Query 005267
Match_columns 705
No_of_seqs 777 out of 4871
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 20:24:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.3E-77 3.2E-81 684.0 40.9 610 2-623 96-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.5E-66 5.1E-71 599.0 43.1 578 3-593 74-699 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 5.4E-58 1.9E-62 523.5 47.8 568 6-592 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-57 5.8E-62 519.4 48.2 578 8-614 6-626 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 2E-57 6.7E-62 528.5 39.6 549 10-624 8-593 (844)
6 3t6q_A CD180 antigen; protein- 100.0 1.2E-54 4.1E-59 489.2 43.0 530 9-592 15-565 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.3E-53 4.4E-58 480.7 40.6 509 6-567 33-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-53 1.1E-57 477.5 37.3 523 8-593 13-564 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-52 9.9E-57 485.1 37.8 519 33-616 7-566 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2E-51 7E-56 462.8 39.5 502 6-567 32-562 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 2.9E-48 1E-52 434.1 36.8 511 8-595 9-539 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 2.6E-46 8.8E-51 416.2 34.4 476 10-592 9-515 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 1.9E-45 6.5E-50 411.3 35.2 481 80-614 28-535 (570)
14 4eco_A Uncharacterized protein 100.0 5.1E-47 1.7E-51 426.4 20.3 449 80-588 81-601 (636)
15 2z81_A CD282 antigen, TOLL-lik 100.0 3.7E-45 1.3E-49 406.9 31.2 464 6-567 26-514 (549)
16 4eco_A Uncharacterized protein 100.0 2.2E-46 7.6E-51 421.2 20.6 450 55-566 81-603 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 5.4E-46 1.8E-50 410.5 22.9 452 58-592 3-486 (520)
18 4ecn_A Leucine-rich repeat pro 100.0 9.4E-46 3.2E-50 422.1 24.9 392 113-586 435-863 (876)
19 2z7x_B TOLL-like receptor 1, v 100.0 4.1E-45 1.4E-49 403.4 25.5 461 9-567 3-485 (520)
20 4g8a_A TOLL-like receptor 4; l 100.0 6.5E-43 2.2E-47 396.3 39.6 512 7-592 53-585 (635)
21 4ecn_A Leucine-rich repeat pro 100.0 4.2E-44 1.4E-48 408.5 26.6 383 81-563 424-864 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-42 1E-46 383.6 28.5 488 7-621 32-546 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 7.5E-41 2.6E-45 379.3 38.2 522 34-614 35-584 (635)
24 1jl5_A Outer protein YOPM; leu 100.0 6.2E-42 2.1E-46 368.1 21.8 302 78-422 9-310 (454)
25 3v47_A TOLL-like receptor 5B a 100.0 1.4E-40 4.9E-45 360.8 31.1 383 154-596 14-417 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 4.6E-41 1.6E-45 361.3 22.4 420 5-592 10-434 (454)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.7E-40 1.3E-44 366.7 27.1 454 81-614 32-514 (562)
28 3v47_A TOLL-like receptor 5B a 100.0 3E-38 1E-42 342.5 29.8 378 174-614 13-412 (455)
29 2id5_A Lingo-1, leucine rich r 100.0 1.8E-37 6.3E-42 338.2 26.0 348 198-615 14-361 (477)
30 3bz5_A Internalin-J, INLJ; leu 100.0 3.1E-37 1.1E-41 331.8 25.2 365 21-459 33-398 (457)
31 1o6v_A Internalin A; bacterial 100.0 6.8E-36 2.3E-40 324.2 32.9 345 171-589 46-390 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 6.5E-36 2.2E-40 321.5 29.5 357 52-571 39-395 (457)
33 1o6v_A Internalin A; bacterial 100.0 3.8E-35 1.3E-39 318.4 32.8 324 170-565 67-390 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 1E-34 3.5E-39 316.5 28.0 345 154-591 15-360 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 6.2E-34 2.1E-38 301.7 27.3 333 170-613 44-377 (390)
36 3oja_B Anopheles plasmodium-re 100.0 4.3E-34 1.5E-38 319.5 25.7 334 194-614 50-384 (597)
37 4fmz_A Internalin; leucine ric 100.0 1.8E-32 6.1E-37 285.8 29.9 307 191-587 40-346 (347)
38 4fmz_A Internalin; leucine ric 100.0 6.8E-32 2.3E-36 281.4 30.6 304 170-563 43-346 (347)
39 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-33 4.8E-38 288.7 16.8 259 290-619 50-312 (313)
40 3o6n_A APL1; leucine-rich repe 100.0 2E-32 6.9E-37 290.1 24.5 307 6-351 45-353 (390)
41 3oja_B Anopheles plasmodium-re 100.0 6.3E-32 2.2E-36 302.0 27.8 312 170-567 50-362 (597)
42 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-30 4.1E-35 269.9 25.4 288 243-585 34-331 (332)
43 1ogq_A PGIP-2, polygalacturona 100.0 8.8E-32 3E-36 275.3 15.6 251 243-588 51-306 (313)
44 1xku_A Decorin; proteoglycan, 100.0 2.9E-30 1E-34 266.8 27.1 288 244-585 33-330 (330)
45 1z7x_W Ribonuclease inhibitor; 100.0 6E-34 2E-38 309.4 -2.1 379 171-588 3-441 (461)
46 1xku_A Decorin; proteoglycan, 100.0 3.7E-29 1.3E-33 258.6 30.2 221 151-377 53-279 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-29 7.7E-34 260.3 26.7 282 131-419 35-330 (332)
48 1z7x_W Ribonuclease inhibitor; 100.0 3.8E-33 1.3E-37 303.0 -3.7 355 195-589 3-413 (461)
49 2z80_A TOLL-like receptor 2, v 100.0 4.1E-28 1.4E-32 253.1 19.5 207 193-423 29-236 (353)
50 2z80_A TOLL-like receptor 2, v 100.0 7.7E-28 2.6E-32 251.1 19.2 280 150-452 31-318 (353)
51 2z66_A Variable lymphocyte rec 100.0 2.6E-27 9E-32 241.9 21.1 250 174-452 10-265 (306)
52 3ogk_B Coronatine-insensitive 100.0 6.3E-30 2.2E-34 286.9 1.3 395 101-584 110-548 (592)
53 3zyi_A Leucine-rich repeat-con 100.0 7E-27 2.4E-31 252.3 25.0 92 501-592 217-308 (452)
54 3zyj_A Leucine-rich repeat-con 99.9 9.5E-27 3.2E-31 250.3 24.5 91 501-591 206-296 (440)
55 3ogk_B Coronatine-insensitive 99.9 5.5E-30 1.9E-34 287.4 -2.3 392 28-445 110-548 (592)
56 2z66_A Variable lymphocyte rec 99.9 2.2E-27 7.6E-32 242.5 17.2 247 153-400 10-263 (306)
57 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-28 3.7E-33 253.2 7.0 266 221-592 13-281 (317)
58 3zyj_A Leucine-rich repeat-con 99.9 5E-26 1.7E-30 244.7 25.1 226 196-422 65-292 (440)
59 3zyi_A Leucine-rich repeat-con 99.9 4.5E-26 1.5E-30 246.0 24.8 245 153-421 57-302 (452)
60 1ozn_A Reticulon 4 receptor; N 99.9 8E-27 2.7E-31 235.7 16.4 181 219-422 57-238 (285)
61 1wwl_A Monocyte differentiatio 99.9 1.5E-28 5.3E-33 251.4 3.8 249 289-589 42-311 (312)
62 4fcg_A Uncharacterized protein 99.9 2.5E-26 8.5E-31 236.2 20.2 232 171-421 81-313 (328)
63 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-26 3.9E-31 234.5 17.4 222 153-374 14-238 (285)
64 4fcg_A Uncharacterized protein 99.9 3.5E-26 1.2E-30 235.1 20.0 231 148-398 79-314 (328)
65 3g06_A SSPH2 (leucine-rich rep 99.9 2.4E-25 8.4E-30 246.0 27.7 264 31-334 41-304 (622)
66 3g06_A SSPH2 (leucine-rich rep 99.9 4E-25 1.4E-29 244.3 28.7 261 219-591 41-301 (622)
67 3oja_A Leucine-rich immune mol 99.9 3.3E-27 1.1E-31 256.1 11.2 234 267-582 35-270 (487)
68 3o53_A Protein LRIM1, AGAP0063 99.9 3.6E-27 1.2E-31 241.7 4.3 267 196-568 11-281 (317)
69 1wwl_A Monocyte differentiatio 99.9 8.9E-27 3E-31 238.3 5.6 248 191-449 39-310 (312)
70 2z62_A TOLL-like receptor 4, v 99.9 3.2E-24 1.1E-28 215.4 20.8 210 338-593 29-243 (276)
71 2z62_A TOLL-like receptor 4, v 99.9 9.4E-24 3.2E-28 212.0 21.1 225 155-400 12-239 (276)
72 3oja_A Leucine-rich immune mol 99.9 3.5E-25 1.2E-29 240.2 11.3 236 170-417 33-270 (487)
73 2p1m_B Transport inhibitor res 99.9 8E-27 2.8E-31 261.8 -3.2 375 170-587 104-519 (594)
74 2o6q_A Variable lymphocyte rec 99.9 3.1E-23 1E-27 207.3 22.1 186 362-592 38-223 (270)
75 2p1m_B Transport inhibitor res 99.9 9E-27 3.1E-31 261.3 -4.8 437 83-587 46-544 (594)
76 4glp_A Monocyte differentiatio 99.9 1.8E-23 6.2E-28 213.5 13.2 229 315-588 65-308 (310)
77 2o6q_A Variable lymphocyte rec 99.9 5.5E-22 1.9E-26 198.2 23.0 201 196-421 17-217 (270)
78 3rfs_A Internalin B, repeat mo 99.9 7.9E-23 2.7E-27 204.5 13.4 155 171-327 63-218 (272)
79 1p9a_G Platelet glycoprotein I 99.9 1.4E-21 4.8E-26 196.9 22.3 200 148-349 8-207 (290)
80 3rfs_A Internalin B, repeat mo 99.9 2.6E-22 8.8E-27 200.8 16.2 202 241-455 40-242 (272)
81 3goz_A Leucine-rich repeat-con 99.9 8E-24 2.7E-28 221.2 4.4 83 247-329 3-95 (362)
82 1p9a_G Platelet glycoprotein I 99.9 2.6E-21 8.9E-26 194.9 21.8 204 190-422 5-208 (290)
83 3goz_A Leucine-rich repeat-con 99.9 2.2E-23 7.5E-28 217.8 6.6 225 224-448 4-266 (362)
84 3m19_A Variable lymphocyte rec 99.9 7.7E-22 2.6E-26 194.8 16.0 121 501-622 106-232 (251)
85 2ast_B S-phase kinase-associat 99.9 4.4E-23 1.5E-27 213.7 6.4 230 314-592 70-311 (336)
86 3m19_A Variable lymphocyte rec 99.9 4.9E-21 1.7E-25 189.1 19.6 178 152-329 16-194 (251)
87 2ast_B S-phase kinase-associat 99.9 1.2E-22 4.1E-27 210.4 6.9 221 172-395 48-282 (336)
88 2ca6_A RAN GTPase-activating p 99.9 3.1E-23 1.1E-27 219.0 2.3 256 282-591 24-320 (386)
89 2xwt_C Thyrotropin receptor; s 99.9 6.1E-21 2.1E-25 187.0 16.4 86 219-304 32-119 (239)
90 2xwt_C Thyrotropin receptor; s 99.9 7.1E-21 2.4E-25 186.5 16.3 177 196-374 32-218 (239)
91 4glp_A Monocyte differentiatio 99.9 1.6E-21 5.5E-26 199.1 11.9 198 219-421 92-306 (310)
92 2ca6_A RAN GTPase-activating p 99.8 5.5E-23 1.9E-27 217.1 0.2 244 187-452 24-320 (386)
93 1h6u_A Internalin H; cell adhe 99.8 3.2E-20 1.1E-24 188.9 18.7 190 338-588 42-231 (308)
94 1h6u_A Internalin H; cell adhe 99.8 1.2E-19 3.9E-24 184.8 19.1 193 192-422 38-230 (308)
95 4ay9_X Follicle-stimulating ho 99.8 3.8E-19 1.3E-23 184.6 19.7 240 154-445 13-256 (350)
96 4ay9_X Follicle-stimulating ho 99.8 4.9E-19 1.7E-23 183.8 19.1 235 199-466 13-252 (350)
97 2o6s_A Variable lymphocyte rec 99.8 5.8E-19 2E-23 168.8 17.3 176 153-335 10-186 (208)
98 2o6s_A Variable lymphocyte rec 99.8 5.5E-19 1.9E-23 169.0 14.9 176 174-358 10-186 (208)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 2.3E-19 8E-24 172.7 10.2 92 501-592 80-171 (220)
100 3cvr_A Invasion plasmid antige 99.8 4.3E-18 1.5E-22 185.7 20.2 148 241-408 99-253 (571)
101 3cvr_A Invasion plasmid antige 99.8 3.9E-18 1.3E-22 186.1 19.8 183 130-333 60-249 (571)
102 2xot_A Amphoterin-induced prot 99.8 2.3E-18 7.8E-23 179.5 13.1 91 501-591 111-206 (361)
103 1h6t_A Internalin B; cell adhe 99.8 6.4E-18 2.2E-22 170.3 15.2 171 359-588 44-214 (291)
104 3e6j_A Variable lymphocyte rec 99.8 1.3E-17 4.6E-22 161.6 16.7 91 501-592 87-177 (229)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 2.5E-17 8.5E-22 158.5 17.0 112 218-329 57-168 (220)
106 2v9t_B SLIT homolog 2 protein 99.7 2.9E-17 1E-21 158.0 17.0 132 196-327 33-165 (220)
107 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.7E-22 174.4 15.0 175 153-327 21-202 (361)
108 2v9t_B SLIT homolog 2 protein 99.7 3.7E-17 1.3E-21 157.3 16.8 151 153-303 14-165 (220)
109 1h6t_A Internalin B; cell adhe 99.7 3.1E-17 1.1E-21 165.2 15.5 169 241-422 45-213 (291)
110 1m9s_A Internalin B; cell inva 99.7 2.9E-17 1E-21 181.3 16.2 82 501-588 130-211 (605)
111 3e6j_A Variable lymphocyte rec 99.7 1.5E-16 5.2E-21 154.1 18.0 153 153-329 22-174 (229)
112 1w8a_A SLIT protein; signaling 99.7 7.6E-18 2.6E-22 158.4 8.3 114 501-614 53-166 (192)
113 1m9s_A Internalin B; cell inva 99.7 1.3E-16 4.3E-21 176.3 17.3 106 191-303 105-210 (605)
114 4ezg_A Putative uncharacterize 99.7 1.1E-16 3.6E-21 151.4 12.6 84 501-588 111-195 (197)
115 1xeu_A Internalin C; cellular 99.7 4.6E-17 1.6E-21 161.3 10.3 168 338-589 20-187 (263)
116 4ezg_A Putative uncharacterize 99.7 9.8E-17 3.4E-21 151.7 11.9 150 171-327 44-194 (197)
117 1xeu_A Internalin C; cellular 99.7 6.8E-17 2.3E-21 160.0 10.1 171 312-565 17-187 (263)
118 1dce_A Protein (RAB geranylger 99.7 2.1E-19 7.1E-24 197.4 -8.9 79 501-581 485-567 (567)
119 1dce_A Protein (RAB geranylger 99.7 5.1E-19 1.8E-23 194.2 -9.6 105 220-329 443-548 (567)
120 1w8a_A SLIT protein; signaling 99.6 1.1E-15 3.7E-20 143.7 11.2 131 198-330 11-142 (192)
121 4b8c_D Glucose-repressible alc 99.6 8.4E-17 2.9E-21 182.4 3.3 149 178-331 208-358 (727)
122 4b8c_D Glucose-repressible alc 99.6 1.3E-16 4.5E-21 180.7 4.5 151 211-371 216-369 (727)
123 3sb4_A Hypothetical leucine ri 99.6 1.1E-15 3.8E-20 157.0 9.9 260 171-441 25-327 (329)
124 3sb4_A Hypothetical leucine ri 99.6 3.7E-16 1.3E-20 160.6 5.6 217 194-416 100-328 (329)
125 2wfh_A SLIT homolog 2 protein 99.6 9.4E-15 3.2E-19 137.1 13.9 91 501-591 53-143 (193)
126 2ell_A Acidic leucine-rich nuc 99.6 7.5E-15 2.6E-19 134.8 10.5 133 170-303 23-160 (168)
127 2ell_A Acidic leucine-rich nuc 99.6 1E-14 3.5E-19 133.9 10.2 132 194-327 23-160 (168)
128 4fdw_A Leucine rich hypothetic 99.5 2.2E-13 7.6E-18 142.8 20.9 269 242-586 113-382 (401)
129 2wfh_A SLIT homolog 2 protein 99.5 5.7E-14 1.9E-18 131.8 14.7 128 198-328 13-140 (193)
130 4fdw_A Leucine rich hypothetic 99.5 1.9E-13 6.4E-18 143.4 19.9 261 172-446 114-381 (401)
131 2je0_A Acidic leucine-rich nuc 99.5 8.6E-15 2.9E-19 131.5 8.2 86 237-322 59-148 (149)
132 2o6r_A Variable lymphocyte rec 99.5 7.9E-14 2.7E-18 129.1 14.8 132 198-331 10-141 (177)
133 2je0_A Acidic leucine-rich nuc 99.5 8.9E-15 3.1E-19 131.3 7.9 128 170-299 16-149 (149)
134 2o6r_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 128.1 14.9 129 154-305 11-139 (177)
135 3g39_A Variable lymphocyte rec 99.5 7.5E-14 2.6E-18 128.0 10.5 92 501-592 29-120 (170)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-13 4.5E-18 127.4 10.8 86 501-588 63-154 (176)
137 4fs7_A Uncharacterized protein 99.5 3.4E-12 1.2E-16 134.5 22.2 329 20-414 61-393 (394)
138 2r9u_A Variable lymphocyte rec 99.5 1.7E-13 5.9E-18 126.1 10.2 92 501-592 32-123 (174)
139 1a9n_A U2A', U2A'; complex (nu 99.4 1.2E-13 4.1E-18 127.7 8.4 133 190-327 14-153 (176)
140 1ds9_A Outer arm dynein; leuci 99.4 2.9E-15 9.9E-20 141.6 -4.9 83 501-587 92-185 (198)
141 4fs7_A Uncharacterized protein 99.4 5.6E-12 1.9E-16 132.8 19.4 133 186-324 62-195 (394)
142 1ds9_A Outer arm dynein; leuci 99.4 4.8E-15 1.6E-19 140.1 -7.5 84 241-327 17-106 (198)
143 3g39_A Variable lymphocyte rec 99.3 7.6E-12 2.6E-16 114.6 12.5 87 242-328 30-116 (170)
144 2r9u_A Variable lymphocyte rec 99.3 1.6E-11 5.4E-16 112.8 12.7 104 198-303 15-118 (174)
145 3un9_A NLR family member X1; l 99.3 3.1E-13 1E-17 140.3 -1.1 88 501-588 154-253 (372)
146 4gt6_A Cell surface protein; l 99.2 8.7E-10 3E-14 116.0 23.8 125 218-348 265-389 (394)
147 3un9_A NLR family member X1; l 99.2 3.5E-13 1.2E-17 139.9 -5.0 157 171-327 72-252 (372)
148 2ifg_A High affinity nerve gro 99.2 3.3E-11 1.1E-15 124.7 9.8 90 501-591 30-120 (347)
149 4gt6_A Cell surface protein; l 99.2 2E-09 6.8E-14 113.2 22.7 329 24-420 57-389 (394)
150 2ifg_A High affinity nerve gro 99.1 2E-10 7E-15 118.7 9.3 107 505-613 11-119 (347)
151 4h09_A Hypothetical leucine ri 98.9 6.6E-08 2.3E-12 101.0 21.7 123 26-160 42-168 (379)
152 4h09_A Hypothetical leucine ri 98.8 5.1E-07 1.7E-11 94.2 24.7 66 517-583 277-342 (379)
153 2ra8_A Uncharacterized protein 98.8 1.2E-09 4E-14 112.3 3.2 62 502-563 252-320 (362)
154 2ra8_A Uncharacterized protein 98.8 1.1E-08 3.9E-13 104.9 9.3 163 354-561 165-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 6.9E-08 2.3E-12 89.3 4.0 86 502-587 65-164 (185)
156 3rw6_A Nuclear RNA export fact 98.4 1.1E-07 3.9E-12 92.2 4.0 84 507-592 148-238 (267)
157 3rw6_A Nuclear RNA export fact 98.4 3.5E-07 1.2E-11 88.8 6.7 79 500-580 168-257 (267)
158 1io0_A Tropomodulin; LRR prote 98.4 6.6E-08 2.3E-12 89.4 1.3 117 24-142 30-164 (185)
159 3e4g_A ATP synthase subunit S, 98.1 5.9E-07 2E-11 80.7 1.4 84 502-585 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.8 7.2E-06 2.5E-10 73.6 2.6 82 338-419 62-149 (176)
161 3rfe_A Platelet glycoprotein I 97.4 0.00022 7.6E-09 60.9 6.6 60 530-591 12-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00019 6.5E-09 65.6 3.9 86 501-586 69-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00017 5.8E-09 66.0 1.6 62 52-113 67-136 (197)
164 3rfe_A Platelet glycoprotein I 96.5 0.0056 1.9E-07 52.1 6.8 55 154-208 12-68 (130)
165 2lz0_A Uncharacterized protein 53.4 14 0.00048 29.0 4.2 46 18-65 8-53 (100)
166 2lz0_A Uncharacterized protein 43.1 46 0.0016 26.0 5.7 39 235-274 13-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.3e-77 Score=683.98 Aligned_cols=610 Identities=34% Similarity=0.493 Sum_probs=509.3
Q ss_pred CcCCCCCCEEECCCCCCCccCCc--cCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCc---
Q 005267 2 FTNLTQLSSLNLADNQLIGSIPS--SIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVN--- 76 (705)
Q Consensus 2 ~~~l~~L~~L~Ls~n~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--- 76 (705)
|+++++|++|||++|.+.+.+|. .++++++|++|+|++|.+.+.+|..++.++++|++|++++| ...+..+..
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~ 173 (768)
T 3rgz_A 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN--SISGANVVGWVL 173 (768)
T ss_dssp CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS--CCEEETHHHHHH
T ss_pred hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC--ccCCcCChhhhh
Confidence 56677888888888888777777 77888888888888888877777666677888888888888 344444432
Q ss_pred c-CCCCCCEEecCCCCCCCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC---CCCCCC
Q 005267 77 S-SFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH---LPWKNL 152 (705)
Q Consensus 77 ~-~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~---~~~~~L 152 (705)
. ++++|++|++++|.+..... +..+++|++|++++|.+++.+|. +..+ ++|++|++++|.+++..+ ..+++|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L 249 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF-LGDC--SALQHLDISGNKLSGDFSRAISTCTEL 249 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB-CTTC--CSCCEEECCSSCCCSCHHHHTTTCSSC
T ss_pred hccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc-cccC--CCCCEEECcCCcCCCcccHHHhcCCCC
Confidence 2 67888888888888733322 37788899999999988877776 7766 899999999999887654 678889
Q ss_pred cEEEccCCcCCCCCCCC-CCCCcEEEcccCCCCCCCcccccCC-CCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCc
Q 005267 153 EFLTLDSNLLQGSLPNL-PPHMVQLSISNNSLTGEIPSSFCNL-SSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNN 229 (705)
Q Consensus 153 ~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~ 229 (705)
++|++++|.+++.+|.. +++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..++. ++|++|++++|.
T Consensus 250 ~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp CEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred CEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 99999999998887776 7889999999999998888888775 99999999999999888888876 899999999999
Q ss_pred CCcccchh-ccCCCCCCEEECcCCcCcCCCCccCCCCC-cCcEEEccCCcCCCCCCccccC--CCCCcEEEccCccccCC
Q 005267 230 FQGTIPQT-YAKGCNLTYLRLSGNHLEGPLPPSLSNCV-NLQVLDVGNNNLSGPIPECLGN--STRLSFLDVRNNNLSGP 305 (705)
Q Consensus 230 l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~ 305 (705)
+.+.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+.. +++|++|++++|.+++.
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 98777765 89999999999999999988898888887 8999999999998888888777 88999999999999999
Q ss_pred CCccccCCCCCCeEeccCcccccccCcccccC-cccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCC
Q 005267 306 IPECLGNSTSLSFLDVGNNSLSGPIPEYLGNS-TLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNC 384 (705)
Q Consensus 306 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 384 (705)
+|..+.++++|+.|++++|.+++.+|..++.. +|+.|++++|.+++.+|..+..+++|++|++++|++++.+|..+.++
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 99999999999999999999999888877654 99999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhcccccc
Q 005267 385 RHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMR 464 (705)
Q Consensus 385 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~ 464 (705)
++|++|++++|++++.+|.++..+++|++|++++|++.+.+|..+ ..+++|+.|++++|+++|.+|..+....... .
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~-~ 566 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI-A 566 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGTTTTCB-C
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhcccchh-h
Confidence 999999999999999999999999999999999999999888766 6789999999999999999998765432211 1
Q ss_pred ccCCc-cccccccc-----------------------------ccccceeeEEEEecCchHHHhhhhccccEEEccCCcc
Q 005267 465 RDDNS-IEVNYMRS-----------------------------LNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRF 514 (705)
Q Consensus 465 ~~~~~-~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 514 (705)
..... ....++.. ........ ....|........+++|+.|||++|++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS--RVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS--CEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred hhccccccccccccccccccccccccccccccccchhhhcccccccccccc--ceecccCchhhhccccccEEECcCCcc
Confidence 11000 00000000 00000000 000111111223368899999999999
Q ss_pred ccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCCCC
Q 005267 515 QGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGP 594 (705)
Q Consensus 515 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 594 (705)
+|.+|..++++++|++|+|++|+++|.+|..++++++|++|||++|+++|.+|..+.++++|++|++++|+++|.||.++
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 005267 595 QFNTFGIDSYSGNVGLCGFPLSKICRIDE 623 (705)
Q Consensus 595 ~~~~~~~~~~~~n~~lcg~~~~~~c~~~~ 623 (705)
+|.+|...+|.||+++||.|+. .|..+.
T Consensus 725 ~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 725 QFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp SGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred hhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 9999999999999999999987 796543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-66 Score=599.01 Aligned_cols=578 Identities=31% Similarity=0.420 Sum_probs=393.2
Q ss_pred cCCCCCCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCc--ccccCCCCCCEEEccCCCCcceecccCcc--C
Q 005267 3 TNLTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVEL--YDFAKLKNLKYLILSNISLSVSTKLTVNS--S 78 (705)
Q Consensus 3 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--~ 78 (705)
.++++|+.++++.+.+. .+|..|+++++|++|+|++|.++|.+|. .+ +++++|++|+|++| ...+.++... +
T Consensus 74 ~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l-~~l~~L~~L~Ls~n--~l~~~~~~~~~~~ 149 (768)
T 3rgz_A 74 LSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSL-GSCSGLKFLNVSSN--TLDFPGKVSGGLK 149 (768)
T ss_dssp TTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGG-GGCTTCCEEECCSS--EEECCSSCCSCCC
T ss_pred hccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHH-hCCCCCCEEECcCC--ccCCcCCHHHhcc
Confidence 44555666666655543 2445666667777777777766666655 33 66677777777766 3344444432 5
Q ss_pred CCCCCEEecCCCCCCC-CChh---ccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC--CCCCCC
Q 005267 79 FPNLWALGLSACNISE-FPDI---LKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH--LPWKNL 152 (705)
Q Consensus 79 l~~L~~L~L~~n~l~~-lp~~---l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~--~~~~~L 152 (705)
+++|++|++++|.+.. .|.. +.++++|++|++++|.+++..+. ..+ ++|++|++++|.+++..+ ..+++|
T Consensus 150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l--~~L~~L~Ls~n~l~~~~~~l~~l~~L 225 (768)
T 3rgz_A 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRC--VNLEFLDVSSNNFSTGIPFLGDCSAL 225 (768)
T ss_dssp CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTC--TTCCEEECCSSCCCSCCCBCTTCCSC
T ss_pred CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccC--CcCCEEECcCCcCCCCCcccccCCCC
Confidence 6667777777776633 3333 56666777777777766655443 333 667777777776666544 456667
Q ss_pred cEEEccCCcCCCCCCCC---CCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC--CCCCEEEcCC
Q 005267 153 EFLTLDSNLLQGSLPNL---PPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN--STLENLDLGM 227 (705)
Q Consensus 153 ~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~--~~L~~L~L~~ 227 (705)
++|++++|.+++.+|.. +++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+.. ++|++|++++
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS
T ss_pred CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC
Confidence 77777777666655432 566677777777666655543 6666777777777766666666543 6677777777
Q ss_pred CcCCcccchhccCCCCCCEEECcCCcCcCCCCcc-CCCCCcCcEEEccCCcCCCCCCccccCCC-CCcEEEccCccccCC
Q 005267 228 NNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPS-LSNCVNLQVLDVGNNNLSGPIPECLGNST-RLSFLDVRNNNLSGP 305 (705)
Q Consensus 228 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~ 305 (705)
|.+++.+|..|+.+++|++|++++|.+++.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.
T Consensus 304 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~ 383 (768)
T 3rgz_A 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383 (768)
T ss_dssp SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC
Confidence 7777667777777777777777777776666654 66777777777777777666676666665 677777777777766
Q ss_pred CCccccC--CCCCCeEeccCcccccccCcccccC-cccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCcccc
Q 005267 306 IPECLGN--STSLSFLDVGNNSLSGPIPEYLGNS-TLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLV 382 (705)
Q Consensus 306 ~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 382 (705)
+|..+.. +++|+.|++++|.+++.+|..+... +|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|..+.
T Consensus 384 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 463 (768)
T 3rgz_A 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463 (768)
T ss_dssp CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 6666655 6677777777777777777665543 777777777777777777777777777777777777777777777
Q ss_pred CCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhcccc
Q 005267 383 NCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAM 462 (705)
Q Consensus 383 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l 462 (705)
.+++|++|++++|++++.+|.++..+++|++|++++|++.+.+|..+ ..+++|++|++++|+++|.+|.. +..++.+
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L 540 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAE-LGDCRSL 540 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGG-GGGCTTC
T ss_pred CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCcccCcCCHH-HcCCCCC
Confidence 77777777777777777777777777777788887777777776654 45677788888888877777754 3445555
Q ss_pred ccccCCccccc-cccc----------ccccc-eeeEEEE----------------ecCchHHHhhhhccccEEEccCCcc
Q 005267 463 MRRDDNSIEVN-YMRS----------LNYSY-YESISLT----------------MKGNDIQMERILTTFATIDLSSNRF 514 (705)
Q Consensus 463 ~~~~~~~~~~~-~~~~----------~~~~~-~~~~~~~----------------~~~~~~~~~~~l~~L~~L~Ls~n~l 514 (705)
..++....... .+.. ..... ....... ..+........+..+..++++.|.+
T Consensus 541 ~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 620 (768)
T 3rgz_A 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620 (768)
T ss_dssp CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEE
T ss_pred CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccccee
Confidence 55544332211 0000 00000 0000010 0111111122344555667777888
Q ss_pred ccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCCC
Q 005267 515 QGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG 593 (705)
Q Consensus 515 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 593 (705)
.|.+|..++.+++|++|+|++|+++|.+|..++++++|+.|+|++|+++|.+|..+.++++|++|++++|+++|.||..
T Consensus 621 ~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp EEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred cccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 8888888888999999999999999999999999999999999999999999999999999999999999999999964
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.4e-58 Score=523.46 Aligned_cols=568 Identities=24% Similarity=0.262 Sum_probs=377.1
Q ss_pred CCCCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccC-cc-CCCCCC
Q 005267 6 TQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTV-NS-SFPNLW 83 (705)
Q Consensus 6 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~-~l~~L~ 83 (705)
+++++|++++|.+++..+..|.++++|++|+|++|.+++ +++..|+++++|++|+|++|.+. .++. .+ ++++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELS---QLSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCC---CCCTTTTTTCTTCS
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccC---ccChhhhccCCCCC
Confidence 357777777777766655667777777777777777763 33344467777777777776432 2332 22 667777
Q ss_pred EEecCCCCCCCCC-hhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC-----CCCCCCcEEEc
Q 005267 84 ALGLSACNISEFP-DILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH-----LPWKNLEFLTL 157 (705)
Q Consensus 84 ~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~l 157 (705)
+|++++|.+..++ ..+.++++|++|++++|.+++..|..+..+ ++|++|++++|.+++..+ ..+++|++|++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL--ENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC--TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhccc--ccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 7777777775555 456677777777777777766666655555 677777777777666554 23466777777
Q ss_pred cCCcCCCCCCCC---CCCCcEEEcccCCCCCCCccccc---CCCCCcEEEcccCcCCccCCcccCC---CCCCEEEcCCC
Q 005267 158 DSNLLQGSLPNL---PPHMVQLSISNNSLTGEIPSSFC---NLSSIQYLYLSNNSLSGQIPQCLGN---STLENLDLGMN 228 (705)
Q Consensus 158 ~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~ls~n~~~~~~~~~~~~---~~L~~L~L~~n 228 (705)
++|.+++..|.. +++|+.|+++++.+.......+. ..++|+.|++++|.+.+..|..+.. ++|++|++++|
T Consensus 179 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n 258 (680)
T 1ziw_A 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258 (680)
T ss_dssp TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS
T ss_pred CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC
Confidence 777776655543 44455555555544322111110 2366777777777777776666654 34888888888
Q ss_pred cCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCC-----CCCc----cccCCCCCcEEEccC
Q 005267 229 NFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSG-----PIPE----CLGNSTRLSFLDVRN 299 (705)
Q Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~----~~~~l~~L~~L~L~~ 299 (705)
.+++..|..|+.+++|++|++++|.+.+..|..+..+++|++|++++|...+ .+|. .|..+++|++|++++
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence 8877777777888888888888888877777777888888888887765432 2222 566777888888888
Q ss_pred ccccCCCCccccCCCCCCeEeccCccccccc-C-ccc---ccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCC
Q 005267 300 NNLSGPIPECLGNSTSLSFLDVGNNSLSGPI-P-EYL---GNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLE 374 (705)
Q Consensus 300 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~-~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 374 (705)
|.+++..+..|.++++|++|++++|.+.... + ..+ ...+|+.|++++|++++..|..+..+++|+.|++++|.+.
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 8887777777778888888888877643221 1 111 1236778888888887777777777788888888888777
Q ss_pred CCCC-ccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcC--CCCCCCCCCCCCCccEEEccCCcCcccC
Q 005267 375 GPLP-PSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCG--PIGDTKTRVPFPKLRIIDLSYNQFTGVL 451 (705)
Q Consensus 375 ~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 451 (705)
+.+| ..|.++++|++|++++|++.+..+..+..+++|+.|++++|.+.+ ..|..+ ..+++|+.|++++|++++..
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N~l~~i~ 496 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNNNIANIN 496 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSSCCCCCC
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCEEECCCCCCCcCC
Confidence 6554 567777888888888887777777777777788888888777653 333333 56777788888887777544
Q ss_pred ChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEE
Q 005267 452 PIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSL 531 (705)
Q Consensus 452 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 531 (705)
+ ..+.+++.+..++........+...... +........+++|++|+|++|+++...+..|+++++|++|
T Consensus 497 ~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 497 D-DMLEGLEKLEILDLQHNNLARLWKHANP----------GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp T-TTTTTCTTCCEEECCSSCCGGGGSTTST----------TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred h-hhhccccccCEEeCCCCCccccchhhcc----------CCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence 4 3334444444444333222111100000 0000012236778888888888886555668888888888
Q ss_pred ecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCccccc-CCCCCCeEecccCcccccCCC
Q 005267 532 NISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLA-SLNYLSVLNLSNNQLEGPIPG 592 (705)
Q Consensus 532 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~ip~ 592 (705)
+|++|++++..+..|..+++|+.|+|++|++++..|..+. .+++|+.+++++|++.|.|+.
T Consensus 566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 8888888877677778888888888888888877777776 678888888888888888774
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.7e-57 Score=519.38 Aligned_cols=578 Identities=21% Similarity=0.215 Sum_probs=478.2
Q ss_pred CCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCEEe
Q 005267 8 LSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALG 86 (705)
Q Consensus 8 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~ 86 (705)
-+.+|.++++++ .+|..+. +++++|+|++|.++ .++...|+++++|++|++++|. ..+..+..+ ++++|++|+
T Consensus 6 ~~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~ 79 (680)
T 1ziw_A 6 HEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNT--ISKLEPELCQKLPMLKVLN 79 (680)
T ss_dssp SSEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSC--CCCCCTTHHHHCTTCCEEE
T ss_pred CCeeECCCCCcc-ccccccC--CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCc--cCccCHHHHhcccCcCEEE
Confidence 367899999987 5676665 79999999999998 5666667999999999999994 444445444 899999999
Q ss_pred cCCCCCCCCCh-hccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC---CCCCCCcEEEccCCcC
Q 005267 87 LSACNISEFPD-ILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH---LPWKNLEFLTLDSNLL 162 (705)
Q Consensus 87 L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~l~~n~~ 162 (705)
+++|.+..+|. .|..+++|++|++++|.+++..|..+..+ ++|++|++++|.+++..+ ..+++|++|++++|.+
T Consensus 80 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ--KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC--TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred CCCCccCccChhhhccCCCCCEEECCCCccCccChhHcccc--CCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 99999998886 69999999999999999997777788877 999999999999998766 4788999999999999
Q ss_pred CCCCCCC-----CCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCC----cccCCCCCCEEEcCCCcCCcc
Q 005267 163 QGSLPNL-----PPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIP----QCLGNSTLENLDLGMNNFQGT 233 (705)
Q Consensus 163 ~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~----~~~~~~~L~~L~L~~n~l~~~ 233 (705)
++..+.. .++|++|++++|.+++..|..+..+++|+.|+++++.+..... ..+..++|++|++++|.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence 8876642 4789999999999999999999999999999999988754322 222448999999999999999
Q ss_pred cchhccCCCC--CCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccC-----CC
Q 005267 234 IPQTYAKGCN--LTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSG-----PI 306 (705)
Q Consensus 234 ~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~ 306 (705)
.|..|..++. |++|++++|.+++..|..|..+++|++|++++|.+.+..|..|..+++|+.|++++|...+ .+
T Consensus 238 ~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp CTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred ChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence 9999988765 9999999999998888999999999999999999999999999999999999999876553 22
Q ss_pred C----ccccCCCCCCeEeccCcccccccCccccc-CcccEEEcCCCccccc--ccccccC--CCCccEEEccCCcCCCCC
Q 005267 307 P----ECLGNSTSLSFLDVGNNSLSGPIPEYLGN-STLEVLDMRMNKFSGS--LPQTFGK--SCVLVSLKLNGNRLEGPL 377 (705)
Q Consensus 307 ~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~--~~~~~~~--~~~L~~L~L~~n~l~~~~ 377 (705)
| ..|..+++|+.|++++|.+.+..+..+.. .+|++|++++|.+... ....|.. .++|+.|++++|++++..
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~ 397 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC
Confidence 3 26889999999999999999887776654 4999999999986432 2233433 358999999999999999
Q ss_pred CccccCCCCCcEEEccCCcCCCCcc-hhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCc--ccCChH
Q 005267 378 PPSLVNCRHLEVIDVGNNQINETFP-HWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFT--GVLPIW 454 (705)
Q Consensus 378 ~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~--~~~p~~ 454 (705)
|..|..+++|++|++++|++++.++ ..+..+++|++|++++|++.+..+..+ ..+++|+.|++++|.+. +.+|..
