Query 005267
Match_columns 705
No_of_seqs 777 out of 4871
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 20:45:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.9E-66 6.3E-71 613.0 43.6 540 6-614 69-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.5E-58 9.8E-63 543.2 39.7 508 30-611 69-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.6E-39 5.7E-44 324.0 7.8 392 153-591 55-456 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 4.2E-42 9.1E-47 329.7 -17.6 471 8-587 47-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 1.3E-37 2.8E-42 311.9 8.8 400 170-615 51-457 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 2.3E-38 5E-43 304.0 -13.5 452 3-563 65-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 3.7E-36 8E-41 317.5 -3.3 482 11-584 3-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.6E-35 3.4E-40 312.7 -5.5 399 31-449 46-466 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 7.1E-33 1.5E-37 279.7 -4.7 364 3-397 4-374 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2E-32 4.4E-37 276.4 -4.1 366 173-591 9-379 (1255)
11 PLN03210 Resistant to P. syrin 99.9 2E-23 4.4E-28 247.6 28.4 334 170-561 557-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.7E-23 3.7E-28 248.2 25.8 340 187-585 550-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 4.3E-27 9.2E-32 226.5 -4.4 421 154-584 50-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 7.5E-22 1.6E-26 216.9 17.6 223 80-333 242-464 (788)
15 KOG4237 Extracellular matrix p 99.9 3.3E-24 7.2E-29 206.7 -3.5 390 153-560 70-498 (498)
16 PRK15387 E3 ubiquitin-protein 99.9 7E-21 1.5E-25 209.3 18.0 263 8-310 203-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 9.9E-20 2.1E-24 201.8 11.7 246 7-303 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.2E-18 2.7E-23 193.2 15.4 225 81-327 200-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 5.3E-19 1.1E-23 182.9 1.0 83 246-328 2-95 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 7.5E-19 1.6E-23 181.7 1.4 106 222-327 2-121 (319)
21 PLN03150 hypothetical protein; 99.6 1.9E-15 4.1E-20 167.5 11.8 118 503-620 419-538 (623)
22 KOG0617 Ras suppressor protein 99.6 1.3E-17 2.8E-22 143.0 -4.6 180 361-591 33-216 (264)
23 KOG0617 Ras suppressor protein 99.6 4E-17 8.6E-22 140.0 -4.8 160 215-402 30-190 (264)
24 PLN03150 hypothetical protein; 99.3 1.3E-11 2.7E-16 137.3 11.8 114 436-592 419-533 (623)
25 COG4886 Leucine-rich repeat (L 99.1 8.9E-11 1.9E-15 124.9 8.2 178 150-334 116-297 (394)
26 KOG0532 Leucine-rich repeat (L 99.1 3.7E-12 8.1E-17 129.7 -2.7 129 175-311 125-254 (722)
27 KOG1259 Nischarin, modulator o 99.1 1.8E-11 4E-16 114.9 1.8 87 501-590 328-415 (490)
28 KOG0532 Leucine-rich repeat (L 99.1 2.7E-12 6E-17 130.7 -4.6 189 199-396 79-271 (722)
29 KOG1909 Ran GTPase-activating 99.1 1E-11 2.2E-16 119.6 -1.4 177 236-422 24-226 (382)
30 COG4886 Leucine-rich repeat (L 99.1 2.5E-10 5.5E-15 121.4 9.0 178 79-285 115-296 (394)
31 KOG3207 Beta-tubulin folding c 99.1 2.2E-11 4.8E-16 120.5 0.3 205 4-231 119-339 (505)
32 KOG3207 Beta-tubulin folding c 99.1 2.1E-11 4.5E-16 120.7 -0.6 210 52-280 118-340 (505)
33 KOG1909 Ran GTPase-activating 99.0 2.6E-11 5.6E-16 116.8 -0.5 132 171-302 157-310 (382)
34 KOG1259 Nischarin, modulator o 99.0 8E-11 1.7E-15 110.7 1.5 132 191-328 280-413 (490)
35 PF14580 LRR_9: Leucine-rich r 99.0 5.6E-10 1.2E-14 101.3 4.7 80 31-116 20-101 (175)
36 KOG4658 Apoptotic ATPase [Sign 98.9 7.2E-10 1.6E-14 125.9 6.1 128 195-324 523-652 (889)
37 KOG4658 Apoptotic ATPase [Sign 98.9 8.7E-10 1.9E-14 125.2 5.0 128 6-140 523-653 (889)
38 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.3E-14 99.5 3.7 125 4-137 17-148 (175)
39 PF13855 LRR_8: Leucine rich r 98.9 7.7E-10 1.7E-14 82.4 2.3 59 503-561 2-60 (61)
40 KOG0531 Protein phosphatase 1, 98.9 2.1E-10 4.5E-15 122.2 -1.1 248 193-452 70-322 (414)
41 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.5E-14 81.4 3.2 61 526-586 1-61 (61)
42 KOG0531 Protein phosphatase 1, 98.8 5.9E-10 1.3E-14 118.7 -0.7 246 264-591 70-322 (414)
43 KOG2120 SCF ubiquitin ligase, 98.4 5.9E-09 1.3E-13 98.4 -5.9 59 192-252 310-373 (419)
44 KOG2982 Uncharacterized conser 98.3 9.8E-08 2.1E-12 90.3 -1.0 103 56-160 46-156 (418)
45 KOG4579 Leucine-rich repeat (L 98.3 3E-08 6.6E-13 82.7 -4.0 89 502-593 77-165 (177)
46 KOG1859 Leucine-rich repeat pr 98.3 3.9E-08 8.4E-13 103.7 -5.0 125 218-349 164-291 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.2 2.2E-08 4.8E-13 94.6 -6.7 174 81-277 186-374 (419)
48 KOG1859 Leucine-rich repeat pr 98.2 4.8E-08 1E-12 103.0 -5.7 104 338-449 165-268 (1096)
49 KOG2982 Uncharacterized conser 98.1 5.2E-07 1.1E-11 85.5 0.6 83 361-443 199-287 (418)
50 KOG1644 U2-associated snRNP A' 98.1 3.8E-06 8.2E-11 75.5 5.6 104 7-113 43-150 (233)
51 COG5238 RNA1 Ran GTPase-activa 98.1 6.8E-07 1.5E-11 83.6 0.6 37 28-64 28-67 (388)
52 COG5238 RNA1 Ran GTPase-activa 98.0 2.7E-06 5.9E-11 79.7 2.4 207 4-232 28-286 (388)
53 PF12799 LRR_4: Leucine Rich r 97.9 7.9E-06 1.7E-10 55.4 2.7 36 527-563 2-37 (44)
54 PRK15386 type III secretion pr 97.9 7.3E-05 1.6E-09 76.6 10.5 54 79-139 51-104 (426)
55 KOG4579 Leucine-rich repeat (L 97.8 4.4E-07 9.6E-12 75.9 -5.2 56 243-300 78-133 (177)
56 PF12799 LRR_4: Leucine Rich r 97.8 2.9E-05 6.4E-10 52.6 3.5 37 80-116 1-37 (44)
57 PRK15386 type III secretion pr 97.8 9.8E-05 2.1E-09 75.7 8.7 77 357-447 48-124 (426)
58 KOG4341 F-box protein containi 97.6 1.7E-06 3.7E-11 86.1 -5.6 108 218-325 320-437 (483)
59 KOG3665 ZYG-1-like serine/thre 97.6 3.6E-05 7.7E-10 85.9 3.4 128 55-187 122-266 (699)
60 KOG1644 U2-associated snRNP A' 97.6 0.00017 3.7E-09 65.1 6.7 79 81-162 43-125 (233)
61 KOG4341 F-box protein containi 97.6 2.4E-06 5.3E-11 85.0 -5.4 286 31-320 139-458 (483)
62 KOG2739 Leucine-rich acidic nu 97.6 3.7E-05 8.1E-10 72.4 2.5 113 20-137 33-151 (260)
63 KOG3665 ZYG-1-like serine/thre 97.5 4.3E-05 9.3E-10 85.2 2.5 137 6-145 122-266 (699)
64 PF13306 LRR_5: Leucine rich r 97.3 0.00076 1.6E-08 58.9 7.0 85 236-323 6-90 (129)
65 PF13306 LRR_5: Leucine rich r 97.2 0.001 2.2E-08 58.1 6.9 122 189-316 6-128 (129)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00067 1.4E-08 64.2 3.2 87 52-145 40-132 (260)
67 KOG2123 Uncharacterized conser 96.5 8.2E-05 1.8E-09 70.3 -5.9 100 5-109 18-123 (388)
68 KOG2123 Uncharacterized conser 96.1 0.00029 6.3E-09 66.7 -4.4 99 339-441 21-123 (388)
69 PF00560 LRR_1: Leucine Rich R 95.5 0.0055 1.2E-07 34.4 0.6 12 528-539 2-13 (22)
70 KOG1947 Leucine rich repeat pr 95.3 0.0014 3.1E-08 71.8 -4.0 170 29-206 187-373 (482)
71 PF00560 LRR_1: Leucine Rich R 95.2 0.0054 1.2E-07 34.4 0.1 21 551-572 1-21 (22)
72 KOG1947 Leucine rich repeat pr 93.2 0.0096 2.1E-07 65.3 -3.2 109 218-326 188-307 (482)
73 PF13504 LRR_7: Leucine rich r 92.6 0.069 1.5E-06 27.7 1.1 9 83-91 4-12 (17)
74 PF13504 LRR_7: Leucine rich r 92.3 0.09 1.9E-06 27.3 1.4 13 527-539 2-14 (17)
75 KOG4308 LRR-containing protein 91.8 0.0019 4.1E-08 69.2 -10.7 61 504-564 235-304 (478)
76 smart00369 LRR_TYP Leucine-ric 91.6 0.16 3.4E-06 29.7 2.1 23 29-52 1-23 (26)
77 smart00370 LRR Leucine-rich re 91.6 0.16 3.4E-06 29.7 2.1 23 29-52 1-23 (26)
78 KOG4308 LRR-containing protein 91.0 0.0013 2.7E-08 70.5 -12.9 36 267-302 145-184 (478)
79 smart00369 LRR_TYP Leucine-ric 90.2 0.24 5.3E-06 28.9 1.9 15 550-564 2-16 (26)
80 smart00370 LRR Leucine-rich re 90.2 0.24 5.3E-06 28.9 1.9 15 550-564 2-16 (26)
81 KOG0473 Leucine-rich repeat pr 89.9 0.013 2.8E-07 54.4 -5.5 84 501-587 41-124 (326)
82 KOG3864 Uncharacterized conser 88.0 0.11 2.4E-06 47.5 -0.9 82 503-584 102-186 (221)
83 PF13516 LRR_6: Leucine Rich r 84.6 0.41 8.9E-06 27.3 0.6 16 503-518 3-18 (24)
84 KOG0473 Leucine-rich repeat pr 84.3 0.019 4.1E-07 53.3 -7.7 89 236-327 36-124 (326)
85 smart00365 LRR_SD22 Leucine-ri 75.1 2.3 5E-05 24.9 1.6 14 550-563 2-15 (26)
86 KOG3864 Uncharacterized conser 74.5 0.97 2.1E-05 41.6 -0.0 77 387-463 103-179 (221)
87 KOG4242 Predicted myosin-I-bin 74.1 13 0.00028 39.0 7.7 21 195-215 165-185 (553)
88 KOG4242 Predicted myosin-I-bin 71.4 17 0.00037 38.2 7.9 33 291-323 355-389 (553)
89 KOG3763 mRNA export factor TAP 67.7 3.1 6.8E-05 44.3 1.8 36 78-113 216-254 (585)
90 smart00364 LRR_BAC Leucine-ric 65.1 4.7 0.0001 23.6 1.4 17 81-97 3-19 (26)
91 smart00368 LRR_RI Leucine rich 63.0 6 0.00013 23.6 1.7 13 527-539 3-15 (28)
92 TIGR00864 PCC polycystin catio 61.7 5.3 0.00011 51.2 2.5 36 556-591 1-36 (2740)
93 KOG3763 mRNA export factor TAP 53.8 9.2 0.0002 40.9 2.4 57 129-185 218-284 (585)
94 PF00558 Vpu: Vpu protein; In 49.8 15 0.00032 28.4 2.3 23 649-671 9-31 (81)
95 PF06305 DUF1049: Protein of u 44.7 28 0.00061 25.9 3.2 15 652-666 24-38 (68)
96 PF08693 SKG6: Transmembrane a 44.2 19 0.00041 23.6 1.8 16 646-661 13-28 (40)
97 smart00367 LRR_CC Leucine-rich 31.0 36 0.00078 19.6 1.5 11 103-113 2-12 (26)
98 PTZ00382 Variant-specific surf 30.2 21 0.00046 28.9 0.5 17 650-666 71-87 (96)
99 PF04478 Mid2: Mid2 like cell 28.9 21 0.00046 31.3 0.3 6 648-653 52-57 (154)
100 PF06697 DUF1191: Protein of u 27.2 1.3E+02 0.0029 29.6 5.4 12 684-695 242-253 (278)
101 TIGR00864 PCC polycystin catio 24.8 40 0.00086 43.9 1.8 32 508-539 1-32 (2740)
102 PF03302 VSP: Giardia variant- 23.0 37 0.00081 35.9 0.9 23 646-668 368-390 (397)
103 PF01102 Glycophorin_A: Glycop 21.7 65 0.0014 27.4 1.9 13 649-661 66-78 (122)
104 PRK11677 hypothetical protein; 20.9 39 0.00085 29.2 0.5 17 645-661 3-19 (134)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-66 Score=613.04 Aligned_cols=540 Identities=33% Similarity=0.512 Sum_probs=456.6
Q ss_pred CCCCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCccCCCCCCEE
Q 005267 6 TQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWAL 85 (705)
Q Consensus 6 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 85 (705)
.+++.|||++|.+++.++..|..+++|++|+|++|.++|.+|..+|..+++|++|+|++| ...+.+|. ..+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n--~l~~~~p~-~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN--NFTGSIPR-GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC--ccccccCc-cccCCCCEE
Confidence 467788888888887777788888888888888888887888777678888888888888 44444443 256778888
Q ss_pred ecCCCCC-CCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEccCCcCCC
Q 005267 86 GLSACNI-SEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQG 164 (705)
Q Consensus 86 ~L~~n~l-~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~ 164 (705)
++++|.+ +.+|..+..+++|++|++++|.+.+.+|..+.++ ++|++|++++|.+.+..+..+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~p~~l~-------------- 209 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL--TSLEFLTLASNQLVGQIPRELG-------------- 209 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhC--cCCCeeeccCCCCcCcCChHHc--------------
Confidence 8888877 5677777778888888888887777777777766 6777777776666554441111
Q ss_pred CCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCC
Q 005267 165 SLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCN 243 (705)
Q Consensus 165 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~ 243 (705)
.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..++. ++|++|++++|.+.+..|..+..+++
T Consensus 210 ----~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 285 (968)
T PLN00113 210 ----QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285 (968)
T ss_pred ----CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccC
Confidence 1356666677777777777777888888888888888888777777766 78888888888888888888888888
Q ss_pred CCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccC
Q 005267 244 LTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGN 323 (705)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 323 (705)
|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++
T Consensus 286 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred cCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence 88888888888888888888888899999988888888888888888899999999988888888888888999999999
Q ss_pred cccccccCccccc-CcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcc
Q 005267 324 NSLSGPIPEYLGN-STLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP 402 (705)
Q Consensus 324 n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 402 (705)
|.+.+.+|..+.. .+|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..++.|+.|++++|++++.++
T Consensus 366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 445 (968)
T PLN00113 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445 (968)
T ss_pred CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC
Confidence 9888888876654 388999999999998999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccc
Q 005267 403 HWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSY 482 (705)
Q Consensus 403 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 482 (705)
..+..+++|+.|++++|++.+..|... ..++|+.||+++|++++.+|..+.
T Consensus 446 ~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~~~-------------------------- 496 (968)
T PLN00113 446 SRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRKLG-------------------------- 496 (968)
T ss_pred hhhccCCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCccChhhh--------------------------
Confidence 888899999999999999998887654 357899999999999988875431
Q ss_pred eeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcC
Q 005267 483 YESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKL 562 (705)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 562 (705)
.+++|+.|+|++|++.+.+|..++++++|++|+|++|.+++.+|..++.+++|+.|||++|++
T Consensus 497 -----------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 497 -----------------SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred -----------------hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 167899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccCCCCCCeEecccCcccccCCCCCCCCCCCCCcccCCCCCCCCC
Q 005267 563 AGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGIDSYSGNVGLCGFP 614 (705)
Q Consensus 563 ~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~ 614 (705)
++.+|..+..+++|++|++++|+++|.+|..++|.++...++.||+.+||.+
T Consensus 560 ~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 560 SGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.5e-58 Score=543.22 Aligned_cols=508 Identities=35% Similarity=0.540 Sum_probs=433.5
Q ss_pred CCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc--CCCCCCEEecCCCCC-CCCChhccCCCCCC
Q 005267 30 VNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS--SFPNLWALGLSACNI-SEFPDILKTQHQLD 106 (705)
Q Consensus 30 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~ 106 (705)
.+++.|+|++|.++|.++..+ ..+++|++|+|++| ...+.+|... .+++|++|++++|.+ +.+|. ..+++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~-~~l~~L~~L~Ls~n--~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~ 143 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAI-FRLPYIQTINLSNN--QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE 143 (968)
T ss_pred CcEEEEEecCCCccccCChHH-hCCCCCCEEECCCC--ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCC
Confidence 467778888777776665543 77777888877777 3444555433 566677777776666 44443 3456666
Q ss_pred EEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCC---CCCCcEEEcccCCC
Q 005267 107 WLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNL---PPHMVQLSISNNSL 183 (705)
Q Consensus 107 ~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l 183 (705)
+|+|++|.+++.+|..+..+ ++|++|++++|.+. +.+|.. +++|++|++++|.+
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l--~~L~~L~L~~n~l~---------------------~~~p~~~~~l~~L~~L~L~~n~l 200 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSF--SSLKVLDLGGNVLV---------------------GKIPNSLTNLTSLEFLTLASNQL 200 (968)
T ss_pred EEECcCCcccccCChHHhcC--CCCCEEECccCccc---------------------ccCChhhhhCcCCCeeeccCCCC
Confidence 66666666666666666555 55555555555544 444432 56788888888888
Q ss_pred CCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccC
Q 005267 184 TGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSL 262 (705)
Q Consensus 184 ~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 262 (705)
++.+|..++++++|++|++++|.+.+.+|..++. ++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..+
T Consensus 201 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 280 (968)
T PLN00113 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280 (968)
T ss_pred cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH
Confidence 8889999999999999999999999999988877 999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccC-cccE
Q 005267 263 SNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNS-TLEV 341 (705)
Q Consensus 263 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~ 341 (705)
.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.. +|+.
