BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005267
(705 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 207/672 (30%), Positives = 303/672 (45%), Gaps = 76/672 (11%)
Query: 2 FTNLTQLSSLNLADNQLIGSIPS--SIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
F L+SL+L+ N L G + + S+ L F+++S N ++ KL +L+
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155
Query: 60 LILSNISLSVSTKL--TVNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRG 117
L LS S+S + + ++ L L +S IS D+ + + L++LD+S N
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN-LEFLDVSSNNFST 214
Query: 118 RIPSWMWDIGVHTLFRLDLSRNFLT---SIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMV 174
IP ++ D L LD+S N L+ S L+ L + SN G +P LP +
Sbjct: 215 GIP-FLGD--CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL 271
Query: 175 Q-LSISNNSLTGEIP---SSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGM-NN 229
Q LS++ N TGEIP S C+ ++ L LS N G +P G+ +L NN
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 230 FQGTIP-QTYAKGCNLTYLRLSGNHLEGPLPPSLSN-CVNLQVLDVGNNNLSGPI-PE-C 285
F G +P T K L L LS N G LP SL+N +L LD+ +NN SGPI P C
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 286 LGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN-STLEVLDM 344
L L ++NN +G IP L N + L L + N LSG IP LG+ S L L +
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 345 RMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHW 404
+N G +PQ L +L L+ N L G +P L NC +L I + NN++ P W
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 405 LDVLPELQVLTLRSNRFCGPI----GDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFK 460
+ L L +L L +N F G I GD ++ + +DL+ N F G +P
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLI------WLDLNTNLFNGTIP-------- 555
Query: 461 AMMRRDDNSIEVNYMRSLNYSYYESISLTMK----GNDIQMERI-------LTTFATIDL 509
A M + I N++ Y Y ++ + + GN ++ + I L+T ++
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 510 SSNRFQGEISEVLGKLNSLKSLNISHNNL------------------------TGGIPSS 545
+S + G S S+ L++S+N L +G IP
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Query: 546 LRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXXXXXXEGPIPGGPQFNTFGIDSYS 605
+ +L L LDLSSNKL GRIP GPIP QF TF +
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735
Query: 606 GNVGLCGFPLSK 617
N GLCG+PL +
Sbjct: 736 NNPGLCGYPLPR 747
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 125/448 (27%), Positives = 185/448 (41%), Gaps = 104/448 (23%)
Query: 201 YLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTI------------------------PQ 236
+LSN+ ++G + +++L +LDL N+ G + P
Sbjct: 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 237 TYAKGCNL------------------------------TYLRLSGNHLEGPLPPSLSNCV 266
+ G L +L +SGN + G + +S CV
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 200
Query: 267 NLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSL 326
NL+ LDV +NN S IP LG+ + L LD+ N LSG + T L L++ +N
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 327 SGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSC-VLVSLKLNGNRLEGPLPP------ 379
GPIP L +L+ L + NKF+G +P +C L L L+GN G +PP
Sbjct: 260 VGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 380 -------------------SLVNCRHLEVIDVGNNQINETFPHWLDVL-PELQVLTLRSN 419
+L+ R L+V+D+ N+ + P L L L L L SN
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 420 RFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLN 479
F GPI + P L+ + L N FTG +P N S V+ S N
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC----------SELVSLHLSFN 428
Query: 480 YSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLT 539
Y + G L+ + L N +GEI + L + +L++L + N+LT
Sbjct: 429 Y---------LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 540 GGIPSSLRNLTELESLDLSSNKLAGRIP 567
G IPS L N T L + LS+N+L G IP
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIP 507
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 207/672 (30%), Positives = 303/672 (45%), Gaps = 76/672 (11%)
Query: 2 FTNLTQLSSLNLADNQLIGSIPS--SIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
F L+SL+L+ N L G + + S+ L F+++S N ++ KL +L+
Sbjct: 93 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 152
Query: 60 LILSNISLSVSTKL--TVNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRG 117
L LS S+S + + ++ L L +S IS D+ + + L++LD+S N
Sbjct: 153 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN-LEFLDVSSNNFST 211
Query: 118 RIPSWMWDIGVHTLFRLDLSRNFLT---SIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMV 174
IP ++ D L LD+S N L+ S L+ L + SN G +P LP +
Sbjct: 212 GIP-FLGD--CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL 268
Query: 175 Q-LSISNNSLTGEIP---SSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGM-NN 229
Q LS++ N TGEIP S C+ ++ L LS N G +P G+ +L NN
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 326
Query: 230 FQGTIP-QTYAKGCNLTYLRLSGNHLEGPLPPSLSN-CVNLQVLDVGNNNLSGPI-PE-C 285
F G +P T K L L LS N G LP SL+N +L LD+ +NN SGPI P C
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 386
Query: 286 LGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN-STLEVLDM 344
L L ++NN +G IP L N + L L + N LSG IP LG+ S L L +
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 345 RMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHW 404
+N G +PQ L +L L+ N L G +P L NC +L I + NN++ P W
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 405 LDVLPELQVLTLRSNRFCGPI----GDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFK 460
+ L L +L L +N F G I GD ++ + +DL+ N F G +P
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAELGDCRSLI------WLDLNTNLFNGTIP-------- 552
Query: 461 AMMRRDDNSIEVNYMRSLNYSYYESISLTMK----GNDIQMERI-------LTTFATIDL 509
A M + I N++ Y Y ++ + + GN ++ + I L+T ++
Sbjct: 553 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 612
Query: 510 SSNRFQGEISEVLGKLNSLKSLNISHNNL------------------------TGGIPSS 545
+S + G S S+ L++S+N L +G IP
Sbjct: 613 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Query: 546 LRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXXXXXXEGPIPGGPQFNTFGIDSYS 605
+ +L L LDLSSNKL GRIP GPIP QF TF +
Sbjct: 673 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 732
Query: 606 GNVGLCGFPLSK 617
N GLCG+PL +
Sbjct: 733 NNPGLCGYPLPR 744
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 125/448 (27%), Positives = 185/448 (41%), Gaps = 104/448 (23%)
Query: 201 YLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTI------------------------PQ 236
+LSN+ ++G + +++L +LDL N+ G + P
Sbjct: 80 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 237 TYAKGCNL------------------------------TYLRLSGNHLEGPLPPSLSNCV 266
+ G L +L +SGN + G + +S CV
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 197
Query: 267 NLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSL 326
NL+ LDV +NN S IP LG+ + L LD+ N LSG + T L L++ +N
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 327 SGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSC-VLVSLKLNGNRLEGPLPP------ 379
GPIP L +L+ L + NKF+G +P +C L L L+GN G +PP
Sbjct: 257 VGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 380 -------------------SLVNCRHLEVIDVGNNQINETFPHWLDVL-PELQVLTLRSN 419
+L+ R L+V+D+ N+ + P L L L L L SN
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 420 RFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLN 479
F GPI + P L+ + L N FTG +P N S V+ S N
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC----------SELVSLHLSFN 425
Query: 480 YSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLT 539
Y + G L+ + L N +GEI + L + +L++L + N+LT
Sbjct: 426 Y---------LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 540 GGIPSSLRNLTELESLDLSSNKLAGRIP 567
G IPS L N T L + LS+N+L G IP
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIP 504
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 115/235 (48%), Gaps = 6/235 (2%)
Query: 165 SLPNLPPHMVQLSISN-NSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLEN 222
SL NLP ++ L I N+L G IP + L+ + YLY+++ ++SG IP L TL
Sbjct: 71 SLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129
Query: 223 LDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNL-QVLDVGNNNLSGP 281
LD N GT+P + + NL + GN + G +P S + L + + N L+G
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189
Query: 282 IPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEV 341
IP N L+F+D+ N L G G+ + + + NSL+ + + + L
Sbjct: 190 IPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG 248
Query: 342 LDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQ 396
LD+R N+ G+LPQ + L SL ++ N L G +P N + +V NN+
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 6/221 (2%)
Query: 187 IPSSFCNLSSIQYLYLSN-NSLSGQIPQCLGNST-LENLDLGMNNFQGTIPQTYAKGCNL 244
IPSS NL + +LY+ N+L G IP + T L L + N G IP ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 245 TYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRL-SFLDVRNNNLS 303
L S N L G LPPS+S+ NL + N +SG IP+ G+ ++L + + + N L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 304 GPIPECLGNSTSLSFLDVGNNSLSGPIPEYLG-NSTLEVLDMRMNKFSGSLPQTFGKSCV 362
G IP N +L+F+D+ N L G G + + + + N + L + G S
Sbjct: 188 GKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV-GLSKN 245
Query: 363 LVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPH 403
L L L NR+ G LP L + L ++V N + P
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 131/299 (43%), Gaps = 29/299 (9%)
Query: 268 LQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGP--IPECLGNSTSLSFLDVGN-N 324
L D N G + + + R++ LD+ NL P IP L N L+FL +G N
Sbjct: 28 LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87
Query: 325 SLSGPIPEYLGNST-LEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVN 383
+L GPIP + T L L + SG++P + LV+L + N L G LPPS+ +
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 384 CRHLEVIDVGNNQINETFPHWLDVLPEL-QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDL 442
+L I N+I+ P +L +T+ NR G I T + L +DL
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---NLAFVDL 204
Query: 443 SYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILT 502
S N G + + D N+ +++ ++ SL + + + L
Sbjct: 205 SRNMLEGDASVLF--------GSDKNTQKIHLAKN---------SLAFDLGKVGLSKNLN 247
Query: 503 TFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNK 561
+DL +NR G + + L +L L SLN+S NNL G IP NL + ++NK
Sbjct: 248 G---LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 9/238 (3%)
Query: 220 LENLDLGMNNFQGT--IPQTYAKGCNLTYLRLSG-NHLEGPLPPSLSNCVNLQVLDVGNN 276
+ NLDL N IP + A L +L + G N+L GP+PP+++ L L + +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 277 NLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN 336
N+SG IP+ L L LD N LSG +P + + +L + N +SG IP+ G+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 337 STLEVLDMRM--NKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGN 394
+ M + N+ +G +P TF + L + L+ N LEG + ++ + I +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 395 NQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLP 452
N + + + L L LR+NR G + T++ F L +++S+N G +P
Sbjct: 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEIP 285
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 101/231 (43%), Gaps = 45/231 (19%)
Query: 92 ISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLT-----SIDH 146
+ P + QL +L ++ + G IP ++ I TL LD S N L+ SI
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--KTLVTLDFSYNALSGTLPPSISS 147
Query: 147 LPWKNLEFLTLDSNLLQGSLPN----LPPHMVQLSISNNSLTGEIPSSFCNL-------- 194
LP NL +T D N + G++P+ ++IS N LTG+IP +F NL
Sbjct: 148 LP--NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205
Query: 195 ---------------SSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYA 239
+ Q ++L+ NSL+ + + + L LDL N GT+PQ
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 240 KGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVG----NNNLSG-PIPEC 285
+ L L +S N+L G +P NLQ DV N L G P+P C
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQG----GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 12/205 (5%)
Query: 16 NQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTV 75
N L+G IP +I +L L ++ ++ N SG++ + +++K L L S +LS + ++
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 76 NSSFPNLWALGLSACNIS-EFPDILKTQHQL-DWLDLSENQIRGRIPSWMWDIGVHTLFR 133
SS PNL + IS PD + +L + +S N++ G+IP ++ L
Sbjct: 146 -SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---NLAF 201
Query: 134 LDLSRNFL---TSIDHLPWKNLEFLTLDSNLLQGSLPN--LPPHMVQLSISNNSLTGEIP 188
+DLSRN L S+ KN + + L N L L L ++ L + NN + G +P
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261
Query: 189 SSFCNLSSIQYLYLSNNSLSGQIPQ 213
L + L +S N+L G+IPQ
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 512 NRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 567
N G I + KL L L I+H N++G IP L + L +LD S N L+G +P
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 560
LT + ++ G I + L ++ +L +L+ S+N L+G +P S+ +L L + N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 561 KLAGRIP 567
+++G IP
Sbjct: 160 RISGAIP 166
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 8 LSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSV------ELYDFAKLKNLKYL 60
L+ L+L +N++ G++P + +L L +++SFNN G + + +D + N K L
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 30/211 (14%)
Query: 27 FELVNLTFVSLSFNNFSGSV--ELYDFAKLKNLKYLILSNISLSVST------KLTVNSS 78
F+ ++T + LS N F S+ +D ++ LILSN S+ K N +
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268
Query: 79 FPNLWALGLSACNISE------FPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLF 132
F L A G+ C++S+ + L+ L L++N+I + W G+ L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW--GLTHLL 326
Query: 133 RLDLSRNFLTSIDHLPWKN---LEFLTLDSNLLQG-------SLPNLPPHMVQLSISNNS 182
+L+LS+NFL SID ++N LE L L N ++ LPNL +L++ N
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK----ELALDTNQ 382
Query: 183 LTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQ 213
L F L+S+Q ++L N P+
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 126/348 (36%), Gaps = 73/348 (20%)
Query: 166 LPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNS------------LSGQIPQ 213
+P LP H+ + +S NS+ +SF L +Q+L + + LS I
Sbjct: 25 VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84
Query: 214 CLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDV 273
L + L+ G N + CNL LSGN + PL +L++L +
Sbjct: 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK-PL-------TSLEMLVL 136
Query: 274 GNNNLSGPIPECLG-NSTRLSFLDVRNNNLSGPIPECLGN--STSLSFLDVGNNSLSGPI 330
+NN+ P N R LD+ N + E L N + L + + +L
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196
Query: 331 PEYLG---------NSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLK-------------- 367
+LG N+++ LD+ N F S+ + F + ++
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256
Query: 368 -------------------------LNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 402
L+ +++ L + LE + + N+IN+
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316
Query: 403 HWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGV 450
+ L L L L N F G I D++ KL ++DLSYN +
Sbjct: 317 NAFWGLTHLLKLNLSQN-FLGSI-DSRMFENLDKLEVLDLSYNHIRAL 362
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 110/278 (39%), Gaps = 40/278 (14%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIF-ELVNLTFVSLSFNNFSGSVE--LYDFAKLKNL 57
F LT L L L DN + P+S F + + L+FN E L +F K+
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG-KHF 182
Query: 58 KYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRG 117
L LS+I+L N + LG C + F + T LDLS N +
Sbjct: 183 TLLRLSSITLQDM----------NEYWLGWEKCG-NPFKNTSITT-----LDLSGNGFKE 226
Query: 118 RIPSWMWDIGVHTLFR---LDLSRNFLTSIDHLPWK---NLEFLTLDSNLLQGS------ 165
+ +D T + L S N +S H +K N F L+++ ++
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286
Query: 166 ----LPNLPPHMV---QLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN- 217
L ++ H QL+++ N + ++F L+ + L LS N L + N
Sbjct: 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346
Query: 218 STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLE 255
LE LDL N+ + Q++ NL L L N L+
Sbjct: 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 109/265 (41%), Gaps = 25/265 (9%)
Query: 168 NLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLG 226
+LPP L + NN +T F NL ++ L L NN +S P LE L L
Sbjct: 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 227 MNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNL--SGPIPE 284
N + +P+ K L LR+ N + + + V+++G N L SG
Sbjct: 109 KNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 285 CLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDM 344
+LS++ + + N++ IP+ L S + LD GN G + L L +
Sbjct: 166 AFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLD-GNKITKVDAASLKGLNNLAKLGL 223
Query: 345 RMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHW 404
N S + + L L LN N+L +P L + ++++V+ + NN I+
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS------ 276
Query: 405 LDVLPELQVLTLRSNRFCGPIGDTK 429
+ SN FC P +TK
Sbjct: 277 ----------AIGSNDFCPPGYNTK 291
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 118/250 (47%), Gaps = 42/250 (16%)
Query: 40 NNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFP--NLWALGLSACNISEFPD 97
NN ++ DF LKNL LIL N +S K++ + P L L LS + E P+
Sbjct: 61 NNKITEIKDGDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQLKELPE 117
Query: 98 ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTS--IDHLPWKNLEFL 155
K L L + EN+I ++ +++ G++ + ++L N L S I++ ++ ++ L
Sbjct: 118 --KMPKTLQELRVHENEIT-KVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 156 TL----DSNLLQGSLPN-LPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQ 210
+ D+N+ ++P LPP + +L + N +T +S L+++ L LS NS+S
Sbjct: 174 SYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA- 230
Query: 211 IPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQV 270
+ N +L N +L L L+ N L +P L++ +QV
Sbjct: 231 ----VDNGSLANTP------------------HLRELHLNNNKLVK-VPGGLADHKYIQV 267
Query: 271 LDVGNNNLSG 280
+ + NNN+S
Sbjct: 268 VYLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 109/265 (41%), Gaps = 25/265 (9%)
Query: 168 NLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLG 226
+LPP L + NN +T F NL ++ L L NN +S P LE L L
Sbjct: 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 227 MNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNL--SGPIPE 284