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~p~~ 475 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF--ALVPSLQRLMLRRVALKNVDSSPSP 475 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT--TTCTTCCEEECTTSCCBCTTCSSCT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh--hcCcccccchhccccccccccCCcc
Confidence 9999999999999999999987555 788999999999999999988776665 56899999999999987 445543
Q ss_pred hhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccc--------hhhhcCC
Q 005267 455 YLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEIS--------EVLGKLN 526 (705)
Q Consensus 455 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~l~~l~ 526 (705)
+..++.+..++........+. ......+++|++|++++|++++..+ ..+++++
T Consensus 476 -~~~l~~L~~L~Ls~N~l~~i~------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~ 536 (680)
T 1ziw_A 476 -FQPLRNLTILDLSNNNIANIN------------------DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536 (680)
T ss_dssp -TTTCTTCCEEECCSSCCCCCC------------------TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT
T ss_pred -cccCCCCCEEECCCCCCCcCC------------------hhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC
Confidence 345555555554433222111 1112337899999999999987532 2378899
Q ss_pred CCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCCCC--CCCCCCCCcc
Q 005267 527 SLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGP--QFNTFGIDSY 604 (705)
Q Consensus 527 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~--~~~~~~~~~~ 604 (705)
+|++|+|++|+++...+..|.++++|+.|||++|++++..+..|..+++|++|++++|++++..|... .+.......+
T Consensus 537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEc
Confidence 99999999999996666679999999999999999998888888999999999999999998776421 3455566667
Q ss_pred cCCCCCCCCC
Q 005267 605 SGNVGLCGFP 614 (705)
Q Consensus 605 ~~n~~lcg~~ 614 (705)
.+||..|+++
T Consensus 617 ~~N~~~c~c~ 626 (680)
T 1ziw_A 617 RFNPFDCTCE 626 (680)
T ss_dssp TTCCCCBCCC
T ss_pred cCCCcccCCc
Confidence 8899888765
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-57 Score=528.52 Aligned_cols=549 Identities=22% Similarity=0.234 Sum_probs=382.2
Q ss_pred EEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecc-cCcc-CCCCCCEEec
Q 005267 10 SLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKL-TVNS-SFPNLWALGL 87 (705)
Q Consensus 10 ~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~-~l~~L~~L~L 87 (705)
..|.++++++ .+|. -.++|++|+|++|.+++ +++..|+++++|++|+|++| ...+.+ +..+ ++++|++|+|
T Consensus 8 ~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n--~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQ--YTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEESCCCSS-CCCS---SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTT--CCCCEECTTTTSSCTTCCEEEC
T ss_pred EEEccCCCCC-CCCC---CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCC--CCccccCHHHhcCCCCCCEEEC
Confidence 3455555554 2333 23456666666666652 32233366666666666665 233333 2222 5566666666
Q ss_pred CCCCCCCC-ChhccCCCCCCEEEccCCcCCCCCchH--HHhcCCCCccEEECCCCCCCCCCC----CCCCCCcEEEccCC
Q 005267 88 SACNISEF-PDILKTQHQLDWLDLSENQIRGRIPSW--MWDIGVHTLFRLDLSRNFLTSIDH----LPWKNLEFLTLDSN 160 (705)
Q Consensus 88 ~~n~l~~l-p~~l~~l~~L~~L~Ls~n~~~~~~~~~--l~~l~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n 160 (705)
++|.+..+ |..|.++++|++|+|++|.+++.+|.. +..+ ++|++|++++|.+++..+ ..+++|++|++++|
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L--~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL--KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC--SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc--CCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 66666433 555666666666666666665544443 4444 566666666666655432 34566666666666
Q ss_pred cCCCCCCCC---C--CCCcEEEcccCCCCCCCcccccCCCC------CcEEEcccCcCCccCCcccCC----CCCCEEEc
Q 005267 161 LLQGSLPNL---P--PHMVQLSISNNSLTGEIPSSFCNLSS------IQYLYLSNNSLSGQIPQCLGN----STLENLDL 225 (705)
Q Consensus 161 ~~~~~~~~~---~--~~L~~L~l~~n~l~~~~~~~~~~l~~------L~~L~ls~n~~~~~~~~~~~~----~~L~~L~L 225 (705)
.+++..+.. + ++|+.|++++|.+.+..|..++.+++ |++|++++|.+++..+..+.. .+++.+.+
T Consensus 159 ~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred cCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 666554443 1 56666777777766666665555544 777777777766655554432 56667766
Q ss_pred CC---------CcCCcccchhccCC--CCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcE
Q 005267 226 GM---------NNFQGTIPQTYAKG--CNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSF 294 (705)
Q Consensus 226 ~~---------n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 294 (705)
+. +.+.+..+..|..+ ++|++|++++|.+.+..|..|..+++|+.|++++|.+++..|..|..+++|++
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence 52 33444444555554 67888888888888777888888888888888888888887888888888888
Q ss_pred EEccCccccCCCCccccCCCCCCeEeccCcccccccCccccc-CcccEEEcCCCcccccccccccCCCCccEEEccCCcC
Q 005267 295 LDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN-STLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRL 373 (705)
Q Consensus 295 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 373 (705)
|++++|.+++..+..|..+++|+.|++++|.+.+..+..+.. .+|+.|++++|.+++. ..+++|+.|++++|++
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKL 393 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCc
Confidence 888888888877888888888888888888887766665543 4888888888888743 2377899999999999
Q ss_pred CCCCCccccCCCCCcEEEccCCcCCCCcc-hhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCC
Q 005267 374 EGPLPPSLVNCRHLEVIDVGNNQINETFP-HWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLP 452 (705)
Q Consensus 374 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p 452 (705)
+ .+|.. ..+++.|++++|++++... ..+..+++|+.|++++|++++..+... ...+++|+.|++++|.+++..+
T Consensus 394 ~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 394 V-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-PSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp C-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS-SCSCTTCCBCEEESCCCSSSCC
T ss_pred c-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc-cccCCccccccCCCCccccccc
Confidence 8 44433 5678999999999987543 445689999999999999986544322 2457899999999999874432
Q ss_pred hHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEe
Q 005267 453 IWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLN 532 (705)
Q Consensus 453 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 532 (705)
..... .....+++|++|+|++|++++.+|..+.++++|++|+
T Consensus 469 ~~~~~--------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 510 (844)
T 3j0a_A 469 TELCW--------------------------------------DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510 (844)
T ss_dssp SCCCS--------------------------------------SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEE
T ss_pred cccch--------------------------------------hhhcCcccccEEECCCCcccccChhHccchhhhheeE
Confidence 11000 0011268899999999999999999999999999999
Q ss_pred cCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCCCCCCCCCCCCcccCCCCCCC
Q 005267 533 ISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGIDSYSGNVGLCG 612 (705)
Q Consensus 533 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg 612 (705)
|++|++++..|..+. ++|+.|||++|++++.+|..+. +|+.+++++|++.|.|+.. .|......++..+||
T Consensus 511 Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~ 581 (844)
T 3j0a_A 511 LNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAG 581 (844)
T ss_dssp EESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCC
T ss_pred CCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCccccc
Confidence 999999988777776 8999999999999999998764 7899999999999999743 232222346778888
Q ss_pred CCCCCCCCCCCC
Q 005267 613 FPLSKICRIDEA 624 (705)
Q Consensus 613 ~~~~~~c~~~~~ 624 (705)
+|....|..+..
T Consensus 582 ~~~~~~C~~p~~ 593 (844)
T 3j0a_A 582 PPADIYCVYPDS 593 (844)
T ss_dssp CGGGCCCSSCSS
T ss_pred ccccCccCCchh
Confidence 888888976544
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-54 Score=489.17 Aligned_cols=530 Identities=21% Similarity=0.217 Sum_probs=391.3
Q ss_pred CEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCEEec
Q 005267 9 SSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALGL 87 (705)
Q Consensus 9 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L 87 (705)
++++.++..++ .+|..+.. ++++|++++|.++ .+++..|+++++|++|+|++|.+ .+..+..+ ++++|++|++
T Consensus 15 ~~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L 88 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLPN--STECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVL 88 (606)
T ss_dssp TEEECTTSCCS-SCCTTSCT--TCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEEC
T ss_pred ceEECCCCCcc-cCcCCCCC--cCcEEEccCCccC-cCChhHhccCccceEEECCCCcc--ceeChhhccCccccCeeeC
Confidence 46777777766 56665543 6888888888887 45445558888888888888843 34444444 7788888888
Q ss_pred CCCCCCCC-ChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC---CCCCCCcEEEccCCcCC
Q 005267 88 SACNISEF-PDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH---LPWKNLEFLTLDSNLLQ 163 (705)
Q Consensus 88 ~~n~l~~l-p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~l~~n~~~ 163 (705)
++|.+..+ |..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++... ..+++|++|++++|.++
T Consensus 89 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 89 TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ--KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp TTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTC--TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred CCCcccccChhhhcccccccEeeccccCcccCCcchhccC--CcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence 88877444 5677778888888888887776545555555 777777777777666432 23455555555555554
Q ss_pred CCCCCC---CCCCc--EEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCC---cCCcccc
Q 005267 164 GSLPNL---PPHMV--QLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMN---NFQGTIP 235 (705)
Q Consensus 164 ~~~~~~---~~~L~--~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n---~l~~~~~ 235 (705)
+..+.. +++++ .|++++|.+++..|..+.. .+|+.|++++|.........+....++.+.+... ......+
T Consensus 167 ~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~ 245 (606)
T 3t6q_A 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245 (606)
T ss_dssp EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred ccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccCh
Confidence 433321 33344 4444444444433333322 3444444444431100001111111222222111 0111222
Q ss_pred hhccCCC--CCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCC
Q 005267 236 QTYAKGC--NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNS 313 (705)
Q Consensus 236 ~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 313 (705)
..+..+. +|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred hHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence 3333332 6889999999999887888999999999999999998 678889999999999999999998888889999
Q ss_pred CCCCeEeccCcccccccCcc-cc-cCcccEEEcCCCcccccc--cccccCCCCccEEEccCCcCCCCCCccccCCCCCcE
Q 005267 314 TSLSFLDVGNNSLSGPIPEY-LG-NSTLEVLDMRMNKFSGSL--PQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEV 389 (705)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~-~~-~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 389 (705)
++|+.|++++|.+.+.++.. +. ..+|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..|..+++|++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 99999999999988666553 33 448999999999998766 778899999999999999999888889999999999
Q ss_pred EEccCCcCCCCcc-hhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccC-ChHhhhhccccccccC
Q 005267 390 IDVGNNQINETFP-HWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVL-PIWYLNGFKAMMRRDD 467 (705)
Q Consensus 390 L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-p~~~~~~~~~l~~~~~ 467 (705)
|++++|++++..+ ..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|++++.. +..
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~------------- 469 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKT------------- 469 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSS-------------
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCCCCCccccccc-------------
Confidence 9999999987765 458889999999999999988777665 56899999999999987631 110
Q ss_pred CcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCcccc
Q 005267 468 NSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLR 547 (705)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 547 (705)
.....+++|++|++++|++++.+|..++.+++|++|+|++|++++.+|..+.
T Consensus 470 ----------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 521 (606)
T 3t6q_A 470 ----------------------------NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521 (606)
T ss_dssp ----------------------------CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred ----------------------------hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhC
Confidence 0011278999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCC
Q 005267 548 NLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG 592 (705)
Q Consensus 548 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 592 (705)
++++| .|++++|++++.+|..+..+++|++|++++|++.|.++.
T Consensus 522 ~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 522 HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp TCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred ccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 99999 999999999999999999999999999999999998874
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-53 Score=480.74 Aligned_cols=509 Identities=22% Similarity=0.246 Sum_probs=432.9
Q ss_pred CCCCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCE
Q 005267 6 TQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWA 84 (705)
Q Consensus 6 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~ 84 (705)
+++++||+++|.+++..|..|.++++|++|+|++|.++ .+++..|+++++|++|+|++|+ ..+..+..+ .+++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANP--LIFMAETALSGPKALKH 109 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC--CSEECTTTTSSCTTCCE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCc--ccccChhhhcccccccE
Confidence 46999999999999888999999999999999999998 4555556999999999999994 445555555 8999999
Q ss_pred EecCCCCCCCC-ChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC---CCCCCCc--EEEcc
Q 005267 85 LGLSACNISEF-PDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH---LPWKNLE--FLTLD 158 (705)
Q Consensus 85 L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~---~~~~~L~--~L~l~ 158 (705)
|++++|.+..+ |..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+ ..+++|+ .|+++
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT--EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCC--TTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCC--cccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 99999999877 5678999999999999999997443334445 999999999999998766 5788888 89999
Q ss_pred CCcCCCCCCCC--CCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCc--------cCCcccCCCCCCEEEcCCC
Q 005267 159 SNLLQGSLPNL--PPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSG--------QIPQCLGNSTLENLDLGMN 228 (705)
Q Consensus 159 ~n~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~--------~~~~~~~~~~L~~L~L~~n 228 (705)
+|.+++..|.. ..+|++|++++|. ..+..+..+.+++...+....+.+ .....+...+|+.|++++|
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n 264 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC
T ss_pred CCccCccChhHhhhccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC
Confidence 99999888776 5679999999986 344555556655554444332221 1111122248999999999
Q ss_pred cCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCc
Q 005267 229 NFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPE 308 (705)
Q Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 308 (705)
.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++.
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred ccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 999988889999999999999999999 7888999999999999999999988888999999999999999999866654
Q ss_pred -cccCCCCCCeEeccCccccccc--Ccccc-cCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCc-cccC
Q 005267 309 -CLGNSTSLSFLDVGNNSLSGPI--PEYLG-NSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPP-SLVN 383 (705)
Q Consensus 309 -~l~~l~~L~~L~l~~n~l~~~~--~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~ 383 (705)
.+..+++|+.|++++|.+.+.. +..+. ..+|++|++++|++.+..|..+..+++|++|++++|.+.+..+. .+..
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 5899999999999999998765 44444 45999999999999999999999999999999999999987655 4899
Q ss_pred CCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCC-CCCCCCCCCCCCccEEEccCCcCcccCChHhhhhcccc
Q 005267 384 CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGP-IGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAM 462 (705)
Q Consensus 384 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l 462 (705)
+++|++|++++|.+++..+..+..+++|++|++++|++.+. ++.......+++|++|++++|++++..|..+.
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------ 497 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT------ 497 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT------
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhc------
Confidence 99999999999999999999999999999999999999863 23323346789999999999999987664421
Q ss_pred ccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccC
Q 005267 463 MRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGI 542 (705)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 542 (705)
.+++|++|+|++|++++.+|..+.+++.| +|++++|++++.+
T Consensus 498 -------------------------------------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 498 -------------------------------------SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp -------------------------------------TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred -------------------------------------cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccC
Confidence 17899999999999999999999999999 9999999999999
Q ss_pred CccccCCCCCCeeeCCCCcCCCcCc
Q 005267 543 PSSLRNLTELESLDLSSNKLAGRIP 567 (705)
Q Consensus 543 p~~l~~l~~L~~L~Ls~N~l~~~~p 567 (705)
|..+..+++|+.|++++|++.+..+
T Consensus 540 ~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 540 PSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGHHHHHTSSEEECTTCCEECSGG
T ss_pred HhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999999999999987655
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.3e-53 Score=477.48 Aligned_cols=523 Identities=21% Similarity=0.215 Sum_probs=417.9
Q ss_pred CCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCEEe
Q 005267 8 LSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALG 86 (705)
Q Consensus 8 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~ 86 (705)
-++++.+++.++ .+|..+. +++++|+|++|.++ .++...|+++++|++|++++|.+ .+..+..+ ++++|++|+
T Consensus 13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~ 86 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLI 86 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEE
T ss_pred CCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcc--cccCHHHhhchhhcCEeE
Confidence 467888888887 5666554 78999999999998 55555568999999999999844 34444444 889999999
Q ss_pred cCCCCCCCC-ChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCC-C---CCCCCCcEEEccCCc
Q 005267 87 LSACNISEF-PDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSID-H---LPWKNLEFLTLDSNL 161 (705)
Q Consensus 87 L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~-~---~~~~~L~~L~l~~n~ 161 (705)
+++|.+..+ |..+.++++|++|++++|.+++..+..+.++ ++|++|++++|.+++.. + ..+++|++|++++|.
T Consensus 87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL--ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTC--TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCC--CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 999999666 7788999999999999999887666777777 88999999999887633 3 567888888888888
Q ss_pred CCCCCCCCC---C----CCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCc-cCCcccCC-CCCCEEEcCCCcCCc
Q 005267 162 LQGSLPNLP---P----HMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSG-QIPQCLGN-STLENLDLGMNNFQG 232 (705)
Q Consensus 162 ~~~~~~~~~---~----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~-~~~~~~~~-~~L~~L~L~~n~l~~ 232 (705)
+++..+..+ . .+.+|++++|.+++..+..+... +|++|++++|.+.+ ..|..+.. +.|+.+++..+.+.+
T Consensus 165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred ceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence 887666542 1 24578888888886555555544 88888888887763 34444444 677777665443321
Q ss_pred ------ccchhccCCC--CCCEEEC-cCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCcccc
Q 005267 233 ------TIPQTYAKGC--NLTYLRL-SGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLS 303 (705)
Q Consensus 233 ------~~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 303 (705)
..+..+..+. .++.+++ ..+.+.+..|. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l- 319 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL- 319 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-
T ss_pred CCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-
Confidence 1222222222 3556666 66778877776 889999999999999997 455 788999999999999999
Q ss_pred CCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCccccc--ccccccCCCCccEEEccCCcCCCCCCccc
Q 005267 304 GPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGS--LPQTFGKSCVLVSLKLNGNRLEGPLPPSL 381 (705)
Q Consensus 304 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 381 (705)
+.+| .+ .+++|+.|++++|...+.. ......+|+.|++++|.+++. .+..+..+++|++|++++|.+++ +|..+
T Consensus 320 ~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~ 395 (606)
T 3vq2_A 320 KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANF 395 (606)
T ss_dssp SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCC
T ss_pred cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhc
Confidence 5677 45 8999999999999665544 333455999999999999876 47888999999999999999885 55789
Q ss_pred cCCCCCcEEEccCCcCCCCcc-hhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCccc-CChHhhhhc
Q 005267 382 VNCRHLEVIDVGNNQINETFP-HWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGV-LPIWYLNGF 459 (705)
Q Consensus 382 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~p~~~~~~~ 459 (705)
..+++|+.|++++|++.+..+ ..+..+++|++|++++|++.+..+..+ ..+++|++|++++|++++. +|..+
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~---- 469 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSNVF---- 469 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCC----
T ss_pred cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh--cCCCCCCEEECCCCcCCCcchHHhh----
Confidence 999999999999999988877 678899999999999999998777665 6789999999999999873 34221
Q ss_pred cccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCC
Q 005267 460 KAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLT 539 (705)
Q Consensus 460 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 539 (705)
..+++|++|++++|++++.+|..++++++|++|+|++|+++
T Consensus 470 ---------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 470 ---------------------------------------ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp ---------------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ---------------------------------------ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence 11689999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCeeeCCCCcCCCcCcccccCCC-CCCeEecccCcccccCCCC
Q 005267 540 GGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLN-YLSVLNLSNNQLEGPIPGG 593 (705)
Q Consensus 540 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip~~ 593 (705)
+.+|..++.+++|++||+++|+++ .+|..+..++ +|++|++++|++.|.+|..
T Consensus 511 ~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 511 FLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 999999999999999999999999 6777799997 5999999999999998854
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-52 Score=485.05 Aligned_cols=519 Identities=21% Similarity=0.217 Sum_probs=430.7
Q ss_pred CEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCEEecCCCCC-CCC-ChhccCCCCCCEEE
Q 005267 33 TFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALGLSACNI-SEF-PDILKTQHQLDWLD 109 (705)
Q Consensus 33 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n~l-~~l-p~~l~~l~~L~~L~ 109 (705)
+..+.++++++ .+|. . .++|++|+|++|.+ .+..+..+ ++++|++|++++|.. ..+ |..|.++++|++|+
T Consensus 7 ~~~dcs~~~L~-~vP~-l---p~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ-V---LNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp EEEEESCCCSS-CCCS-S---CTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred eEEEccCCCCC-CCCC-C---CCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence 46788899998 7886 3 58999999999954 34444444 899999999999965 677 67899999999999
Q ss_pred ccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC-----CCCCCCcEEEccCCcCCCCCCC----CCCCCcEEEccc
Q 005267 110 LSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH-----LPWKNLEFLTLDSNLLQGSLPN----LPPHMVQLSISN 180 (705)
Q Consensus 110 Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~l~~n~~~~~~~~----~~~~L~~L~l~~ 180 (705)
|++|.+++..|..+..+ ++|++|++++|.+++..+ ..+++|++|++++|.+++..+. .+++|++|++++
T Consensus 80 Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGL--FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp CTTCCCCEECTTSSCSC--SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred CCCCcCcccCHhHccCC--cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 99999998889999888 999999999999987432 5788999999999999887653 288999999999
Q ss_pred CCCCCCCcccccCC--CCCcEEEcccCcCCccCCcccCC-------CCCCEEEcCCCcCCcccchhccCC---CCCCEEE
Q 005267 181 NSLTGEIPSSFCNL--SSIQYLYLSNNSLSGQIPQCLGN-------STLENLDLGMNNFQGTIPQTYAKG---CNLTYLR 248 (705)
Q Consensus 181 n~l~~~~~~~~~~l--~~L~~L~ls~n~~~~~~~~~~~~-------~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~ 248 (705)
|.+++..+..+..+ ++|+.|++++|.+.+..|..++. .+|++|++++|.+++..+..+... .+++.+.
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 99998888888887 89999999999998877765543 349999999999988877776543 5788888
Q ss_pred CcCC---------cCcCCCCccCCCC--CcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCC
Q 005267 249 LSGN---------HLEGPLPPSLSNC--VNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLS 317 (705)
Q Consensus 249 L~~n---------~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 317 (705)
++.+ .+.+..+..|..+ ++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..|..+++|+
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 8743 3333333445544 7899999999999988889999999999999999999988889999999999
Q ss_pred eEeccCcccccccCccccc-CcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCc
Q 005267 318 FLDVGNNSLSGPIPEYLGN-STLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQ 396 (705)
Q Consensus 318 ~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 396 (705)
.|++++|.+.+..+..+.. .+|+.|++++|.+.+..+..|..+++|++|++++|.+++. ..+++|+.|++++|+
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNK 392 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCC
T ss_pred EEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCC
Confidence 9999999998877766654 4999999999999988888899999999999999999843 337889999999999
Q ss_pred CCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccc
Q 005267 397 INETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMR 476 (705)
Q Consensus 397 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~ 476 (705)
++.. |. ...+++.|++++|++.+.... .....+++|+.|++++|++++..+....
T Consensus 393 l~~l-~~---~~~~l~~L~ls~N~l~~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------------- 447 (844)
T 3j0a_A 393 LVTL-PK---INLTANLIHLSENRLENLDIL-YFLLRVPHLQILILNQNRFSSCSGDQTP-------------------- 447 (844)
T ss_dssp CCCC-CC---CCTTCCEEECCSCCCCSSTTH-HHHTTCTTCCEEEEESCCCCCCCSSSSS--------------------
T ss_pred cccc-cc---cccccceeecccCccccCchh-hhhhcCCccceeeCCCCccccccccccc--------------------
Confidence 9854 32 257899999999998764321 1123688999999999999865432110
Q ss_pred cccccceeeEEEEecCchHHHhhhhccccEEEccCCccc-----cccchhhhcCCCCCEEecCCCcCCccCCccccCCCC
Q 005267 477 SLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQ-----GEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTE 551 (705)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 551 (705)
..+++|+.|+|++|.++ +..+..|.++++|++|+|++|++++.+|..|..+++
T Consensus 448 ----------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 448 ----------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp ----------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred ----------------------ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 01578999999999997 445567889999999999999999999999999999
Q ss_pred CCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCCCCCCCCCCCCcccCCCCCCCCCCC
Q 005267 552 LESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGIDSYSGNVGLCGFPLS 616 (705)
Q Consensus 552 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~~~ 616 (705)
|+.|+|++|++++..|..+. ++|+.|++++|++++.+|.. |..+....+.+||..|++++.
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccH
Confidence 99999999999988887776 89999999999999999853 556666678899999987653
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-51 Score=462.82 Aligned_cols=502 Identities=19% Similarity=0.203 Sum_probs=428.5
Q ss_pred CCCCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCE
Q 005267 6 TQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWA 84 (705)
Q Consensus 6 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~ 84 (705)
+++++|++++|.+++..+..|.++++|++|++++|.++ .+++..|+++++|++|+|++|. ..+..|..+ ++++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNP--IQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC--CCCCCTTSSTTCTTCCE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCc--ccccChhhcCCcccCCE
Confidence 57999999999999888889999999999999999998 5655666999999999999994 444445555 8999999
Q ss_pred EecCCCCCCCCC-hhccCCCCCCEEEccCCcCCC-CCchHHHhcCCCCccEEECCCCCCCCCCCCCCC---C----CcEE
Q 005267 85 LGLSACNISEFP-DILKTQHQLDWLDLSENQIRG-RIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWK---N----LEFL 155 (705)
Q Consensus 85 L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~---~----L~~L 155 (705)
|++++|.+..++ ..+..+++|++|++++|.+++ .+|..+.++ ++|++|++++|.+++..+..+. + +++|
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL--TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC--TTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhc--CCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence 999999997776 679999999999999999986 579999988 9999999999999988764332 2 4589
Q ss_pred EccCCcCCCCCCCC--CCCCcEEEcccCCCC-CCCcccccCCCCCcEEEcccCcCCcc---------CCcccCCCCCCEE
Q 005267 156 TLDSNLLQGSLPNL--PPHMVQLSISNNSLT-GEIPSSFCNLSSIQYLYLSNNSLSGQ---------IPQCLGNSTLENL 223 (705)
Q Consensus 156 ~l~~n~~~~~~~~~--~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~~~~~---------~~~~~~~~~L~~L 223 (705)
++++|.+++..+.. ..+|++|++++|.++ +..|..+.+++.|+.+++..+.+.+. .+..+....++.+
T Consensus 187 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 266 (606)
T 3vq2_A 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred eccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence 99999999776655 348999999999987 46778899999999999876554321 1111222467788
Q ss_pred Ec-CCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccc
Q 005267 224 DL-GMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNL 302 (705)
Q Consensus 224 ~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 302 (705)
++ ..+.+.+..|. +..+++|++|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|..
T Consensus 267 ~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 267 RLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp EECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS
T ss_pred eccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcC
Confidence 88 77788888887 999999999999999997 466 889999999999999999 5778 45 999999999999965
Q ss_pred cCCCCccccCCCCCCeEeccCccccccc--Ccccc-cCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCC-
Q 005267 303 SGPIPECLGNSTSLSFLDVGNNSLSGPI--PEYLG-NSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLP- 378 (705)
Q Consensus 303 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~- 378 (705)
.+.. .+..+++|+.|++++|.+++.. +..+. ..+|+.|++++|.+++ +|..+..+++|++|++++|.+.+..|
T Consensus 341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred ccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccCh
Confidence 5443 6779999999999999998763 44443 4599999999999985 56889999999999999999998877
Q ss_pred ccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCC-CCCCCCCCCCCCccEEEccCCcCcccCChHhhh
Q 005267 379 PSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGP-IGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLN 457 (705)
Q Consensus 379 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~ 457 (705)
..+..+++|++|++++|++++..|..+..+++|++|++++|++.+. .+..+ ..+++|+.|++++|++++..|..+.
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~- 494 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGVFD- 494 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTT-
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh--ccCCCCCEEECCCCcCCccChhhhc-
Confidence 6899999999999999999999999999999999999999999874 55554 6789999999999999987664321
Q ss_pred hccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCc
Q 005267 458 GFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNN 537 (705)
Q Consensus 458 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 537 (705)
.+++|++|+|++|++++.+|..++++++|++|+|++|+
T Consensus 495 ------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 495 ------------------------------------------TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp ------------------------------------------TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred ------------------------------------------ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 17899999999999999999999999999999999999
Q ss_pred CCccCCccccCCC-CCCeeeCCCCcCCCcCc
Q 005267 538 LTGGIPSSLRNLT-ELESLDLSSNKLAGRIP 567 (705)
Q Consensus 538 l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p 567 (705)
++ .+|..+..++ +|+.|++++|++.+..+
T Consensus 533 l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 533 IE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred Cc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99 6777799987 69999999999987555
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-48 Score=434.10 Aligned_cols=511 Identities=18% Similarity=0.172 Sum_probs=362.7
Q ss_pred CCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCEEe
Q 005267 8 LSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALG 86 (705)
Q Consensus 8 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~ 86 (705)
.+.++-++.+++ .+|..+. +++++|++++|.++ .++...|.++++|++|+|++|++ .+..+..+ ++++|++|+
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~ 82 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLI 82 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEe
Confidence 345666666655 4555443 46778888888777 45544557788888888887743 23223333 677888888
Q ss_pred cCCCCCCCCC-hhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCC-CCCCCCCcEEEccCCcCCC
Q 005267 87 LSACNISEFP-DILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSID-HLPWKNLEFLTLDSNLLQG 164 (705)
Q Consensus 87 L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~-~~~~~~L~~L~l~~n~~~~ 164 (705)
+++|.+..++ ..|..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++.. +..+.
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l--~~L~~L~L~~n~l~~~~lp~~~~-------------- 146 (570)
T 2z63_A 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL--KTLKELNVAHNLIQSFKLPEYFS-------------- 146 (570)
T ss_dssp CTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTC--TTCCEEECCSSCCCCCCCCGGGG--------------
T ss_pred CcCCcCCccCHhhhcCccccccccccccccccCCCcccccc--ccccEEecCCCccceecChhhhc--------------
Confidence 8888776555 567778888888888887774433344444 66666666666555421 11000
Q ss_pred CCCCCCCCCcEEEcccCCCCCCCcccccCCCCC----cEEEcccCcCCccCCcccCCCCCCEEEcCCCcCC-cccchhcc
Q 005267 165 SLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSI----QYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQ-GTIPQTYA 239 (705)
Q Consensus 165 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~ 239 (705)
.+++|++|++++|.+++..+..++.+++| +.|++++|.+.+..+..+...+|+.|++++|... ...+..+.
T Consensus 147 ----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 222 (570)
T 2z63_A 147 ----NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222 (570)
T ss_dssp ----GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHH
T ss_pred ----ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhc
Confidence 03445555555555555555556666666 6677777777666666665566777777766432 23455566
Q ss_pred CCCCCCEEECcCCcC------cCCCCccCCCCC--cCcEEEccCC-cCCCCCCccccCCCCCcEEEccCccccCCCCccc
Q 005267 240 KGCNLTYLRLSGNHL------EGPLPPSLSNCV--NLQVLDVGNN-NLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECL 310 (705)
Q Consensus 240 ~l~~L~~L~L~~n~l------~~~~~~~~~~l~--~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 310 (705)
.++.++.+.+....+ .......+..++ .++.++++++ .+.+..|..+..+++|++|++++|.++ .+|..+
T Consensus 223 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~ 301 (570)
T 2z63_A 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFS 301 (570)
T ss_dssp TTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCC
T ss_pred CccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhh
Confidence 666666555443221 111122233332 3566677766 666777778888888888888888887 466777
Q ss_pred cCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCC--CccccCCCCCc
Q 005267 311 GNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPL--PPSLVNCRHLE 388 (705)
Q Consensus 311 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~l~~L~ 388 (705)
..+ +|+.|++++|.+. .+|. ....+|+.|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|+
T Consensus 302 ~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 376 (570)
T 2z63_A 302 YNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376 (570)
T ss_dssp SCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCC
T ss_pred ccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccC
Confidence 777 8888888888877 4444 2345788888888887766554 67788999999999887653 66788889999
Q ss_pred EEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCC
Q 005267 389 VIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDN 468 (705)
Q Consensus 389 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~ 468 (705)
+|++++|++.+..+. +..+++|+.|++++|.+.+..+.. ....+++|++|++++|.+.+..|..+.
T Consensus 377 ~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~------------ 442 (570)
T 2z63_A 377 YLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRVAFNGIFN------------ 442 (570)
T ss_dssp EEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC-TTTTCTTCCEEECTTSCCEECCTTTTT------------
T ss_pred EEECCCCcccccccc-ccccCCCCEEEccCCccccccchh-hhhcCCCCCEEeCcCCcccccchhhhh------------
Confidence 999999988776655 888999999999999988765522 125688999999999998876654321
Q ss_pred cccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccc-cccchhhhcCCCCCEEecCCCcCCccCCcccc
Q 005267 469 SIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQ-GEISEVLGKLNSLKSLNISHNNLTGGIPSSLR 547 (705)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 547 (705)
.+++|++|++++|.++ +.+|..++.+++|++|+|++|++++..|..+.
T Consensus 443 -------------------------------~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 443 -------------------------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp -------------------------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred -------------------------------cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 1688999999999998 57889999999999999999999999899999
Q ss_pred CCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCCCCC
Q 005267 548 NLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQ 595 (705)
Q Consensus 548 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~ 595 (705)
.+++|++|++++|++++..|..+..+++|++|++++|+++|.+|....
T Consensus 492 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 999999999999999999889999999999999999999999997543
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.6e-46 Score=416.19 Aligned_cols=476 Identities=20% Similarity=0.212 Sum_probs=301.0
Q ss_pred EEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCccCCCCCCEEecCC
Q 005267 10 SLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSA 89 (705)
Q Consensus 10 ~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 89 (705)
..|.+++.++ .+|..+. ++|++|++++|.+++ +++..|+++++|++|++++|
T Consensus 9 ~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n------------------------ 60 (549)
T 2z81_A 9 VCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSS------------------------ 60 (549)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTS------------------------
T ss_pred eEECCCCccc-cccccCC--CCccEEECcCCccCc-cChhhhhcCCcccEEECCCC------------------------
Confidence 3455555554 3444333 456666666666552 32233355666666666655
Q ss_pred CCCCCCC-hhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC----CCCCCCcEEEccCCcCCC
Q 005267 90 CNISEFP-DILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH----LPWKNLEFLTLDSNLLQG 164 (705)
Q Consensus 90 n~l~~lp-~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~~ 164 (705)
.+..++ ..+..+++|++|++++|.+++..|..+..+ ++|++|++++|.+++... ..+++|++|++++|.+.+
T Consensus 61 -~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~ 137 (549)
T 2z81_A 61 -RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL--SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137 (549)
T ss_dssp -CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC--TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred -CcCccChhhccccccCCEEECCCCccCccCHHHhccC--CCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc
Confidence 332222 345555555555555555554444445544 555555555555543211 233344444444333222
Q ss_pred CCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCC
Q 005267 165 SLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCN 243 (705)
Q Consensus 165 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~ 243 (705)
. ..+..|+++++|++|++++|.+++..|..++. ++|++|+++.|.+.......+..+++
T Consensus 138 ~--------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 197 (549)
T 2z81_A 138 E--------------------IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197 (549)
T ss_dssp E--------------------ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTT
T ss_pred c--------------------cCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhccc
Confidence 1 12234555555555555555555545544444 55555555555554322223345666
Q ss_pred CCEEECcCCcCcCCC--C-ccCCCCCcCcEEEccCCcCCCCCC----ccccCCCCCcEEEccCccccCCC------Cccc
Q 005267 244 LTYLRLSGNHLEGPL--P-PSLSNCVNLQVLDVGNNNLSGPIP----ECLGNSTRLSFLDVRNNNLSGPI------PECL 310 (705)
Q Consensus 244 L~~L~L~~n~l~~~~--~-~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~------~~~l 310 (705)
|++|++++|++++.. | .....+++|+.|++++|.+++..+ ..+..+++|+.+++++|.+.+.. ...+
T Consensus 198 L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 277 (549)
T 2z81_A 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277 (549)
T ss_dssp BSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCC
T ss_pred ccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhh
Confidence 666666666665421 1 122345666667766666654322 22344566777777776665421 1234
Q ss_pred cCCCCCCeEeccCccccccc-----Ccccc-cCcccEEEcCCCcccccccccc-cCCCCccEEEccCCcCCCCCCc---c
Q 005267 311 GNSTSLSFLDVGNNSLSGPI-----PEYLG-NSTLEVLDMRMNKFSGSLPQTF-GKSCVLVSLKLNGNRLEGPLPP---S 380 (705)
Q Consensus 311 ~~l~~L~~L~l~~n~l~~~~-----~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~---~ 380 (705)
..+++|+.|++.++.+.... +.... ..+|+.|++++|.+. .+|..+ ..+++|++|++++|++++.+|. .
T Consensus 278 ~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 356 (549)
T 2z81_A 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356 (549)
T ss_dssp CCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC
T ss_pred hhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhh
Confidence 56677777777777654311 11111 237888888888887 455544 5788899999999998876543 3
Q ss_pred ccCCCCCcEEEccCCcCCCCcc--hhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhh
Q 005267 381 LVNCRHLEVIDVGNNQINETFP--HWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNG 458 (705)
Q Consensus 381 l~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~ 458 (705)
+..+++|++|++++|++++..+ ..+..+++|++|++++|++++ +|... ..+++|++|++++|++++. |..
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~--~~~~~L~~L~Ls~N~l~~l-~~~---- 428 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSC--QWPEKMRFLNLSSTGIRVV-KTC---- 428 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCC--CCCTTCCEEECTTSCCSCC-CTT----
T ss_pred hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhh--cccccccEEECCCCCcccc-cch----
Confidence 6788899999999999987643 557889999999999999874 44433 4578999999999988642 211
Q ss_pred ccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcC
Q 005267 459 FKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNL 538 (705)
Q Consensus 459 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 538 (705)
.+++|++||+++|++++.+ +.+++|++|+|++|++
T Consensus 429 -----------------------------------------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 429 -----------------------------------------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKL 463 (549)
T ss_dssp -----------------------------------------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCC
T ss_pred -----------------------------------------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCcc
Confidence 1467899999999998754 5789999999999999
Q ss_pred CccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCC
Q 005267 539 TGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG 592 (705)
Q Consensus 539 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 592 (705)
+ .+|. ...+++|+.|||++|++++.+|..+..+++|++|++++|++.|.+|.
T Consensus 464 ~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 464 K-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp S-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred C-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 9 6676 46799999999999999999999999999999999999999999984
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-45 Score=411.33 Aligned_cols=481 Identities=20% Similarity=0.186 Sum_probs=363.2
Q ss_pred CCCCEEecCCCCCCCCC-hhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC---CCCCCCcEE
Q 005267 80 PNLWALGLSACNISEFP-DILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH---LPWKNLEFL 155 (705)
Q Consensus 80 ~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L 155 (705)
+++++|++++|.+..++ ..|..+++|++|++++|++++..+..+..+ ++|++|++++|.+++..+ ..+++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--SHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTC--TTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCc--hhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 46888888888886654 467788888888888888876656666666 788888888888777654 456777777
Q ss_pred EccCCcCCCCCCC---CCCCCcEEEcccCCCCC-CCcccccCCCCCcEEEcccCcCCccCCcccCC-CCC----CEEEcC
Q 005267 156 TLDSNLLQGSLPN---LPPHMVQLSISNNSLTG-EIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STL----ENLDLG 226 (705)
Q Consensus 156 ~l~~n~~~~~~~~---~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L----~~L~L~ 226 (705)
++++|.+++..+. .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+..++. .+| +.|+++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 7777777654432 16677777777777765 35677777777777777777776655555544 455 677777
Q ss_pred CCcCCcccchhccCCCCCCEEECcCCcCcC-CCCccCCCCCcCcEEEccCCcCC------CCCCccccCCC--CCcEEEc
Q 005267 227 MNNFQGTIPQTYAKGCNLTYLRLSGNHLEG-PLPPSLSNCVNLQVLDVGNNNLS------GPIPECLGNST--RLSFLDV 297 (705)
Q Consensus 227 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~--~L~~L~L 297 (705)
+|.+.+..+..+... +|++|++++|.... .++..+..+++++...+....+. ......+..++ .++.+++
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 777776666666554 67777777664321 23444555666665554432211 11122233332 3567777
Q ss_pred cCc-cccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCC
Q 005267 298 RNN-NLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGP 376 (705)
Q Consensus 298 ~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 376 (705)
+++ .+.+..+..+..+++|+.|++++|.+. .+|..+...+|+.|++++|.+. .+|. ..+++|+.|++++|.+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCB
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCccc-ccCc--ccccccCEEeCcCCccccc
Confidence 777 777788899999999999999999998 4666555559999999999998 4454 4678999999999999876
Q ss_pred CCccccCCCCCcEEEccCCcCCCCc--chhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChH
Q 005267 377 LPPSLVNCRHLEVIDVGNNQINETF--PHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIW 454 (705)
Q Consensus 377 ~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~ 454 (705)
.+. ..+++|++|++++|++++.. +..+..+++|+.|++++|++.+..+. ...+++|+.|++++|.+.+..|..
T Consensus 341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTTSEEESCTTSC
T ss_pred ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc---ccccCCCCEEEccCCccccccchh
Confidence 654 78999999999999998765 78899999999999999998876544 256899999999999998765522
Q ss_pred hhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecC
Q 005267 455 YLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNIS 534 (705)
Q Consensus 455 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 534 (705)
.+. .+++|++|++++|.+.+.+|..++++++|++|+++
T Consensus 416 ~~~------------------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 453 (570)
T 2z63_A 416 VFL------------------------------------------SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453 (570)
T ss_dssp TTT------------------------------------------TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred hhh------------------------------------------cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECc
Confidence 211 16889999999999999999999999999999999
Q ss_pred CCcCC-ccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCCC-CCCCCCCCCcccCCCCCCC
Q 005267 535 HNNLT-GGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG-PQFNTFGIDSYSGNVGLCG 612 (705)
Q Consensus 535 ~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~~lcg 612 (705)
+|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|.. ..+.......+.+|+.-|.
T Consensus 454 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 99998 678999999999999999999999999999999999999999999999887753 3444555555667776665
Q ss_pred CC
Q 005267 613 FP 614 (705)
Q Consensus 613 ~~ 614 (705)
+|
T Consensus 534 ~~ 535 (570)
T 2z63_A 534 CP 535 (570)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.1e-47 Score=426.40 Aligned_cols=449 Identities=19% Similarity=0.280 Sum_probs=349.0
Q ss_pred CCCCEEecCCCCC-CCCChhccCCCCCCEEEccCCcC------CC------CCchHHHhcCCCCccEEECCCCCCCCCCC
Q 005267 80 PNLWALGLSACNI-SEFPDILKTQHQLDWLDLSENQI------RG------RIPSWMWDIGVHTLFRLDLSRNFLTSIDH 146 (705)
Q Consensus 80 ~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~Ls~n~~------~~------~~~~~l~~l~~~~L~~L~ls~n~l~~~~~ 146 (705)
.+++.|+|+++.+ +.+|..++++++|++|+|++|.+ .+ .+|... + ..++ ++++.+.+.+..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~--~~l~-l~l~~~~l~~~~~ 155 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--K--QKMR-MHYQKTFVDYDPR 155 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--H--HHHH-THHHHHHTCCCGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--H--HHHH-hhHHHhhhccCch
Confidence 4677777777777 67777777777777777777754 22 334333 2 4455 5666665555444
Q ss_pred CCCC----CCcEEEccCCcCCCCCCCCCCCCcEEEc--ccCCCCCCCcccccCCCCCcEEEcccCcCCcc----------
Q 005267 147 LPWK----NLEFLTLDSNLLQGSLPNLPPHMVQLSI--SNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQ---------- 210 (705)
Q Consensus 147 ~~~~----~L~~L~l~~n~~~~~~~~~~~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~---------- 210 (705)
..+. .+..+++....+.. .....++.+.+ .+|.+++ +|..++++++|++|++++|.+++.
T Consensus 156 ~~~~~~~~~l~~~~l~~~~~~~---~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 231 (636)
T 4eco_A 156 EDFSDLIKDCINSDPQQKSIKK---SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN 231 (636)
T ss_dssp GGSCHHHHHHHHHCTTSCCCCC---CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred hhHHHHHHHHhhcCcccccccc---ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccc
Confidence 2222 11111222111110 00112222222 2577887 888999999999999999999885
Q ss_pred -------CCcccC--C-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCc-CcC-CCCccCCCC------CcCcEEE
Q 005267 211 -------IPQCLG--N-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNH-LEG-PLPPSLSNC------VNLQVLD 272 (705)
Q Consensus 211 -------~~~~~~--~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~ 272 (705)
+|..++ . ++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|+
T Consensus 232 ~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred cchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence 888877 4 999999999999999999999999999999999998 887 788877776 8999999
Q ss_pred ccCCcCCCCCCc--cccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCccccc-Cc-ccEEEcCCCc
Q 005267 273 VGNNNLSGPIPE--CLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN-ST-LEVLDMRMNK 348 (705)
Q Consensus 273 L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~-L~~L~l~~n~ 348 (705)
+++|.++ .+|. .++++++|++|++++|.+++.+| .+..+++|+.|++++|.++ .+|..+.. .+ |+.|++++|.