T Consensus 281 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~ 360 (968)
T PLN00113 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360 (968)
T ss_pred hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999999888877654 9999
Q ss_pred EEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcC
Q 005267 342 LDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 421 (705)
Q Consensus 342 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 421 (705)
|++++|++++.+|..+..+.+|+.|++++|.+.+.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++
T Consensus 361 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred EECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhh
Q 005267 422 CGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERIL 501 (705)
Q Consensus 422 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 501 (705)
.+.++... ..+++|+.|++++|++.+.+|..+ ..
T Consensus 441 ~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~--------------------------------------------~~ 474 (968)
T PLN00113 441 QGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF--------------------------------------------GS 474 (968)
T ss_pred cCccChhh--ccCCCCcEEECcCceeeeecCccc--------------------------------------------cc
Confidence 98877655 468999999999999998777432 04
Q ss_pred ccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEec
Q 005267 502 TTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNL 581 (705)
Q Consensus 502 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 581 (705)
++|+.||+++|++++.+|..+.++++|++|+|++|++++.+|..+.++++|++|+|++|.+++.+|..+..+++|+.|++
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCCC-CCCCCCCCCcccCCCCCC
Q 005267 582 SNNQLEGPIPGG-PQFNTFGIDSYSGNVGLC 611 (705)
Q Consensus 582 s~N~l~g~ip~~-~~~~~~~~~~~~~n~~lc 611 (705)
++|+++|.+|.. ..+..+......+|+..+
T Consensus 555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CCCcccccCChhHhcCcccCEEeccCCccee
Confidence 999999999975 233344444555666554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-39 Score=324.03 Aligned_cols=392 Identities=23% Similarity=0.247 Sum_probs=324.6
Q ss_pred cEEEccCCcCCCC-----CCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcC
Q 005267 153 EFLTLDSNLLQGS-----LPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLG 226 (705)
Q Consensus 153 ~~L~l~~n~~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~ 226 (705)
..|+++++.+... .+..++..+.|++++|.+....+..|.++++|+.+++.+|.++ .+|.+.+. .+|+.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeee
Confidence 4455555555432 2333677889999999999888889999999999999999998 78887777 679999999
Q ss_pred CCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCC
Q 005267 227 MNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPI 306 (705)
Q Consensus 227 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 306 (705)
+|.|+..-.+.+..++.|+.|||+.|.|+.+.-..|..-.++++|+|++|+|+..-...|..+.+|..|.|+.|.++...
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 99999888899999999999999999999665567777789999999999999888899999999999999999999888
Q ss_pred CccccCCCCCCeEeccCcccccc-cCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCC
Q 005267 307 PECLGNSTSLSFLDVGNNSLSGP-IPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCR 385 (705)
Q Consensus 307 ~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 385 (705)
+..|.++++|+.|+|..|++.-. .-.+-+..+|+.|.+..|.++......|-.+.++++|+|..|+++..-..++.+++
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 88999999999999999998633 22233455888888888888877778888888888888888888877777888888
Q ss_pred CCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccc
Q 005267 386 HLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRR 465 (705)
Q Consensus 386 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~ 465 (705)
.|+.|+++.|.|..+.+..+...++|+.|+|++|+++...+..+ ..+..|++|.|++|.+...-..
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf--~~L~~Le~LnLs~Nsi~~l~e~------------ 359 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF--RVLSQLEELNLSHNSIDHLAEG------------ 359 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH--HHHHHhhhhcccccchHHHHhh------------
Confidence 88888888888888878778888888888888888876655554 4567788888888877532111
Q ss_pred cCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccch---hhhcCCCCCEEecCCCcCCccC
Q 005267 466 DDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISE---VLGKLNSLKSLNISHNNLTGGI 542 (705)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~L~~L~Ls~N~l~~~~ 542 (705)
.+..+++|++|||++|.+++.|.+ .|.++++|+.|++.+|++....
T Consensus 360 -------------------------------af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 360 -------------------------------AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred -------------------------------HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 122378899999999999876653 4778999999999999999777
Q ss_pred CccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCC
Q 005267 543 PSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 591 (705)
Q Consensus 543 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 591 (705)
..+|..+..||+|||.+|.|..+-|.+|..+ .|+.|-+..-.+-|.|.
T Consensus 409 krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ 456 (873)
T ss_pred hhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence 7899999999999999999998999999998 89998888777777664
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.2e-42 Score=329.65 Aligned_cols=471 Identities=29% Similarity=0.385 Sum_probs=286.5
Q ss_pred CCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCEEe
Q 005267 8 LSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALG 86 (705)
Q Consensus 8 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~ 86 (705)
++.+++++|.++ .+.+.+.++..|.+|++++|+++ +.|+++ +.+..++.|+.++|++ ..+|..+ .+.+|+.++
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~l---s~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKL---SELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchH---hhccHHHhhhhhhhhhh
Confidence 344445555443 23333444555555555555554 444444 4555555555554421 2233322 444445555
Q ss_pred cCCCCCCCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEccCCcCCCCC
Q 005267 87 LSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSL 166 (705)
Q Consensus 87 L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~ 166 (705)
+++|.+.++|+.++.+..|..++..+|+++ ..|+.++. +.++..+++.+|++....
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-----------------------~~~l~~l~~~~n~l~~l~ 176 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVN-----------------------LSKLSKLDLEGNKLKALP 176 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccccccc-cCchHHHH-----------------------HHHHHHhhccccchhhCC
Confidence 555555444444444444555554444444 34444443 444444555555554444
Q ss_pred CCC--CCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCC
Q 005267 167 PNL--PPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNL 244 (705)
Q Consensus 167 ~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 244 (705)
|.. ++.|++||.-.|-++ .+|..++.+.+|..|++.+|++. ..|++-++..|+++.++.|.+.....+...+++++
T Consensus 177 ~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l 254 (565)
T KOG0472|consen 177 ENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSL 254 (565)
T ss_pred HHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccc
Confidence 433 556666777677666 78888999999999999999987 67777777999999999999985444555689999
Q ss_pred CEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCC---CCeEe-
Q 005267 245 TYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTS---LSFLD- 320 (705)
Q Consensus 245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~- 320 (705)
.+||+.+|+++ ..|+.++-+.+|+.||+++|.++ .+|..++++ .|+.|.+.+|.+..+-.+ +-+... |++|.
T Consensus 255 ~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~-ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 255 LVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRRE-IISKGTQEVLKYLRS 330 (565)
T ss_pred eeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHH-HHcccHHHHHHHHHH
Confidence 99999999999 78999999999999999999999 578889999 899999999987633111 111110 11110
Q ss_pred ------ccCcc---------cccccCcccccCcccEEEcCCCcccccccccccC--CCCccEEEccCCcCCCCCCccccC
Q 005267 321 ------VGNNS---------LSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGK--SCVLVSLKLNGNRLEGPLPPSLVN 383 (705)
Q Consensus 321 ------l~~n~---------l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~l~~ 383 (705)
++.-. ..+..|+.....+.+.|+++.-+++....+.|.. -.-.+.++++.|++. ++|..+..
T Consensus 331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~ 409 (565)
T KOG0472|consen 331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE 409 (565)
T ss_pred hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHH
Confidence 11100 0011122222225667777776666433333322 123666777777776 56666655
Q ss_pred CCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccc
Q 005267 384 CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMM 463 (705)
Q Consensus 384 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~ 463 (705)
++.+.+.-+..|+..+.+|..++.+++|..|+|++|.+.. +|....+
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~---------------------------LP~e~~~------ 456 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND---------------------------LPEEMGS------ 456 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh---------------------------cchhhhh------
Confidence 5555443333344445566666667777777666665532 2222111
Q ss_pred cccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCC
Q 005267 464 RRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIP 543 (705)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 543 (705)
+..|+.||+|.|++. .+|..+..+..++++-.++|++....|
T Consensus 457 -------------------------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 457 -------------------------------------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred -------------------------------------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccCh
Confidence 344666666666665 556666666667767667777776666
Q ss_pred ccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCccc
Q 005267 544 SSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 587 (705)
Q Consensus 544 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 587 (705)
+.+.+|.+|..|||.+|.+. .+|..+++|++|++|.+.+|++.
T Consensus 499 ~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 66777777777777777777 66777777777777777777777
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-37 Score=311.89 Aligned_cols=400 Identities=23% Similarity=0.237 Sum_probs=338.1
Q ss_pred CCCCcEEEcccCCCCCCCcccccCC--CCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCE
Q 005267 170 PPHMVQLSISNNSLTGEIPSSFCNL--SSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTY 246 (705)
Q Consensus 170 ~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 246 (705)
...-..||.+++.+.......+... +.-+.|++++|.+...-+..|.. ++|+++++..|.++ .+|.......+|+.
T Consensus 51 ~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 51 PCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEK 129 (873)
T ss_pred CCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeE
Confidence 3456678999988874433333322 34567999999999777777776 99999999999998 77877777778999
Q ss_pred EECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCccc
Q 005267 247 LRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSL 326 (705)
Q Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 326 (705)
|+|.+|.|+.+-.+.+.-++.|++|||+.|.|+...-..|..-.++++|+|++|.|+....+.|.++.+|..|.|+.|++
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence 99999999988888899999999999999999977667788878999999999999999899999999999999999999
Q ss_pred ccccCcccc-cCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhh
Q 005267 327 SGPIPEYLG-NSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWL 405 (705)
Q Consensus 327 ~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 405 (705)
+...+..|. .+.|+.|+|..|++.-.-.-.|..+++|+.|.|..|.+...-...|..|.++++|+|+.|+++..-.+|+
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 976666776 5699999999999985556789999999999999999998888899999999999999999999999999
Q ss_pred hCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceee
Q 005267 406 DVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYES 485 (705)
Q Consensus 406 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 485 (705)
.++++|+.|+++.|.+....++.+ ..+++|+.|||++|+++...+..+
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N~i~~l~~~sf------------------------------ 337 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSNRITRLDEGSF------------------------------ 337 (873)
T ss_pred cccchhhhhccchhhhheeecchh--hhcccceeEeccccccccCChhHH------------------------------
Confidence 999999999999999988877776 457899999999999986544332
Q ss_pred EEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCc---cccCCCCCCeeeCCCCcC
Q 005267 486 ISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPS---SLRNLTELESLDLSSNKL 562 (705)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l 562 (705)
..+..|++|.|++|.++..-...|..+++|++|||++|.+++.+.+ .|..|++|+.|++.+|++
T Consensus 338 -------------~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql 404 (873)
T KOG4194|consen 338 -------------RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL 404 (873)
T ss_pred -------------HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence 2278899999999999988788899999999999999999987754 577899999999999999
Q ss_pred CCcCcccccCCCCCCeEecccCcccccCCCCCCCCCCCCCcccCCCCCCCCCC
Q 005267 563 AGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGIDSYSGNVGLCGFPL 615 (705)
Q Consensus 563 ~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~~ 615 (705)
..+...+|.++..|++|||.+|.+...-|....--.+...-+..-..+|++.+
T Consensus 405 k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 405 KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQL 457 (873)
T ss_pred eecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccH
Confidence 98878899999999999999999987655432111223333444456787654
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-38 Score=304.01 Aligned_cols=452 Identities=26% Similarity=0.332 Sum_probs=318.1
Q ss_pred cCCCCCCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCccCCCCC
Q 005267 3 TNLTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNL 82 (705)
Q Consensus 3 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 82 (705)
.++..+++|++.+|.+. .+|.+++++..++.++.++|+++ .+|.++ +.+..|+.|+.++| ....-.+....+..|
T Consensus 65 ~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~s~n--~~~el~~~i~~~~~l 139 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLDCSSN--ELKELPDSIGRLLDL 139 (565)
T ss_pred hcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhhcccc--ceeecCchHHHHhhh
Confidence 46788999999999987 78999999999999999999998 899988 89999999999998 444333333488999
Q ss_pred CEEecCCCCCCCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC--CCCCCCcEEEccCC
Q 005267 83 WALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH--LPWKNLEFLTLDSN 160 (705)
Q Consensus 83 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~l~~n 160 (705)
+.++..+|++.++|..+..+.+|..+++.+|.+. ..|+..-++ +.|+++|+..|.+..+++ +.+.+|+.|++..|
T Consensus 140 ~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m--~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 140 EDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAM--KRLKHLDCNSNLLETLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHH--HHHHhcccchhhhhcCChhhcchhhhHHHHhhhc
Confidence 9999999999999999999999999999999998 455555556 899999999998887766 55555555555555
Q ss_pred cCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC--CCCCEEEcCCCcCCcccchhc
Q 005267 161 LLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN--STLENLDLGMNNFQGTIPQTY 238 (705)
Q Consensus 161 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~ 238 (705)
.+. ..| .|.+|..|++|.++.|.+. .+|..... +++.+||+.+|+++ ..|+.+
T Consensus 217 ki~----------------------~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~ 271 (565)
T KOG0472|consen 217 KIR----------------------FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI 271 (565)
T ss_pred ccc----------------------cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHH
Confidence 544 334 4555566666666665554 33433332 55666666666665 556666
Q ss_pred cCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccC-----CCCCcE----EEccCcc----ccC-
Q 005267 239 AKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGN-----STRLSF----LDVRNNN----LSG- 304 (705)
Q Consensus 239 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~----L~L~~n~----l~~- 304 (705)
..+.+|++||+++|.++ .+|..++++ .|+.|-+.+|.+...-.+.+.. ++.|+. =.++... -..
T Consensus 272 clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 66666666666666666 456666666 6666666666654211111100 011111 0000000 000
Q ss_pred ---CCCccccCCCCCCeEeccCcccccccCcccccC---cccEEEcCCCcccccccccccCCCCccE-EEccCCcCCCCC
Q 005267 305 ---PIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNS---TLEVLDMRMNKFSGSLPQTFGKSCVLVS-LKLNGNRLEGPL 377 (705)
Q Consensus 305 ---~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~---~L~~L~l~~n~l~~~~~~~~~~~~~L~~-L~L~~n~l~~~~ 377 (705)
........+.+.+.|++++-+++....+.|... -....+++.|++. ++|..+..+..+.+ +.+++|.++ -+
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv 427 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FV 427 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cc
Confidence 011123445678899999999885444444433 4889999999998 67777766655544 555666555 78
Q ss_pred CccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhh
Q 005267 378 PPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLN 457 (705)
Q Consensus 378 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~ 457 (705)
|..++.+++|..|++++|.+.+ +|..++.+..|++|+++.|+|. .+|..+
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr---------------------------~lP~~~-- 477 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFR---------------------------MLPECL-- 477 (565)
T ss_pred hHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccccc---------------------------cchHHH--
Confidence 8899999999999999998865 5666766666777777776653 122111
Q ss_pred hccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCc
Q 005267 458 GFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNN 537 (705)
Q Consensus 458 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 537 (705)
..+..++.+-.++|++....|..++++.+|.+|||.+|.
T Consensus 478 -----------------------------------------y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd 516 (565)
T KOG0472|consen 478 -----------------------------------------YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND 516 (565)
T ss_pred -----------------------------------------hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence 114455566667788887777779999999999999999
Q ss_pred CCccCCccccCCCCCCeeeCCCCcCC
Q 005267 538 LTGGIPSSLRNLTELESLDLSSNKLA 563 (705)
Q Consensus 538 l~~~~p~~l~~l~~L~~L~Ls~N~l~ 563 (705)
+. .+|..++++++|++|++++|.+.
T Consensus 517 lq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 517 LQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hh-hCChhhccccceeEEEecCCccC
Confidence 98 88999999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-36 Score=317.47 Aligned_cols=482 Identities=29% Similarity=0.345 Sum_probs=241.6
Q ss_pred EECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCEEecCC
Q 005267 11 LNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALGLSA 89 (705)
Q Consensus 11 L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~ 89 (705)
+|+++.++. .+|..+..-..++.|++++|.+. ..|..+..+.-+|+.||+++|. .+..|..+ .+++|+.|+++.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~---~~~fp~~it~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQ---ISSFPIQITLLSHLRQLNLSR 77 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccc---cccCCchhhhHHHHhhcccch
Confidence 344444433 34444443334455555555443 2222222333345555555442 22333333 444455555555
Q ss_pred CCCCCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC--CCCCC----------------
Q 005267 90 CNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH--LPWKN---------------- 151 (705)
Q Consensus 90 n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~--~~~~~---------------- 151 (705)
|.+..+|....++.+|+++.|.+|.+. ..|..+..+ .+|+.|+++.|.+...+. ..+..
T Consensus 78 n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~l--knl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg 154 (1081)
T KOG0618|consen 78 NYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISEL--KNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLG 154 (1081)
T ss_pred hhHhhCchhhhhhhcchhheeccchhh-cCchhHHhh--hcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhc
Confidence 555444544444555555555544444 444444444 445555555554444333 22233
Q ss_pred ---CcEEEccCCcCCCCCCCCCCCCcE-EEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCC
Q 005267 152 ---LEFLTLDSNLLQGSLPNLPPHMVQ-LSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGM 227 (705)
Q Consensus 152 ---L~~L~l~~n~~~~~~~~~~~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~ 227 (705)
++.+++..|.+.+.++.....+++ |++.+|.+. . ..+..+.+|+.+....|++... ....++|+.|+.++
T Consensus 155 ~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l---~~~g~~l~~L~a~~ 228 (1081)
T KOG0618|consen 155 QTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL---EISGPSLTALYADH 228 (1081)
T ss_pred cccchhhhhhhhhcccchhcchhhhheeeecccchhh-h--hhhhhccchhhhhhhhcccceE---EecCcchheeeecc
Confidence 444555555555544444334443 555555554 1 2344455555555555554321 11225566666666
Q ss_pred CcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCC
Q 005267 228 NNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP 307 (705)
Q Consensus 228 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 307 (705)
|.+....+. ..-.+|++++++.|+++ .+|+++..+.+|+.++..+|.++ .+|..+...++|+.|.+..|.+. .+|
T Consensus 229 n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip 303 (1081)
T KOG0618|consen 229 NPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIP 303 (1081)
T ss_pred Ccceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCC
Confidence 655522111 11235666666666666 34566666666666666666664 45555555666666666666665 344
Q ss_pred ccccCCCCCCeEeccCcccccccCcccccC--cccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCC
Q 005267 308 ECLGNSTSLSFLDVGNNSLSGPIPEYLGNS--TLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCR 385 (705)
Q Consensus 308 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 385 (705)
......++|++|+|..|++....+.++... ++..++.+.|++.......=...+.|+.|.+.+|.+++..-+.+.+.+
T Consensus 304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK 383 (1081)
T ss_pred CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence 455556666666666666553222222211 345555555555422211112233455555555555544444455555
Q ss_pred CCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccc
Q 005267 386 HLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRR 465 (705)
Q Consensus 386 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~ 465 (705)
+|++|+|++|++.......+.+++.|+.|+|++ |+++ .+|....