N + +P+ K L LR+ N + + + V+++G N L SG
Sbjct: 109 KNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 285 CLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDM 344
+LS++ + + N++ IP+ L S + LD GN G + L L +
Sbjct: 166 AFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLD-GNKITKVDAASLKGLNNLAKLGL 223
Query: 345 RMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHW 404
N S + + L L LN N+L +P L + ++++V+ + NN I+
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS------ 276
Query: 405 LDVLPELQVLTLRSNRFCGPIGDTK 429
+ SN FC P +TK
Sbjct: 277 ----------AIGSNDFCPPGYNTK 291
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 118/250 (47%), Gaps = 42/250 (16%)
Query: 40 NNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFP--NLWALGLSACNISEFPD 97
NN ++ DF LKNL LIL N +S K++ + P L L LS + E P+
Sbjct: 61 NNKITEIKDGDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQLKELPE 117
Query: 98 ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTS--IDHLPWKNLEFL 155
K L L + EN+I ++ +++ G++ + ++L N L S I++ ++ ++ L
Sbjct: 118 --KMPKTLQELRVHENEIT-KVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 156 TL----DSNLLQGSLPN-LPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQ 210
+ D+N+ ++P LPP + +L + N +T +S L+++ L LS NS+S
Sbjct: 174 SYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA- 230
Query: 211 IPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQV 270
+ N +L N +L L L+ N L +P L++ +QV
Sbjct: 231 ----VDNGSLANTP------------------HLRELHLNNNKLVK-VPGGLADHKYIQV 267
Query: 271 LDVGNNNLSG 280
+ + NNN+S
Sbjct: 268 VYLHNNNISA 277
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 109/456 (23%), Positives = 173/456 (37%), Gaps = 90/456 (19%)
Query: 7 QLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNIS 66
+L L+L+ N+L+ S VNL + LSFN F +F + LK+L LS
Sbjct: 70 ELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126
Query: 67 LSVSTKLTVNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDI 126
L S+ L ++ NIS+ L L E P + D
Sbjct: 127 LEKSS------------VLPIAHLNISKV-----------LLVLGETYGEKEDPEGLQDF 163
Query: 127 ---GVHTLFRLDLSRNFLTSIDHLPWKNLEF----LTLDSNLLQGSLPNLP-----PHMV 174
+H +F + +F+ + NLE L+ N L L P +
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223
Query: 175 QLSISNNSLTGEIPSSFCNL------SSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMN 228
L+++N T +SF + +++ Y +SN L GQ LD
Sbjct: 224 NLTLNNIETTW---NSFIRILQLVWHTTVWYFSISNVKLQGQ------------LDFRDF 268
Query: 229 NFQGT----------------IPQTYA----KGCNLTYLRLSGNHLEGPLPPSLSNCVNL 268
++ GT PQ+Y N+ +SG + L P S
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP--SKISPF 326
Query: 269 QVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLS--GPIPECLGNSTSLSFLDVGNNSL 326
LD NN L+ + E G+ T L L ++ N L I E SL LD+ NS+
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386
Query: 327 SGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCV---LVSLKLNGNRLEGPLPPSLVN 383
S E G+ + + +N S L T + C+ + L L+ N+++ +P +V
Sbjct: 387 S--YDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIKS-IPKQVVK 442
Query: 384 CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 419
L+ ++V +NQ+ D L LQ + L +N
Sbjct: 443 LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 36/182 (19%)
Query: 1 MFTNLTQLSSLNLADNQL--IGSIPSSIFELVNLTFVSLSFN-------NFSG--SVELY 49
+F LTQL+ L+L+ N L G S F +L ++ LSFN NF G +E
Sbjct: 47 VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106
Query: 50 DFAK--------------LKNLKYLILSNISLSVSTKLTVNSSF---PNLWALGLSACNI 92
DF L+NL YL +S+ T++ N F +L L ++ +
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISH----THTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 93 SE--FPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWK 150
E PDI L +LDLS+ Q+ P+ + +L L++S N S+D P+K
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS--SLQVLNMSHNNFFSLDTFPYK 220
Query: 151 NL 152
L
Sbjct: 221 CL 222
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 105/233 (45%), Gaps = 33/233 (14%)
Query: 104 QLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSI--DHLPWKNLEFLTLD-SN 160
QL L LS N + + D G +L LDLS N + ++ + L + LE L SN
Sbjct: 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 112
Query: 161 LLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCL-GNST 219
L Q M + S+ F +L ++ YL +S+ G S+
Sbjct: 113 LKQ---------MSEFSV------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 220 LENLDLGMNNFQGT-IPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNL 278
LE L + N+FQ +P + + NLT+L LS LE P + ++ +LQVL++ +NN
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 279 SG--PIP-ECLGNSTRLSFLDVR-NNNLSGPIPECLGNSTSLSFLDVGNNSLS 327
P +CL + L LD N+ ++ E +SL+FL++ N +
Sbjct: 212 FSLDTFPYKCLNS---LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 30/185 (16%)
Query: 290 TRLSFLDVRNNNLS--GPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMR-- 345
T+L+ L + +N LS G + +TSL +LD+ N + +LG LE LD +
Sbjct: 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 111
Query: 346 ----MNKFSGSLP-------------------QTFGKSCVLVSLKLNGNRL-EGPLPPSL 381
M++FS L F L LK+ GN E LP
Sbjct: 112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171
Query: 382 VNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIID 441
R+L +D+ Q+ + P + L LQVL + N F DT L+++D
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTFPYKCLNSLQVLD 229
Query: 442 LSYNQ 446
S N
Sbjct: 230 YSLNH 234
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 129/521 (24%), Positives = 206/521 (39%), Gaps = 106/521 (20%)
Query: 104 QLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRN-----------FLTSIDHLPWKNL 152
+L WLDLS +I I W G+H L L L+ N LTS+++L
Sbjct: 52 ELQWLDLSRCEIET-IEDKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 109
Query: 153 EFLTLDSNLLQGSLPNLPPHMVQLSISNNSL-TGEIPSSFCNLSSIQYLYLSNN---SLS 208
+ +L+S + G L L +L++++N + + ++P+ F NL+++ ++ LS N +++
Sbjct: 110 KLASLESFPI-GQLITLK----KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 164
Query: 209 GQIPQCLGNSTLENLDLGMN-NFQGTIPQTYAKGCNLTYLRLSGN-HLEGPLPPSLSNCV 266
Q L + NL L M+ N I +G L L L GN + + L N
Sbjct: 165 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA 224
Query: 267 NLQV--------LDVGNNNLSGP-IPECLGNSTRLSFLDVRNNNLSGPIPE--CLGNSTS 315
L V D N + P I E L + T F N+ S I + CL N ++
Sbjct: 225 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 284
Query: 316 LSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKF-SGSLPQTFGKSCVLVSLKLNGNRLE 374
+S V L +P++ +L ++ ++ +F + LP L SL L N+
Sbjct: 285 MSLAGVSIKYLED-VPKHFKWQSLSIIRCQLKQFPTLDLP-------FLKSLTLTMNK-- 334
Query: 375 GPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPF 434
G + V L +D+ N + S C D T
Sbjct: 335 GSISFKKVALPSLSYLDLSRNAL--------------------SFSGCCSYSDLGTN--- 371
Query: 435 PKLRIIDLSYN-------QFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESIS 487
LR +DLS+N F G+ + +L+ + ++R E + SL Y IS
Sbjct: 372 -SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR---VTEFSAFLSLEKLLYLDIS 427
Query: 488 LT--------------------MKGNDIQMERILTTFAT------IDLSSNRFQGEISEV 521
T M GN + + FA +DLS + + V
Sbjct: 428 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 487
Query: 522 LGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 562
L+ L+ LN+SHNNL S L L +LD S N++
Sbjct: 488 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 440 IDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESIS-LTMKGNDIQME 498
IDLS+N +L + + F + D + E+ + + +S L + GN IQ
Sbjct: 32 IDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 90
Query: 499 RI-----LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNL-TGGIPSSLRNLTEL 552
LT+ + + S +G+L +LK LN++HN + + +P+ NLT L
Sbjct: 91 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 150
Query: 553 ESLDLSSN 560
+DLS N
Sbjct: 151 VHVDLSYN 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 129/521 (24%), Positives = 206/521 (39%), Gaps = 106/521 (20%)
Query: 104 QLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRN-----------FLTSIDHLPWKNL 152
+L WLDLS +I I W G+H L L L+ N LTS+++L
Sbjct: 57 ELQWLDLSRCEIET-IEDKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114
Query: 153 EFLTLDSNLLQGSLPNLPPHMVQLSISNNSL-TGEIPSSFCNLSSIQYLYLSNN---SLS 208
+ +L+S + G L L +L++++N + + ++P+ F NL+++ ++ LS N +++
Sbjct: 115 KLASLESFPI-GQLITLK----KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169
Query: 209 GQIPQCLGNSTLENLDLGMN-NFQGTIPQTYAKGCNLTYLRLSGN-HLEGPLPPSLSNCV 266
Q L + NL L M+ N I +G L L L GN + + L N
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA 229
Query: 267 NLQV--------LDVGNNNLSGP-IPECLGNSTRLSFLDVRNNNLSGPIPE--CLGNSTS 315
L V D N + P I E L + T F N+ S I + CL N ++
Sbjct: 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289
Query: 316 LSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKF-SGSLPQTFGKSCVLVSLKLNGNRLE 374
+S V L +P++ +L ++ ++ +F + LP L SL L N+
Sbjct: 290 MSLAGVSIKYLED-VPKHFKWQSLSIIRCQLKQFPTLDLP-------FLKSLTLTMNK-- 339
Query: 375 GPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPF 434
G + V L +D+ N + S C D T
Sbjct: 340 GSISFKKVALPSLSYLDLSRNAL--------------------SFSGCCSYSDLGTN--- 376
Query: 435 PKLRIIDLSYN-------QFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESIS 487
LR +DLS+N F G+ + +L+ + ++R E + SL Y IS
Sbjct: 377 -SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR---VTEFSAFLSLEKLLYLDIS 432
Query: 488 LT--------------------MKGNDIQMERILTTFAT------IDLSSNRFQGEISEV 521
T M GN + + FA +DLS + + V
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492
Query: 522 LGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 562
L+ L+ LN+SHNNL S L L +LD S N++
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 440 IDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESIS-LTMKGNDIQME 498
IDLS+N +L + + F + D + E+ + + +S L + GN IQ
Sbjct: 37 IDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95
Query: 499 RI-----LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNL-TGGIPSSLRNLTEL 552
LT+ + + S +G+L +LK LN++HN + + +P+ NLT L
Sbjct: 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155
Query: 553 ESLDLSSN 560
+DLS N
Sbjct: 156 VHVDLSYN 163
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 33/232 (14%)
Query: 105 LDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSI--DHLPWKNLEFLTLD-SNL 161
L++LDLS N + + D G +L LDLS N + ++ + L + LE L SNL
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 162 LQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCL-GNSTL 220
Q M + S+ F +L ++ YL +S+ G S+L
Sbjct: 409 KQ---------MSEFSV------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 221 ENLDLGMNNFQGT-IPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLS 279
E L + N+FQ +P + + NLT+L LS LE P + ++ +LQVL++ +NN
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507
Query: 280 G--PIP-ECLGNSTRLSFLDVR-NNNLSGPIPECLGNSTSLSFLDVGNNSLS 327
P +CL + L LD N+ ++ E +SL+FL++ N +
Sbjct: 508 SLDTFPYKCLNS---LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 77/181 (42%), Gaps = 9/181 (4%)
Query: 168 NLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLS---GQIPQCLGNSTLENLD 224
N+P +L + +N L+ +F L+ ++ LYL++N L I + L N LE L
Sbjct: 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN--LETLW 91
Query: 225 LGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPE 284
+ N Q + + NL LRL N L+ P + L L +G N L
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151
Query: 285 CLGNSTRLSFLDVRNNNLSGPIPE-CLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLD 343
T L L + NN L +PE T L L + NN L +PE +S LE L
Sbjct: 152 VFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDS-LEKLK 208
Query: 344 M 344
M
Sbjct: 209 M 209
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 560
LT + L N Q V KL SLK L + +N L + LTEL++L L +N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 561 KLAGRIP 567
+L R+P
Sbjct: 192 QLK-RVP 197
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 11/177 (6%)
Query: 133 RLDLSRNFLTSIDHLPWK---NLEFLTLDSNLLQ----GSLPNLPPHMVQLSISNNSLTG 185
+LDL N L+S+ + L L L+ N LQ G L ++ L +++N L
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK-NLETLWVTDNKLQA 99
Query: 186 EIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNST-LENLDLGMNNFQGTIPQTYAKGCNL 244
F L ++ L L N L P+ + T L L LG N Q + K +L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 245 TYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNS-TRLSFLDVRNN 300
LRL N L+ + L+ L + NN L +PE +S +L L ++ N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQEN 215
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 76/201 (37%), Gaps = 27/201 (13%)
Query: 221 ENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSL-SNCVNLQVLDVGNNNLS 279
+ LDL N + + + L L L+ N L+ LP + NL+ L V +N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 280 GPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTL 339
L+ L + N L P + T L++L +G N L
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ------------ 146
Query: 340 EVLDMRMNKFSGSLPQ-TFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQIN 398
SLP+ F K L L+L N+L+ + L+ + + NNQ+
Sbjct: 147 ------------SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Query: 399 ETFPHWLDVLPELQVLTLRSN 419
D L +L++L L+ N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFE-LVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F L L+ L L NQL S+P +F+ L LT++SL +N S+ F KL +LK
Sbjct: 104 VFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKE 161
Query: 60 LILSNISLS 68
L L N L
Sbjct: 162 LRLYNNQLK 170
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 412 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 471
QV TL+++R I L I+ S NQ T + P+ L ++ ++ +
Sbjct: 42 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 472 VNYMRSLNYSYYESISLTMKGN---DIQMERILTTFATIDLSSNRFQGEISEVLGKLNSL 528
+ + +L LT+ N DI + LT ++LSSN +IS + G L SL
Sbjct: 100 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 153
Query: 529 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 563
+ LN S N +T P L NLT LE LD+SSNK++
Sbjct: 154 QQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 122/276 (44%), Gaps = 22/276 (7%)
Query: 131 LFRLDLSRNFLTSIDHLP-WKNLEFLTLDSNLLQ--GSLPNLPPHMVQLSISNNSLTGEI 187
L L L N +T ID L NL L L SN + +L L + QL+ S+N +T
Sbjct: 109 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SLQQLNFSSNQVTDLK 167
Query: 188 PSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYL 247
P NL++++ L +S+N +S I + LE+L N P NL L
Sbjct: 168 P--LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 222
Query: 248 RLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP 307
L+GN L+ +L++ NL LD+ NN +S P L T+L+ L + N +S P
Sbjct: 223 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
Query: 308 ECLGNSTSLSFLDVGNNSLSGPIP-EYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSL 366
L T+L+ L++ N L P L N L L + N S P L L
Sbjct: 279 --LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP--VSSLTKLQRL 332
Query: 367 KLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 402
N++ SL N ++ + G+NQI++ P
Sbjct: 333 FFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 366
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 104/234 (44%), Gaps = 43/234 (18%)
Query: 5 LTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSN 64
LT L LN + NQ+ P + L L + +S N S ++ AKL NL+ LI +N
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLIATN 204
Query: 65 ISLSVSTKLTVNSSFPNLWALGLSACNISEFPDI--LKTQHQLDWLDLSENQIRGRIP-- 120
+S T L + NL L L N ++ DI L + L LDL+ NQI P
Sbjct: 205 NQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 258
Query: 121 ------------SWMWDI----GVHTLFRLDLSRNFLTSIDHLP-WKNLEFLTLDSNLLQ 163
+ + +I G+ L L+L+ N L I + KNL +LTL N
Sbjct: 259 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN--- 315
Query: 164 GSLPNLPP-----HMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIP 212
++ ++ P + +L NN ++ SS NL++I +L +N +S P
Sbjct: 316 -NISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 366
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 151 NLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQ 210
NL+ + +N+ + + +L ++ NSLT E+P+ NLS+++ L LS+N L+
Sbjct: 233 NLQIFNISANIFKYDF------LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS- 284
Query: 211 IPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLE 255
+P LG+ +N T+P + CNL +L + GN LE
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 244 LTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLS 303
LT L L+GN L LP + N NL+VLD+ +N L+ +P LG+ +L + +N ++
Sbjct: 249 LTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Query: 304 GPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLE--VLDMRMNKFSGSLPQ 355
+P GN +L FL V N L + L ++ + +R N+ LP
Sbjct: 307 T-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 518 ISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 562
IS + K + L L ++ N+LT +P+ ++NL+ L LDLS N+L
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRL 282
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 33/232 (14%)
Query: 105 LDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSI--DHLPWKNLEFLTLD-SNL 161
L++LDLS N + + D G +L LDLS N + ++ + L + LE L SNL
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 432
Query: 162 LQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCL-GNSTL 220
Q M + S+ F +L ++ YL +S+ G S+L
Sbjct: 433 KQ---------MSEFSV------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471
Query: 221 ENLDLGMNNFQGT-IPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLS 279
E L + N+FQ +P + + NLT+L LS LE P + ++ +LQVL++ +NN
Sbjct: 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531
Query: 280 G--PIP-ECLGNSTRLSFLDVR-NNNLSGPIPECLGNSTSLSFLDVGNNSLS 327
P +CL + L LD N+ ++ E +SL+FL++ N +
Sbjct: 532 SLDTFPYKCLNS---LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 14/180 (7%)
Query: 390 IDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTG 449
+ N+ I E++ ++V+P + + N + P +PF + +DLS+N
Sbjct: 13 LAAANSSIPESWEPCVEVVPNITYQCMELNFYKIP-----DNLPFST-KNLDLSFNPLRH 66
Query: 450 VLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESIS-LTMKGNDIQMERI-----LTT 503
L + F + D + E+ + Y +S L + GN IQ + L++
Sbjct: 67 -LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125
Query: 504 FATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 562
+ + +G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 71/183 (38%), Gaps = 30/183 (16%)