T Consensus 312 L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 312 IGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp CCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC
T ss_pred CCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc
Confidence 9999999 7888 89999999999999999998888 8899999999999999998 56655543 46 9999999999
Q ss_pred ccccccccccCCC--CccEEEccCCcCCCCCCcccc-------CCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCC
Q 005267 349 FSGSLPQTFGKSC--VLVSLKLNGNRLEGPLPPSLV-------NCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 419 (705)
Q Consensus 349 l~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 419 (705)
++ .+|..+.... +|++|++++|.+++.+|..+. .+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence 98 7787777654 899999999999998888888 7889999999999999766667778999999999999
Q ss_pred cCcCCCCCCCCC------CCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCc
Q 005267 420 RFCGPIGDTKTR------VPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGN 493 (705)
Q Consensus 420 ~l~~~~~~~~~~------~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (705)
+++ .+|..... ..+++|+.|++++|+++ .+|..+..
T Consensus 468 ~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------------------------ 509 (636)
T 4eco_A 468 MLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA------------------------------------ 509 (636)
T ss_dssp CCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST------------------------------------
T ss_pred CCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh------------------------------------
Confidence 998 44443211 11238999999999998 56644210
Q ss_pred hHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEec------CCCcCCccCCccccCCCCCCeeeCCCCcCCCcCc
Q 005267 494 DIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNI------SHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 567 (705)
Q Consensus 494 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 567 (705)
..+++|+.|+|++|++++ +|..+..+++|++|+| ++|++.+.+|..++.+++|++|+|++|++ +.+|
T Consensus 510 -----~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 510 -----TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp -----TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred -----ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 016889999999999998 8888999999999999 56788889999999999999999999999 5888
Q ss_pred ccccCCCCCCeEecccCcccc
Q 005267 568 TQLASLNYLSVLNLSNNQLEG 588 (705)
Q Consensus 568 ~~l~~l~~L~~L~ls~N~l~g 588 (705)
..+. ++|++|++++|++..
T Consensus 583 ~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 583 EKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp SCCC--TTCCEEECCSCTTCE
T ss_pred HhHh--CcCCEEECcCCCCcc
Confidence 8765 799999999998875
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.7e-45 Score=406.86 Aligned_cols=464 Identities=17% Similarity=0.164 Sum_probs=312.7
Q ss_pred CCCCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCE
Q 005267 6 TQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWA 84 (705)
Q Consensus 6 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~ 84 (705)
++|++|++++|.+++..|..|.++++|++|++++|.++ .+++..|+++++|++|++++|.+ .+..+..+ .+++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCC--CSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCcc--CccCHHHhccCCCCcE
Confidence 58999999999999888899999999999999999999 55555669999999999999944 33333323 7889999
Q ss_pred EecCCCCCC--CCChhccCCCCCCEEEccCCcCCCCCc-hHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEccCCc
Q 005267 85 LGLSACNIS--EFPDILKTQHQLDWLDLSENQIRGRIP-SWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNL 161 (705)
Q Consensus 85 L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~ 161 (705)
|++++|.+. .+|..+..+++|++|++++|.+.+.+| ..+..+ ++|++|++++|.+++..+..+.+
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~---------- 170 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL--TSLNELEIKALSLRNYQSQSLKS---------- 170 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC--CEEEEEEEEETTCCEECTTTTTT----------
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc--cccCeeeccCCcccccChhhhhc----------
Confidence 999999886 446778888889999998887544444 345554 66666666666555443322211
Q ss_pred CCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccC--Cccc--CCCCCCEEEcCCCcCCcccch-
Q 005267 162 LQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQI--PQCL--GNSTLENLDLGMNNFQGTIPQ- 236 (705)
Q Consensus 162 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~--~~~~--~~~~L~~L~L~~n~l~~~~~~- 236 (705)
+++|++|+++.|.+....+..+..+++|++|++++|.+++.. +..+ ..++|+.|++++|.+++..+.
T Consensus 171 --------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 171 --------IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp --------CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred --------cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence 345667777777766333333456888999999998887642 1112 227788888888877654443
Q ss_pred ---hccCCCCCCEEECcCCcCcCCC------CccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCC
Q 005267 237 ---TYAKGCNLTYLRLSGNHLEGPL------PPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP 307 (705)
Q Consensus 237 ---~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 307 (705)
.+..+++|+.+++++|.+.+.. ...+..+++|+.|++.++.+.... .+.. .+
T Consensus 243 l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~-----------------l~ 303 (549)
T 2z81_A 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY--LFYD-----------------LS 303 (549)
T ss_dssp HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG--GSCC-----------------CC
T ss_pred HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh--hccc-----------------ch
Confidence 3355677777777777765421 122344555566665555443210 0000 11
Q ss_pred ccccCCCCCCeEeccCcccccccCccc--ccCcccEEEcCCCccccccc---ccccCCCCccEEEccCCcCCCCCC--cc
Q 005267 308 ECLGNSTSLSFLDVGNNSLSGPIPEYL--GNSTLEVLDMRMNKFSGSLP---QTFGKSCVLVSLKLNGNRLEGPLP--PS 380 (705)
Q Consensus 308 ~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~--~~ 380 (705)
..+...++|+.|++++|.+. .+|..+ ...+|++|++++|++++..| ..++.+++|++|++++|++++..+ ..
T Consensus 304 ~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 382 (549)
T 2z81_A 304 TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382 (549)
T ss_dssp HHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH
T ss_pred hhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhh
Confidence 11222344555555555544 333322 13355555555555555442 235566677777777777764322 34
Q ss_pred ccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhcc
Q 005267 381 LVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFK 460 (705)
Q Consensus 381 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~ 460 (705)
+..+++|++|++++|++++ +|..+..+++|++|++++|++.+... ...++|++|++++|++++..+
T Consensus 383 ~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l~~-----~~~~~L~~L~Ls~N~l~~~~~-------- 448 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKT-----CIPQTLEVLDVSNNNLDSFSL-------- 448 (549)
T ss_dssp GGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCCCT-----TSCTTCSEEECCSSCCSCCCC--------
T ss_pred hhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCcccccc-----hhcCCceEEECCCCChhhhcc--------
Confidence 6677777777777777763 55566677777778887777754321 113578888888888875321
Q ss_pred ccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCc
Q 005267 461 AMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTG 540 (705)
Q Consensus 461 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 540 (705)
.+++|++|+|++|+++ .+|. ...+++|++|+|++|++++
T Consensus 449 ---------------------------------------~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 449 ---------------------------------------FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp ---------------------------------------CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred ---------------------------------------cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence 0678899999999998 4555 5679999999999999999
Q ss_pred cCCccccCCCCCCeeeCCCCcCCCcCc
Q 005267 541 GIPSSLRNLTELESLDLSSNKLAGRIP 567 (705)
Q Consensus 541 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p 567 (705)
.+|..+..+++|+.|++++|++.+..|
T Consensus 488 ~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 488 VPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999999999999999999998877
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-46 Score=421.19 Aligned_cols=450 Identities=19% Similarity=0.265 Sum_probs=370.4
Q ss_pred CCCCEEEccCCCCcceecccCcc-CCCCCCEEecCCCCC-------C------CCChhccCCCCCCEEEccCCcCCCCCc
Q 005267 55 KNLKYLILSNISLSVSTKLTVNS-SFPNLWALGLSACNI-------S------EFPDILKTQHQLDWLDLSENQIRGRIP 120 (705)
Q Consensus 55 ~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n~l-------~------~lp~~l~~l~~L~~L~Ls~n~~~~~~~ 120 (705)
.+++.|+|+++ ...|.+|..+ ++++|++|+|++|.+ + .+|... +..|+ ++++++.+.+..|
T Consensus 81 ~~V~~L~L~~~--~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~ 155 (636)
T 4eco_A 81 GRVTGLSLEGF--GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPR 155 (636)
T ss_dssp CCEEEEECTTS--CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGG
T ss_pred CCEEEEEecCc--ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCch
Confidence 58999999999 6678888777 999999999999965 2 455444 45677 8888888888777
Q ss_pred hHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEcc--CCcCCCCCCCC---CCCCcEEEcccCCCCCC---------
Q 005267 121 SWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLD--SNLLQGSLPNL---PPHMVQLSISNNSLTGE--------- 186 (705)
Q Consensus 121 ~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~--~n~~~~~~~~~---~~~L~~L~l~~n~l~~~--------- 186 (705)
..+... +..+..+++....+... ....++.+.+. .|.+++ +|.. +++|++|++++|.+++.
T Consensus 156 ~~~~~~-~~~l~~~~l~~~~~~~~---~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 156 EDFSDL-IKDCINSDPQQKSIKKS---SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp GGSCHH-HHHHHHHCTTSCCCCCC---CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred hhHHHH-HHHHhhcCccccccccc---cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 665432 13333344443332221 12223333333 467777 6664 78899999999999975
Q ss_pred --------Cccccc--CCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCc-CCc-ccchhccCC------CCCCEE
Q 005267 187 --------IPSSFC--NLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNN-FQG-TIPQTYAKG------CNLTYL 247 (705)
Q Consensus 187 --------~~~~~~--~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L 247 (705)
+|..++ ++++|++|++++|.+.+.+|..++. ++|++|++++|+ +++ .+|..++.+ ++|++|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 899999 9999999999999999999998877 999999999998 998 899888876 999999
Q ss_pred ECcCCcCcCCCCc--cCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCC-CCeEeccCc
Q 005267 248 RLSGNHLEGPLPP--SLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTS-LSFLDVGNN 324 (705)
Q Consensus 248 ~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n 324 (705)
++++|+++ .+|. .++++++|++|++++|.++|.+| .++.+++|++|++++|.++ .+|..+..+++ |+.|++++|
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence 99999999 7888 89999999999999999998899 8999999999999999999 78888999999 999999999
Q ss_pred ccccccCcccccC---cccEEEcCCCccccccccccc-------CCCCccEEEccCCcCCCCCCccccCCCCCcEEEccC
Q 005267 325 SLSGPIPEYLGNS---TLEVLDMRMNKFSGSLPQTFG-------KSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGN 394 (705)
Q Consensus 325 ~l~~~~~~~~~~~---~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 394 (705)
.++ .+|..+... +|+.|++++|.+++..|..+. .+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 998 677766543 799999999999999998888 788999999999999965555677899999999999
Q ss_pred CcCCCCcchhhhCCC-------CCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccC
Q 005267 395 NQINETFPHWLDVLP-------ELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDD 467 (705)
Q Consensus 395 n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~ 467 (705)
|+++...+..+.... +|+.|++++|+++ .+|.......+++|+.|++++|++++ +|..+..
T Consensus 467 N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~---------- 534 (636)
T 4eco_A 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN---------- 534 (636)
T ss_dssp SCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG----------
T ss_pred CCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhc----------
Confidence 999955444444433 9999999999998 45554422378999999999999997 6654321
Q ss_pred CcccccccccccccceeeEEEEecCchHHHhhhhccccEEEc------cCCccccccchhhhcCCCCCEEecCCCcCCcc
Q 005267 468 NSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDL------SSNRFQGEISEVLGKLNSLKSLNISHNNLTGG 541 (705)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 541 (705)
+++|++|+| ++|++.+.+|..++.+++|++|+|++|++ +.
T Consensus 535 ---------------------------------l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ 580 (636)
T 4eco_A 535 ---------------------------------SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK 580 (636)
T ss_dssp ---------------------------------CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred ---------------------------------CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc
Confidence 788999999 56888999999999999999999999999 57
Q ss_pred CCccccCCCCCCeeeCCCCcCCCcC
Q 005267 542 IPSSLRNLTELESLDLSSNKLAGRI 566 (705)
Q Consensus 542 ~p~~l~~l~~L~~L~Ls~N~l~~~~ 566 (705)
+|..+. ++|+.|||++|++....
T Consensus 581 ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 581 VNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCSCCC--TTCCEEECCSCTTCEEE
T ss_pred cCHhHh--CcCCEEECcCCCCcccc
Confidence 888776 89999999999887433
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.4e-46 Score=410.49 Aligned_cols=452 Identities=21% Similarity=0.204 Sum_probs=275.8
Q ss_pred CEEEccCCCCcceecccCccCCCCCCEEecCCCCCCCCC-hhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEEC
Q 005267 58 KYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFP-DILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDL 136 (705)
Q Consensus 58 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~l 136 (705)
++|++++|.+. .+|.... ++|++|++++|.+..++ ..+..+++|++|++++|++++..|..+..+ ++|++|++
T Consensus 3 ~~l~ls~n~l~---~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLI---HVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN--QELEYLDL 76 (520)
T ss_dssp CEEECTTSCCS---SCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC--TTCCEEEC
T ss_pred ceEecCCCCcc---ccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcc--cCCCEEec
Confidence 45666766443 3443322 56677777777665554 456666677777777776665556666655 66666666
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCcEEEcccCCCCC-CCcccccCCCCCcEEEcccCcCCccCCccc
Q 005267 137 SRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTG-EIPSSFCNLSSIQYLYLSNNSLSGQIPQCL 215 (705)
Q Consensus 137 s~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~ 215 (705)
++|.++.++...++ +|++|++++|.+++ .+|..|+++++|++|++++|.+.+. .+
T Consensus 77 s~N~l~~lp~~~l~---------------------~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~ 132 (520)
T 2z7x_B 77 SHNKLVKISCHPTV---------------------NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SV 132 (520)
T ss_dssp CSSCCCEEECCCCC---------------------CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GG
T ss_pred CCCceeecCccccC---------------------CccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hc
Confidence 66666554433444 45555555555544 2455555666666666666555431 11
Q ss_pred CC-CCC--CEEEcCCCcC--CcccchhccCCC-CCCEEECcCCcCcCCCC-ccCCCCCcCcEEEccCCc-------CCCC
Q 005267 216 GN-STL--ENLDLGMNNF--QGTIPQTYAKGC-NLTYLRLSGNHLEGPLP-PSLSNCVNLQVLDVGNNN-------LSGP 281 (705)
Q Consensus 216 ~~-~~L--~~L~L~~n~l--~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-------l~~~ 281 (705)
.. ++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.++ ..+..+++|+.+++++|. +.+.
T Consensus 133 ~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 212 (520)
T 2z7x_B 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212 (520)
T ss_dssp GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH
T ss_pred cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecc
Confidence 11 444 6666666655 455555555443 23344555555554333 244556666666666664 3333
Q ss_pred CCccccCCCCCcEEEccCccccCCCCccc---cCCCCCCeEeccCcccccccCccc-----cc-CcccEEEcCCCccccc
Q 005267 282 IPECLGNSTRLSFLDVRNNNLSGPIPECL---GNSTSLSFLDVGNNSLSGPIPEYL-----GN-STLEVLDMRMNKFSGS 352 (705)
Q Consensus 282 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~~~~~~~-----~~-~~L~~L~l~~n~l~~~ 352 (705)
+| .++.+++|+.|++++|.+++..+..+ ...++|+.|++++|.+.+.+|..+ +. ..|+.+++++|.+ .
T Consensus 213 ~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~ 289 (520)
T 2z7x_B 213 LA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--G 289 (520)
T ss_dssp HH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--C
T ss_pred hh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--e
Confidence 33 45566666666666665553221111 113456666666666665555544 22 2566666666665 2
Q ss_pred cc-ccccCC---CCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcC--CCC
Q 005267 353 LP-QTFGKS---CVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCG--PIG 426 (705)
Q Consensus 353 ~~-~~~~~~---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~ 426 (705)
+| ..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|++++..|.++..+++|++|++++|++.+ .+|
T Consensus 290 ~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp SCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred cchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch
Confidence 33 222222 45666666666665321 12466667777777777766666666667777777777776654 222
Q ss_pred CCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccE
Q 005267 427 DTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFAT 506 (705)
Q Consensus 427 ~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 506 (705)
..+ ..+++|++|++++|++++.+|...+. .+++|++
T Consensus 368 ~~~--~~l~~L~~L~Ls~N~l~~~l~~~~~~------------------------------------------~l~~L~~ 403 (520)
T 2z7x_B 368 EMT--TQMKSLQQLDISQNSVSYDEKKGDCS------------------------------------------WTKSLLS 403 (520)
T ss_dssp HHH--TTCTTCCEEECCSSCCBCCGGGCSCC------------------------------------------CCTTCCE
T ss_pred HHH--hhCCCCCEEECCCCcCCcccccchhc------------------------------------------cCccCCE
Confidence 212 34667777777777776644432111 1577888
Q ss_pred EEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcc-cccCCCCCCeEecccCc
Q 005267 507 IDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPT-QLASLNYLSVLNLSNNQ 585 (705)
Q Consensus 507 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~ 585 (705)
|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|++|++++|++++ +|. .+..+++|++|++++|+
T Consensus 404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp EECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCC
Confidence 88999988877776554 78999999999999 788888899999999999999995 555 48999999999999999
Q ss_pred ccccCCC
Q 005267 586 LEGPIPG 592 (705)
Q Consensus 586 l~g~ip~ 592 (705)
++|.++.
T Consensus 480 ~~c~c~~ 486 (520)
T 2z7x_B 480 WDCSCPR 486 (520)
T ss_dssp BCCCHHH
T ss_pred CcccCCc
Confidence 9998874
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.4e-46 Score=422.10 Aligned_cols=392 Identities=20% Similarity=0.257 Sum_probs=207.5
Q ss_pred CcCCCCCchHHHhcCCCCccEEECCCCCCCCCC-CCCCCCCcEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccc
Q 005267 113 NQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSID-HLPWKNLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSF 191 (705)
Q Consensus 113 n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 191 (705)
|.+++ +|..+.++ ++|+.|++++|.+++.. +..+. ..+ .|...+.+|..+
T Consensus 435 N~L~~-IP~~l~~L--~~L~~L~Ls~N~Lsg~~i~~~~~-----~~s---------------------~n~~~g~iP~~l 485 (876)
T 4ecn_A 435 NRITF-ISKAIQRL--TKLQIIYFANSPFTYDNIAVDWE-----DAN---------------------SDYAKQYENEEL 485 (876)
T ss_dssp CEEEE-ECGGGGGC--TTCCEEEEESCCCCGGGBSSSCS-----CTT---------------------SHHHHHHTTSCC
T ss_pred Ccccc-hhHHHhcC--CCCCEEECcCCcCCCCccccccc-----ccc---------------------cccccccCChhh
Confidence 67776 77777777 88888888888777621 10000 000 112222334443
Q ss_pred c--CCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCc-CCc-ccchhccCC-------CCCCEEECcCCcCcCCCC
Q 005267 192 C--NLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNN-FQG-TIPQTYAKG-------CNLTYLRLSGNHLEGPLP 259 (705)
Q Consensus 192 ~--~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~-l~~-~~~~~~~~l-------~~L~~L~L~~n~l~~~~~ 259 (705)
+ ++++|++|++++|.+.+.+|..++. ++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|
T Consensus 486 ~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip 564 (876)
T 4ecn_A 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP 564 (876)
T ss_dssp CGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred hhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence 3 4444444444444444444444433 444444444444 444 344433332 25555555555555 455
Q ss_pred c--cCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCC-CCeEeccCcccccccCccccc
Q 005267 260 P--SLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTS-LSFLDVGNNSLSGPIPEYLGN 336 (705)
Q Consensus 260 ~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~ 336 (705)
. .+.++++|++|++++|.++ .+| .|+.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+. .+|..+..
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred ChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence 4 5555555555555555555 444 5555555555555555555 44555555555 555555555555 44444332
Q ss_pred C---cccEEEcCCCcccccccccc---c--CCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhC-
Q 005267 337 S---TLEVLDMRMNKFSGSLPQTF---G--KSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDV- 407 (705)
Q Consensus 337 ~---~L~~L~l~~n~l~~~~~~~~---~--~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~- 407 (705)
. +|+.|++++|++.+.+|... . .+++|+.|++++|.++...+..+..+++|+.|++++|+++...+..+..
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~ 720 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc
Confidence 2 25566666666555443221 1 2335667777777766332223346667777777777666333222222
Q ss_pred ------CCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCccccccccccccc
Q 005267 408 ------LPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYS 481 (705)
Q Consensus 408 ------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 481 (705)
+++|+.|+|++|++. .+|.......+++|+.|++++|++++ +|..+.
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~------------------------- 773 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL------------------------- 773 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG-------------------------
T ss_pred cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhh-------------------------
Confidence 226777777777776 34433311246666666666666665 343221
Q ss_pred ceeeEEEEecCchHHHhhhhccccEEEccC------CccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCee
Q 005267 482 YYESISLTMKGNDIQMERILTTFATIDLSS------NRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESL 555 (705)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 555 (705)
.+++|+.|+|++ |++.+.+|..++++++|++|+|++|++ +.+|..+. ++|+.|
T Consensus 774 ------------------~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~L 832 (876)
T 4ecn_A 774 ------------------NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYIL 832 (876)
T ss_dssp ------------------GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEE
T ss_pred ------------------cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEE
Confidence 155666666655 555566666666666666666666666 35555544 466666
Q ss_pred eCCCCcCCCcCcccccCCCCCCeEecccCcc
Q 005267 556 DLSSNKLAGRIPTQLASLNYLSVLNLSNNQL 586 (705)
Q Consensus 556 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 586 (705)
||++|++....+..+.....+..+.+.+|++
T Consensus 833 dLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 833 DIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp ECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred ECCCCCCCccChHHccccccchheeecCCCc
Confidence 6666666555444444444444455555543
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-45 Score=403.42 Aligned_cols=461 Identities=19% Similarity=0.154 Sum_probs=300.9
Q ss_pred CEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCEEec
Q 005267 9 SSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALGL 87 (705)
Q Consensus 9 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L 87 (705)
++||+++|+++ .+|..+. ++|++|++++|.++ .+++..|.++++|++|+|++|++ .+..+..+ .+++|++|++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCcc--CCcChHHhhcccCCCEEec
Confidence 68999999998 5777666 89999999999998 55555569999999999999954 44444444 8999999999
Q ss_pred CCCCCCCCChhccCCCCCCEEEccCCcCCC-CCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCC--cEEEccCCcC--
Q 005267 88 SACNISEFPDILKTQHQLDWLDLSENQIRG-RIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNL--EFLTLDSNLL-- 162 (705)
Q Consensus 88 ~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L--~~L~l~~n~~-- 162 (705)
++|.+..+|.. .+++|++|++++|.+++ .+|..+..+ ++|++|++++|.+++.....+++| ++|++++|.+
T Consensus 77 s~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 77 SHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNM--SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp CSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGC--TTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTT
T ss_pred CCCceeecCcc--ccCCccEEeccCCccccccchhhhccC--CcceEEEecCcccchhhccccccceeeEEEeecccccc
Confidence 99999888876 88999999999999987 477888887 888888888888876444455555 6666666555
Q ss_pred CCCCCCCCCCCc----EEEcccCCCCCCCc-ccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchh
Q 005267 163 QGSLPNLPPHMV----QLSISNNSLTGEIP-SSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQT 237 (705)
Q Consensus 163 ~~~~~~~~~~L~----~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 237 (705)
.+..|..+..++ .+++++|.+.+.++ ..+.++++|+.|++++|...... ..+.+.+| .
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~----------------~~~~~~~~-~ 215 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC----------------SYFLSILA-K 215 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT----------------HHHHHHHH-G
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc----------------ceeecchh-h
Confidence 444444333322 23334444333222 12333444444444443200000 00232333 4
Q ss_pred ccCCCCCCEEECcCCcCcCCCCccCC---CCCcCcEEEccCCcCCCCCCccc-----cCCCCCcEEEccCccccCCCC-c
Q 005267 238 YAKGCNLTYLRLSGNHLEGPLPPSLS---NCVNLQVLDVGNNNLSGPIPECL-----GNSTRLSFLDVRNNNLSGPIP-E 308 (705)
Q Consensus 238 ~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~ 308 (705)
+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++.+|..+ +.+++|+.+++++|.+ .+| .
T Consensus 216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~ 293 (520)
T 2z7x_B 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQS 293 (520)
T ss_dssp GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTH
T ss_pred hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchh
Confidence 45555555555555544432111100 12345555555555554555544 4455555555555544 222 2
Q ss_pred cccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCc
Q 005267 309 CLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLE 388 (705)
Q Consensus 309 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 388 (705)
.+..+ +...+|+.|++++|.+.... .+..+++|++|++++|.+++..|..+..+++|+
T Consensus 294 ~~~~~--------------------~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 351 (520)
T 2z7x_B 294 YIYEI--------------------FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351 (520)
T ss_dssp HHHHH--------------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC
T ss_pred hhhcc--------------------cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCC
Confidence 22221 01123444444444443221 114566677777777777776777777778888
Q ss_pred EEEccCCcCCC--CcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhcccccccc
Q 005267 389 VIDVGNNQINE--TFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRD 466 (705)
Q Consensus 389 ~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~ 466 (705)
+|++++|++++ ..|..+..+++|++|++++|++.+.+|... ...+++|+.|++++|++++..|..+
T Consensus 352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l----------- 419 (520)
T 2z7x_B 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-CSWTKSLLSLNMSSNILTDTIFRCL----------- 419 (520)
T ss_dssp EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-CCCCTTCCEEECCSSCCCGGGGGSC-----------
T ss_pred EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-hccCccCCEEECcCCCCCcchhhhh-----------
Confidence 88888888776 445667788888888888888877444331 1456888999999998876554321
Q ss_pred CCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccc
Q 005267 467 DNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSL 546 (705)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l 546 (705)
.++|++|++++|+++ .+|..+..+++|++|+|++|++++..+..+
T Consensus 420 ----------------------------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~ 464 (520)
T 2z7x_B 420 ----------------------------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIF 464 (520)
T ss_dssp ----------------------------------CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred ----------------------------------cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHh
Confidence 257899999999999 677777799999999999999995444449
Q ss_pred cCCCCCCeeeCCCCcCCCcCc
Q 005267 547 RNLTELESLDLSSNKLAGRIP 567 (705)
Q Consensus 547 ~~l~~L~~L~Ls~N~l~~~~p 567 (705)
..+++|++|++++|++++..+
T Consensus 465 ~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTCTTCCEEECCSSCBCCCHH
T ss_pred ccCCcccEEECcCCCCcccCC
Confidence 999999999999999997655
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.5e-43 Score=396.30 Aligned_cols=512 Identities=20% Similarity=0.188 Sum_probs=323.1
Q ss_pred CCCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCEE
Q 005267 7 QLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWAL 85 (705)
Q Consensus 7 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L 85 (705)
++++|||++|.|++..+.+|.++++|++|+|++|.|+ .+++..|+++++|++|+|++|++. +..+..+ ++++|++|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~--~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC--EECGGGGTTCTTCCEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC--CCCHHHhcCCCCCCEE
Confidence 6888888888888777778888888888888888887 677777788888888888888543 2222223 78888888
Q ss_pred ecCCCCCCCCCh-hccCCCCCCEEEccCCcCCC-CCchHHHhcCCCCccEEECCCCCCCCCCCCCC-------CCCcEEE
Q 005267 86 GLSACNISEFPD-ILKTQHQLDWLDLSENQIRG-RIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPW-------KNLEFLT 156 (705)
Q Consensus 86 ~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~-------~~L~~L~ 156 (705)
++++|.+..+|. .|+++++|++|++++|.+++ ..|..+..+ ++|++|++++|.+++..+..+ .....++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC--TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccc--hhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 888888877764 57888888888888888765 356667766 888888888888877665322 1234667
Q ss_pred ccCCcCCCCCCCC--CCCCcEEEcccCCCCC-CCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcc
Q 005267 157 LDSNLLQGSLPNL--PPHMVQLSISNNSLTG-EIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGT 233 (705)
Q Consensus 157 l~~n~~~~~~~~~--~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 233 (705)
++.|.++...+.. ...+..+++.+|.... ..+..+..+..++...+..+...... .+...
T Consensus 208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~-----------------~l~~~ 270 (635)
T 4g8a_A 208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG-----------------NLEKF 270 (635)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC-----------------CCSCC
T ss_pred cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc-----------------ccccc
Confidence 7777776555444 2334556666665442 22334556666666555433221110 01111
Q ss_pred cchhccCCCCCCEEECcCCcCcC---CCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccc
Q 005267 234 IPQTYAKGCNLTYLRLSGNHLEG---PLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECL 310 (705)
Q Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 310 (705)
....+..+..+....+..+.... ..+..+..+.+++.+++.++.+... ..+.....++.|++.+|.+.+..+
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~--- 345 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT--- 345 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---
Confidence 11122222222222222221110 1122233344455555554444322 123334445555555555443322
Q ss_pred cCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccc--cccccccCCCCccEEEccCCcCCCCCCccccCCCCCc
Q 005267 311 GNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSG--SLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLE 388 (705)
Q Consensus 311 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 388 (705)
..++.|+.+++..|..... +......+|+.+++++|.+.. ..+..+..+.+|+.+++..+.... .+..+..+++|+
T Consensus 346 ~~l~~L~~l~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~ 423 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLE 423 (635)
T ss_dssp CBCTTCCEEEEESCCSCCB-CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCC
T ss_pred ccchhhhhcccccccCCCC-cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccccccccc
Confidence 1234445555555544321 222233355555555555432 233444455566666666666553 333455666666
Q ss_pred EEEccCCcCCCCcc-hhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCccc-CChHhhhhcccccccc
Q 005267 389 VIDVGNNQINETFP-HWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGV-LPIWYLNGFKAMMRRD 466 (705)
Q Consensus 389 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~p~~~~~~~~~l~~~~ 466 (705)
.++++.|......+ ..+..+++++.++++.|.+.+..+... ..++.++.|++++|++.+. .|..+
T Consensus 424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~--~~~~~L~~L~Ls~N~~~~~~~~~~~----------- 490 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIF----------- 490 (635)
T ss_dssp EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCC-----------
T ss_pred chhhhhcccccccccccccccccccccccccccccccccccc--ccchhhhhhhhhhcccccccCchhh-----------
Confidence 66666665544332 345566777777777777666555444 4566777777777764432 22111
Q ss_pred CCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccc
Q 005267 467 DNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSL 546 (705)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l 546 (705)
..+++|++|||++|++++.+|..|+++++|++|+|++|++++..|..|
T Consensus 491 --------------------------------~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~ 538 (635)
T 4g8a_A 491 --------------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538 (635)
T ss_dssp --------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG
T ss_pred --------------------------------hhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH
Confidence 116789999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeeeCCCCcCCCcCcccccCC-CCCCeEecccCcccccCCC
Q 005267 547 RNLTELESLDLSSNKLAGRIPTQLASL-NYLSVLNLSNNQLEGPIPG 592 (705)
Q Consensus 547 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~ 592 (705)
+.+++|++|||++|++++..|+.+..+ ++|++|++++|++.|.|..
T Consensus 539 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred hCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 999999999999999999999999998 6899999999999999863
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.2e-44 Score=408.53 Aligned_cols=383 Identities=17% Similarity=0.226 Sum_probs=215.4
Q ss_pred CCCEEecCC--CCCCCCChhccCCCCCCEEEccCCcCCCC-----------------CchHHH--hcCCCCccEEECCCC
Q 005267 81 NLWALGLSA--CNISEFPDILKTQHQLDWLDLSENQIRGR-----------------IPSWMW--DIGVHTLFRLDLSRN 139 (705)
Q Consensus 81 ~L~~L~L~~--n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~-----------------~~~~l~--~l~~~~L~~L~ls~n 139 (705)
.++.+.+.. |.+..+|..+.++++|++|+|++|.+++. +|..++ .+ ++|
T Consensus 424 ~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L--~~L-------- 493 (876)
T 4ecn_A 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL--KDL-------- 493 (876)
T ss_dssp CCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC--TTC--------
T ss_pred chhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC--CCC--------
Confidence 344444443 55645888888899999999999988872 444433 33 333
Q ss_pred CCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCc-CCc-cCCcccCC
Q 005267 140 FLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNS-LSG-QIPQCLGN 217 (705)
Q Consensus 140 ~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~-~~~-~~~~~~~~ 217 (705)
++|++++|.+.+.+|..|+++++|++|++++|+ +++ .+|..++.
T Consensus 494 ----------------------------------~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~ 539 (876)
T 4ecn_A 494 ----------------------------------TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539 (876)
T ss_dssp ----------------------------------CEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH
T ss_pred ----------------------------------CEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh
Confidence 333333333333444444444455555555444 443 33332211
Q ss_pred --------CCCCEEEcCCCcCCcccch--hccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCcccc
Q 005267 218 --------STLENLDLGMNNFQGTIPQ--TYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLG 287 (705)
Q Consensus 218 --------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 287 (705)
++|++|++++|.++ .+|. .++++++|++|+|++|.++ .+| .+..+++|+.|++++|.+. .+|..+.
T Consensus 540 L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~ 615 (876)
T 4ecn_A 540 LADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC 615 (876)
T ss_dssp HHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSC
T ss_pred hhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHh
Confidence 34555555555555 4444 5555555555555555555 444 4555555555555555555 4454555
Q ss_pred CCCC-CcEEEccCccccCCCCccccCCCC--CCeEeccCcccccccCccc------ccCcccEEEcCCCccccccccccc
Q 005267 288 NSTR-LSFLDVRNNNLSGPIPECLGNSTS--LSFLDVGNNSLSGPIPEYL------GNSTLEVLDMRMNKFSGSLPQTFG 358 (705)
Q Consensus 288 ~l~~-L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~~------~~~~L~~L~l~~n~l~~~~~~~~~ 358 (705)
.+++ |+.|++++|.++ .+|..+..++. |+.|++++|.+.+.+|... ...+|+.|++++|.++...+..+.
T Consensus 616 ~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~ 694 (876)
T 4ecn_A 616 AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694 (876)
T ss_dssp EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHH
T ss_pred hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHc
Confidence 5555 555555555555 34444444332 5555555555554443322 112455555555555532222333
Q ss_pred CCCCccEEEccCCcCCCCCCccc-c-------CCCCCcEEEccCCcCCCCcchhhh--CCCCCCEEEccCCcCcCCCCCC
Q 005267 359 KSCVLVSLKLNGNRLEGPLPPSL-V-------NCRHLEVIDVGNNQINETFPHWLD--VLPELQVLTLRSNRFCGPIGDT 428 (705)
Q Consensus 359 ~~~~L~~L~L~~n~l~~~~~~~l-~-------~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~ 428 (705)
.+++|+.|+|++|+++ .+|..+ . ++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++.+ +|..
T Consensus 695 ~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~ 771 (876)
T 4ecn_A 695 TGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ 771 (876)
T ss_dssp TTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred cCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchh
Confidence 5555566666665555 333222 1 1225666666666665 3444443 55666666666666655 3333
Q ss_pred CCCCCCCCccEEEccC------CcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhc
Q 005267 429 KTRVPFPKLRIIDLSY------NQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILT 502 (705)
Q Consensus 429 ~~~~~~~~L~~L~ls~------n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 502 (705)
. ..+++|+.|++++ |++.+.+|..+. .++
T Consensus 772 l--~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~-------------------------------------------~L~ 806 (876)
T 4ecn_A 772 P--LNSSQLKAFGIRHQRDAEGNRILRQWPTGIT-------------------------------------------TCP 806 (876)
T ss_dssp G--GGCTTCCEEECCCCBCTTCCBCCCCCCTTGG-------------------------------------------GCS
T ss_pred h--hcCCCCCEEECCCCCCcccccccccChHHHh-------------------------------------------cCC
Confidence 2 3455666666654 677777664431 178
Q ss_pred cccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCC
Q 005267 503 TFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 563 (705)
Q Consensus 503 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 563 (705)
+|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..+.....+..+.|++|++.
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 899999999999 67777665 69999999999998877778777777778888888765
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-42 Score=383.60 Aligned_cols=488 Identities=19% Similarity=0.190 Sum_probs=284.3
Q ss_pred CCCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCEE
Q 005267 7 QLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWAL 85 (705)
Q Consensus 7 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L 85 (705)
..+++|+++|+++. +|..+. ++|++|++++|.++ .+++..|+++++|++|+|++|++ .+..+..+ .+++|++|
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCC--CEECTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCC--CcCCHHHhCCCCCCCEE
Confidence 34678888887774 565554 67888888888877 45545557888888888888743 33334433 67778888
Q ss_pred ecCCCCCCCCChhccCCCCCCEEEccCCcCCC-CCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEccCCcCCC
Q 005267 86 GLSACNISEFPDILKTQHQLDWLDLSENQIRG-RIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQG 164 (705)
Q Consensus 86 ~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~ 164 (705)
++++|.+..+|.. .+++|++|++++|.+++ .+|..+.++ ++|++|++++|.+++.....+++|
T Consensus 106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~L------------ 169 (562)
T 3a79_B 106 DVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNL--TKLTFLGLSAAKFRQLDLLPVAHL------------ 169 (562)
T ss_dssp ECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGC--TTCCEEEEECSBCCTTTTGGGTTS------------
T ss_pred ECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhccc--CcccEEecCCCccccCchhhhhhc------------
Confidence 8888877777765 67778888888877775 345667766 777777777777665433333333
Q ss_pred CCCCCCCCCcEEEcccCCC--CCCCcccccCCC--CCcEEEcccCcCCccCCcccCC--CCCCEEEcCCCcCC----ccc
Q 005267 165 SLPNLPPHMVQLSISNNSL--TGEIPSSFCNLS--SIQYLYLSNNSLSGQIPQCLGN--STLENLDLGMNNFQ----GTI 234 (705)
Q Consensus 165 ~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~--~L~~L~ls~n~~~~~~~~~~~~--~~L~~L~L~~n~l~----~~~ 234 (705)
+|++|++++|.+ ++..|..+..+. .+ .+++++|.+.+.++..... ++|+.+++++|... ...
T Consensus 170 -------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~ 241 (562)
T 3a79_B 170 -------HLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241 (562)
T ss_dssp -------CEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH
T ss_pred -------eeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHH
Confidence 125555555555 445555554443 22 3455555555443332211 45555555554310 012
Q ss_pred chhccCCCCCCEEECcCCcCcCC----CCccCCCCCcCcEEEccCCcCCCCCCccc-----cCCCCCcEEEccCccccCC
Q 005267 235 PQTYAKGCNLTYLRLSGNHLEGP----LPPSLSNCVNLQVLDVGNNNLSGPIPECL-----GNSTRLSFLDVRNNNLSGP 305 (705)
Q Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~ 305 (705)
...+..+++|+.++++++.+.+. .+..+ ..++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .
T Consensus 242 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~ 318 (562)
T 3a79_B 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--L 318 (562)
T ss_dssp HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--S
T ss_pred HHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--e
Confidence 23455556666666655544321 11111 12355555555555554444443 3333333333333332 1
Q ss_pred CC-ccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCC
Q 005267 306 IP-ECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNC 384 (705)
Q Consensus 306 ~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 384 (705)
+| ..+.. .+...+|+.|++++|.+.... ....+++|++|++++|.+++..|..+.++
T Consensus 319 ~p~~~~~~--------------------~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 376 (562)
T 3a79_B 319 FSKEALYS--------------------VFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376 (562)
T ss_dssp SCHHHHHH--------------------HHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSC
T ss_pred cChhhhhh--------------------hhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhccc
Confidence 11 11100 111124555555555543221 11455667777777777776666677777
Q ss_pred CCCcEEEccCCcCCCCc--chhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhcccc
Q 005267 385 RHLEVIDVGNNQINETF--PHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAM 462 (705)
Q Consensus 385 ~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l 462 (705)
++|++|++++|++++.. |..+..+++|+.|++++|++.+.++... ...
T Consensus 377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~~----------------------------- 426 (562)
T 3a79_B 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT-CAW----------------------------- 426 (562)
T ss_dssp SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC-CCC-----------------------------
T ss_pred CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh-hcC-----------------------------
Confidence 77777777777776532 3455666666666666666654333221 011
Q ss_pred ccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccC
Q 005267 463 MRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGI 542 (705)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 542 (705)
+++|++|++++|++++.+|..+. ++|++|+|++|+++ .+
T Consensus 427 --------------------------------------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~i 465 (562)
T 3a79_B 427 --------------------------------------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SI 465 (562)
T ss_dssp --------------------------------------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CC
T ss_pred --------------------------------------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-cc
Confidence 45666677777777665555443 68999999999998 67
Q ss_pred CccccCCCCCCeeeCCCCcCCCcCccc-ccCCCCCCeEecccCcccccCCCCCCCCCCC--CCcccCCCCCCCCCCCCCC
Q 005267 543 PSSLRNLTELESLDLSSNKLAGRIPTQ-LASLNYLSVLNLSNNQLEGPIPGGPQFNTFG--IDSYSGNVGLCGFPLSKIC 619 (705)
Q Consensus 543 p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~--~~~~~~n~~lcg~~~~~~c 619 (705)
|..+..+++|++|+|++|++++ +|.. +..+++|++|++++|++.|.||....+..+. ......+..-|++|....|
T Consensus 466 p~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 544 (562)
T 3a79_B 466 PKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKC 544 (562)
T ss_dssp CTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCB
T ss_pred ChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCcc
Confidence 7777799999999999999994 5554 8999999999999999999888543322111 0001112233466777778
Q ss_pred CC
Q 005267 620 RI 621 (705)
Q Consensus 620 ~~ 621 (705)
..