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG--------------------------NkL~-~Lp~tva--------- 427 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSG--------------------------NKLT-TLPDTVA--------- 427 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhccc--------------------------chhh-hhhHHHH---------
Confidence 555555555555444444444444444444444 4443 1221111
Q ss_pred cCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCcc-CCc
Q 005267 466 DDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGG-IPS 544 (705)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~ 544 (705)
.+..|++|...+|++. ..| ++.+++.|+.+|+|.|+++.. +|.
T Consensus 428 ----------------------------------~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 428 ----------------------------------NLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred ----------------------------------hhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh
Confidence 1456666777777776 344 677788888888888887643 233
Q ss_pred cccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccC
Q 005267 545 SLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNN 584 (705)
Q Consensus 545 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 584 (705)
... -++|++||+++|.-.-..-+.|..++++...++.-|
T Consensus 472 ~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 472 ALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 332 277888888888754455556666666666666655
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-35 Score=312.75 Aligned_cols=399 Identities=26% Similarity=0.310 Sum_probs=287.2
Q ss_pred CCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCEEecCCCCCCCCChhccCCCCCCEEE
Q 005267 31 NLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALGLSACNISEFPDILKTQHQLDWLD 109 (705)
Q Consensus 31 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 109 (705)
+|+.||+++|.+. .+|..+ ..+.+|+.|+++.|.| ...|... ++.+|+++.|.+|.+..+|..+..+++|+.||
T Consensus 46 ~L~~l~lsnn~~~-~fp~~i-t~l~~L~~ln~s~n~i---~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQI-TLLSHLRQLNLSRNYI---RSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred eeEEeeccccccc-cCCchh-hhHHHHhhcccchhhH---hhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccc
Confidence 3555555555444 444444 4455555555555422 2222222 44555555555555555555555555555555
Q ss_pred ccCCcCCCCCchHHHhc-----------------CCCCccEEECCCCCCCCCCCCCCCCCcE-EEccCCcCCCCCCCCCC
Q 005267 110 LSENQIRGRIPSWMWDI-----------------GVHTLFRLDLSRNFLTSIDHLPWKNLEF-LTLDSNLLQGSLPNLPP 171 (705)
Q Consensus 110 Ls~n~~~~~~~~~l~~l-----------------~~~~L~~L~ls~n~l~~~~~~~~~~L~~-L~l~~n~~~~~~~~~~~ 171 (705)
+++|.+. .+|..+..+ +...++.+++..|.+.+.......+++. |+|.+|.+....-..+.
T Consensus 121 lS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~ 199 (1081)
T KOG0618|consen 121 LSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLA 199 (1081)
T ss_pred cchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhcc
Confidence 5555544 333333222 1133566666666666655544555665 99999998833333388
Q ss_pred CCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcC
Q 005267 172 HMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSG 251 (705)
Q Consensus 172 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 251 (705)
+++.+....|++.... -.-++|+.|+.++|.++ .........+|+++++++|+++ .+|++++.+.+|+.++..+
T Consensus 200 ~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELE----ISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANH 273 (1081)
T ss_pred chhhhhhhhcccceEE----ecCcchheeeeccCcce-eeccccccccceeeecchhhhh-cchHHHHhcccceEecccc
Confidence 9999999999887431 23468999999999998 4444455589999999999999 4569999999999999999
Q ss_pred CcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCC-CCeEeccCccccccc
Q 005267 252 NHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTS-LSFLDVGNNSLSGPI 330 (705)
Q Consensus 252 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~ 330 (705)
|+++ .+|..+...++|+.|++..|.+. -+|....++++|++|+|..|++....+..+.-... |..|+.+.|.+. ..
T Consensus 274 N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~l 350 (1081)
T KOG0618|consen 274 NRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TL 350 (1081)
T ss_pred hhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-cc
Confidence 9997 78888999999999999999998 57778888999999999999998554444444333 778888888876 33
Q ss_pred Ccccc--cCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCC
Q 005267 331 PEYLG--NSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVL 408 (705)
Q Consensus 331 ~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 408 (705)
|..-. .+.|+.|.+.+|.+++.....+.+..+|+.|+|++|++.......+.++..|++|+||+|+++. +|..+..+
T Consensus 351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~ 429 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANL 429 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhh
Confidence 43222 2389999999999999888889999999999999999996656678999999999999999976 56889999
Q ss_pred CCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcc
Q 005267 409 PELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTG 449 (705)
Q Consensus 409 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 449 (705)
+.|++|...+|++.... .. ..++.|+.+|+|.|+++.
T Consensus 430 ~~L~tL~ahsN~l~~fP--e~--~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLLSFP--EL--AQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred hhhHHHhhcCCceeech--hh--hhcCcceEEecccchhhh
Confidence 99999999999986433 22 567888888888888763
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=7.1e-33 Score=279.72 Aligned_cols=364 Identities=27% Similarity=0.359 Sum_probs=267.0
Q ss_pred cCCCCCCEEECCCCCCC-ccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCccCCCC
Q 005267 3 TNLTQLSSLNLADNQLI-GSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPN 81 (705)
Q Consensus 3 ~~l~~L~~L~Ls~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 81 (705)
+-++.++-.|+++|.++ +..|.....++.++.|.|....+. .+|..+ +.|.+|++|.+++|++ .........++.
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L--~~vhGELs~Lp~ 79 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQL--ISVHGELSDLPR 79 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhh--Hhhhhhhccchh
Confidence 34788899999999999 678999999999999999999997 899888 9999999999999953 332222337899
Q ss_pred CCEEecCCCCC--CCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEccC
Q 005267 82 LWALGLSACNI--SEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDS 159 (705)
Q Consensus 82 L~~L~L~~n~l--~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~ 159 (705)
||.+.+..|++ ..+|..+..+..|+.||||+|++. ++|..+... +++-.|+||+|++..++..-+-+|
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A--Kn~iVLNLS~N~IetIPn~lfinL------- 149 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA--KNSIVLNLSYNNIETIPNSLFINL------- 149 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhh--cCcEEEEcccCccccCCchHHHhh-------
Confidence 99999999999 779999999999999999999998 889988877 888888888888877654222222
Q ss_pred CcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCccc-CCCCCCEEEcCCCcCC-cccchh
Q 005267 160 NLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCL-GNSTLENLDLGMNNFQ-GTIPQT 237 (705)
Q Consensus 160 n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~ 237 (705)
..|-.||+|+|++. .+|..+..+.+|++|+|++|.+.-.--..+ ..++|++|.+++.+-+ ..+|.+
T Consensus 150 -----------tDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 150 -----------TDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred -----------HhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence 23344555555555 455556666667777777665532111111 1256666666665432 356777
Q ss_pred ccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCC
Q 005267 238 YAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLS 317 (705)
Q Consensus 238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 317 (705)
+..+.+|..++++.|++. .+|+.+.++++|+.|+|++|+|+ .+....+...+|++|+++.|+++ .+|++++.+++|+
T Consensus 218 ld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred hhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence 777778888888888887 67778888888888888888877 34444555667888888888887 5677888888888
Q ss_pred eEeccCccccc-ccCcccccC-cccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCC
Q 005267 318 FLDVGNNSLSG-PIPEYLGNS-TLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNN 395 (705)
Q Consensus 318 ~L~l~~n~l~~-~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 395 (705)
.|.+.+|+++- -+|..++.. .|+.+..++|.+. ..|+.++.|.+|+.|.|+.|.+. .+|+.+.-++.|++||+..|
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence 88888887652 244444443 6677777766665 66777777777777777777776 56777777777777777777
Q ss_pred cC
Q 005267 396 QI 397 (705)
Q Consensus 396 ~l 397 (705)
.-
T Consensus 373 pn 374 (1255)
T KOG0444|consen 373 PN 374 (1255)
T ss_pred cC
Confidence 53
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2e-32 Score=276.42 Aligned_cols=366 Identities=25% Similarity=0.342 Sum_probs=229.8
Q ss_pred CcEEEcccCCCC-CCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECc
Q 005267 173 MVQLSISNNSLT-GEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLS 250 (705)
Q Consensus 173 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 250 (705)
.+-.|+++|.++ +..|.....+++++.|.|....+. .+|+.++. .+|++|.+++|++. .+-..+..++.|+.+.+.
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhh
Confidence 344455555554 344555555555555555555554 44544444 55555555555554 233445556666666666
Q ss_pred CCcCcC-CCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccc
Q 005267 251 GNHLEG-PLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGP 329 (705)
Q Consensus 251 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 329 (705)
.|++.. -+|..+..+..|++|||++|++. ..|..+..-+++-.|+|++|+|..+....|.+++.|-.|||++|++...
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~L 165 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEML 165 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhc
Confidence 666532 24555666666777777777666 4566666666666777777776655445566666677777777776655
Q ss_pred cCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCC-CCCCccccCCCCCcEEEccCCcCCCCcchhhhCC
Q 005267 330 IPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLE-GPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVL 408 (705)
Q Consensus 330 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 408 (705)
.|..-....|++|+|++|.+.-.--..+..+.+|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..|+.+..+
T Consensus 166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l 244 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL 244 (1255)
T ss_pred CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhh
Confidence 555444556777777777665333344455666777777766543 246777777777777777777774 356667777
Q ss_pred CCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEE
Q 005267 409 PELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISL 488 (705)
Q Consensus 409 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (705)
++|+.|+|++|+++...... ....+|++|++|.|+++ .+|....
T Consensus 245 ~~LrrLNLS~N~iteL~~~~---~~W~~lEtLNlSrNQLt-~LP~avc-------------------------------- 288 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITELNMTE---GEWENLETLNLSRNQLT-VLPDAVC-------------------------------- 288 (1255)
T ss_pred hhhheeccCcCceeeeeccH---HHHhhhhhhccccchhc-cchHHHh--------------------------------
Confidence 77788888877776443221 23457777888888776 3343321
Q ss_pred EecCchHHHhhhhccccEEEccCCcccc-ccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCc
Q 005267 489 TMKGNDIQMERILTTFATIDLSSNRFQG-EISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 567 (705)
Q Consensus 489 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 567 (705)
.++.|+.|.+.+|+++- -||..++.+.+|+++..++|.+. ..|+.+..+..|+.|.|++|++. .+|
T Consensus 289 -----------KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLP 355 (1255)
T KOG0444|consen 289 -----------KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLP 355 (1255)
T ss_pred -----------hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-ech
Confidence 15666667777776652 25666777777777777777776 67777777777777777777776 677
Q ss_pred ccccCCCCCCeEecccCcccccCC
Q 005267 568 TQLASLNYLSVLNLSNNQLEGPIP 591 (705)
Q Consensus 568 ~~l~~l~~L~~L~ls~N~l~g~ip 591 (705)
+.+.-++.|+.||+..|+=--..|
T Consensus 356 eaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 356 EAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhcCCcceeeccCCcCccCCC
Confidence 777777777777777775443333
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2e-23 Score=247.56 Aligned_cols=334 Identities=18% Similarity=0.214 Sum_probs=236.0
Q ss_pred CCCCcEEEcccCC------CCCCCcccccCCC-CCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCC
Q 005267 170 PPHMVQLSISNNS------LTGEIPSSFCNLS-SIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGC 242 (705)
Q Consensus 170 ~~~L~~L~l~~n~------l~~~~~~~~~~l~-~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 242 (705)
+++|+.|.+..+. +...+|..|..++ +|+.|.+.++.+. .+|..+...+|++|++++|.+. .++..+..++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~ 634 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLT 634 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCCccCCcEEECcCcccc-ccccccccCC
Confidence 5566666665442 2234555566553 5888888887765 6677776678888888888876 4566677788
Q ss_pred CCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEecc
Q 005267 243 NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVG 322 (705)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 322 (705)
+|+.|+|+++.....+|. +..+++|++|++++|.....+|..++.+++|+.|++++|...+.+|..+ ++++|+.|+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence 888888887764445553 6778888888888887666778888888888888888876555566554 67888888888
Q ss_pred CcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCC-------CCCCccccCCCCCcEEEccCC
Q 005267 323 NNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLE-------GPLPPSLVNCRHLEVIDVGNN 395 (705)
Q Consensus 323 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~l~~l~~L~~L~L~~n 395 (705)
+|.....+|.. ..+|+.|++++|.+. .+|..+ .+++|+.|.+.++... ...+..+..+++|+.|++++|
T Consensus 713 gc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 713 GCSRLKSFPDI--STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred CCCCccccccc--cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 88665555543 236888888888876 445444 4677777777764321 112222334568888888888
Q ss_pred cCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCccccccc
Q 005267 396 QINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYM 475 (705)
Q Consensus 396 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~ 475 (705)
.....+|.+++.+++|+.|++++|...+.+|... .+++|+.|++++|.....+|..
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~~--------------------- 844 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPDI--------------------- 844 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCcccccccc---------------------
Confidence 8777788888888888888888887655565443 5778888888887654333311
Q ss_pred ccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCee
Q 005267 476 RSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESL 555 (705)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 555 (705)
.++++.|+|++|.++ .+|..+..+++|++|+|++|+-...+|..+..+++|+.|
T Consensus 845 -------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 845 -------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred -------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence 457788888888887 567788888888888888855444677778888888888
Q ss_pred eCCCCc
Q 005267 556 DLSSNK 561 (705)
Q Consensus 556 ~Ls~N~ 561 (705)
++++|.
T Consensus 899 ~l~~C~ 904 (1153)
T PLN03210 899 DFSDCG 904 (1153)
T ss_pred ecCCCc
Confidence 888885
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.7e-23 Score=248.23 Aligned_cols=340 Identities=18% Similarity=0.251 Sum_probs=272.6
Q ss_pred CcccccCCCCCcEEEcccCcC------CccCCcccCC--CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCC
Q 005267 187 IPSSFCNLSSIQYLYLSNNSL------SGQIPQCLGN--STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPL 258 (705)
Q Consensus 187 ~~~~~~~l~~L~~L~ls~n~~------~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (705)
.+.+|.++++|+.|.+..+.. ...+|..+.. .+|+.|.+.++.+. .+|..| ...+|++|++++|++. .+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence 345688999999999976542 2345655544 67999999999887 567666 4689999999999998 57
Q ss_pred CccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccCc
Q 005267 259 PPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNST 338 (705)
Q Consensus 259 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 338 (705)
+..+..+++|+.|+++++.....+|. ++.+++|+.|++++|.....+|..+.++++|+.|++++|.....+|......+
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~s 705 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKS 705 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCC
Confidence 78889999999999998876556774 88899999999999987778899999999999999999876667787766679
Q ss_pred ccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcC-------CCCcchhhhCCCCC
Q 005267 339 LEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQI-------NETFPHWLDVLPEL 411 (705)
Q Consensus 339 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-------~~~~~~~~~~l~~L 411 (705)
|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|+.|++.++.. ....+......++|
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 999999999766666643 457899999999987 566554 678899998887542 11222233446799
Q ss_pred CEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEec
Q 005267 412 QVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMK 491 (705)
Q Consensus 412 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (705)
+.|++++|...+.+|... ..+++|+.|++++|...+.+|...
T Consensus 781 ~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------ 822 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGI------------------------------------ 822 (1153)
T ss_pred hheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence 999999998877777765 678999999999987655555321
Q ss_pred CchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCccccc
Q 005267 492 GNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLA 571 (705)
Q Consensus 492 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 571 (705)
.+++|+.|++++|.....+|.. .++|++|+|++|.++ .+|.++..+++|+.|+|++|+-...+|..+.
T Consensus 823 --------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 823 --------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred --------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 1678999999998765555543 468999999999999 6899999999999999999765557888889
Q ss_pred CCCCCCeEecccCc
Q 005267 572 SLNYLSVLNLSNNQ 585 (705)
Q Consensus 572 ~l~~L~~L~ls~N~ 585 (705)
.+++|+.+++++|.
T Consensus 891 ~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 891 KLKHLETVDFSDCG 904 (1153)
T ss_pred cccCCCeeecCCCc
Confidence 99999999999985
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=4.3e-27 Score=226.53 Aligned_cols=421 Identities=19% Similarity=0.205 Sum_probs=274.2
Q ss_pred EEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEc-CCCcCC
Q 005267 154 FLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDL-GMNNFQ 231 (705)
Q Consensus 154 ~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L-~~n~l~ 231 (705)
.++.++-.++......++..+.++|..|+|+...+.+|+.+++|+.||||+|.|+...|+.|.. .++.+|-+ ++|+|+
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 4556666666666666889999999999999888899999999999999999999888888865 66665555 449999
Q ss_pred cccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCC------
Q 005267 232 GTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGP------ 305 (705)
Q Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------ 305 (705)
......|+++..|+.|.+.-|++.....+.|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+...
