus 201 ~~~eEl~~~~~aI~~--~p~n--~SaW~--y~~~ll~~~~~~~~~~~ 241 (306)
T 3dra_A 201 TIDEELNYVKDKIVK--CPQN--PSTWN--YLLGIHERFDRSITQLE 241 (306)
T ss_dssp HHHHHHHHHHHHHHH--CSSC--HHHHH--HHHHHHHHTTCCGGGGH
T ss_pred hHHHHHHHHHHHHHh--CCCC--ccHHH--HHHHHHHhcCCChHHHH
Confidence 77788888777654 2333 34664 46778888888755443
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.26 E-value=0.041 Score=47.16 Aligned_cols=67 Identities=18% Similarity=0.053 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQD---FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 586 (705)
Q Consensus 513 A~al~~lG~~~~~~g~---~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk 586 (705)
+..++.+|.+++..++ .++|...|++||++- -.| ..++..+|.+++..|++++|.+++++.++....
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---p~~----~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---PYN----EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---cCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6688999999987776 799999999999984 223 258889999999999999999999999876555
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.01 E-value=2.5 Score=44.03 Aligned_cols=69 Identities=7% Similarity=0.058 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQ-----QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL-HDTVQAREILRSSLTLAK 585 (705)
Q Consensus 512 qA~al~~lG~~~~~~-----g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l-g~~~qA~~~~~~Al~LAr 585 (705)
.+.+|.++|..|... |+.+.|..+|++||++. ..+| ..+++..|+.+... |+.++|.+.+++|++.--
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--P~~~----id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--SAHD----PDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--CTTC----SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--CCCC----chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 366999999999884 99999999999999994 2333 25788999999884 999999999999987533
Q ss_pred H
Q 005266 586 K 586 (705)
Q Consensus 586 k 586 (705)
.
T Consensus 272 ~ 272 (301)
T 3u64_A 272 E 272 (301)
T ss_dssp G
T ss_pred C
Confidence 3
No 214
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.95 E-value=0.47 Score=53.05 Aligned_cols=176 Identities=15% Similarity=0.044 Sum_probs=112.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh--cCChhHHHHHHHHHHHHHHh--hCChhh------HHHHHHhhccc---cccCCccc
Q 005266 441 QYAHSVGCYSEAAFHYVEAAKI--TESKSMQAMCHAYAAVSYFC--IGDAES------SSQAIDLIGPV---YQMKDTIN 507 (705)
Q Consensus 441 ~~~~~~g~~~eA~~~f~~Al~l--~~~~~g~a~a~~nlalv~l~--~gd~d~------~~~ALeli~~~---~~~~~~~~ 507 (705)
..+.+.|++++|...|.+..+. .++.. ..| +++..+ .+..++ ..+|++++... +-.|+
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~-----tyn-~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd--- 104 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQY-----HYN-VLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN--- 104 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHH-----HHH-HHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC---
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHh-----HHH-HHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC---
Confidence 4456899999999999986654 22322 122 222222 233211 67788877654 22344
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc
Q 005266 508 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 587 (705)
Q Consensus 508 g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~ 587 (705)
..+|..+-.++...|+.++|.+.+.+-.+. |- .-...+++.|=..|.+.|+.++|.+.++.-.. .
T Consensus 105 -----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~ 169 (501)
T 4g26_A 105 -----EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GI-QPRLRSYGPALFGFCRKGDADKAYEVDAHMVE----S 169 (501)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----T
T ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCccceehHHHHHHHHCCCHHHHHHHHHHHHh----c
Confidence 457888878888999999999999975332 21 11224677777889999999999999987642 2
Q ss_pred CChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhcc
Q 005266 588 YDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHHIELISKVKL 649 (705)
Q Consensus 588 gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~~~~h~~l~~~~~~ 649 (705)
|-.+ -..+++.|=+.|...|+.++|.+.++. +.+....-..+... .|++|.+.
T Consensus 170 G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~-------Mr~~g~~ps~~T~~-~l~~~F~s 222 (501)
T 4g26_A 170 EVVP-EEPELAALLKVSMDTKNADKVYKTLQR-------LRDLVRQVSKSTFD-MIEEWFKS 222 (501)
T ss_dssp TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHH-------HHHHTSSBCHHHHH-HHHHHHHS
T ss_pred CCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHH-------HHHhCCCcCHHHHH-HHHHHHhc
Confidence 3222 245677888999999999999885543 22222233333333 36776554
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.93 E-value=0.11 Score=44.33 Aligned_cols=66 Identities=14% Similarity=-0.011 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhcc
Q 005266 45 KTRLRISTLLLKHTHN--VNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTS 117 (705)
Q Consensus 45 ~~rLrla~iL~e~T~N--~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~ 117 (705)
-....+|.+|+...+. .++|+.+|++|+.+.+..+ .+.++|+..+++.|++..|..+.++.++..+
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~-------rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE-------AALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567789999765554 7999999999999999998 9999999999999999999999999998877
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.89 E-value=0.088 Score=45.45 Aligned_cols=72 Identities=15% Similarity=0.042 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCC-hhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 552 LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD-IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 552 l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD-~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
+.+.-...||..++..|++.+|...++.|+.....-.+ ......++..||.+|...|+.++|.+.++.+.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455678999999999999999999999988765432 1245677789999999999999999988877654
No 217
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.61 E-value=0.14 Score=48.81 Aligned_cols=115 Identities=10% Similarity=-0.032 Sum_probs=82.2
Q ss_pred cchHHHHHHHHHHHHHhhcCCch--hhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhcccc---cc---------ccc
Q 005266 59 HNVNHAKSHLERSQLLLKAIPSC--FELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSA---SQ---------DVA 124 (705)
Q Consensus 59 ~N~~~A~thLeka~~l~~~i~~~--~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~---~~---------~~~ 124 (705)
+-++-|+...+.+..+....+.. .+.||.+...+|+.++..+.+..|..+.++|++.-..- +. .+|
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p 113 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTP 113 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------------
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCc
Confidence 45778888888877777666654 49999999999999999999999999999988766521 00 111
Q ss_pred cchh---hHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 005266 125 VKLW---SCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILH 178 (705)
Q Consensus 125 ~~~W---~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~ 178 (705)
...| ....+|+.|.+|...+++..|+..|+.+-... .-..+..+|+.+|
T Consensus 114 ~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~-----Rt~kvnm~LakLy 165 (167)
T 3ffl_A 114 QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ-----RTPKINMLLANLY 165 (167)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG-----CCHHHHHHHHHHC
T ss_pred ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh-----cCHHHHHHHHHHh
Confidence 1112 34577889999999999999999999865421 2234455566544
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.46 E-value=0.13 Score=48.41 Aligned_cols=93 Identities=11% Similarity=-0.004 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcC
Q 005266 449 YSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD 528 (705)
Q Consensus 449 ~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~ 528 (705)
...++..|.+++...+ . ...+..+.|+.+.+.++++...+++.+++.+.+.- ..-. +..++|++|+.+++.|+
T Consensus 14 l~~~~~~y~~e~~~~~-~--~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~--~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-V--SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEE--QRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHTTC-C--CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHH--HHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHccCC-C--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Cccc--hHHHHHHHHHHHHHccC
Confidence 4556778877766433 2 23457777888777666666778887777764421 0001 35799999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCHH
Q 005266 529 FQEARNRLAKGLQIAHNHMGNLQ 551 (705)
Q Consensus 529 ~~eA~~~L~eAL~la~~e~gn~~ 551 (705)
|++|++++..+|++- -+|+|
T Consensus 87 Y~~A~~y~~~lL~ie---P~n~Q 106 (152)
T 1pc2_A 87 YEKALKYVRGLLQTE---PQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHHHC---TTCHH
T ss_pred HHHHHHHHHHHHhcC---CCCHH
Confidence 999999999999982 45643
No 219
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.12 E-value=0.34 Score=55.07 Aligned_cols=154 Identities=6% Similarity=-0.053 Sum_probs=107.9
Q ss_pred hhhhhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhC--Chhh----HH
Q 005266 427 AQEACESMIEMLRGQYAHSVGC----------YSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG--DAES----SS 490 (705)
Q Consensus 427 a~~~~~a~~~~llG~~~~~~g~----------~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~g--d~d~----~~ 490 (705)
...|....+.+..|.+....|+ +++|+..|.++++..+... ++ -.+=+.+....| ++++ +.