T Consensus 545 ~~ 546 (562)
T 3a79_B 545 SG 546 (562)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.5e-41 Score=379.33 Aligned_cols=522 Identities=20% Similarity=0.161 Sum_probs=362.6
Q ss_pred EEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCEEecCCCCCCCCCh-hccCCCCCCEEEcc
Q 005267 34 FVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWALGLSACNISEFPD-ILKTQHQLDWLDLS 111 (705)
Q Consensus 34 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls 111 (705)
+.+.++-+++ .||..+ =+++++|||++|+|+ +..+..+ ++++|++|+|++|.+..+|+ +|.++++|++|+|+
T Consensus 35 ~~~c~~~~l~-~vP~~l---p~~~~~LdLs~N~i~--~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp EEECTTSCCS-SCCSSS---CTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred EEECCCCCcC-ccCCCC---CcCCCEEEeeCCCCC--CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEcc
Confidence 3444444444 455333 124555555555332 1111122 45555555555555555542 45556666666666
Q ss_pred CCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC---CCCCCCcEEEccCCcCCCC-CCCC---CCCCcEEEcccCCCC
Q 005267 112 ENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH---LPWKNLEFLTLDSNLLQGS-LPNL---PPHMVQLSISNNSLT 184 (705)
Q Consensus 112 ~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~l~~n~~~~~-~~~~---~~~L~~L~l~~n~l~ 184 (705)
+|++++..+..+.++ ++|++|++++|.++++.+ ..+++|++|++++|.+++. .|.. +++|++|++++|.++
T Consensus 109 ~N~l~~l~~~~f~~L--~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 109 GNPIQSLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TCCCCEECGGGGTTC--TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCcCCCCCHHHhcCC--CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 666554334445544 566666666666655543 3456666666666666543 2332 577888888888888
Q ss_pred CCCcccccCCCCC----cEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCc-ccchhccCCCCCCEEECcCCc------
Q 005267 185 GEIPSSFCNLSSI----QYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQG-TIPQTYAKGCNLTYLRLSGNH------ 253 (705)
Q Consensus 185 ~~~~~~~~~l~~L----~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~------ 253 (705)
+..+..+..+.++ ..++++.|.+....+..+....++.+++.+|.... ..+..+..+..++...+..+.
T Consensus 187 ~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 266 (635)
T 4g8a_A 187 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 266 (635)
T ss_dssp EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence 7777776654443 46888888888766666666778888888886553 344567777787776664332
Q ss_pred CcCCCCccCCCCCcCcEEEccCCcCCC---CCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCccccccc
Q 005267 254 LEGPLPPSLSNCVNLQVLDVGNNNLSG---PIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPI 330 (705)
Q Consensus 254 l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 330 (705)
+.......+..+..+...++..+.... ..+..+..+.+++.+++.++.+... ..+....+|+.|++.+|.+.+..
T Consensus 267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCC
T ss_pred cccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcC
Confidence 222333455556667777666554321 2334456678899999999888754 34667788999999999887544
Q ss_pred CcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCC--CCCccccCCCCCcEEEccCCcCCCCcchhhhCC
Q 005267 331 PEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEG--PLPPSLVNCRHLEVIDVGNNQINETFPHWLDVL 408 (705)
Q Consensus 331 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 408 (705)
+. ....|+.+++..|..... .....+++|+.+++++|.+.. ..+..+..+.+|+.+++..|.+... +..+..+
T Consensus 345 ~~--~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l 419 (635)
T 4g8a_A 345 TL--KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGL 419 (635)
T ss_dssp CC--BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTC
T ss_pred cc--cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-ccccccc
Confidence 32 234788999998887643 234568899999999998864 4556677889999999999987553 4457789
Q ss_pred CCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEE
Q 005267 409 PELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISL 488 (705)
Q Consensus 409 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (705)
++|+.+++.+|......+.. ....+++++.++++.|.+.+..+..+
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~-~~~~l~~l~~l~ls~n~l~~~~~~~~--------------------------------- 465 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRVAFNGIF--------------------------------- 465 (635)
T ss_dssp TTCCEEECTTSEEESTTSSC-TTTTCTTCCEEECTTSCCEECCTTTT---------------------------------
T ss_pred ccccchhhhhcccccccccc-cccccccccccccccccccccccccc---------------------------------
Confidence 99999999999877655433 23568899999999999987665332
Q ss_pred EecCchHHHhhhhccccEEEccCCcc-ccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCc
Q 005267 489 TMKGNDIQMERILTTFATIDLSSNRF-QGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 567 (705)
Q Consensus 489 ~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 567 (705)
..++.++.|++++|++ .+.+|..++.+++|++|+|++|++++.+|..|+++++|++|+|++|++++..|
T Consensus 466 ----------~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~ 535 (635)
T 4g8a_A 466 ----------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535 (635)
T ss_dssp ----------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred ----------ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence 1167899999999985 45678889999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCeEecccCcccccCCCCC-CC-CCCCCCcccCCCCCCCCC
Q 005267 568 TQLASLNYLSVLNLSNNQLEGPIPGGP-QF-NTFGIDSYSGNVGLCGFP 614 (705)
Q Consensus 568 ~~l~~l~~L~~L~ls~N~l~g~ip~~~-~~-~~~~~~~~~~n~~lcg~~ 614 (705)
..|..+++|++|++++|++++..|... .+ .+.......+||.-|++.
T Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999999999999999988642 22 334445667888888643
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.2e-42 Score=368.08 Aligned_cols=302 Identities=26% Similarity=0.303 Sum_probs=120.6
Q ss_pred CCCCCCEEecCCCCCCCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEc
Q 005267 78 SFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTL 157 (705)
Q Consensus 78 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l 157 (705)
..++|++|++++|.++.+|+.++++++|++|++++|.+.+.+|..++.+ .+|+.+++..|.. .++++|++
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l--~~L~~l~l~~c~~--------~~l~~L~l 78 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ--REMAVSRLRDCLD--------RQAHELEL 78 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCC--HHHHHHHHHHHHH--------HTCSEEEC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccc--hhcchhhhhhhhc--------cCCCEEEe
Confidence 4567777777777777778778888888888888888777777776655 5553333332221 22344444
Q ss_pred cCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchh
Q 005267 158 DSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQT 237 (705)
Q Consensus 158 ~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 237 (705)
++|.+++ +|..+++|++|++++|.+++ +|.. +++|++|++++|.+++ ++... ++|++|++++|.+++ +| .
T Consensus 79 ~~~~l~~-lp~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~~--~~L~~L~L~~n~l~~-lp-~ 148 (454)
T 1jl5_A 79 NNLGLSS-LPELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDLP--PLLEYLGVSNNQLEK-LP-E 148 (454)
T ss_dssp TTSCCSC-CCSCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSCC--TTCCEEECCSSCCSS-CC-C
T ss_pred cCCcccc-CCCCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCCC--CCCCEEECcCCCCCC-Cc-c
Confidence 4444332 22233444444444444443 3321 2344455555554442 11110 344444444444443 33 2
Q ss_pred ccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCC
Q 005267 238 YAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLS 317 (705)
Q Consensus 238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 317 (705)
++.+++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .++++++|++|++++|.+++ +|... ++|+
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~ 218 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLE 218 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCC
T ss_pred cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---Cccc
Confidence 4444555555555554442 33221 244445555444443 23 34444444444444444443 12111 2444
Q ss_pred eEeccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcC
Q 005267 318 FLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQI 397 (705)
Q Consensus 318 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 397 (705)
.|++++|.+. .+|......+|+.|++++|++++ +|.. .++|++|++++|++++ +|.. +++|++|++++|++
T Consensus 219 ~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 219 SIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIF 289 (454)
T ss_dssp EEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred EEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCcc
Confidence 4444444443 23322222244444444444432 1211 1344444444444443 2221 24445555555544
Q ss_pred CCCcchhhhCCCCCCEEEccCCcCc
Q 005267 398 NETFPHWLDVLPELQVLTLRSNRFC 422 (705)
Q Consensus 398 ~~~~~~~~~~l~~L~~L~L~~n~l~ 422 (705)
++... ..++|+.|++++|++.
T Consensus 290 ~~l~~----~~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 290 SGLSE----LPPNLYYLNASSNEIR 310 (454)
T ss_dssp SEESC----CCTTCCEEECCSSCCS
T ss_pred CcccC----cCCcCCEEECcCCcCC
Confidence 43110 0134555555555444
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-40 Score=360.83 Aligned_cols=383 Identities=21% Similarity=0.255 Sum_probs=280.8
Q ss_pred EEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccC-CcccCC-CCCCEEEcCCCcCC
Q 005267 154 FLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQI-PQCLGN-STLENLDLGMNNFQ 231 (705)
Q Consensus 154 ~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~-~~~~~~-~~L~~L~L~~n~l~ 231 (705)
.++.+++.++. +|..++++++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..+.. ++|++|++++|.++
T Consensus 14 ~~~c~~~~l~~-lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 14 NAICINRGLHQ-VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp EEECCSSCCSS-CCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred ccCcCCCCccc-CCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC
Confidence 45555555543 3446678888888888888777888888888999999888886554 344544 78888888888888
Q ss_pred cccchhccCCCCCCEEECcCCcCcCCCCcc--CCCCCcCcEEEccCCcCCCCCCcc-ccCCCCCcEEEccCccccCCCCc
Q 005267 232 GTIPQTYAKGCNLTYLRLSGNHLEGPLPPS--LSNCVNLQVLDVGNNNLSGPIPEC-LGNSTRLSFLDVRNNNLSGPIPE 308 (705)
Q Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~ 308 (705)
+..|..|+++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +.++++|++|++++|.+++..+.
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence 777888888888888888888887644443 777888888888888887776665 67788888888888888777776
Q ss_pred cccCC--CCCCeEeccCcccccccCccc---------ccCcccEEEcCCCcccccccccccCC---CCccEEEccCCcCC
Q 005267 309 CLGNS--TSLSFLDVGNNSLSGPIPEYL---------GNSTLEVLDMRMNKFSGSLPQTFGKS---CVLVSLKLNGNRLE 374 (705)
Q Consensus 309 ~l~~l--~~L~~L~l~~n~l~~~~~~~~---------~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~L~~n~l~ 374 (705)
.+..+ .+|+.|++++|.+.+..+..+ ...+|+.|++++|++++..|..+... .+|+.|++++|...
T Consensus 173 ~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccc
Confidence 66655 567777777777765443322 22356777777776666655554332 56666666666554
Q ss_pred CCCCccccCCCCCcEEEccCCcCCCCcchhhh--CCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCC
Q 005267 375 GPLPPSLVNCRHLEVIDVGNNQINETFPHWLD--VLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLP 452 (705)
Q Consensus 375 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p 452 (705)
+... ..+.+.+..+..+. ..++|+.|++++|.+.+..+..+ ..+++|++|++++|++++..|
T Consensus 253 ~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 253 GSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF--SHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp SCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT--TTCTTCCEEECTTSCCCEECT
T ss_pred cccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhc--ccCCCCCEEECCCCcccccCh
Confidence 3211 01112222222222 23677777888777777666554 557788888888888776555
Q ss_pred hHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEe
Q 005267 453 IWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLN 532 (705)
Q Consensus 453 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 532 (705)
..+. .+++|++|+|++|.+++..|..++.+++|++|+
T Consensus 317 ~~~~-------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 317 NAFW-------------------------------------------GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TTTT-------------------------------------------TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred hHhc-------------------------------------------CcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 3321 167899999999999988899999999999999
Q ss_pred cCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCCCCCC
Q 005267 533 ISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQF 596 (705)
Q Consensus 533 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 596 (705)
|++|++++..|..+..+++|++|+|++|++++..+..+..+++|++|++++|+++|.+|....+
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 9999999998999999999999999999999888888899999999999999999999964333
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.6e-41 Score=361.32 Aligned_cols=420 Identities=25% Similarity=0.347 Sum_probs=215.5
Q ss_pred CCCCCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCccCCCCCCE
Q 005267 5 LTQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWA 84 (705)
Q Consensus 5 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 84 (705)
.++|++|++++|.+ +.+|..++++++|++|++++|.+.|.+|..+ +++++|+.+++++| . ..++++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c--~----------~~~l~~ 75 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDC--L----------DRQAHE 75 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHH--H----------HHTCSE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhh--h----------ccCCCE
Confidence 45677777777777 5777777777777777777777777777665 66777666666665 1 145677
Q ss_pred EecCCCCCCCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEccCCcCCC
Q 005267 85 LGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQG 164 (705)
Q Consensus 85 L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~ 164 (705)
|++++|.+..+|.. .++|++|++++|.+++ +|.. . ++|++|++++| .+++
T Consensus 76 L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~~---~--~~L~~L~l~~n---------------------~l~~ 125 (454)
T 1jl5_A 76 LELNNLGLSSLPEL---PPHLESLVASCNSLTE-LPEL---P--QSLKSLLVDNN---------------------NLKA 125 (454)
T ss_dssp EECTTSCCSCCCSC---CTTCSEEECCSSCCSS-CCCC---C--TTCCEEECCSS---------------------CCSC
T ss_pred EEecCCccccCCCC---cCCCCEEEccCCcCCc-cccc---c--CCCcEEECCCC---------------------ccCc
Confidence 77777777666652 2567777777776664 4431 1 44444444444 4443
Q ss_pred CCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCC
Q 005267 165 SLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNL 244 (705)
Q Consensus 165 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 244 (705)
++..+++|++|++++|.+++ +| +++++++|++|++++|.+++ +|... .+|++|++++|.+++ +| .++.+++|
T Consensus 126 -l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L 197 (454)
T 1jl5_A 126 -LSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFL 197 (454)
T ss_dssp -CCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred -ccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCC
Confidence 23334678888888888885 66 58889999999999998874 55433 578888888888776 44 57778888
Q ss_pred CEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCc
Q 005267 245 TYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNN 324 (705)
Q Consensus 245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 324 (705)
++|++++|.+++ +|... ++|++|++++|.+. .+|. ++.+++|++|++++|.+++ +|.. .++|+.|++++|
T Consensus 198 ~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N 267 (454)
T 1jl5_A 198 TAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDN 267 (454)
T ss_dssp CEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSS
T ss_pred CEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCC
Confidence 888888888774 44322 47777777777777 4553 6777777777777777764 3322 356666666666
Q ss_pred ccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchh
Q 005267 325 SLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHW 404 (705)
Q Consensus 325 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 404 (705)
.+.+ +|.. ..+|+.|++++|++++. | .+ .++|++|++++|++++. +
T Consensus 268 ~l~~-l~~~--~~~L~~L~ls~N~l~~l-~---------------------~~------~~~L~~L~l~~N~l~~i-~-- 313 (454)
T 1jl5_A 268 YLTD-LPEL--PQSLTFLDVSENIFSGL-S---------------------EL------PPNLYYLNASSNEIRSL-C-- 313 (454)
T ss_dssp CCSC-CCCC--CTTCCEEECCSSCCSEE-S---------------------CC------CTTCCEEECCSSCCSEE-C--
T ss_pred cccc-cCcc--cCcCCEEECcCCccCcc-c---------------------Cc------CCcCCEEECcCCcCCcc-c--
Confidence 6654 3322 13455555555554431 1 11 13455555555555431 1
Q ss_pred hhCC-CCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccce
Q 005267 405 LDVL-PELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYY 483 (705)
Q Consensus 405 ~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 483 (705)
.+ ++|+.|++++|++.+ +|. .+++|+.|++++|++++ +|. .
T Consensus 314 --~~~~~L~~L~Ls~N~l~~-lp~-----~~~~L~~L~L~~N~l~~-lp~-~---------------------------- 355 (454)
T 1jl5_A 314 --DLPPSLEELNVSNNKLIE-LPA-----LPPRLERLIASFNHLAE-VPE-L---------------------------- 355 (454)
T ss_dssp --CCCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSC-CCC-C----------------------------
T ss_pred --CCcCcCCEEECCCCcccc-ccc-----cCCcCCEEECCCCcccc-ccc-h----------------------------
Confidence 12 356666666666654 222 14567777777776653 331 0
Q ss_pred eeEEEEecCchHHHhhhhccccEEEccCCcccc--ccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCc
Q 005267 484 ESISLTMKGNDIQMERILTTFATIDLSSNRFQG--EISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNK 561 (705)
Q Consensus 484 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 561 (705)
+++|++|++++|++++ .+|..++. ++.|.+.+.+|.. +++|+.||+++|+
T Consensus 356 -----------------l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 356 -----------------PQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNP 407 (454)
T ss_dssp -----------------CTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC------------------------
T ss_pred -----------------hhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCc
Confidence 4667777788887777 55554432 3456677777763 4788999999999
Q ss_pred CCC--cCcccccCCCCCCeEecccCcccccCCC
Q 005267 562 LAG--RIPTQLASLNYLSVLNLSNNQLEGPIPG 592 (705)
Q Consensus 562 l~~--~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 592 (705)
+++ .+|.. ++.|.+.+|.+.+++|.
T Consensus 408 l~~~~~iP~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 408 LREFPDIPES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ---------------------------------
T ss_pred CCccccchhh------HhheeCcCcccCCcccc
Confidence 987 66643 56677888988888764
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.7e-40 Score=366.75 Aligned_cols=454 Identities=19% Similarity=0.211 Sum_probs=281.9
Q ss_pred CCCEEecCCCCCCCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC---CCCCCCcEEEc
Q 005267 81 NLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH---LPWKNLEFLTL 157 (705)
Q Consensus 81 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~l 157 (705)
..+++++++|.++.+|..+. ++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+ ..+++|++|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFL--SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTC--TTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccC--CCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 34566666666655665443 566666666666665555555555 666666666666655543 23444555555
Q ss_pred cCCcCCCCCCCCCCCCcEEEcccCCCCC-CCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccch
Q 005267 158 DSNLLQGSLPNLPPHMVQLSISNNSLTG-EIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQ 236 (705)
Q Consensus 158 ~~n~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 236 (705)
++|.++...+..+++|++|++++|.+++ ..|..|+++++|++|++++|.+.+..... .++|
T Consensus 108 s~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~L---------------- 169 (562)
T 3a79_B 108 SHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP--VAHL---------------- 169 (562)
T ss_dssp TTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGG--GTTS----------------
T ss_pred CCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhh--hhhc----------------
Confidence 5555442222234556666666666654 23456666777777777766665311111 1222
Q ss_pred hccCCCCCCEEECcCCcC--cCCCCccCCCCC-cCcEEEccCCcCCCCCCc-cccCCCCCcEEEccCcc-----ccCCCC
Q 005267 237 TYAKGCNLTYLRLSGNHL--EGPLPPSLSNCV-NLQVLDVGNNNLSGPIPE-CLGNSTRLSFLDVRNNN-----LSGPIP 307 (705)
Q Consensus 237 ~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~-----l~~~~~ 307 (705)
+|++|++++|.+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|. +.+ ..
T Consensus 170 ------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~ 242 (562)
T 3a79_B 170 ------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FL 242 (562)
T ss_dssp ------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HH
T ss_pred ------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HH
Confidence 224555555544 444444444332 111334455554443332 23445556666666553 111 12
Q ss_pred ccccCCCCCCeEeccCcccccc----cCcccccCcccEEEcCCCcccccccccc-----cCCCCccEEEccCCcCCCCCC
Q 005267 308 ECLGNSTSLSFLDVGNNSLSGP----IPEYLGNSTLEVLDMRMNKFSGSLPQTF-----GKSCVLVSLKLNGNRLEGPLP 378 (705)
Q Consensus 308 ~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~ 378 (705)
..+..+++|+.++++++.+.+. ++......+|++|++++|.+++.+|..+ ..+..|+.+++..+.+ .+|
T Consensus 243 ~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p 320 (562)
T 3a79_B 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFS 320 (562)
T ss_dssp HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSC
T ss_pred HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecC
Confidence 3355566666666666555432 1222233477788888887777777666 6666777777777766 333
Q ss_pred -ccccC---CCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChH
Q 005267 379 -PSLVN---CRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIW 454 (705)
Q Consensus 379 -~~l~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~ 454 (705)
..+.. ..+|+.|++++|.+..... ...+++|++|++++|++.+..+..+ ..+++|+.|++++|++++..+..
T Consensus 321 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~ 396 (562)
T 3a79_B 321 KEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGC--STLKRLQTLILQRNGLKNFFKVA 396 (562)
T ss_dssp HHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTC--CSCSSCCEEECCSSCCCBTTHHH
T ss_pred hhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhh--cccCCCCEEECCCCCcCCcccch
Confidence 22222 2568888998888754331 2578889999999999888776655 56889999999999887532110
Q ss_pred hhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccc-hhhhcCCCCCEEec
Q 005267 455 YLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEIS-EVLGKLNSLKSLNI 533 (705)
Q Consensus 455 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L 533 (705)
. ....+++|++|++++|++++.+| ..+..+++|++|++
T Consensus 397 ~-----------------------------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l 435 (562)
T 3a79_B 397 L-----------------------------------------MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435 (562)
T ss_dssp H-----------------------------------------TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred h-----------------------------------------hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEEC
Confidence 0 00126889999999999998455 45889999999999
Q ss_pred CCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCCC--CCCCCCCCCcccCCCCCC
Q 005267 534 SHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG--PQFNTFGIDSYSGNVGLC 611 (705)
Q Consensus 534 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~~~~~~~~~n~~lc 611 (705)
++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+.........+|+.-|
T Consensus 436 ~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 436 SSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 99999988887765 79999999999999 67877779999999999999999 56654 334444555667888777
Q ss_pred CCC
Q 005267 612 GFP 614 (705)
Q Consensus 612 g~~ 614 (705)
+++
T Consensus 512 ~c~ 514 (562)
T 3a79_B 512 TCP 514 (562)
T ss_dssp CHH
T ss_pred Ccc
Confidence 644
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3e-38 Score=342.53 Aligned_cols=378 Identities=21% Similarity=0.215 Sum_probs=257.2
Q ss_pred cEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCccc-chhccCCCCCCEEECcC
Q 005267 174 VQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTI-PQTYAKGCNLTYLRLSG 251 (705)
Q Consensus 174 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~ 251 (705)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..+.. ++|++|++++|.+.+.+ +..|..+++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 35666666666 4444 2 256777777777777666666655 77777777777765433 45667777777777777
Q ss_pred CcCcCCCCccCCCCCcCcEEEccCCcCCCCCCcc--ccCCCCCcEEEccCccccCCCCcc-ccCCCCCCeEeccCccccc
Q 005267 252 NHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPEC--LGNSTRLSFLDVRNNNLSGPIPEC-LGNSTSLSFLDVGNNSLSG 328 (705)
Q Consensus 252 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~ 328 (705)
|.+++..|..|..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +.++++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 7777666667777777777777777776544433 666777777777777777665554 6667777777777777666
Q ss_pred ccCccccc---CcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhh
Q 005267 329 PIPEYLGN---STLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWL 405 (705)
Q Consensus 329 ~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 405 (705)
..+..+.. ..++.+++++|.+.+..+..+.. .....+..+++|++|++++|++++..|..+
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred cChhhhhccccccccccccccCcccccchhhccc----------------cccccccccceeeeEecCCCcccccchhhh
Confidence 55554432 25566666666555433222110 000011233445555555555555444444
Q ss_pred hCC---CCCCEEEccCCcCcCC----------CCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccc
Q 005267 406 DVL---PELQVLTLRSNRFCGP----------IGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEV 472 (705)
Q Consensus 406 ~~l---~~L~~L~L~~n~l~~~----------~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~ 472 (705)
... ++|+.|++++|...+. .+..+.....++|+.|++++|.+++..|..+.
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---------------- 296 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS---------------- 296 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT----------------
T ss_pred hccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcc----------------
Confidence 322 5555555555543322 11122222357899999999999987664421
Q ss_pred cccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCC
Q 005267 473 NYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTEL 552 (705)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 552 (705)
.+++|++|+|++|++++..|..++++++|++|+|++|.+++..|..++.+++|
T Consensus 297 ---------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 297 ---------------------------HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp ---------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ---------------------------cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 16889999999999999999999999999999999999998889999999999
Q ss_pred CeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCCC-CCCCCCCCCcccCCCCCCCCC
Q 005267 553 ESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG-PQFNTFGIDSYSGNVGLCGFP 614 (705)
Q Consensus 553 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~~lcg~~ 614 (705)
++|+|++|++++..|..+..+++|++|++++|++++..|.. ..+..+....+.+|+.-|++|
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999999999999999999999999999755533 344555666677888877765
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=338.22 Aligned_cols=348 Identities=20% Similarity=0.196 Sum_probs=247.9
Q ss_pred cEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCc
Q 005267 198 QYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNN 277 (705)
Q Consensus 198 ~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 277 (705)
+.++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~-~ip~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcC-cCCCCCC-CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 35666666555 3444322 456666666666665555666666666666666666665556666666666666666666
Q ss_pred CCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccc
Q 005267 278 LSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTF 357 (705)
Q Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 357 (705)
+++..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++| .+.+..+..|
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-----------------------~l~~~~~~~~ 148 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-----------------------DLVYISHRAF 148 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-----------------------TCCEECTTSS
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-----------------------ccceeChhhc
Confidence 65444445555666666666666655555555555555555555554 4444555566
Q ss_pred cCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCc
Q 005267 358 GKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKL 437 (705)
Q Consensus 358 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 437 (705)
..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+.++... ....+|
T Consensus 149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L 226 (477)
T 2id5_A 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNL 226 (477)
T ss_dssp TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCC
T ss_pred cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccc
Confidence 677777777777777776666667777888888888888777777777778888888888877766665544 234589
Q ss_pred cEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccc
Q 005267 438 RIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGE 517 (705)
Q Consensus 438 ~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 517 (705)
+.|++++|++++ +|...+. .+++|+.|+|++|.+++.
T Consensus 227 ~~L~l~~n~l~~-~~~~~~~------------------------------------------~l~~L~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 227 TSLSITHCNLTA-VPYLAVR------------------------------------------HLVYLRFLNLSYNPISTI 263 (477)
T ss_dssp SEEEEESSCCCS-CCHHHHT------------------------------------------TCTTCCEEECCSSCCCEE
T ss_pred cEEECcCCcccc-cCHHHhc------------------------------------------CccccCeeECCCCcCCcc
Confidence 999999998874 3432222 168899999999999998
Q ss_pred cchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCCCCCCC
Q 005267 518 ISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFN 597 (705)
Q Consensus 518 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~ 597 (705)
.+..+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|++.|.++..+.+.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~ 343 (477)
T 2id5_A 264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFR 343 (477)
T ss_dssp CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHT
T ss_pred ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHh
Confidence 88889999999999999999999999999999999999999999998888889999999999999999999887544333
Q ss_pred CCCCCcccCCCCCCCCCC
Q 005267 598 TFGIDSYSGNVGLCGFPL 615 (705)
Q Consensus 598 ~~~~~~~~~n~~lcg~~~ 615 (705)
......+.++...|+.|.
T Consensus 344 ~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 344 RRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp TTTSSCCTTCCCBEEESG
T ss_pred hhhccccCccCceeCCch
Confidence 334445667777776553
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.1e-37 Score=331.78 Aligned_cols=365 Identities=21% Similarity=0.171 Sum_probs=255.1
Q ss_pred cCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCccCCCCCCEEecCCCCCCCCChhcc
Q 005267 21 SIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDILK 100 (705)
Q Consensus 21 ~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~ 100 (705)
..+..+.++++|++|++++|.+++ +| . |+.+++|++|++++|++.. ++ ...+++|++|++++|.+..+| +.
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~---~~-~~~l~~L~~L~Ls~N~l~~~~--~~ 103 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITT---LD-LSQNTNLTYLACDSNKLTNLD--VT 103 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSC---CC-CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred ccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCe---Ec-cccCCCCCEEECcCCCCceee--cC
Confidence 344556677777777777777773 44 3 4777777777777774433 22 236777777777777776665 67
Q ss_pred CCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCC-CCCCcEEEcc
Q 005267 101 TQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNL-PPHMVQLSIS 179 (705)
Q Consensus 101 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~ 179 (705)
.+++|++|++++|.+++ ++ +..+ ++|++|++++|.+++.....+++|++|++++|...+.++-. +++|++|+++
T Consensus 104 ~l~~L~~L~L~~N~l~~-l~--~~~l--~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTK-LD--VSQN--PLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS 178 (457)
T ss_dssp TCTTCCEEECCSSCCSC-CC--CTTC--TTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECC
T ss_pred CCCcCCEEECCCCcCCe-ec--CCCC--CcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECC
Confidence 77777777777777775 33 4555 77777777777777765566777777777777554444322 6777777777
Q ss_pred cCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCC
Q 005267 180 NNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLP 259 (705)
Q Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (705)
+|.+++ +| ++.+++|+.|++++|.+++. +....++|++|++++|++++ +| ++.+++|++|++++|++++..
T Consensus 179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 179 FNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp SSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred CCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence 777775 33 67777788888887777654 22223777777777777776 34 667777777777777777542
Q ss_pred ccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcc
Q 005267 260 PSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTL 339 (705)
Q Consensus 260 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L 339 (705)
+..+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|. ....|
T Consensus 250 --~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L 309 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC--QAAGI 309 (457)
T ss_dssp --CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--TTCCC
T ss_pred --HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc--CCCcc
Confidence 345667777776654 35566777777666655 46778888888888887766663 22355
Q ss_pred cEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCC
Q 005267 340 EVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 419 (705)
Q Consensus 340 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 419 (705)
+.+++++| ++|++|++++|++++. .+..+++|+.|++++|++++ ++.|..|.+++|
T Consensus 310 ~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n 365 (457)
T 3bz5_A 310 TELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNN 365 (457)
T ss_dssp SCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGT
T ss_pred eEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCC
Confidence 55555444 6789999999999974 38889999999999999876 356777788888
Q ss_pred cCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhc
Q 005267 420 RFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGF 459 (705)
Q Consensus 420 ~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 459 (705)
.+.|. ..+..|+.+++++|+++|.+|..+....
T Consensus 366 ~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~~~~~ 398 (457)
T 3bz5_A 366 NFEAE-------GQTITMPKETLTNNSLTIAVSPDLLDQF 398 (457)
T ss_dssp SEEEE-------EEEEECCCBCCBTTBEEEECCTTCBCTT
T ss_pred cEEec-------ceeeecCccccccCcEEEEcChhHhccc
Confidence 88775 2345677889999999999997765443
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.8e-36 Score=324.25 Aligned_cols=345 Identities=27% Similarity=0.339 Sum_probs=250.1
Q ss_pred CCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECc
Q 005267 171 PHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLS 250 (705)
Q Consensus 171 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 250 (705)
++++.|+++++.+.. +| .+..+++|++|++++|.+.+..+ ....++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 345555555555542 33 25566666666666666664433 2223666777777666665444 6777777777777
Q ss_pred CCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCccccccc
Q 005267 251 GNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPI 330 (705)
Q Consensus 251 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 330 (705)
+|.+++. +. +..+++|++|++++|.+.+. + .++.+++|++|+++ |.+.+.. .+.++++|+.|++++|.+.+.
T Consensus 121 ~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 121 NNQITDI-DP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI- 192 (466)
T ss_dssp SSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC-
T ss_pred CCCCCCC-hH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC-
Confidence 7777643 32 66777777777777777642 2 36677777777775 3444332 367777777777777776643
Q ss_pred CcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCC
Q 005267 331 PEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPE 410 (705)
Q Consensus 331 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 410 (705)
+......+|+.|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++++..+ +..+++
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 266 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTK 266 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCC
Confidence 333344477778887777776554 56678888888888888753 457788888888888888887655 778888
Q ss_pred CCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEe
Q 005267 411 LQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTM 490 (705)
Q Consensus 411 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (705)
|+.|++++|++.+..+ ...+++|+.|++++|++++..+.
T Consensus 267 L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~~------------------------------------- 305 (466)
T 1o6v_A 267 LTELKLGANQISNISP----LAGLTALTNLELNENQLEDISPI------------------------------------- 305 (466)
T ss_dssp CSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCGGG-------------------------------------
T ss_pred CCEEECCCCccCcccc----ccCCCccCeEEcCCCcccCchhh-------------------------------------
Confidence 8888888888876544 25678899999999988764331
Q ss_pred cCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccc
Q 005267 491 KGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQL 570 (705)
Q Consensus 491 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 570 (705)
..+++|+.|++++|++++..| ++.+++|++|++++|++++. ..+..+++|+.|++++|++++..| +
T Consensus 306 --------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 371 (466)
T 1o6v_A 306 --------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L 371 (466)
T ss_dssp --------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--G
T ss_pred --------cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--h
Confidence 116889999999999998766 78999999999999999975 578899999999999999998877 8
Q ss_pred cCCCCCCeEecccCccccc
Q 005267 571 ASLNYLSVLNLSNNQLEGP 589 (705)
Q Consensus 571 ~~l~~L~~L~ls~N~l~g~ 589 (705)
..+++|+.|++++|++++.
T Consensus 372 ~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 372 ANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp TTCTTCCEEECCCEEEECC
T ss_pred hcCCCCCEEeccCCcccCC
Confidence 8999999999999999983
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.5e-36 Score=321.52 Aligned_cols=357 Identities=20% Similarity=0.241 Sum_probs=175.9
Q ss_pred cCCCCCCEEEccCCCCcceecccCccCCCCCCEEecCCCCCCCCChhccCCCCCCEEEccCCcCCCCCchHHHhcCCCCc
Q 005267 52 AKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTL 131 (705)
Q Consensus 52 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L 131 (705)
+++++|++|++++|.+.. ++....+++|++|++++|.+..+| +..+++|++|++++|.+++. + +..+ ++|
T Consensus 39 ~~l~~L~~L~Ls~n~l~~---~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l--~~L 108 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITD---MTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D--VTPL--TKL 108 (457)
T ss_dssp HHHTTCCEEECCSSCCCC---CTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CTTC--TTC
T ss_pred hHcCCCCEEEccCCCccc---ChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e--cCCC--CcC
Confidence 555566666666553321 222224555555555555554443 44555555555555555432 2 3333 444
Q ss_pred cEEECCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccC
Q 005267 132 FRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQI 211 (705)
Q Consensus 132 ~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~ 211 (705)
++|++++|.+++..... +++|++|++++|.+++. .++++++|++|++++|...+.+
T Consensus 109 ~~L~L~~N~l~~l~~~~---------------------l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 109 TYLNCDTNKLTKLDVSQ---------------------NPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp CEEECCSSCCSCCCCTT---------------------CTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC
T ss_pred CEEECCCCcCCeecCCC---------------------CCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc
Confidence 44444444444332222 34444444444444432 1455555555555555433333
Q ss_pred CcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCC
Q 005267 212 PQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTR 291 (705)
Q Consensus 212 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 291 (705)
+ ....++|++|++++|++++. | +..+++|++|++++|.+++. .+..+++|++|++++|++++ +| ++.+++
T Consensus 165 ~-~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~ 234 (457)
T 3bz5_A 165 D-VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQ 234 (457)
T ss_dssp C-CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTT
T ss_pred c-cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCC
Confidence 1 11224555555555555542 2 44555555555555555543 24555555555555555554 33 455555
Q ss_pred CcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCC
Q 005267 292 LSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGN 371 (705)
Q Consensus 292 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 371 (705)
|+.|++++|.+++.. +..+++|+.|+++.|+ |+.+++++|.+.+.+|
T Consensus 235 L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~-------------L~~L~l~~n~~~~~~~----------------- 281 (457)
T 3bz5_A 235 LTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD-------------LLEIDLTHNTQLIYFQ----------------- 281 (457)
T ss_dssp CSEEECCSSCCSCCC---CTTCTTCCEEECTTCC-------------CSCCCCTTCTTCCEEE-----------------
T ss_pred CCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC-------------CCEEECCCCccCCccc-----------------
Confidence 555555555555432 2334455555544432 2334444444443333
Q ss_pred cCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccC
Q 005267 372 RLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVL 451 (705)
Q Consensus 372 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 451 (705)
+..+++|+.|++++|...+.+|. ..++|+.|++++| ++|+.|++++|++++.
T Consensus 282 ---------~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~---------------~~L~~L~L~~N~l~~l- 333 (457)
T 3bz5_A 282 ---------AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN---------------PKLVYLYLNNTELTEL- 333 (457)
T ss_dssp ---------CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC---------------TTCCEEECTTCCCSCC-
T ss_pred ---------ccccccCCEEECCCCcccceecc---CCCcceEechhhc---------------ccCCEEECCCCccccc-
Confidence 23444455555555544444432 2233444433332 3455555555555542
Q ss_pred ChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEE
Q 005267 452 PIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSL 531 (705)
Q Consensus 452 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 531 (705)
+ +. .++.|+.||+++|++++ ++.|..|
T Consensus 334 ~---l~------------------------------------------~l~~L~~L~l~~N~l~~--------l~~L~~L 360 (457)
T 3bz5_A 334 D---VS------------------------------------------HNTKLKSLSCVNAHIQD--------FSSVGKI 360 (457)
T ss_dssp C---CT------------------------------------------TCTTCSEEECCSSCCCB--------CTTGGGS
T ss_pred c---cc------------------------------------------cCCcCcEEECCCCCCCC--------ccccccc
Confidence 1 00 04566666666666664 2345556
Q ss_pred ecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCccccc
Q 005267 532 NISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLA 571 (705)
Q Consensus 532 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 571 (705)
++++|.++|. +.+..|+.+++++|+++|.+|..+.
T Consensus 361 ~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 361 PALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp SGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred cccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 6777777654 2445667777777777777776543
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.8e-35 Score=318.36 Aligned_cols=324 Identities=27% Similarity=0.352 Sum_probs=252.3
Q ss_pred CCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEEC
Q 005267 170 PPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRL 249 (705)
Q Consensus 170 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 249 (705)
+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ .-..++|++|++++|.+++..+ +..+++|++|++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 141 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 141 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEEC
Confidence 5666777777777764433 7778888888888887775444 2233788888888888776543 778888888888
Q ss_pred cCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccc
Q 005267 250 SGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGP 329 (705)
Q Consensus 250 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 329 (705)
++|.+.+ ++ .+..+++|++|+++ |.+.+.. .+.++++|++|++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 142 ~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 142 SSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp EEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccc
Confidence 8888874 33 47788888888886 4444332 377888888888888887754 3477888888888888888765
Q ss_pred cCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCC
Q 005267 330 IPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLP 409 (705)
Q Consensus 330 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 409 (705)
.+ .....+|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..++
T Consensus 215 ~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~ 287 (466)
T 1o6v_A 215 TP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 287 (466)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred cc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCC
Confidence 54 33345888888888888754 457788899999999999986544 8889999999999999987655 78899
Q ss_pred CCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEE
Q 005267 410 ELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLT 489 (705)
Q Consensus 410 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (705)
+|+.|++++|++.+..+ ...+++|+.|++++|++++..|..
T Consensus 288 ~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~----------------------------------- 328 (466)
T 1o6v_A 288 ALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISPVS----------------------------------- 328 (466)
T ss_dssp TCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGGGG-----------------------------------
T ss_pred ccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCCCchhhc-----------------------------------
Confidence 99999999999887554 256889999999999988765411
Q ss_pred ecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCc
Q 005267 490 MKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGR 565 (705)
Q Consensus 490 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 565 (705)
.+++|++|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 329 ----------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 329 ----------SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp ----------GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred ----------cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 168899999999999876 468899999999999999998877 88999999999999999963
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=316.52 Aligned_cols=345 Identities=21% Similarity=0.198 Sum_probs=211.1
Q ss_pred EEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCc
Q 005267 154 FLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQG 232 (705)
Q Consensus 154 ~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~ 232 (705)
.++++++.++......++++++|++++|.+++..+..|.++++|++|++++|.+++..|..+.. ++|++|++++|.+++
T Consensus 15 ~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp EEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred EEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence 4555555555333334566677777777776666666777777777777777666555555544 566666666666655
Q ss_pred ccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccC
Q 005267 233 TIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGN 312 (705)
Q Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 312 (705)
..+..|.++++|++|+|++|.+.+..|..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 174 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc
Confidence 44455555666666666666665555555555666666666666555555555555555555555555555444444555
Q ss_pred CCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEc
Q 005267 313 STSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDV 392 (705)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 392 (705)
+++|+.|++++|. +.+..+..|..+++|+.|++++|...+.+|.......+|+.|++
T Consensus 175 l~~L~~L~l~~n~-----------------------i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 175 LHGLIVLRLRHLN-----------------------INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp CTTCCEEEEESCC-----------------------CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred cCCCcEEeCCCCc-----------------------CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 5555555555544 44444455666677777777777666666655555567888888
Q ss_pred cCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccc
Q 005267 393 GNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEV 472 (705)
Q Consensus 393 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~ 472 (705)
++|++++..+..+..+++|+.|+|++|++.+..+..+ ..
T Consensus 232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~--------------------------------------- 270 (477)
T 2id5_A 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML--HE--------------------------------------- 270 (477)
T ss_dssp ESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC--TT---------------------------------------
T ss_pred cCCcccccCHHHhcCccccCeeECCCCcCCccChhhc--cc---------------------------------------
Confidence 8888877666777888888888888887765433222 22
Q ss_pred cccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCC
Q 005267 473 NYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTEL 552 (705)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 552 (705)
+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|
T Consensus 271 ----------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 271 ----------------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322 (477)
T ss_dssp ----------------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred ----------------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCccc
Confidence 3455555666666666666667777777777777777776666667777777
Q ss_pred CeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCC
Q 005267 553 ESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 591 (705)
Q Consensus 553 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 591 (705)
++|+|++|++.+..+... -......+++.++...|..|
T Consensus 323 ~~L~l~~N~l~c~c~~~~-~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 323 ETLILDSNPLACDCRLLW-VFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CEEECCSSCEECSGGGHH-HHTTTTSSCCTTCCCBEEES
T ss_pred CEEEccCCCccCccchHh-HHhhhhccccCccCceeCCc
Confidence 777777777765433211 11223334555565555555
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.2e-34 Score=301.72 Aligned_cols=333 Identities=21% Similarity=0.230 Sum_probs=198.7
Q ss_pred CCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEE
Q 005267 170 PPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLR 248 (705)
Q Consensus 170 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 248 (705)
++++++|++++|.++...+..+..+++|++|++++|.+.+..+..+.. ++|++|++++|.+++..|..|+.+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 356666677766666444444666777777777777776555545544 6667777777666666666666677777777
Q ss_pred CcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCccccc
Q 005267 249 LSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSG 328 (705)
Q Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 328 (705)
+++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 777766644334456666777777777766666566666666677777766666643 24455666666666665542
Q ss_pred ccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCC
Q 005267 329 PIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVL 408 (705)
Q Consensus 329 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 408 (705)
.. ....|+.|++++|.+ ... |. ...++|+.|++++|++++. .++..+
T Consensus 201 ~~----~~~~L~~L~l~~n~l------------------------~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l 247 (390)
T 3o6n_A 201 LA----IPIAVEELDASHNSI------------------------NVV-RG--PVNVELTILKLQHNNLTDT--AWLLNY 247 (390)
T ss_dssp EE----CCSSCSEEECCSSCC------------------------CEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGC
T ss_pred cC----CCCcceEEECCCCee------------------------eec-cc--cccccccEEECCCCCCccc--HHHcCC
Confidence 11 112444455544444 422 11 1134556666666655543 345555
Q ss_pred CCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEE
Q 005267 409 PELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISL 488 (705)
Q Consensus 409 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (705)
++|++|++++|.+.+..+..+ ..