Query: 292 LSFLDVRNNNLS--GPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMR---- 345
L FLD+ N LS G + + SL +LD+ N + +LG LE LD +
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 432
Query: 346 --MNKFSGSLP-------------------QTFGKSCVLVSLKLNGNRL-EGPLPPSLVN 383
M++FS L F L LK+ GN E LP
Sbjct: 433 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 492
Query: 384 CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLS 443
R+L +D+ Q+ + P + L LQVL + N F DT L+++D S
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTFPYKCLNSLQVLDYS 550
Query: 444 YNQ 446
N
Sbjct: 551 LNH 553
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 12/150 (8%)
Query: 8 LSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISL 67
L L+L+ N +I ++ S+ L L + +N E F L+NL YL +S+
Sbjct: 399 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH--- 454
Query: 68 SVSTKLTVNSSF---PNLWALGLSACNISE--FPDILKTQHQLDWLDLSENQIRGRIPSW 122
T++ N F +L L ++ + E PDI L +LDLS+ Q+ P+
Sbjct: 455 -THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513
Query: 123 MWDIGVHTLFRLDLSRNFLTSIDHLPWKNL 152
+ +L L++S N S+D P+K L
Sbjct: 514 FNSLS--SLQVLNMSHNNFFSLDTFPYKCL 541
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 220 LENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLS 279
L+ LDL Q Y +L+ L L+GN ++ + S +LQ L NL+
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137
Query: 280 GPIPECLGNSTRLSFLDVRNNNL-SGPIPECLGNSTSLSFLDVGNNSL 326
+G+ L L+V +N + S +PE N T+L LD+ +N +
Sbjct: 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 84/234 (35%), Gaps = 66/234 (28%)
Query: 385 RHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSY 444
+HLE+++ Q FP L L+ LT SN+ G+ + V P L +DLS
Sbjct: 331 QHLELVNCKFGQ----FPTL--KLKSLKRLTFTSNK----GGNAFSEVDLPSLEFLDLSR 380
Query: 445 NQFT----------GVLPIWYLN-GFKAMMRRDDNSIEVNYMRSLNYSY----------- 482
N + G + + YL+ F ++ N + + + L++ +
Sbjct: 381 NGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440
Query: 483 --------YESIS--------------------LTMKGNDIQMERI------LTTFATID 508
Y IS L M GN Q + L +D
Sbjct: 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500
Query: 509 LSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 562
LS + + L+SL+ LN+SHNN + L L+ LD S N +
Sbjct: 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 162/400 (40%), Gaps = 107/400 (26%)
Query: 160 NLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNST 219
NL SLP LPPH+ L S NSLT E+P ++PQ L +
Sbjct: 80 NLGLSSLPELPPHLESLVASCNSLT-ELP---------------------ELPQSLKSLL 117
Query: 220 LENLDLGMNNFQG--TIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNN 277
++N NN + +P L YL +S N LE P L N L+++DV NN+
Sbjct: 118 VDN-----NNLKALSDLPPL------LEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNS 164
Query: 278 LSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNS 337
L +P+ L F+ NN L +PE L N L+ + NNSL
Sbjct: 165 LKK-LPDL---PPSLEFIAAGNNQLEE-LPE-LQNLPFLTAIYADNNSLK---------- 208
Query: 338 TLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQI 397
++ SL + +L L P L N L I NN +
Sbjct: 209 -------KLPDLPLSLESIVAGNNILEEL------------PELQNLPFLTTIYADNNLL 249
Query: 398 NETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVP-FPK-LRIIDLSYNQFTGV--LP- 452
+T P D+ P L+ L +R N T +P P+ L +D+S N F+G+ LP
Sbjct: 250 -KTLP---DLPPSLEALNVRDNYL--------TDLPELPQSLTFLDVSENIFSGLSELPP 297
Query: 453 -IWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSS 511
++YLN +R + + LN S + I L ++ER++ +F
Sbjct: 298 NLYYLNASSNEIRSLCDLPP--SLEELNVSNNKLIELPALP--PRLERLIASF------- 346
Query: 512 NRFQGEISEVLGKLNSLKSLNISHNNLTG--GIPSSLRNL 549
++EV +LK L++ +N L IP S+ +L
Sbjct: 347 ----NHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDL 382
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 32/191 (16%)
Query: 8 LSSLNLADNQL--IGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNI 65
L +LN+ DN L + +P S LTF+ +S N FSG EL NL YL S+
Sbjct: 259 LEALNVRDNYLTDLPELPQS------LTFLDVSENIFSGLSELP-----PNLYYLNASSN 307
Query: 66 SLSVSTKLTVNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWD 125
+ L P+L L +S + E P + +L+ L S N + +P +
Sbjct: 308 EIRSLCDLP-----PSLEELNVSNNKLIELPAL---PPRLERLIASFNHL-AEVPELPQN 358
Query: 126 IGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTG 185
+ +L + N L +P +++E L ++S+L +P LP ++ QL + N L
Sbjct: 359 LK-----QLHVEYNPLREFPDIP-ESVEDLRMNSHL--AEVPELPQNLKQLHVETNPLRE 410
Query: 186 --EIPSSFCNL 194
+IP S +L
Sbjct: 411 FPDIPESVEDL 421
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 27/185 (14%)
Query: 105 LDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSI--DHLPWKNLEFLTLD-SNL 161
L++LDLS N + + D G +L LDLS N + ++ + L + LE L SNL
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 162 LQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCL-GNSTL 220
Q M + S+ F +L ++ YL +S+ G S+L
Sbjct: 409 KQ---------MSEFSV------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 221 ENLDLGMNNFQGT-IPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLS 279
E L + N+FQ +P + + NLT+L LS LE P + ++ +LQVL++ +N L
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507
Query: 280 GPIPE 284
+P+
Sbjct: 508 S-VPD 511
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 12/218 (5%)
Query: 147 LPWKNLEFLTLDSN-----LLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLY 201
L K+L+ LT SN + LP+L + LS + S G S +S++YL
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSL--EFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 202 LSNNSLSGQIPQCLGNSTLENLDLGMNNF-QGTIPQTYAKGCNLTYLRLSGNHLEGPLPP 260
LS N + LG LE+LD +N Q + + NL YL +S H
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 261 SLSNCVNLQVLDV-GNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFL 319
+ +L+VL + GN+ +P+ L+FLD+ L P + +SL L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 320 DVGNNSLSGPIPEYLGN--STLEVLDMRMNKFSGSLPQ 355
++ +N L +P+ + + ++L+ + + N + S P+
Sbjct: 500 NMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 522 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 562
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 64/157 (40%), Gaps = 28/157 (17%)
Query: 292 LSFLDVRNNNLS--GPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMR---- 345
L FLD+ N LS G + +TSL +LD+ N + +LG LE LD +
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 346 --MNKFSGSLP-------------------QTFGKSCVLVSLKLNGNRL-EGPLPPSLVN 383
M++FS L F L LK+ GN E LP
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Query: 384 CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNR 420
R+L +D+ Q+ + P + L LQVL + SN+
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 412 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 471
QV TL+++R I L I+ S NQ T + P+ L ++ ++ +
Sbjct: 42 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 472 VNYMRSLNYSYYESISLTMKGN---DIQMERILTTFATIDLSSNRFQGEISEVLGKLNSL 528
+ + +L LT+ N DI + LT ++LSSN +IS + G L SL
Sbjct: 100 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 153
Query: 529 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 563
+ L+ S N +T P L NLT LE LD+SSNK++
Sbjct: 154 QQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 123/276 (44%), Gaps = 22/276 (7%)
Query: 131 LFRLDLSRNFLTSIDHLP-WKNLEFLTLDSNLLQ--GSLPNLPPHMVQLSISNNSLTGEI 187
L L L N +T ID L NL L L SN + +L L + QLS S+N +T
Sbjct: 109 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SLQQLSFSSNQVTDLK 167
Query: 188 PSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYL 247
P NL++++ L +S+N +S I + LE+L N P NL L
Sbjct: 168 P--LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 222
Query: 248 RLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP 307
L+GN L+ +L++ NL LD+ NN +S P L T+L+ L + N +S P
Sbjct: 223 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
Query: 308 ECLGNSTSLSFLDVGNNSLSGPIP-EYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSL 366
L T+L+ L++ N L P L N L L + N S P L L
Sbjct: 279 --LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP--VSSLTKLQRL 332
Query: 367 KLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 402
+ N++ SL N ++ + G+NQI++ P
Sbjct: 333 FFSNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 366
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 105/234 (44%), Gaps = 43/234 (18%)
Query: 5 LTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSN 64
LT L L+ + NQ+ P + L L + +S N S ++ AKL NL+ LI +N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLIATN 204
Query: 65 ISLSVSTKLTVNSSFPNLWALGLSACNISEFPDI--LKTQHQLDWLDLSENQIRGRIP-- 120
+S T L + NL L L N ++ DI L + L LDL+ NQI P
Sbjct: 205 NQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 258
Query: 121 ------------SWMWDI----GVHTLFRLDLSRNFLTSIDHLP-WKNLEFLTLDSNLLQ 163
+ + +I G+ L L+L+ N L I + KNL +LTL N
Sbjct: 259 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN--- 315
Query: 164 GSLPNLPP-----HMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIP 212
++ ++ P + +L SNN ++ SS NL++I +L +N +S P
Sbjct: 316 -NISDISPVSSLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 366
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 412 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 471
QV TL+++R I L I+ S NQ T + P+ L ++ ++ +
Sbjct: 42 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 472 VNYMRSLNYSYYESISLTMKGN---DIQMERILTTFATIDLSSNRFQGEISEVLGKLNSL 528
+ + +L LT+ N DI + LT ++LSSN +IS + G L SL
Sbjct: 100 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 153
Query: 529 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 563
+ L+ S N +T P L NLT LE LD+SSNK++
Sbjct: 154 QQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 122/276 (44%), Gaps = 22/276 (7%)
Query: 131 LFRLDLSRNFLTSIDHLP-WKNLEFLTLDSNLLQ--GSLPNLPPHMVQLSISNNSLTGEI 187
L L L N +T ID L NL L L SN + +L L + QLS S+N +T
Sbjct: 109 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SLQQLSFSSNQVTDLK 167
Query: 188 PSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYL 247
P NL++++ L +S+N +S I + LE+L N P NL L
Sbjct: 168 P--LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 222
Query: 248 RLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP 307
L+GN L+ +L++ NL LD+ NN +S P L T+L+ L + N +S P
Sbjct: 223 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
Query: 308 ECLGNSTSLSFLDVGNNSLSGPIP-EYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSL 366
L T+L+ L++ N L P L N L L + N S P L L
Sbjct: 279 --LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP--VSSLTKLQRL 332
Query: 367 KLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 402
N++ SL N ++ + G+NQI++ P
Sbjct: 333 FFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 366
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 104/234 (44%), Gaps = 43/234 (18%)
Query: 5 LTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSN 64
LT L L+ + NQ+ P + L L + +S N S ++ AKL NL+ LI +N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLIATN 204
Query: 65 ISLSVSTKLTVNSSFPNLWALGLSACNISEFPDI--LKTQHQLDWLDLSENQIRGRIP-- 120
+S T L + NL L L N ++ DI L + L LDL+ NQI P
Sbjct: 205 NQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 258
Query: 121 ------------SWMWDI----GVHTLFRLDLSRNFLTSIDHLP-WKNLEFLTLDSNLLQ 163
+ + +I G+ L L+L+ N L I + KNL +LTL N
Sbjct: 259 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN--- 315
Query: 164 GSLPNLPP-----HMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIP 212
++ ++ P + +L NN ++ SS NL++I +L +N +S P
Sbjct: 316 -NISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 366
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 140/319 (43%), Gaps = 45/319 (14%)
Query: 242 CNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNN 301
NL YL L+GN + P LSN V L L +G N ++ L N T L L + +N
Sbjct: 66 TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDN 121
Query: 302 LSGPIPECLGNSTSLSFLDVG-NNSLSGPIPEYLGNST-LEVLDMRMNKFSGSLPQTFGK 359
+S P L N T L++G N++LS P L N T L L + +K P
Sbjct: 122 ISDISP--LANLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTP--IAN 175
Query: 360 SCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 419
L SL LN N++E P + + H V NQI + P + L L + +N
Sbjct: 176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYV--NQITDITP--VANXTRLNSLKIGNN 231
Query: 420 RFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLN 479
+ I D +L +++ NQ + + N K + + ++ LN
Sbjct: 232 K----ITDLSPLANLSQLTWLEIGTNQISDI------NAVKDLTK----------LKXLN 271
Query: 480 YSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLT 539
+ + +DI + L+ ++ L++N+ E EV+G L +L +L +S N++T
Sbjct: 272 VG-------SNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHIT 324
Query: 540 GGIPSSLRNLTELESLDLS 558
P L +L++ +S D +
Sbjct: 325 DIRP--LASLSKXDSADFA 341
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 110/288 (38%), Gaps = 51/288 (17%)
Query: 168 NLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQ-CLGNSTLENLDLG 226
+LP ++ L++++N L P++F S + L NS+S P+ C L+ L+L
Sbjct: 22 DLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 227 MNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSG-PIPEC 285
N QT+ NLT L L N + N NL LD+ +N LS +
Sbjct: 82 HNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTG 141
Query: 286 LGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMR 345
+ L +N L +L E+LGNS+L LD+
Sbjct: 142 VQLENLQELLLAKNKIL----------------------ALRSEELEFLGNSSLRKLDLS 179
Query: 346 MN---KFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 402
N +FS QT GK L +L LN +L L L C L + N
Sbjct: 180 SNPLKEFSPGCFQTIGK---LFALLLNNAQLNPHLTEKL--CWELSNTSIQN-------- 226
Query: 403 HWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGV 450
L+L +N+ T + + + L +DLSYN V
Sbjct: 227 -----------LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDV 263
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 140/317 (44%), Gaps = 40/317 (12%)
Query: 6 TQLSSLNLADNQLIGSIPSSI--FELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLIL- 62
T + +L+LA+NQL+ + S+ + NLT + LS+NN V F+ L +L+YL L
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHD-VGNGSFSYLPSLRYLSLE 280
Query: 63 ----------SNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDLSE 112
S LS L++ +F S NI +F + L++L++ +
Sbjct: 281 YNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFS--FQWLKYLEYLNMDD 338
Query: 113 NQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPH 172
N I + G+ +L L LS+ F TS+ L N F+ SL + P
Sbjct: 339 NNIPSTKSNTF--TGLVSLKYLSLSKTF-TSLQTL--TNETFV---------SLAHSP-- 382
Query: 173 MVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNN----SLSGQIPQCLGNSTLENLDLGMN 228
++ L+++ N ++ +F L ++ L L N LSGQ + L N + + L N
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRN--IFEIYLSYN 440
Query: 229 NFQGTIPQTYAKGCNLTYLRLSGNHLEGP--LPPSLSNCVNLQVLDVGNNNLSGPIPECL 286
+ ++A +L L L L+ P NL +LD+ NNN++ + L
Sbjct: 441 KYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLL 500
Query: 287 GNSTRLSFLDVRNNNLS 303
L LD ++NNL+
Sbjct: 501 EGLENLEILDFQHNNLA 517
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 134/328 (40%), Gaps = 53/328 (16%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYL 60
+F L L LNLA N++ + + L NL ++LS+ N G + +F L + Y+
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-NLLGELYSSNFYGLPKVAYI 343
Query: 61 ILSNISLSVSTKLTVNSSFPNLWALGL------SACNISEFPDILKTQHQLDWL---DLS 111
L +++ T L L L + I PDI + ++L L +L+
Sbjct: 344 DLQKNHIAIIQDQTF-KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT 402
Query: 112 ENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPW----KNLEFLTLDSNLLQG--- 164
N I LS N L ++D L + +L+ L L+ N
Sbjct: 403 ANLIH-------------------LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443
Query: 165 -SLPNLPPHMVQLSISNNSLTGEIPSSFC-----NLSSIQYLYLSNNSLSGQIPQCLGNS 218
P+ P + QL + N L + C LS +Q LYL++N L+ P +
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503
Query: 219 T-LENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNN 277
T L L L N T+ NL L +S N L P P V+L VLD+ +N
Sbjct: 504 TALRGLSLNSNRL--TVLSHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNK 558
Query: 278 LSGPIPECLGNSTRLSFLDVRNNNLSGP 305
I EC ST +++L+ N ++GP
Sbjct: 559 F---ICEC-ELSTFINWLNHTNVTIAGP 582
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 82/362 (22%), Positives = 143/362 (39%), Gaps = 54/362 (14%)
Query: 240 KGCNLTYLRLSGNHLEGPLPPSLSNCVN------LQVLDVGNN----NLSGPIPECLGNS 289
+G L++ L+ N L + C+N L++LDV N +++G + S
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231
Query: 290 TRLSFLDVRN--------NNLSGPIPECLGN--STSLSFLDVGNN---SLSGPIPEYLGN 336
S + + +N+ P +S+ LD+ + SL+ + E L +
Sbjct: 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291
Query: 337 STLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQ 396
L+VL++ NK + + F L L L+ N L + + ID+ N
Sbjct: 292 --LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349
Query: 397 INETFPHWLDVLPELQVLTLRSN-----RFCGPIGDT----KTRVPFPKLRI----IDLS 443
I L +LQ L LR N F I D V PK+ + I LS
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409
Query: 444 YNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMK-GNDIQMERILT 502
N+ + +++L +R I + LN + + S S + +E++
Sbjct: 410 ENRLENLDILYFL------LRVPHLQILI-----LNQNRFSSCSGDQTPSENPSLEQLFL 458
Query: 503 TFATIDLSSNRFQGEIS-EVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNK 561
+ L+ ++ E+ +V L+ L+ L ++HN L P +LT L L L+SN+
Sbjct: 459 GENMLQLA---WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515
Query: 562 LA 563
L
Sbjct: 516 LT 517
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 109/454 (24%), Positives = 177/454 (38%), Gaps = 102/454 (22%)
Query: 81 NLWALGLSACNISEFPDILKTQH-----QLDWLDLSENQIRGRI--PSWMWDIGVHTLFR 133
+L+ L L C +S+ +LK + L LDLS+NQIR PS+ +++L
Sbjct: 98 HLFELRLYFCGLSD--AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG---KLNSLKS 152
Query: 134 LDLSRN--FLT---SIDHLPWKNLEFLTLDSNLLQ-------GSLPNLPPHMVQ--LSIS 179
+D S N FL ++ L K L F +L +N L G N +MV L +S
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212
Query: 180 NNSLTGEIPSSFCN-LSSIQYLYL-------------------SNNSLSGQIPQCLGNST 219
N T +I +F N +S Q L N+ +G L S+
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG-----LARSS 267
Query: 220 LENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLS 279
+ +LDL + + +L L L+ N + + NLQVL++ N L
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
Query: 280 GPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSG-----PIPE-- 332
+++++D++ N+++ + L LD+ +N+L+ IP+
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387