T Consensus 57 ~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y-~a--W~hR~w~l~~l~~~~~~~el~~~~ 133 (567)
T 1dce_A 57 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY-GT--WHHRCWLLSRLPEPNWARELELCA 133 (567)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH-HH--HHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH-HH--HHHHHHHHHHcccccHHHHHHHHH
Confidence 3455667778888999988888 9999999999999988755 11 122244455556 3344 67
Q ss_pred HHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC--
Q 005266 491 QAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ-DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL-- 567 (705)
Q Consensus 491 ~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g-~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l-- 567 (705)
++++ ..|.+ ..+|+..|++....| +++++.+++.++++.. ..|. .+++..|.++..+
T Consensus 134 k~l~------~d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~---p~n~----saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 134 RFLE------ADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNY----SSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHH------HCTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCH----HHHHHHHHHHHHHSC
T ss_pred HHHh------hcccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---CCCc----cHHHHHHHHHHhhcc
Confidence 7766 22332 568999999999999 8999999999998763 4442 4888888888875
Q ss_pred ------------CChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 005266 568 ------------HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGD 609 (705)
Q Consensus 568 ------------g~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd 609 (705)
+.++++.++++.|+.+. -.| ..+|.+ ++-++...|+
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~--P~~--~saW~y--~~~ll~~~~~ 241 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTD--PND--QSAWFY--HRWLLGRAEP 241 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHC--SSC--SHHHHH--HHHHHSCCCC
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhC--CCC--ccHHHH--HHHHHhcCCC
Confidence 44678888888887652 222 345644 5566666555
No 220
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.50 E-value=1.9 Score=48.82 Aligned_cols=130 Identities=6% Similarity=-0.113 Sum_probs=89.7
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhC-ChhhHHHHHHhhccc
Q 005266 423 GFVEAQEACESMIEMLRGQYAHSVG--CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG-DAESSSQAIDLIGPV 499 (705)
Q Consensus 423 ~~~~a~~~~~a~~~~llG~~~~~~g--~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~g-d~d~~~~ALeli~~~ 499 (705)
+-+...+|-...+.+-.|.+....| ++++|+..|.+++++++.+. .|..+-+.+....| .++ .+++.+...
T Consensus 97 ~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~---~aW~~R~~~l~~l~~~~~---~el~~~~~~ 170 (567)
T 1dce_A 97 ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF---HCWDYRRFVAAQAAVAPA---EELAFTDSL 170 (567)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTCCCHH---HHHHHHHTT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc---cHHHHHHHHHHHcCCChH---HHHHHHHHH
Confidence 4444455666888889999999999 77999999999999987754 12222244444555 433 333332222
Q ss_pred c-ccCCccchhhhHHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Q 005266 500 Y-QMKDTINGVREEASLHFAYGLLLMRQ--------------QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLA 564 (705)
Q Consensus 500 ~-~~~~~~~g~~~qA~al~~lG~~~~~~--------------g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~ 564 (705)
. ..|++ ..+|+..|.++... +++++|.+++.+|+.+. -.|. .++..+|+++
T Consensus 171 I~~~p~n-------~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~---P~~~----saW~y~~~ll 236 (567)
T 1dce_A 171 ITRNFSN-------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD---PNDQ----SAWFYHRWLL 236 (567)
T ss_dssp TTTTCCC-------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC---SSCS----HHHHHHHHHH
T ss_pred HHHCCCC-------ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC---CCCc----cHHHHHHHHH
Confidence 1 23443 56899999888774 66899999999999884 2231 3888899999
Q ss_pred HHCCChHH
Q 005266 565 LALHDTVQ 572 (705)
Q Consensus 565 ~~lg~~~q 572 (705)
...+.+++
T Consensus 237 ~~~~~~~~ 244 (567)
T 1dce_A 237 GRAEPHDV 244 (567)
T ss_dssp SCCCCCSC
T ss_pred hcCCCccc
Confidence 99887554
No 221
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.90 E-value=2.2 Score=46.86 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
+..++.-....++..+++..|...+.++...+.....++.+...++..+|.++.+.+++.+|..+|..++.-....+|..
T Consensus 176 kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~ 255 (445)
T 4b4t_P 176 KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEA 255 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHH
Confidence 45677777778889999999999999987666567788999999999999999999999999999999999888888864
No 222
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.43 E-value=3.7 Score=45.98 Aligned_cols=141 Identities=18% Similarity=0.122 Sum_probs=88.7
Q ss_pred ChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 005266 465 SKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 544 (705)
Q Consensus 465 ~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~ 544 (705)
+..+++.....+-..|+..+.+++....+. .. .||........++.++|+.|.++..+++|.+|.++|..|++.+.
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvs---k~-~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFIS---KL-EYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHH---HH-CSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHh---cC-cCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 467888888888888998888776555444 22 35654333333578999999999999999999999999998763
Q ss_pred hc---ccCHHHHHHHHHHHHHHH---------HHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCch
Q 005266 545 NH---MGNLQLVSQYLTILGNLA---------LALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRG 611 (705)
Q Consensus 545 ~e---~gn~~l~a~aL~~LG~i~---------~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~ 611 (705)
.. .|+ +..+.-+..+..+. +..-..+.+..-|.. +.-|=+.||...---++..-.......|.+.
T Consensus 302 ~~~~a~gf-r~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~-Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~ 378 (523)
T 4b4t_S 302 HNSKSLGF-LQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYH-LTKAVKLGDLKKFTSTITKYKQLLLKDDTYQ 378 (523)
T ss_dssp CSSSCSHH-HHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHH-HHHHHHHTCHHHHHHHHHHTHHHHHHTTCTH
T ss_pred cchhhhhH-HHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHhcceeccCChhH
Confidence 11 122 33333233333322 222233444444432 4444567887766666666667777777654
No 223
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=92.29 E-value=20 Score=41.45 Aligned_cols=169 Identities=9% Similarity=0.066 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----------Ch-h-----HHHHHHHHHHHHHH--hhCChhh----
Q 005266 432 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE-----------SK-S-----MQAMCHAYAAVSYF--CIGDAES---- 488 (705)
Q Consensus 432 ~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~-----------~~-~-----g~a~a~~nlalv~l--~~gd~d~---- 488 (705)
...+...++.+....|++++|...|.+++.... .. . ....+.+|+..+.. +.|+.+.
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 355667788999999999999999999997531 10 0 11244566654444 3455444
Q ss_pred HHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC
Q 005266 489 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ-DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL 567 (705)
Q Consensus 489 ~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g-~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l 567 (705)
+.+|+... |.. . ...|...+..-...+ +++.|+..+..+++.+ . .++.+ +...++.....
T Consensus 457 f~~A~~~~------~~~-~-----~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p--~~~~~----w~~y~~fe~~~ 517 (679)
T 4e6h_A 457 FGKCRRLK------KLV-T-----PDIYLENAYIEYHISKDTKTACKVLELGLKYF-A--TDGEY----INKYLDFLIYV 517 (679)
T ss_dssp HHHHHHTG------GGS-C-----THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-T--TCHHH----HHHHHHHHHHH
T ss_pred HHHHHHhc------CCC-C-----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-C--CchHH----HHHHHHHHHhC
Confidence 44544421 110 0 113434444444544 5899999999999996 2 23333 33445566677
Q ss_pred CChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 005266 568 HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 622 (705)
Q Consensus 568 g~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 622 (705)
|+.+.|+..|++|+..... .+....+|.. ..+.-...|+.+.+........+
T Consensus 518 ~~~~~AR~lferal~~~~~-~~~~~~lw~~--~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 518 NEESQVKSLFESSIDKISD-SHLLKMIFQK--VIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp TCHHHHHHHHHHHTTTSSS-TTHHHHHHHH--HHHHHHHTCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCC-HHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999865431 1233445543 45677788998877765555543
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.07 E-value=0.97 Score=42.53 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=73.3
Q ss_pred HHHHHhHHHhhhcccH------hHHhHHHHHHhccCCCCChH------HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 005266 6 EGLWGLADYHENKGEI------GKAVKCLEAICQSHVSFLPI------IEVKTRLRISTLLLKHTHNVNHAKSHLERSQL 73 (705)
Q Consensus 6 ~~L~~lAe~~~~~~~i------~~ai~CLea~~~~~~~~~p~------~EA~~rLrla~iL~e~T~N~~~A~thLeka~~ 73 (705)
+.-|-...-+|+.+++ ..-+.|++-++. +. ||. -=+..=+||| +|++.+|+++|+..+..|+.