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 88888999999999999999999988889999999999999999998854444788899999999998874311
Q ss_pred ------CCccccCCCCCCeEeccCcccccccCcccccCcccEE---EcCCCccccccc-ccccCCCCccEEEccCCcCCC
Q 005267 306 ------IPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVL---DMRMNKFSGSLP-QTFGKSCVLVSLKLNGNRLEG 375 (705)
Q Consensus 306 ------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L---~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~ 375 (705)
.|-.++......-..+.+.++....+.-+... ++.+ -.+.+...+..| ..|..+++|+.|+|++|++++
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~-~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS-LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh-HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 11112222222222223333322222222211 2222 122232333333 568888889999999999988
Q ss_pred CCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHh
Q 005267 376 PLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWY 455 (705)
Q Consensus 376 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~ 455 (705)
+-+.+|.+...+++|.|..|++..+....|.++..|++|+|.+|+++...|..+ ..+.+|.+|.+-.|.+-..--..+
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--~~~~~l~~l~l~~Np~~CnC~l~w 366 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--QTLFSLSTLNLLSNPFNCNCRLAW 366 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc--cccceeeeeehccCcccCccchHH
Confidence 888888888889999999998887777888888899999999998887777665 556788888888887765443333
Q ss_pred hhhc-cccccccCCc-ccccccccccccceeeEEEEecCchHH-------Hhhhhcccc-EEEccCCccccccchhhhcC
Q 005267 456 LNGF-KAMMRRDDNS-IEVNYMRSLNYSYYESISLTMKGNDIQ-------MERILTTFA-TIDLSSNRFQGEISEVLGKL 525 (705)
Q Consensus 456 ~~~~-~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~L~-~L~Ls~n~l~~~~~~~l~~l 525 (705)
+..+ .+-....... ..+..+..+.......-.....+.+.. ....++-+. +..-|+..+. .+|..+ -
T Consensus 367 l~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i--P 443 (498)
T KOG4237|consen 367 LGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI--P 443 (498)
T ss_pred HHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC--C
Confidence 3321 1111111111 111111111111100000000010000 000011111 1223333333 333222 1
Q ss_pred CCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccC
Q 005267 526 NSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNN 584 (705)
Q Consensus 526 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 584 (705)
....+|++.+|.++ .+|.. .+.+| .+|+++|+++..--..|.++++|.+|-+++|
T Consensus 444 ~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 444 VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 34567888888888 66666 56777 8888888888777778888888888888876
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=7.5e-22 Score=216.93 Aligned_cols=223 Identities=30% Similarity=0.372 Sum_probs=125.3
Q ss_pred CCCCEEecCCCCCCCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEccC
Q 005267 80 PNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDS 159 (705)
Q Consensus 80 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~ 159 (705)
++|++|++++|++..+|.. .++|+.|++++|.++ .+|... ++|+.|++++|.++.++. ..++|+.|++++
T Consensus 242 ~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~-~Lp~lp-----~~L~~L~Ls~N~Lt~LP~-~p~~L~~LdLS~ 311 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT-HLPALP-----SGLCKLWIFGNQLTSLPV-LPPGLQELSVSD 311 (788)
T ss_pred CCCcEEEecCCccCcccCc---ccccceeeccCCchh-hhhhch-----hhcCEEECcCCccccccc-cccccceeECCC
Confidence 4445555555544444432 234455555555444 223211 344455555555544332 234555555555
Q ss_pred CcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhcc
Q 005267 160 NLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYA 239 (705)
Q Consensus 160 n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 239 (705)
|++++ +|..+.+|+.|++++|.+++ +|.. ..+|++|++++|++++ +|.. ..+|+.|++++|.++. +|..
T Consensus 312 N~L~~-Lp~lp~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l--p~~L~~L~Ls~N~L~~-LP~l-- 380 (788)
T PRK15387 312 NQLAS-LPALPSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL--PSELYKLWAYNNRLTS-LPAL-- 380 (788)
T ss_pred Ccccc-CCCCcccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC--Ccccceehhhcccccc-Cccc--
Confidence 55553 33344556666666666653 3321 1356666666666653 3332 2456666666666663 3432
Q ss_pred CCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeE
Q 005267 240 KGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFL 319 (705)
Q Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 319 (705)
..+|+.|++++|++++ +|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|.++ .+|..+.++++|+.|
T Consensus 381 -~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L 450 (788)
T PRK15387 381 -PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTV 450 (788)
T ss_pred -ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence 2457777777777773 4432 2567777777777764 4543 245677778888777 567777777888888
Q ss_pred eccCcccccccCcc
Q 005267 320 DVGNNSLSGPIPEY 333 (705)
Q Consensus 320 ~l~~n~l~~~~~~~ 333 (705)
++++|++++..+..
T Consensus 451 dLs~N~Ls~~~~~~ 464 (788)
T PRK15387 451 NLEGNPLSERTLQA 464 (788)
T ss_pred ECCCCCCCchHHHH
Confidence 88888877665543
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=3.3e-24 Score=206.72 Aligned_cols=390 Identities=20% Similarity=0.180 Sum_probs=242.6
Q ss_pred cEEEccCCcCCCCCCCC---CCCCcEEEcccCCCCCCCcccccCCCCCcEEEccc-CcCCccCCcccCC-CCCCEEEcCC
Q 005267 153 EFLTLDSNLLQGSLPNL---PPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSN-NSLSGQIPQCLGN-STLENLDLGM 227 (705)
Q Consensus 153 ~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~-n~~~~~~~~~~~~-~~L~~L~L~~ 227 (705)
.+++|+.|.|+...+.. +++|++|||++|.|+.+-|.+|.++++|..|-+.+ |+|+......|+. ..++.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 34444444444333222 46778888888888888889999998888877666 8888655556655 8888899999
Q ss_pred CcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCC------------CCCCccccCCCCCcEE
Q 005267 228 NNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLS------------GPIPECLGNSTRLSFL 295 (705)
Q Consensus 228 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L 295 (705)
|++.-...+.|..+++|..|.+.+|.+..+--..|..+..++++.+..|.+- -..|..++......-.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 9988888889999999999999999988443348888999999998888732 1223334444444444
Q ss_pred EccCccccCCCCccccCC-CCCCeEeccCcccccccCc-cc-ccCcccEEEcCCCcccccccccccCCCCccEEEccCCc
Q 005267 296 DVRNNNLSGPIPECLGNS-TSLSFLDVGNNSLSGPIPE-YL-GNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNR 372 (705)
Q Consensus 296 ~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~-~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 372 (705)
.+.+.++..+-+..|... .++..--.+.+...+.-|. .| ...+|+.|++++|+++++-+.+|.....+++|.|..|+
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 444555544433333221 1121111222222223332 22 23377777777777777777777777777777777777
Q ss_pred CCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCC-------------CCCCC-CCCCCcc
Q 005267 373 LEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIG-------------DTKTR-VPFPKLR 438 (705)
Q Consensus 373 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~~-~~~~~L~ 438 (705)
+...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.|-.|++...-- ..... .....++
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~ 389 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVR 389 (498)
T ss_pred HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhc
Confidence 776555667777777777777777777777777777777777777776632100 00000 1123566
Q ss_pred EEEccCCcCccc---CChHhhhhccccccccCCccc--ccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCc
Q 005267 439 IIDLSYNQFTGV---LPIWYLNGFKAMMRRDDNSIE--VNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNR 513 (705)
Q Consensus 439 ~L~ls~n~l~~~---~p~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 513 (705)
.+++++..+... .|.+. ......... ...+. ..+..+.++.......++...++|++.+|.
T Consensus 390 ~~~~~dv~~~~~~c~~~ee~-------~~~~s~~cP~~c~c~~-------tVvRcSnk~lk~lp~~iP~d~telyl~gn~ 455 (498)
T KOG4237|consen 390 QIPISDVAFGDFRCGGPEEL-------GCLTSSPCPPPCTCLD-------TVVRCSNKLLKLLPRGIPVDVTELYLDGNA 455 (498)
T ss_pred cccchhccccccccCCcccc-------CCCCCCCCCCCcchhh-------hhHhhcccchhhcCCCCCchhHHHhcccch
Confidence 666666654321 11110 000000000 00000 000111111112222346677899999999
Q ss_pred cccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCC
Q 005267 514 FQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSN 560 (705)
Q Consensus 514 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 560 (705)
++ .+|.. .+.+| .+|+|+|+++..--..|.++++|.+|-||+|
T Consensus 456 ~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 456 IT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 98 55655 67788 8999999999777889999999999999987
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=7e-21 Score=209.33 Aligned_cols=263 Identities=28% Similarity=0.339 Sum_probs=138.9
Q ss_pred CCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCccCCCCCCEEec
Q 005267 8 LSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGL 87 (705)
Q Consensus 8 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 87 (705)
-..||++++.++ .+|..+. ++|+.|++++|.++ .+|. ..++|++|++++|++... |. ..++|++|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL---P~--lp~sL~~L~L 269 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL---PV--LPPGLLELSI 269 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc---cC--cccccceeec
Confidence 345666666655 4555443 25666666666665 4442 235566666666644322 21 1245666666
Q ss_pred CCCCCCCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEccCCcCCCCCC
Q 005267 88 SACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLP 167 (705)
Q Consensus 88 ~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~ 167 (705)
++|.+..+|..+ ++|+.|++++|+++ .+|.. . ++|+.|++++|.+++++. ...+|+.|++++|.+++ +|
T Consensus 270 s~N~L~~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p--~~L~~LdLS~N~L~~Lp~-lp~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 270 FSNPLTHLPALP---SGLCKLWIFGNQLT-SLPVL---P--PGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred cCCchhhhhhch---hhcCEEECcCCccc-ccccc---c--cccceeECCCCccccCCC-CcccccccccccCcccc-cc
Confidence 666665555422 34556666666655 33331 1 456666666666655432 22345556666666653 44
Q ss_pred CCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEE
Q 005267 168 NLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYL 247 (705)
Q Consensus 168 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 247 (705)
..+.+|++|++++|++++ +|.. .++|+.|++++|.+. .+|... .+|+.|++++|.+++ +|.. .++|+.|
T Consensus 339 ~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~--~~L~~LdLs~N~Lt~-LP~l---~s~L~~L 407 (788)
T PRK15387 339 TLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP--SGLKELIVSGNRLTS-LPVL---PSELKEL 407 (788)
T ss_pred ccccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCcccc--cccceEEecCCcccC-CCCc---ccCCCEE
Confidence 445556666666666653 3332 234555666666655 244322 356666666666653 3322 2356666
Q ss_pred ECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccc
Q 005267 248 RLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECL 310 (705)
Q Consensus 248 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 310 (705)
++++|.++. +|.. ..+|+.|++++|+++ .+|..+.++++|+.|++++|.+++..+..+
T Consensus 408 dLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 408 MVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred EccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 666666653 4432 234555666666665 455556666666666666666665544444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=9.9e-20 Score=201.81 Aligned_cols=246 Identities=28% Similarity=0.385 Sum_probs=125.6
Q ss_pred CCCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCccCCCCCCEEe
Q 005267 7 QLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALG 86 (705)
Q Consensus 7 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (705)
+.+.|+++++.++ .+|..+. ++|+.|+|++|.++ .+|..++ .+|++|++++|++. .+|... ..+|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt---sLP~~l-~~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT---SIPATL-PDTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc---cCChhh-hccccEEE
Confidence 3455666666655 3444332 35666666666665 5554442 35666666665332 222211 13455555
Q ss_pred cCCCCCCCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEccCCcCCCCC
Q 005267 87 LSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSL 166 (705)
Q Consensus 87 L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~ 166 (705)
+++|.+..+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.+++++.
T Consensus 248 Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~----~sL~~L~Ls~N~Lt~LP~-------------------- 300 (754)
T PRK15370 248 LSINRITELPERLP--SALQSLDLFHNKIS-CLPENLP----EELRYLSVYDNSIRTLPA-------------------- 300 (754)
T ss_pred CcCCccCcCChhHh--CCCCEEECcCCccC-ccccccC----CCCcEEECCCCccccCcc--------------------
Confidence 55555555554433 34555555555555 3443221 345555555554444322
Q ss_pred CCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCE
Q 005267 167 PNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTY 246 (705)
Q Consensus 167 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 246 (705)
..+++|+.|++++|.++. +|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|++
T Consensus 301 -~lp~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~-~sL~~L~Ls~N~L~-~LP~~lp--~~L~~ 371 (754)
T PRK15370 301 -HLPSGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP-PELQVLDVSKNQIT-VLPETLP--PTITT 371 (754)
T ss_pred -cchhhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc-CcccEEECCCCCCC-cCChhhc--CCcCE
Confidence 223445555555555552 333221 355556666665553 343322 45666666666655 3444332 45666
Q ss_pred EECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCcc----ccCCCCCcEEEccCcccc
Q 005267 247 LRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPEC----LGNSTRLSFLDVRNNNLS 303 (705)
Q Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~ 303 (705)
|++++|+++ .+|..+. ..|+.|++++|++. .+|.. +..++.+..|++.+|.+.
T Consensus 372 LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 372 LDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred EECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 666666666 3444332 25666666666665 33433 233466677777777665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=1.2e-18 Score=193.16 Aligned_cols=225 Identities=28% Similarity=0.403 Sum_probs=156.8
Q ss_pred CCCEEecCCCCCCCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEccCC
Q 005267 81 NLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSN 160 (705)
Q Consensus 81 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n 160 (705)
+|+.|++++|.+..+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.+..++..-..+|+.|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~----~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP----DTIQEMELSINRITELPERLPSALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh----ccccEEECcCCccCcCChhHhCCCCEEECcCC
Confidence 45555555555555554432 35666666666555 3444332 34566666666655443333345677777777
Q ss_pred cCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccC
Q 005267 161 LLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAK 240 (705)
Q Consensus 161 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 240 (705)
.++......+++|+.|++++|.+++ +|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.+++ +|..+.
T Consensus 273 ~L~~LP~~l~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~-~sL~~L~Ls~N~Lt~-LP~~l~- 345 (754)
T PRK15370 273 KISCLPENLPEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETLP-PGLKTLEAGENALTS-LPASLP- 345 (754)
T ss_pred ccCccccccCCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCcccc-ccceeccccCCcccc-CChhhc-
Confidence 7664322235688999999998884 555443 479999999999984 554332 789999999999985 566554
Q ss_pred CCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCcc----ccCCCCC
Q 005267 241 GCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPEC----LGNSTSL 316 (705)
Q Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L 316 (705)
++|+.|++++|+++ .+|..+ .++|++|++++|.++ .+|..+. ..|+.|++++|.+. .+|.. +..++.+
T Consensus 346 -~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l 417 (754)
T PRK15370 346 -PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQP 417 (754)
T ss_pred -CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCc
Confidence 68999999999998 567655 368999999999998 4666554 47999999999998 44544 3455889
Q ss_pred CeEeccCcccc
Q 005267 317 SFLDVGNNSLS 327 (705)
Q Consensus 317 ~~L~l~~n~l~ 327 (705)
..+++.+|.++
T Consensus 418 ~~L~L~~Npls 428 (754)
T PRK15370 418 TRIIVEYNPFS 428 (754)
T ss_pred cEEEeeCCCcc
Confidence 99999999986
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=5.3e-19 Score=182.87 Aligned_cols=83 Identities=25% Similarity=0.291 Sum_probs=46.3
Q ss_pred EEECcCCcCc-CCCCccCCCCCcCcEEEccCCcCCCC----CCccccCCCCCcEEEccCccccC------CCCccccCCC
Q 005267 246 YLRLSGNHLE-GPLPPSLSNCVNLQVLDVGNNNLSGP----IPECLGNSTRLSFLDVRNNNLSG------PIPECLGNST 314 (705)
Q Consensus 246 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~l~ 314 (705)
.|+|..+.++ ......+..+.+|+.++++++.++.. ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666665 23344455566677777777776432 33344555667777776666542 1223344555
Q ss_pred CCCeEeccCccccc
Q 005267 315 SLSFLDVGNNSLSG 328 (705)
Q Consensus 315 ~L~~L~l~~n~l~~ 328 (705)
+|+.|++++|.+.+
T Consensus 82 ~L~~L~l~~~~~~~ 95 (319)
T cd00116 82 GLQELDLSDNALGP 95 (319)
T ss_pred ceeEEEccCCCCCh
Confidence 66666666655543
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=7.5e-19 Score=181.74 Aligned_cols=106 Identities=25% Similarity=0.232 Sum_probs=76.6
Q ss_pred EEEcCCCcCC-cccchhccCCCCCCEEECcCCcCcCC----CCccCCCCCcCcEEEccCCcCCC------CCCccccCCC
Q 005267 222 NLDLGMNNFQ-GTIPQTYAKGCNLTYLRLSGNHLEGP----LPPSLSNCVNLQVLDVGNNNLSG------PIPECLGNST 290 (705)
Q Consensus 222 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~ 290 (705)
.|+|..+.++ ......+..+.+|++|+++++.++.. ++..+...+++++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777776 34556667777899999999988532 45566677889999999887762 2334567788
Q ss_pred CCcEEEccCccccCCCCccccCCCC---CCeEeccCcccc
Q 005267 291 RLSFLDVRNNNLSGPIPECLGNSTS---LSFLDVGNNSLS 327 (705)
Q Consensus 291 ~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~l~~n~l~ 327 (705)
+|+.|++++|.+.+..+..+..+.+ |+.|++++|++.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 9999999999887655555554444 777777777765
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=1.9e-15 Score=167.54 Aligned_cols=118 Identities=36% Similarity=0.622 Sum_probs=105.2
Q ss_pred cccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecc
Q 005267 503 TFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS 582 (705)
Q Consensus 503 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 582 (705)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCC--CCCCCCCCcccCCCCCCCCCCCCCCC
Q 005267 583 NNQLEGPIPGGP--QFNTFGIDSYSGNVGLCGFPLSKICR 620 (705)
Q Consensus 583 ~N~l~g~ip~~~--~~~~~~~~~~~~n~~lcg~~~~~~c~ 620 (705)
+|+++|.+|... .+.......+.+|+.+||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999642 12223345678999999987655673
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.3e-17 Score=142.97 Aligned_cols=180 Identities=32% Similarity=0.588 Sum_probs=113.2
Q ss_pred CCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEE
Q 005267 361 CVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRII 440 (705)
Q Consensus 361 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 440 (705)
..++.|.+++|+++ .+|+.+..+.+|++|++++|++.+ .|..++.+++|+.|++.-|++.. .|..+ ..+|.|+.|
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~-lprgf--gs~p~levl 107 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNI-LPRGF--GSFPALEVL 107 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhc-Ccccc--CCCchhhhh
Confidence 33444444555544 334444555555555555555533 33345555555555555554431 22222 445566666
Q ss_pred EccCCcCccc-CChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccc
Q 005267 441 DLSYNQFTGV-LPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEIS 519 (705)
Q Consensus 441 ~ls~n~l~~~-~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 519 (705)
|+++|++... +|..++. ++.|+.|+|++|.+. .+|
T Consensus 108 dltynnl~e~~lpgnff~-------------------------------------------m~tlralyl~dndfe-~lp 143 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFY-------------------------------------------MTTLRALYLGDNDFE-ILP 143 (264)
T ss_pred hccccccccccCCcchhH-------------------------------------------HHHHHHHHhcCCCcc-cCC
Confidence 6666655422 2333221 677888899999987 678
Q ss_pred hhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCC---CCeEecccCcccccCC
Q 005267 520 EVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNY---LSVLNLSNNQLEGPIP 591 (705)
Q Consensus 520 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~ls~N~l~g~ip 591 (705)
..++++++|+.|.+..|.+. ..|..++.++.|++|.+.+|+++ .+|..++++.- =+.+.+.+|++..+|.