Query: 333 -------------------YLGNSTLEVLD---------------MRMNKFSG-SLPQTF 357
+L + LE LD + N+FS S QT
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447
Query: 358 GKSCVLVSLKLNGNRLEGPLPPSLV-----NCRHLEVIDVGNNQINETFPHWLDVLPELQ 412
++ L L L N L+ L HL+V+ + +N +N P L L+
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507
Query: 413 VLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQ 446
L+L SNR + +P L I+D+S NQ
Sbjct: 508 GLSLNSNRLTVL---SHNDLP-ANLEILDISRNQ 537
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 522 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 562
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 220 LENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLS 279
L+ LDL Q Y +L+ L L+GN ++ + S +LQ L NL+
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 280 GPIPECLGNSTRLSFLDVRNNNL-SGPIPECLGNSTSLSFLDVGNNSLSG 328
+G+ L L+V +N + S +PE N T+L LD+ +N +
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 522 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 562
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 220 LENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLS 279
L+ LDL Q Y +L+ L L+GN ++ + S +LQ L NL+
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 280 GPIPECLGNSTRLSFLDVRNNNL-SGPIPECLGNSTSLSFLDVGNNSL 326
+G+ L L+V +N + S +PE N T+L LD+ +N +
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 522 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 562
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 220 LENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLS 279
L+ LDL Q Y +L+ L L+GN ++ + S +LQ L NL+
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 280 GPIPECLGNSTRLSFLDVRNNNL-SGPIPECLGNSTSLSFLDVGNNSL 326
+G+ L L+V +N + S +PE N T+L LD+ +N +
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 522 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 562
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 220 LENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLS 279
L+ LDL Q Y +L+ L L+GN ++ + S +LQ L NL+
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 115
Query: 280 GPIPECLGNSTRLSFLDVRNNNL-SGPIPECLGNSTSLSFLDVGNNSL 326
+G+ L L+V +N + S +PE N T+L LD+ +N +
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 522 LGKLNSLKSLNISHNNLTG-GIPSSLRNLTELESLDLSSNKL 562
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 220 LENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLS 279
L+ LDL Q Y +L+ L L+GN ++ + S +LQ L NL+
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLA 115
Query: 280 GPIPECLGNSTRLSFLDVRNNNL-SGPIPECLGNSTSLSFLDVGNNSL 326
+G+ L L+V +N + S +PE N T+L LD+ +N +
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 13/193 (6%)
Query: 144 IDHLP------WKNLEFLTLDSNLLQ----GSLPNLPPHMVQLSISNNS-LTGEIPSSFC 192
I H+P +NL L L SN+L + L + QL +S+N+ L P++F
Sbjct: 43 ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL-LEQLDLSDNAQLRSVDPATFH 101
Query: 193 NLSSIQYLYLSNNSLSGQIPQCL-GNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSG 251
L + L+L L P G + L+ L L N Q T+ NLT+L L G
Sbjct: 102 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 161
Query: 252 NHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLG 311
N + + +L L + N ++ P + RL L + NNLS E L
Sbjct: 162 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 221
Query: 312 NSTSLSFLDVGNN 324
+L +L + +N
Sbjct: 222 PLRALQYLRLNDN 234
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 9/164 (5%)
Query: 2 FTNLTQLSSLNLADNQLIGSI-PSSIFELVNLTFVSLSFNNFSGSVELYD--FAKLKNLK 58
FT L L L+L+DN + S+ P++ L L + L + G EL F L L+
Sbjct: 75 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL---DRCGLQELGPGLFRGLAALQ 131
Query: 59 YLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPD-ILKTQHQLDWLDLSENQIRG 117
YL L + +L T NL L L IS P+ + H LD L L +N++
Sbjct: 132 YLYLQDNALQALPDDTFR-DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 190
Query: 118 RIPSWMWDIG-VHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSN 160
P D+G + TL+ + + L + P + L++L L+ N
Sbjct: 191 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIF-ELVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F L L L L DN L ++P F +L NLT + L N S SV F L +L
Sbjct: 123 LFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDR 180
Query: 60 LILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFP-DILKTQHQLDWLDLSEN----Q 114
L+L ++ L L L A N+S P + L L +L L++N
Sbjct: 181 LLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 239
Query: 115 IRGRIPSWMW 124
R R P W W
Sbjct: 240 CRAR-PLWAW 248
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 80/218 (36%), Gaps = 8/218 (3%)
Query: 249 LSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNN-NLSGPIP 307
L GN + S C NL +L + +N L+ L LD+ +N L P
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 308 ECLGNSTSLSFLDVGNNSLSGPIPE-YLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSL 366
L L + L P + G + L+ L ++ N TF L L
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 157
Query: 367 KLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIG 426
L+GNR+ + L+ + + N++ PH L L L L +N
Sbjct: 158 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-- 215
Query: 427 DTKTRVPFPKLRIIDLSYNQFTG---VLPIW-YLNGFK 460
T+ P L+ + L+ N + P+W +L F+
Sbjct: 216 PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFR 253
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 13/193 (6%)
Query: 144 IDHLP------WKNLEFLTLDSNLLQ----GSLPNLPPHMVQLSISNNS-LTGEIPSSFC 192
I H+P +NL L L SN+L + L + QL +S+N+ L P++F
Sbjct: 44 ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL-LEQLDLSDNAQLRSVDPATFH 102
Query: 193 NLSSIQYLYLSNNSLSGQIPQCL-GNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSG 251
L + L+L L P G + L+ L L N Q T+ NLT+L L G
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162
Query: 252 NHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLG 311
N + + +L L + N ++ P + RL L + NNLS E L
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222
Query: 312 NSTSLSFLDVGNN 324
+L +L + +N
Sbjct: 223 PLRALQYLRLNDN 235
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 9/164 (5%)
Query: 2 FTNLTQLSSLNLADNQLIGSI-PSSIFELVNLTFVSLSFNNFSGSVELYD--FAKLKNLK 58
FT L L L+L+DN + S+ P++ L L + L + G EL F L L+
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL---DRCGLQELGPGLFRGLAALQ 132
Query: 59 YLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPD-ILKTQHQLDWLDLSENQIRG 117
YL L + +L T NL L L IS P+ + H LD L L +N++
Sbjct: 133 YLYLQDNALQALPDDTFR-DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191
Query: 118 RIPSWMWDIG-VHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSN 160
P D+G + TL+ + + L + P + L++L L+ N
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIF-ELVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F L L L L DN L ++P F +L NLT + L N S SV F L +L
Sbjct: 124 LFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDR 181
Query: 60 LILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFP-DILKTQHQLDWLDLSEN----Q 114
L+L ++ L L L A N+S P + L L +L L++N
Sbjct: 182 LLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240
Query: 115 IRGRIPSWMW 124
R R P W W
Sbjct: 241 CRAR-PLWAW 249
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 80/218 (36%), Gaps = 8/218 (3%)
Query: 249 LSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNN-NLSGPIP 307
L GN + S C NL +L + +N L+ L LD+ +N L P
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 308 ECLGNSTSLSFLDVGNNSLSGPIPE-YLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSL 366
L L + L P + G + L+ L ++ N TF L L
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158
Query: 367 KLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIG 426
L+GNR+ + L+ + + N++ PH L L L L +N
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-- 216
Query: 427 DTKTRVPFPKLRIIDLSYNQFTG---VLPIW-YLNGFK 460
T+ P L+ + L+ N + P+W +L F+
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFR 254
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 5/169 (2%)
Query: 2 FTNLTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLI 61
F L L++L L DN+L +IP+ F ++ NN S+ Y F ++ +L+ L
Sbjct: 108 FNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166
Query: 62 LSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPS 121
L + NL L L+ CN+ E P+ L +LD LDLS N + P
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPG 225
Query: 122 WMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLP 170
G+ L +L + ++ + I+ + NL+ L ++ NL +L LP
Sbjct: 226 SFQ--GLMHLQKLWMIQSQIQVIERNAFDNLQSL-VEINLAHNNLTLLP 271
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 86/210 (40%), Gaps = 56/210 (26%)
Query: 91 NISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWK 150
N+ E PD + T +L L+L ENQI+ + +++ S HL +
Sbjct: 54 NLREVPDGISTNTRL--LNLHENQIQ--------------IIKVN-------SFKHL--R 88
Query: 151 NLEFLTLDSNLLQ----GSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNS 206
+LE L L N ++ G+ L ++ L + +N LT +F LS ++ L+L NN
Sbjct: 89 HLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147
Query: 207 LSGQIPQCLGNS--TLENLDLGMNNFQGTIPQTYAKG-----------CNLTY------- 246
+ IP N +L LDLG I + +G CNL
Sbjct: 148 IES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL 206
Query: 247 -----LRLSGNHLEGPLPPSLSNCVNLQVL 271
L LSGNHL P S ++LQ L
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 7/181 (3%)
Query: 150 KNLEFLTLDSNLLQG----SLPNLPPHMVQLSISNNSLTGEI-PSSFCNLSSIQYLYLSN 204
+NL L L SN L G + L + QL +S+N+ + P++F L + L+L
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTL-LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDR 113
Query: 205 NSLSGQIPQCL-GNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLS 263
L P G + L+ L L NN Q T+ NLT+L L GN + +
Sbjct: 114 CGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFR 173
Query: 264 NCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGN 323
+L L + N+++ P + RL L + NNLS E L SL +L + +
Sbjct: 174 GLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLND 233
Query: 324 N 324
N
Sbjct: 234 N 234
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 9/164 (5%)
Query: 2 FTNLTQLSSLNLADN-QLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYD--FAKLKNLK 58
FT LT L L+L+DN QL P++ L +L + L + G EL F L L+
Sbjct: 75 FTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHL---DRCGLQELGPGLFRGLAALQ 131
Query: 59 YLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPD-ILKTQHQLDWLDLSENQIRG 117
YL L + +L T NL L L I P+ + H LD L L +N +
Sbjct: 132 YLYLQDNNLQALPDNTFR-DLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVAR 190
Query: 118 RIPSWMWDIG-VHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSN 160
P D+G + TL+ + + L + +P ++L++L L+ N
Sbjct: 191 VHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 12/220 (5%)
Query: 249 LSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNN---NLSGP 305
L GN + S +C NL +L + +N L+G T L LD+ +N + P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 306 IP-ECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLV 364
LG+ +L G L + + G + L+ L ++ N TF L
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGL--FRGLAALQYLYLQDNNLQALPDNTFRDLGNLT 155
Query: 365 SLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGP 424
L L+GNR+ + L+ + + N + PH L L L L +N
Sbjct: 156 HLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL--S 213
Query: 425 IGDTKTRVPFPKLRIIDLSYNQFTG---VLPIW-YLNGFK 460
+ + VP L+ + L+ N + P+W +L F+
Sbjct: 214 MLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFR 253
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 97/236 (41%), Gaps = 25/236 (10%)
Query: 162 LQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSG-QIPQCLGNSTL 220
LQ +P ++ + N ++ +SF + ++ L+L +N+L+G G + L
Sbjct: 22 LQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLL 81
Query: 221 ENLDLGMN-NFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLS 279
E LDL N + P T+ +L L L L+ P LQ L + +NNL
Sbjct: 82 EQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNL- 140
Query: 280 GPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTL 339
+ L ++T F D LGN T L FL GN S P + G +L
Sbjct: 141 ----QALPDNT---FRD-------------LGNLTHL-FLH-GNRIPSVPEHAFRGLHSL 178
Query: 340 EVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNN 395
+ L + N + P F L++L L N L LV R L+ + + +N
Sbjct: 179 DRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIF-ELVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F L L L L DN L ++P + F +L NLT + L N SV + F L +L
Sbjct: 123 LFRGLAALQYLYLQDNNL-QALPDNTFRDLGNLTHLFLHGNRIP-SVPEHAFRGLHSLDR 180
Query: 60 LILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFP-DILKTQHQLDWLDLSEN----Q 114
L+L ++ L L L A N+S P ++L L +L L++N
Sbjct: 181 LLLHQNHVA-RVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCD 239
Query: 115 IRGRIPSWMW 124
R R P W W
Sbjct: 240 CRAR-PLWAW 248
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 109/262 (41%), Gaps = 21/262 (8%)
Query: 205 NSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLS-GNHLEGPLPPSL- 262
NS ++P L +S + L +N+ Q TYA T +L G + LPP +
Sbjct: 54 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113
Query: 263 SNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVG 322
N L VL + N+LS N+ +L+ L + NNNL + +TSL L +
Sbjct: 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173
Query: 323 NNSLSGP----IPE-YLGNSTLEVLDM--------RMNKFSGSLPQTFGKSCV-LVSLKL 368
+N L+ IP + N + +L ++ S+ G V L LKL
Sbjct: 174 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKL 233
Query: 369 NGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDT 428
N L L+N L +D+ N++ + H + L+ L + +NR +
Sbjct: 234 QHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL---VALN 288
Query: 429 KTRVPFPKLRIIDLSYNQFTGV 450
P P L+++DLS+N V
Sbjct: 289 LYGQPIPTLKVLDLSHNHLLHV 310
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 117/272 (43%), Gaps = 48/272 (17%)
Query: 98 ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLP---WKNLEF 154
+L + Q++ L+L++ QI I ++ + HT+ +L + N +I +LP ++N+
Sbjct: 64 LLDSFRQVELLNLNDLQIE-EIDTYAFAYA-HTIQKLYMGFN---AIRYLPPHVFQNVPL 118
Query: 155 LTLDSNLLQGSLPNLP-------PHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSL 207
LT+ L + L +LP P + LS+SNN+L +F +S+Q L LS+N L
Sbjct: 119 LTVLV-LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 208 S----GQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLS 263
+ IP + NL L + + A ++ +R GP+
Sbjct: 178 THVDLSLIPSLFHANVSYNL-LSTLAIPIAVEELDASHNSINVVR-------GPVN---- 225
Query: 264 NCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGN 323
V L +L + +NNL+ L N L +D+ N L + L L + N
Sbjct: 226 --VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281
Query: 324 NSLSG------PIPEYLGNSTLEVLDMRMNKF 349
N L PIP TL+VLD+ N
Sbjct: 282 NRLVALNLYGQPIP------TLKVLDLSHNHL 307
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 171 PHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSG-QIPQCLGNSTLENLDLGMNN 229
PH+V+L + N LTG P++F S IQ L L N + LG L+ L+L N
Sbjct: 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113
Query: 230 FQGTIPQTYAKGCNLTYLRLSGN 252
+P ++ +LT L L+ N
Sbjct: 114 ISCVMPGSFEHLNSLTSLNLASN 136
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAK 53
MF L QL +LNL DNQ+ +P S L +LT ++L+ N F+ + L FA+
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE 149
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 357 FGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTL 416
FG+ LV L+L N+L G P + H++ + +G N+I E L +L+ L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 417 RSNRF 421
N+
Sbjct: 110 YDNQI 114
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 507 IDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 560
+ L N+ + +++ L+ LK+LN+ N ++ +P S +L L SL+L+SN
Sbjct: 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFE-LVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F +LTQL+ LNLA NQL ++P +F+ L LT ++L N S+ + F LK+L +
Sbjct: 59 VFDSLTQLTYLNLAVNQLT-ALPVGVFDKLTKLTHLALHINQLK-SIPMGVFDNLKSLTH 116
Query: 60 LILSN 64
+ L N
Sbjct: 117 IYLFN 121
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 27/165 (16%)
Query: 175 QLSISNNSLT----GEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNF 230
+LS+ N SLT G +PS+ +L +++ L+LS+N LG++ L L G+ +
Sbjct: 85 KLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNP--------LGDAGLRLLCEGLLD- 135
Query: 231 QGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLG--- 287
PQ + + L Y RL+ E PL L L+ L V NN++ LG
Sbjct: 136 ----PQCHLEKLQLEYCRLTAASCE-PLASVLRATRALKELTVSNNDIGEAGARVLGQGL 190
Query: 288 --NSTRLSFLDVRNNNLS----GPIPECLGNSTSLSFLDVGNNSL 326
++ +L L + N L+ + + + SL LD+G+N L
Sbjct: 191 ADSACQLETLRLENCGLTPANCKDLCGIVASQASLRELDLGSNGL 235
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 33/136 (24%)
Query: 150 KNLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSL-- 207
K+LEFL L NL MV+ + N++ G PS +Q L LS N L
Sbjct: 360 KSLEFLDLSENL-----------MVEEYLKNSACKGAWPS-------LQTLVLSQNHLRS 401
Query: 208 ---SGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSN 264
+G+I L N L +LD+ N F +P + + +L LS + +
Sbjct: 402 MQKTGEILLTLKN--LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-----VVKT 453
Query: 265 CV--NLQVLDVGNNNL 278
C+ L+VLDV NNNL
Sbjct: 454 CIPQTLEVLDVSNNNL 469
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 165 SLPN-LPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSN---NSLSGQIPQCLGNSTL 220
S+P+ L M L +S N +T +++Q L L + N++ G LG +L
Sbjct: 45 SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG--SL 102
Query: 221 ENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSL-SNCVNLQVLDVGN 275
E+LDL N+ + +L YL L GN + SL N NLQ L +GN
Sbjct: 103 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 158
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 88/360 (24%), Positives = 142/360 (39%), Gaps = 69/360 (19%)
Query: 262 LSNCVNLQVLDVGN---NNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSF 318
L C NLQVL + + N + G LG+ L LD+ +N+LS G +SL +
Sbjct: 72 LRACANLQVLILKSSRINTIEGDAFYSLGS---LEHLDLSDNHLSSLSSSWFGPLSSLKY 128
Query: 319 LDVGNN-----SLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRL 373
L++ N ++ P TL + + + FS F L L++ L
Sbjct: 129 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGN--VETFSEIRRIDFAGLTSLNELEIKALSL 186
Query: 374 EGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN---RF-CGPIGDTK 429