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~--Pp~k~~~wrrYI~LWIrYA--~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-AL--PPDKYGQNESFARIQVRFA--ELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HS--CGGGGTTCHHHHHHHHHHH--HHHHHHCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cC--CccccccHHHHHHHHHHHH--HHHHhcCHHHHHHHHHHHHH
Confidence 3345555556655655 777889998884 33 564 3345557777 45788999999999999988
Q ss_pred HhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhcc
Q 005266 74 LLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTS 117 (705)
Q Consensus 74 l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~ 117 (705)
+ ...| -|+-..+ |+.-.+.|+...|+.+|.+|+.+.+
T Consensus 89 ~---hKkF--AKiwi~~--AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 89 N---CKKF--AFVHISF--AQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp H---CTTB--HHHHHHH--HHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred H---hHHH--HHHHHHH--HHHHHHcccHHHHHHHHHHHhccCC
Confidence 6 3334 4444444 9999999999999999999999887
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.42 E-value=1.5 Score=39.79 Aligned_cols=94 Identities=12% Similarity=0.005 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcC
Q 005266 449 YSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD 528 (705)
Q Consensus 449 ~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~ 528 (705)
...+...|..+..... ++ ..+..+.|+.+.+...+....+++.++..+++.. ..-. +=.++|.+|+.+++.|+
T Consensus 17 l~~~~~~y~~e~~~~~-~s--~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~--~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VS--KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEE--QRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CC--HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHH--HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCC-Cc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Ccch--HHHHHHHHHHHHHHhhh
Confidence 3455677777665422 22 2347777787777666777888888888875531 1101 33589999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCHHH
Q 005266 529 FQEARNRLAKGLQIAHNHMGNLQL 552 (705)
Q Consensus 529 ~~eA~~~L~eAL~la~~e~gn~~l 552 (705)
|++|++++...|++ +-+|+|-
T Consensus 90 Y~~A~~~~~~lL~~---eP~n~QA 110 (126)
T 1nzn_A 90 YEKALKYVRGLLQT---EPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHH
T ss_pred HHHHHHHHHHHHHh---CCCCHHH
Confidence 99999999999988 2567654
No 226
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=90.88 E-value=18 Score=38.06 Aligned_cols=155 Identities=7% Similarity=-0.041 Sum_probs=97.8
Q ss_pred hhhhhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCC--hhh----HH
Q 005266 427 AQEACESMIEMLRGQYAHSVGC----------YSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD--AES----SS 490 (705)
Q Consensus 427 a~~~~~a~~~~llG~~~~~~g~----------~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd--~d~----~~ 490 (705)
...|....+-+..|.+....|. +++++..+..++...+... .+..++ +.+....|+ +++ +.
T Consensus 58 ~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny-~aW~hR--~wlL~~l~~~~~~~EL~~~~ 134 (331)
T 3dss_A 58 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY-GTWHHR--CWLLSRLPEPNWARELELCA 134 (331)
T ss_dssp TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHH--HHHHHHCSSCCHHHHHHHHH
T ss_pred HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH-HHHHHH--HHHHhccCcccHHHHHHHHH
Confidence 3444455566666666666555 7899999999999888754 111111 333334453 333 56
Q ss_pred HHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC--
Q 005266 491 QAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD-FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL-- 567 (705)
Q Consensus 491 ~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~-~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l-- 567 (705)
++++ ..|.+ ..+|+..|++....|+ +++++.++.+++... ..|. .+.+..|.+...+
T Consensus 135 k~l~------~dprN-------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~---p~N~----SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 135 RFLE------ADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNY----SSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHH------HCTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---SCCH----HHHHHHHHHHHHHSC
T ss_pred HHHH------hCCCC-------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---CCCH----HHHHHHHHHHHHhhh
Confidence 6666 23333 4589999999999998 699999999999873 4552 4777788877776
Q ss_pred ------------CChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q 005266 568 ------------HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGD 609 (705)
Q Consensus 568 ------------g~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd 609 (705)
+..+++.+++..++.+. -+| .-+|.+.. +-+....|.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d--~SaW~Y~r-~ll~~~~~~ 243 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTD--PND--QSAWFYHR-WLLGAGSGR 243 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHS--TTC--HHHHHHHH-HHHHSSSCG
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhC--CCC--HHHHHHHH-HHHHhccCc
Confidence 34667777777776542 233 35665432 334444453
No 227
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=90.79 E-value=3.4 Score=43.95 Aligned_cols=154 Identities=11% Similarity=-0.028 Sum_probs=103.0
Q ss_pred hhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhh-C-Chhh----HHHHHHhhcccc
Q 005266 428 QEACESMIEMLRGQYAHSVG-CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI-G-DAES----SSQAIDLIGPVY 500 (705)
Q Consensus 428 ~~~~~a~~~~llG~~~~~~g-~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~-g-d~d~----~~~ALeli~~~~ 500 (705)
.+|....+-+..|.+....| .+++++..+..++...+... .+.-.+ +.+.... + ++++ +.++++
T Consensus 83 ~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny-~aW~hR--~wlL~~l~~~~~~~EL~~~~k~L~------ 153 (349)
T 3q7a_A 83 MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY-QVWHHR--LLLLDRISPQDPVSEIEYIHGSLL------ 153 (349)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH-HHHHHH--HHHHHHHCCSCCHHHHHHHHHHTS------
T ss_pred hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH-HHHHHH--HHHHHHhcCCChHHHHHHHHHHHH------
Confidence 35556677788999999999 59999999999999988754 111122 2233333 4 4433 444443
Q ss_pred ccCCccchhhhHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCC---
Q 005266 501 QMKDTINGVREEASLHFAYGLLLMRQQDFQ--------EARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD--- 569 (705)
Q Consensus 501 ~~~~~~~g~~~qA~al~~lG~~~~~~g~~~--------eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~--- 569 (705)
..|.+ -.+|+..+++....|+++ +++.++.++++.- ..|- .+.+..|.+...++.
T Consensus 154 ~dpkN-------y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d---p~N~----SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 154 PDPKN-------YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD---GRNN----SAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp SCTTC-------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---TTCH----HHHHHHHHHHTTSTTCCC
T ss_pred hCCCC-------HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHhcccccc
Confidence 23443 458999999998888888 9999999998873 4452 488889999999886
Q ss_pred ----hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCc
Q 005266 570 ----TVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDR 610 (705)
Q Consensus 570 ----~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~Gd~ 610 (705)
.+++.++++.++.+ .-+| .-+|.. +.-++...|+.
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P~n--~SaW~Y--lr~Ll~~~~~~ 258 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IPHN--VSAWNY--LRGFLKHFSLP 258 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTC--HHHHHH--HHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHh--CCCC--HHHHHH--HHHHHHhcCCC
Confidence 46666666666543 2233 345543 45566666664
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=90.22 E-value=1.1 Score=42.22 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQ---DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 513 A~al~~lG~~~~~~g---~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
..+.|.+|+++.+.+ +..+++..|++.++.. ++...-.++..||-.|.++|++++|.++++.++++
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 458899999999988 5669999999887652 23333467888999999999999999999999866
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.39 E-value=1.2 Score=40.80 Aligned_cols=74 Identities=8% Similarity=0.105 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCH
Q 005266 471 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 550 (705)
Q Consensus 471 ~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~ 550 (705)
.+..|.|+..++..+.+...+++.++..+++.... . +=.++|.+|+.+.+.|+|++|+++....|++ +-+|+
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~---~--~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~---eP~N~ 112 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---R--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG---G--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CTTCH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc---h--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---CCCCH
Confidence 34666666666655666677788877776542111 1 3468999999999999999999999999887 25676
Q ss_pred HH
Q 005266 551 QL 552 (705)
Q Consensus 551 ~l 552 (705)
|.
T Consensus 113 QA 114 (134)
T 3o48_A 113 QV 114 (134)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 230
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.29 E-value=2.2 Score=46.61 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhH
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 512 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~q 512 (705)
..++.-+|.++...|++++|...|.+...-+.+ +++ +
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-------------------------------------~~~------k 167 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-------------------------------------TGA------K 167 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-------------------------------------CCS------H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------------------------------------hHH------H
Confidence 446778888888888888888888775433211 111 3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
...++..--+.+..+++..+..++.++..+. ...+++.........-|-++...+++..|...|-.++.-.
T Consensus 168 id~~l~~irl~l~~~d~~~~~~~~~ka~~~~-~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 168 IDVMLTIARLGFFYNDQLYVKEKLEAVNSMI-EKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-hcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 4456666667778899999999999998887 5688888888888888999999999999999888876443
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.10 E-value=1.4 Score=40.83 Aligned_cols=73 Identities=8% Similarity=0.094 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHhhcccccc-CCccchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCH
Q 005266 472 CHAYAAVSYFCIGDAESSSQAIDLIGPVYQM-KDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 550 (705)
Q Consensus 472 a~~nlalv~l~~gd~d~~~~ALeli~~~~~~-~~~~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~ 550 (705)
+..|.|+..+...+.+...+++.++..+++. |.+ +=.++|.+|+.+++.|+|++|++++...|++ +-+|+
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~---eP~n~ 111 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNNK 111 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---CCCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCCcH
Confidence 4666666666655666677788887777553 221 3458999999999999999999999999888 36776
Q ss_pred HHH
Q 005266 551 QLV 553 (705)
Q Consensus 551 ~l~ 553 (705)
|..
T Consensus 112 QA~ 114 (144)
T 1y8m_A 112 QVG 114 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 232
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.31 E-value=13 Score=42.48 Aligned_cols=114 Identities=11% Similarity=-0.073 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~ 510 (705)
.+...-..+|.++...|+++.|+.+|.++- + .-.+..+|...|+.+...++.++.... ++
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~----d-------~~~l~~l~~~~~~~~~~~~~~~~a~~~----~~----- 738 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAH----D-------LESLFLLHSSFNNKEGLVTLAKDAETT----GK----- 738 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT----C-------HHHHHHHHHHTTCHHHHHHHHHHHHHT----TC-----
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc----C-------hhhhHHHHHHcCCHHHHHHHHHHHHHc----Cc-----
Confidence 457778899999999999999999998742 2 223455566677776644443322221 11
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHH------HHHHHHHhcccCHH-HHHHHHHHHHHHHHHCCCh
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLA------KGLQIAHNHMGNLQ-LVSQYLTILGNLALALHDT 570 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~------eAL~la~~e~gn~~-l~a~aL~~LG~i~~~lg~~ 570 (705)
+..-..+++..|++++|.+.+. +|+.+|+ ..+..+ +....+...+.-....|+.