T Consensus 144 ~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 144 PDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred hhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 88999999999999999998 78999999999999999999998 66666666542 2345566677665554
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=4e-17 Score=140.00 Aligned_cols=160 Identities=33% Similarity=0.480 Sum_probs=86.8
Q ss_pred cCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcE
Q 005267 215 LGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSF 294 (705)
Q Consensus 215 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 294 (705)
+....++.|.+++|+++ ..|..++.+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 33344445555555555 34444555555666666655555 45555555555555555555554 45555555555555
Q ss_pred EEccCccccC-CCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcC
Q 005267 295 LDVRNNNLSG-PIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRL 373 (705)
Q Consensus 295 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 373 (705)
||+..|++.. .+|..|..++.|+.|++++|. +. .+|...+.+++|+.|.+.+|.+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dnd-----------------------fe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDND-----------------------FE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCC-----------------------cc-cCChhhhhhcceeEEeeccCch
Confidence 5555555442 234444444444444444444 43 4455555556666666666655
Q ss_pred CCCCCccccCCCCCcEEEccCCcCCCCcc
Q 005267 374 EGPLPPSLVNCRHLEVIDVGNNQINETFP 402 (705)
Q Consensus 374 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 402 (705)
. .+|..++.++.|++|.+.+|+++-..|
T Consensus 163 l-~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 163 L-SLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred h-hCcHHHHHHHHHHHHhcccceeeecCh
Confidence 5 455666666666666666666654433
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.29 E-value=1.3e-11 Score=137.28 Aligned_cols=114 Identities=33% Similarity=0.518 Sum_probs=101.9
Q ss_pred CccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccc
Q 005267 436 KLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQ 515 (705)
Q Consensus 436 ~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 515 (705)
.++.|+|++|.+.|.+|..+.. +++|+.|+|++|.++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~-------------------------------------------L~~L~~L~Ls~N~l~ 455 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK-------------------------------------------LRHLQSINLSGNSIR 455 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC-------------------------------------------CCCCCEEECCCCccc
Confidence 4788999999999988865321 788999999999999
Q ss_pred cccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCC-CCCCeEecccCcccccCCC
Q 005267 516 GEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASL-NYLSVLNLSNNQLEGPIPG 592 (705)
Q Consensus 516 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~ 592 (705)
|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|+|++|+++|.+|..+..+ ..+..+++.+|+..|.+|.
T Consensus 456 g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999998764 4678899999987766653
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=8.9e-11 Score=124.93 Aligned_cols=178 Identities=38% Similarity=0.510 Sum_probs=112.5
Q ss_pred CCCcEEEccCCcCCCCCCCC--C-CCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCccc-CCCCCCEEEc
Q 005267 150 KNLEFLTLDSNLLQGSLPNL--P-PHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCL-GNSTLENLDL 225 (705)
Q Consensus 150 ~~L~~L~l~~n~~~~~~~~~--~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~-~~~~L~~L~L 225 (705)
+.++.|++.+|.++...+.. . ++|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|... ..+.|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 44555555555555433333 2 25666666666666 44456677777777777777776 444444 4477777777
Q ss_pred CCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCC
Q 005267 226 GMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGP 305 (705)
Q Consensus 226 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 305 (705)
++|++. .+|........|+++.+++|.+. ..+..+.++.++..+.+.+|++.. .+..++.+++++.|++++|.++..
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccc
Confidence 777776 44544445555777777777543 345566677777777777777653 355666777777777777777744
Q ss_pred CCccccCCCCCCeEeccCcccccccCccc
Q 005267 306 IPECLGNSTSLSFLDVGNNSLSGPIPEYL 334 (705)
Q Consensus 306 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 334 (705)
.+ +..+.+++.|++++|.+....+...
T Consensus 271 ~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 271 SS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cc--ccccCccCEEeccCccccccchhhh
Confidence 33 6777777777777777765555443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=3.7e-12 Score=129.73 Aligned_cols=129 Identities=33% Similarity=0.527 Sum_probs=77.5
Q ss_pred EEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCc
Q 005267 175 QLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNH 253 (705)
Q Consensus 175 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (705)
.++++.|+++ ..|..++.++ |+.|-+++|+++ .+|+.++. ..|..||.+.|++. .+|..++.+.+|+.|.+..|+
T Consensus 125 ~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 125 FLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred Hhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhh
Confidence 3333333333 4445555554 566666666655 44544444 56666666666665 456666667777777777777
Q ss_pred CcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCcccc
Q 005267 254 LEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLG 311 (705)
Q Consensus 254 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 311 (705)
+. .+|..+..+ .|..||++.|+++ .+|-.|.+|+.|++|-|.+|.+. ..|..++
T Consensus 201 l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 201 LE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred hh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 76 455555533 4667777777776 56777777777777777777776 3344443
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=1.8e-11 Score=114.92 Aligned_cols=87 Identities=33% Similarity=0.446 Sum_probs=68.5
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcC-cccccCCCCCCeE
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRI-PTQLASLNYLSVL 579 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L 579 (705)
+++|+.||||+|.++ .+.+.-..+.+.++|+|+.|.+... +.++++-+|..||+++|+|.... -..++++|-|+++
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 677888888888876 3344445677889999999988754 67888889999999999987422 2467889999999
Q ss_pred ecccCcccccC
Q 005267 580 NLSNNQLEGPI 590 (705)
Q Consensus 580 ~ls~N~l~g~i 590 (705)
.+.+|++.+.+
T Consensus 405 ~L~~NPl~~~v 415 (490)
T KOG1259|consen 405 RLTGNPLAGSV 415 (490)
T ss_pred hhcCCCccccc
Confidence 99999998754
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=2.7e-12 Score=130.69 Aligned_cols=189 Identities=36% Similarity=0.477 Sum_probs=129.8
Q ss_pred EEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCc
Q 005267 199 YLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNN 277 (705)
Q Consensus 199 ~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 277 (705)
..|++.|++. .+|..+.. ..|+.+.+..|.+. .+|..++++..|++++|+.|+++ .+|..++.|+ |+.|-+++|+
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 3445555444 33333322 44555555555554 56777778888888888888887 6677777665 7888888888
Q ss_pred CCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccc
Q 005267 278 LSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTF 357 (705)
Q Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 357 (705)
++ .+|..++....|..||.+.|.+. .+|..++.+.+|+.|.+..|++.. +|+......|..||++.|+++ .+|-.|
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~LpLi~lDfScNkis-~iPv~f 230 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLPLIRLDFSCNKIS-YLPVDF 230 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCceeeeecccCcee-ecchhh
Confidence 87 67777887788888888888887 456778888888888888888874 444444557888888888887 678888
Q ss_pred cCCCCccEEEccCCcCCCCCCcccc---CCCCCcEEEccCCc
Q 005267 358 GKSCVLVSLKLNGNRLEGPLPPSLV---NCRHLEVIDVGNNQ 396 (705)
Q Consensus 358 ~~~~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~ 396 (705)
.+|..|++|-|.+|.+. ..|..++ ...=-++|+..-|+
T Consensus 231 r~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 88888888888888887 3443332 22223566666663
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=1e-11 Score=119.64 Aligned_cols=177 Identities=27% Similarity=0.309 Sum_probs=89.5
Q ss_pred hhccCCCCCCEEECcCCcCcCC----CCccCCCCCcCcEEEccCC---cCCCCCCcc-------ccCCCCCcEEEccCcc
Q 005267 236 QTYAKGCNLTYLRLSGNHLEGP----LPPSLSNCVNLQVLDVGNN---NLSGPIPEC-------LGNSTRLSFLDVRNNN 301 (705)
Q Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n---~l~~~~~~~-------~~~l~~L~~L~L~~n~ 301 (705)
+....+..++.++|++|.+... +...+.+.++|+..++++- +....+|+. +..+++|++|+||+|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3445667788888888877532 3345566777888877753 222233332 3455677777777777
Q ss_pred ccCCCCcc----ccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCC-
Q 005267 302 LSGPIPEC----LGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGP- 376 (705)
Q Consensus 302 l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~- 376 (705)
+....+.. +.++..|++|.|.+|.+.-.....++. .|..|. . ....+.-+.|+++...+|++...
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~-al~~l~--~-------~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR-ALFELA--V-------NKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH-HHHHHH--H-------HhccCCCcceEEEEeecccccccc
Confidence 76444332 345667777777777653211111000 111111 0 01122234455555555555432
Q ss_pred ---CCccccCCCCCcEEEccCCcCCCC----cchhhhCCCCCCEEEccCCcCc
Q 005267 377 ---LPPSLVNCRHLEVIDVGNNQINET----FPHWLDVLPELQVLTLRSNRFC 422 (705)
Q Consensus 377 ---~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 422 (705)
+...|..++.|+.+.+..|.|... ....+..+++|++|+|++|.|+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 112344455555555555555321 1223445555555555555543
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=2.5e-10 Score=121.44 Aligned_cols=178 Identities=34% Similarity=0.501 Sum_probs=91.9
Q ss_pred CCCCCEEecCCCCCCCCChhccCCC-CCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCCC--CCCCCcEE
Q 005267 79 FPNLWALGLSACNISEFPDILKTQH-QLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHL--PWKNLEFL 155 (705)
Q Consensus 79 l~~L~~L~L~~n~l~~lp~~l~~l~-~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L 155 (705)
++.++.|++.+|.+.++|......+ +|+.|++++|++. .+|..+..+ +.|+.|++++|.++..... ..++|+.|
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l--~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNL--PNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhcc--ccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 3455555555555555555555443 5555555555554 333344444 5555555555555554442 44444444
Q ss_pred EccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCccc
Q 005267 156 TLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTI 234 (705)
Q Consensus 156 ~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~ 234 (705)
++ ++|.+. .+|........|+++.+++|.+. ..+..+.. .++..+.+.+|++. ..
T Consensus 192 ~l---------------------s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 192 DL---------------------SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred ec---------------------cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 44 444444 33333333344555555555332 22222222 44555555555544 22
Q ss_pred chhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCcc
Q 005267 235 PQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPEC 285 (705)
Q Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 285 (705)
+..++.++++++|++++|.++.. +. ++.+.+++.|++++|.+....+..
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence 45566666677777777777633 22 666677777777777666554443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.2e-11 Score=120.48 Aligned_cols=205 Identities=25% Similarity=0.236 Sum_probs=111.2
Q ss_pred CCCCCCEEECCCCCCCccCC--ccCcCCCCCCEEeCCCCCCccccC-cccccCCCCCCEEEccCCCCcceecccCccCCC
Q 005267 4 NLTQLSSLNLADNQLIGSIP--SSIFELVNLTFVSLSFNNFSGSVE-LYDFAKLKNLKYLILSNISLSVSTKLTVNSSFP 80 (705)
Q Consensus 4 ~l~~L~~L~Ls~n~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~i~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 80 (705)
+++.|+.+.|.++.+. ..+ .....|++++.||||+|-+..-.+ ..+...|++|+.|+|+.|.+.....-.....++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4566777777777654 222 345667777888888776652211 223366777778877777443222221122567
Q ss_pred CCCEEecCCCCC--CCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC----CCCCCCcE
Q 005267 81 NLWALGLSACNI--SEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH----LPWKNLEF 154 (705)
Q Consensus 81 ~L~~L~L~~n~l--~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~----~~~~~L~~ 154 (705)
+|+.|.++.|.+ .++-.....+|+|+.|+|..|............+ +.|++|||++|.+...+. +.++.|+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~--~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL--QTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh--hHHhhccccCCcccccccccccccccchhh
Confidence 777777777777 3344445667777777777774222222222222 566777777776655542 44555555
Q ss_pred EEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCccc-----ccCCCCCcEEEcccCcCCc--cCCcccCCCCCCEEEcCC
Q 005267 155 LTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSS-----FCNLSSIQYLYLSNNSLSG--QIPQCLGNSTLENLDLGM 227 (705)
Q Consensus 155 L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~ls~n~~~~--~~~~~~~~~~L~~L~L~~ 227 (705)
|+++.+.+... ..|+. ...+++|++|++..|++.. .........+|+.|.+..
T Consensus 276 Lnls~tgi~si--------------------~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 276 LNLSSTGIASI--------------------AEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred hhccccCcchh--------------------cCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 55555444321 11111 2345666666766666631 111112225666666666
Q ss_pred CcCC
Q 005267 228 NNFQ 231 (705)
Q Consensus 228 n~l~ 231 (705)
|.+.
T Consensus 336 n~ln 339 (505)
T KOG3207|consen 336 NYLN 339 (505)
T ss_pred cccc
Confidence 6555
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.1e-11 Score=120.72 Aligned_cols=210 Identities=24% Similarity=0.227 Sum_probs=98.8
Q ss_pred cCCCCCCEEEccCCCCcceecccCccCCCCCCEEecCCCCCCCC---ChhccCCCCCCEEEccCCcCCCCCchHHHhcCC
Q 005267 52 AKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEF---PDILKTQHQLDWLDLSENQIRGRIPSWMWDIGV 128 (705)
Q Consensus 52 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l---p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~ 128 (705)
+++.+|+.+.|.++.....+.-...-.|++++.|||+.|-+..+ -.....+|+|+.|+|+.|++.....+ ......
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-NTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-cchhhh
Confidence 44556666666655332222111111566666666666655222 23345566666666666655422111 111122
Q ss_pred CCccEEECCCCCCCCCCC----CCCCCCcEEEccCCcCCCCC---CCCCCCCcEEEcccCCCCCCC-cccccCCCCCcEE
Q 005267 129 HTLFRLDLSRNFLTSIDH----LPWKNLEFLTLDSNLLQGSL---PNLPPHMVQLSISNNSLTGEI-PSSFCNLSSIQYL 200 (705)
Q Consensus 129 ~~L~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L 200 (705)
++|+.|.++.|.++.-.. ..|++|+.|++.+|...... .+.+..|+.|||++|.+.... -...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 555666666665553221 34555555555555311111 111444555555555544211 0223445555555
Q ss_pred EcccCcCCcc-CCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCC-CCccCCCCCcCcEEEccCCcC
Q 005267 201 YLSNNSLSGQ-IPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGP-LPPSLSNCVNLQVLDVGNNNL 278 (705)
Q Consensus 201 ~ls~n~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l 278 (705)
+++.+.+... .|+. ..-+.....++|++|++..|++..- .-..+..+++|+.|.+..|.+
T Consensus 277 nls~tgi~si~~~d~------------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDV------------------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hccccCcchhcCCCc------------------cchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 5555444321 1111 0001123456777888888777421 113445567777777777777
Q ss_pred CC
Q 005267 279 SG 280 (705)
Q Consensus 279 ~~ 280 (705)
+.
T Consensus 339 n~ 340 (505)
T KOG3207|consen 339 NK 340 (505)
T ss_pred cc
Confidence 63
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.04 E-value=2.6e-11 Score=116.84 Aligned_cols=132 Identities=21% Similarity=0.306 Sum_probs=67.3
Q ss_pred CCCcEEEcccCCCCCC----CcccccCCCCCcEEEcccCcCCccCCc-----ccCCCCCCEEEcCCCcCCcc----cchh
Q 005267 171 PHMVQLSISNNSLTGE----IPSSFCNLSSIQYLYLSNNSLSGQIPQ-----CLGNSTLENLDLGMNNFQGT----IPQT 237 (705)
Q Consensus 171 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~n~~~~~~~~-----~~~~~~L~~L~L~~n~l~~~----~~~~ 237 (705)
++|+++...+|++... +...|...+.|+.+.++.|.|....-. ...+++|+.|||.+|-++.. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 3444555555544321 122344445555555555544321110 11225555555555555422 2344
Q ss_pred ccCCCCCCEEECcCCcCcCCCCccC-----CCCCcCcEEEccCCcCCCC----CCccccCCCCCcEEEccCccc
Q 005267 238 YAKGCNLTYLRLSGNHLEGPLPPSL-----SNCVNLQVLDVGNNNLSGP----IPECLGNSTRLSFLDVRNNNL 302 (705)
Q Consensus 238 ~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 302 (705)
+..+++|+.|++++|.+...-...| ...++|++|.+.+|.++.. +..++...+.|+.|+|++|.+
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 5556666777777766654322221 2356777777777766522 222344567777777777777
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=8e-11 Score=110.69 Aligned_cols=132 Identities=26% Similarity=0.252 Sum_probs=83.8
Q ss_pred ccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCc
Q 005267 191 FCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQ 269 (705)
Q Consensus 191 ~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (705)
+...+.|+.+|+|+|.|+ .+.+.... +.++.|++++|.+... ..++.+++|+.|||++|.++ .+..+-..+.+.+
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 334556777777777776 45555555 7777777777776633 23666777777777777776 3444445666777
Q ss_pred EEEccCCcCCCCCCccccCCCCCcEEEccCccccCCC-CccccCCCCCCeEeccCccccc
Q 005267 270 VLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPI-PECLGNSTSLSFLDVGNNSLSG 328 (705)
Q Consensus 270 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~ 328 (705)
+|.|++|.+... ..++++-+|..||+++|+|.... -..++++|.|+++.+.+|.+.+
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 777777766522 34556666777777777765321 2346667777777777776653
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=5.6e-10 Score=101.29 Aligned_cols=80 Identities=34% Similarity=0.341 Sum_probs=14.1
Q ss_pred CCCEEeCCCCCCccccCccccc-CCCCCCEEEccCCCCcceecccCccCCCCCCEEecCCCCCCCCChhc-cCCCCCCEE
Q 005267 31 NLTFVSLSFNNFSGSVELYDFA-KLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDIL-KTQHQLDWL 108 (705)
Q Consensus 31 ~L~~L~Ls~n~l~~~i~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L 108 (705)
++++|+|.+|.|+ .|.. + + .+.+|+.|+|++|.|.....++ .+++|++|++++|.++.++..+ ..+++|++|
T Consensus 20 ~~~~L~L~~n~I~-~Ie~-L-~~~l~~L~~L~Ls~N~I~~l~~l~---~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIEN-L-GATLDKLEVLDLSNNQITKLEGLP---GLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -----------------S----TT-TT--EEE-TTS--S--TT-------TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccc-cccc-h-hhhhcCCCEEECCCCCCccccCcc---ChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 4445555555444 3321 1 2 3444445555544332222111 3344444444444444443322 234444444
Q ss_pred EccCCcCC
Q 005267 109 DLSENQIR 116 (705)
Q Consensus 109 ~Ls~n~~~ 116 (705)
++++|++.