SL + R + + + ++ + D+L ++ L LR RF P+ +
Sbjct: 187 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 246
Query: 430 TRVPFPKLR-----IIDLSYNQFTGVLPI-----------WYLNGF------KAMMRRDD 467
P KL + D S+N+ +L LNG ++ + +
Sbjct: 247 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 306
Query: 468 NSIEVNYMRSLN----YSYYE---SISLTMKGNDIQME------------RILTTFATID 508
+E +R L+ Y +Y+ SL K I +E + L + +D
Sbjct: 307 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD 366
Query: 509 LSSNRFQGEI---SEVLGKLNSLKSLNISHNNL-----TGGIPSSLRNLTELESLDLSSN 560
LS N E S G SL++L +S N+L TG I +L+NLT SLD+S N
Sbjct: 367 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT---SLDISRN 423
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFE-LVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F LT L+ LNLA NQL S+P +F+ L NLT + LS+N E F KL LK
Sbjct: 128 VFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGV-FDKLTQLKD 185
Query: 60 LIL 62
L L
Sbjct: 186 LRL 188
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 15/171 (8%)
Query: 397 INETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYL 456
I + FP D E T+++N + D T+ + I + + V I YL
Sbjct: 9 IKQIFPD--DAFAE----TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL 62
Query: 457 NGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQ-----MERILTTFATIDLSS 511
+ + + +++ ++ L Y L + GN +Q + LT + L
Sbjct: 63 PNVRYLALGGNKLHDISALKELTNLTY----LILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 512 NRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 562
N+ Q V KL +L LN++HN L LT L LDLS N+L
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 13/191 (6%)
Query: 171 PHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN--STLENLDLGMN 228
P++ L++ N L S+ L+++ YL L+ N L +P + + + L+ L L N
Sbjct: 63 PNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVEN 119
Query: 229 NFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGN 288
Q + K NLTYL L+ N L+ NL LD+ N L +PE + +
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFD 178
Query: 289 S-TRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMN 347
T+L L + N L TSL ++ + +N P + L +N
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------GIRYLSEWIN 232
Query: 348 KFSGSLPQTFG 358
K SG + + G
Sbjct: 233 KHSGVVRNSAG 243
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFE-LVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F LT L L L +NQL S+P +F+ L NLT+++L+ N S+ F KL NL
Sbjct: 104 VFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTE 161
Query: 60 LILS 63
L LS
Sbjct: 162 LDLS 165
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 560
LT ++L+ N+ Q V KL +L L++S+N L LT+L+ L L N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 561 KL 562
+L
Sbjct: 192 QL 193
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 94/375 (25%), Positives = 145/375 (38%), Gaps = 51/375 (13%)
Query: 192 CNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSG 251
C S+ L + +P+ + T LDLG N + +A +L L L+
Sbjct: 7 CECSAQDRAVLCHRKRFVAVPEGIPTET-RLLDLGKNRIKTLNQDEFASFPHLEELELNE 65
Query: 252 NHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLG 311
N + P + +N NL+ L + +N L + L+ LD+ N + +
Sbjct: 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125
Query: 312 NSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSG--SLPQTFGKSCVLVSLKLN 369
+ +L L+VG+N L Y+ + FSG SL Q + C L S+
Sbjct: 126 DLYNLKSLEVGDNDLV-----YISHRA----------FSGLNSLEQLTLEKCNLTSIPTE 170
Query: 370 G-NRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDT 428
+ L G + ++ RHL IN + L L+VL + P DT
Sbjct: 171 ALSHLHGLI---VLRLRHL--------NINAIRDYSFKRLYRLKVLEISH----WPYLDT 215
Query: 429 KTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISL 488
T L + LS + + YL + ++ Y+R LN S Y IS
Sbjct: 216 MTPNCLYGLNLTSLSITH-CNLTAVPYL-AVRHLV----------YLRFLNLS-YNPIS- 261
Query: 489 TMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRN 548
T++G+ M L I L + LN L+ LN+S N LT S +
Sbjct: 262 TIEGS---MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318
Query: 549 LTELESLDLSSNKLA 563
+ LE+L L SN LA
Sbjct: 319 VGNLETLILDSNPLA 333
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 137/352 (38%), Gaps = 56/352 (15%)
Query: 89 ACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLP 148
ACN I Q + DW L++ + +I + IG + L + F
Sbjct: 281 ACNRG----ISGEQLKDDWQALADAPVGEKIQ--IIYIGYNNL------KTFPVETSLQK 328
Query: 149 WKNLEFLTLDSNLLQGSLPNLPPH--MVQLSISNNSLTGEIPSSFCNLSS-IQYLYLSNN 205
K L L N L+G LP + L+++ N +T EIP++FC + ++ L ++N
Sbjct: 329 XKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387
Query: 206 SLSGQIPQCLGN---STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSL 262
L IP S +D N G++ G + + PL P+
Sbjct: 388 KLK-YIPNIFDAKSVSVXSAIDFSYNEI-GSV---------------DGKNFD-PLDPTP 429
Query: 263 SNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP--------ECLGNST 314
+N+ +++ NN +S E + LS +++ N L+ IP E N+
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLT-EIPKNSLKDENENFKNTY 488
Query: 315 SLSFLDVGNNSLSGPIPEYLGNS--TLEVLDMRMNKFSGSLPQTFGKSC-----VLVSLK 367
L+ +D+ N L+ ++ + L +D+ N FS Q S +
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD 548
Query: 368 LNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 419
GNR P + C L + +G+N I + + P + VL ++ N
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK---ITPNISVLDIKDN 597
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 93/246 (37%), Gaps = 51/246 (20%)
Query: 268 LQVLDVGNNNLSG-PIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSL 326
+Q++ +G NNL P+ L +L L+ N L G +P G+ L+ L++ N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365
Query: 327 SGPIPEYLG-NSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLE---------GP 376
+ + G +E L NK +P F V V ++ + E P
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDP 424
Query: 377 LPPSLVNCRHLEVIDVGNNQINETFPHWL--------------DVLPE------------ 410
L P+ ++ I++ NNQI++ FP L + L E
Sbjct: 425 LDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENEN 483
Query: 411 ------LQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQF----TGVLPIWYLNGFK 460
L + LR N+ + D P L IDLSYN F T L L GF
Sbjct: 484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFG 542
Query: 461 AMMRRD 466
+RD
Sbjct: 543 IRNQRD 548
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 412 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 471
QV TL+++R I L I+ S NQ T + P+ L ++ ++ +
Sbjct: 42 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 472 VNYMRSLNYSYYESISLTMKGN---DIQMERILTTFATIDLSSNRFQGEISEVLGKLNSL 528
+ + +L LT+ N DI + LT ++LSSN +IS + G L SL
Sbjct: 100 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 153
Query: 529 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 563
+ LN N +T P L NLT LE LD+SSNK++
Sbjct: 154 QQLNFG-NQVTDLKP--LANLTTLERLDISSNKVS 185
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 104/234 (44%), Gaps = 44/234 (18%)
Query: 5 LTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSN 64
LT L LN NQ+ P + L L + +S N S ++ AKL NL+ LI +N
Sbjct: 150 LTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLIATN 203
Query: 65 ISLSVSTKLTVNSSFPNLWALGLSACNISEFPDI--LKTQHQLDWLDLSENQIRGRIP-- 120
+S T L + NL L L N ++ DI L + L LDL+ NQI P
Sbjct: 204 NQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 257
Query: 121 ------------SWMWDI----GVHTLFRLDLSRNFLTSIDHLP-WKNLEFLTLDSNLLQ 163
+ + +I G+ L L+L+ N L I + KNL +LTL N
Sbjct: 258 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN--- 314
Query: 164 GSLPNLPP-----HMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIP 212
++ ++ P + +L SNN ++ SS NL++I +L +N +S P
Sbjct: 315 -NISDISPVSSLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 365
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 16/213 (7%)
Query: 191 FCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLS 250
NL++++ L +S+N +S I + LE+L N P NL L L+
Sbjct: 168 LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 224
Query: 251 GNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECL 310
GN L+ +L++ NL LD+ NN +S P L T+L+ L + N +S P L
Sbjct: 225 GNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 278
Query: 311 GNSTSLSFLDVGNNSLSGPIP-EYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLN 369
T+L+ L++ N L P L N L L + N S P L L +
Sbjct: 279 AGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP--VSSLTKLQRLFFS 334
Query: 370 GNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 402
N++ SL N ++ + G+NQI++ P
Sbjct: 335 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP 365
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 412 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 471
QV TL+++R I L I+ S NQ T + P+ L ++ ++ +
Sbjct: 42 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 472 VNYMRSLNYSYYESISLTMKGN---DIQMERILTTFATIDLSSNRFQGEISEVLGKLNSL 528
+ + +L LT+ N DI + LT ++LSSN +IS + G L SL
Sbjct: 100 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 153
Query: 529 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 563
+ LN N +T P L NLT LE LD+SSNK++
Sbjct: 154 QQLNFG-NQVTDLKP--LANLTTLERLDISSNKVS 185
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 16/213 (7%)
Query: 191 FCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLS 250
NL++++ L +S+N +S I + LE+L N P NL L L+
Sbjct: 168 LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 224
Query: 251 GNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECL 310
GN L+ +L++ NL LD+ NN +S P L T+L+ L + N +S P L
Sbjct: 225 GNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 278
Query: 311 GNSTSLSFLDVGNNSLSGPIP-EYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLN 369
T+L+ L++ N L P L N L L + N S P L L
Sbjct: 279 AGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP--VSSLTKLQRLFFY 334
Query: 370 GNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 402
N++ SL N ++ + G+NQI++ P
Sbjct: 335 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP 365
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 5 LTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNL 57
LT L++L L +NQL P I L NLT+++L FNN S + KL+ L
Sbjct: 281 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 331
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 103/234 (44%), Gaps = 44/234 (18%)
Query: 5 LTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSN 64
LT L LN NQ+ P + L L + +S N S ++ AKL NL+ LI +N
Sbjct: 150 LTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLIATN 203
Query: 65 ISLSVSTKLTVNSSFPNLWALGLSACNISEFPDI--LKTQHQLDWLDLSENQIRGRIP-- 120
+S T L + NL L L N ++ DI L + L LDL+ NQI P
Sbjct: 204 NQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 257
Query: 121 ------------SWMWDI----GVHTLFRLDLSRNFLTSIDHLP-WKNLEFLTLDSNLLQ 163
+ + +I G+ L L+L+ N L I + KNL +LTL N
Sbjct: 258 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN--- 314
Query: 164 GSLPNLPP-----HMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIP 212
++ ++ P + +L NN ++ SS NL++I +L +N +S P
Sbjct: 315 -NISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 365
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 172 HMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQ 231
+++ L + +N +T P NL+ I L LS N L + G +++ LDL
Sbjct: 70 NLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQIT 126
Query: 232 GTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTR 291
P A NL L L N + P L+ NLQ L +GNN ++ P L N ++
Sbjct: 127 DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSK 180
Query: 292 LSFLDVRNNNLSGPIP 307
L+ L +N +S P
Sbjct: 181 LTTLRADDNKISDISP 196
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
Query: 295 LDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLP 354
L++++N ++ P L N T ++ L++ N L + G +++ LD+ + + P
Sbjct: 74 LELKDNQITDLTP--LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQITDVTP 130
Query: 355 QTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVL 414
G S + V L L+ N++ P L +L+ + +GNNQ+N+ P L L +L L
Sbjct: 131 LA-GLSNLQV-LYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTL 184
Query: 415 TLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGF 459
N+ I D P L + L NQ + V P+ L+
Sbjct: 185 RADDNK----ISDISPLASLPNLIEVHLKDNQISDVSPLANLSNL 225
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 24/163 (14%)
Query: 48 LYDFAKLKNLKYLILSNISLSVS--TKLTVNSSFPNLWALGLSACNISEFPDILKTQHQL 105
LY F+ + Y L+ ++L + TKL V+ + P L L LS + P + +T L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 102
Query: 106 DWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGS 165
LD+S N++ + +G + L K E TL LL +
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLG---------------ELQELYLKGNELKTLPPGLLTPT 147
Query: 166 LPNLPPHMVQLSISNNSLTGEIPSSFCN-LSSIQYLYLSNNSL 207
P + +LS++NN+LT E+P+ N L ++ L L NSL
Sbjct: 148 -----PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 495 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 553
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 554 SLDLSSNKLAGRIP 567
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 148/370 (40%), Gaps = 59/370 (15%)
Query: 247 LRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPI 306
L LS N + L CVNLQ L + +N ++ + + L LD+ N LS
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 90
Query: 307 PECLGNSTSLSFLDVGNNSLS--GPIPEYLGNSTLEVLDM-RMNKFSGSLPQTFGKSCVL 363
+SL+FL++ N G + + L++L + M+ F+ + F L
Sbjct: 91 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 150
Query: 364 VSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF-- 421
L+++ + L+ P SL + +++ + + Q ++DV ++ L LR
Sbjct: 151 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 210
Query: 422 -------CGPIGDTKTRVPFPKLRIIDLS-------YNQFTGVLPIWY----LNGFKAMM 463
G + F ++I D S NQ +G+L + + LNG
Sbjct: 211 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFDDCTLNGVGNFR 270
Query: 464 RRDDN------SIEVNYMRSLN----YSYYE---SISLTMKGNDIQME------------ 498
D++ +E +R L+ Y +Y+ SLT + I +E
Sbjct: 271 ASDNDRVIDPGKVETLTIRRLHIPRFYLFYDLSTLYSLTERVKRITVENSKVFLVPCLLS 330
Query: 499 RILTTFATIDLSSNRFQGEI---SEVLGKLNSLKSLNISHNNL-----TGGIPSSLRNLT 550
+ L + +DLS N E S SL++L + N+L TG +L+NLT
Sbjct: 331 QHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLT 390
Query: 551 ELESLDLSSN 560
++D+S N
Sbjct: 391 ---NIDISKN 397
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 33/131 (25%)
Query: 150 KNLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLS- 208
K+LE+L L NL MV+ + N++ PS +Q L L N L+
Sbjct: 334 KSLEYLDLSENL-----------MVEEYLKNSACEDAWPS-------LQTLILRQNHLAS 375
Query: 209 ----GQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSN 264
G+ L N L N+D+ N+F ++P+T + YL LS + S++
Sbjct: 376 LEKTGETLLTLKN--LTNIDISKNSFH-SMPETCQWPEKMKYLNLSSTRIH-----SVTG 427
Query: 265 CV--NLQVLDV 273
C+ L++LDV
Sbjct: 428 CIPKTLEILDV 438
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 33/136 (24%)
Query: 150 KNLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSL-- 207
K+LEFL L NL MV+ + N++ G PS +Q L LS N L
Sbjct: 334 KSLEFLDLSENL-----------MVEEYLKNSACKGAWPS-------LQTLVLSQNHLRS 375
Query: 208 ---SGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSN 264
+G+I L N L +LD+ N F +P + + +L LS + +
Sbjct: 376 MQKTGEILLTLKN--LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-----VVKT 427
Query: 265 CV--NLQVLDVGNNNL 278
C+ L+VLDV NNNL
Sbjct: 428 CIPQTLEVLDVSNNNL 443
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 165 SLPN-LPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSN---NSLSGQIPQCLGNSTL 220
S+P+ L M L +S N +T +++Q L L + N++ G LG +L
Sbjct: 19 SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG--SL 76
Query: 221 ENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSL-SNCVNLQVLDVGN 275
E+LDL N+ + +L YL L GN + SL N NLQ L +GN
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 24/163 (14%)
Query: 48 LYDFAKLKNLKYLILSNISLSVS--TKLTVNSSFPNLWALGLSACNISEFPDILKTQHQL 105
LY F+ + Y L+ ++L + TKL V+ + P L L LS + P + +T L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 102
Query: 106 DWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGS 165
LD+S N++ + +G + L K E TL LL +
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLG---------------ELQELYLKGNELKTLPPGLLTPT 147
Query: 166 LPNLPPHMVQLSISNNSLTGEIPSSFCN-LSSIQYLYLSNNSL 207
P + +LS++NN+LT E+P+ N L ++ L L NSL
Sbjct: 148 -----PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 495 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 553
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 554 SLDLSSNKLAGRIP 567
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 290 TRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSG-PIPEYLGNSTLEVLDMRMNK 348
T+L++L++ N L + T L L + NN L+ P+ + + L+ L + N+
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 349 FSGSLPQ-TFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPH-WLD 406
SLP F + L L+LN N+L+ + +L+ + + NQ+ ++ PH D
Sbjct: 119 LK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFD 176
Query: 407 VLPELQVLTLRSNRF 421
L +LQ +TL N+F
Sbjct: 177 RLGKLQTITLFGNQF 191
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFE-LVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F LT+L L L NQL SIP+ F+ L NL +SLS N SV F +L L+
Sbjct: 126 VFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQT 183
Query: 60 LIL 62
+ L
Sbjct: 184 ITL 186
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFE-LVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F +LT+L +L LA+NQL S+P +F+ L L + L N S+ F +L LK
Sbjct: 78 VFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKE 135
Query: 60 LILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFP 96
L L+ L S NL L LS + P
Sbjct: 136 LRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVP 171
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 24/163 (14%)
Query: 48 LYDFAKLKNLKYLILSNISLSVS--TKLTVNSSFPNLWALGLSACNISEFPDILKTQHQL 105
LY F+ + Y L+ ++L + TKL V+ + P L L LS + P + +T L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 102
Query: 106 DWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGS 165
LD+S N++ + +G + L K E TL LL +
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLG---------------ELQELYLKGNELKTLPPGLLTPT 147
Query: 166 LPNLPPHMVQLSISNNSLTGEIPSSFCN-LSSIQYLYLSNNSL 207
P + +LS++NN+LT E+P+ N L ++ L L NSL
Sbjct: 148 -----PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 495 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 553