T Consensus 739 -----~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~-~~~~~~~~i~~~~~~~~~~L~~~~~~ 799 (814)
T 3mkq_A 739 -----FNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGS-TYGLGDNEVNDIVTKWKENLILNGKN 799 (814)
T ss_dssp -----HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHTTTCH
T ss_pred -----hHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhccch
Confidence 1111223456899999988774 5666663 344433 1333444444444444443
No 233
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.75 E-value=2.6 Score=46.00 Aligned_cols=59 Identities=15% Similarity=0.297 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHhhhccchhccchhhHHHhhhcccccccccCCccc
Q 005266 619 YRRKKLDELQKRLADAYSSIHHIELISKVKLEVQQFHELDIKRAMANQSMSVNLDIPESI 678 (705)
Q Consensus 619 ~~~~~~~~l~~~~~~a~~~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (705)
...++.+.....+.+.|+++.=..+=+...+++..+- -...+-.......+.+|=|..|
T Consensus 329 l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E-~~L~~lI~~g~l~akID~~~gi 387 (429)
T 4b4t_R 329 FVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLD-NDLGKFIPNKQLNCVIDRVNGI 387 (429)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHH-HHHHHHHHHTSSCEEEETTTTE
T ss_pred HHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHH-HHHHHHHHcCCeEEEEcCCCCE
Confidence 3344444455556666666666666666666665553 2333444555677777777655
No 234
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=85.61 E-value=35 Score=37.74 Aligned_cols=98 Identities=9% Similarity=-0.070 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhh
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKI--TESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l--~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~ 510 (705)
..+.+.+=..+...|++++|...|.+-.+. .++.. +...+-..|...|+.+...+.++.+...+-.|+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~----tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd------ 174 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR----SYGPALFGFCRKGDADKAYEVDAHMVESEVVPE------ 174 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc----eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC------
Confidence 445566667788899999999999985543 23322 222233344556886665555554444444455
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 542 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~l 542 (705)
...|..+-.++...|+.++|.+.|++=-..
T Consensus 175 --~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 175 --EPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 457777777889999999999999975433
No 235
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=84.18 E-value=33 Score=37.72 Aligned_cols=165 Identities=9% Similarity=-0.030 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhh-HHHHHHhhccccccCCcc-chhh
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDTI-NGVR 510 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~-~~~ALeli~~~~~~~~~~-~g~~ 510 (705)
+.+-+..+.+....|+.++|...|.+|++. +... .++++..... +.++ +....+........++.. .+.
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-----~l~~~y~~~~--e~~~~~~~l~~~~~~~~~~~~~~~~~~- 283 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-----FLSLYYGLVM--DEEAVYGDLKRKYSMGEAESAEKVFSK- 283 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-----HHHHHHHHHT--TCTHHHHHHHHHTC----------CHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-----HHHHHHHhhc--chhHHHHHHHHHHHhhccchhhhhccc-
Confidence 555566777888899999999999999999 7644 3333322221 1111 222221110000000000 000
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHHHHcCC
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH-DTVQAREILRSSLTLAKKLYD 589 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg-~~~qA~~~~~~Al~LArk~gD 589 (705)
.-...|...+....+.+..+.|+..+.+| +. . .. +...+...+.+-+..| +.+.|++.++.|+... ++
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~-~~----~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~---~~ 352 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--E-GV----GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH---PD 352 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--S-CC----CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC---TT
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--C-CC----ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---CC
Confidence 00234555555555788899999999988 32 1 11 2233443444444444 6999999999999753 44
Q ss_pred hhhHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 005266 590 IPTQIWALSVLTALYQQLGDRGNEMENDEYR 620 (705)
Q Consensus 590 ~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 620 (705)
.+. .|.. ..+.....|+.++|+..++..
T Consensus 353 ~~~-~~~~--yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 353 STL-LKEE--FFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp CHH-HHHH--HHHHHHHHTCHHHHHHHHHHS
T ss_pred CHH-HHHH--HHHHHHHcCCHHHHHHHHHHH
Confidence 432 3332 456777889999998877775
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=76.48 E-value=31 Score=32.99 Aligned_cols=84 Identities=19% Similarity=0.096 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhh
Q 005266 431 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 431 ~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~ 510 (705)
.....-.-+|..++..|+++=|+.+|.++ ++ .-.+.++|...|+.+.+..-.++-... |
T Consensus 32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~----~D-------~~~L~~Ly~~tg~~e~L~kla~iA~~~----g------ 90 (177)
T 3mkq_B 32 NDSITWERLIQEALAQGNASLAEMIYQTQ----HS-------FDKLSFLYLVTGDVNKLSKMQNIAQTR----E------ 90 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHT----TC-------HHHHHHHHHHHTCHHHHHHHHHHHHHT----T------
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHh----CC-------HHHHHHHHHHhCCHHHHHHHHHHHHHC----c------
Confidence 34667789999999999999999999873 22 334567777789877744432221111 1
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKG 539 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eA 539 (705)
-++....+++..|+++++.+.|.++
T Consensus 91 ----~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 91 ----DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ----cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 1333344567889999999988644
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=73.94 E-value=18 Score=42.44 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHH
Q 005266 88 TFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQS 155 (705)
Q Consensus 88 ~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~ 155 (705)
+...=|+.+...|+.+-|...+++|+..++.+ ...| +.||++|...|||+.|+-+|..
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse-----F~tW-----~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDS-----FESW-----YNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-----HHHH-----HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchh-----hHHH-----HHHHHHHHHhccHHHHHHHHhc
Confidence 44444666667788899999999999999852 3466 5679999999999999875544
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.53 E-value=51 Score=40.33 Aligned_cols=120 Identities=10% Similarity=-0.057 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhh
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 511 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~-~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~ 511 (705)
+...+++|.++...|++++|..+|++|..-... .. ..........+.... +. ..+.
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~-----------------l~~~~~~~~~~~~~~---~~-~~~l-- 898 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS-----------------QFAVLREFQEIAEKY---HH-QNLL-- 898 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCC-----------------SCSSHHHHHHHHHTT---TS-CCSS--
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccch-----------------hhhhhcccccccccc---cc-cccH--
Confidence 445699999999999999999999987643211 11 000011111111111 11 1112
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILR 578 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~ 578 (705)
+.+|+-........|.++.+.+.-+.|++.+ ..++..+....+..+=..++.+|++++|...+.
T Consensus 899 -~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~--~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 899 -SCYYLHLSKKLFEESAYIDALEFSLLADASK--ETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp -HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC--CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 4455555566667788999999999999885 356777777777888888999999999887664
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=69.26 E-value=52 Score=37.43 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKG 539 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eA 539 (705)
..|-.+|..+..+++++.|.+.|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 47888999999999999999999864
No 240
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=67.73 E-value=47 Score=31.88 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=70.0
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccc-cccc------
Q 005266 50 ISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSS-ASQD------ 122 (705)
Q Consensus 50 la~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~-~~~~------ 122 (705)
+-+|.+.+|+.+.++.+||. ..++|.-+=|. +-||.+.++...|..-+.+-++.... |++.
T Consensus 38 L~~I~LyyngEY~R~Lf~L~-------~lNT~Ts~YYk-----~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ 105 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLH-------KLNTCTSKYYE-----SLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE 105 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-------TCCBHHHHHHH-----HHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred hhhhhhhhcchHhHHHHHHH-------hcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence 34678889999999999999 55667644333 67999999998888788887754442 2111
Q ss_pred ----cccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 005266 123 ----VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (705)
Q Consensus 123 ----~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~ 159 (705)
..+..+ |...+|.+....|+-.+|+..+......
T Consensus 106 ffvd~~DkEf---Fy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 106 MFVDPGDEEF---FESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TSCCTTCHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeeccchHHH---HHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 022345 8888999999999999999988775543
No 241
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=66.78 E-value=12 Score=35.36 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHH--HHHHHH-HHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ--LVSQYL-TILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~--l~a~aL-~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
--+..|..++..|+|=+|-+.|++.=+-+ ...++.+ +.+.+. ...|-.|++.|+..-|..++.+|+...++....+
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~-~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~ 112 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNY-GRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDY 112 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTT-CSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTG
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCcc
Confidence 34667888999999999999999876553 1111123 444444 4567778888999999999999999877776544
No 242
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=66.11 E-value=20 Score=39.46 Aligned_cols=100 Identities=12% Similarity=0.137 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHhhcC--Cchh----hhhhhHHHH---HHHHHHHcCCChhHHHHHHHHHhhccc--cccccccchhh
Q 005266 61 VNHAKSHLERSQLLLKAI--PSCF----ELKCRTFSL---LSQCYHLVGAIPPQKLILYKALDLTSS--ASQDVAVKLWS 129 (705)
Q Consensus 61 ~~~A~thLeka~~l~~~i--~~~~----dlK~~~~~l---LA~~y~~~~~~~~ak~~l~kai~~~~~--~~~~~~~~~W~ 129 (705)
.++|-..+.|+..+..+- +... +=|-.++++ |.++|++.|+...+++++ |+++...- .-+.+|... .