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~--~~------------------------------------------------------- 270 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPF--VK------------------------------------------------------- 270 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGG--TT-------------------------------------------------------
T ss_pred CCccEEECCCCcCCCcChhHc--cc-------------------------------------------------------
Confidence 555555555555443322211 11
Q ss_pred EecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcc
Q 005267 489 TMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPT 568 (705)
Q Consensus 489 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 568 (705)
+++|++|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|+++.. |
T Consensus 271 ------------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~- 334 (390)
T 3o6n_A 271 ------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K- 334 (390)
T ss_dssp ------------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-
T ss_pred ------------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-
Confidence 3344444444444443 2333455677888888888777 4566677788888888888888744 3
Q ss_pred cccCCCCCCeEecccCcccccCCCCCCCCCCCCCcccCCCCCCCC
Q 005267 569 QLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGIDSYSGNVGLCGF 613 (705)
Q Consensus 569 ~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~ 613 (705)
+..+++|++|++++|++.+.... ..+..+....+.+++..|+.
T Consensus 335 -~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 335 -LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp -CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred -chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 66778888899999988876432 23444555556666666654
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.3e-34 Score=319.48 Aligned_cols=334 Identities=22% Similarity=0.256 Sum_probs=211.5
Q ss_pred CCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEE
Q 005267 194 LSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLD 272 (705)
Q Consensus 194 l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (705)
+++++.+++++|.+....+..+.. ++|++|++++|.+++..|..|+.+++|++|+|++|.+++..|..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 445566666666555333333332 5566666666665555555555566666666666665555555555566666666
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCccccc
Q 005267 273 VGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGS 352 (705)
Q Consensus 273 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 352 (705)
+++|.+++..+..|+.+++|++|++++|.+++..|..|..+++|+.|++++|.+++..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------- 187 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------------------- 187 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----------------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----------------------
Confidence 6666555444444555556666666666555555555555555555555555554321
Q ss_pred ccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCC
Q 005267 353 LPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRV 432 (705)
Q Consensus 353 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 432 (705)
+..+++|+.|++++|.+++ +...++|+.|++++|.+....+. ..++|+.|++++|.+++. . ...
T Consensus 188 ----~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~--~l~ 251 (597)
T 3oja_B 188 ----LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--A--WLL 251 (597)
T ss_dssp ----GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--G--GGG
T ss_pred ----hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--h--hhc
Confidence 2233445555555554442 22334555555655555443222 124566666666666542 1 124
Q ss_pred CCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCC
Q 005267 433 PFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSN 512 (705)
Q Consensus 433 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 512 (705)
.+++|+.|++++|.+++..|..+. .+++|+.|+|++|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~-------------------------------------------~l~~L~~L~Ls~N 288 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFV-------------------------------------------KMQRLERLYISNN 288 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGT-------------------------------------------TCSSCCEEECTTS
T ss_pred cCCCCCEEECCCCccCCCCHHHhc-------------------------------------------CccCCCEEECCCC
Confidence 466777777777777766554321 1678888999999
Q ss_pred ccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCC
Q 005267 513 RFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG 592 (705)
Q Consensus 513 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 592 (705)
.+++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|++++. | +..+++|+.|++++|++.|.++.
T Consensus 289 ~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 289 RLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp CCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred CCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH
Confidence 8886 4566778999999999999999 6788889999999999999999865 3 67788999999999999997653
Q ss_pred CCCCCCCCCCcccCCCCCCCCC
Q 005267 593 GPQFNTFGIDSYSGNVGLCGFP 614 (705)
Q Consensus 593 ~~~~~~~~~~~~~~n~~lcg~~ 614 (705)
..+..+....+.++...|+.+
T Consensus 364 -~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 364 -ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp -HHTTTCCTTTBCCCCCCCCTT
T ss_pred -HHHHHHhhhccccccccCCcc
Confidence 345666777788899999864
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.8e-32 Score=285.84 Aligned_cols=307 Identities=26% Similarity=0.338 Sum_probs=184.7
Q ss_pred ccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcE
Q 005267 191 FCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQV 270 (705)
Q Consensus 191 ~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 270 (705)
+..+++|++|+++++.+. .++..-..++|++|++++|.+++..+ +..+++|++|++++|.+++ + +.+..+++|++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~ 114 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE 114 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred chhcccccEEEEeCCccc-cchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence 445677777777777765 33433333666666666666664333 6666666666666666653 2 24666666666
Q ss_pred EEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCccc
Q 005267 271 LDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFS 350 (705)
Q Consensus 271 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 350 (705)
|++++|.+.+. +. +..+++|++|++++|......+ .+..+++|+.|++++|.+.+..+
T Consensus 115 L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~------------------- 172 (347)
T 4fmz_A 115 LYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP------------------- 172 (347)
T ss_dssp EECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-------------------
T ss_pred EECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-------------------
Confidence 66666666543 22 5566666666666664443322 25555566666665555543222
Q ss_pred ccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCC
Q 005267 351 GSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKT 430 (705)
Q Consensus 351 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 430 (705)
+..+++|++|++++|.+.+..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|++.+..+
T Consensus 173 ------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~---- 238 (347)
T 4fmz_A 173 ------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP---- 238 (347)
T ss_dssp ------GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----
T ss_pred ------hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc----
Confidence 4444555555555555543221 5555555566666555554433 4555566666666665554332
Q ss_pred CCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEcc
Q 005267 431 RVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLS 510 (705)
Q Consensus 431 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 510 (705)
...+++|++|++++|.+++. + . + ..+++|++|+++
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~-~-~-~------------------------------------------~~l~~L~~L~l~ 273 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI-N-A-V------------------------------------------KDLTKLKMLNVG 273 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-G-G------------------------------------------TTCTTCCEEECC
T ss_pred hhcCCCCCEEECCCCccCCC-h-h-H------------------------------------------hcCCCcCEEEcc
Confidence 23456666666666665532 1 0 0 115677777777
Q ss_pred CCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCccc
Q 005267 511 SNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 587 (705)
Q Consensus 511 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 587 (705)
+|++++. ..+..+++|++|++++|.+++..|..++.+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 274 ~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 274 SNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 7777754 347778888888888888887777778888888888888888876655 777888888888888764
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.8e-32 Score=281.43 Aligned_cols=304 Identities=24% Similarity=0.401 Sum_probs=223.8
Q ss_pred CCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEEC
Q 005267 170 PPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRL 249 (705)
Q Consensus 170 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 249 (705)
++++++|+++++.+.. ++ .+..+++|++|++++|.+++. +.....++|++|++++|.+++. ..+..+++|++|++
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYL 117 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEEC
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hhhhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEEC
Confidence 6899999999999984 44 488999999999999999854 4433449999999999999864 46999999999999
Q ss_pred cCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccc
Q 005267 250 SGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGP 329 (705)
Q Consensus 250 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 329 (705)
++|.+.+. +. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 118 ~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 118 NEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp TTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred cCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence 99999854 44 8899999999999997665444 48999999999999999986543 88999999999999988743
Q ss_pred cCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCC
Q 005267 330 IPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLP 409 (705)
Q Consensus 330 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 409 (705)
.+ .....+|+.+++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++. ..+
T Consensus 193 ~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~---- 261 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV---- 261 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGG----
T ss_pred cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhH----
Confidence 32 3333356666666665554332 4445555555555555543222 44445555555555544432 123
Q ss_pred CCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEE
Q 005267 410 ELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLT 489 (705)
Q Consensus 410 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (705)
..+++|+.|++++|++++. +. +
T Consensus 262 ----------------------~~l~~L~~L~l~~n~l~~~-~~--~--------------------------------- 283 (347)
T 4fmz_A 262 ----------------------KDLTKLKMLNVGSNQISDI-SV--L--------------------------------- 283 (347)
T ss_dssp ----------------------TTCTTCCEEECCSSCCCCC-GG--G---------------------------------
T ss_pred ----------------------hcCCCcCEEEccCCccCCC-hh--h---------------------------------
Confidence 3455666666666655542 10 0
Q ss_pred ecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCC
Q 005267 490 MKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA 563 (705)
Q Consensus 490 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 563 (705)
..+++|+.|++++|++++..+..++.+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 284 ---------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 284 ---------NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ---------GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ---------cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 116788999999999998888999999999999999999997766 888999999999999886
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.4e-33 Score=288.70 Aligned_cols=259 Identities=33% Similarity=0.569 Sum_probs=192.8
Q ss_pred CCCcEEEccCccccC--CCCccccCCCCCCeEeccC-cccccccCcccccCcccEEEcCCCcccccccccccCCCCccEE
Q 005267 290 TRLSFLDVRNNNLSG--PIPECLGNSTSLSFLDVGN-NSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSL 366 (705)
Q Consensus 290 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 366 (705)
.+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|. .+..+++|++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-----------------------~l~~l~~L~~L 106 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-----------------------AIAKLTQLHYL 106 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-----------------------GGGGCTTCSEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-----------------------hHhcCCCCCEE
Confidence 467888888888887 6777788888887777774 666655554 44444455555
Q ss_pred EccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCC-CccEEEccCC
Q 005267 367 KLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFP-KLRIIDLSYN 445 (705)
Q Consensus 367 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~ls~n 445 (705)
++++|.+++.+|..|..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+ ..++ +|+.|++++|
T Consensus 107 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRN 184 (313)
T ss_dssp EEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSS
T ss_pred ECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCC
Confidence 555555554555555555555555555555555555555555555555555555554444433 3344 6777777777
Q ss_pred cCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcC
Q 005267 446 QFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKL 525 (705)
Q Consensus 446 ~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 525 (705)
++++.+|..+.. ++ |++|++++|.+++.+|..++.+
T Consensus 185 ~l~~~~~~~~~~-------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l 220 (313)
T 1ogq_A 185 RLTGKIPPTFAN-------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSD 220 (313)
T ss_dssp EEEEECCGGGGG-------------------------------------------CC-CSEEECCSSEEEECCGGGCCTT
T ss_pred eeeccCChHHhC-------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcC
Confidence 777666644311 33 8899999999999999999999
Q ss_pred CCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCCCCCCCCCCCCccc
Q 005267 526 NSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGIDSYS 605 (705)
Q Consensus 526 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~ 605 (705)
++|++|+|++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.
T Consensus 221 ~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~ 299 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299 (313)
T ss_dssp SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc
Confidence 9999999999999977666 888999999999999999999999999999999999999999999998888888888999
Q ss_pred CCCCCCCCCCCCCC
Q 005267 606 GNVGLCGFPLSKIC 619 (705)
Q Consensus 606 ~n~~lcg~~~~~~c 619 (705)
+|+.+||.|+. .|
T Consensus 300 ~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 300 NNKCLCGSPLP-AC 312 (313)
T ss_dssp SSSEEESTTSS-CC
T ss_pred CCCCccCCCCC-CC
Confidence 99999998876 46
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-32 Score=290.09 Aligned_cols=307 Identities=20% Similarity=0.177 Sum_probs=149.0
Q ss_pred CCCCEEECCCCCCCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCcc-CCCCCCE
Q 005267 6 TQLSSLNLADNQLIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNS-SFPNLWA 84 (705)
Q Consensus 6 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~ 84 (705)
+++++|+++++.++...+..+..+++|++|++++|.++ .++...|+.+++|++|++++|.+ .+..+..+ .+++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTV 121 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCC--CcCCHHHhcCCCCCCE
Confidence 44555555555544333333444555555555555554 33333335555555555555522 22222222 4455555
Q ss_pred EecCCCCCCCCChh-ccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEccCCcCC
Q 005267 85 LGLSACNISEFPDI-LKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQ 163 (705)
Q Consensus 85 L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~ 163 (705)
|++++|.+..+|.. +..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++.....+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~l-------------- 185 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT--TSLQNLQLSSNRLTHVDLSLI-------------- 185 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC--TTCCEEECCSSCCSBCCGGGC--------------
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCC--CCCCEEECCCCcCCccccccc--------------
Confidence 55555555444433 3445555555555555544444444433 455555555555444433444
Q ss_pred CCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCC
Q 005267 164 GSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCN 243 (705)
Q Consensus 164 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 243 (705)
++|++|++++|.+++ +...++|++|++++|.+... |.. ..++|++|++++|.+++. ..+..+++
T Consensus 186 -------~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~-~~~~L~~L~l~~n~l~~~--~~l~~l~~ 249 (390)
T 3o6n_A 186 -------PSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP-VNVELTILKLQHNNLTDT--AWLLNYPG 249 (390)
T ss_dssp -------TTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC-CCSSCCEEECCSSCCCCC--GGGGGCTT
T ss_pred -------cccceeecccccccc-----cCCCCcceEEECCCCeeeec-ccc-ccccccEEECCCCCCccc--HHHcCCCC
Confidence 445555555544432 12223455555555555432 111 124555555555555532 34555555
Q ss_pred CCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccC
Q 005267 244 LTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGN 323 (705)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 323 (705)
|++|++++|.+++..|..+..+++|++|++++|++++ +|..+..+++|++|++++|.++ .+|..+..+++|+.|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327 (390)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCS
T ss_pred ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCC
Confidence 5555555555555555555555555555555555553 3444445555556666555555 2344455555566666666
Q ss_pred cccccccCcccccCcccEEEcCCCcccc
Q 005267 324 NSLSGPIPEYLGNSTLEVLDMRMNKFSG 351 (705)
Q Consensus 324 n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 351 (705)
|.++... .....+|+.|++++|++..
T Consensus 328 N~i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 328 NSIVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SCCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred CccceeC--chhhccCCEEEcCCCCccc
Confidence 5554321 1222356666666665543
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.3e-32 Score=301.98 Aligned_cols=312 Identities=22% Similarity=0.230 Sum_probs=241.6
Q ss_pred CCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEE
Q 005267 170 PPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLR 248 (705)
Q Consensus 170 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 248 (705)
+.+++.+++++|.+....+..+.++++|++|++++|.+.+..|..++. ++|++|++++|.+++..|..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 467788888888888666666788899999999999988777767766 8999999999999988888889999999999
Q ss_pred CcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCccccc
Q 005267 249 LSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSG 328 (705)
Q Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 328 (705)
|++|.+++..+..|..+++|++|++++|.+++..|..|+.+++|++|++++|.+++.. +..+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 9999999666666789999999999999999888888999999999999999988652 5667889999999998864
Q ss_pred ccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCC
Q 005267 329 PIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVL 408 (705)
Q Consensus 329 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 408 (705)
.. ....|+.|++++|.+....+.. .++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..+
T Consensus 207 l~----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 207 LA----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp EE----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred cc----CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 21 2237888888888887543332 25688888888888753 567788888888888888887777777777
Q ss_pred CCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEE
Q 005267 409 PELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISL 488 (705)
Q Consensus 409 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (705)
++|+.|+|++|.+.+... .. ..
T Consensus 278 ~~L~~L~Ls~N~l~~l~~-~~--~~------------------------------------------------------- 299 (597)
T 3oja_B 278 QRLERLYISNNRLVALNL-YG--QP------------------------------------------------------- 299 (597)
T ss_dssp SSCCEEECTTSCCCEEEC-SS--SC-------------------------------------------------------
T ss_pred cCCCEEECCCCCCCCCCc-cc--cc-------------------------------------------------------
Confidence 777777777776654211 11 11
Q ss_pred EecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCc
Q 005267 489 TMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIP 567 (705)
Q Consensus 489 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 567 (705)
+++|+.|+|++|.++ .+|..++.+++|++|+|++|.+++.. +..+++|+.|++++|++.+..+
T Consensus 300 ------------l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 300 ------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp ------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred ------------CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH
Confidence 456666777777766 45566777888888888888887542 5667888888888888876543
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.2e-30 Score=269.92 Aligned_cols=288 Identities=20% Similarity=0.238 Sum_probs=183.8
Q ss_pred CCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEecc
Q 005267 243 NLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVG 322 (705)
Q Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 322 (705)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3455555555544 3333332 355555555555554444455555555555555555555555555555555555555
Q ss_pred CcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCC--CCCccccCCCCCcEEEccCCcCCCC
Q 005267 323 NNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEG--PLPPSLVNCRHLEVIDVGNNQINET 400 (705)
Q Consensus 323 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~ 400 (705)
+|.+. .+|.... .+|++|++++|.+++..+..+..+++|++|++++|.++. ..+..+..+ +|++|++++|++++.
T Consensus 111 ~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 111 KNHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SSCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CCcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 55554 2332222 456666666666665555566667777777777777642 555566666 777777777777653
Q ss_pred cchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccc
Q 005267 401 FPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNY 480 (705)
Q Consensus 401 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 480 (705)
|..+ .++|+.|++++|.+.+..+..+ ..+++|+.|++++|++++..+..+.
T Consensus 188 -~~~~--~~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~~~------------------------ 238 (332)
T 2ft3_A 188 -PKDL--PETLNELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRMIENGSLS------------------------ 238 (332)
T ss_dssp -CSSS--CSSCSCCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCCCCTTGGG------------------------
T ss_pred -Cccc--cCCCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCcCChhHhh------------------------
Confidence 3222 2577777777777766554444 4567777777777777765442221
Q ss_pred cceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCC------CCCCe
Q 005267 481 SYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNL------TELES 554 (705)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~ 554 (705)
.+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|... ++|+.
T Consensus 239 -------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~ 298 (332)
T 2ft3_A 239 -------------------FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298 (332)
T ss_dssp -------------------GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSE
T ss_pred -------------------CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccc
Confidence 1677888888888888 667778889999999999999987777776653 67889
Q ss_pred eeCCCCcCC--CcCcccccCCCCCCeEecccCc
Q 005267 555 LDLSSNKLA--GRIPTQLASLNYLSVLNLSNNQ 585 (705)
Q Consensus 555 L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 585 (705)
|++++|++. +..|..|..++.|+.+++++|+
T Consensus 299 L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred eEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999887 6778888889999999998874
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=8.8e-32 Score=275.34 Aligned_cols=251 Identities=31% Similarity=0.509 Sum_probs=141.0
Q ss_pred CCCEEECcCCcCcC--CCCccCCCCCcCcEEEccC-CcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeE
Q 005267 243 NLTYLRLSGNHLEG--PLPPSLSNCVNLQVLDVGN-NNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFL 319 (705)
Q Consensus 243 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 319 (705)
+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555554 4455555555555555552 55554555555555555555555555554444444444444444
Q ss_pred eccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCC-CCcEEEccCCcCC
Q 005267 320 DVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCR-HLEVIDVGNNQIN 398 (705)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~ 398 (705)
++++|.+. +.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|+++
T Consensus 131 ~Ls~N~l~-----------------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 131 DFSYNALS-----------------------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp ECCSSEEE-----------------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred eCCCCccC-----------------------CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 44444444 34444444445555555555555544555555544 5555555555555
Q ss_pred CCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccc
Q 005267 399 ETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSL 478 (705)
Q Consensus 399 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~ 478 (705)
+..|..+..++ |+.|++++|++.+..+..+ ..
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~--~~--------------------------------------------- 219 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLF--GS--------------------------------------------- 219 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGC--CT---------------------------------------------
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHH--hc---------------------------------------------
Confidence 44444444443 4444444444333222111 11
Q ss_pred cccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCC
Q 005267 479 NYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLS 558 (705)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 558 (705)
+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|+.|+|+
T Consensus 220 ----------------------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 220 ----------------------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp ----------------------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred ----------------------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 44555566666666555444 5667777777777777777777777777788888888
Q ss_pred CCcCCCcCcccccCCCCCCeEecccCc-ccc
Q 005267 559 SNKLAGRIPTQLASLNYLSVLNLSNNQ-LEG 588 (705)
Q Consensus 559 ~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~g 588 (705)
+|++++.+|.. ..+++|+.+++++|+ ++|
T Consensus 277 ~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 277 FNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp SSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 88887777775 677778888888887 454
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.9e-30 Score=266.84 Aligned_cols=288 Identities=19% Similarity=0.232 Sum_probs=144.7
Q ss_pred CCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccC
Q 005267 244 LTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGN 323 (705)
Q Consensus 244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 323 (705)
++.++++++.++ .+|..+. +++++|++++|.+++..+..|+++++|++|++++|.+++..|..|..+++|++|++++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 444444444444 2333221 3444555555555444444455555555555555555544445555555555555555
Q ss_pred cccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCC--CCCccccCCCCCcEEEccCCcCCCCc
Q 005267 324 NSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEG--PLPPSLVNCRHLEVIDVGNNQINETF 401 (705)
Q Consensus 324 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~ 401 (705)
|.++. +|..+. .+|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+.++++|++|++++|++++..
T Consensus 110 n~l~~-l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 110 NQLKE-LPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp SCCSB-CCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred CcCCc-cChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 55442 222221 345555555555555555555555666666666665542 44445555566666666666554422
Q ss_pred chhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCccccccccccccc
Q 005267 402 PHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYS 481 (705)
Q Consensus 402 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 481 (705)
. .+ .++|++|++++|++.+..+..+ ..+++|+.|++++|.+++..+..+
T Consensus 188 ~-~~--~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~-------------------------- 236 (330)
T 1xku_A 188 Q-GL--PPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDNGSL-------------------------- 236 (330)
T ss_dssp S-SC--CTTCSEEECTTSCCCEECTGGG--TTCTTCCEEECCSSCCCEECTTTG--------------------------
T ss_pred c-cc--cccCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCceeChhhc--------------------------
Confidence 2 11 1455555555555544433322 334455555555555544332111
Q ss_pred ceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccC------CCCCCee
Q 005267 482 YYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRN------LTELESL 555 (705)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L 555 (705)
..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|.. .++|+.|
T Consensus 237 -----------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l 298 (330)
T 1xku_A 237 -----------------ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298 (330)
T ss_dssp -----------------GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred -----------------cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccce
Confidence 01455666666666665 44555666666666666666666555555532 2556666
Q ss_pred eCCCCcCCC--cCcccccCCCCCCeEecccCc
Q 005267 556 DLSSNKLAG--RIPTQLASLNYLSVLNLSNNQ 585 (705)
Q Consensus 556 ~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~ 585 (705)
++++|++.. ..|..|..+..++.+++++|+
T Consensus 299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred EeecCcccccccCccccccccceeEEEecccC
Confidence 666666642 445566666666666666653
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6e-34 Score=309.36 Aligned_cols=379 Identities=20% Similarity=0.166 Sum_probs=239.7
Q ss_pred CCCcEEEcccCCCCCCCccc-ccCCCCCcEEEcccCcCCcc----CCcccCC-CCCCEEEcCCCcCCcccchhcc-CCC-
Q 005267 171 PHMVQLSISNNSLTGEIPSS-FCNLSSIQYLYLSNNSLSGQ----IPQCLGN-STLENLDLGMNNFQGTIPQTYA-KGC- 242 (705)
Q Consensus 171 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~ls~n~~~~~----~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~-~l~- 242 (705)
+++++|++++|.++...... +..+++|++|++++|.++.. ++..+.. ++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45666666666665433222 55666777777777766532 2333333 6677777777766654333332 233
Q ss_pred ---CCCEEECcCCcCcC----CCCccCCCCCcCcEEEccCCcCCCCCCccc-----cCCCCCcEEEccCccccCCC----
Q 005267 243 ---NLTYLRLSGNHLEG----PLPPSLSNCVNLQVLDVGNNNLSGPIPECL-----GNSTRLSFLDVRNNNLSGPI---- 306 (705)
Q Consensus 243 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~---- 306 (705)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777777763 346667777777777777777654333322 22456777777777776533
Q ss_pred CccccCCCCCCeEeccCcccccccCcccc------cCcccEEEcCCCccccc----ccccccCCCCccEEEccCCcCCCC
Q 005267 307 PECLGNSTSLSFLDVGNNSLSGPIPEYLG------NSTLEVLDMRMNKFSGS----LPQTFGKSCVLVSLKLNGNRLEGP 376 (705)
Q Consensus 307 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~------~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~ 376 (705)
+..+..+++|++|++++|.+.+..+..+. ..+|+.|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44556677888888888877654333322 23788888888877753 466667778888888888877653
Q ss_pred C-----CccccCCCCCcEEEccCCcCCCC----cchhhhCCCCCCEEEccCCcCcCCCCCCC---CCCCCCCccEEEccC
Q 005267 377 L-----PPSLVNCRHLEVIDVGNNQINET----FPHWLDVLPELQVLTLRSNRFCGPIGDTK---TRVPFPKLRIIDLSY 444 (705)
Q Consensus 377 ~-----~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~~~L~~L~ls~ 444 (705)
. +..+..+++|++|++++|++++. ++..+..+++|++|++++|.+.+..+... .....++|+.|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2 22233577888888888888764 45566678888888888887753221111 001235788888888
Q ss_pred CcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhc
Q 005267 445 NQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGK 524 (705)
Q Consensus 445 n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 524 (705)
|.+++.....+.. ....+++|++|++++|.+++..+..+..
T Consensus 323 n~l~~~~~~~l~~---------------------------------------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 363 (461)
T 1z7x_W 323 CSFTAACCSHFSS---------------------------------------VLAQNRFLLELQISNNRLEDAGVRELCQ 363 (461)
T ss_dssp SCCBGGGHHHHHH---------------------------------------HHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCchHHHHHHHH---------------------------------------HHhhCCCccEEEccCCccccccHHHHHH
Confidence 8876542211111 1112577888888888887765555543
Q ss_pred -----CCCCCEEecCCCcCCc----cCCccccCCCCCCeeeCCCCcCCCcCccccc-----CCCCCCeEecccCcccc
Q 005267 525 -----LNSLKSLNISHNNLTG----GIPSSLRNLTELESLDLSSNKLAGRIPTQLA-----SLNYLSVLNLSNNQLEG 588 (705)
Q Consensus 525 -----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~g 588 (705)
.++|++|+|++|.+++ .+|..+..+++|++||+++|++++.....+. ....|+.|.+.++.+..
T Consensus 364 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 6688888888888886 6777788888888888888888754222222 23457777777766554
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.7e-29 Score=258.60 Aligned_cols=221 Identities=21% Similarity=0.284 Sum_probs=122.2
Q ss_pred CCcEEEccCCcCCCCCCCC---CCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCC
Q 005267 151 NLEFLTLDSNLLQGSLPNL---PPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGM 227 (705)
Q Consensus 151 ~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~ 227 (705)
+++.|++++|.+++..+.. +++|++|++++|.+++..|..|+++++|++|++++|.++ .+|..+. ++|++|++++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~~L~~L~l~~ 130 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP-KTLQELRVHE 130 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC-TTCCEEECCS
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc-ccccEEECCC
Confidence 3444444444444333321 455666666666666555666666667777777766665 3343332 5666666666
Q ss_pred CcCCcccchhccCCCCCCEEECcCCcCcC--CCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCC
Q 005267 228 NNFQGTIPQTYAKGCNLTYLRLSGNHLEG--PLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGP 305 (705)
Q Consensus 228 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 305 (705)
|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+++.
T Consensus 131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKV 207 (330)
T ss_dssp SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEE
T ss_pred CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCcc
Confidence 66666666666666666666666666642 445556666666666666666653 333332 5566666666666655
Q ss_pred CCccccCCCCCCeEeccCcccccccCccccc-CcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCC
Q 005267 306 IPECLGNSTSLSFLDVGNNSLSGPIPEYLGN-STLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPL 377 (705)
Q Consensus 306 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 377 (705)
.+..+..+++|+.|++++|.+++..+..+.. .+|+.|++++|+++ .+|..+..+++|++|++++|++++..
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccC
Confidence 5555666666666666666555444433322 24555555555444 33444444444444444444444433
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.3e-29 Score=260.33 Aligned_cols=282 Identities=22% Similarity=0.246 Sum_probs=171.0
Q ss_pred ccEEECCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCC---CCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcC
Q 005267 131 LFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNL---PPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSL 207 (705)
Q Consensus 131 L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~ 207 (705)
++.++++++.++.++..-.++++.|++++|.+++..+.. +++|++|++++|.+++..|..|+++++|++|++++|.+
T Consensus 35 l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 114 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114 (332)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC
Confidence 334444444443333222334444555554444433322 45677777777777766677777777777777777777
Q ss_pred CccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcC--CCCccCCCCCcCcEEEccCCcCCCCCCcc
Q 005267 208 SGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEG--PLPPSLSNCVNLQVLDVGNNNLSGPIPEC 285 (705)
Q Consensus 208 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 285 (705)
+ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.++. ..+..+..+ +|++|++++|.+++ +|..
T Consensus 115 ~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~ 190 (332)
T 2ft3_A 115 V-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKD 190 (332)
T ss_dssp C-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSS
T ss_pred C-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcc
Confidence 6 4444433 677777777777776666667777777777777777742 556666666 77777777777764 4444
Q ss_pred ccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCccccc-CcccEEEcCCCcccccccccccCCCCcc
Q 005267 286 LGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN-STLEVLDMRMNKFSGSLPQTFGKSCVLV 364 (705)
Q Consensus 286 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 364 (705)
+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.. .+|+.|++++|+++ .+|..+..+++|+
T Consensus 191 ~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 191 LP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQ 267 (332)
T ss_dssp SC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCC
T ss_pred cc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCC
Confidence 33 56777777777777666666777777777777777776655544432 36666666666666 4555566666666
Q ss_pred EEEccCCcCCCCCCccccC------CCCCcEEEccCCcCC--CCcchhhhCCCCCCEEEccCC
Q 005267 365 SLKLNGNRLEGPLPPSLVN------CRHLEVIDVGNNQIN--ETFPHWLDVLPELQVLTLRSN 419 (705)
Q Consensus 365 ~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n 419 (705)
+|++++|.+++..+..|.. ...|+.|++++|.+. +..+.++..+++|+.+++++|
T Consensus 268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred EEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 6666666666554444433 244556666666554 444555555555555555554
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.8e-33 Score=303.05 Aligned_cols=355 Identities=20% Similarity=0.169 Sum_probs=272.5
Q ss_pred CCCcEEEcccCcCCccCCcc-cCC-CCCCEEEcCCCcCCc----ccchhccCCCCCCEEECcCCcCcCCCCccC-CCCC-
Q 005267 195 SSIQYLYLSNNSLSGQIPQC-LGN-STLENLDLGMNNFQG----TIPQTYAKGCNLTYLRLSGNHLEGPLPPSL-SNCV- 266 (705)
Q Consensus 195 ~~L~~L~ls~n~~~~~~~~~-~~~-~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~- 266 (705)
++|++|++++|.++...... +.. ++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 57899999999987544332 333 899999999999885 356778888999999999999876433332 2344
Q ss_pred ---cCcEEEccCCcCCC----CCCccccCCCCCcEEEccCccccCCCCccc-----cCCCCCCeEeccCccccccc----
Q 005267 267 ---NLQVLDVGNNNLSG----PIPECLGNSTRLSFLDVRNNNLSGPIPECL-----GNSTSLSFLDVGNNSLSGPI---- 330 (705)
Q Consensus 267 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~---- 330 (705)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999884 457888999999999999999875544333 23568999999999988644
Q ss_pred Ccccc-cCcccEEEcCCCccccccccccc-----CCCCccEEEccCCcCCCC----CCccccCCCCCcEEEccCCcCCCC
Q 005267 331 PEYLG-NSTLEVLDMRMNKFSGSLPQTFG-----KSCVLVSLKLNGNRLEGP----LPPSLVNCRHLEVIDVGNNQINET 400 (705)
Q Consensus 331 ~~~~~-~~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~ 400 (705)
+..+. ..+|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|++++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 33322 35899999999998765544443 356899999999999864 466778899999999999998764
Q ss_pred c-----chhhhCCCCCCEEEccCCcCcCC----CCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCccc
Q 005267 401 F-----PHWLDVLPELQVLTLRSNRFCGP----IGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 471 (705)
Q Consensus 401 ~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~ 471 (705)
. +..+..+++|++|++++|.+++. ++... ..+++|++|++++|.+++..+..+...+
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l------------ 308 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL--RAKESLKELSLAGNELGDEGARLLCETL------------ 308 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH--HHCTTCCEEECTTCCCHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH--hhCCCcceEECCCCCCchHHHHHHHHHh------------
Confidence 3 22333589999999999988753 22221 3478999999999988754333221110
Q ss_pred ccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccc----cchhhhcCCCCCEEecCCCcCCccCCcccc
Q 005267 472 VNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGE----ISEVLGKLNSLKSLNISHNNLTGGIPSSLR 547 (705)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 547 (705)
....++|++|++++|.+++. ++..+..+++|++|+|++|.+++..+..+.
T Consensus 309 --------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 309 --------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp --------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred --------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 01136899999999999876 566778889999999999999977666555
Q ss_pred C-----CCCCCeeeCCCCcCCC----cCcccccCCCCCCeEecccCccccc
Q 005267 548 N-----LTELESLDLSSNKLAG----RIPTQLASLNYLSVLNLSNNQLEGP 589 (705)
Q Consensus 548 ~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~g~ 589 (705)
. .++|++|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 3 6799999999999996 7888999999999999999998764
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.1e-28 Score=253.13 Aligned_cols=207 Identities=23% Similarity=0.241 Sum_probs=132.0
Q ss_pred CCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEE
Q 005267 193 NLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLD 272 (705)
Q Consensus 193 ~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (705)
.++.....+.+++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 3455556777777776 4454332 4677777777777665555666777777777777777665566666667777777
Q ss_pred ccCCcCCCCCCccccCCCCCcEEEccCccccCCCC-ccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccc
Q 005267 273 VGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP-ECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSG 351 (705)
Q Consensus 273 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 351 (705)
+++|.+++..+..++++++|++|++++|.+++..+ ..+..+++|+.|++++|. .+.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~----------------------~~~~ 164 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD----------------------TFTK 164 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS----------------------SCCE
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc----------------------cccc
Confidence 77776665444446666666666666666664333 345556666666555552 2333
Q ss_pred cccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcC
Q 005267 352 SLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCG 423 (705)
Q Consensus 352 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 423 (705)
..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++....+..+..+++|+.|++++|++.+
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 344556667777777777777777777777777788888888887755444444556666666666666554
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.7e-28 Score=251.09 Aligned_cols=280 Identities=20% Similarity=0.195 Sum_probs=187.1
Q ss_pred CCCcEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCC
Q 005267 150 KNLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMN 228 (705)
Q Consensus 150 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n 228 (705)
+.....+++++.++......++++++|++++|.+++..+..|.++++|++|++++|.+++..+..+.. ++|++|++++|
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 33444566666666544444667888888888888666667888888888888888888766666655 78888888888
Q ss_pred cCCcccchhccCCCCCCEEECcCCcCcCCCC-ccCCCCCcCcEEEccCC-cCCCCCCccccCCCCCcEEEccCccccCCC
Q 005267 229 NFQGTIPQTYAKGCNLTYLRLSGNHLEGPLP-PSLSNCVNLQVLDVGNN-NLSGPIPECLGNSTRLSFLDVRNNNLSGPI 306 (705)
Q Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 306 (705)
.+++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..++++++|++|++++|.+++..
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 8886666667888888888888888874333 36777888888888887 456555667777888888888888877777
Q ss_pred CccccCCCCCCeEeccCcccccccCcccc-cCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCC
Q 005267 307 PECLGNSTSLSFLDVGNNSLSGPIPEYLG-NSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCR 385 (705)
Q Consensus 307 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 385 (705)
|..+..+++|++|++++|.+....+..+. ..+|+.|++++|.+++..+..+. ......
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---------------------~~~~~~ 249 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS---------------------TGETNS 249 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------CCC
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc---------------------cccccc
Confidence 77777777777777777776432222221 22455555555555433222111 112345
Q ss_pred CCcEEEccCCcCCC----CcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCC
Q 005267 386 HLEVIDVGNNQINE----TFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLP 452 (705)
Q Consensus 386 ~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p 452 (705)
.++.++++++.+++ .+|.++..+++|+.|++++|+++...+..+ ..+++|++|++++|++.+..|
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH--hcCCCCCEEEeeCCCccCcCC
Confidence 56666777666655 245667777788888888887774332222 457788888888888887665
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.6e-27 Score=241.91 Aligned_cols=250 Identities=22% Similarity=0.264 Sum_probs=147.8
Q ss_pred cEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcc--cchhccCCCCCCEEECc
Q 005267 174 VQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGT--IPQTYAKGCNLTYLRLS 250 (705)
Q Consensus 174 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~ 250 (705)
+.++++++.++ .+|..+. ++|++|++++|.++...+..+.. ++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 35666666666 3444332 46666666666665333333333 5666666666655522 24444455556666666
Q ss_pred CCcCcCCCCccCCCCCcCcEEEccCCcCCCCCC-ccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccc
Q 005267 251 GNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIP-ECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGP 329 (705)
Q Consensus 251 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 329 (705)
+|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-------- 157 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM-------- 157 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC--------
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC--------
Confidence 55555 344445555555555555555554332 34455555555555555555444444444444444444
Q ss_pred cCcccccCcccEEEcCCCcccc-cccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCC
Q 005267 330 IPEYLGNSTLEVLDMRMNKFSG-SLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVL 408 (705)
Q Consensus 330 ~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 408 (705)
++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+
T Consensus 158 ---------------~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 158 ---------------AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp ---------------TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred ---------------CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 4444443 355566666777777777777776666677777777777777777777666667777
Q ss_pred CCCCEEEccCCcCcCCCCCCCCCCCC-CCccEEEccCCcCcccCC
Q 005267 409 PELQVLTLRSNRFCGPIGDTKTRVPF-PKLRIIDLSYNQFTGVLP 452 (705)
Q Consensus 409 ~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~ls~n~l~~~~p 452 (705)
++|+.|++++|++.+..+... ..+ ++|+.|++++|++++..+
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~--~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSC--CCCCTTCCEEECTTCCEECSGG
T ss_pred ccCCEeECCCCCCcccCHHHH--HhhhccCCEEEccCCCeecccC
Confidence 777777777777776665554 334 378888888888776543
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=6.3e-30 Score=286.86 Aligned_cols=395 Identities=13% Similarity=0.072 Sum_probs=188.7
Q ss_pred CCCCCCEEEccCCcCCCCCchHHHhcCCCC-ccEEECCCCCC-CCCCC----CCCCCCcEEEccCCcCCCCCCCCCCCCc
Q 005267 101 TQHQLDWLDLSENQIRGRIPSWMWDIGVHT-LFRLDLSRNFL-TSIDH----LPWKNLEFLTLDSNLLQGSLPNLPPHMV 174 (705)
Q Consensus 101 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~-L~~L~ls~n~l-~~~~~----~~~~~L~~L~l~~n~~~~~~~~~~~~L~ 174 (705)
.+++|++|+|++|.+++..+..+... +++ |++|++++|.- +.... .. +++|+
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~---------------------~~~L~ 167 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKA-RADDLETLKLDKCSGFTTDGLLSIVTH---------------------CRKIK 167 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHH-HGGGCCEEEEESCEEEEHHHHHHHHHH---------------------CTTCS
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHh-ccccCcEEECcCCCCcCHHHHHHHHhh---------------------CCCCC
Confidence 56677777777776665544444432 123 55555555431 00000 01 23344
Q ss_pred EEEcccCCCCCC----CcccccCCCCCcEEEcccCcCCcc----CCcccC-CCCCCEEEcCCCcCCcccchhccCCCCCC
Q 005267 175 QLSISNNSLTGE----IPSSFCNLSSIQYLYLSNNSLSGQ----IPQCLG-NSTLENLDLGMNNFQGTIPQTYAKGCNLT 245 (705)
Q Consensus 175 ~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~n~~~~~----~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 245 (705)
+|++++|.+++. ++..+..+++|++|++++|.+++. ++..+. .++|++|++++|.+.+ ++..+..+++|+
T Consensus 168 ~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~ 246 (592)
T 3ogk_B 168 TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLE 246 (592)
T ss_dssp EEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCC
T ss_pred EEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHH
Confidence 444444443322 222334556666666666665421 111111 2555555555555543 344555555555
Q ss_pred EEECcCCcCc---CCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCC-ccccCCCCCCeEec
Q 005267 246 YLRLSGNHLE---GPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP-ECLGNSTSLSFLDV 321 (705)
Q Consensus 246 ~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l 321 (705)
+|+++..... ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|.+++... ..+..+++|+.|++
T Consensus 247 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp EEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred hhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence 5555432211 11223344444555555544322 1334444444445555555444332211 12344444444444
Q ss_pred cCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccC-----------CcCCCC-CCccccCCCCCcE
Q 005267 322 GNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNG-----------NRLEGP-LPPSLVNCRHLEV 389 (705)
Q Consensus 322 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~-----------n~l~~~-~~~~l~~l~~L~~ 389 (705)
+ +.+. .+.++.....+++|++|++++ +.+++. ++.....+++|++
T Consensus 326 ~-~~~~----------------------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 326 R-NVIG----------------------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp E-GGGH----------------------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred c-CccC----------------------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 4 2111 112222334455566666662 333322 1122344667777
Q ss_pred EEccCCcCCCCcchhhhC-CCCCCEEEcc----CCcCcCCCCCC---CCCCCCCCccEEEccCCc--CcccCChHhhhhc
Q 005267 390 IDVGNNQINETFPHWLDV-LPELQVLTLR----SNRFCGPIGDT---KTRVPFPKLRIIDLSYNQ--FTGVLPIWYLNGF 459 (705)
Q Consensus 390 L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~~~~~---~~~~~~~~L~~L~ls~n~--l~~~~p~~~~~~~ 459 (705)
|+++.|++++..+..+.. +++|+.|+++ .|.+++...+. .....+++|+.|++++|. +++..+...