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 554 SLDLSSNKLAGRIP 567
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 290 TRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSG-PIPEYLGNSTLEVLDMRMNK 348
T+L++L++ N L + T L L + NN L+ P+ + + L+ L + N+
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 349 FSGSLPQ-TFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPH-WLD 406
SLP F + L L+LN N+L+ + +L+ + + NQ+ ++ PH D
Sbjct: 119 LK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFD 176
Query: 407 VLPELQVLTLRSNRF 421
L +LQ +TL N+F
Sbjct: 177 RLGKLQTITLFGNQF 191
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFE-LVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F LT+L L L NQL SIP+ F+ L NL +SLS N SV F +L L+
Sbjct: 126 VFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQT 183
Query: 60 LIL 62
+ L
Sbjct: 184 ITL 186
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFE-LVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F +LT+L +L LA+NQL S+P +F+ L L + L N S+ F +L LK
Sbjct: 78 VFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKE 135
Query: 60 LILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFP 96
L L+ L S NL L LS + P
Sbjct: 136 LRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVP 171
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 19/169 (11%)
Query: 411 LQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSI 470
++ L L+ +RF I T + F +L+ +DL+ G LP +G K + +
Sbjct: 253 VESLNLQEHRF-SDISSTTFQC-FTQLQELDLTATHLKG-LP----SGMKGLNLLKKLVL 305
Query: 471 EVNYMRSL---NYSYYESIS-LTMKGNDIQME------RILTTFATIDLSSNRFQGE--I 518
VN+ L + + + S++ L ++GN ++ L T+DLS N +
Sbjct: 306 SVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCC 365
Query: 519 SEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 567
S L L+ L++LN+SHN G + + +LE LDL+ +L P
Sbjct: 366 SLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAP 414
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 134/335 (40%), Gaps = 60/335 (17%)
Query: 189 SSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLR 248
++F + +Q L L+ L G G + L+ L L +N+F + A +LT+L
Sbjct: 269 TTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLY 328
Query: 249 LSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPE 308
+ GN V L VG CL L LD+ +N++
Sbjct: 329 IRGN-------------VKKLHLGVG----------CLEKLGNLQTLDLSHNDIEA---- 361
Query: 309 CLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKL 368
+ SL ++ S L+ L++ N+ G Q F + L L L
Sbjct: 362 --SDCCSLQLKNL---------------SHLQTLNLSHNEPLGLQSQAFKECPQLELLDL 404
Query: 369 NGNRLEGPLPPS-LVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFC-GPIG 426
RL P S N L+V+++ ++ + H L LP L+ L L+ N F G I
Sbjct: 405 AFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTIT 464
Query: 427 DTKTRVPFPKLRIIDLSYNQFTGVLPI----WYLNGFKAMMRRDDNSIEVNYMRSLNYSY 482
T L ++ LS G+L I ++ G + + NS+ + + SL S+
Sbjct: 465 KTNLLQTVGSLEVLILSS---CGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSL--SH 519
Query: 483 YESISLTMKGNDI-----QMERILTTFATIDLSSN 512
+ I L + N I ++ IL+ +TI+LS N
Sbjct: 520 LKGIYLNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 91/212 (42%), Gaps = 31/212 (14%)
Query: 4 NLTQLSSLNLADNQLIGSIPSSIF------ELVNLTFVSLSFNNFSGSVELYDFAKLKNL 57
NL+ L +LNL+ N+ +G + S F EL++L F L N + F ++ NL
Sbjct: 371 NLSHLQTLNLSHNEPLG-LQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL 429
Query: 58 KYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISE----FPDILKTQHQLDWLDLSEN 113
Y L ++ + + P L L L + + ++L+T L+ L LS
Sbjct: 430 TYCFLD------TSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSC 483
Query: 114 QIRGRIPSWMWDIGVHTLFRLDLSRNFLT--SIDHLPWKNLEFLTLDSNLLQGSLPNLPP 171
+ +G + +DLS N LT SID L +L L +N + P L P
Sbjct: 484 GLLSIDQQAFHSLG--KMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLP 541
Query: 172 HMVQ---LSISNNSLTGEIPSSFCNLSSIQYL 200
+ Q +++S+N L C S+I +L
Sbjct: 542 ILSQQSTINLSHNPLD-------CTCSNIHFL 566
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 24/163 (14%)
Query: 48 LYDFAKLKNLKYLILSNISLSVS--TKLTVNSSFPNLWALGLSACNISEFPDILKTQHQL 105
LY F+ + Y L+ ++L TKL V+ + P L L LS + P + +T L
Sbjct: 44 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 103
Query: 106 DWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGS 165
LD+S N++ + +G + L K E TL LL +
Sbjct: 104 TVLDVSFNRLTSLPLGALRGLG---------------ELQELYLKGNELKTLPPGLLTPT 148
Query: 166 LPNLPPHMVQLSISNNSLTGEIPSSFCN-LSSIQYLYLSNNSL 207
P + +LS++NN+LT E+P+ N L ++ L L NSL
Sbjct: 149 -----PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 495 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 553
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 71 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 128
Query: 554 SLDLSSNKLAGRIP 567
L L N+L P
Sbjct: 129 ELYLKGNELKTLPP 142
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 495 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 553
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 554 SLDLSSNKLAGRIP 567
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 24/163 (14%)
Query: 48 LYDFAKLKNLKYLILSNISLSVS--TKLTVNSSFPNLWALGLSACNISEFPDILKTQHQL 105
LY F+ + Y L+ ++L TKL V+ + P L L LS + P + +T L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 102
Query: 106 DWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGS 165
LD+S N++ + +G + L K E TL LL +
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLG---------------ELQELYLKGNELKTLPPGLLTPT 147
Query: 166 LPNLPPHMVQLSISNNSLTGEIPSSFCN-LSSIQYLYLSNNSL 207
P + +LS++NN LT E+P+ N L ++ L L NSL
Sbjct: 148 -----PKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 311 GNSTSLSFLDVGNNSLSGPIPEYLGNS--TLEVLDMRMNKFSGSLP----QTFGKSCVLV 364
G L LD+ +N L +P LG + L VLD+ N+ + SLP + G+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLT-SLPLGALRGLGE---LQ 127
Query: 365 SLKLNGNRLEGPLPPSLVN-CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 419
L L GN L+ LPP L+ LE + + NNQ+ E L+ L L L L+ N
Sbjct: 128 ELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 24/163 (14%)
Query: 48 LYDFAKLKNLKYLILSNISLSVS--TKLTVNSSFPNLWALGLSACNISEFPDILKTQHQL 105
LY F+ + Y L+ ++L TKL V+ + P L L LS + P + +T L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 102
Query: 106 DWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGS 165
LD+S N++ + +G + L K E TL LL +
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLG---------------ELQELYLKGNELKTLPPGLLTPT 147
Query: 166 LPNLPPHMVQLSISNNSLTGEIPSSFCN-LSSIQYLYLSNNSL 207
P + +LS++NN LT E+P+ N L ++ L L NSL
Sbjct: 148 -----PKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 495 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 553
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 554 SLDLSSNKLAGRIP 567
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 311 GNSTSLSFLDVGNNSLSGPIPEYLGNS--TLEVLDMRMNKFSGSLP----QTFGKSCVLV 364
G L LD+ +N L +P LG + L VLD+ N+ + SLP + G+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLT-SLPLGALRGLGE---LQ 127
Query: 365 SLKLNGNRLEGPLPPSLVN-CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 419
L L GN L+ LPP L+ LE + + NNQ+ E L+ L L L L+ N
Sbjct: 128 ELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 172 HMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQ 231
+++ L + +N +T P NL+ I L LS N L + G +++ LDL
Sbjct: 64 NLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQIT 120
Query: 232 GTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTR 291
P A NL L L N + P L+ NLQ L +GN +S P L N ++
Sbjct: 121 DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK 174
Query: 292 LSFLDVRNNNLS 303
L+ L +N +S
Sbjct: 175 LTTLKADDNKIS 186
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 171 PHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN--STLENLDLGMN 228
P++ L++ N L S+ L+++ YL L+ N L +P + + + L+ L L N
Sbjct: 63 PNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVEN 119
Query: 229 NFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGN 288
Q + K NLTYL L N L+ NL LD+ NN L +PE + +
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFD 178
Query: 289 S-TRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNN 324
T+L L + +N L TSL+ + + NN
Sbjct: 179 KLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFE-LVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F LT L L L +NQL S+P +F+ L NLT++ L N S+ F KL NL
Sbjct: 104 VFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTR 161
Query: 60 LILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPD 97
L L N L S V L L L+ + PD
Sbjct: 162 LDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 243 NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNL 302
NLTYL L+GN L+ NL+ L + N L T L++L + +N L
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL 145
Query: 303 SGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMN 347
T+L+ LD+ NN L +PE + + ++ + +N
Sbjct: 146 QSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLN 189
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 15/171 (8%)
Query: 397 INETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYL 456
I + FP D E T+++N + D T+ + I + + V I YL
Sbjct: 9 IKQIFPD--DAFAE----TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL 62
Query: 457 NGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQ-----MERILTTFATIDLSS 511
+ + + +++ ++ L Y L + GN +Q + LT + L
Sbjct: 63 PNVRYLALGGNKLHDISALKELTNLTY----LILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 512 NRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 562
N+ Q V KL +L L + HN L LT L LDL +N+L
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFE-LVNLTFVSL 37
+F LTQL L+L DNQL S+P +F+ L +LT + L
Sbjct: 176 VFDKLTQLKQLSLNDNQL-KSVPDGVFDRLTSLTHIWL 212
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 495 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 553
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 554 SLDLSSNKLAGRIP 567
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 24/163 (14%)
Query: 48 LYDFAKLKNLKYLILSNISLSVS--TKLTVNSSFPNLWALGLSACNISEFPDILKTQHQL 105
LY F+ + Y L+ ++L TKL V+ + P L L LS + P + +T L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 102
Query: 106 DWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGS 165
LD+S N++ + +G + L K E TL LL +
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLG---------------ELQELYLKGNELKTLPPGLLTPT 147
Query: 166 LPNLPPHMVQLSISNNSLTGEIPSSFCN-LSSIQYLYLSNNSL 207
P + +LS++NN LT E+P+ N L ++ L L NSL
Sbjct: 148 -----PKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 311 GNSTSLSFLDVGNNSLSGPIPEYLGNS--TLEVLDMRMNKFSGSLP----QTFGKSCVLV 364
G L LD+ +N L +P LG + L VLD+ N+ + SLP + G+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLT-SLPLGALRGLGE---LQ 127
Query: 365 SLKLNGNRLEGPLPPSLVN-CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 419
L L GN L+ LPP L+ LE + + NNQ+ E L+ L L L L+ N
Sbjct: 128 ELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 24/163 (14%)
Query: 48 LYDFAKLKNLKYLILSNISLSVS--TKLTVNSSFPNLWALGLSACNISEFPDILKTQHQL 105
LY F+ + Y L+ ++L TKL V+ + P L L LS + P + +T L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 102
Query: 106 DWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGS 165
LD+S N++ + +G + L K E TL LL +
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLG---------------ELQELYLKGNELKTLPPGLLTPT 147
Query: 166 LPNLPPHMVQLSISNNSLTGEIPSSFCN-LSSIQYLYLSNNSL 207
P + +LS++NN LT E+P+ N L ++ L L NSL
Sbjct: 148 -----PKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 495 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 553
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 554 SLDLSSNKLAGRIP 567
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 311 GNSTSLSFLDVGNNSLSGPIPEYLGNS--TLEVLDMRMNKFSGSLP----QTFGKSCVLV 364
G L LD+ +N L +P LG + L VLD+ N+ + SLP + G+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLT-SLPLGALRGLGE---LQ 127
Query: 365 SLKLNGNRLEGPLPPSLVN-CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 419
L L GN L+ LPP L+ LE + + NNQ+ E L+ L L L L+ N
Sbjct: 128 ELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 495 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 553
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 554 SLDLSSNKLAGRIP 567
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 24/163 (14%)
Query: 48 LYDFAKLKNLKYLILSNISLSVS--TKLTVNSSFPNLWALGLSACNISEFPDILKTQHQL 105
LY F+ + Y L+ ++L TKL V+ + P L L LS + P + +T L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 102
Query: 106 DWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGS 165
LD+S N++ + +G + L K E TL LL +
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLG---------------ELQELYLKGNELKTLPPGLLTPT 147
Query: 166 LPNLPPHMVQLSISNNSLTGEIPSSFCN-LSSIQYLYLSNNSL 207
P + +LS++NN LT E+P+ N L ++ L L NSL
Sbjct: 148 -----PKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 24/163 (14%)
Query: 48 LYDFAKLKNLKYLILSNISLSVS--TKLTVNSSFPNLWALGLSACNISEFPDILKTQHQL 105
LY F+ + Y L+ ++L TKL V+ + P L L LS + P + +T L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 102
Query: 106 DWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGS 165
LD+S N++ + +G + L K E TL LL +
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLG---------------ELQELYLKGNELKTLPPGLLTPT 147
Query: 166 LPNLPPHMVQLSISNNSLTGEIPSSFCN-LSSIQYLYLSNNSL 207
P + +LS++NN+LT E+P+ N L ++ L L NSL
Sbjct: 148 -----PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 495 IQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKSLNISHNNLTGGIPSSLRNLTELE 553
+Q++ L T+DLS N+ Q +LG+ L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 554 SLDLSSNKLAGRIP 567
L L N+L P
Sbjct: 128 ELYLKGNELKTLPP 141
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 109/264 (41%), Gaps = 25/264 (9%)
Query: 205 NSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLS-GNHLEGPLPPSL- 262
NS ++P L +S + L +N+ Q TYA T +L G + LPP +
Sbjct: 60 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119
Query: 263 SNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVG 322
N L VL + N+LS N+ +L+ L + NNNL + +TSL L +
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179
Query: 323 NNSLSGP----IPE-YLGNSTLEVLDM--------RMNKFSGSLPQTFGKSCV-LVSLKL 368
+N L+ IP + N + +L ++ S+ G V L LKL
Sbjct: 180 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKL 239
Query: 369 NGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCG--PIG 426
N L L+N L +D+ N++ + H + L+ L + +NR G
Sbjct: 240 QHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG 297
Query: 427 DTKTRVPFPKLRIIDLSYNQFTGV 450
P P L+++DLS+N V
Sbjct: 298 Q-----PIPTLKVLDLSHNHLLHV 316
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 108/266 (40%), Gaps = 52/266 (19%)
Query: 307 PECLGNSTSLSFLDVGNNSLSGPIPEYLGNST--LEVLDMRMNKFSGSLPQTFGKSCVLV 364
P N L+ L + N LS +P + ++T L L M N TF + L
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 365 SLKLNGNRL---EGPLPPSLVNCR-------------HLEVIDVGNNQINETF-PHWLDV 407
+L+L+ NRL + L PSL + +E +D +N IN P V
Sbjct: 175 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP----V 230
Query: 408 LPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDD 467
EL +L L+ N + DT + +P L +DLSYN+ ++ + F M R +
Sbjct: 231 NVELTILKLQHNN----LTDTAWLLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLER 282
Query: 468 NSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNS 527
I N + ++L + G I T +DLS N + + +
Sbjct: 283 LYISNNRL----------VALNLYGQPI------PTLKVLDLSHNHL-LHVERNQPQFDR 325
Query: 528 LKSLNISHNNLTG---GIPSSLRNLT 550
L++L + HN++ +L+NLT
Sbjct: 326 LENLYLDHNSIVTLKLSTHHTLKNLT 351
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 114/265 (43%), Gaps = 57/265 (21%)
Query: 98 ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLP---WKNLEF 154
+L + Q++ L+L++ QI I ++ + HT+ +L + N +I +LP ++N+
Sbjct: 70 LLDSFRQVELLNLNDLQIE-EIDTYAFAYA-HTIQKLYMGFN---AIRYLPPHVFQNVPL 124
Query: 155 LT---LDSNLLQGSLP----NLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSL 207
LT L+ N L SLP + P + LS+SNN+L +F +S+Q L LS+N L
Sbjct: 125 LTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 208 S----GQIPQCLGN-------STL------ENLDLGMNNF---QGTIPQTYAKGCNLTYL 247
+ IP STL E LD N+ +G + LT L
Sbjct: 184 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV------NVELTIL 237
Query: 248 RLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSG--- 304
+L N+L L N L +D+ N L + RL L + NN L
Sbjct: 238 KLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 295
Query: 305 ---PIPECLGNSTSLSFLDVGNNSL 326
PIP +L LD+ +N L
Sbjct: 296 YGQPIP-------TLKVLDLSHNHL 313
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 126/556 (22%), Positives = 210/556 (37%), Gaps = 114/556 (20%)
Query: 74 TVNSSFPNLWALGLSACNISEF-PDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLF 132
T S NL L L+ C I D ++QH+LD L L+ N + + + G L
Sbjct: 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS--GPKALK 108
Query: 133 RLDLSRNFLTSIDHLPWKN---LEFLTLDSNLLQG-SLPN-LPPHMVQ------------ 175
L + ++SID +P N LE L L SN + LP P ++
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168
Query: 176 ---------------LSISNNSLTGEIPSSFCNL----------------------SSIQ 198
L+++ N + G P +F + S+IQ
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228
Query: 199 YLYL------SNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGN 252
L+L + +S + + L ++E+++L + F T+ L L L+
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288
Query: 253 HLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPE-CLG 311
HL LP L L+ L + N N L+ L ++ N + CL
Sbjct: 289 HL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347
Query: 312 NSTSLSFLDVGNNSL--SGPIPEYLGN-STLEVLDMRMNKFSGSLPQTFGKSCVLVSLKL 368
N +L LD+ ++ + S L N S L+ L++ N+ + F + L L L
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407
Query: 369 NGNRLEGPLPPS-LVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF-CGPIG 426
RL+ S N L+V+++ ++ ++ + D LP LQ L L+ N F G I
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467
Query: 427 DTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESI 486
T + +L I+ LS+ D +SI+ + SL +
Sbjct: 468 KTNSLQTLGRLEILVLSF--------------------CDLSSIDQHAFTSLKMMNH--- 504
Query: 487 SLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSL 546
+DLS NR E L L + LN++ N+++ +PS L
Sbjct: 505 --------------------VDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLL 543
Query: 547 RNLTELESLDLSSNKL 562
L++ +++L N L
Sbjct: 544 PILSQQRTINLRQNPL 559