T Consensus 142 le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~-k~i~~~~~~p~~~~~p~~q-~ 219 (455)
T 3t5v_B 142 LSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIF-KNFQPKSMLAHFNEYQLDQ-Q 219 (455)
T ss_dssp HHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHH-HTHHHHCCCSCGGGSCHHH-H
T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHH-HHhccCCCCcChhhCCccc-e
Confidence 455555566665543221 1111 234445544 679999999999999866 55776532 245566666 4
Q ss_pred HhHHHHHHHHHhhcCCHHHHHHHHHHHHHH-Hhh
Q 005266 130 CNFNSQLANAFIIEGDYQSSISALQSGYVC-ATE 162 (705)
Q Consensus 130 ~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~-A~~ 162 (705)
..|++-+|.+++.++||..|.+.|....+. +..
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 677778899999999999999999998887 643
No 243
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.78 E-value=60 Score=34.67 Aligned_cols=109 Identities=12% Similarity=0.059 Sum_probs=71.9
Q ss_pred HHHHHH---HHHhhcchHHHHHHHHHHHHHhhcC----------CchhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHh
Q 005266 48 LRISTL---LLKHTHNVNHAKSHLERSQLLLKAI----------PSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALD 114 (705)
Q Consensus 48 Lrla~i---L~e~T~N~~~A~thLeka~~l~~~i----------~~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~ 114 (705)
|+++.+ ..+...+.++|.++|++.......+ ....+-..-....++++|...|+...++..++++-.
T Consensus 76 L~lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~ 155 (393)
T 4b4t_O 76 LSVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEK 155 (393)
T ss_dssp HHHHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344444 4567788999999998753322111 122344455667789999999999999999999654
Q ss_pred hccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005266 115 LTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYV 158 (705)
Q Consensus 115 ~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~ 158 (705)
.-.. .++ .++.=++.|+...+..|...++|..+....-.-..
T Consensus 156 ~l~~-~~~-~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 156 TLDK-KDS-IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHH-SCC-SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhc-cCC-ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4321 111 12334778888889999999999876665444333
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=65.37 E-value=32 Score=30.98 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQE---ARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~e---A~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
..+-|.+|+++.+.++..+ +...|++-++ .+++...=.++..||-.|+++|++..|.++++..|+.
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-----~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-----KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-----TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4578888999999888877 6777775433 2333333357888888899999999999999988765
No 245
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=64.11 E-value=17 Score=31.07 Aligned_cols=72 Identities=17% Similarity=-0.045 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChh
Q 005266 517 FAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 591 (705)
Q Consensus 517 ~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~ 591 (705)
+..|..++..|+|=+|-+.|++.=+-. ...-..-+.+.+....|-.+++.|+. |..++.+|+..-++.++.+
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~-~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~~~ 76 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKA-TGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPCPL 76 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCSSB
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCCcc
Confidence 345677888999999999999887664 22222235566666677778788998 9999999999888777654
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=62.84 E-value=66 Score=34.15 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=66.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcc------cCH----------HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 520 GLLLMRQQDFQEARNRLAKGLQIAHNHM------GNL----------QLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 520 G~~~~~~g~~~eA~~~L~eAL~la~~e~------gn~----------~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
|......|+..+|...|++|+.+.+ .. +.. ..--.++..+.+.++..|++.++...+...+..
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~r-G~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~ 200 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWR-GPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCC-SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3334456788888888888888762 21 010 112245667888999999999999888877543
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 584 AKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 584 Ark~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
.-....+| ..|=.++...|+..+|.+.|+...+..
T Consensus 201 ----~P~~E~~~--~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 201 ----HPYREPLW--TQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp ----STTCHHHH--HHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11122344 445578889999999999998887754
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=61.58 E-value=96 Score=29.06 Aligned_cols=89 Identities=11% Similarity=0.028 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhhcCCchh-------hhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccchhhHhHHH
Q 005266 62 NHAKSHLERSQLLLKAIPSCF-------ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNS 134 (705)
Q Consensus 62 ~~A~thLeka~~l~~~i~~~~-------dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~ 134 (705)
++-+..++||..-+|.-.... =++|..+ ...++++.++.+-+.++..+. .+ -.++.
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-------~ei~D~d~aR~vy~~a~~~hK----kF------AKiwi 98 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-------KAIQEPDDARDYFQMARANCK----KF------AFVHI 98 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-------HHHHCGGGCHHHHHHHHHHCT----TB------HHHHH
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-------HHhcCHHHHHHHHHHHHHHhH----HH------HHHHH
Confidence 677788888877554432111 2333322 334788999999999988632 32 33556
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHH
Q 005266 135 QLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMF 171 (705)
Q Consensus 135 ~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~ 171 (705)
..|++-..+|+..+|..+|..+..+ ++...+++
T Consensus 99 ~~AqFEiRqgnl~kARkILg~AiG~----~~k~~~~l 131 (161)
T 4h7y_A 99 SFAQFELSQGNVKKSKQLLQKAVER----GAVPLEML 131 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT----TCBCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc----CCCcHHHH
Confidence 7799999999999999999998886 66555544
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=58.80 E-value=1.1e+02 Score=35.92 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=47.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccCChhHHHHHHHHh
Q 005266 135 QLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQC 197 (705)
Q Consensus 135 ~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~~~~~v~~al~~~ 197 (705)
.=|+.+...|||.-|+..-++.+.+ -+..-..-+.|+++|+.+ ++++.+.=+||.|
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~----aPseF~tW~~La~vYi~l---~d~e~ALLtLNSc 397 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTEL----ALDSFESWYNLARCHIKK---EEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHT---TCHHHHHHHHHHS
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhc----CchhhHHHHHHHHHHHHh---ccHHHHHHHHhcC
Confidence 3466777889999999977776665 788999999999999999 8899999999988
No 249
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=57.99 E-value=2.2e+02 Score=31.15 Aligned_cols=100 Identities=9% Similarity=0.046 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHhcCC-------------hhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccC-CccchhhhH
Q 005266 447 GCYSEAAFHYVEAAKITES-------------KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMK-DTINGVREE 512 (705)
Q Consensus 447 g~~~eA~~~f~~Al~l~~~-------------~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~-~~~~g~~~q 512 (705)
...++|.....++....-+ +.|.-....++--+|...|..+-+...+.-+......| -+......+
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 3556677777777665211 11222334444577778888766544444443321111 112222336
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHhc
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQI-AHNH 546 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~l-a~~e 546 (705)
+.++|.+|..++.+++|.+|.++|.+|++. +...
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 789999999999999999999999999999 8643
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=54.51 E-value=53 Score=34.92 Aligned_cols=147 Identities=12% Similarity=0.028 Sum_probs=95.4
Q ss_pred hhHHHHHHHhHHHhhhcccHhHHhHHHHHHhccCC--------------CC--Ch-HH---HHHHHHHHHHHHHHhhcch
Q 005266 2 EAVAEGLWGLADYHENKGEIGKAVKCLEAICQSHV--------------SF--LP-II---EVKTRLRISTLLLKHTHNV 61 (705)
Q Consensus 2 ~~~~~~L~~lAe~~~~~~~i~~ai~CLea~~~~~~--------------~~--~p-~~---EA~~rLrla~iL~e~T~N~ 61 (705)
+.++..||+=...-...+.+.+.|.-|...+.... .| +| .+ +-...++-|.-. ...++.
T Consensus 53 ~~L~~~lW~~~~~~~a~~~L~~~i~rLRk~L~~~~~~~~~i~~~~~~GY~l~~~~~~~D~~~f~~l~~~~~~~-~~~~~~ 131 (388)
T 2ff4_A 53 DALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHA-AAAGRF 131 (388)
T ss_dssp HHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHGGGTSCHHHHEEECSSEEEECCCGGGBHHHHHHHHHHHHHHH-HHTTCH
T ss_pred HHHHHHhCCCCCChhHHHHHHHHHHHHHHhhcccCCCCceEEEEECCEEEEcCCCccchHHHHHHHHHHHHHH-HhCCCH
Confidence 46788888743321233577777777777664211 11 12 11 111112222211 124577
Q ss_pred HHHHHHHHHHHHHhhcCC---------------chhhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHhhccccccccccc
Q 005266 62 NHAKSHLERSQLLLKAIP---------------SCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVK 126 (705)
Q Consensus 62 ~~A~thLeka~~l~~~i~---------------~~~dlK~~~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~~~~~~~~ 126 (705)
+.|...|++|+.+-++-. .+.++...+...+++.+...|....+...+.+.+..++ ..