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~---- 458 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI---- 458 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH----
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH----
Confidence 777666666655555544 6677777775 33443321000 001235666666665433 332211111
Q ss_pred cccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccc-cchhhhcCCCCCEEecCCCcC
Q 005267 460 KAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGE-ISEVLGKLNSLKSLNISHNNL 538 (705)
Q Consensus 460 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l 538 (705)
...+++|++|++++|++++. ++..+..+++|++|+|++|.+
T Consensus 459 --------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 459 --------------------------------------GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp --------------------------------------HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred --------------------------------------HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 11156677777777777653 344456677777777777776
Q ss_pred Ccc-CCccccCCCCCCeeeCCCCcCCCcCcccc-cCCCCCCeEecccC
Q 005267 539 TGG-IPSSLRNLTELESLDLSSNKLAGRIPTQL-ASLNYLSVLNLSNN 584 (705)
Q Consensus 539 ~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N 584 (705)
++. ++..+..+++|++|+|++|+++......+ ..++.+....+..+
T Consensus 501 ~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 501 SERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp BHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 644 33344567777777777777765433333 24555555544443
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7e-27 Score=252.30 Aligned_cols=92 Identities=23% Similarity=0.274 Sum_probs=83.9
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEe
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 580 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 580 (705)
+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+
T Consensus 217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence 57788889999999888889999999999999999999998899999999999999999999988888889999999999
Q ss_pred cccCcccccCCC
Q 005267 581 LSNNQLEGPIPG 592 (705)
Q Consensus 581 ls~N~l~g~ip~ 592 (705)
+++|++.|.+..
T Consensus 297 L~~Np~~CdC~~ 308 (452)
T 3zyi_A 297 LHHNPWNCDCDI 308 (452)
T ss_dssp CCSSCEECSTTT
T ss_pred ccCCCcCCCCCc
Confidence 999999988763
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=9.5e-27 Score=250.34 Aligned_cols=91 Identities=20% Similarity=0.221 Sum_probs=84.6
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEe
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 580 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 580 (705)
+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 206 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence 67888999999999988899999999999999999999999999999999999999999999988888899999999999
Q ss_pred cccCcccccCC
Q 005267 581 LSNNQLEGPIP 591 (705)
Q Consensus 581 ls~N~l~g~ip 591 (705)
+++|++.|.+.
T Consensus 286 L~~Np~~CdC~ 296 (440)
T 3zyj_A 286 LHHNPWNCNCD 296 (440)
T ss_dssp CCSSCEECSST
T ss_pred cCCCCccCCCC
Confidence 99999998875
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=5.5e-30 Score=287.38 Aligned_cols=392 Identities=14% Similarity=0.076 Sum_probs=206.7
Q ss_pred CCCCCCEEeCCCCCCccccCcccccC-CCC-CCEEEccCCCCcceecccCcc-CCCCCCEEecCCCCCC-C----CChhc
Q 005267 28 ELVNLTFVSLSFNNFSGSVELYDFAK-LKN-LKYLILSNISLSVSTKLTVNS-SFPNLWALGLSACNIS-E----FPDIL 99 (705)
Q Consensus 28 ~l~~L~~L~Ls~n~l~~~i~~~~~~~-l~~-L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n~l~-~----lp~~l 99 (705)
.+++|++|+|++|.+++..+..+ .. +++ |++|+|++|.......++... .+++|++|++++|.+. . ++..+
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l-~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRL-AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHH-HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHH-HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 45566666666665553333322 22 223 666666655200000111111 4555555555555541 1 22233
Q ss_pred cCCCCCCEEEccCCcCCC----CCchHHHhcCCCCccEEECCCCCCCCCCC--CCCCCCcEEEccCCcCCCCCCCCCCCC
Q 005267 100 KTQHQLDWLDLSENQIRG----RIPSWMWDIGVHTLFRLDLSRNFLTSIDH--LPWKNLEFLTLDSNLLQGSLPNLPPHM 173 (705)
Q Consensus 100 ~~l~~L~~L~Ls~n~~~~----~~~~~l~~l~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~L 173 (705)
..+++|++|++++|.+++ .++..+..+ ++|++|++++|.+.+... ..+ ++|
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~~~~l~~~~~~~---------------------~~L 245 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNC--RSLVSVKVGDFEILELVGFFKAA---------------------ANL 245 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHC--TTCCEEECSSCBGGGGHHHHHHC---------------------TTC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhC--CCCcEEeccCccHHHHHHHHhhh---------------------hHH
Confidence 445555555555555542 122223333 555555555554444322 233 444
Q ss_pred cEEEcccCCCC---CCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccc-hhccCCCCCCEEE
Q 005267 174 VQLSISNNSLT---GEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIP-QTYAKGCNLTYLR 248 (705)
Q Consensus 174 ~~L~l~~n~l~---~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 248 (705)
++|+++..... ...+..+..+++|+.|+++++.. ..+|..+.. ++|++|++++|.+++... ..+..+++|++|+
T Consensus 246 ~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp CEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred HhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence 55554432211 12334455666666666666432 234444433 667777777666554333 3356677777777
Q ss_pred CcCCcCcCCCCccCCCCCcCcEEEccC-----------CcCCCCC-CccccCCCCCcEEEccCccccCCCCccccC-CCC
Q 005267 249 LSGNHLEGPLPPSLSNCVNLQVLDVGN-----------NNLSGPI-PECLGNSTRLSFLDVRNNNLSGPIPECLGN-STS 315 (705)
Q Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~ 315 (705)
++++...+.++.....+++|++|++++ +.+++.. +.....+++|++|+++.|.+++..+..+.. +++
T Consensus 325 L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 404 (592)
T 3ogk_B 325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKN 404 (592)
T ss_dssp EEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCS
T ss_pred ccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCC
Confidence 763222222333334566777777773 3443221 122334677777777777766555445544 677
Q ss_pred CCeEecc----Ccccccc-----cCccc-ccCcccEEEcCCCc--ccccccccc-cCCCCccEEEccCCcCCC-CCCccc
Q 005267 316 LSFLDVG----NNSLSGP-----IPEYL-GNSTLEVLDMRMNK--FSGSLPQTF-GKSCVLVSLKLNGNRLEG-PLPPSL 381 (705)
Q Consensus 316 L~~L~l~----~n~l~~~-----~~~~~-~~~~L~~L~l~~n~--l~~~~~~~~-~~~~~L~~L~L~~n~l~~-~~~~~l 381 (705)
|+.|+++ .|.+++. ++..+ +..+|+.|+++.|. +++..+..+ ..+++|++|++++|.+++ .++..+
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 484 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS 484 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH
T ss_pred CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH
Confidence 7777775 4555542 11112 23477777776543 444433333 346778888888888775 234455
Q ss_pred cCCCCCcEEEccCCcCCCC-cchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCC
Q 005267 382 VNCRHLEVIDVGNNQINET-FPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYN 445 (705)
Q Consensus 382 ~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n 445 (705)
.++++|++|++++|.+++. .+.....+++|+.|++++|++++.-.... ...+|.+....+..+
T Consensus 485 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l-~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM-QMARPYWNIELIPSR 548 (592)
T ss_dssp TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG-GGCCTTEEEEEECCC
T ss_pred hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH-HHhCCCcEEEEecCc
Confidence 7788888888888887654 33444568888888888888765422211 134666666655544
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.2e-27 Score=242.48 Aligned_cols=247 Identities=21% Similarity=0.263 Sum_probs=189.3
Q ss_pred cEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccC--Cc-ccCCCCCCEEEcCCCc
Q 005267 153 EFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQI--PQ-CLGNSTLENLDLGMNN 229 (705)
Q Consensus 153 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~--~~-~~~~~~L~~L~L~~n~ 229 (705)
+.++++++.++......++++++|++++|.++...+..|.++++|++|++++|.++... +. ....++|++|++++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 35666666666544445678888888888888555556788999999999999887431 33 3345899999999999
Q ss_pred CCcccchhccCCCCCCEEECcCCcCcCCCC-ccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccC-CCC
Q 005267 230 FQGTIPQTYAKGCNLTYLRLSGNHLEGPLP-PSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSG-PIP 307 (705)
Q Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~ 307 (705)
+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|
T Consensus 90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred cc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 88 466678899999999999999986554 578899999999999999998888889999999999999999986 577
Q ss_pred ccccCCCCCCeEeccCcccccccCccccc-CcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCC-C
Q 005267 308 ECLGNSTSLSFLDVGNNSLSGPIPEYLGN-STLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNC-R 385 (705)
Q Consensus 308 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~ 385 (705)
..+..+++|+.|++++|.+++..+..+.. .+|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+ +
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 248 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence 88888899999999888887766655543 367777777777776666666667777777777777776666666666 3
Q ss_pred CCcEEEccCCcCCCC
Q 005267 386 HLEVIDVGNNQINET 400 (705)
Q Consensus 386 ~L~~L~L~~n~l~~~ 400 (705)
+|++|++++|.++..
T Consensus 249 ~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 249 SLAFLNLTQNDFACT 263 (306)
T ss_dssp TCCEEECTTCCEECS
T ss_pred cCCEEEccCCCeecc
Confidence 677777777766543
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-28 Score=253.16 Aligned_cols=266 Identities=20% Similarity=0.204 Sum_probs=169.3
Q ss_pred CEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCc
Q 005267 221 ENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNN 300 (705)
Q Consensus 221 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 300 (705)
+..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------------------- 72 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-------------------- 72 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE--------------------
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc--------------------
Confidence 334444444443333444444455555555555554444445555555555555555443
Q ss_pred cccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCcc
Q 005267 301 NLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPS 380 (705)
Q Consensus 301 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 380 (705)
..+ +..+++|++|++++|.+++..+ ..+|+.|++++|.+++..+.. +++|++|++++|++++..+..
T Consensus 73 ----~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~ 139 (317)
T 3o53_A 73 ----TLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLD 139 (317)
T ss_dssp ----EEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBC
T ss_pred ----chh--hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchh
Confidence 222 4444555555555555443211 135556666666555443332 355777777777777666667
Q ss_pred ccCCCCCcEEEccCCcCCCCcchhhh-CCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhc
Q 005267 381 LVNCRHLEVIDVGNNQINETFPHWLD-VLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGF 459 (705)
Q Consensus 381 l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 459 (705)
+..+++|++|++++|++++..+..+. .+++|++|++++|++++..... .
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~-------------------------- 189 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV----V-------------------------- 189 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC----C--------------------------
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc----c--------------------------
Confidence 77777788888888877776665553 5666666666666654321100 0
Q ss_pred cccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCC
Q 005267 460 KAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLT 539 (705)
Q Consensus 460 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 539 (705)
+++|++|+|++|++++.++ .+..+++|++|+|++|+++
T Consensus 190 -----------------------------------------l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 190 -----------------------------------------FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC
T ss_pred -----------------------------------------cccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc
Confidence 4567777888888876544 4888999999999999999
Q ss_pred ccCCccccCCCCCCeeeCCCCcCC-CcCcccccCCCCCCeEeccc-CcccccCCC
Q 005267 540 GGIPSSLRNLTELESLDLSSNKLA-GRIPTQLASLNYLSVLNLSN-NQLEGPIPG 592 (705)
Q Consensus 540 ~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls~-N~l~g~ip~ 592 (705)
.+|..+..+++|+.|++++|++. +.+|..+..++.|+.+++++ +.+.|..|.
T Consensus 228 -~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp -EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred -chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 57888999999999999999998 78888899999999999994 467776553
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5e-26 Score=244.73 Aligned_cols=226 Identities=20% Similarity=0.185 Sum_probs=132.5
Q ss_pred CCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEcc
Q 005267 196 SIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVG 274 (705)
Q Consensus 196 ~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (705)
+++.|++++|.+.+..+..+.. ++|++|++++|.+++..+..|.++++|++|+|++|+++...+..|..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 3444444444444333333333 444444444444444445556666666666666666664444456666666666666
Q ss_pred CCcCCCCCCccccCCCCCcEEEccCcc-ccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccc
Q 005267 275 NNNLSGPIPECLGNSTRLSFLDVRNNN-LSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSL 353 (705)
Q Consensus 275 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 353 (705)
+|.+....+..|..+++|++|++++|. +....+..|.++++|+.|++++|.++ .+|......+|+.|++++|++++..
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEEC
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCccC
Confidence 666665555556666666666666633 33333345666666666666666665 3344333446666666666666666
Q ss_pred cccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCc
Q 005267 354 PQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFC 422 (705)
Q Consensus 354 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 422 (705)
|..|..+++|+.|++++|++++..+..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|++.
T Consensus 224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 666666667777777777766666666666667777777777666666666666666666666666553
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.5e-26 Score=245.97 Aligned_cols=245 Identities=18% Similarity=0.171 Sum_probs=125.9
Q ss_pred cEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCc
Q 005267 153 EFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQG 232 (705)
Q Consensus 153 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~ 232 (705)
..+++++..++......++++++|++++|.+++..+..|.++++|++|++++|.++ +
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-----------------------~ 113 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-----------------------Q 113 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-----------------------E
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-----------------------C
Confidence 34555544444332223444445555555444444444444444444444444444 3
Q ss_pred ccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCc-cccCCCCcccc
Q 005267 233 TIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNN-NLSGPIPECLG 311 (705)
Q Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~ 311 (705)
..+..|.++++|++|+|++|.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++| .+....+..|.
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 193 (452)
T 3zyi_A 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc
Confidence 33444445555555555555555444444555555555555555555444444555555555555552 22222233455
Q ss_pred CCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEE
Q 005267 312 NSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVID 391 (705)
Q Consensus 312 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 391 (705)
.+++|+.|++++|.+++ +|......+|+.|++++|.+++..|..|..+++|+.|++++|++++..+..|.++++|+.|+
T Consensus 194 ~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272 (452)
T ss_dssp TCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCCEEECCCCcccc-cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence 55566666666665553 23333333555555555555555555566666666666666666655555566666666666
Q ss_pred ccCCcCCCCcchhhhCCCCCCEEEccCCcC
Q 005267 392 VGNNQINETFPHWLDVLPELQVLTLRSNRF 421 (705)
Q Consensus 392 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 421 (705)
+++|++++..+..+..+++|+.|+|++|++
T Consensus 273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 666666555555555555555555555554
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=8e-27 Score=235.65 Aligned_cols=181 Identities=22% Similarity=0.205 Sum_probs=83.5
Q ss_pred CCCEEEcCCCcCCcccchhccCCCCCCEEECcCCc-CcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEc
Q 005267 219 TLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNH-LEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDV 297 (705)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 297 (705)
+|++|++++|.+++..|..|..+++|++|++++|. +....|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 136 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEEC
Confidence 33333333333333334444444444444444443 43333444444444444444444444444444444444445555
Q ss_pred cCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCC
Q 005267 298 RNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPL 377 (705)
Q Consensus 298 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 377 (705)
++|.+++..+..+..+++|+.|++++|.+++ ..+..+..+++|++|++++|.+++..
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (285)
T 1ozn_A 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISS-----------------------VPERAFRGLHSLDRLLLHQNRVAHVH 193 (285)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-----------------------ECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCcccccCHhHhccCCCccEEECCCCcccc-----------------------cCHHHhcCccccCEEECCCCcccccC
Confidence 4444444433344444444444444444432 22333444444444444444444444
Q ss_pred CccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCc
Q 005267 378 PPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFC 422 (705)
Q Consensus 378 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 422 (705)
|..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 194 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 444445555555555555555444444555555555555555544
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.5e-28 Score=251.38 Aligned_cols=249 Identities=21% Similarity=0.238 Sum_probs=172.7
Q ss_pred CCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccc-cccCcccc--------cCcccEEEcCCCcccccccccc--
Q 005267 289 STRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLS-GPIPEYLG--------NSTLEVLDMRMNKFSGSLPQTF-- 357 (705)
Q Consensus 289 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~~-- 357 (705)
.++|+.+++++|.+ .+|..+... |+.|++++|.+. ..++.... ..+|++|++++|++++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555555 334333322 555555555552 23333332 3466666666666666666554
Q ss_pred cCCCCccEEEccCCcCCCCCCccccCC-----CCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCC--CCCCC
Q 005267 358 GKSCVLVSLKLNGNRLEGPLPPSLVNC-----RHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPI--GDTKT 430 (705)
Q Consensus 358 ~~~~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~ 430 (705)
..+++|++|++++|++++. |..+..+ ++|++|++++|++++..+..+..+++|++|++++|++.+.+ +....
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 6677777777777777765 6666555 77788888888777777777777788888888887765542 11222
Q ss_pred CCCCCCccEEEccCCcCccc--CChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEE
Q 005267 431 RVPFPKLRIIDLSYNQFTGV--LPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATID 508 (705)
Q Consensus 431 ~~~~~~L~~L~ls~n~l~~~--~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 508 (705)
...+++|++|++++|++++. ++... ...+++|++|+
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------------------------------~~~l~~L~~L~ 234 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSAL------------------------------------------AAARVQLQGLD 234 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHH------------------------------------------HHTTCCCSEEE
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHH------------------------------------------HhcCCCCCEEE
Confidence 24578888888888888732 11111 11267899999
Q ss_pred ccCCccccccc-hhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCccc
Q 005267 509 LSSNRFQGEIS-EVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 587 (705)
Q Consensus 509 Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 587 (705)
+++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++|++++|+++
T Consensus 235 Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred CCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 99999998775 45677899999999999999 7788776 8999999999999976 66 899999999999999998
Q ss_pred cc
Q 005267 588 GP 589 (705)
Q Consensus 588 g~ 589 (705)
+.
T Consensus 310 ~~ 311 (312)
T 1wwl_A 310 DS 311 (312)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.5e-26 Score=236.21 Aligned_cols=232 Identities=22% Similarity=0.276 Sum_probs=145.8
Q ss_pred CCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEEC
Q 005267 171 PHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRL 249 (705)
Q Consensus 171 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 249 (705)
++++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..++. ++|++|++++|.++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45666666666665 45555555666666666666655 44444433 45555555555544 34444444445555555
Q ss_pred cCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccc
Q 005267 250 SGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGP 329 (705)
Q Consensus 250 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 329 (705)
++|++.+.+|..+... ..+..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++.
T Consensus 158 ~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 158 RACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp EEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC
T ss_pred CCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC
Confidence 4444444444433220 00011233666777777777666 5566666677777777777776643
Q ss_pred cCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCC
Q 005267 330 IPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLP 409 (705)
Q Consensus 330 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 409 (705)
.+......+|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|.++..++
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence 33333334677777777777777777777888888888888888888888888888888888888888888888888888
Q ss_pred CCCEEEccCCcC
Q 005267 410 ELQVLTLRSNRF 421 (705)
Q Consensus 410 ~L~~L~L~~n~l 421 (705)
+|+.+++..+.+
T Consensus 302 ~L~~l~l~~~~~ 313 (328)
T 4fcg_A 302 ANCIILVPPHLQ 313 (328)
T ss_dssp TTCEEECCGGGS
T ss_pred CceEEeCCHHHH
Confidence 888888877655
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.1e-26 Score=234.51 Aligned_cols=222 Identities=21% Similarity=0.204 Sum_probs=166.3
Q ss_pred cEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCc-C
Q 005267 153 EFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNN-F 230 (705)
Q Consensus 153 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~-l 230 (705)
+.++++++.++......++++++|++++|.+++..+..|.++++|++|++++|.+++..|..+.. ++|++|++++|. +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 45666666666444444678888888888888777778888999999999999888777777766 889999999997 7
Q ss_pred CcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccc
Q 005267 231 QGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECL 310 (705)
Q Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 310 (705)
....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence 77778889999999999999999998778889999999999999999987777778899999999999999987766678
Q ss_pred cCCCCCCeEeccCcccccccCccccc-CcccEEEcCCCcccccccccccCCCCccEEEccCCcCC
Q 005267 311 GNSTSLSFLDVGNNSLSGPIPEYLGN-STLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLE 374 (705)
Q Consensus 311 ~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 374 (705)
..+++|+.|++++|.+++..|..+.. .+|+.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 88888888888888776554444332 24444444444444433333444444444444444443
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.5e-26 Score=235.12 Aligned_cols=231 Identities=21% Similarity=0.274 Sum_probs=156.7
Q ss_pred CCCCCcEEEccCCcCCCCCCCC---CCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEE
Q 005267 148 PWKNLEFLTLDSNLLQGSLPNL---PPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENL 223 (705)
Q Consensus 148 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L 223 (705)
...+++.|++++|.++ .+|.. +++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..++. ++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3478999999999998 45543 789999999999999 88999999999999999999998 77877766 999999
Q ss_pred EcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCcccc
Q 005267 224 DLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLS 303 (705)
Q Consensus 224 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 303 (705)
++++|++.+.+|..+... ..+..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 999999988888776540 01122334444444444444444 34444444444444444444444
Q ss_pred CCCCccccCCCCCCeEeccCcccccccCccccc-CcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCcccc
Q 005267 304 GPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGN-STLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLV 382 (705)
Q Consensus 304 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 382 (705)
+ +|..+..+++|+.|++++|.+.+.+|..++. .+|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 2 2333444555555555555544444443332 2555555555555556666677777777777777777777777778
Q ss_pred CCCCCcEEEccCCcCC
Q 005267 383 NCRHLEVIDVGNNQIN 398 (705)
Q Consensus 383 ~l~~L~~L~L~~n~l~ 398 (705)
++++|+.+++..+.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 8888888877766553
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.4e-25 Score=246.03 Aligned_cols=264 Identities=27% Similarity=0.313 Sum_probs=166.5
Q ss_pred CCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCccCCCCCCEEecCCCCCCCCChhccCCCCCCEEEc
Q 005267 31 NLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPDILKTQHQLDWLDL 110 (705)
Q Consensus 31 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 110 (705)
++++|++++|.++ .+|..++ ++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~---~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT---SLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS---CCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC---CCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 3455555555554 4454431 45555555555332 2222 34555555555555555554 4455566666
Q ss_pred cCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCccc
Q 005267 111 SENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSS 190 (705)
Q Consensus 111 s~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 190 (705)
++|.+++ +|. .. ++|+.|++++|.+++++. .+++|++|++++|.+++ +|..+++|+.|++++|.+++ +|
T Consensus 109 s~N~l~~-l~~---~l--~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~-l~-- 177 (622)
T 3g06_A 109 FSNPLTH-LPA---LP--SGLCKLWIFGNQLTSLPV-LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTS-LP-- 177 (622)
T ss_dssp CSCCCCC-CCC---CC--TTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CC--
T ss_pred cCCcCCC-CCC---CC--CCcCEEECCCCCCCcCCC-CCCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCC-Cc--
Confidence 6655553 333 12 556666666666555433 34666666666666664 34456677777777777774 44
Q ss_pred ccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcE
Q 005267 191 FCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQV 270 (705)
Q Consensus 191 ~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 270 (705)
..+++|+.|++++|.+++ +|.. .++|+.|++++|.++. +|. .+++|++|++++|.+++ +| ..+++|+.
T Consensus 178 -~~~~~L~~L~Ls~N~l~~-l~~~--~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~ 245 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLAS-LPTL--PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKE 245 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCE
T ss_pred -ccCCCCcEEECCCCCCCC-CCCc--cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcE
Confidence 345677777777777764 3332 2677888888887773 333 24678888888888874 45 45678888
Q ss_pred EEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCccc
Q 005267 271 LDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYL 334 (705)
Q Consensus 271 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 334 (705)
|++++|.++. +|. .+++|+.|++++|.++ .+|..+.++++|+.|++++|.+++..+..+
T Consensus 246 L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 246 LMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred EECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 8888888873 554 5678888888888888 567778888888888888888887766544
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=4e-25 Score=244.31 Aligned_cols=261 Identities=26% Similarity=0.341 Sum_probs=136.6
Q ss_pred CCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEcc
Q 005267 219 TLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVR 298 (705)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 298 (705)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 4667777777766 4454443 56777777777766 3444 45667777777776663 343 45666666666
Q ss_pred CccccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCC
Q 005267 299 NNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLP 378 (705)
Q Consensus 299 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 378 (705)
+|.+++. |. .+++|+.|++++|++++ +|.. ..+|++|++++|.+++. |. ...+|+.|++++|.+++ +|
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~--l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~ 177 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL--PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP 177 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC--CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc
Confidence 6666643 22 34556666666666653 2322 13555555555555432 21 12345555555555543 22
Q ss_pred ccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhh
Q 005267 379 PSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNG 458 (705)
Q Consensus 379 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~ 458 (705)
..+++|+.|++++|++++..+ .++ +|+.|++++|.++. +|..
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~l~~----~~~--------------------------~L~~L~L~~N~l~~-l~~~---- 219 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLASLPT----LPS--------------------------ELYKLWAYNNRLTS-LPAL---- 219 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSCCCC----CCT--------------------------TCCEEECCSSCCSS-CCCC----
T ss_pred ---ccCCCCcEEECCCCCCCCCCC----ccc--------------------------hhhEEECcCCcccc-cCCC----
Confidence 233445555555554443211 123 45555555554432 1100
Q ss_pred ccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcC
Q 005267 459 FKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNL 538 (705)
Q Consensus 459 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 538 (705)
+++|+.|+|++|++++ +| ..+++|++|+|++|++
T Consensus 220 ------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L 253 (622)
T 3g06_A 220 ------------------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRL 253 (622)
T ss_dssp ------------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC
T ss_pred ------------------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCC
Confidence 2445555555555554 22 2345555666666655
Q ss_pred CccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCC
Q 005267 539 TGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 591 (705)
Q Consensus 539 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 591 (705)
+ .+|. .+++|+.|+|++|+++ .+|..+.++++|+.|++++|++++.+|
T Consensus 254 ~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 254 T-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp S-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred C-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 5 2333 3455556666666555 445555556666666666666555544
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.3e-27 Score=256.08 Aligned_cols=234 Identities=22% Similarity=0.221 Sum_probs=156.9
Q ss_pred cCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCC
Q 005267 267 NLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRM 346 (705)
Q Consensus 267 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 346 (705)
+|++|++++|.+++..|..|+.+++|++|+|++|.+++..| +..+++|+.|++++|.+++..+. .+|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcC
Confidence 45555555555555444555555555555555555554333 55556666666666655532221 4566666666
Q ss_pred CcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhh-CCCCCCEEEccCCcCcCCC
Q 005267 347 NKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLD-VLPELQVLTLRSNRFCGPI 425 (705)
Q Consensus 347 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~ 425 (705)
|.+++..+.. +++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++..
T Consensus 109 N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 109 NNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 6666554432 35677788888888777777777778888888888888777666664 5666666666666654331
Q ss_pred CCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhcccc
Q 005267 426 GDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFA 505 (705)
Q Consensus 426 ~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 505 (705)
+.. . +++|+
T Consensus 186 ~~~----~-------------------------------------------------------------------l~~L~ 194 (487)
T 3oja_A 186 GQV----V-------------------------------------------------------------------FAKLK 194 (487)
T ss_dssp CCC----C-------------------------------------------------------------------CTTCC
T ss_pred ccc----c-------------------------------------------------------------------CCCCC
Confidence 110 1 45677
Q ss_pred EEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCC-CcCcccccCCCCCCeEecc
Q 005267 506 TIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLA-GRIPTQLASLNYLSVLNLS 582 (705)
Q Consensus 506 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls 582 (705)
.|+|++|.+++.+|. +..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 195 ~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 195 TLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 777777777765544 7888899999999999984 6777888899999999999888 6777778888888888876
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.6e-27 Score=241.74 Aligned_cols=267 Identities=20% Similarity=0.188 Sum_probs=182.2
Q ss_pred CCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEcc
Q 005267 196 SIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVG 274 (705)
Q Consensus 196 ~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (705)
+++..+++.+.+.......+.. ++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 4556677777665444444444 799999999999999888999999999999999999986544 8889999999999
Q ss_pred CCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCccccccc
Q 005267 275 NNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLP 354 (705)
Q Consensus 275 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 354 (705)
+|.+++.. ..++|++|++++|.+++..+.. +++ |+.|++++|++++..+
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~-----------------------L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQG-----------------------KKNIYLANNKITMLRD 137 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSS-----------------------CEEEECCSSCCCSGGG
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCC-----------------------CCEEECCCCCCCCccc
Confidence 99887432 2366777777777766443221 334 4455555555554445
Q ss_pred ccccCCCCccEEEccCCcCCCCCCccc-cCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCC
Q 005267 355 QTFGKSCVLVSLKLNGNRLEGPLPPSL-VNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVP 433 (705)
Q Consensus 355 ~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 433 (705)
..+..+++|++|++++|.+++..+..+ ..+++|++|++++|++++..+ ...+++|++|++++|++.+..+. + ..
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~--~~ 212 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-F--QS 212 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-G--GG
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-h--cc
Confidence 555566667777777776666555544 356777777777777765522 22467777777777766432111 0 11
Q ss_pred CCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCc
Q 005267 434 FPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNR 513 (705)
Q Consensus 434 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 513 (705)
+++|+.|+|++|+
T Consensus 213 -------------------------------------------------------------------l~~L~~L~L~~N~ 225 (317)
T 3o53_A 213 -------------------------------------------------------------------AAGVTWISLRNNK 225 (317)
T ss_dssp -------------------------------------------------------------------GTTCSEEECTTSC
T ss_pred -------------------------------------------------------------------cCcccEEECcCCc
Confidence 4566677777777
Q ss_pred cccccchhhhcCCCCCEEecCCCcCC-ccCCccccCCCCCCeeeCCCC-cCCCcCcc
Q 005267 514 FQGEISEVLGKLNSLKSLNISHNNLT-GGIPSSLRNLTELESLDLSSN-KLAGRIPT 568 (705)
Q Consensus 514 l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~ 568 (705)
+++ +|..+..+++|+.|++++|.++ +.+|..+..++.|+.|++++| .+.+..|.
T Consensus 226 l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 226 LVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 763 4566777888888888888887 677788888888888888844 55555443
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=8.9e-27 Score=238.28 Aligned_cols=248 Identities=21% Similarity=0.233 Sum_probs=180.1
Q ss_pred ccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCC-cccchhcc-------CCCCCCEEECcCCcCcCCCCccC
Q 005267 191 FCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQ-GTIPQTYA-------KGCNLTYLRLSGNHLEGPLPPSL 262 (705)
Q Consensus 191 ~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~ 262 (705)
++..++|++|++++|.+ .+|..+.. .|+.|++++|.+. ..+|..+. ++++|++|++++|.+++.+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD-IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH-HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc--ccHHHHHH-HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 44556677777777776 44543322 2677777777763 34555444 67788888888888887777765
Q ss_pred --CCCCcCcEEEccCCcCCCCCCccccCC-----CCCcEEEccCccccCCCCccccCCCCCCeEeccCccccccc--C-c
Q 005267 263 --SNCVNLQVLDVGNNNLSGPIPECLGNS-----TRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPI--P-E 332 (705)
Q Consensus 263 --~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~ 332 (705)
..+++|++|++++|.+++. |..++.+ ++|++|++++|.+++..+..+..+++|++|++++|++.+.+ + .
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 7788888888888888866 7666666 78888888888888777778888888888888888876542 2 2
Q ss_pred c--cccCcccEEEcCCCcccc---cccccccCCCCccEEEccCCcCCCCCC-ccccCCCCCcEEEccCCcCCCCcchhhh
Q 005267 333 Y--LGNSTLEVLDMRMNKFSG---SLPQTFGKSCVLVSLKLNGNRLEGPLP-PSLVNCRHLEVIDVGNNQINETFPHWLD 406 (705)
Q Consensus 333 ~--~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 406 (705)
. ....+|++|++++|++++ .....+..+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 2 233488888888888873 222445677888888888888887664 45667788999999999887 4555554
Q ss_pred CCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcc
Q 005267 407 VLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTG 449 (705)
Q Consensus 407 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 449 (705)
++|++|++++|++++. |. + ..+++|++|++++|++++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~--~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-P--DELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-T--TTSCEEEEEECTTCTTTC
T ss_pred --CCceEEECCCCCCCCC-hh-H--hhCCCCCEEeccCCCCCC
Confidence 7888999999988876 33 2 567889999999998875
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.2e-24 Score=215.44 Aligned_cols=210 Identities=21% Similarity=0.205 Sum_probs=168.7
Q ss_pred cccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEcc
Q 005267 338 TLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLR 417 (705)
Q Consensus 338 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 417 (705)
++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 57777777777776666677778888888888888877666678888888888888888887777778888888888888
Q ss_pred CCcCcCCCCCCCCCCCCCCccEEEccCCcCccc-CChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHH
Q 005267 418 SNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGV-LPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQ 496 (705)
Q Consensus 418 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (705)
+|++.+..+..+ ..+++|++|++++|.+++. +|..+
T Consensus 109 ~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~~----------------------------------------- 145 (276)
T 2z62_A 109 ETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYF----------------------------------------- 145 (276)
T ss_dssp TSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGGG-----------------------------------------
T ss_pred CCCccccCchhc--ccCCCCCEEECcCCccceecCchhh-----------------------------------------
Confidence 888876655443 5678888888888888753 34332
Q ss_pred HhhhhccccEEEccCCccccccchhhhcCCCCC----EEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccC
Q 005267 497 MERILTTFATIDLSSNRFQGEISEVLGKLNSLK----SLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLAS 572 (705)
Q Consensus 497 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 572 (705)
..+++|++|++++|++++..+..+..+++|+ +|++++|.+++..+..+. ..+|+.|++++|++++..+..+..
T Consensus 146 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 146 --SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp --GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTT
T ss_pred --ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcc
Confidence 1167899999999999988888888777777 899999999976666655 458999999999999887778899
Q ss_pred CCCCCeEecccCcccccCCCC
Q 005267 573 LNYLSVLNLSNNQLEGPIPGG 593 (705)
Q Consensus 573 l~~L~~L~ls~N~l~g~ip~~ 593 (705)
+++|++|++++|++.|.+|.-
T Consensus 223 l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCSCCEEECCSSCBCCCTTTT
T ss_pred cccccEEEccCCcccccCCch
Confidence 999999999999999999854
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=9.4e-24 Score=212.00 Aligned_cols=225 Identities=22% Similarity=0.184 Sum_probs=130.3
Q ss_pred EEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcc
Q 005267 155 LTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGT 233 (705)
Q Consensus 155 L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~ 233 (705)
++..+..++......++++++|++++|.+++..+..|.++++|++|++++|.+++..+..+.. ++|++|++++|.+++.
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 333444444332233556777777777777655556777777777777777766554444443 5666666666666655
Q ss_pred cchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCC-CCccccCCCCCcEEEccCccccCCCCccccC
Q 005267 234 IPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGP-IPECLGNSTRLSFLDVRNNNLSGPIPECLGN 312 (705)
Q Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 312 (705)
.+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..++.+++|++|++++|.+++..+..+..
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 555566666666666666666554444555566666666666655542 3555555555555555555555444444444
Q ss_pred CCCCCeEeccCcccccccCcccccCccc-EEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEE
Q 005267 313 STSLSFLDVGNNSLSGPIPEYLGNSTLE-VLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVID 391 (705)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 391 (705)
+++|+. +. .|++++|.+++..+..+.. .+|++|++++|++++..+..|..+++|+.|+
T Consensus 172 l~~L~~--------------------l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 172 LHQMPL--------------------LNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp HHTCTT--------------------CCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred hhhccc--------------------cceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEE
Confidence 444431 11 4555555555444443333 3577777777777665555567777777777
Q ss_pred ccCCcCCCC
Q 005267 392 VGNNQINET 400 (705)
Q Consensus 392 L~~n~l~~~ 400 (705)
+++|+++..
T Consensus 231 l~~N~~~c~ 239 (276)
T 2z62_A 231 LHTNPWDCS 239 (276)
T ss_dssp CCSSCBCCC
T ss_pred ccCCccccc
Confidence 777777654
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.5e-25 Score=240.15 Aligned_cols=236 Identities=21% Similarity=0.235 Sum_probs=187.2
Q ss_pred CCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEEC
Q 005267 170 PPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRL 249 (705)
Q Consensus 170 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 249 (705)
+++|++|++++|.+++..|..|+.+++|++|++++|.+++..| .-..++|++|++++|.+++..+ .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 3577888888888887777888888999999999988876555 3333888888888888875433 378899999
Q ss_pred cCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCcccc-CCCCCCeEeccCccccc
Q 005267 250 SGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLG-NSTSLSFLDVGNNSLSG 328 (705)
Q Consensus 250 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~ 328 (705)
++|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99988865443 457889999999999888888888888999999999998887777775 78889999999998886
Q ss_pred ccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCC-CCcchhhhC
Q 005267 329 PIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQIN-ETFPHWLDV 407 (705)
Q Consensus 329 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~ 407 (705)
. +......+|+.|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|.++..
T Consensus 184 ~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 184 V-KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp E-ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred c-cccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 5 333345688888888888886544 47788888899999888885 5667888888899999988887 566777777
Q ss_pred CCCCCEEEcc
Q 005267 408 LPELQVLTLR 417 (705)
Q Consensus 408 l~~L~~L~L~ 417 (705)
++.|+.++++
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 8877777775
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=8e-27 Score=261.76 Aligned_cols=375 Identities=14% Similarity=0.128 Sum_probs=196.7
Q ss_pred CCCCcEEEcccCCCCCCCccccc-CCCCCcEEEcccC-cCCcc-CCccc-CCCCCCEEEcCCCcCCcccchhcc----CC
Q 005267 170 PPHMVQLSISNNSLTGEIPSSFC-NLSSIQYLYLSNN-SLSGQ-IPQCL-GNSTLENLDLGMNNFQGTIPQTYA----KG 241 (705)
Q Consensus 170 ~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~ls~n-~~~~~-~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~----~l 241 (705)
.++|++|++++|.+++..+..+. .+++|++|++++| .++.. ++... ..++|++|++++|.+++..+..+. .+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 34566666666655544444443 4566666666665 33221 22222 235666666666665544333332 45
Q ss_pred CCCCEEECcCCc--CcC-CCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCcc-------ccCCCCcccc
Q 005267 242 CNLTYLRLSGNH--LEG-PLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNN-------LSGPIPECLG 311 (705)
Q Consensus 242 ~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~ 311 (705)
++|++|++++|. +.. .++..+..+++|++|++++|...+.++..+..+++|++|++..+. +.+ ++..+.
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~ 262 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALS 262 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHh
Confidence 566666666665 110 011112345666666666662222255555566666666644332 222 223556
Q ss_pred CCCCCCeE-eccCcccccccCccc-ccCcccEEEcCCCccccccc-ccccCCCCccEEEccCCcCCCC-CCccccCCCCC
Q 005267 312 NSTSLSFL-DVGNNSLSGPIPEYL-GNSTLEVLDMRMNKFSGSLP-QTFGKSCVLVSLKLNGNRLEGP-LPPSLVNCRHL 387 (705)
Q Consensus 312 ~l~~L~~L-~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L 387 (705)
++++|+.| .+.+... +.++... ...+|+.|++++|.+++... ..+..+++|++|++++| +... ++.....+++|
T Consensus 263 ~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDL 340 (594)
T ss_dssp TCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred cCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence 66667666 3333221 1222222 23467777777776554322 23456677777777766 3321 22222346777
Q ss_pred cEEEccC---------CcCCCCcchhhh-CCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEcc--C----CcCcccC
Q 005267 388 EVIDVGN---------NQINETFPHWLD-VLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLS--Y----NQFTGVL 451 (705)
Q Consensus 388 ~~L~L~~---------n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls--~----n~l~~~~ 451 (705)
+.|++++ +.+++.....+. .+++|+.|.+..|.+++...... ...+++|+.|+++ + +.+++..
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l-~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI-ARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH-HHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH-HhhCCCcceeEeecccCCCcccccCCc
Confidence 7777733 344433222232 36777777766666653221111 0135677777777 2 2332111
Q ss_pred ChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhc-CCCCCE
Q 005267 452 PIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGK-LNSLKS 530 (705)
Q Consensus 452 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~ 530 (705)
....+. .....+++|+.|+|++ .+++..+..++. +++|++
T Consensus 420 ~~~~~~--------------------------------------~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~ 460 (594)
T 2p1m_B 420 LDIGFG--------------------------------------AIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEM 460 (594)
T ss_dssp THHHHH--------------------------------------HHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCE
T ss_pred hhhHHH--------------------------------------HHHhhCCCccEEeecC-cccHHHHHHHHHhchhccE
Confidence 000000 0112256777788866 666555555554 777888
Q ss_pred EecCCCcCCccCCccc-cCCCCCCeeeCCCCcCCCcCcc-cccCCCCCCeEecccCccc
Q 005267 531 LNISHNNLTGGIPSSL-RNLTELESLDLSSNKLAGRIPT-QLASLNYLSVLNLSNNQLE 587 (705)
Q Consensus 531 L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~ 587 (705)
|+|++|.+++..+..+ ..+++|++|+|++|+++...+. ....+++|++|++++|+++
T Consensus 461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 8888887766555444 5577788888888877544433 3344677888888887764
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.1e-23 Score=207.33 Aligned_cols=186 Identities=24% Similarity=0.282 Sum_probs=129.7
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEE
Q 005267 362 VLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIID 441 (705)
Q Consensus 362 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 441 (705)
++++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|++++|++.+..+..+ ..+++|++|+
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~ 115 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF--DQLVNLAELR 115 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTT--TTCSSCCEEE
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHc--ccccCCCEEE
Confidence 34555555555554444445555555555555555554444444555555555555555544333222 3455666666
Q ss_pred ccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchh
Q 005267 442 LSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEV 521 (705)
Q Consensus 442 ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 521 (705)
+++|++++..+..+ ..+++|++|+|++|.+++..+..
T Consensus 116 l~~n~l~~~~~~~~-------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~ 152 (270)
T 2o6q_A 116 LDRNQLKSLPPRVF-------------------------------------------DSLTKLTYLSLGYNELQSLPKGV 152 (270)
T ss_dssp CCSSCCCCCCTTTT-------------------------------------------TTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCccCeeCHHHh-------------------------------------------CcCcCCCEEECCCCcCCccCHhH
Confidence 66666554333211 11678888899999988777777
Q ss_pred hhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCCC
Q 005267 522 LGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG 592 (705)
Q Consensus 522 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 592 (705)
++.+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.+.++.