T Consensus 94 ~L~~N~I~ 101 (175)
T PF14580_consen 94 YLSNNKIS 101 (175)
T ss_dssp E-TTS---
T ss_pred ECcCCcCC
Confidence 44444443
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=7.2e-10 Score=125.85 Aligned_cols=128 Identities=28% Similarity=0.367 Sum_probs=76.0
Q ss_pred CCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCc--CCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEE
Q 005267 195 SSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNN--FQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLD 272 (705)
Q Consensus 195 ~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (705)
...+...+-+|.+. .++....++.|++|-+..|. +.....+.|..++.|++|||++|.--+.+|..++.+-+|++|+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchh-hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 44555555555543 44444444566666666664 3433444456666666666666655556666666666666666
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCc
Q 005267 273 VGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNN 324 (705)
Q Consensus 273 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 324 (705)
+++..+. .+|..++++..|.+|++..+.-...+|.....+.+|++|.+..-
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 6666666 56666666666666666666554444555555666666666443
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.91 E-value=8.7e-10 Score=125.17 Aligned_cols=128 Identities=27% Similarity=0.279 Sum_probs=93.7
Q ss_pred CCCCEEECCCCCCCccCCccCcCCCCCCEEeCCCCC--CccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCC
Q 005267 6 TQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNN--FSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNL 82 (705)
Q Consensus 6 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L 82 (705)
...+...+-+|.+. .++.. .+.+.|++|-+..|. +. .++..+|..++.|++|||++| ...+.+|..+ .+.+|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~--~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGN--SSLSKLPSSIGELVHL 597 (889)
T ss_pred hheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCC--CccCcCChHHhhhhhh
Confidence 34556666666554 22222 234478888888886 44 677777888888888888888 7778888877 78888
Q ss_pred CEEecCCCCCCCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCC
Q 005267 83 WALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNF 140 (705)
Q Consensus 83 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~ 140 (705)
|+|+++++.+..+|..+.+++.|.+|++..+.....+|.....+ ++|++|.+....
T Consensus 598 ryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L--~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 598 RYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL--QSLRVLRLPRSA 653 (889)
T ss_pred hcccccCCCccccchHHHHHHhhheeccccccccccccchhhhc--ccccEEEeeccc
Confidence 88888888888888888888888888888776555555555556 888888876654
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.1e-09 Score=99.50 Aligned_cols=125 Identities=30% Similarity=0.315 Sum_probs=51.5
Q ss_pred CCCCCCEEECCCCCCCccCCccCc-CCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCC
Q 005267 4 NLTQLSSLNLADNQLIGSIPSSIF-ELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPN 81 (705)
Q Consensus 4 ~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~ 81 (705)
+..++++|+|.+|.|+.. +.++ .+.+|+.|+|++|.++ .++ .+..+++|++|++++|+|...+. ... .+++
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i~~--~l~~~lp~ 89 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSISE--GLDKNLPN 89 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-CH--HHHHH-TT
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCcccc--chHHhCCc
Confidence 445689999999999843 4465 5889999999999998 565 24889999999999997755432 111 5899
Q ss_pred CCEEecCCCCCCCCC--hhccCCCCCCEEEccCCcCCCCCc---hHHHhcCCCCccEEECC
Q 005267 82 LWALGLSACNISEFP--DILKTQHQLDWLDLSENQIRGRIP---SWMWDIGVHTLFRLDLS 137 (705)
Q Consensus 82 L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~~~~~~~---~~l~~l~~~~L~~L~ls 137 (705)
|++|++++|+|.++. ..+..+++|++|+|.+|.++..-- ..+..+ ++|+.||-.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l--P~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL--PSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH---TT-SEETTE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc--ChhheeCCE
Confidence 999999999996554 457889999999999999874311 224455 999998754
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=7.7e-10 Score=82.36 Aligned_cols=59 Identities=36% Similarity=0.563 Sum_probs=29.3
Q ss_pred cccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCc
Q 005267 503 TFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNK 561 (705)
Q Consensus 503 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 561 (705)
+|++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555554444445555555555555555554444445555555555555544
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=2.1e-10 Score=122.17 Aligned_cols=248 Identities=27% Similarity=0.296 Sum_probs=148.4
Q ss_pred CCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEE
Q 005267 193 NLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLD 272 (705)
Q Consensus 193 ~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (705)
.+..++.+.+..|.+.......-...+|+.|++.+|.+... ...+..+++|++|++++|.|+.. ..+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 34455555566665553122222236666666766666632 22256677777777777777754 2355666677778
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEccCccccCCCC-ccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccc
Q 005267 273 VGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP-ECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSG 351 (705)
Q Consensus 273 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 351 (705)
+++|.++.. ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+.. +...-....+..+++..|.++.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-IEGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-ccchHHHHHHHHhhccccccee
Confidence 888777632 345557777778888877775543 2 4667777777888777652 2222222244455667776653
Q ss_pred cccccccCCC--CccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCC
Q 005267 352 SLPQTFGKSC--VLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTK 429 (705)
Q Consensus 352 ~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 429 (705)
.-+ +.... .|+.+++++|.+.. .+..+..+..+..+++.+|++...-. +...+.+..+....|++........
T Consensus 223 ~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (414)
T KOG0531|consen 223 LEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQ 297 (414)
T ss_pred ccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhhhc
Confidence 322 11122 37888888888873 33556777888888888888765422 3445666666777776653321111
Q ss_pred C--CCCCCCccEEEccCCcCcccCC
Q 005267 430 T--RVPFPKLRIIDLSYNQFTGVLP 452 (705)
Q Consensus 430 ~--~~~~~~L~~L~ls~n~l~~~~p 452 (705)
. ....+.++.+.+..|......+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 298 EYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccccccccccccCccccccc
Confidence 1 2456777788888877765444
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.2e-09 Score=81.39 Aligned_cols=61 Identities=46% Similarity=0.623 Sum_probs=57.6
Q ss_pred CCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcc
Q 005267 526 NSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL 586 (705)
Q Consensus 526 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 586 (705)
++|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999988888999999999999999999988889999999999999999986
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.81 E-value=5.9e-10 Score=118.71 Aligned_cols=246 Identities=24% Similarity=0.266 Sum_probs=138.2
Q ss_pred CCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEE
Q 005267 264 NCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLD 343 (705)
Q Consensus 264 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 343 (705)
.+..++.+++..|.+.. +-..+..+++|+.+++.+|.|.... ..+..+++|++|++++|.++...
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~------------- 134 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE------------- 134 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc-------------
Confidence 44555666666666653 2233555666667777777666432 22455566666666666654221
Q ss_pred cCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcc-hhhhCCCCCCEEEccCCcCc
Q 005267 344 MRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP-HWLDVLPELQVLTLRSNRFC 422 (705)
Q Consensus 344 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 422 (705)
.+..++.|+.|++++|.++.. ..+..++.|+.+++++|++....+ . ...+.+++.+.+.+|.+.
T Consensus 135 ------------~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 135 ------------GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ------------chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 122333355555555555532 234446666666666666655443 2 355566666666666554
Q ss_pred CCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhc
Q 005267 423 GPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILT 502 (705)
Q Consensus 423 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 502 (705)
..... ..+..+..+++..|.++..-+... +.
T Consensus 200 ~i~~~----~~~~~l~~~~l~~n~i~~~~~l~~---------------------------------------------~~ 230 (414)
T KOG0531|consen 200 EIEGL----DLLKKLVLLSLLDNKISKLEGLNE---------------------------------------------LV 230 (414)
T ss_pred cccch----HHHHHHHHhhcccccceeccCccc---------------------------------------------ch
Confidence 32211 112233333555555442211000 11
Q ss_pred --cccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCC---cCccc-ccCCCCC
Q 005267 503 --TFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAG---RIPTQ-LASLNYL 576 (705)
Q Consensus 503 --~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~---~~p~~-l~~l~~L 576 (705)
+|+.+++++|.+.. ++..+..+..+..|++++|++... ..+...+.+..+....|.+.. ..... ....+.+
T Consensus 231 ~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (414)
T KOG0531|consen 231 MLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTL 307 (414)
T ss_pred hHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccc
Confidence 36778888888763 224566778888888888888754 445566777788888887662 22222 4566778
Q ss_pred CeEecccCcccccCC
Q 005267 577 SVLNLSNNQLEGPIP 591 (705)
Q Consensus 577 ~~L~ls~N~l~g~ip 591 (705)
....+.+|+.....+
T Consensus 308 ~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 308 VTLTLELNPIRKISS 322 (414)
T ss_pred cccccccCccccccc
Confidence 888888888777554
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=5.9e-09 Score=98.36 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=29.3
Q ss_pred cCCCCCcEEEcccCcC-Ccc-CCcccCCCCCCEEEcCCCcCCcccchh---ccCCCCCCEEECcCC
Q 005267 192 CNLSSIQYLYLSNNSL-SGQ-IPQCLGNSTLENLDLGMNNFQGTIPQT---YAKGCNLTYLRLSGN 252 (705)
Q Consensus 192 ~~l~~L~~L~ls~n~~-~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n 252 (705)
..+++|..||||+|.. +.. +-..+..+.|++|.++.|-. .+|+. +...+.|.+|++.++
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 3456666666665532 111 11112225566666665532 33432 345667777776654
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=9.8e-08 Score=90.27 Aligned_cols=103 Identities=22% Similarity=0.214 Sum_probs=53.2
Q ss_pred CCCEEEccCCCCcceecccCcc-CCCCCCEEecCCCCCCC---CChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCc
Q 005267 56 NLKYLILSNISLSVSTKLTVNS-SFPNLWALGLSACNISE---FPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTL 131 (705)
Q Consensus 56 ~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L 131 (705)
.++.|.+.++.|...|+..... .++.++++||.+|.+.. +...+.++|.|++|+|+.|.+...+-..- +...+|
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNL 123 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccce
Confidence 4445555555444444443333 56666777777776633 33445666777777777776653322211 122566
Q ss_pred cEEECCCCCCCCCCC----CCCCCCcEEEccCC
Q 005267 132 FRLDLSRNFLTSIDH----LPWKNLEFLTLDSN 160 (705)
Q Consensus 132 ~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n 160 (705)
++|.|.+..+.-... ..++.+++|.++.|
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 666666655433221 23444455555544
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.28 E-value=3e-08 Score=82.74 Aligned_cols=89 Identities=27% Similarity=0.388 Sum_probs=43.7
Q ss_pred ccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEec
Q 005267 502 TTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNL 581 (705)
Q Consensus 502 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 581 (705)
+..+.|+|++|+++ .+|.++..++.|+.|+++.|.+. ..|..+..+.+|-.||..+|.+. ++|..+---+.....++
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~l 153 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKL 153 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHh
Confidence 34455555555555 34444555666666666666655 34444444555555555555554 33332211112222334
Q ss_pred ccCcccccCCCC
Q 005267 582 SNNQLEGPIPGG 593 (705)
Q Consensus 582 s~N~l~g~ip~~ 593 (705)
.++++.+..|.+
T Consensus 154 gnepl~~~~~~k 165 (177)
T KOG4579|consen 154 GNEPLGDETKKK 165 (177)
T ss_pred cCCcccccCccc
Confidence 455555555443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=3.9e-08 Score=103.65 Aligned_cols=125 Identities=26% Similarity=0.287 Sum_probs=76.2
Q ss_pred CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCc-cccCCCCCcEEE
Q 005267 218 STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPE-CLGNSTRLSFLD 296 (705)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ 296 (705)
..|.+.+.+.|.+. ...+++.-++.|+.|+|++|+++.. +.+..|+.|++|||+.|.+.. +|. ....+. |+.|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhh-heeee
Confidence 45666666666665 4455666667777777777777643 356677777777777777763 332 222333 77777
Q ss_pred ccCccccCCCCccccCCCCCCeEeccCcccccc--cCcccccCcccEEEcCCCcc
Q 005267 297 VRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGP--IPEYLGNSTLEVLDMRMNKF 349 (705)
Q Consensus 297 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~L~~L~l~~n~l 349 (705)
+++|.++.. ..+.++.+|+.||+++|-+.+- +........|..|.|.+|.+
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 777776643 3566777777777777766532 11122223566666666665
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.2e-08 Score=94.59 Aligned_cols=174 Identities=25% Similarity=0.151 Sum_probs=94.2
Q ss_pred CCCEEecCCCCC--CCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCC-CCCCCC----CCCCCCc
Q 005267 81 NLWALGLSACNI--SEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNF-LTSIDH----LPWKNLE 153 (705)
Q Consensus 81 ~L~~L~L~~n~l--~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~-l~~~~~----~~~~~L~ 153 (705)
.|++|||+...+ .++-..+..|.+|+.|.|.++++.+.+...+.+- ..|+.++++.+. ++.... .+++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN--~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN--SNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc--ccceeeccccccccchhHHHHHHHhhhhHh
Confidence 355666665555 3333445555666666666666655555555544 555666655542 221111 3444455
Q ss_pred EEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCC--ccc--CCCCCCEEEcCCCc
Q 005267 154 FLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIP--QCL--GNSTLENLDLGMNN 229 (705)
Q Consensus 154 ~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~--~~~--~~~~L~~L~L~~n~ 229 (705)
.|++++|.+....-. ..-..+ -++|+.|+++++.-.-... +.+ ..++|.+|||++|.