T Consensus 132 ~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-------~~ 204 (388)
T 2ff4_A 132 EQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP-------YR 204 (388)
T ss_dssp HHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TC
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CC
Confidence 888899999987765531 13356667777899999999999999888999888776 33
Q ss_pred hhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 005266 127 LWSCNFNSQLANAFIIEGDYQSSISALQSGYVC 159 (705)
Q Consensus 127 ~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~ 159 (705)
.. ++.++..++...|+...|++.|+...+.
T Consensus 205 E~---~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 205 EP---LWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HH---HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 43 5566777789999999999999998763
No 251
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.38 E-value=37 Score=40.81 Aligned_cols=108 Identities=8% Similarity=-0.080 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHhhCChhh-HHHHHHhhccccccCCccchhh
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE-SKSMQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGVR 510 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~-~~~g~a~a~~nlalv~l~~gd~d~-~~~ALeli~~~~~~~~~~~g~~ 510 (705)
+..-|++|..+...|++++|..+|++|..-.. ... ....+. ....+. +.. ++ ...
T Consensus 840 ~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~---------------~~~~~~~~~~ll~---~~e--~~--~~~- 896 (950)
T 4gq2_M 840 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS---------------QFAVLREFQEIAE---KYH--HQ--NLL- 896 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCC---------------SCGGGHHHHHHHH---HTT--TC--SHH-
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcc---------------cccchhhhhhccC---ccc--cc--chh-
Confidence 45569999999999999999999999764321 111 001111 222222 210 01 111
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHC
Q 005266 511 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL 567 (705)
Q Consensus 511 ~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~l 567 (705)
+.+|+-.....-..+-++-+.+..+-|++.+ ...++.+....++.+=..+.+.
T Consensus 897 --~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~--~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 897 --SCYYLHLSKKLFEESAYIDALEFSLLADASK--ETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CSCCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--ccCCccchHHHHHHHHHHHhhC
Confidence 3355555666667788999999999999986 3678888887776665544443
No 252
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=53.35 E-value=1.1e+02 Score=29.02 Aligned_cols=86 Identities=9% Similarity=-0.118 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhh
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 592 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~ 592 (705)
-..|..+|...+.+|+++=|.++|+++ +|-.. +.-+|...|+.+.=. .-..+|..-||...
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~--------~D~~~-------L~~Ly~~tg~~e~L~----kla~iA~~~g~~n~ 94 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ--------HSFDK-------LSFLYLVTGDVNKLS----KMQNIAQTREDFGS 94 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT--------TCHHH-------HHHHHHHHTCHHHHH----HHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh--------CCHHH-------HHHHHHHhCCHHHHH----HHHHHHHHCccHHH
Confidence 347999999999999999999998844 34333 223445556664333 33456666777644
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 005266 593 QIWALSVLTALYQQLGDRGNEMENDEYRRKKL 624 (705)
Q Consensus 593 q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 624 (705)
...++. -.||.+++.+.+....+..
T Consensus 95 af~~~l-------~lGdv~~~i~lL~~~~r~~ 119 (177)
T 3mkq_B 95 MLLNTF-------YNNSTKERSSIFAEGGSLP 119 (177)
T ss_dssp HHHHHH-------HHTCHHHHHHHHHHTTCHH
T ss_pred HHHHHH-------HcCCHHHHHHHHHHCCChH
Confidence 444333 3466666666554444333
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=52.60 E-value=84 Score=28.97 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQE---ARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~e---A~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
..+-|.+++++.+..+..+ +...|++-++. ....+- .++..|+-.|+++|++..|+++++..|..
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~----~~~~~R--dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----AESRRR--ECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH----CCSTHH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----Cccchh--HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4577888888888887664 66666665442 222234 36777777899999999999999988754
No 254
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=48.41 E-value=41 Score=32.64 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHHHHhhCCh
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESK--SMQAMCHAYAAVSYFCIGDA 486 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~--~g~a~a~~nlalv~l~~gd~ 486 (705)
=+|.+|.+++..++|.+|..+|..|.+..+.. .-+..++..+-.+.+..|+.
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 45789999999999999999999999987653 33445566666666667874
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=47.74 E-value=2.5e+02 Score=28.98 Aligned_cols=44 Identities=2% Similarity=-0.150 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCC-hhhHHHHHHHHHHHHHHcCCchHHHHHHH
Q 005266 575 EILRSSLTLAKKLYD-IPTQIWALSVLTALYQQLGDRGNEMENDE 618 (705)
Q Consensus 575 ~~~~~Al~LArk~gD-~~~q~~al~~L~~l~~~~Gd~~~A~e~~~ 618 (705)
+..+.|+.|+.+.|+ ..|--.-+..+|..|...|++.+|..++-
T Consensus 114 ~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 114 DVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 445555566655544 33333444555556666666655555554
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.22 E-value=33 Score=38.38 Aligned_cols=71 Identities=15% Similarity=0.114 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 584 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA 584 (705)
||..++.+=-.|+..+.|++|..+..++---- ...+| ...+.++..+|-++...+++.+|.+++..|+..+
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~-~~~sn-~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPH-TDVSS-SLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCT-TTSCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCc-ccCCH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 68888888888999999999999999884221 12345 4457899999999999999999999999988654
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=45.88 E-value=2.2e+02 Score=34.11 Aligned_cols=168 Identities=6% Similarity=-0.050 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----C---hhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCc
Q 005266 433 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE----S---KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDT 505 (705)
Q Consensus 433 a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~----~---~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~ 505 (705)
+-+.+.+|.++...++ ++......-+.-.. + ...+..+.+.+|+++.=.++.+-++..+..+.. .+.
T Consensus 413 ~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~d----d~~ 486 (963)
T 4ady_A 413 GGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYN----DSA 486 (963)
T ss_dssp HHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHT----CCH
T ss_pred HHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc----CCH
Confidence 3445577777777764 56666666554332 1 223344666777777644443323333332221 111
Q ss_pred cchhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 005266 506 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 585 (705)
Q Consensus 506 ~~g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LAr 585 (705)
.. ...+-+.+|.++.-+|+.+.....++.+.. ..+..+.-.+-.-||-+ ..|+.+++... +....
T Consensus 487 --~~--~~~AalALGli~vGTgn~~ai~~LL~~~~e-----~~~e~vrR~aalgLGll--~~g~~e~~~~l----i~~L~ 551 (963)
T 4ady_A 487 --TS--GEAAALGMGLCMLGTGKPEAIHDMFTYSQE-----TQHGNITRGLAVGLALI--NYGRQELADDL----ITKML 551 (963)
T ss_dssp --HH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHH--TTTCGGGGHHH----HHHHH
T ss_pred --HH--HHHHHHHHhhhhcccCCHHHHHHHHHHHhc-----cCcHHHHHHHHHHHHhh--hCCChHHHHHH----HHHHH
Confidence 11 123556677777777777666666665432 22222222233334433 45566554433 34445
Q ss_pred HcCChhhHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005266 586 KLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 621 (705)
Q Consensus 586 k~gD~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 621 (705)
...|....--+-..+|-.|..+|+...-....+...
T Consensus 552 ~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 552 ASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 567777777777778888888888765554554443
No 258
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=44.51 E-value=48 Score=32.11 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCC
Q 005266 512 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD 569 (705)
Q Consensus 512 qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~ 569 (705)
++.++|.+|..++.+++|.+|.++|.+|++.+. +.+..+.. .+|..|=.+-+-+|+
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~-~~~~~~k~-~IL~yLIp~~Ll~G~ 68 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCH-RSSQKNKR-MILIYLLPVKMLLGH 68 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-TTCHHHHH-HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCC-HhHHHHHH-HHHHHHHHHHHHcCC
Confidence 577999999999999999999999999999985 34332222 245555455555665
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=44.01 E-value=1e+02 Score=28.04 Aligned_cols=65 Identities=15% Similarity=0.090 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQ---EARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 583 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~---eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~L 583 (705)
+.+-|.+++++.+..... ++...|.+-++.. +...-.++..|+-.|.++|+++.|.++.+..|..
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~------~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC------cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 346777788888877654 4777777655431 2223346777777789999999999999987743
No 260
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=43.49 E-value=1.6e+02 Score=27.08 Aligned_cols=74 Identities=12% Similarity=0.058 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHHHHH
Q 005266 555 QYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL-GDRGNEMENDEYRRKKLDELQKRLAD 633 (705)
Q Consensus 555 ~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q~~al~~L~~l~~~~-Gd~~~A~e~~~~~~~~~~~l~~~~~~ 633 (705)
..+...+.+|..-||.++|.-+|-+-++|..++..++.---.. ..++.. |+. .-...+........+|..++.+
T Consensus 43 ~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpkHpdyk~~~----~~~k~~l~k~-~~~~vl~~lE~LK~~L~~rYe~ 117 (144)
T 2a9u_A 43 LKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDFKQQQ----DYFHSILGPG-NIKKAVEEAERLSESLKLRYEE 117 (144)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSHHHHHTH----HHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCcchhhhh----HHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678999999999999999999999999999877443322 223333 442 2445666777777777777765
No 261
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=42.55 E-value=30 Score=28.19 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChh
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKS 467 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~ 467 (705)
-+|-.+...|++++|..||-.|++..+++.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 578889999999999999999999988865
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=41.71 E-value=53 Score=40.24 Aligned_cols=105 Identities=7% Similarity=-0.047 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHhhcccc-------------ccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHH
Q 005266 88 TFSLLSQCYHLVGAIPPQKLILYKALDLTSSA-------------SQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQ 154 (705)
Q Consensus 88 ~~~lLA~~y~~~~~~~~ak~~l~kai~~~~~~-------------~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~ 154 (705)
.-|+++++|...|.+..|....+||......+ .+..+.+.+...|++..+.++...+-+..+++.-.