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 89999999999999999988888899999999999999999987777899999999999999999998863
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=9e-27 Score=261.35 Aligned_cols=437 Identities=15% Similarity=0.116 Sum_probs=238.3
Q ss_pred CEEecCCCCCCCCChhccCCCCCCEEEccCCcCCC---CCc--------hH----HHhcCCCCccEEECCCCCCCCCCC-
Q 005267 83 WALGLSACNISEFPDILKTQHQLDWLDLSENQIRG---RIP--------SW----MWDIGVHTLFRLDLSRNFLTSIDH- 146 (705)
Q Consensus 83 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~~~~---~~~--------~~----l~~l~~~~L~~L~ls~n~l~~~~~- 146 (705)
+.++++.+.....+..+..+++|++|+++++.... ..| .+ ...+ ++|++|++++|.+++...
T Consensus 46 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~--~~L~~L~L~~~~~~~~~~~ 123 (594)
T 2p1m_B 46 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY--TWLEEIRLKRMVVTDDCLE 123 (594)
T ss_dssp CEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC--TTCCEEEEESCBCCHHHHH
T ss_pred eEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhC--CCCCeEEeeCcEEcHHHHH
Confidence 45666655433323456677888999988875221 111 11 1122 566666666665543322
Q ss_pred ---CCCCCCcEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCC-CcccccCCCCCcEEEcccCcCCccCCccc-----CC
Q 005267 147 ---LPWKNLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGE-IPSSFCNLSSIQYLYLSNNSLSGQIPQCL-----GN 217 (705)
Q Consensus 147 ---~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ls~n~~~~~~~~~~-----~~ 217 (705)
..+++|++|++++|. .++.. ++..+.++++|++|++++|.+++..+..+ ..
T Consensus 124 ~l~~~~~~L~~L~L~~~~--------------------~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 124 LIAKSFKNFKVLVLSSCE--------------------GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp HHHHHCTTCCEEEEESCE--------------------EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred HHHHhCCCCcEEeCCCcC--------------------CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 134455555554441 22211 22223345556666665555443332222 11
Q ss_pred CCCCEEEcCCCc--CCc-ccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCc-------CCCCCCcccc
Q 005267 218 STLENLDLGMNN--FQG-TIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNN-------LSGPIPECLG 287 (705)
Q Consensus 218 ~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~ 287 (705)
++|++|++++|. +.. .++..+..+++|++|++++|...+.++..+..+++|+.|+++.+. +.+ ++..+.
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~ 262 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALS 262 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHh
Confidence 456666666554 211 111222335666666666652221245555556666666654432 111 223455
Q ss_pred CCCCCcEE-EccCccccCCCCccccCCCCCCeEeccCcccccccCcc-c-ccCcccEEEcCCCcccc-cccccccCCCCc
Q 005267 288 NSTRLSFL-DVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEY-L-GNSTLEVLDMRMNKFSG-SLPQTFGKSCVL 363 (705)
Q Consensus 288 ~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~-~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L 363 (705)
++++|+.+ .+.+... +.++..+..+++|+.|++++|.+++..... . ..++|+.|++++| +.. .++.....+++|
T Consensus 263 ~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDL 340 (594)
T ss_dssp TCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred cCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence 66666666 3332221 123333445566667777666654322211 1 2236677777666 322 122223346777
Q ss_pred cEEEccC---------CcCCCCCCccc-cCCCCCcEEEccCCcCCCCcchhhh-CCCCCCEEEcc--C----CcCcCCCC
Q 005267 364 VSLKLNG---------NRLEGPLPPSL-VNCRHLEVIDVGNNQINETFPHWLD-VLPELQVLTLR--S----NRFCGPIG 426 (705)
Q Consensus 364 ~~L~L~~---------n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~~ 426 (705)
++|++.+ +.+++.....+ ..+++|+.|+++.|.+++.....+. .+++|+.|+++ + +.+++...
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence 7777733 33433222222 3478888888888888776655554 58888888888 3 33332110
Q ss_pred CCC---CCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhcc
Q 005267 427 DTK---TRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTT 503 (705)
Q Consensus 427 ~~~---~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 503 (705)
+.. ....+++|+.|++++ .+++..+... ...+++
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l------------------------------------------~~~~~~ 457 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI------------------------------------------GTYAKK 457 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH------------------------------------------HHHCTT
T ss_pred hhHHHHHHhhCCCccEEeecC-cccHHHHHHH------------------------------------------HHhchh
Confidence 000 013467899999976 5543222111 112678
Q ss_pred ccEEEccCCccccccchhh-hcCCCCCEEecCCCcCCccCCc-cccCCCCCCeeeCCCCcCCCcCcccc-cCCCCCCeEe
Q 005267 504 FATIDLSSNRFQGEISEVL-GKLNSLKSLNISHNNLTGGIPS-SLRNLTELESLDLSSNKLAGRIPTQL-ASLNYLSVLN 580 (705)
Q Consensus 504 L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ 580 (705)
|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|+.|++++|+++......+ ..++.|+...
T Consensus 458 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~ 537 (594)
T 2p1m_B 458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEV 537 (594)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEE
T ss_pred ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 9999999999987666555 7799999999999999765444 44568999999999999865444444 4577777666
Q ss_pred cccCccc
Q 005267 581 LSNNQLE 587 (705)
Q Consensus 581 ls~N~l~ 587 (705)
+..+.-.
T Consensus 538 ~~~~~~~ 544 (594)
T 2p1m_B 538 IDERGAP 544 (594)
T ss_dssp ECSSSCG
T ss_pred ecCCCcc
Confidence 6655433
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.8e-23 Score=213.53 Aligned_cols=229 Identities=22% Similarity=0.243 Sum_probs=173.1
Q ss_pred CCCeEeccCcccccc----cCcccccCcccEEEcCCCcccccccccc--cCCCCccEEEccCCcCCCCCC----ccccCC
Q 005267 315 SLSFLDVGNNSLSGP----IPEYLGNSTLEVLDMRMNKFSGSLPQTF--GKSCVLVSLKLNGNRLEGPLP----PSLVNC 384 (705)
Q Consensus 315 ~L~~L~l~~n~l~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~----~~l~~l 384 (705)
.++.+.+.++.+... +.......+|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 355666666554321 1122233468888888888888888777 788889999999998887554 345578
Q ss_pred CCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCC--CCCCCCCCCCCCccEEEccCCcCcccCChHhhhhcccc
Q 005267 385 RHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGP--IGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAM 462 (705)
Q Consensus 385 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l 462 (705)
++|++|++++|++.+..+..+..+++|++|++++|++.+. .+.......+++|++|++++|+++.. +...
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~------- 216 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVC------- 216 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHH-------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHH-------
Confidence 8999999999999888888888899999999999987653 22222224678999999999988632 1110
Q ss_pred ccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcC---CCCCEEecCCCcCC
Q 005267 463 MRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKL---NSLKSLNISHNNLT 539 (705)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~Ls~N~l~ 539 (705)
......+++|++|||++|++++..|..+..+ ++|++|+|++|+++
T Consensus 217 --------------------------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 217 --------------------------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp --------------------------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred --------------------------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 0011226889999999999999888777776 69999999999999
Q ss_pred ccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccc
Q 005267 540 GGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEG 588 (705)
Q Consensus 540 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 588 (705)
.+|..+. ++|++|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 265 -~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 265 -QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred -chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 6777774 8999999999999964 43 6788999999999999874
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=5.5e-22 Score=198.20 Aligned_cols=201 Identities=23% Similarity=0.302 Sum_probs=99.8
Q ss_pred CCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccC
Q 005267 196 SIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGN 275 (705)
Q Consensus 196 ~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 275 (705)
+.+.++++++.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCC-ccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 3455666666555 3343222 4455555555555544444555555555555555555533333344455555555555
Q ss_pred CcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccc
Q 005267 276 NNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQ 355 (705)
Q Consensus 276 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 355 (705)
|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+ ++..+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----------------------~~~~~~ 151 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-----------------------QSLPKG 151 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-----------------------CCCCTT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC-----------------------CccCHh
Confidence 555444444444444555555555444444444444444444444444433 333333
Q ss_pred cccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcC
Q 005267 356 TFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 421 (705)
Q Consensus 356 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 421 (705)
.|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 344455555555555555544444455555555555555555554444455555555555555544
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=7.9e-23 Score=204.49 Aligned_cols=155 Identities=26% Similarity=0.325 Sum_probs=82.9
Q ss_pred CCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEEC
Q 005267 171 PHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRL 249 (705)
Q Consensus 171 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 249 (705)
++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+.. ++|++|++++|.+++..+..|..+++|++|++
T Consensus 63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 4444444444444431 24555555555555555555444444333 55555555555555554555555555555555
Q ss_pred cCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccc
Q 005267 250 SGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLS 327 (705)
Q Consensus 250 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 327 (705)
++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 555555444444555555555555555555544444555555555555555555555444555555555555555544
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.4e-21 Score=196.85 Aligned_cols=200 Identities=24% Similarity=0.184 Sum_probs=142.5
Q ss_pred CCCCCcEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCC
Q 005267 148 PWKNLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGM 227 (705)
Q Consensus 148 ~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~ 227 (705)
.++++++++++++.++...+..++++++|++++|.+++..+..|.++++|++|++++|.+++..+ .-..++|++|++++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSH 86 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCS
T ss_pred ccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEEECCC
Confidence 34567777777777775555557788888888888887778888999999999999998875433 33347788888888
Q ss_pred CcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCC
Q 005267 228 NNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIP 307 (705)
Q Consensus 228 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 307 (705)
|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+
T Consensus 87 N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred CcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence 8777 556677777778888888888776666677777788888888887776666667777777777777777776655
Q ss_pred ccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcc
Q 005267 308 ECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKF 349 (705)
Q Consensus 308 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l 349 (705)
..|..+++|+.|++++|+++...+..+....|+.+++++|.+
T Consensus 166 ~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 666777777777777777763332233333455555555544
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2.6e-22 Score=200.77 Aligned_cols=202 Identities=20% Similarity=0.216 Sum_probs=128.9
Q ss_pred CCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEe
Q 005267 241 GCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLD 320 (705)
Q Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 320 (705)
+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 4444555555544442 1 2244455555555555555431 2444555555555555555544444455555555555
Q ss_pred ccCcccccccCcccc-cCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCC
Q 005267 321 VGNNSLSGPIPEYLG-NSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINE 399 (705)
Q Consensus 321 l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 399 (705)
+++|.+++..+..+. ..+|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 555555544444333 2355666666666665555666777888888888888887777677888888888888888888
Q ss_pred CcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHh
Q 005267 400 TFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWY 455 (705)
Q Consensus 400 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~ 455 (705)
..+..+..+++|+.|++++|++. +.+++|+.++++.|.++|.+|..+
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBC---------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred cCHHHHhCCcCCCEEEccCCCcc---------ccCcHHHHHHHHHHhCCCcccCcc
Confidence 77777888888888888888876 346678888888999988888653
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=8e-24 Score=221.20 Aligned_cols=83 Identities=20% Similarity=0.186 Sum_probs=45.5
Q ss_pred EECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCC----ccccCCC-CCcEEEccCccccCCCCccccCC-----CCC
Q 005267 247 LRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIP----ECLGNST-RLSFLDVRNNNLSGPIPECLGNS-----TSL 316 (705)
Q Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~L 316 (705)
++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666555555555556666666666655444 4455555 56666666665555444444332 555
Q ss_pred CeEeccCcccccc
Q 005267 317 SFLDVGNNSLSGP 329 (705)
Q Consensus 317 ~~L~l~~n~l~~~ 329 (705)
++|++++|.+++.
T Consensus 83 ~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 83 TSLNLSGNFLSYK 95 (362)
T ss_dssp CEEECCSSCGGGS
T ss_pred cEEECcCCcCChH
Confidence 5555555555433
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.6e-21 Score=194.90 Aligned_cols=204 Identities=21% Similarity=0.144 Sum_probs=145.9
Q ss_pred cccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCc
Q 005267 190 SFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQ 269 (705)
Q Consensus 190 ~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (705)
.+++++++++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++. +. ...+++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence 3567788888888888887 4554443 6788888888888877788888888888888888888754 32 26788888
Q ss_pred EEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcc
Q 005267 270 VLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKF 349 (705)
Q Consensus 270 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l 349 (705)
+|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++..
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~------------------- 140 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP------------------- 140 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-------------------
Confidence 8888888887 56777777888888888888887766677777777777777777665433
Q ss_pred cccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCc
Q 005267 350 SGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFC 422 (705)
Q Consensus 350 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 422 (705)
+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++. +|..+...++|+.++|++|++.
T Consensus 141 ----~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 141 ----PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ----TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred ----hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCcc
Confidence 3344455566666666666665555556666777777777777763 4445555667777777777764
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.2e-23 Score=217.84 Aligned_cols=225 Identities=19% Similarity=0.202 Sum_probs=109.1
Q ss_pred EcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCC----ccCCCCC-cCcEEEccCCcCCCCCCccccCC-----CCCc
Q 005267 224 DLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLP----PSLSNCV-NLQVLDVGNNNLSGPIPECLGNS-----TRLS 293 (705)
Q Consensus 224 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L~ 293 (705)
+++.|.+++.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 444444444444444444445555555555544333 3444444 45555555555554444444332 5555
Q ss_pred EEEccCccccCCCCcc----ccCC-CCCCeEeccCcccccccCcccc------cCcccEEEcCCCcccccc----ccccc
Q 005267 294 FLDVRNNNLSGPIPEC----LGNS-TSLSFLDVGNNSLSGPIPEYLG------NSTLEVLDMRMNKFSGSL----PQTFG 358 (705)
Q Consensus 294 ~L~L~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~~~------~~~L~~L~l~~n~l~~~~----~~~~~ 358 (705)
+|++++|.+++..+.. +..+ ++|+.|++++|.+++..+..+. ..+|++|++++|.+++.. +..+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 5555555555444332 2222 5566666666655544333221 125556666666555322 22333
Q ss_pred CCC-CccEEEccCCcCCCCCCccc----cCC-CCCcEEEccCCcCCCC----cchhhhC-CCCCCEEEccCCcCcCCCCC
Q 005267 359 KSC-VLVSLKLNGNRLEGPLPPSL----VNC-RHLEVIDVGNNQINET----FPHWLDV-LPELQVLTLRSNRFCGPIGD 427 (705)
Q Consensus 359 ~~~-~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~l~~~~~~ 427 (705)
..+ +|++|++++|++++..+..+ ..+ ++|++|++++|++++. ++..+.. .++|++|+|++|++.+..+.
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 333 66666666666665544332 333 4666777777666553 2233333 34666666666665433211
Q ss_pred C--CCCCCCCCccEEEccCCcCc
Q 005267 428 T--KTRVPFPKLRIIDLSYNQFT 448 (705)
Q Consensus 428 ~--~~~~~~~~L~~L~ls~n~l~ 448 (705)
. .....+++|+.|++++|.+.
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHHHT
T ss_pred HHHHHHhcCCCccEEEeccCCcc
Confidence 0 01123445555555555543
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=7.7e-22 Score=194.84 Aligned_cols=121 Identities=24% Similarity=0.311 Sum_probs=91.7
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEe
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 580 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 580 (705)
+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|++|+
T Consensus 106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 56788888888888877777788999999999999999988777899999999999999999988888999999999999
Q ss_pred cccCcccccCCCCCCCCCC------CCCcccCCCCCCCCCCCCCCCCC
Q 005267 581 LSNNQLEGPIPGGPQFNTF------GIDSYSGNVGLCGFPLSKICRID 622 (705)
Q Consensus 581 ls~N~l~g~ip~~~~~~~~------~~~~~~~n~~lcg~~~~~~c~~~ 622 (705)
+++|++.|..+....+..+ ......|+ .+|+.|....|..+
T Consensus 186 l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 186 LFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp CCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred eeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 9999999874432111111 11112233 36777777778654
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4.4e-23 Score=213.70 Aligned_cols=230 Identities=17% Similarity=0.214 Sum_probs=135.5
Q ss_pred CCCCeEeccCcccccccCcccccCcccEEEcCCCccccc-ccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEc
Q 005267 314 TSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGS-LPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDV 392 (705)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 392 (705)
++++.|++++|.+.+..+..+...+|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 334444444444444333333333444455554444433 4444555555666666655555555555555666666666
Q ss_pred cCC-cCCCC-cchhhhCCCCCCEEEccCC-cCcCC-CCCCCCCCCCC-CccEEEccCCc--Cc-ccCChHhhhhcccccc
Q 005267 393 GNN-QINET-FPHWLDVLPELQVLTLRSN-RFCGP-IGDTKTRVPFP-KLRIIDLSYNQ--FT-GVLPIWYLNGFKAMMR 464 (705)
Q Consensus 393 ~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~~~-~L~~L~ls~n~--l~-~~~p~~~~~~~~~l~~ 464 (705)
++| .+++. ++..+..+++|++|++++| .+++. ++... ..++ +|++|++++|. ++ +.+|..
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~l~~~L~~L~l~~~~~~~~~~~l~~~---------- 217 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV--AHVSETITQLNLSGYRKNLQKSDLSTL---------- 217 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH--HHSCTTCCEEECCSCGGGSCHHHHHHH----------
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH--HhcccCCCEEEeCCCcccCCHHHHHHH----------
Confidence 666 44432 3444555666666666666 54432 11111 2345 66666666663 33 111111
Q ss_pred ccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCc-cccccchhhhcCCCCCEEecCCCc-CCccC
Q 005267 465 RDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNR-FQGEISEVLGKLNSLKSLNISHNN-LTGGI 542 (705)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~ 542 (705)
...+++|++|++++|. +++..+..+..+++|++|++++|. ++...
T Consensus 218 ---------------------------------~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 218 ---------------------------------VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp ---------------------------------HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred ---------------------------------HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence 1226789999999998 777778888999999999999995 43333
Q ss_pred CccccCCCCCCeeeCCCCcCCCcCcccccCC-CCCCeEecccCcccccCCC
Q 005267 543 PSSLRNLTELESLDLSSNKLAGRIPTQLASL-NYLSVLNLSNNQLEGPIPG 592 (705)
Q Consensus 543 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~ 592 (705)
...++++++|+.|++++| ++.. .+..+ ..+..|++++|++++..|.
T Consensus 265 ~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 336888999999999999 4322 33333 2467777899999998875
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.9e-21 Score=189.05 Aligned_cols=178 Identities=17% Similarity=0.222 Sum_probs=146.4
Q ss_pred CcEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcC
Q 005267 152 LEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNF 230 (705)
Q Consensus 152 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l 230 (705)
.++++++++.++...+..++++++|++++|.+++..+..|.++++|++|++++|.+++..+..+.. ++|++|++++|.+
T Consensus 16 ~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp GTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 345555555555444444667888888888888777778888999999999999988777776665 8899999999998
Q ss_pred CcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccc
Q 005267 231 QGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECL 310 (705)
Q Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 310 (705)
++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|.+++..+..|+.+++|++|++++|.+++..+..+
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence 88877888889999999999999987766778889999999999999987777788889999999999999998777788
Q ss_pred cCCCCCCeEeccCcccccc
Q 005267 311 GNSTSLSFLDVGNNSLSGP 329 (705)
Q Consensus 311 ~~l~~L~~L~l~~n~l~~~ 329 (705)
..+++|+.|++++|.+.+.
T Consensus 176 ~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 176 DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSCCBCTT
T ss_pred hCCCCCCEEEeeCCceeCC
Confidence 8899999999999988765
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.2e-22 Score=210.40 Aligned_cols=221 Identities=15% Similarity=0.196 Sum_probs=149.4
Q ss_pred CCcEEEcccCCCCCCCcccccCC--CCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcc-cchhccCCCCCCEEE
Q 005267 172 HMVQLSISNNSLTGEIPSSFCNL--SSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGT-IPQTYAKGCNLTYLR 248 (705)
Q Consensus 172 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 248 (705)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+..+..++|++|++++|.+++. ++..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 3566777776665 3455555 788888888888887777766668888888888887765 777788888888888
Q ss_pred CcCCcCcCCCCccCCCCCcCcEEEccCC-cCCCC-CCccccCCCCCcEEEccCc-cccCC-CCccccCCC-CCCeEeccC
Q 005267 249 LSGNHLEGPLPPSLSNCVNLQVLDVGNN-NLSGP-IPECLGNSTRLSFLDVRNN-NLSGP-IPECLGNST-SLSFLDVGN 323 (705)
Q Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~l~~ 323 (705)
+++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8888887777777888888888888888 56542 5556777888888888888 77653 455677777 888888888
Q ss_pred cc--cc-cccCcccc-cCcccEEEcCCCc-ccccccccccCCCCccEEEccCCc-CCCCCCccccCCCCCcEEEccCC
Q 005267 324 NS--LS-GPIPEYLG-NSTLEVLDMRMNK-FSGSLPQTFGKSCVLVSLKLNGNR-LEGPLPPSLVNCRHLEVIDVGNN 395 (705)
Q Consensus 324 n~--l~-~~~~~~~~-~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n 395 (705)
|. ++ +.++..+. .++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 73 33 22333322 2366666666666 454555555566666666666663 21111113555666666666655
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=3.1e-23 Score=218.96 Aligned_cols=256 Identities=19% Similarity=0.201 Sum_probs=146.2
Q ss_pred CCccccCCCCCcEEEccCccccCCCC----ccccCCCCCCeEeccCccc---ccccCcccccCcccEEEcCCCccccccc
Q 005267 282 IPECLGNSTRLSFLDVRNNNLSGPIP----ECLGNSTSLSFLDVGNNSL---SGPIPEYLGNSTLEVLDMRMNKFSGSLP 354 (705)
Q Consensus 282 ~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l---~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 354 (705)
++..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+ .+.+|..+. .+.
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~----------------~l~ 87 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR----------------LLL 87 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH----------------HHH
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH----------------HHH
Confidence 44556666777777777777665433 2355667777777766532 333332220 011
Q ss_pred ccccCCCCccEEEccCCcCCC----CCCccccCCCCCcEEEccCCcCCCCcchhhh----CC---------CCCCEEEcc
Q 005267 355 QTFGKSCVLVSLKLNGNRLEG----PLPPSLVNCRHLEVIDVGNNQINETFPHWLD----VL---------PELQVLTLR 417 (705)
Q Consensus 355 ~~~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~L~ 417 (705)
..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..+..+. .+ ++|++|+++
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 122455555555555555554 2444555556666666666655433222222 22 566666666
Q ss_pred CCcCcC-CCCCC-CCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchH
Q 005267 418 SNRFCG-PIGDT-KTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDI 495 (705)
Q Consensus 418 ~n~l~~-~~~~~-~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (705)
+|++.. .++.. .....+++|++|++++|.++...-.....
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~-------------------------------------- 209 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL-------------------------------------- 209 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH--------------------------------------
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHH--------------------------------------
Confidence 666541 11100 00123456666666666665210000000
Q ss_pred HHhhhhccccEEEccCCccc----cccchhhhcCCCCCEEecCCCcCCcc----CCccccC--CCCCCeeeCCCCcCCC-
Q 005267 496 QMERILTTFATIDLSSNRFQ----GEISEVLGKLNSLKSLNISHNNLTGG----IPSSLRN--LTELESLDLSSNKLAG- 564 (705)
Q Consensus 496 ~~~~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~L~Ls~N~l~~- 564 (705)
.....+++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++. +|..+.. +++|++|+|++|++++
T Consensus 210 ~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289 (386)
T ss_dssp TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred HHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence 00011567778888888875 55677777888888888888888765 4556533 7888888888888886
Q ss_pred ---cCcccc-cCCCCCCeEecccCcccccCC
Q 005267 565 ---RIPTQL-ASLNYLSVLNLSNNQLEGPIP 591 (705)
Q Consensus 565 ---~~p~~l-~~l~~L~~L~ls~N~l~g~ip 591 (705)
.+|..+ .++++|++|++++|++++..|
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 477666 557888888888888877654
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6.1e-21 Score=186.97 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=40.8
Q ss_pred CCCEEEcCCCcCCcccchhccCCCCCCEEECcCCc-CcCCCCccCCCCCcCcEEEccC-CcCCCCCCccccCCCCCcEEE
Q 005267 219 TLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNH-LEGPLPPSLSNCVNLQVLDVGN-NNLSGPIPECLGNSTRLSFLD 296 (705)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 296 (705)
++++|++++|++++..+..|..+++|++|++++|+ ++...+..|..+++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444444444444445555555555553 4433333444455555555554 444443334444455555555
Q ss_pred ccCccccC
Q 005267 297 VRNNNLSG 304 (705)
Q Consensus 297 L~~n~l~~ 304 (705)
+++|.+++
T Consensus 112 l~~n~l~~ 119 (239)
T 2xwt_C 112 IFNTGLKM 119 (239)
T ss_dssp EEEECCCS
T ss_pred CCCCCCcc
Confidence 55554443
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=7.1e-21 Score=186.48 Aligned_cols=177 Identities=16% Similarity=0.190 Sum_probs=104.7
Q ss_pred CCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCc-CCcccchhccCCCCCCEEECcC-CcCcCCCCccCCCCCcCcEEE
Q 005267 196 SIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNN-FQGTIPQTYAKGCNLTYLRLSG-NHLEGPLPPSLSNCVNLQVLD 272 (705)
Q Consensus 196 ~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 272 (705)
+|++|++++|.+++..+..+.. ++|++|++++|+ ++...+..|..+++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 4444444444444333333322 444444444443 4444445666777777777776 777765556677777777777
Q ss_pred ccCCcCCCCCCccccCCCCCc---EEEccCc-cccCCCCccccCCCCCC-eEeccCcccccccCcccccCcccEEEcCCC
Q 005267 273 VGNNNLSGPIPECLGNSTRLS---FLDVRNN-NLSGPIPECLGNSTSLS-FLDVGNNSLSGPIPEYLGNSTLEVLDMRMN 347 (705)
Q Consensus 273 L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 347 (705)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ .|++++|.++...+..+...+|+.|++++|
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 77777775 454 66777776 7888887 77766666677777777 777777777633222233335555555555
Q ss_pred c-ccccccccccCC-CCccEEEccCCcCC
Q 005267 348 K-FSGSLPQTFGKS-CVLVSLKLNGNRLE 374 (705)
Q Consensus 348 ~-l~~~~~~~~~~~-~~L~~L~L~~n~l~ 374 (705)
+ +++..+..|..+ ++|+.|++++|+++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccc
Confidence 3 554444445544 55555555555554
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=199.08 Aligned_cols=198 Identities=26% Similarity=0.321 Sum_probs=86.7
Q ss_pred CCCEEEcCCCcCCcccchhc--cCCCCCCEEECcCCcCcCCCC----ccCCCCCcCcEEEccCCcCCCCCCccccCCCCC
Q 005267 219 TLENLDLGMNNFQGTIPQTY--AKGCNLTYLRLSGNHLEGPLP----PSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRL 292 (705)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 292 (705)
+|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444444444444 444455555555555443322 222345555555555555554444555555555
Q ss_pred cEEEccCccccCC--C--CccccCCCCCCeEeccCcccccccCc---cc-ccCcccEEEcCCCcccccccccccCC---C
Q 005267 293 SFLDVRNNNLSGP--I--PECLGNSTSLSFLDVGNNSLSGPIPE---YL-GNSTLEVLDMRMNKFSGSLPQTFGKS---C 361 (705)
Q Consensus 293 ~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~---~~-~~~~L~~L~l~~n~l~~~~~~~~~~~---~ 361 (705)
++|++++|.+.+. . +..+..+++|++|++++|+++...+. .+ ...+|++|++++|++++..|..+..+ +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 5555555554321 1 12224455555555555555321110 11 11244444444444444434333333 3
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcC
Q 005267 362 VLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRF 421 (705)
Q Consensus 362 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 421 (705)
+|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTT
T ss_pred cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCC
Confidence 4444555555444 2333332 3444444444444432 11 23344444444444443
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=5.5e-23 Score=217.10 Aligned_cols=244 Identities=19% Similarity=0.208 Sum_probs=112.0
Q ss_pred CcccccCCCCCcEEEcccCcCCccCCc----ccCC-CCCCEEEcCCCc---CCcccchhc-------cCCCCCCEEECcC
Q 005267 187 IPSSFCNLSSIQYLYLSNNSLSGQIPQ----CLGN-STLENLDLGMNN---FQGTIPQTY-------AKGCNLTYLRLSG 251 (705)
Q Consensus 187 ~~~~~~~l~~L~~L~ls~n~~~~~~~~----~~~~-~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~L~~ 251 (705)
++..+..+++|++|++++|.+....+. .+.. ++|++|++++|. +.+.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 344455556666666666655543221 1222 445555555432 222333322 4455555555555
Q ss_pred CcCcC----CCCccCCCCCcCcEEEccCCcCCCCCCccccC----C---------CCCcEEEccCccccC-CCC---ccc
Q 005267 252 NHLEG----PLPPSLSNCVNLQVLDVGNNNLSGPIPECLGN----S---------TRLSFLDVRNNNLSG-PIP---ECL 310 (705)
Q Consensus 252 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----l---------~~L~~L~L~~n~l~~-~~~---~~l 310 (705)
|.+.+ .+|..+..+++|++|++++|.+++..+..+.. + ++|++|++++|.++. .++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 55543 23344444555555555555543222222211 1 444444444444431 111 223
Q ss_pred cCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccc---cccccccCCCCccEEEccCCcCC----CCCCccccC
Q 005267 311 GNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSG---SLPQTFGKSCVLVSLKLNGNRLE----GPLPPSLVN 383 (705)
Q Consensus 311 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~l~~ 383 (705)
..+++|+.|++++|.+... + ..+..+..+++|+.|+|++|.++ +.+|..+..
T Consensus 184 ~~~~~L~~L~L~~n~l~~~---------------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPE---------------------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp HHCTTCCEEECCSSCCCHH---------------------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred HhCCCcCEEECcCCCCCHh---------------------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 3444444444444444310 1 22224445555555555555553 334445555
Q ss_pred CCCCcEEEccCCcCCCC----cchhhhC--CCCCCEEEccCCcCcC----CCCCCCCCCCCCCccEEEccCCcCcccCC
Q 005267 384 CRHLEVIDVGNNQINET----FPHWLDV--LPELQVLTLRSNRFCG----PIGDTKTRVPFPKLRIIDLSYNQFTGVLP 452 (705)
Q Consensus 384 l~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~~~~~~~~L~~L~ls~n~l~~~~p 452 (705)
+++|++|++++|++++. ++.++.. +++|+.|+|++|.+++ .++... ...+++|+.|++++|++++..+
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI-DEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH-HHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH-HhcCCCceEEEccCCcCCcchh
Confidence 55555566655555543 3333422 5566666666665554 122111 0124566666666666665543
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.2e-20 Score=188.89 Aligned_cols=190 Identities=21% Similarity=0.327 Sum_probs=130.9
Q ss_pred cccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEcc
Q 005267 338 TLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLR 417 (705)
Q Consensus 338 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 417 (705)
+|+.|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++++. ..+..+++|+.|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence 45555555555443 22 35556666666666666664332 66666666666666666553 246666667777777
Q ss_pred CCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHH
Q 005267 418 SNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQM 497 (705)
Q Consensus 418 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (705)
+|++.+..+ ...+++|+.|++++|++++..+ +
T Consensus 116 ~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l----------------------------------------- 147 (308)
T 1h6u_A 116 STQITDVTP----LAGLSNLQVLYLDLNQITNISP---L----------------------------------------- 147 (308)
T ss_dssp TSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---G-----------------------------------------
T ss_pred CCCCCCchh----hcCCCCCCEEECCCCccCcCcc---c-----------------------------------------
Confidence 766655322 2456777777777777764322 1
Q ss_pred hhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCC
Q 005267 498 ERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLS 577 (705)
Q Consensus 498 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 577 (705)
..+++|+.|++++|++++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++..| +..+++|+
T Consensus 148 -~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~ 220 (308)
T 1h6u_A 148 -AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLF 220 (308)
T ss_dssp -GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCC
T ss_pred -cCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCC
Confidence 116788889999998886544 8889999999999999986544 7889999999999999986553 78899999
Q ss_pred eEecccCcccc
Q 005267 578 VLNLSNNQLEG 588 (705)
Q Consensus 578 ~L~ls~N~l~g 588 (705)
.|++++|++++
T Consensus 221 ~L~l~~N~i~~ 231 (308)
T 1h6u_A 221 IVTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEccCCeeec
Confidence 99999999876
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.2e-19 Score=184.77 Aligned_cols=193 Identities=24% Similarity=0.340 Sum_probs=87.3
Q ss_pred cCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEE
Q 005267 192 CNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVL 271 (705)
Q Consensus 192 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (705)
..+++|++|++++|.+.. ++..-..++|++|++++|.+.+..+ +..+++|++|++++|.+++. + .+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCccC-chhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEE
Confidence 345566666666665542 3322222455555555555543322 44445555555555544421 1 34444444444
Q ss_pred EccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccc
Q 005267 272 DVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSG 351 (705)
Q Consensus 272 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 351 (705)
++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|+.|+++ +|.+++
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~-----------------------~n~l~~ 165 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIG-----------------------NAQVSD 165 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC-----------------------SSCCCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEcc-----------------------CCcCCC
Confidence 4444444432 1 14444444444444444443211 3333344444433 333332
Q ss_pred cccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCc
Q 005267 352 SLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFC 422 (705)
Q Consensus 352 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 422 (705)
..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|+++
T Consensus 166 ~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 166 LTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred Chh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 221 4444555555555555543221 4455555555555555544432 444555555555555443
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=3.8e-19 Score=184.61 Aligned_cols=240 Identities=17% Similarity=0.135 Sum_probs=115.8
Q ss_pred EEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcc
Q 005267 154 FLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGT 233 (705)
Q Consensus 154 ~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 233 (705)
+++.+++.++......++++++|++++|+|+...+.+|.++++|++|+|++|.+.+.+|
T Consensus 13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~--------------------- 71 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE--------------------- 71 (350)
T ss_dssp EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC---------------------
T ss_pred EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC---------------------
Confidence 34444444443222234455555555555553333445555555555555555433222
Q ss_pred cchhccCCCCCCE-EECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccC-ccccCCCCcccc
Q 005267 234 IPQTYAKGCNLTY-LRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRN-NNLSGPIPECLG 311 (705)
Q Consensus 234 ~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~ 311 (705)
+..|.+++++++ +.+.+|+++...|..|..+++|++|++++|++....+..+....++..+++.+ +.+....+..|.
T Consensus 72 -~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~ 150 (350)
T 4ay9_X 72 -ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150 (350)
T ss_dssp -TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSST
T ss_pred -hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchh
Confidence 234455555443 34444556555555566666666666666666544444444445555555544 334333333343
Q ss_pred CCC-CCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccC-CcCCCCCCccccCCCCCcE
Q 005267 312 NST-SLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNG-NRLEGPLPPSLVNCRHLEV 389 (705)
Q Consensus 312 ~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~ 389 (705)
.+. .++.|++++|+++...+..+.. .+|+++++.+ |.++...+..|.++++|++
T Consensus 151 ~~~~~l~~L~L~~N~i~~i~~~~f~~------------------------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~ 206 (350)
T 4ay9_X 151 GLSFESVILWLNKNGIQEIHNSAFNG------------------------TQLDELNLSDNNNLEELPNDVFHGASGPVI 206 (350)
T ss_dssp TSBSSCEEEECCSSCCCEECTTSSTT------------------------EEEEEEECTTCTTCCCCCTTTTTTEECCSE
T ss_pred hcchhhhhhccccccccCCChhhccc------------------------cchhHHhhccCCcccCCCHHHhccCcccch
Confidence 332 3444555555544333323322 3455555543 3333232334555566666
Q ss_pred EEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCC
Q 005267 390 IDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYN 445 (705)
Q Consensus 390 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n 445 (705)
|++++|+++...+.. +.+|+.|.+.++.-...+|. ...+++|+.++++++
T Consensus 207 LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 207 LDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT---LEKLVALMEASLTYP 256 (350)
T ss_dssp EECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSCH
T ss_pred hhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC---chhCcChhhCcCCCC
Confidence 666666655543332 33444444444433333332 145677777777654
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=4.9e-19 Score=183.81 Aligned_cols=235 Identities=17% Similarity=0.151 Sum_probs=132.5
Q ss_pred EEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCC-ccCCCCCcCcE-EEccCC
Q 005267 199 YLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLP-PSLSNCVNLQV-LDVGNN 276 (705)
Q Consensus 199 ~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L~~n 276 (705)
+++.++++++ .+|..+ .+++++|+|++|+++...+..|.++++|++|+|++|++.+.+| ..|.+++++++ +.++.|
T Consensus 13 ~v~C~~~~Lt-~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCC-SCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCC-ccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 3444444444 333322 1344444444444443333445555555555555555433332 23444444443 333344
Q ss_pred cCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCC-Ccccccccc
Q 005267 277 NLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRM-NKFSGSLPQ 355 (705)
Q Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~ 355 (705)
+++...|..|..+++|++|++++|.++...+..+.... ++..+++.+ +.+....+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~-----------------------~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL-----------------------QKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS-----------------------SCEEEEEESCTTCCEECTT
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccc-----------------------hhhhhhhcccccccccccc
Confidence 44444444444444555555554444433333333333 445555533 344444445
Q ss_pred cccCCC-CccEEEccCCcCCCCCCccccCCCCCcEEEccC-CcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCC
Q 005267 356 TFGKSC-VLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGN-NQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVP 433 (705)
Q Consensus 356 ~~~~~~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 433 (705)
.|..+. .++.|++++|+++...+..| ...+|+.+++++ |.++...+..|..+++|++|++++|+++...+ ..
T Consensus 148 ~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-----~~ 221 (350)
T 4ay9_X 148 SFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-----YG 221 (350)
T ss_dssp SSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-----SS
T ss_pred chhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-----hh
Confidence 555553 58889999999985544444 567899999985 66776666788999999999999999986543 23
Q ss_pred CCCccEEEccCCcCcccCChHhhhhcccccccc
Q 005267 434 FPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRD 466 (705)
Q Consensus 434 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~ 466 (705)
+.+|+.|.+.++.-...+|. +..++.+...+
T Consensus 222 ~~~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~ 252 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLPT--LEKLVALMEAS 252 (350)
T ss_dssp CTTCCEEECTTCTTCCCCCC--TTTCCSCCEEE
T ss_pred hccchHhhhccCCCcCcCCC--chhCcChhhCc
Confidence 66788888777665556663 34455554443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=5.8e-19 Score=168.81 Aligned_cols=176 Identities=21% Similarity=0.241 Sum_probs=111.8
Q ss_pred cEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCC
Q 005267 153 EFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQ 231 (705)
Q Consensus 153 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~ 231 (705)
+.++++++.++......++++++|++++|.+++..+..|..+++|++|++++|.+++..+..+.. ++|++|++++|.++
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 34555555555444444566777777777777655556677777777777777776554444443 66777777777766
Q ss_pred cccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCcccc
Q 005267 232 GTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLG 311 (705)
Q Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 311 (705)
+..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------- 162 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------- 162 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------
Confidence 5555556667777777777777765555556666777777777776665555556666667777776665542
Q ss_pred CCCCCCeEeccCcccccccCcccc
Q 005267 312 NSTSLSFLDVGNNSLSGPIPEYLG 335 (705)
Q Consensus 312 ~l~~L~~L~l~~n~l~~~~~~~~~ 335 (705)
.+++|+.|+++.|+++|.+|..++
T Consensus 163 ~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred CCCCHHHHHHHHHhCCceeeccCc
Confidence 344566666666666666665443
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=5.5e-19 Score=168.98 Aligned_cols=176 Identities=24% Similarity=0.308 Sum_probs=103.3
Q ss_pred cEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCC
Q 005267 174 VQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGN 252 (705)
Q Consensus 174 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 252 (705)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+.. ++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45666666666 334333 346777777777776554444433 66666666666666555555666666666666666
Q ss_pred cCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCc
Q 005267 253 HLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPE 332 (705)
Q Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 332 (705)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~- 165 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP- 165 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT-
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC-
Confidence 6665545555666666666666666665555556666666666666666665555556666666666666665543221
Q ss_pred ccccCcccEEEcCCCccccccccccc
Q 005267 333 YLGNSTLEVLDMRMNKFSGSLPQTFG 358 (705)
Q Consensus 333 ~~~~~~L~~L~l~~n~l~~~~~~~~~ 358 (705)
.|+.|+++.|+++|.+|..++
T Consensus 166 -----~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 166 -----GIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp -----TTHHHHHHHHHCTTTBBCTTS
T ss_pred -----CHHHHHHHHHhCCceeeccCc
Confidence 344444444444444444433
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=2.3e-19 Score=172.75 Aligned_cols=92 Identities=27% Similarity=0.292 Sum_probs=84.6
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEe
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 580 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 580 (705)
+++|++|+|++|++++..+..|+.+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|++|+
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 56778888888888888888899999999999999999998899999999999999999999999999999999999999
Q ss_pred cccCcccccCCC
Q 005267 581 LSNNQLEGPIPG 592 (705)
Q Consensus 581 ls~N~l~g~ip~ 592 (705)
+++|++.|.++.