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 470 IEVNYMRSL-NYSYYESISLT---MKGNDIQ-----MERILTTFATIDLSSNRFQGEISE 520
+E N ++SL N + E SLT + GN +Q + LT+ ++LS+N+ Q +
Sbjct: 35 LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94
Query: 521 VLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 562
V KL LK L ++ N L LT+L+ L L N+L
Sbjct: 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIF-ELVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F LT L+ L L N+L S+P+ +F +L +LT+++LS N S+ F KL LK
Sbjct: 47 VFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKE 104
Query: 60 LIL 62
L L
Sbjct: 105 LAL 107
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 6/156 (3%)
Query: 172 HMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQ 231
H+ L + NN ++ +F L +Q LY+S N L +IP L +S +E L + N +
Sbjct: 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVE-LRIHDNRIR 136
Query: 232 GTIPQTYAKGCNLTYLRLSGNHLEGP-LPPSLSNCVNLQVLDVGNNNLSGPIPECLGNST 290
++ N+ + + GN LE P + + L L + L+G IP+ L +
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPET- 194
Query: 291 RLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSL 326
L+ L + +N + E L + L L +G+N +
Sbjct: 195 -LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 19/228 (8%)
Query: 247 LRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPI 306
L LS N + L CVNLQ L + +N ++ + + L LD+ N LS
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 307 PECLGNSTSLSFLDVGNNSLS--GPIPEYLGNSTLEVLDM-RMNKFSGSLPQTFGKSCVL 363
+SL+FL++ N G + + L++L + M+ F+ + F L
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176
Query: 364 VSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLR------ 417
L+++ + L+ P SL + +++ + + Q ++DV ++ L LR
Sbjct: 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236
Query: 418 ---SNRFCGPIGDTKTRVPFPKLRIIDLS-------YNQFTGVLPIWY 455
S G + F ++I D S NQ +G+L + +
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 412 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 471
QV TL+++R I L I+ S NQ T + P+ L ++ ++ +
Sbjct: 46 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 103
Query: 472 VNYMRSLNYSYYESISLTMKGN---DIQMERILTTFATIDLSSNRFQGEISEVLGKLNSL 528
+ + +L LT+ N DI + LT ++LSSN +IS + G L SL
Sbjct: 104 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 157
Query: 529 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 563
+ L+ N +T P L NLT LE LD+SSNK++
Sbjct: 158 QQLSFG-NQVTDLKP--LANLTTLERLDISSNKVS 189
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 120/276 (43%), Gaps = 23/276 (8%)
Query: 131 LFRLDLSRNFLTSIDHLP-WKNLEFLTLDSNLLQ--GSLPNLPPHMVQLSISNNSLTGEI 187
L L L N +T ID L NL L L SN + +L L + QLS N +T
Sbjct: 113 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SLQQLSFGN-QVTDLK 170
Query: 188 PSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYL 247
P NL++++ L +S+N +S I + LE+L N P NL L
Sbjct: 171 P--LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 225
Query: 248 RLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP 307
L+GN L+ +L++ NL LD+ NN +S P L T+L+ L + N +S P
Sbjct: 226 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 281
Query: 308 ECLGNSTSLSFLDVGNNSLSGPIP-EYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSL 366
L T+L+ L++ N L P L N L L + N S P L L
Sbjct: 282 --LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP--VSSLTKLQRL 335
Query: 367 KLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 402
N++ SL N ++ + G+NQI++ P
Sbjct: 336 FFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 369
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 38/188 (20%)
Query: 51 FAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDI--LKTQHQLDWL 108
AKL NL+ LI +N +S T L + NL L L N ++ DI L + L L
Sbjct: 194 LAKLTNLESLIATNNQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDL 247
Query: 109 DLSENQIRGRIP--------------SWMWDI----GVHTLFRLDLSRNFLTSIDHLP-W 149
DL+ NQI P + + +I G+ L L+L+ N L I +
Sbjct: 248 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 307
Query: 150 KNLEFLTLDSNLLQGSLPNLPP-----HMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSN 204
KNL +LTL N ++ ++ P + +L +NN ++ SS NL++I +L +
Sbjct: 308 KNLTYLTLYFN----NISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 361
Query: 205 NSLSGQIP 212
N +S P
Sbjct: 362 NQISDLTP 369
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 5 LTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
LT L++L L +NQL P I L NLT+++L FNN S + KL+ L +
Sbjct: 285 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 337
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 412 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 471
QV TL+++R I L I+ S NQ T + P+ L ++ ++ +
Sbjct: 47 QVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 104
Query: 472 VNYMRSLNYSYYESISLTMKGN---DIQMERILTTFATIDLSSNRFQGEISEVLGKLNSL 528
+ + +L LT+ N DI + LT ++LSSN +IS + G L SL
Sbjct: 105 ITPLANL----TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSG-LTSL 158
Query: 529 KSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 563
+ L+ N +T P L NLT LE LD+SSNK++
Sbjct: 159 QQLSFG-NQVTDLKP--LANLTTLERLDISSNKVS 190
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 120/276 (43%), Gaps = 23/276 (8%)
Query: 131 LFRLDLSRNFLTSIDHLP-WKNLEFLTLDSNLLQ--GSLPNLPPHMVQLSISNNSLTGEI 187
L L L N +T ID L NL L L SN + +L L + QLS N +T
Sbjct: 114 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SLQQLSFGN-QVTDLK 171
Query: 188 PSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYL 247
P NL++++ L +S+N +S I + LE+L N P NL L
Sbjct: 172 P--LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226
Query: 248 RLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP 307
L+GN L+ +L++ NL LD+ NN +S P L T+L+ L + N +S P
Sbjct: 227 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282
Query: 308 ECLGNSTSLSFLDVGNNSLSGPIP-EYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSL 366
L T+L+ L++ N L P L N L L + N S P L L
Sbjct: 283 --LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP--VSSLTKLQRL 336
Query: 367 KLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 402
N++ SL N ++ + G+NQI++ P
Sbjct: 337 FFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 5 LTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
LT L++L L +NQL P I L NLT+++L FNN S + KL+ L +
Sbjct: 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 338
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 38/188 (20%)
Query: 51 FAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDI--LKTQHQLDWL 108
AKL NL+ LI +N +S T L + NL L L N ++ DI L + L L
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGI---LTNLDELSL---NGNQLKDIGTLASLTNLTDL 248
Query: 109 DLSENQIRGRIP--------------SWMWDI----GVHTLFRLDLSRNFLTSIDHLP-W 149
DL+ NQI P + + +I G+ L L+L+ N L I +
Sbjct: 249 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 308
Query: 150 KNLEFLTLDSNLLQGSLPNLPP-----HMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSN 204
KNL +LTL N ++ ++ P + +L NN ++ SS NL++I +L +
Sbjct: 309 KNLTYLTLYFN----NISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGH 362
Query: 205 NSLSGQIP 212
N +S P
Sbjct: 363 NQISDLTP 370
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 134 LDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTG--EIPSSF 191
L++++N L S+ LP +LE+L N L +LP LP + L + NN LT E+P
Sbjct: 85 LEITQNALISLPELP-ASLEYLDACDNRL-STLPELPASLKHLDVDNNQLTXLPELP--- 139
Query: 192 CNLSSIQYLYLSNNSLSG--QIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRL 249
+ ++Y+ NN L+ ++P L ++ N L F +P++ L L +
Sbjct: 140 ---ALLEYINADNNQLTXLPELPTSLEVLSVRNNQL---TFLPELPES------LEALDV 187
Query: 250 SGNHLEG--PLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP 307
S N LE +P + ++ N IPE + + + + +N LS I
Sbjct: 188 STNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247
Query: 308 ECLGNSTS 315
E L T+
Sbjct: 248 ESLSQQTA 255
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 58/212 (27%)
Query: 164 GSLP-NLPPHMVQLSISNNSLTG--EIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTL 220
SLP NLPP + L I+ N+L E+P +S++YL +N LS
Sbjct: 72 SSLPDNLPPQITVLEITQNALISLPELP------ASLEYLDACDNRLS------------ 113
Query: 221 ENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEG-PLPPSLSNCVNLQVLDVGNNNLS 279
T+P+ A +L +L + N L P P+L L+ ++ NN L+
Sbjct: 114 ------------TLPELPA---SLKHLDVDNNQLTXLPELPAL-----LEYINADNNQLT 153
Query: 280 GPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSG----PIPEYLG 335
+PE T L L VRNN L+ +PE SL LDV N L P+ +
Sbjct: 154 X-LPEL---PTSLEVLSVRNNQLTF-LPEL---PESLEALDVSTNLLESLPAVPVRNHHS 205
Query: 336 NSTLEVLDMRMNKFSGSLPQ---TFGKSCVLV 364
T R N+ + +P+ + +C ++
Sbjct: 206 EETEIFFRCRENRITH-IPENILSLDPTCTII 236
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 88/219 (40%), Gaps = 66/219 (30%)
Query: 222 NLDLGMNNFQGTIPQTYA--------------------------KGC------NLTYLRL 249
N L N+F TI TYA K C L RL
Sbjct: 10 NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL 69
Query: 250 SGNHLEGPLPPSLSNC--------------VNLQVLDVGNNNLSGPIPECLGNSTRLSFL 295
+ + L LPP ++ +L+ LD +N LS +PE + L L
Sbjct: 70 NLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLST-LPELPAS---LKHL 125
Query: 296 DVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNK--FSGSL 353
DV NN L+ +PE L +++ NN L+ +PE ++LEVL +R N+ F L
Sbjct: 126 DVDNNQLTX-LPEL---PALLEYINADNNQLTX-LPEL--PTSLEVLSVRNNQLTFLPEL 178
Query: 354 PQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDV 392
P++ L +L ++ N LE LP V H E ++
Sbjct: 179 PES------LEALDVSTNLLES-LPAVPVRNHHSEETEI 210
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 85/216 (39%), Gaps = 32/216 (14%)
Query: 166 LPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNS------------LSGQIPQ 213
+P LP H+ + +S NS+ +SF L +Q+L + + LS I
Sbjct: 25 VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84
Query: 214 CLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDV 273
L + L+ G N + CNL LSGN + PL +L++L +
Sbjct: 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK-PL-------TSLEMLVL 136
Query: 274 GNNNLSGPIPECLG-NSTRLSFLDVRNNNLSGPIPECLGN--STSLSFLDVGNNSLSGPI 330
+NN+ P N R LD+ N + E L N + L + + +L
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196
Query: 331 PEYLG---------NSTLEVLDMRMNKFSGSLPQTF 357
+LG N+++ LD+ N F S+ + F
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 96/430 (22%), Positives = 166/430 (38%), Gaps = 84/430 (19%)
Query: 208 SGQIPQCL---GNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSN 264
+G P+C GN T +LG+ T+P T L S N L + S
Sbjct: 1 AGSDPKCTEKEGNRTYNCENLGLREIPDTLPNTTE------VLEFSFNFLPTIQNTTFSR 54
Query: 265 CVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNN--------NLSGP----------- 305
+NL LD+ ++ + + +L+ + + N +L+GP
Sbjct: 55 LINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQT 114
Query: 306 -------IPECLGNSTSLSFLDVGNNSLSG-PIPEYLGNSTLEVLDMRMN-------KFS 350
IP + N +L L +G+N +S +PE L+VLD + N K +
Sbjct: 115 GISNLEFIP--VHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDT 172
Query: 351 GSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNN----------QINET 400
SL Q +SL NGN ++G P + ++ + + + G + Q +
Sbjct: 173 NSLEQATN-----LSLNFNGNDIKGIEPGAFIS-KIFQSLKFGGSLNLFIIFKGLQNSTL 226
Query: 401 FPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLS---YNQFTGV----LPI 453
WL + L S F G + + K R DLS + FT V L
Sbjct: 227 QSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTA 286
Query: 454 WYLNGF-------KAMMRRDDNSIEVNYMRSLNYSYYESI-SLTMKGNDIQME------R 499
+LNG ++ + N+ + + +N + + S+ L +KGN +++
Sbjct: 287 AHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLE 346
Query: 500 ILTTFATIDLSSNRFQGE--ISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDL 557
L +DLS + + + L L L+ LN+S+N G + + +LE LD+
Sbjct: 347 KLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDV 406
Query: 558 SSNKLAGRIP 567
+ L + P
Sbjct: 407 AFTHLHVKAP 416
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFE-LVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F LTQL+ L+L +NQL +P+ +F+ L LT +SL+ N S+ F LK+L +
Sbjct: 57 VFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTH 114
Query: 60 LILSN 64
+ L N
Sbjct: 115 IWLLN 119
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFE-LVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F LTQL+ L+L+ NQ I S+P +F+ L LT + L N S+ F KL LK
Sbjct: 47 VFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKE 104
Query: 60 LIL 62
L L
Sbjct: 105 LAL 107
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFE-LVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F LTQL+ L+L +NQL +P+ +F+ L LT +SL+ N S+ F LK+L +
Sbjct: 49 VFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTH 106
Query: 60 LILSN 64
+ L N
Sbjct: 107 IWLLN 111
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 139 NFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTG--EIPSSFCNL 194
N LTS+ LP L L + N L SLP LPP +++LSI +N LT +PS C L
Sbjct: 71 NNLTSLPALP-PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKL 126
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 1 MFTNLTQLSSLNLADNQLIGSIPSSIFE-LVNLTFVSLSFNNFSGSVELYDFAKLKNLKY 59
+F LTQL+ L+L +NQL +P+ +F+ L LT +SL+ N S+ F L++L +
Sbjct: 49 VFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLRSLTH 106
Query: 60 LILSN 64
+ L N
Sbjct: 107 IWLLN 111
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 93/238 (39%), Gaps = 30/238 (12%)
Query: 243 NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNL 302
N+T L L+ N L + + L LDVG N +S PE L L++++N L
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 303 SGPIPECLGNSTSLSFLDVGNNSLSGPIPE-YLGNSTLEVLDMRMNKFSGSLPQTFGKSC 361
S + T+L+ L + +NS+ ++ L LD+ N S + T +
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 150
Query: 362 VLVSLKLNGNRLEGPLPPSL--VNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLR-- 417
L L L+ N+++ L L+ +++ +NQI E P + L L L
Sbjct: 151 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 210
Query: 418 ------SNRFCGPIGDTKTR-------------------VPFPKLRIIDLSYNQFTGV 450
+ + C + +T R + + L ++DLSYN V
Sbjct: 211 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 268
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 98/411 (23%), Positives = 160/411 (38%), Gaps = 44/411 (10%)
Query: 182 SLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQC---LGNSTLENLDLGMNNFQGTIPQTY 238
SLT ++ N +SI+ L LSN+ LS L + L LDL NN ++
Sbjct: 215 SLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 273
Query: 239 AKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPI-----PECLGNSTR-- 291
A L Y L N+++ SL N++ L++ + I P+ S +
Sbjct: 274 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 333
Query: 292 --LSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNN-----SLSGPIPEYLGNSTLEVLDM 344
L L++ +N++ G +L +L + N+ +L+ L +S L +L++
Sbjct: 334 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 393
Query: 345 RMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLE---VIDVGNNQINETF 401
NK S F L L L N + L R LE I + N+ +
Sbjct: 394 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ--EWRGLENIFEIYLSYNKYLQLT 451
Query: 402 PHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYN--------QFTGVLPI 453
+ ++P LQ L LR P L I+DLS N G+ +
Sbjct: 452 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 511
Query: 454 WYL----NGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGND---IQMERILTTFAT 506
L N + + + + +++ L S+ ++L G D +++ + L
Sbjct: 512 EILDLQHNNLARLWKHANPGGPIYFLKGL--SHLHILNLESNGFDEIPVEVFKDLFELKI 569
Query: 507 IDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPS----SLRNLTELE 553
IDL N + V SLKSLN+ N +T + RNLTEL+
Sbjct: 570 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 620
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 170/391 (43%), Gaps = 43/391 (10%)
Query: 6 TQLSSLNLADNQLIGSIPSSIFEL--VNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILS 63
T + +L+L+++QL + ++ L NLT + LS+NN V FA L L+Y L
Sbjct: 227 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLE 285
Query: 64 --NISLSVSTKLT--VNSSFPNL-WALGLSACNISEFPDILKTQHQ----LDWLDLSENQ 114
NI S L N + NL + + +++ P I Q L+ L++ +N
Sbjct: 286 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 345
Query: 115 IRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMV 174
I G I S M+ G+ L L LS +F TS+ L N F+ SL + P H+
Sbjct: 346 IPG-IKSNMF-TGLINLKYLSLSNSF-TSLRTLT--NETFV---------SLAHSPLHI- 390
Query: 175 QLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIP--QCLGNSTLENLDLGMNNFQG 232
L+++ N ++ +F L ++ L L N + ++ + G + + L N +
Sbjct: 391 -LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 449
Query: 233 TIPQTYAKGCNLTYLRLSGNHLEG--PLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNST 290
++A +L L L L+ P NL +LD+ NNN++ + L
Sbjct: 450 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 509
Query: 291 RLSFLDVRNNNLS---------GPIPECLGNSTSLSFLDVGNNSLSG-PIPEYLGNSTLE 340
+L LD+++NNL+ GPI G S L L++ +N P+ + L+
Sbjct: 510 KLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELK 568
Query: 341 VLDMRMNKFSGSLPQTFGKSCVLVSLKLNGN 371
++D+ +N + F L SL L N
Sbjct: 569 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 599
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 93/238 (39%), Gaps = 30/238 (12%)
Query: 243 NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNL 302
N+T L L+ N L + + L LDVG N +S PE L L++++N L
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 303 SGPIPECLGNSTSLSFLDVGNNSLSGPIPE-YLGNSTLEVLDMRMNKFSGSLPQTFGKSC 361
S + T+L+ L + +NS+ ++ L LD+ N S + T +
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145
Query: 362 VLVSLKLNGNRLEGPLPPSL--VNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLR-- 417
L L L+ N+++ L L+ +++ +NQI E P + L L L
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205
Query: 418 ------SNRFCGPIGDTKTR-------------------VPFPKLRIIDLSYNQFTGV 450
+ + C + +T R + + L ++DLSYN V
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 98/411 (23%), Positives = 160/411 (38%), Gaps = 44/411 (10%)
Query: 182 SLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQC---LGNSTLENLDLGMNNFQGTIPQTY 238
SLT ++ N +SI+ L LSN+ LS L + L LDL NN ++
Sbjct: 210 SLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268
Query: 239 AKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPI-----PECLGNSTR-- 291
A L Y L N+++ SL N++ L++ + I P+ S +
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328