T Consensus 264 ~LNlsWc~l~~~~Vt-----------------v~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVT-----------------VAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred hcCchHhhccchhhh-----------------HHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 555544443321100 000111 1356667777653211111 111 23889999999885
Q ss_pred -CCcccchhccCCCCCCEEECcCCcCcCCCCc---cCCCCCcCcEEEccCCc
Q 005267 230 -FQGTIPQTYAKGCNLTYLRLSGNHLEGPLPP---SLSNCVNLQVLDVGNNN 277 (705)
Q Consensus 230 -l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~ 277 (705)
++......|.+++.|++|.++.|.. .+|. .+...+.|.+|++.++-
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 3444445677888999999988864 3454 35677889999987763
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.20 E-value=4.8e-08 Score=103.00 Aligned_cols=104 Identities=23% Similarity=0.247 Sum_probs=53.9
Q ss_pred cccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEcc
Q 005267 338 TLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLR 417 (705)
Q Consensus 338 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 417 (705)
.|...+.++|.+. ....++.-++.++.|+|++|+++.. ..+..|+.|++|||+.|.+....--...++. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 3444455555554 3334444455556666666665532 2455566666666666665443332333333 6666666
Q ss_pred CCcCcCCCCCCCCCCCCCCccEEEccCCcCcc
Q 005267 418 SNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTG 449 (705)
Q Consensus 418 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 449 (705)
+|.++..... .++.+|+.||+++|-+.+
T Consensus 241 nN~l~tL~gi----e~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 241 NNALTTLRGI----ENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred ccHHHhhhhH----HhhhhhhccchhHhhhhc
Confidence 6655432211 345566666666665553
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=5.2e-07 Score=85.49 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=53.3
Q ss_pred CCccEEEccCCcCCCCC-CccccCCCCCcEEEccCCcCCCCcc-hhhhCCCCCCEEEccCCcCcCCCCCC----CCCCCC
Q 005267 361 CVLVSLKLNGNRLEGPL-PPSLVNCRHLEVIDVGNNQINETFP-HWLDVLPELQVLTLRSNRFCGPIGDT----KTRVPF 434 (705)
Q Consensus 361 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~~~ 434 (705)
+++..+.+..|.+...- ...+..++.+..|+|+.|+|..... +.+.+++.|..|.++++++.+..... .....+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL 278 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL 278 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence 45666666777665322 2345566777788888888865432 45778899999999999887654432 122456
Q ss_pred CCccEEEcc
Q 005267 435 PKLRIIDLS 443 (705)
Q Consensus 435 ~~L~~L~ls 443 (705)
++++.|+=+
T Consensus 279 ~~v~vLNGs 287 (418)
T KOG2982|consen 279 TKVQVLNGS 287 (418)
T ss_pred cceEEecCc
Confidence 677776543
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.13 E-value=3.8e-06 Score=75.47 Aligned_cols=104 Identities=27% Similarity=0.237 Sum_probs=71.3
Q ss_pred CCCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCccCCCCCCEEe
Q 005267 7 QLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALG 86 (705)
Q Consensus 7 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 86 (705)
....+||++|++... ..|..++.|.+|.|.+|+|+ .|.+.+-..+++|+.|.|.+|+|...+++.....|++|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 455677777776522 44666777778888888877 666665455677888888887777777776666777788887
Q ss_pred cCCCCCCCCC----hhccCCCCCCEEEccCC
Q 005267 87 LSACNISEFP----DILKTQHQLDWLDLSEN 113 (705)
Q Consensus 87 L~~n~l~~lp----~~l~~l~~L~~L~Ls~n 113 (705)
+-+|.+..-+ -.+..+|+|++||...-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777764433 24566777777777653
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=6.8e-07 Score=83.62 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=21.1
Q ss_pred CCCCCCEEeCCCCCCccccCcc---cccCCCCCCEEEccC
Q 005267 28 ELVNLTFVSLSFNNFSGSVELY---DFAKLKNLKYLILSN 64 (705)
Q Consensus 28 ~l~~L~~L~Ls~n~l~~~i~~~---~~~~l~~L~~L~L~~ 64 (705)
.+..++.++||+|.|...-... .+.+-.+|+..++++
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 3566777777777775322111 124456666666665
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.01 E-value=2.7e-06 Score=79.69 Aligned_cols=207 Identities=17% Similarity=0.173 Sum_probs=113.6
Q ss_pred CCCCCCEEECCCCCCCcc----CCccCcCCCCCCEEeCCCCCCccc----cCc------ccccCCCCCCEEEccCCCCcc
Q 005267 4 NLTQLSSLNLADNQLIGS----IPSSIFELVNLTFVSLSFNNFSGS----VEL------YDFAKLKNLKYLILSNISLSV 69 (705)
Q Consensus 4 ~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----i~~------~~~~~l~~L~~L~L~~n~~~~ 69 (705)
.+..++.+|||+|.|... +...+.+-.+|+..++|.-. +|. ++. .++.+|++|+..+||+| .+
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN--Af 104 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN--AF 104 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccc--cc
Confidence 366789999999998743 34556667889999998652 322 221 12367788888888888 33
Q ss_pred eecccCc----c-CCCCCCEEecCCCCCCCCCh-----h---------ccCCCCCCEEEccCCcCCCCCchHHHhcCCCC
Q 005267 70 STKLTVN----S-SFPNLWALGLSACNISEFPD-----I---------LKTQHQLDWLDLSENQIRGRIPSWMWDIGVHT 130 (705)
Q Consensus 70 ~~~~~~~----~-~l~~L~~L~L~~n~l~~lp~-----~---------l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~ 130 (705)
....+.. + .-+.|++|.+++|.++.+.. + ...-|.|++.+...|++. ..+...+...+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l-- 181 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALL-- 181 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHH--
Confidence 3333321 1 45667777777776644331 1 123345555555555544 22222221100
Q ss_pred ccEEECCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCC--------CCCCCcEEEcccCCCCCC----CcccccCCCCCc
Q 005267 131 LFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPN--------LPPHMVQLSISNNSLTGE----IPSSFCNLSSIQ 198 (705)
Q Consensus 131 L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~--------~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~ 198 (705)
..-.+|+++.+..|.|....-. ...+|+.||++.|.++.. ....++..+.|+
T Consensus 182 ----------------~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 182 ----------------ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred ----------------HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 0113455555555444321100 045666677776666532 233455566778
Q ss_pred EEEcccCcCCccCCccc-------CCCCCCEEEcCCCcCCc
Q 005267 199 YLYLSNNSLSGQIPQCL-------GNSTLENLDLGMNNFQG 232 (705)
Q Consensus 199 ~L~ls~n~~~~~~~~~~-------~~~~L~~L~L~~n~l~~ 232 (705)
.|.+..|-++......+ ..++|..|...+|.+.+
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 88887776654333221 22777888777776654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=7.9e-06 Score=55.41 Aligned_cols=36 Identities=42% Similarity=0.756 Sum_probs=15.1
Q ss_pred CCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCC
Q 005267 527 SLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 563 (705)
Q Consensus 527 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 563 (705)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444444
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=7.3e-05 Score=76.63 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=27.3
Q ss_pred CCCCCEEecCCCCCCCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCC
Q 005267 79 FPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRN 139 (705)
Q Consensus 79 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n 139 (705)
+.++++|++++|.+..+|. + -++|++|++++|.--..+|..+. ++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP----~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP----EGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh----hhhhheEccCc
Confidence 4556666666665555552 1 12466666665432224443331 45555666555
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.85 E-value=4.4e-07 Score=75.94 Aligned_cols=56 Identities=27% Similarity=0.411 Sum_probs=21.5
Q ss_pred CCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCc
Q 005267 243 NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNN 300 (705)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 300 (705)
..+.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+..+|
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence 3344444444443 23333444444444444444433 22333333333333333333
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=2.9e-05 Score=52.61 Aligned_cols=37 Identities=38% Similarity=0.476 Sum_probs=27.9
Q ss_pred CCCCEEecCCCCCCCCChhccCCCCCCEEEccCCcCC
Q 005267 80 PNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIR 116 (705)
Q Consensus 80 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~ 116 (705)
++|++|++++|.++++|..+.++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4677888888888888777888888888888888776
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=9.8e-05 Score=75.72 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=49.4
Q ss_pred ccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCC
Q 005267 357 FGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPK 436 (705)
Q Consensus 357 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 436 (705)
+..+.+++.|++++|.++ .+|. -..+|+.|.+++|.--...|..+ .++|+.|.+++|.....+ .++
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL--------P~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL--------PES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc--------ccc
Confidence 445678889999998877 3442 23468889988865545555544 357888888887322222 245
Q ss_pred ccEEEccCCcC
Q 005267 437 LRIIDLSYNQF 447 (705)
Q Consensus 437 L~~L~ls~n~l 447 (705)
|+.|+++.+..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 77777765543
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.65 E-value=1.7e-06 Score=86.07 Aligned_cols=108 Identities=20% Similarity=0.170 Sum_probs=50.2
Q ss_pred CCCCEEEcCCCc-CCcccchhcc-CCCCCCEEECcCCcCcC--CCCccCCCCCcCcEEEccCCcCCCCC-----CccccC
Q 005267 218 STLENLDLGMNN-FQGTIPQTYA-KGCNLTYLRLSGNHLEG--PLPPSLSNCVNLQVLDVGNNNLSGPI-----PECLGN 288 (705)
Q Consensus 218 ~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~ 288 (705)
.+|+.|.++.|+ ++..--..++ +.+.|+.+++..+.... .+...-.+++.|+.+.+++|...... ...-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 455555555553 2211111121 34455555555543321 11112235566666666666432111 111223
Q ss_pred CCCCcEEEccCccccCC-CCccccCCCCCCeEeccCcc
Q 005267 289 STRLSFLDVRNNNLSGP-IPECLGNSTSLSFLDVGNNS 325 (705)
Q Consensus 289 l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~ 325 (705)
+..|+.+.++++..... .-..+..+++|+.+++-+++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 45566677776664322 22345566677777666654
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=3.6e-05 Score=85.87 Aligned_cols=128 Identities=21% Similarity=0.242 Sum_probs=68.3
Q ss_pred CCCCEEEccCCCCcceecccCcc--CCCCCCEEecCCCCC--CCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCC
Q 005267 55 KNLKYLILSNISLSVSTKLTVNS--SFPNLWALGLSACNI--SEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHT 130 (705)
Q Consensus 55 ~~L~~L~L~~n~~~~~~~~~~~~--~l~~L~~L~L~~n~l--~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~ 130 (705)
.+|++|++++.. .+...++... .+|+|+.|.+++-.+ .++-....++|+|..||+|++.++.. ..+..+ ++
T Consensus 122 ~nL~~LdI~G~~-~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L--kn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSE-LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRL--KN 196 (699)
T ss_pred HhhhhcCccccc-hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcc--cc
Confidence 456666666542 1233333322 566666666666544 33334445566666666666665532 344444 56
Q ss_pred ccEEECCCCCCCCCCC----CCCCCCcEEEccCCcCCCCC---------CCCCCCCcEEEcccCCCCCCC
Q 005267 131 LFRLDLSRNFLTSIDH----LPWKNLEFLTLDSNLLQGSL---------PNLPPHMVQLSISNNSLTGEI 187 (705)
Q Consensus 131 L~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~~~~---------~~~~~~L~~L~l~~n~l~~~~ 187 (705)
|+.|.+.+=.+..... ..+++|+.||+|........ ...+|+|+.||.|++.+....
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 6666555544443221 45666666666654433211 122678888888877776543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.59 E-value=0.00017 Score=65.10 Aligned_cols=79 Identities=24% Similarity=0.254 Sum_probs=39.0
Q ss_pred CCCEEecCCCCCCCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC----CCCCCCcEEE
Q 005267 81 NLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH----LPWKNLEFLT 156 (705)
Q Consensus 81 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~ 156 (705)
....+||++|.+..++. |..+++|..|.|++|+|+..-|.--..+ +.|..|.+.+|.+..... ..|+.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~--p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFL--PNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhc--cccceEEecCcchhhhhhcchhccCCccceee
Confidence 34445555555543332 4455666666666666664333322222 556666666665543322 3444555555
Q ss_pred ccCCcC
Q 005267 157 LDSNLL 162 (705)
Q Consensus 157 l~~n~~ 162 (705)
+-+|..
T Consensus 120 ll~Npv 125 (233)
T KOG1644|consen 120 LLGNPV 125 (233)
T ss_pred ecCCch
Confidence 444443
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.58 E-value=2.4e-06 Score=84.97 Aligned_cols=286 Identities=20% Similarity=0.127 Sum_probs=154.3
Q ss_pred CCCEEeCCCCCCccccCcc-cccCCCCCCEEEccCCCCcceecccCcc---CCCCCCEEecCCCCC-CCC--ChhccCCC
Q 005267 31 NLTFVSLSFNNFSGSVELY-DFAKLKNLKYLILSNISLSVSTKLTVNS---SFPNLWALGLSACNI-SEF--PDILKTQH 103 (705)
Q Consensus 31 ~L~~L~Ls~n~l~~~i~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~---~l~~L~~L~L~~n~l-~~l--p~~l~~l~ 103 (705)
.|+.|.+.++.=.+.-+.. +-.+++++++|.+.++ ..+.+..... .+++|++|++..|.. +.. ......|+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc--~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGC--KKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcc--eeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 4677777766533222222 2256677777777776 3332222111 677777777777543 221 12334677
Q ss_pred CCCEEEccCCc-CCCCC-chHHHhcCCCCccEEECCCCCCCCCCC-----CCCCCCcEEEccCCc-CCCC----CCCCCC
Q 005267 104 QLDWLDLSENQ-IRGRI-PSWMWDIGVHTLFRLDLSRNFLTSIDH-----LPWKNLEFLTLDSNL-LQGS----LPNLPP 171 (705)
Q Consensus 104 ~L~~L~Ls~n~-~~~~~-~~~l~~l~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~l~~n~-~~~~----~~~~~~ 171 (705)
+|++|+++++. +++.- ..... ++..++.+.+++|.=.+... ..+..+..+++..+. ++.. +.....
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~r--G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQR--GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhc--cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 77777777763 33211 11111 22445555555442221111 223344455544442 2211 111256
Q ss_pred CCcEEEcccCCCCCC-C-cccccCCCCCcEEEcccCcC-CccCCcccCC--CCCCEEEcCCCcCCc--ccchhccCCCCC
Q 005267 172 HMVQLSISNNSLTGE-I-PSSFCNLSSIQYLYLSNNSL-SGQIPQCLGN--STLENLDLGMNNFQG--TIPQTYAKGCNL 244 (705)
Q Consensus 172 ~L~~L~l~~n~l~~~-~-~~~~~~l~~L~~L~ls~n~~-~~~~~~~~~~--~~L~~L~L~~n~l~~--~~~~~~~~l~~L 244 (705)
.|+.|+.+++.-.+. . ..--.+..+|+.|.++.++- +..-...++- +.|+.+++..+.... .+...-.+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 677787777654322 1 12234678899999988863 2222222222 789999998886532 122333467889
Q ss_pred CEEECcCCcCcCCC-----CccCCCCCcCcEEEccCCcCC-CCCCccccCCCCCcEEEccCccccCC--CCccccCCCCC
Q 005267 245 TYLRLSGNHLEGPL-----PPSLSNCVNLQVLDVGNNNLS-GPIPECLGNSTRLSFLDVRNNNLSGP--IPECLGNSTSL 316 (705)
Q Consensus 245 ~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L 316 (705)
+.+.++++...... ...-..+..|..+.++++... +..-+.+..+++|+.+++.+++-... +...-.+++++
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i 454 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNI 454 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccc
Confidence 99999987653221 223345778999999998754 33344567788999999988764322 22223456666
Q ss_pred CeEe
Q 005267 317 SFLD 320 (705)
Q Consensus 317 ~~L~ 320 (705)
++..
T Consensus 455 ~v~a 458 (483)
T KOG4341|consen 455 KVHA 458 (483)
T ss_pred eehh
Confidence 5544
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.58 E-value=3.7e-05 Score=72.42 Aligned_cols=113 Identities=30% Similarity=0.284 Sum_probs=76.0
Q ss_pred ccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCEEecCCCCCCCCC--
Q 005267 20 GSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALGLSACNISEFP-- 96 (705)
Q Consensus 20 ~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~lp-- 96 (705)
+.+......+..|+.|.+.+..++ +..-|-.|++|+.|.++.|+....+.++... .+++|+++++++|++..+.
T Consensus 33 g~~~gl~d~~~~le~ls~~n~glt---t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLT---TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred CCcccccccccchhhhhhhcccee---ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence 345555666778888888888776 2223467889999999998665566665555 7799999999999885432
Q ss_pred hhccCCCCCCEEEccCCcCCCCCc---hHHHhcCCCCccEEECC
Q 005267 97 DILKTQHQLDWLDLSENQIRGRIP---SWMWDIGVHTLFRLDLS 137 (705)
Q Consensus 97 ~~l~~l~~L~~L~Ls~n~~~~~~~---~~l~~l~~~~L~~L~ls 137 (705)
.-+..+.+|..|++.+|..++.-- ..+.-+ ++|+.|+-.
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll--~~L~~LD~~ 151 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLL--PSLKYLDGC 151 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHh--hhhcccccc
Confidence 235667788899999887765211 122223 666666543
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=4.3e-05 Score=85.22 Aligned_cols=137 Identities=20% Similarity=0.155 Sum_probs=91.8
Q ss_pred CCCCEEECCCCCCC-ccCCccCc-CCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCccCCCCCC
Q 005267 6 TQLSSLNLADNQLI-GSIPSSIF-ELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLW 83 (705)
Q Consensus 6 ~~L~~L~Ls~n~~~-~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 83 (705)
.+|++||+++...- ...|..++ .+|+|++|.+++-.+...--..++.++++|+.||+|+.++... .....+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 46889999886543 22333444 5899999999987765322234458899999999999755433 2222788999
Q ss_pred EEecCCCCCCCCC--hhccCCCCCCEEEccCCcCCCCC--chHHH--hcCCCCccEEECCCCCCCCCC
Q 005267 84 ALGLSACNISEFP--DILKTQHQLDWLDLSENQIRGRI--PSWMW--DIGVHTLFRLDLSRNFLTSID 145 (705)
Q Consensus 84 ~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~~~~~~--~~~l~--~l~~~~L~~L~ls~n~l~~~~ 145 (705)
.|.+.+-.+..-. ..+..+++|++||+|........ ...+- ...++.|+.||.|+..+....
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 9988887774433 35678999999999977654321 11111 113489999999988776543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.28 E-value=0.00076 Score=58.90 Aligned_cols=85 Identities=21% Similarity=0.319 Sum_probs=34.9
Q ss_pred hhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCC
Q 005267 236 QTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTS 315 (705)
Q Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 315 (705)
..|.++.+|+.+.+.. .+.......|..+++|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455555566665553 343344445555555666665543 4333334455555555555543 222233344455555
Q ss_pred CCeEeccC
Q 005267 316 LSFLDVGN 323 (705)
Q Consensus 316 L~~L~l~~ 323 (705)
|+.+++..
T Consensus 83 l~~i~~~~ 90 (129)
T PF13306_consen 83 LKNIDIPS 90 (129)
T ss_dssp ECEEEETT
T ss_pred ccccccCc
Confidence 55555543
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.19 E-value=0.001 Score=58.07 Aligned_cols=122 Identities=18% Similarity=0.322 Sum_probs=53.5
Q ss_pred ccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCc
Q 005267 189 SSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVN 267 (705)
Q Consensus 189 ~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (705)
..|.++++|+.+.+.. .+.......+.. ++|+.+.+..+ +.......|..+++++.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4566666777777664 344333444444 46666666654 5444555666666677777755 333233455666777
Q ss_pred CcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCC
Q 005267 268 LQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSL 316 (705)
Q Consensus 268 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 316 (705)
|+.+++..+ +.......|.++ +++.+.+.. .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 777777554 443444456665 667666654 3333444556665554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.00067 Score=64.16 Aligned_cols=87 Identities=26% Similarity=0.361 Sum_probs=57.5
Q ss_pred cCCCCCCEEEccCCCCcceecccCccCCCCCCEEecCCC--CC-CCCChhccCCCCCCEEEccCCcCCCCCchH---HHh
Q 005267 52 AKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSAC--NI-SEFPDILKTQHQLDWLDLSENQIRGRIPSW---MWD 125 (705)
Q Consensus 52 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n--~l-~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~---l~~ 125 (705)
..+..|+.|++.+..++.....| .+++|++|.++.| ++ ..++.....+++|++|++++|++.. +.. +..
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P---~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~ 114 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFP---KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE 114 (260)
T ss_pred ccccchhhhhhhccceeecccCC---CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence 55667777777766443333333 5788888888888 44 5555555666888888888888763 222 333
Q ss_pred cCCCCccEEECCCCCCCCCC
Q 005267 126 IGVHTLFRLDLSRNFLTSID 145 (705)
Q Consensus 126 l~~~~L~~L~ls~n~l~~~~ 145 (705)
+ ++|..|++.+|..+...
T Consensus 115 l--~nL~~Ldl~n~~~~~l~ 132 (260)
T KOG2739|consen 115 L--ENLKSLDLFNCSVTNLD 132 (260)
T ss_pred h--cchhhhhcccCCccccc
Confidence 4 66778888888766643
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=8.2e-05 Score=70.31 Aligned_cols=100 Identities=25% Similarity=0.225 Sum_probs=55.1
Q ss_pred CCCCCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCccCCCCCCE
Q 005267 5 LTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWA 84 (705)
Q Consensus 5 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 84 (705)
+.+++.|+.-++.+..+ ....+++.|++|.||-|+|+.--| |..|++|+.|+|..|.|....++.-..++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 44566666666666533 334566677777777777662222 3566777777777665544444433336666666
Q ss_pred EecCCCCC-CCCC-----hhccCCCCCCEEE
Q 005267 85 LGLSACNI-SEFP-----DILKTQHQLDWLD 109 (705)
Q Consensus 85 L~L~~n~l-~~lp-----~~l~~l~~L~~L~ 109 (705)
|-|..|.- ++-+ ..+..+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66666543 2221 2344455555554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.00029 Score=66.68 Aligned_cols=99 Identities=24% Similarity=0.347 Sum_probs=58.3
Q ss_pred ccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcc-hhhhCCCCCCEEEcc
Q 005267 339 LEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFP-HWLDVLPELQVLTLR 417 (705)
Q Consensus 339 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~ 417 (705)
.+.|+..+|.++++ .....++.|+.|.|+-|+|+.. ..+..|+.|++|+|..|.|.+... ..+.++|+|++|.|.