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35899999999999999998888864332110 11223345566788889999999999999998777
Q ss_pred HHHHHHhhcCCc--hHHHHHHHHHHHHHhcccCChhHHHHHHHH
Q 005266 155 SGYVCATEISYP--DLQMFFATAILHVHLMQWDDENSVLRSINQ 196 (705)
Q Consensus 155 ~~~~~A~~~~~~--~~~~~~~La~~~~~L~~~~~~~~v~~al~~ 196 (705)
..+..+.. +++ ...+...+-..++.+ ..++++-.+|..
T Consensus 924 lAi~~~~~-~~~~~~~~l~~~iFk~~L~l---~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 924 LADASKET-DDEDLSIAITHETLKTACAA---GKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHCCS-CCHHHHHHHHHHHHHHHHHH---CCSGGGGHHHHH
T ss_pred HHHHhccC-CChhhHHHHHHHHHHHHHhh---CCHHHHHHHHHh
Confidence 76665433 343 344667777888888 778777777643
No 263
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=41.70 E-value=1.4e+02 Score=32.63 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHH
Q 005266 45 KTRLRISTLLLKHTHNVNHAKSHLERS 71 (705)
Q Consensus 45 ~~rLrla~iL~e~T~N~~~A~thLeka 71 (705)
.+-+.|+..+.. .++++.|+..|++|
T Consensus 287 ~lw~~y~~~~~r-~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 287 LLRINHLNYVLK-KRGLELFRKLFIEL 312 (493)
T ss_dssp HHHHHHHHHHHH-HHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHh
Confidence 344445544332 23455555555555
No 264
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.95 E-value=2.8e+02 Score=30.51 Aligned_cols=48 Identities=23% Similarity=0.097 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCCh
Q 005266 436 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 486 (705)
Q Consensus 436 ~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~ 486 (705)
+.-+|+++.+...++.|..+|.+|+.+.++.. ....-+|++....|+.
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G---~~~nqLavla~~~~~~ 202 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNG---QPYNQLAILASSKGDH 202 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS---HHHHHHHHHHHHTTCH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC---chHHHHHHHHhccccc
Confidence 34789999999999999999999999988632 2377788888877763
No 265
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=37.96 E-value=2.8e+02 Score=26.61 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-----------cCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM-----------GNLQLVSQYLTILGNLALALHDTVQAREILRSSL 581 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~-----------gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al 581 (705)
+.+.|.-.+++...++|..|...++.-+.---.++ -|+.-.--++..||.+....|+.++|.+++..+.
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 45667778889999999999999998873210111 2333444589999999999999999999999886
Q ss_pred H
Q 005266 582 T 582 (705)
Q Consensus 582 ~ 582 (705)
.
T Consensus 142 ~ 142 (242)
T 3kae_A 142 G 142 (242)
T ss_dssp H
T ss_pred C
Confidence 4
No 266
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=37.40 E-value=3.3e+02 Score=28.58 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHc
Q 005266 551 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 587 (705)
Q Consensus 551 ~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~ 587 (705)
...|.+....|......+++++|...++.|....++.
T Consensus 249 ~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a 285 (363)
T 3rau_A 249 YFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEA 285 (363)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777777777777766654443
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=36.81 E-value=3.7e+02 Score=27.70 Aligned_cols=162 Identities=9% Similarity=-0.026 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-HHHhcCC---hhHHHHHHHHHHHHHHhhCC-hhh--HHHHHHhhccccccCCccc
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVE-AAKITES---KSMQAMCHAYAAVSYFCIGD-AES--SSQAIDLIGPVYQMKDTIN 507 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~-Al~l~~~---~~g~a~a~~nlalv~l~~gd-~d~--~~~ALeli~~~~~~~~~~~ 507 (705)
+...+..-+.+++++++|...... |..+... .++-..|.+-+ -+|-..+. .+. ..+..+++..+ |.+..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llv-ev~~~~~~~~~~~~~~rl~~l~~~~---p~~~~ 110 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLL-EVYDLAEVKVDDISVARLVRLIAEL---DPSEP 110 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCCCSHHHHHHHHHHHTTC---CTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHC---CCCCc
Confidence 555677778889999999987555 4444433 33333333322 33333222 122 56666666553 21110
Q ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHH-----HH--
Q 005266 508 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILR-----SS-- 580 (705)
Q Consensus 508 g~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~-----~A-- 580 (705)
+=+.++++|++-+.+..+++.+.......+|.+|..-|++.+|+.++- ++
T Consensus 111 -----------------------~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~ 167 (312)
T 2wpv_A 111 -----------------------NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIK 167 (312)
T ss_dssp -----------------------THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHH
T ss_pred -----------------------hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHH
Confidence 015556667766643223355556667789999999999999888773 22
Q ss_pred -----HHHHHHc--CChhhHH--HHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 005266 581 -----LTLAKKL--YDIPTQI--WALSVLTALYQQLGDRGNEMENDEYRRKKLD 625 (705)
Q Consensus 581 -----l~LArk~--gD~~~q~--~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 625 (705)
.++.++. +++.... .+-.+| -|...|+...|...+..+.+...
T Consensus 168 ~a~~l~~w~~~~~~~~~~e~dlf~~RaVL--~yL~l~n~~~A~~~~~~f~~~~~ 219 (312)
T 2wpv_A 168 YVDLLWDWLCQVDDIEDSTVAEFFSRLVF--NYLFISNISFAHESKDIFLERFI 219 (312)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHH--HHHHTTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHH--HHHHhcCHHHHHHHHHHHHHHHh
Confidence 2333333 4432211 111122 45567888888887776665543
No 268
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=35.14 E-value=40 Score=28.91 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChh
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESKS 467 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~~ 467 (705)
-+|-.+...|++++|..||-.|++..+++.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 578888999999999999999999988865
No 269
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=34.49 E-value=2e+02 Score=34.49 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccchhhhHH
Q 005266 434 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA 513 (705)
Q Consensus 434 ~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g~~~qA 513 (705)
.+-..+|.++..+|+-+........+.. +.+...+..+...+|+++ .|+.+.++..++.+... .+.. . +-
T Consensus 491 ~AalALGli~vGTgn~~ai~~LL~~~~e-~~~e~vrR~aalgLGll~--~g~~e~~~~li~~L~~~----~dp~-v--Ry 560 (963)
T 4ady_A 491 AAALGMGLCMLGTGKPEAIHDMFTYSQE-TQHGNITRGLAVGLALIN--YGRQELADDLITKMLAS----DESL-L--RY 560 (963)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHT--TTCGGGGHHHHHHHHHC----SCHH-H--HH
T ss_pred HHHHHHhhhhcccCCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHhhh--CCChHHHHHHHHHHHhC----CCHH-H--HH
Confidence 4445677777778776655555554443 222233333444445443 46666655544444332 1111 1 33
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005266 514 SLHFAYGLLLMRQQDFQEARNRLAKGL 540 (705)
Q Consensus 514 ~al~~lG~~~~~~g~~~eA~~~L~eAL 540 (705)
.+-+.+|+++.-+|+...-...|+.+.
T Consensus 561 gaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 561 GGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 455677888888888655555666553
No 270
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=30.91 E-value=1e+02 Score=34.08 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 005266 515 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 582 (705)
Q Consensus 515 al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~ 582 (705)
++..+|-..-....+..|..++.+|..+. -..|+ .++.||-++...|+.-+|.=+|.+|+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~------~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQ------PYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSH------HHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC-CCCCc------hHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 56677888888888899999999999986 45555 788999999999999998888877764
No 271
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=25.28 E-value=3.6e+02 Score=32.85 Aligned_cols=152 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCChhH
Q 005266 26 KCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQ 105 (705)
Q Consensus 26 ~CLea~~~~~~~~~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~~~a 105 (705)
+||+---+..+ -+|..| |+|++|-+--.....++..=..+-.......... ..+.-|...|++.|.+..|
T Consensus 77 ~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~TynaLIdglcK~G~leeA 146 (1134)
T 3spa_A 77 GCLEDCTRQAP-ESPWEE-----QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQ----QRLLAFFKCCLLTDQLPLA 146 (1134)
T ss_dssp ---------------------------------------------------CCCHHH----HHHHHHHHHHHHHTCHHHH
T ss_pred hhHhhhcccCC-CCchHH-----HHHHHHHhhhhhhchhhhcCccccchhhHHHhHH----HHHHHHHHHHHhCCCHHHH
Q ss_pred HHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcccC
Q 005266 106 KLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWD 185 (705)
Q Consensus 106 k~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~~~A~~~L~~~~~~A~~~~~~~~~~~~~La~~~~~L~~~~ 185 (705)
..++....+... .+...+..+|+-+. ..++..|++..|.+++++....- ..|.+..+..|+.++-.. .