Query: 292 --LSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNN-----SLSGPIPEYLGNSTLEVLDM 344
L L++ +N++ G +L +L + N+ +L+ L +S L +L++
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388
Query: 345 RMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLE---VIDVGNNQINETF 401
NK S F L L L N + L R LE I + N+ +
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ--EWRGLENIFEIYLSYNKYLQLT 446
Query: 402 PHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYN--------QFTGVLPI 453
+ ++P LQ L LR P L I+DLS N G+ +
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506
Query: 454 WYL----NGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGND---IQMERILTTFAT 506
L N + + + + +++ L S+ ++L G D +++ + L
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGL--SHLHILNLESNGFDEIPVEVFKDLFELKI 564
Query: 507 IDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPS----SLRNLTELE 553
IDL N + V SLKSLN+ N +T + RNLTEL+
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 170/391 (43%), Gaps = 43/391 (10%)
Query: 6 TQLSSLNLADNQLIGSIPSSIFEL--VNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILS 63
T + +L+L+++QL + ++ L NLT + LS+NN V FA L L+Y L
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLE 280
Query: 64 --NISLSVSTKLT--VNSSFPNL-WALGLSACNISEFPDILKTQHQ----LDWLDLSENQ 114
NI S L N + NL + + +++ P I Q L+ L++ +N
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340
Query: 115 IRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMV 174
I G I S M+ G+ L L LS +F TS+ L N F+ SL + P H+
Sbjct: 341 IPG-IKSNMF-TGLINLKYLSLSNSF-TSLRTLT--NETFV---------SLAHSPLHI- 385
Query: 175 QLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIP--QCLGNSTLENLDLGMNNFQG 232
L+++ N ++ +F L ++ L L N + ++ + G + + L N +
Sbjct: 386 -LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444
Query: 233 TIPQTYAKGCNLTYLRLSGNHLEG--PLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNST 290
++A +L L L L+ P NL +LD+ NNN++ + L
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504
Query: 291 RLSFLDVRNNNLS---------GPIPECLGNSTSLSFLDVGNNSLSG-PIPEYLGNSTLE 340
+L LD+++NNL+ GPI G S L L++ +N P+ + L+
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELK 563
Query: 341 VLDMRMNKFSGSLPQTFGKSCVLVSLKLNGN 371
++D+ +N + F L SL L N
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 93/238 (39%), Gaps = 30/238 (12%)
Query: 243 NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNL 302
N+T L L+ N L + + L LDVG N +S PE L L++++N L
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 303 SGPIPECLGNSTSLSFLDVGNNSLSGPIPE-YLGNSTLEVLDMRMNKFSGSLPQTFGKSC 361
S + T+L+ L + +NS+ ++ L LD+ N S + T +
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 155
Query: 362 VLVSLKLNGNRLEGPLPPSL--VNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLR-- 417
L L L+ N+++ L L+ +++ +NQI E P + L L L
Sbjct: 156 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 215
Query: 418 ------SNRFCGPIGDTKTR-------------------VPFPKLRIIDLSYNQFTGV 450
+ + C + +T R + + L ++DLSYN V
Sbjct: 216 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 273
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 98/411 (23%), Positives = 160/411 (38%), Gaps = 44/411 (10%)
Query: 182 SLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQC---LGNSTLENLDLGMNNFQGTIPQTY 238
SLT ++ N +SI+ L LSN+ LS L + L LDL NN ++
Sbjct: 220 SLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 278
Query: 239 AKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPI-----PECLGNSTR-- 291
A L Y L N+++ SL N++ L++ + I P+ S +
Sbjct: 279 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 338
Query: 292 --LSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNN-----SLSGPIPEYLGNSTLEVLDM 344
L L++ +N++ G +L +L + N+ +L+ L +S L +L++
Sbjct: 339 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 398
Query: 345 RMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLE---VIDVGNNQINETF 401
NK S F L L L N + L R LE I + N+ +
Sbjct: 399 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ--EWRGLENIFEIYLSYNKYLQLT 456
Query: 402 PHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYN--------QFTGVLPI 453
+ ++P LQ L LR P L I+DLS N G+ +
Sbjct: 457 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 516
Query: 454 WYL----NGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGND---IQMERILTTFAT 506
L N + + + + +++ L S+ ++L G D +++ + L
Sbjct: 517 EILDLQHNNLARLWKHANPGGPIYFLKGL--SHLHILNLESNGFDEIPVEVFKDLFELKI 574
Query: 507 IDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPS----SLRNLTELE 553
IDL N + V SLKSLN+ N +T + RNLTEL+
Sbjct: 575 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 625
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 170/391 (43%), Gaps = 43/391 (10%)
Query: 6 TQLSSLNLADNQLIGSIPSSIFEL--VNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILS 63
T + +L+L+++QL + ++ L NLT + LS+NN V FA L L+Y L
Sbjct: 232 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLE 290
Query: 64 --NISLSVSTKLT--VNSSFPNL-WALGLSACNISEFPDILKTQHQ----LDWLDLSENQ 114
NI S L N + NL + + +++ P I Q L+ L++ +N
Sbjct: 291 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 350
Query: 115 IRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMV 174
I G I S M+ G+ L L LS +F TS+ L N F+ SL + P H+
Sbjct: 351 IPG-IKSNMF-TGLINLKYLSLSNSF-TSLRTL--TNETFV---------SLAHSPLHI- 395
Query: 175 QLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIP--QCLGNSTLENLDLGMNNFQG 232
L+++ N ++ +F L ++ L L N + ++ + G + + L N +
Sbjct: 396 -LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 454
Query: 233 TIPQTYAKGCNLTYLRLSGNHLEG--PLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNST 290
++A +L L L L+ P NL +LD+ NNN++ + L
Sbjct: 455 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 514
Query: 291 RLSFLDVRNNNLS---------GPIPECLGNSTSLSFLDVGNNSLSG-PIPEYLGNSTLE 340
+L LD+++NNL+ GPI G S L L++ +N P+ + L+
Sbjct: 515 KLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELK 573
Query: 341 VLDMRMNKFSGSLPQTFGKSCVLVSLKLNGN 371
++D+ +N + F L SL L N
Sbjct: 574 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 604
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 106/270 (39%), Gaps = 41/270 (15%)
Query: 168 NLPPHMVQLSISNNSLTGEIPSSFCNLS--------SIQYLYLSNN-----SLSGQIPQC 214
NL P + +S + P SF + +Q++ LSN+ +L G + QC
Sbjct: 58 NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 117
Query: 215 LGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSG--NHLEGPLPPSLSNCVNLQVL- 271
S L+NL L I T AK NL L LSG E L LS+C L L
Sbjct: 118 ---SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174
Query: 272 -----DVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSL 326
D ++ + T+L+ R N + + +L LD+ ++ +
Sbjct: 175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234
Query: 327 --SGPIPEYLGNSTLEVLDMRMNKFSGSLPQT---FGKSCVLVSLKLNG-------NRLE 374
+ E+ + L+ L +++ +P+T G+ L +L++ G L+
Sbjct: 235 LKNDCFQEFFQLNYLQHLS--LSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK 292
Query: 375 GPLPPSLVNCRHLEVI---DVGNNQINETF 401
LP +NC H I +GN + E +
Sbjct: 293 EALPHLQINCSHFTTIARPTIGNKKNQEIW 322
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 108 LDLSENQIRGRIPSWMWD--IGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGS 165
LDLS N + W +H+L NF++S +P NL +L L SN L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 166 LPNLPPHMVQLSI---SNNSLTGEIPSSFCNLSSIQYLYLSNNSLS 208
L + L + NN + ++F +++ +Q LYLS N +S
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
>pdb|4APL|A Chain A, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|B Chain B, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|D Chain D, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|E Chain E, Crystal Structure Of Ama1 From Neospora Caninum
Length = 431
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 302 LSGPIPECL-GNSTSLSFLDVGNNSLSGPIPEYLGNSTLEV----LDMRMNKFSGSLPQT 356
LS P+CL +S ++S+ +G SLS P+ + S V D + S P+T
Sbjct: 327 LSHKAPDCLVSDSKAVSYTALG--SLSEETPDIIIPSNPSVNPSTPDEALQCRSSEFPET 384
Query: 357 FGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 402
FG V + + + G + + V+C E D G+N P
Sbjct: 385 FGSCDVQACKRQKTSCVGGQIQSTSVDCTAEEQNDCGSNTAAALVP 430
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 101 TQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH---LPW-KNLEFLT 156
T +L L L N ++ + + +L LD+S N L S + W +++ L
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434
Query: 157 LDSNLLQGSLPN-LPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSG 209
L SN+L GS+ LPP + L + NN + IP +L ++Q L +++N L
Sbjct: 435 LSSNMLTGSVFRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS 487
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 506 TIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAG 564
++LSSN G + L +K L++ HNN IP + +L L+ L+++SN+L
Sbjct: 432 VLNLSSNMLTGSVFRCLPP--KVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKS 487
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 39/191 (20%)
Query: 31 NLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSAC 90
+ TF++ + N F+ SV + LK L+ LIL L N + + L
Sbjct: 354 SFTFLNFTQNVFTDSV-FQGCSTLKRLQTLILQRNGLK------------NFFKVALMTK 400
Query: 91 NISEFPDILKTQHQLDWLDLSENQIRG----RIPSWMWDIGVHTLFRLDLSRNFLTS--I 144
N+S L+ LD+S N + R +W I V L+LS N LT
Sbjct: 401 NMSS----------LETLDVSLNSLNSHAYDRTCAWAESILV-----LNLSSNMLTGSVF 445
Query: 145 DHLPWKNLEFLTLDSNLLQGSLPNLPPHMV---QLSISNNSLTGEIPSSFCNLSSIQYLY 201
LP K ++ L L +N + S+P H+ +L++++N L F L+S+QY++
Sbjct: 446 RCLPPK-VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503
Query: 202 LSNNSLSGQIP 212
L +N P
Sbjct: 504 LHDNPWDCTCP 514
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 168 NLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSL-SGQIPQCLGNSTLENLDLG 226
+LPP LS+S NS++ LS ++ L LS+N + S L N LE LD+
Sbjct: 49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108
Query: 227 MNNFQ 231
N Q
Sbjct: 109 HNRLQ 113
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 363 LVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF- 421
+ L L+GN+ +P L N +HL +ID+ NN+I+ + +L L L NR
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 422 CGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAM 462
C P +T LR++ L N + V+P N A+
Sbjct: 92 CIP---PRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSAL 128
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 243 NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNL 302
++T L L GN +P LSN +L ++D+ NN +S + N T+L L + N L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 303 SGPIPECLGNSTSLSFLDVGNNSLSGPIPE 332
P SL L + N +S +PE
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 30/219 (13%)
Query: 197 IQYLYLSNN-----SLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSG 251
+Q++ LSN+ +L G + QC S L+NL L I T AK NL L LSG
Sbjct: 57 VQHMDLSNSVIEVSTLHGILSQC---SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 113
Query: 252 --NHLEGPLPPSLSNCVNLQVL------DVGNNNLSGPIPECLGNSTRLSFLDVRNNNLS 303
E L LS+C L L D ++ + T+L+ R N
Sbjct: 114 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 173
Query: 304 GPIPECLGNSTSLSFLDVGNNSL--SGPIPEYLGNSTLEVLDMRMNKFSGSLPQT---FG 358
+ + +L LD+ ++ + + E+ + L+ + +++ +P+T G
Sbjct: 174 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ--HLSLSRCYDIIPETLLELG 231
Query: 359 KSCVLVSLKLNG-------NRLEGPLPPSLVNCRHLEVI 390
+ L +L++ G L+ LP +NC H I
Sbjct: 232 EIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTI 270
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 85/226 (37%), Gaps = 36/226 (15%)
Query: 366 LKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPI 425
L L N ++ + + RHLE++ + N + + + LP L L L NR
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL--TT 97
Query: 426 GDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYES 485
T+ KLR + L N + P + N ++ R D E+ + ++ + +E
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLRRLDLG--ELKRLEYISEAAFEG 154
Query: 486 I------SLTMKG-NDIQMERILTTFATIDLSSNR--------FQGEIS----------- 519
+ +L M DI L ++LS NR FQG S
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 520 -----EVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 560
L SL+ LN+SHNNL L LE + L+ N
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 88/227 (38%), Gaps = 38/227 (16%)
Query: 366 LKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPI 425
L L N ++ + + RHLE++ + N + + + LP L L L NR
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL--TT 97
Query: 426 GDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYES 485
T+ KLR + L N + P + N ++ R D E+ + ++ + +E
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLRRLDLG--ELKRLEYISEAAFEG 154
Query: 486 I------SLTMKG-NDIQMERILTTFATIDLSSNR--------FQGEIS----------- 519
+ +L M DI L ++LS NR FQG S
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 520 -----EVLGKLNSLKSLNISHNNLTGGIPSSLRN-LTELESLDLSSN 560
L SL+ LN+SHNNL +P L L LE + L+ N
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHLNHN 260
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 18/208 (8%)
Query: 248 RLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP 307
+++ + L+ L + N++ LD+ N LS L T+L L++ +N L +
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75
Query: 308 ECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSG-SLPQTFGKSCVLVSL 366
L + ++L LD+ NN + E L ++E L N S S + GK ++
Sbjct: 76 --LESLSTLRTLDLNNNY----VQELLVGPSIETLHAANNNISRVSCSRGQGKK----NI 125
Query: 367 KLNGNRLEGPLPPSLVNCR-HLEVIDVGNNQINET-FPHWLDVLPELQVLTLRSNRFCGP 424
L N++ L CR ++ +D+ N+I+ F L+ L L+ N
Sbjct: 126 YLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN----F 180
Query: 425 IGDTKTRVPFPKLRIIDLSYNQFTGVLP 452
I D K +V F KL+ +DLS N+ + P
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGP 208
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 362 VLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 421
++ L L+ NRL LPP+L R LEV+ +N + + LP LQ L L +NR
Sbjct: 464 LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRL 520
Query: 422 CGPIGDTKTRVPFPKLRIIDLSYN 445
+ V P+L +++L N
Sbjct: 521 -QQSAAIQPLVSCPRLVLLNLQGN 543
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 362 VLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 421
++ L L+ NRL LPP+L R LEV+ +N + + LP LQ L L +NR
Sbjct: 464 LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRL 520
Query: 422 CGPIGDTKTRVPFPKLRIIDLSYN 445
+ V P+L +++L N
Sbjct: 521 -QQSAAIQPLVSCPRLVLLNLQGN 543
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 325 SLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNC 384
SL P N+ ++ + + +LP+T + ++L N ++ P +
Sbjct: 2 SLHCPAACTCSNNIVDCRGKGLTEIPTNLPET------ITEIRLEQNTIKVIPPGAFSPY 55
Query: 385 RHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 421
+ L ID+ NNQI+E P L L L L N+
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 30/173 (17%)
Query: 5 LTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSN 64
L L+SLNL++NQ+ P I L N+T + L+ N + ++ A LKNL +L L
Sbjct: 65 LPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDE 119
Query: 65 ISLSVSTKLTVNS-------------------SFPNLWALGLSACNISEFPDILKTQHQL 105
+ + L P L +L L I++ +L +L
Sbjct: 120 NKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKL 178
Query: 106 DWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLP-WKNLEFLTL 157
D L L +NQI +P G+ L L LS+N ++ + L KNL+ L L
Sbjct: 179 DTLSLEDNQISDIVPLA----GLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 227
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 325 SLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNC 384
SL P N+ ++ + + +LP+T + ++L N ++ P +
Sbjct: 2 SLHCPAACTCSNNIVDCRGKGLTEIPTNLPET------ITEIRLEQNTIKVIPPGAFSPY 55
Query: 385 RHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 421
+ L ID+ NNQI+E P L L L L N+
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 94 EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLE 153
EFP+I + E +I+ + D + FRL ++R + +++HL W N E
Sbjct: 5 EFPEITEEM---------EKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDE 55
Query: 154 FLTLDSNLL 162
+ N+L
Sbjct: 56 IINFYMNML 64
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 94 EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLE 153
EFP+I + E +I+ + D + FRL ++R + +++HL W N E
Sbjct: 1 EFPEITEEM---------EKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDE 51
Query: 154 FLTLDSNLL 162
+ N+L
Sbjct: 52 IINFYMNML 60
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 94 EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLE 153
EFP+I + E +I+ + D + FRL ++R + +++HL W N E
Sbjct: 1 EFPEITEEM---------EKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDE 51
Query: 154 FLTLDSNLL 162
+ N+L
Sbjct: 52 IINFYMNML 60
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 94 EFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLE 153
EFP+I + E +I+ + D + FRL ++R + +++HL W N E
Sbjct: 1 EFPEITEEM---------EKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDE 51
Query: 154 FLTLDSNLL 162
+ N+L
Sbjct: 52 IINFYMNML 60
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 18/208 (8%)
Query: 248 RLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP 307
+++ + L+ L + N++ LD+ N LS L T+L L++ +N L +
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75
Query: 308 ECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSG-SLPQTFGKSCVLVSL 366
L + ++L LD+ NN + E L ++E L N S S + GK + ++
Sbjct: 76 --LESLSTLRTLDLNNNY----VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA- 128
Query: 367 KLNGNRLEGPLPPSLVNCR-HLEVIDVGNNQINET-FPHWLDVLPELQVLTLRSNRFCGP 424
N++ L CR ++ +D+ N+I+ F L+ L L+ N
Sbjct: 129 ---NNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN----F 180
Query: 425 IGDTKTRVPFPKLRIIDLSYNQFTGVLP 452
I D K +V F KL+ +DLS N+ + P
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGP 208
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 560
L +I+ SN+ + + GK+ LK LN++ N L LT L+ + L +N
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,054,222
Number of Sequences: 62578
Number of extensions: 856591
Number of successful extensions: 3140
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1954
Number of HSP's gapped (non-prelim): 589
length of query: 705
length of database: 14,973,337
effective HSP length: 106
effective length of query: 599
effective length of database: 8,340,069
effective search space: 4995701331
effective search space used: 4995701331
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)