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 44455555554432 2234556667777777776644 236677777777777777755432 345677777888777
Q ss_pred CCcCcCCCCCCC---CCCCCCCccEEE
Q 005267 418 SNRFCGPIGDTK---TRVPFPKLRIID 441 (705)
Q Consensus 418 ~n~l~~~~~~~~---~~~~~~~L~~L~ 441 (705)
.|+-.|.-+... ....+|+|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 777665544322 112356666665
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.47 E-value=0.0055 Score=34.40 Aligned_cols=12 Identities=58% Similarity=0.755 Sum_probs=5.2
Q ss_pred CCEEecCCCcCC
Q 005267 528 LKSLNISHNNLT 539 (705)
Q Consensus 528 L~~L~Ls~N~l~ 539 (705)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.31 E-value=0.0014 Score=71.81 Aligned_cols=170 Identities=23% Similarity=0.080 Sum_probs=76.8
Q ss_pred CCCCCEEeCCCCCCccccC-cccccCCCCCCEEEccCC--CCcceec--ccCccCCCCCCEEecCCCC-CCCCC--hhcc
Q 005267 29 LVNLTFVSLSFNNFSGSVE-LYDFAKLKNLKYLILSNI--SLSVSTK--LTVNSSFPNLWALGLSACN-ISEFP--DILK 100 (705)
Q Consensus 29 l~~L~~L~Ls~n~l~~~i~-~~~~~~l~~L~~L~L~~n--~~~~~~~--~~~~~~l~~L~~L~L~~n~-l~~lp--~~l~ 100 (705)
++.|+.|.+..+.-..... ..+...+++|+.|+++++ .+...+. ......+++|+.|+++++. +++.- ....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5666666666553221211 122355666666666652 0011110 1111145666667766666 32221 1122
Q ss_pred CCCCCCEEEccCCc-CCCCCchHHHhcCCCCccEEECCCCCCCCCCC-----CCCCCCcEEEccCCcCCCCCCCCCCCCc
Q 005267 101 TQHQLDWLDLSENQ-IRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH-----LPWKNLEFLTLDSNLLQGSLPNLPPHMV 174 (705)
Q Consensus 101 ~l~~L~~L~Ls~n~-~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~l~~n~~~~~~~~~~~~L~ 174 (705)
.|++|+.|.+.++. +++.--..+.. .++.|++|+++++....... ..+++++.|.+....- ...++
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~-~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-------c~~l~ 338 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAE-RCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-------CPSLT 338 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHH-hcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-------CccHH
Confidence 36667777666555 34322222222 23567777776665432111 2355555544322211 23344
Q ss_pred EEEcccCCCC---CCCcccccCCCCCcEEEcccCc
Q 005267 175 QLSISNNSLT---GEIPSSFCNLSSIQYLYLSNNS 206 (705)
Q Consensus 175 ~L~l~~n~l~---~~~~~~~~~l~~L~~L~ls~n~ 206 (705)
.+.+....-. ......+..+++++.+.+..+.
T Consensus 339 ~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 339 DLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred HHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 4444333221 1222335567777777777665
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.22 E-value=0.0054 Score=34.42 Aligned_cols=21 Identities=48% Similarity=0.765 Sum_probs=12.6
Q ss_pred CCCeeeCCCCcCCCcCcccccC
Q 005267 551 ELESLDLSSNKLAGRIPTQLAS 572 (705)
Q Consensus 551 ~L~~L~Ls~N~l~~~~p~~l~~ 572 (705)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666766666 55555543
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.23 E-value=0.0096 Score=65.29 Aligned_cols=109 Identities=25% Similarity=0.179 Sum_probs=52.3
Q ss_pred CCCCEEEcCCCcCCcc--cchhccCCCCCCEEECcCC-cCcCCCC----ccCCCCCcCcEEEccCCc-CCCCCCccccC-
Q 005267 218 STLENLDLGMNNFQGT--IPQTYAKGCNLTYLRLSGN-HLEGPLP----PSLSNCVNLQVLDVGNNN-LSGPIPECLGN- 288 (705)
Q Consensus 218 ~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~- 288 (705)
+.|+.+.+..+.-... .-.....++.|+.|+++++ ......+ .....+++|+.|+++.+. +++..-..++.
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 5666666666633222 2334455666777777652 1111111 122345666666666665 44332222222
Q ss_pred CCCCcEEEccCcc-ccCCC-CccccCCCCCCeEeccCccc
Q 005267 289 STRLSFLDVRNNN-LSGPI-PECLGNSTSLSFLDVGNNSL 326 (705)
Q Consensus 289 l~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~l 326 (705)
+++|++|.+.++. +++.. ......++.|++|+++++..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 5566666655554 33221 12233455566666665543
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.60 E-value=0.069 Score=27.71 Aligned_cols=9 Identities=33% Similarity=0.280 Sum_probs=3.0
Q ss_pred CEEecCCCC
Q 005267 83 WALGLSACN 91 (705)
Q Consensus 83 ~~L~L~~n~ 91 (705)
++|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.34 E-value=0.09 Score=27.27 Aligned_cols=13 Identities=46% Similarity=0.823 Sum_probs=4.5
Q ss_pred CCCEEecCCCcCC
Q 005267 527 SLKSLNISHNNLT 539 (705)
Q Consensus 527 ~L~~L~Ls~N~l~ 539 (705)
+|++|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.79 E-value=0.0019 Score=69.16 Aligned_cols=61 Identities=31% Similarity=0.397 Sum_probs=35.4
Q ss_pred ccEEEccCCcccccc----chhhhcC-CCCCEEecCCCcCCccCC----ccccCCCCCCeeeCCCCcCCC
Q 005267 504 FATIDLSSNRFQGEI----SEVLGKL-NSLKSLNISHNNLTGGIP----SSLRNLTELESLDLSSNKLAG 564 (705)
Q Consensus 504 L~~L~Ls~n~l~~~~----~~~l~~l-~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~ 564 (705)
+.++++++|++.+.. ...+..+ ..+++++++.|.|++... ..+...++++.|.+++|.+..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 444677777665431 2223334 456777777777765433 334455677777777777653
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.61 E-value=0.16 Score=29.74 Aligned_cols=23 Identities=39% Similarity=0.345 Sum_probs=15.1
Q ss_pred CCCCCEEeCCCCCCccccCccccc
Q 005267 29 LVNLTFVSLSFNNFSGSVELYDFA 52 (705)
Q Consensus 29 l~~L~~L~Ls~n~l~~~i~~~~~~ 52 (705)
+++|++|+|++|.++ .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356677777777776 66666653
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.61 E-value=0.16 Score=29.74 Aligned_cols=23 Identities=39% Similarity=0.345 Sum_probs=15.1
Q ss_pred CCCCCEEeCCCCCCccccCccccc
Q 005267 29 LVNLTFVSLSFNNFSGSVELYDFA 52 (705)
Q Consensus 29 l~~L~~L~Ls~n~l~~~i~~~~~~ 52 (705)
+++|++|+|++|.++ .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356677777777776 66666653
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.03 E-value=0.0013 Score=70.45 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=15.8
Q ss_pred cCcEEEccCCcCCCC----CCccccCCCCCcEEEccCccc
Q 005267 267 NLQVLDVGNNNLSGP----IPECLGNSTRLSFLDVRNNNL 302 (705)
Q Consensus 267 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 302 (705)
.+++|++..|.++.. +...+.....++.++++.|.+
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 344444444444322 222333344555555555544
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.15 E-value=0.24 Score=28.94 Aligned_cols=15 Identities=47% Similarity=0.716 Sum_probs=8.2
Q ss_pred CCCCeeeCCCCcCCC
Q 005267 550 TELESLDLSSNKLAG 564 (705)
Q Consensus 550 ~~L~~L~Ls~N~l~~ 564 (705)
++|+.|+|++|++..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455555555555553
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.15 E-value=0.24 Score=28.94 Aligned_cols=15 Identities=47% Similarity=0.716 Sum_probs=8.2
Q ss_pred CCCCeeeCCCCcCCC
Q 005267 550 TELESLDLSSNKLAG 564 (705)
Q Consensus 550 ~~L~~L~Ls~N~l~~ 564 (705)
++|+.|+|++|++..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455555555555553
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.87 E-value=0.013 Score=54.36 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=67.4
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEe
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 580 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 580 (705)
....+.||++.|++... -..|+-++.|..|+++.|.+. ..|..++.+..+..+++..|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 45677889998887633 344666778888899999888 77888888888888898888887 7788888889999988
Q ss_pred cccCccc
Q 005267 581 LSNNQLE 587 (705)
Q Consensus 581 ls~N~l~ 587 (705)
+-+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8888764
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.97 E-value=0.11 Score=47.51 Aligned_cols=82 Identities=26% Similarity=0.221 Sum_probs=59.4
Q ss_pred cccEEEccCCccccccchhhhcCCCCCEEecCCCcCCc-cCCcccc-CCCCCCeeeCCCC-cCCCcCcccccCCCCCCeE
Q 005267 503 TFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTG-GIPSSLR-NLTELESLDLSSN-KLAGRIPTQLASLNYLSVL 579 (705)
Q Consensus 503 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~-~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L 579 (705)
.++.+|-++..|..+.-+-+.+++.++.|.+.+|.--+ .--+-++ -.++|+.|+|++| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46788999999888877888889999999998886221 1001111 3478999999988 6776656677788888888
Q ss_pred ecccC
Q 005267 580 NLSNN 584 (705)
Q Consensus 580 ~ls~N 584 (705)
.+.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77653
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.64 E-value=0.41 Score=27.33 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=7.1
Q ss_pred cccEEEccCCcccccc
Q 005267 503 TFATIDLSSNRFQGEI 518 (705)
Q Consensus 503 ~L~~L~Ls~n~l~~~~ 518 (705)
+|++|+|++|++++..
T Consensus 3 ~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 3 NLETLDLSNNQITDEG 18 (24)
T ss_dssp T-SEEE-TSSBEHHHH
T ss_pred CCCEEEccCCcCCHHH
Confidence 4455555555554433
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.34 E-value=0.019 Score=53.35 Aligned_cols=89 Identities=20% Similarity=0.149 Sum_probs=61.8
Q ss_pred hhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCC
Q 005267 236 QTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTS 315 (705)
Q Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 315 (705)
..+......+.||++.|++. ..-..|.-++.+..|+++.|.+. ..|..++....+..+++..|..+ ..|.++...+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34455566777777777765 33445666677777788777776 56777777777777777777766 55777777777
Q ss_pred CCeEeccCcccc
Q 005267 316 LSFLDVGNNSLS 327 (705)
Q Consensus 316 L~~L~l~~n~l~ 327 (705)
++.+++..|.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 777777777654
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.13 E-value=2.3 Score=24.90 Aligned_cols=14 Identities=64% Similarity=0.850 Sum_probs=8.9
Q ss_pred CCCCeeeCCCCcCC
Q 005267 550 TELESLDLSSNKLA 563 (705)
Q Consensus 550 ~~L~~L~Ls~N~l~ 563 (705)
++|+.|++++|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.54 E-value=0.97 Score=41.57 Aligned_cols=77 Identities=18% Similarity=0.104 Sum_probs=32.8
Q ss_pred CcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccc
Q 005267 387 LEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMM 463 (705)
Q Consensus 387 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~ 463 (705)
++.+|-++..|..+.-..+..+++++.|.+.+|.-.+...-.......++|+.|++++|.-...-...++..++++.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 34444444444433334444445555555554443222211111123456666666666433333333334444443
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.07 E-value=13 Score=39.03 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=11.8
Q ss_pred CCCcEEEcccCcCCccCCccc
Q 005267 195 SSIQYLYLSNNSLSGQIPQCL 215 (705)
Q Consensus 195 ~~L~~L~ls~n~~~~~~~~~~ 215 (705)
+.+++++++.|.+....|-.+
T Consensus 165 pr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred chhhhhccCCCcccccCCccc
Confidence 455666666666655544443
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=71.44 E-value=17 Score=38.17 Aligned_cols=33 Identities=33% Similarity=0.346 Sum_probs=16.5
Q ss_pred CCcEEEccCccccCCCCcc--ccCCCCCCeEeccC
Q 005267 291 RLSFLDVRNNNLSGPIPEC--LGNSTSLSFLDVGN 323 (705)
Q Consensus 291 ~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~ 323 (705)
.+++|...+|...+..... ...-++.+.+++..
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccc
Confidence 3666666666665543322 23334455555443
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.69 E-value=3.1 Score=44.32 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=16.0
Q ss_pred CCCCCCEEecCCCCCCCC---ChhccCCCCCCEEEccCC
Q 005267 78 SFPNLWALGLSACNISEF---PDILKTQHQLDWLDLSEN 113 (705)
Q Consensus 78 ~l~~L~~L~L~~n~l~~l---p~~l~~l~~L~~L~Ls~n 113 (705)
+.+.+..++|++|++..+ ...-...|+|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344555555555554222 222233445555555554
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.09 E-value=4.7 Score=23.55 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=11.0
Q ss_pred CCCEEecCCCCCCCCCh
Q 005267 81 NLWALGLSACNISEFPD 97 (705)
Q Consensus 81 ~L~~L~L~~n~l~~lp~ 97 (705)
+|++|++++|++.++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56666666666666664
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.04 E-value=6 Score=23.55 Aligned_cols=13 Identities=46% Similarity=0.744 Sum_probs=7.8
Q ss_pred CCCEEecCCCcCC
Q 005267 527 SLKSLNISHNNLT 539 (705)
Q Consensus 527 ~L~~L~Ls~N~l~ 539 (705)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4566666666654
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=61.72 E-value=5.3 Score=51.22 Aligned_cols=36 Identities=33% Similarity=0.317 Sum_probs=17.8
Q ss_pred eCCCCcCCCcCcccccCCCCCCeEecccCcccccCC
Q 005267 556 DLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 591 (705)
Q Consensus 556 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 591 (705)
||++|+|+...+..|..+++|+.|+|++|++.|.|.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 344555554444444455555555555555555443
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.77 E-value=9.2 Score=40.95 Aligned_cols=57 Identities=26% Similarity=0.302 Sum_probs=33.0
Q ss_pred CCccEEECCCCCCCCCCC-----CCCCCCcEEEccCC--cCCC--CCCCC-CCCCcEEEcccCCCCC
Q 005267 129 HTLFRLDLSRNFLTSIDH-----LPWKNLEFLTLDSN--LLQG--SLPNL-PPHMVQLSISNNSLTG 185 (705)
Q Consensus 129 ~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~l~~n--~~~~--~~~~~-~~~L~~L~l~~n~l~~ 185 (705)
+.+..+.|++|++..+.. ...++|+.|+|++| .+.. .++.. ...|++|-+.+|.+..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 556666666666655543 44566777777776 2221 11111 4557777788887754
No 94
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=49.79 E-value=15 Score=28.40 Aligned_cols=23 Identities=9% Similarity=0.353 Sum_probs=8.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhcCc
Q 005267 649 MLGYASGVVIGLSIGYMAFVTGR 671 (705)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~ 671 (705)
.+++++.+++++++..+++..|+
T Consensus 9 iialiv~~iiaIvvW~iv~ieYr 31 (81)
T PF00558_consen 9 IIALIVALIIAIVVWTIVYIEYR 31 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555455554333
No 95
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.66 E-value=28 Score=25.88 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=6.8
Q ss_pred hhhhhhhhhhhhhhh
Q 005267 652 YASGVVIGLSIGYMA 666 (705)
Q Consensus 652 ~~~~~~~~~~~~~~~ 666 (705)
+.+++++|+++++++
T Consensus 24 il~~f~~G~llg~l~ 38 (68)
T PF06305_consen 24 ILIAFLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555544444
No 96
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=44.22 E-value=19 Score=23.57 Aligned_cols=16 Identities=19% Similarity=0.050 Sum_probs=6.7
Q ss_pred eeehhhhhhhhhhhhh
Q 005267 646 KLAMLGYASGVVIGLS 661 (705)
Q Consensus 646 ~~~~~~~~~~~~~~~~ 661 (705)
+.+++++.+++++.++
T Consensus 13 Ia~~VvVPV~vI~~vl 28 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVL 28 (40)
T ss_pred EEEEEEechHHHHHHH
Confidence 3344444444444333
No 97
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.97 E-value=36 Score=19.61 Aligned_cols=11 Identities=45% Similarity=0.344 Sum_probs=6.3
Q ss_pred CCCCEEEccCC
Q 005267 103 HQLDWLDLSEN 113 (705)
Q Consensus 103 ~~L~~L~Ls~n 113 (705)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 98
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=30.23 E-value=21 Score=28.88 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=7.0
Q ss_pred hhhhhhhhhhhhhhhhh
Q 005267 650 LGYASGVVIGLSIGYMA 666 (705)
Q Consensus 650 ~~~~~~~~~~~~~~~~~ 666 (705)
+++++.+++++++++++
T Consensus 71 i~vg~~~~v~~lv~~l~ 87 (96)
T PTZ00382 71 ISVAVVAVVGGLVGFLC 87 (96)
T ss_pred EEeehhhHHHHHHHHHh
Confidence 33333334444444444
No 99
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=28.86 E-value=21 Score=31.27 Aligned_cols=6 Identities=0% Similarity=-0.352 Sum_probs=2.2
Q ss_pred ehhhhh
Q 005267 648 AMLGYA 653 (705)
Q Consensus 648 ~~~~~~ 653 (705)
+++++|
T Consensus 52 IGvVVG 57 (154)
T PF04478_consen 52 IGVVVG 57 (154)
T ss_pred EEEEec
Confidence 333333
No 100
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=27.18 E-value=1.3e+02 Score=29.60 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=5.5
Q ss_pred HHHHhhhhhhcc
Q 005267 684 SRKLRRVIRRGR 695 (705)
Q Consensus 684 ~~~~~~~~~~~~ 695 (705)
++++++++++..
T Consensus 242 k~k~~eMEr~A~ 253 (278)
T PF06697_consen 242 KKKIEEMERRAE 253 (278)
T ss_pred HHHHHHHHHhhc
Confidence 344455554433
No 101
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.83 E-value=40 Score=43.93 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=29.0
Q ss_pred EccCCccccccchhhhcCCCCCEEecCCCcCC
Q 005267 508 DLSSNRFQGEISEVLGKLNSLKSLNISHNNLT 539 (705)
Q Consensus 508 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 539 (705)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999888888999999999999999876
No 102
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=23.04 E-value=37 Score=35.85 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=16.2
Q ss_pred eeehhhhhhhhhhhhhhhhhhhh
Q 005267 646 KLAMLGYASGVVIGLSIGYMAFV 668 (705)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~ 668 (705)
.+++|++++++||+.+|+++.||
T Consensus 368 aIaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 368 AIAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred ceeeeeehhHHHHHHHHHHHhhh
Confidence 44566677777788888888863
No 103
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.73 E-value=65 Score=27.36 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=6.1
Q ss_pred hhhhhhhhhhhhh
Q 005267 649 MLGYASGVVIGLS 661 (705)
Q Consensus 649 ~~~~~~~~~~~~~ 661 (705)
++++++|+++|++
T Consensus 66 i~~Ii~gv~aGvI 78 (122)
T PF01102_consen 66 IIGIIFGVMAGVI 78 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHH
Confidence 3444445544443
No 104
>PRK11677 hypothetical protein; Provisional
Probab=20.88 E-value=39 Score=29.24 Aligned_cols=17 Identities=35% Similarity=0.986 Sum_probs=7.6
Q ss_pred eeeehhhhhhhhhhhhh
Q 005267 645 WKLAMLGYASGVVIGLS 661 (705)
Q Consensus 645 ~~~~~~~~~~~~~~~~~ 661 (705)
|.++++++++|+++|++
T Consensus 3 W~~a~i~livG~iiG~~ 19 (134)
T PRK11677 3 WEYALIGLVVGIIIGAV 19 (134)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
Done!