T Consensus 147 ~~Lf~eM~~m~~---kG~~PdvvTYNtLI---~Glck~G~~~eA~~Lf~eM~~~G---~~PDvvTYntLI~glcK~---G 214 (1134)
T 3spa_A 147 HHLLVVHHGQRQ---KRKLLTLDMYNAVM---LGWARQGAFKELVYVLFMVKDAG---LTPDLLSYAAALQCMGRQ---D 214 (1134)
T ss_dssp HHHHHHHHHSHH---HHTTCCHHHHHHHH---HHHHHHTCHHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHH---T
T ss_pred HHHHHHHHHHhh---cCCCCCHhHHHHHH---HHHHhCCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHhC---C
Q ss_pred Ch-hHHHHHHHHhHH
Q 005266 186 DE-NSVLRSINQCDR 199 (705)
Q Consensus 186 ~~-~~v~~al~~~~~ 199 (705)
.. +++.+.++...+
T Consensus 215 ~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 215 QDAGTIERCLEQMSQ 229 (1134)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=25.20 E-value=5.5e+02 Score=26.02 Aligned_cols=104 Identities=12% Similarity=0.013 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhCChhhHHHHHHhhccccccCCccch
Q 005266 429 EACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTING 508 (705)
Q Consensus 429 ~~~~a~~~~llG~~~~~~g~~~eA~~~f~~Al~l~~~~~g~a~a~~nlalv~l~~gd~d~~~~ALeli~~~~~~~~~~~g 508 (705)
+|.++..-..+-.+++-.|+++.|..+.+.+.+++++....+..+.++-..-.. |. +.+... ..|+ ..|
T Consensus 27 ~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~--------R~-~vfaG~-~~P~-~~g 95 (273)
T 1zbp_A 27 SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA--------RK-DFAQGA-ATAK-VLG 95 (273)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH--------HH-HHTTSC-CCEE-CCC
T ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH--------HH-HHHcCC-CCCC-CCC
Confidence 446677777888889999999999999999999998866555444443111110 00 001100 1121 111
Q ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 005266 509 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 543 (705)
Q Consensus 509 ~~~qA~al~~lG~~~~~~g~~~eA~~~L~eAL~la 543 (705)
....-.....-+......|+.++|.+.-.+|+..+
T Consensus 96 ~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 96 ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 10012345566777788999999999999998885
No 273
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.15 E-value=3.2e+02 Score=28.84 Aligned_cols=100 Identities=16% Similarity=0.060 Sum_probs=70.0
Q ss_pred HHhcCHHHHHHHHHHHHHHHHh----ccc------CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHcCChhhH
Q 005266 524 MRQQDFQEARNRLAKGLQIAHN----HMG------NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 593 (705)
Q Consensus 524 ~~~g~~~eA~~~L~eAL~la~~----e~g------n~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LArk~gD~~~q 593 (705)
....++++|..+|.+....... ... +..-.-.+...++..|+..|+..+|.+.++++-.+..+.+|....
T Consensus 87 ~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~ 166 (393)
T 4b4t_O 87 KDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLR 166 (393)
T ss_dssp HHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSH
T ss_pred hhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHH
Confidence 3556889999999865322110 000 112334566788999999999999999999999999999887644
Q ss_pred HH--HHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005266 594 IW--ALSVLTALYQQLGDRGNEMENDEYRRKK 623 (705)
Q Consensus 594 ~~--al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 623 (705)
+. -+...+..|+..|++..+....-.+...
T Consensus 167 v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 167 ITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 44 3455677889999988777666655543
No 274
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=24.98 E-value=2e+02 Score=26.93 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCchhhhhhhHHHHHHHHHHHcCCC-hhHHHHHHHHHhhccccccccccchhhHhHHHHHHHHHhhcCCH
Q 005266 68 LERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAI-PPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDY 146 (705)
Q Consensus 68 Leka~~l~~~i~~~~dlK~~~~~lLA~~y~~~~~~-~~ak~~l~kai~~~~~~~~~~~~~~W~~~f~~~lA~~~~~~~d~ 146 (705)
+.+...-++.. ....+.....|.||.-|.+..+. ..+|..+.+.|.+.. |+.-+. || .+..++.+
T Consensus 24 Ys~VI~~L~~~-~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkS-de~yL~--YW---IyiGRg~~------- 89 (161)
T 2ynq_A 24 YSDVITTLEDY-APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKT-DEQYML--YW---IYIGRSQS------- 89 (161)
T ss_dssp HHHHHHHHTTS-CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTS-CHHHHH--HH---HHHHHTCH-------
T ss_pred HHHHHHHHhcC-ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccC-CHHHHH--HH---HHHcCCch-------
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 005266 147 QSSISALQSGYVCATEISYPDLQMFFAT 174 (705)
Q Consensus 147 ~~A~~~L~~~~~~A~~~~~~~~~~~~~L 174 (705)
++..++|...+++.+-++..+
T Consensus 90 -------~eAlDiA~~L~D~qLilyAl~ 110 (161)
T 2ynq_A 90 -------EEALELARTIEDRDLIVYALL 110 (161)
T ss_dssp -------HHHHHHHHHHTCHHHHHHHHH
T ss_pred -------HHHHHHHHhcCcHHHHHHHHH
No 275
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=22.52 E-value=6.7e+02 Score=26.09 Aligned_cols=24 Identities=13% Similarity=-0.021 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 005266 435 IEMLRGQYAHSVGCYSEAAFHYVE 458 (705)
Q Consensus 435 ~~~llG~~~~~~g~~~eA~~~f~~ 458 (705)
+...+..-+.+++++++|....-.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH
Confidence 444555566677777777654433
No 276
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.79 E-value=3.2e+02 Score=25.49 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCh-----hHHHHHH-HHHHHHHHhhCChhh----HHHHHHhhccc
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITESK-----SMQAMCH-AYAAVSYFCIGDAES----SSQAIDLIGPV 499 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~~-----~g~a~a~-~nlalv~l~~gd~d~----~~~ALeli~~~ 499 (705)
.-|..+...|+|=+|...++..-+..+.. ..+++++ +..|+.+.+.|+.+. +.+|+..+...
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 45677777788888888888876654332 3566777 777888888888765 67777766653
No 277
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=20.74 E-value=6.1e+02 Score=24.93 Aligned_cols=84 Identities=7% Similarity=-0.035 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH----HH
Q 005266 513 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNH--MGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA----KK 586 (705)
Q Consensus 513 A~al~~lG~~~~~~g~~~eA~~~L~eAL~la~~e--~gn~~l~a~aL~~LG~i~~~lg~~~qA~~~~~~Al~LA----rk 586 (705)
+.+|-.++ -+..|+-+.|...+++|..+++.+ -.+|--.+.+|+.==-.|--++++++|..++++|+..+ +.
T Consensus 127 GDYyRYlA--E~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~~~~~~ 204 (227)
T 2o8p_A 127 SDISRYKL--EFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIKE 204 (227)
T ss_dssp HHHHHHHH--HTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHH--HHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhhc
Confidence 33444443 355777899999999999999642 34555667777776566778899999999999998874 44
Q ss_pred cCChhhHHHHHH
Q 005266 587 LYDIPTQIWALS 598 (705)
Q Consensus 587 ~gD~~~q~~al~ 598 (705)
..|......+..
T Consensus 205 ~E~m~~~~~~~~ 216 (227)
T 2o8p_A 205 QENMDRKAQITV 216 (227)
T ss_dssp CCCHHHHHHHHH
T ss_pred cccchhHHHHHH
Confidence 555544444333
No 278
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.42 E-value=3.8e+02 Score=22.43 Aligned_cols=69 Identities=13% Similarity=-0.027 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhhCChhh--HHHHHHhhccccccCCccchh
Q 005266 438 LRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCIGDAES--SSQAIDLIGPVYQMKDTINGV 509 (705)
Q Consensus 438 llG~~~~~~g~~~eA~~~f~~Al~l~~~---~~g~a~a~~nlalv~l~~gd~d~--~~~ALeli~~~~~~~~~~~g~ 509 (705)
..|..+...|+|=+|.+.++..-+-.++ ...+.++++..|+.+...|+... +.+|+..+.+. |++..|+
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~a~~ll~~a~~~L~~~---~~~~~gi 79 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRPGLRNLRKAEARLEGL---PCPLMGL 79 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTC---CSSBTTB
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhC---CCccCCc
Confidence 4678888899999999999998877643 33677888888999988888622 78888887765 3344455
Done!