T Consensus 160 L~~N~l~c~c~l 171 (220)
T 2v70_A 160 LLANPFNCNCYL 171 (220)
T ss_dssp CCSCCEECSGGG
T ss_pred ecCcCCcCCCch
Confidence 999999998874
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=4.3e-18 Score=185.74 Aligned_cols=148 Identities=32% Similarity=0.473 Sum_probs=78.6
Q ss_pred CCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEe
Q 005267 241 GCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLD 320 (705)
Q Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 320 (705)
+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|+
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLS 166 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEE
Confidence 3444444444444443 333 332 45555555555443 333 34445555555555543 222 334555555
Q ss_pred ccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCc-------cEEEccCCcCCCCCCccccCCCCCcEEEcc
Q 005267 321 VGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVL-------VSLKLNGNRLEGPLPPSLVNCRHLEVIDVG 393 (705)
Q Consensus 321 l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 393 (705)
+++|.+++ +|. +. .+|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|+++
T Consensus 167 Ls~N~L~~-lp~-l~-~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 167 VRNNQLTF-LPE-LP-ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238 (571)
T ss_dssp CCSSCCSC-CCC-CC-TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECC
T ss_pred CCCCCCCC-cch-hh-CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEee
Confidence 55555543 333 22 45555555555555 3333 332 44 77777777777 456666667888888888
Q ss_pred CCcCCCCcchhhhCC
Q 005267 394 NNQINETFPHWLDVL 408 (705)
Q Consensus 394 ~n~l~~~~~~~~~~l 408 (705)
+|++++..|..+..+
T Consensus 239 ~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 239 DNPLSSRIRESLSQQ 253 (571)
T ss_dssp SSSCCHHHHHHHHHH
T ss_pred CCcCCCcCHHHHHHh
Confidence 888877777766553
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=3.9e-18 Score=186.09 Aligned_cols=183 Identities=29% Similarity=0.403 Sum_probs=102.0
Q ss_pred CccEEECCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCc
Q 005267 130 TLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSG 209 (705)
Q Consensus 130 ~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~ 209 (705)
+++.|++++|.+++++..-+++|++|++++|.++ .+|..+++|++|++++|.+++ +|. +.+ +|++|++++|.+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLPELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCCCCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccccccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence 5666666666665544433455666666666665 333445666666666666664 444 443 66666666666654
Q ss_pred cCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCC
Q 005267 210 QIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNS 289 (705)
Q Consensus 210 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 289 (705)
+|. ..++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +..
T Consensus 135 -lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~- 200 (571)
T 3cvr_A 135 -LPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV- 200 (571)
T ss_dssp -CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC--
T ss_pred -CCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH-
Confidence 444 33566666666666654 333 34566666666666664 444 43 56666666666665 3444 333
Q ss_pred CCC-------cEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcc
Q 005267 290 TRL-------SFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEY 333 (705)
Q Consensus 290 ~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 333 (705)
+| +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp --------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred -hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 44 66666666665 34444555666666666666555544443
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.3e-18 Score=179.52 Aligned_cols=91 Identities=29% Similarity=0.253 Sum_probs=74.5
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccc---cCCCCCCeeeCCCCcCCCcCcccccCCCC--
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSL---RNLTELESLDLSSNKLAGRIPTQLASLNY-- 575 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-- 575 (705)
+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..| ..+++|+.|||++|++++..+..+..++.
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~ 190 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence 5778888888888888888888999999999999999996555555 56899999999999999777778888877
Q ss_pred CCeEecccCcccccCC
Q 005267 576 LSVLNLSNNQLEGPIP 591 (705)
Q Consensus 576 L~~L~ls~N~l~g~ip 591 (705)
++.|++++|++.|.+.
T Consensus 191 l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 191 KNGLYLHNNPLECDCK 206 (361)
T ss_dssp HTTEECCSSCEECCHH
T ss_pred cceEEecCCCccCCcC
Confidence 4889999999988764
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=6.4e-18 Score=170.26 Aligned_cols=171 Identities=23% Similarity=0.324 Sum_probs=122.4
Q ss_pred CCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCcc
Q 005267 359 KSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLR 438 (705)
Q Consensus 359 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 438 (705)
.+++|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|+.|++++|++.+... ...+++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS----LKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG----GTTCTTCC
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh----hccCCCCC
Confidence 445566666666666533 2 35666666667776666666544 6666677777777776654321 24567777
Q ss_pred EEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCcccccc
Q 005267 439 IIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEI 518 (705)
Q Consensus 439 ~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 518 (705)
.|++++|++++. + . + ..+++|+.|++++|++++.
T Consensus 116 ~L~L~~n~i~~~-~-~-l------------------------------------------~~l~~L~~L~l~~n~l~~~- 149 (291)
T 1h6t_A 116 SLSLEHNGISDI-N-G-L------------------------------------------VHLPQLESLYLGNNKITDI- 149 (291)
T ss_dssp EEECTTSCCCCC-G-G-G------------------------------------------GGCTTCCEEECCSSCCCCC-
T ss_pred EEECCCCcCCCC-h-h-h------------------------------------------cCCCCCCEEEccCCcCCcc-
Confidence 777777777642 1 0 0 1167888899999988865
Q ss_pred chhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccc
Q 005267 519 SEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEG 588 (705)
Q Consensus 519 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 588 (705)
..++.+++|++|++++|++++..| +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus 150 -~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 -TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 568889999999999999987655 8889999999999999985 44 38889999999999998876
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.3e-17 Score=161.56 Aligned_cols=91 Identities=29% Similarity=0.354 Sum_probs=78.4
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEe
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 580 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 580 (705)
+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|+
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 456677777777777676777888999999999999999 7788899999999999999999987778899999999999
Q ss_pred cccCcccccCCC
Q 005267 581 LSNNQLEGPIPG 592 (705)
Q Consensus 581 ls~N~l~g~ip~ 592 (705)
+++|++.|.++.
T Consensus 166 l~~N~~~c~c~~ 177 (229)
T 3e6j_A 166 LFGNPWDCECRD 177 (229)
T ss_dssp CTTSCBCTTBGG
T ss_pred eeCCCccCCcch
Confidence 999999998863
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=2.5e-17 Score=158.53 Aligned_cols=112 Identities=15% Similarity=0.220 Sum_probs=66.5
Q ss_pred CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEc
Q 005267 218 STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDV 297 (705)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 297 (705)
++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 44444444444444444445555666666666666666555555666666666666666666555666666666666666
Q ss_pred cCccccCCCCccccCCCCCCeEeccCcccccc
Q 005267 298 RNNNLSGPIPECLGNSTSLSFLDVGNNSLSGP 329 (705)
Q Consensus 298 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 329 (705)
++|.+++..|..|..+++|+.|++++|.+.+.
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 66666665566666666666666666666543
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2.9e-17 Score=158.03 Aligned_cols=132 Identities=17% Similarity=0.252 Sum_probs=78.7
Q ss_pred CCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEcc
Q 005267 196 SIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVG 274 (705)
Q Consensus 196 ~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (705)
+|+.|++++|.+++..+..+.. ++|++|++++|.+++..|..|..+++|++|+|++|.++...+..|..+++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 4444444444444333333332 444455555555554555566666666666666666664444455666666666666
Q ss_pred CCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccc
Q 005267 275 NNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLS 327 (705)
Q Consensus 275 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 327 (705)
+|.+++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66666666666666666777777777666666666666777777777777665
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=174.41 Aligned_cols=175 Identities=23% Similarity=0.204 Sum_probs=103.9
Q ss_pred cEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCccccc-CCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcC
Q 005267 153 EFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFC-NLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNF 230 (705)
Q Consensus 153 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l 230 (705)
+.++++++.++......++.++.|++++|.+++..+..+. ++++|++|++++|.+++..+..+.. ++|++|+|++|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 3555555555543333355566677777776665555565 6777777777777776555554544 6666666666666
Q ss_pred CcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccc---cCCCCCcEEEccCccccCCCC
Q 005267 231 QGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECL---GNSTRLSFLDVRNNNLSGPIP 307 (705)
Q Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~ 307 (705)
++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|.+++..+..| ..+++|+.|+|++|.+++..+
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 65555566666666666666666665556666666666666666666664333333 345666666666666665444
Q ss_pred ccccCCCC--CCeEeccCcccc
Q 005267 308 ECLGNSTS--LSFLDVGNNSLS 327 (705)
Q Consensus 308 ~~l~~l~~--L~~L~l~~n~l~ 327 (705)
..+..++. ++.|++++|.+.
T Consensus 181 ~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 181 TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHSCHHHHTTEECCSSCEE
T ss_pred HHhhhccHhhcceEEecCCCcc
Confidence 45555554 255555555544
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=3.7e-17 Score=157.34 Aligned_cols=151 Identities=18% Similarity=0.239 Sum_probs=93.6
Q ss_pred cEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCC
Q 005267 153 EFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQ 231 (705)
Q Consensus 153 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~ 231 (705)
+.++++++.++......++++++|++++|.+++..+..|..+++|++|++++|.+++..|..+.. ++|++|++++|.++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 45666666665443334556666666666666555556666666666666666666555555544 66666666666666
Q ss_pred cccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCcccc
Q 005267 232 GTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLS 303 (705)
Q Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 303 (705)
...+..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555555666666666666666666555666666666666666666666555555666666666666666654
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=3.1e-17 Score=165.19 Aligned_cols=169 Identities=21% Similarity=0.260 Sum_probs=80.0
Q ss_pred CCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEe
Q 005267 241 GCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLD 320 (705)
Q Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 320 (705)
+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEE
Confidence 34444444444444422 2 24444445555555554443222 44445555555555544431 2244445555555
Q ss_pred ccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCC
Q 005267 321 VGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINET 400 (705)
Q Consensus 321 l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 400 (705)
+++|.+.+. +......+|+.|++++|++++. ..+..+++|+.|++++|++++..+ +..+++|+.|++++|++++.
T Consensus 119 L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 119 LEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp CTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence 555544431 2222223444444444444432 344455555555555555554332 55556666666666655543
Q ss_pred cchhhhCCCCCCEEEccCCcCc
Q 005267 401 FPHWLDVLPELQVLTLRSNRFC 422 (705)
Q Consensus 401 ~~~~~~~l~~L~~L~L~~n~l~ 422 (705)
+ .+..+++|+.|++++|++.
T Consensus 194 -~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 194 -R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -G-GGTTCTTCSEEEEEEEEEE
T ss_pred -h-hhccCCCCCEEECcCCccc
Confidence 2 2555555555555555554
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.9e-17 Score=181.34 Aligned_cols=82 Identities=30% Similarity=0.474 Sum_probs=46.4
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEe
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 580 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 580 (705)
+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++. | .+..+++|+.|+
T Consensus 130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~ 203 (605)
T 1m9s_A 130 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLE 203 (605)
T ss_dssp CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEE
T ss_pred CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEE
Confidence 45555566666655543 345556666666666666655444 55556666666666665542 2 355566666666
Q ss_pred cccCcccc
Q 005267 581 LSNNQLEG 588 (705)
Q Consensus 581 ls~N~l~g 588 (705)
+++|++++
T Consensus 204 L~~N~l~~ 211 (605)
T 1m9s_A 204 LFSQECLN 211 (605)
T ss_dssp CCSEEEEC
T ss_pred ccCCcCcC
Confidence 66665554
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=1.5e-16 Score=154.11 Aligned_cols=153 Identities=22% Similarity=0.235 Sum_probs=86.9
Q ss_pred cEEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCc
Q 005267 153 EFLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQG 232 (705)
Q Consensus 153 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~ 232 (705)
+.++++++.++......+++|++|++++|.+++..|..|.++++|++|++++|.+. .
T Consensus 22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-----------------------~ 78 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-----------------------A 78 (229)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-----------------------C
T ss_pred CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-----------------------C
Confidence 34455544444333333455555555555555555555555555555555555554 3
Q ss_pred ccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccC
Q 005267 233 TIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGN 312 (705)
Q Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 312 (705)
..+..|..+++|++|+|++|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 33344555556666666666665544445556666666666666665 45555666666666666666666555555666
Q ss_pred CCCCCeEeccCcccccc
Q 005267 313 STSLSFLDVGNNSLSGP 329 (705)
Q Consensus 313 l~~L~~L~l~~n~l~~~ 329 (705)
+++|+.|++++|.+...
T Consensus 158 l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CTTCCEEECTTSCBCTT
T ss_pred CCCCCEEEeeCCCccCC
Confidence 66666666666666543
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=7.6e-18 Score=158.44 Aligned_cols=114 Identities=21% Similarity=0.334 Sum_probs=95.2
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEe
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 580 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 580 (705)
+++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 67889999999999999899999999999999999999999888999999999999999999999999999999999999
Q ss_pred cccCcccccCCCCCCCCCCCCCcccCCCCCCCCC
Q 005267 581 LSNNQLEGPIPGGPQFNTFGIDSYSGNVGLCGFP 614 (705)
Q Consensus 581 ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~ 614 (705)
+++|++.|.+|.......+....+.++...|+.|
T Consensus 133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 9999999988743221112222334555556554
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.3e-16 Score=176.26 Aligned_cols=106 Identities=25% Similarity=0.333 Sum_probs=44.5
Q ss_pred ccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcE
Q 005267 191 FCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQV 270 (705)
Q Consensus 191 ~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 270 (705)
+..+++|+.|+|++|.+.+ ++.....++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.
T Consensus 105 l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp STTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 4444444444444444442 22222224444444444444432 334444444444444444443222 444444444
Q ss_pred EEccCCcCCCCCCccccCCCCCcEEEccCcccc
Q 005267 271 LDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLS 303 (705)
Q Consensus 271 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 303 (705)
|+|++|.+++. ..+..+++|+.|+|++|.+.
T Consensus 180 L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 180 LYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp EECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred EECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 44444444432 22444444444444444444
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.1e-16 Score=151.44 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=66.8
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCc-CCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeE
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNN-LTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVL 579 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 579 (705)
+++|++|++++|++++..|..++.+++|++|++++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|++|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL 186 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence 5677888888888887778888889999999999998 65 455 68889999999999999885 34 68889999999
Q ss_pred ecccCcccc
Q 005267 580 NLSNNQLEG 588 (705)
Q Consensus 580 ~ls~N~l~g 588 (705)
++++|++.+
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 999998764
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=4.6e-17 Score=161.28 Aligned_cols=168 Identities=20% Similarity=0.276 Sum_probs=101.8
Q ss_pred cccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEcc
Q 005267 338 TLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLR 417 (705)
Q Consensus 338 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 417 (705)
.+..++++++.+++.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4555566666665332 34555666666666666653 33 45566666666666666655444 5555555555555
Q ss_pred CCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHH
Q 005267 418 SNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQM 497 (705)
Q Consensus 418 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (705)
+|++.+..+ . .
T Consensus 94 ~N~l~~l~~-~---~----------------------------------------------------------------- 104 (263)
T 1xeu_A 94 RNRLKNLNG-I---P----------------------------------------------------------------- 104 (263)
T ss_dssp SSCCSCCTT-C---C-----------------------------------------------------------------
T ss_pred CCccCCcCc-c---c-----------------------------------------------------------------
Confidence 555543211 0 0
Q ss_pred hhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCC
Q 005267 498 ERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLS 577 (705)
Q Consensus 498 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 577 (705)
.++|+.|++++|++++. + .++.+++|++|++++|++++. + .++.+++|+.|++++|++++. ..+..+++|+
T Consensus 105 ---~~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 105 ---SACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp ---CSSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred ---cCcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence 13455666666666543 2 366677777777777777754 2 567777777777777777755 5567777777
Q ss_pred eEecccCccccc
Q 005267 578 VLNLSNNQLEGP 589 (705)
Q Consensus 578 ~L~ls~N~l~g~ 589 (705)
.|++++|++++.
T Consensus 176 ~L~l~~N~~~~~ 187 (263)
T 1xeu_A 176 WIDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEEECC
T ss_pred EEeCCCCcccCC
Confidence 777777777665
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=9.8e-17 Score=151.67 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=78.2
Q ss_pred CCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECc
Q 005267 171 PHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLS 250 (705)
Q Consensus 171 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 250 (705)
++|++|++++|.++ .+| .+..+++|++|++++|.+. .++..-..++|++|++++|.+++..+..++.+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 34445555555554 333 3555556666666655443 22222222555555555555555455555555666666666
Q ss_pred CCcCcCCCCccCCCCCcCcEEEccCCc-CCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccc
Q 005267 251 GNHLEGPLPPSLSNCVNLQVLDVGNNN-LSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLS 327 (705)
Q Consensus 251 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 327 (705)
+|.+++..|..+..+++|++|++++|. +. .+| .+..+++|++|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 666555455555556666666666665 33 233 455556666666666665542 2 4555566666666665543
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=6.8e-17 Score=160.03 Aligned_cols=171 Identities=19% Similarity=0.264 Sum_probs=128.5
Q ss_pred CCCCCCeEeccCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEE
Q 005267 312 NSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVID 391 (705)
Q Consensus 312 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 391 (705)
.+.++..++++++.+++.. ......+|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 4556778889999887543 44445699999999999985 44 78899999999999999997544 99999999999
Q ss_pred ccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCccc
Q 005267 392 VGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIE 471 (705)
Q Consensus 392 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~ 471 (705)
+++|++++..+ +.. ++|+.|++++|++++.. . ...
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~--l~~-------------------------------------- 126 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--S--LIH-------------------------------------- 126 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--G--GTT--------------------------------------
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCCCh--h--hcC--------------------------------------
Confidence 99999987543 223 88999999998876431 0 122
Q ss_pred ccccccccccceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCC
Q 005267 472 VNYMRSLNYSYYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTE 551 (705)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 551 (705)
+++|+.|++++|++++. + .++.+++|++|++++|++++. ..+..+++
T Consensus 127 -----------------------------l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~ 173 (263)
T 1xeu_A 127 -----------------------------LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKK 173 (263)
T ss_dssp -----------------------------CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCC
T ss_pred -----------------------------cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCC
Confidence 45566666666666654 2 467777888888888888765 66777888
Q ss_pred CCeeeCCCCcCCCc
Q 005267 552 LESLDLSSNKLAGR 565 (705)
Q Consensus 552 L~~L~Ls~N~l~~~ 565 (705)
|+.|++++|++++.
T Consensus 174 L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 174 VNWIDLTGQKCVNE 187 (263)
T ss_dssp CCEEEEEEEEEECC
T ss_pred CCEEeCCCCcccCC
Confidence 88888888887755
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=2.1e-19 Score=197.36 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=46.7
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccC-CccccCCCCCCeeeCCCCcCCCcCccc---ccCCCCC
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGI-PSSLRNLTELESLDLSSNKLAGRIPTQ---LASLNYL 576 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L 576 (705)
+++|+.|+|++|++++ +| .++.+++|++|+|++|++++.+ |..++.+++|+.|+|++|++++.+|.. +..+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 3445555555555554 34 5666666666666666666555 666666666666666666666554421 2335666
Q ss_pred CeEec
Q 005267 577 SVLNL 581 (705)
Q Consensus 577 ~~L~l 581 (705)
+.|++
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 66653
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=5.1e-19 Score=194.24 Aligned_cols=105 Identities=29% Similarity=0.336 Sum_probs=50.5
Q ss_pred CCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccC
Q 005267 220 LENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRN 299 (705)
Q Consensus 220 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 299 (705)
|+.|++++|.+++ +|. ++.+++|++|+|++|.++ .+|..++.+++|++|+|++|.+++ +| .++.+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4444444444443 232 444445555555555544 344444455555555555555543 33 444455555555555
Q ss_pred ccccCCC-CccccCCCCCCeEeccCcccccc
Q 005267 300 NNLSGPI-PECLGNSTSLSFLDVGNNSLSGP 329 (705)
Q Consensus 300 n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~ 329 (705)
|.+++.. |..+..+++|+.|++++|.+++.
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 5554443 44455555555555555555443
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=1.1e-15 Score=143.68 Aligned_cols=131 Identities=20% Similarity=0.278 Sum_probs=80.7
Q ss_pred cEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccch-hccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCC
Q 005267 198 QYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQ-TYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNN 276 (705)
Q Consensus 198 ~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 276 (705)
+++++++|.++ .+|..+. .++++|++++|.+++..+. .|..+++|++|+|++|++++..|..|..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcC-cCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 34555555543 3333222 2555555555555544443 3566666666666666666666666666667777777777
Q ss_pred cCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCccccccc
Q 005267 277 NLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPI 330 (705)
Q Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 330 (705)
++++..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 666666666666677777777777776666666666777777777777666443
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=8.4e-17 Score=182.38 Aligned_cols=149 Identities=26% Similarity=0.292 Sum_probs=74.3
Q ss_pred cccCCCCCCCcccccCCCCCcEEEcccCcCCccCCc-ccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcC
Q 005267 178 ISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQ-CLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEG 256 (705)
Q Consensus 178 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (705)
++.|.+. ..+..+..++.|+.|+|++|.+. .+|. .+..++|++|+|++|.++ .+|..|+.+++|++|+|++|.++
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred cccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 3334443 44556666677777777777665 3333 233355666666666655 45555556666666666666655
Q ss_pred CCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCC-CCeEeccCcccccccC
Q 005267 257 PLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTS-LSFLDVGNNSLSGPIP 331 (705)
Q Consensus 257 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~ 331 (705)
.+|..|..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+.. +..+++++|.+++.+|
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 44555555666666666666554 44555555555555555555555555544433211 1124455555554444
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=1.3e-16 Score=180.75 Aligned_cols=151 Identities=28% Similarity=0.359 Sum_probs=101.8
Q ss_pred CCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCC
Q 005267 211 IPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNS 289 (705)
Q Consensus 211 ~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 289 (705)
.+..+.. ..|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|+.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3444444 77888888888877 55666667888888888888887 67777888888888888888887 567778888
Q ss_pred CCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccC--cccEEEcCCCcccccccccccCCCCccEEE
Q 005267 290 TRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNS--TLEVLDMRMNKFSGSLPQTFGKSCVLVSLK 367 (705)
Q Consensus 290 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 367 (705)
++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+... ....+++++|.+++.+|.. |+.|+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~ 365 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIE 365 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeE
Confidence 88888888888876 556668888888888888888887777666443 2234567777777666653 34455
Q ss_pred ccCC
Q 005267 368 LNGN 371 (705)
Q Consensus 368 L~~n 371 (705)
++.|
T Consensus 366 l~~n 369 (727)
T 4b8c_D 366 INTD 369 (727)
T ss_dssp ----
T ss_pred eecc
Confidence 5554
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=1.1e-15 Score=157.04 Aligned_cols=260 Identities=15% Similarity=0.132 Sum_probs=141.4
Q ss_pred CCCcEEEcccCCCCCCCcccccC-CCCCcEEEcccCcCC--ccCCcccCCCCCCEEEcCCCcCCcccchhccC-------
Q 005267 171 PHMVQLSISNNSLTGEIPSSFCN-LSSIQYLYLSNNSLS--GQIPQCLGNSTLENLDLGMNNFQGTIPQTYAK------- 240 (705)
Q Consensus 171 ~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~ls~n~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------- 240 (705)
.+++.|.++++ +.......+.. +++|++|||++|++. ...+..+ +.++.+.+..+. ..+..|.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~--~~~~~~~~~~~~---I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY--PNGKFYIYMANF---VPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS--GGGCCEEECTTE---ECTTTTEEEETTEEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc--cccccccccccc---cCHHHhccccccccc
Confidence 34556666543 11111122333 677778888877766 1111111 223444444442 22345555
Q ss_pred -CCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCcc----ccCCCCccccCCCC
Q 005267 241 -GCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNN----LSGPIPECLGNSTS 315 (705)
Q Consensus 241 -l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~l~~l~~ 315 (705)
+++|+.++|.+ .++.+.+.+|.+|++|+.+++++|.+....+.+|.++.++..+....+. .......+|.++..
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 78888888887 7776666778888888888888887776677777777777666655522 12223344555555
Q ss_pred CC-eEeccCcccc--------------------c-----ccCccc-ccCcccEEEcCCCcccccccccccCCCCccEEEc
Q 005267 316 LS-FLDVGNNSLS--------------------G-----PIPEYL-GNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKL 368 (705)
Q Consensus 316 L~-~L~l~~n~l~--------------------~-----~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 368 (705)
|+ .+.+....-. + ...... ...+|+.+++++|.++.+.+.+|.++.+|+.+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 55 3333221100 0 000000 1235666666666666555556666666666666
Q ss_pred cCCcCCCCCCccccCCCCCc-EEEccCCcCCCCcchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEE
Q 005267 369 NGNRLEGPLPPSLVNCRHLE-VIDVGNNQINETFPHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIID 441 (705)
Q Consensus 369 ~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 441 (705)
.+| +..+.+.+|.+|++|+ .+++.+ .++.+.+.+|.++++|+.+++++|++....+..+ ..+++|+.+.
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF--~~~~~L~~ly 327 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF--GNGVPSKLIY 327 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT--CTTCCCCEEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh--cCCcchhhhc
Confidence 665 5545555666666666 666665 5555555566666666666666666554444333 4455555543
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=3.7e-16 Score=160.60 Aligned_cols=217 Identities=11% Similarity=0.117 Sum_probs=128.9
Q ss_pred CCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCc----CcCCCCccCCCCCcC
Q 005267 194 LSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNH----LEGPLPPSLSNCVNL 268 (705)
Q Consensus 194 l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L 268 (705)
+++|+.+++.+ .++...+.+|.. ++|+.+++++|.+....+..|..+.++.++.+..+. ........|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66677777666 555444444544 667777777766665666667666666666655422 121223345555666
Q ss_pred c-EEEccCCcCCCCCCccc----cCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccC-cccEE
Q 005267 269 Q-VLDVGNNNLSGPIPECL----GNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNS-TLEVL 342 (705)
Q Consensus 269 ~-~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L 342 (705)
+ .+.+.... .++..+ ....+++.+.+.++-...........+++|+.+++++|+++...+..|..+ +|+.+
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 5 44443321 111111 123344555554432111111111235667777777666664444444443 67777
Q ss_pred EcCCCcccccccccccCCCCcc-EEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEc
Q 005267 343 DMRMNKFSGSLPQTFGKSCVLV-SLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTL 416 (705)
Q Consensus 343 ~l~~n~l~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 416 (705)
++.+| +..+.+.+|.++.+|+ .+++.+ .++.+.+.+|.+|++|+.+++++|+++.+.+.+|.++++|+.++.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 77666 5556667788888888 888887 666666778888888888888888888877788888888888763
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=9.4e-15 Score=137.13 Aligned_cols=91 Identities=25% Similarity=0.280 Sum_probs=85.6
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEe
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 580 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 580 (705)
+++|+.|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 67899999999999998888999999999999999999998889999999999999999999987777899999999999
Q ss_pred cccCcccccCC
Q 005267 581 LSNNQLEGPIP 591 (705)
Q Consensus 581 ls~N~l~g~ip 591 (705)
+++|++.|.++
T Consensus 133 L~~N~~~C~c~ 143 (193)
T 2wfh_A 133 IGANPLYCDCN 143 (193)
T ss_dssp CCSSCEECSGG
T ss_pred eCCCCeecCCc
Confidence 99999998775
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=7.5e-15 Score=134.81 Aligned_cols=133 Identities=24% Similarity=0.259 Sum_probs=68.4
Q ss_pred CCCCcEEEcccCCCC-CCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEE
Q 005267 170 PPHMVQLSISNNSLT-GEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLR 248 (705)
Q Consensus 170 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 248 (705)
++++++|++++|.++ +.+|..+..+++|++|++++|.+++. +.....++|++|++++|.+++.+|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 355666666666665 45555566666666666666666543 2211225555555555555544455454555555555
Q ss_pred CcCCcCcCCC-CccCCCCCcCcEEEccCCcCCCCCC---ccccCCCCCcEEEccCcccc
Q 005267 249 LSGNHLEGPL-PPSLSNCVNLQVLDVGNNNLSGPIP---ECLGNSTRLSFLDVRNNNLS 303 (705)
Q Consensus 249 L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~ 303 (705)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555555321 1344455555555555555543322 24444445555555444443
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=1e-14 Score=133.94 Aligned_cols=132 Identities=23% Similarity=0.178 Sum_probs=86.3
Q ss_pred CCCCcEEEcccCcCC-ccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEE
Q 005267 194 LSSIQYLYLSNNSLS-GQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVL 271 (705)
Q Consensus 194 l~~L~~L~ls~n~~~-~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (705)
.++|++|++++|.++ +.+|..+.. ++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 366777777777776 555655444 6777777777776654 566667777777777777765566666666777777
Q ss_pred EccCCcCCCCC-CccccCCCCCcEEEccCccccCCCC---ccccCCCCCCeEeccCcccc
Q 005267 272 DVGNNNLSGPI-PECLGNSTRLSFLDVRNNNLSGPIP---ECLGNSTSLSFLDVGNNSLS 327 (705)
Q Consensus 272 ~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~ 327 (705)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777766432 2556666777777777777665444 35666667777777666654
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=2.2e-13 Score=142.79 Aligned_cols=269 Identities=12% Similarity=0.104 Sum_probs=160.3
Q ss_pred CCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEec
Q 005267 242 CNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDV 321 (705)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 321 (705)
..++.+.+.++ ++.....+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.+ .++.....+|.++++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 44555555442 333344455554 5666666554 444444555553 566666664 455455566777777777777
Q ss_pred cCcccccccCcccccCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCc
Q 005267 322 GNNSLSGPIPEYLGNSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETF 401 (705)
Q Consensus 322 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 401 (705)
..|.++......+....|+.+.+..+ +..+...+|.++.+|+.+++..+ ++.+...+|.+ .+|+.+++. +.++...
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~ 263 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIA 263 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEEC
T ss_pred CCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEC
Confidence 77666655444555456777776633 55555667777777777777764 44444556666 567777773 4455555
Q ss_pred chhhhCCCCCCEEEccCCcCcCCCCCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCccccccccccccc
Q 005267 402 PHWLDVLPELQVLTLRSNRFCGPIGDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYS 481 (705)
Q Consensus 402 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 481 (705)
..+|..+++|+.+.+.+|.+.... . ..++...+
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~---------------------~-~~I~~~aF------------------------- 296 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDP---------------------E-AMIHPYCL------------------------- 296 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCT---------------------T-CEECTTTT-------------------------
T ss_pred hhHhhCCCCCCEEEeCCccccCCc---------------------c-cEECHHHh-------------------------
Confidence 566666666666666655442000 0 00111111
Q ss_pred ceeeEEEEecCchHHHhhhhccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCc
Q 005267 482 YYESISLTMKGNDIQMERILTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNK 561 (705)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 561 (705)
..+++|+.++|. +.++......|.++++|+.++|..| ++...+.+|.++ +|+.+++++|.
T Consensus 297 -----------------~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 297 -----------------EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp -----------------TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred -----------------hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 114556666666 3455555667778888888888554 665667778877 88888888887
Q ss_pred CCCcCcccccCCC-CCCeEecccCcc
Q 005267 562 LAGRIPTQLASLN-YLSVLNLSNNQL 586 (705)
Q Consensus 562 l~~~~p~~l~~l~-~L~~L~ls~N~l 586 (705)
+....+..|.+++ .++.+.+..+.+
T Consensus 357 ~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 357 PPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CcccccccccCCCCCccEEEeCHHHH
Confidence 7766666777764 667777766543
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=5.7e-14 Score=131.77 Aligned_cols=128 Identities=25% Similarity=0.323 Sum_probs=91.7
Q ss_pred cEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCc
Q 005267 198 QYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNN 277 (705)
Q Consensus 198 ~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 277 (705)
++++++++.++ .+|..+. ++|++|++++|.++ .+|..|..+++|++|+|++|.+++..+..|..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~-~ip~~~~-~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP-RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC-TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCC-cCCCCCC-CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 35566666555 3443322 46666666666666 455677777788888888888877666777788888888888888
Q ss_pred CCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCccccc
Q 005267 278 LSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSG 328 (705)
Q Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 328 (705)
+++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 877777777788888888888888876666667778888888888877653
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=1.9e-13 Score=143.40 Aligned_cols=261 Identities=11% Similarity=0.092 Sum_probs=147.5
Q ss_pred CCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcC
Q 005267 172 HMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSG 251 (705)
Q Consensus 172 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 251 (705)
.++.+.+.+ .++.....+|.++ +|+.+.+..+ ++.....+|...+|+.+.+.. .+....+..|.+|++|+.+++.+
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence 344444432 2333444455554 5666666554 443444445445666666664 45545556666666666666666
Q ss_pred CcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccC
Q 005267 252 NHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIP 331 (705)
Q Consensus 252 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 331 (705)
|.++......|. +.+|+.+.+..+ +......+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++....
T Consensus 190 n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~ 264 (401)
T 4fdw_A 190 TKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIAS 264 (401)
T ss_dssp SCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECT
T ss_pred CcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEECh
Confidence 666644444444 466666666533 44445556666666666666653 34344455555 566666663 33333333
Q ss_pred cccccC-cccEEEcCCCccc-----ccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhh
Q 005267 332 EYLGNS-TLEVLDMRMNKFS-----GSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWL 405 (705)
Q Consensus 332 ~~~~~~-~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 405 (705)
..+..+ +|+.+++.+|.+. ...+.+|.+|++|+.+.+.+ .+..+...+|.+|++|+.+++..+ ++.+...+|
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 333332 6666666555443 34456677777777777773 455555567777777777777544 555556667
Q ss_pred hCCCCCCEEEccCCcCcCCCCCCCCCCCC-CCccEEEccCCc
Q 005267 406 DVLPELQVLTLRSNRFCGPIGDTKTRVPF-PKLRIIDLSYNQ 446 (705)
Q Consensus 406 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~ls~n~ 446 (705)
..+ +|+.+.+.+|.........+ ..+ ..++.|.+..+.
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~~~F--~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFEKVW--YGFPDDITVIRVPAES 381 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCCSSC--CCSCTTCCEEEECGGG
T ss_pred CCC-CCCEEEEcCCCCcccccccc--cCCCCCccEEEeCHHH
Confidence 777 77777777776654433333 233 255666665543
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=8.6e-15 Score=131.45 Aligned_cols=86 Identities=26% Similarity=0.270 Sum_probs=40.1
Q ss_pred hccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCC-CCccccCCCCCcEEEccCccccCCCC---ccccC
Q 005267 237 TYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGP-IPECLGNSTRLSFLDVRNNNLSGPIP---ECLGN 312 (705)
Q Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~ 312 (705)
.+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..++.+++|++|++++|.+++..+ ..+..
T Consensus 59 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 59 NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL 138 (149)
T ss_dssp TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHH
T ss_pred hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHH
Confidence 344444444444444444443444444444455555555544432 12344445555555555555544333 24455
Q ss_pred CCCCCeEecc
Q 005267 313 STSLSFLDVG 322 (705)
Q Consensus 313 l~~L~~L~l~ 322 (705)
+++|+.|+++
T Consensus 139 l~~L~~L~l~ 148 (149)
T 2je0_A 139 LPQLTYLDGY 148 (149)
T ss_dssp CTTCCEETTB
T ss_pred CCCcccccCC
Confidence 5555555543
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=7.9e-14 Score=129.15 Aligned_cols=132 Identities=21% Similarity=0.230 Sum_probs=85.5
Q ss_pred cEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCc
Q 005267 198 QYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNN 277 (705)
Q Consensus 198 ~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 277 (705)
+.++++++.++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~-~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCc-cCCCCCC-CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 44555555554 2332221 456666666666665555566677777777777777775555556777777777777777
Q ss_pred CCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccC
Q 005267 278 LSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIP 331 (705)
Q Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 331 (705)
+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 776666666777777777777777776555556677777777777777765443
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=8.9e-15 Score=131.34 Aligned_cols=128 Identities=24% Similarity=0.313 Sum_probs=106.0
Q ss_pred CCCCcEEEcccCCCC-CCCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEE
Q 005267 170 PPHMVQLSISNNSLT-GEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYL 247 (705)
Q Consensus 170 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 247 (705)
++++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.. ++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888888888887 67777888899999999999988865 34443 899999999999988788888889999999
Q ss_pred ECcCCcCcCC-CCccCCCCCcCcEEEccCCcCCCCCC---ccccCCCCCcEEEccC
Q 005267 248 RLSGNHLEGP-LPPSLSNCVNLQVLDVGNNNLSGPIP---ECLGNSTRLSFLDVRN 299 (705)
Q Consensus 248 ~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~ 299 (705)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999863 34778899999999999999987655 4788899999998864
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.1e-13 Score=128.11 Aligned_cols=129 Identities=20% Similarity=0.205 Sum_probs=67.8
Q ss_pred EEEccCCcCCCCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcc
Q 005267 154 FLTLDSNLLQGSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGT 233 (705)
Q Consensus 154 ~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 233 (705)
.++++++.++......++++++|++++|.+++..+..|..+++|++|++++|.++ +.
T Consensus 11 ~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------------------~~ 67 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-----------------------SL 67 (177)
T ss_dssp EEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-----------------------CC
T ss_pred EEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-----------------------Ee
Confidence 3444444444332223344555555555555444444455555555555555544 34
Q ss_pred cchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCC
Q 005267 234 IPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGP 305 (705)
Q Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 305 (705)
.+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 68 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 444455555666666666666554444555566666666666666544444455566666666666665543
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=7.5e-14 Score=128.05 Aligned_cols=92 Identities=25% Similarity=0.270 Sum_probs=86.3
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEe
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 580 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 580 (705)
.+.+++|+|++|++++..|..|+++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 46789999999999999999999999999999999999988888899999999999999999988888899999999999
Q ss_pred cccCcccccCCC
Q 005267 581 LSNNQLEGPIPG 592 (705)
Q Consensus 581 ls~N~l~g~ip~ 592 (705)
+++|++.+.++.
T Consensus 109 L~~N~~~c~c~~ 120 (170)
T 3g39_A 109 LLNNPWDCACSD 120 (170)
T ss_dssp CCSSCBCTTBGG
T ss_pred eCCCCCCCCchh
Confidence 999999998874
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.3e-13 Score=127.45 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=65.1
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCc--cccCCCCCCeeeCCCCcCCCcCccc----ccCCC
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPS--SLRNLTELESLDLSSNKLAGRIPTQ----LASLN 574 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~ 574 (705)
+++|++|++++|++++..+..++.+++|++|+|++|.++ .+|. .+..+++|+.|++++|+++ .+|.. +..++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVP 140 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCT
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCC
Confidence 456677777777777665555678888888888888886 4554 7788888888888888887 45553 78888
Q ss_pred CCCeEecccCcccc
Q 005267 575 YLSVLNLSNNQLEG 588 (705)
Q Consensus 575 ~L~~L~ls~N~l~g 588 (705)
+|++|++++|....
T Consensus 141 ~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 141 QVRVLDFQKVKLKE 154 (176)
T ss_dssp TCSEETTEECCHHH
T ss_pred ccceeCCCcCCHHH
Confidence 88888888887654
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.46 E-value=3.4e-12 Score=134.49 Aligned_cols=329 Identities=10% Similarity=0.090 Sum_probs=173.8
Q ss_pred ccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCccCCCCCCEEecCCCCCCCCC-hh
Q 005267 20 GSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFP-DI 98 (705)
Q Consensus 20 ~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~ 98 (705)
.+-..+|.++.+|+.+.+..+ ++ .|+..+|.++++|+.+++.++ +..++.. .+.++.+|+.+.+..+ +..+. .+
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~-aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRC-TFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTT-TTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccch-hhcccccchhhcccCc-eeeeccee
Confidence 344567888888999988744 65 788888888899999988764 2222221 1226777877766544 32222 34
Q ss_pred ccCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCC---CCCCCCcEEEccCCcCCCCCCCCCCCCcE
Q 005267 99 LKTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDH---LPWKNLEFLTLDSNLLQGSLPNLPPHMVQ 175 (705)
Q Consensus 99 l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~L~~ 175 (705)
|..+..++......... .-...+..+ ++|+.+.+..+. ..+.. ..+. +|+.
T Consensus 136 F~~~~~~~~~~~~~~~~--i~~~aF~~c--~~L~~i~l~~~~-~~I~~~~F~~c~---------------------~L~~ 189 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTV--IGDEAFATC--ESLEYVSLPDSM-ETLHNGLFSGCG---------------------KLKS 189 (394)
T ss_dssp TTTCCCSEEECCTTCCE--ECTTTTTTC--TTCCEEECCTTC-CEECTTTTTTCT---------------------TCCB
T ss_pred eecccccccccCccccc--cchhhhccc--CCCcEEecCCcc-ceeccccccCCC---------------------CceE
Confidence 55554333322222111 112223333 556666654332 11111 2223 3333
Q ss_pred EEcccCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCc
Q 005267 176 LSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLE 255 (705)
Q Consensus 176 L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (705)
+++..+ ++.....+|.++..|+.+.+..+... .....+....|+.+.+... ++......|..+..++.+.+..+...
T Consensus 190 i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~ 266 (394)
T 4fs7_A 190 IKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR 266 (394)
T ss_dssp CCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE
T ss_pred EEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce
Confidence 333332 23233456667777777666654322 2223333466666666543 23234455666677777777665443
Q ss_pred CCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccc
Q 005267 256 GPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLG 335 (705)
Q Consensus 256 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (705)
.....|..+..++.+......+. ...|..+.+|+.+.+.++ ++.....+|.++.+|+.+++..+ +
T Consensus 267 -i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v--------- 331 (394)
T 4fs7_A 267 -IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V--------- 331 (394)
T ss_dssp -ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C---------
T ss_pred -eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-c---------
Confidence 44556666677776666554322 234556666666666543 44344556666666666665432 2
Q ss_pred cCcccEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEE
Q 005267 336 NSTLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVL 414 (705)
Q Consensus 336 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 414 (705)
+.+...+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ +. .+...|.++++|+.+
T Consensus 332 --------------~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 332 --------------EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp --------------CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred --------------cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 2233345555666666666544 44344456666666666666543 11 123345555555543
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=1.7e-13 Score=126.05 Aligned_cols=92 Identities=25% Similarity=0.254 Sum_probs=85.0
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEe
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 580 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 580 (705)
.++|++|+|++|++++.+|..|+++++|++|+|++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|++|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 46789999999999999999999999999999999999987777789999999999999999977777799999999999
Q ss_pred cccCcccccCCC
Q 005267 581 LSNNQLEGPIPG 592 (705)
Q Consensus 581 ls~N~l~g~ip~ 592 (705)
+++|++.+.++.
T Consensus 112 L~~N~~~c~~~~ 123 (174)
T 2r9u_A 112 LYNNPWDCECRD 123 (174)
T ss_dssp CCSSCBCTTBGG
T ss_pred eCCCCccccccc
Confidence 999999987763
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1.2e-13 Score=127.71 Aligned_cols=133 Identities=16% Similarity=0.152 Sum_probs=95.5
Q ss_pred cccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcC
Q 005267 190 SFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNL 268 (705)
Q Consensus 190 ~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (705)
.+.++++|++|++++|.++ .++..... ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4566777888888888777 34544333 4788888888877754 567778888888888888875544555778888
Q ss_pred cEEEccCCcCCCCCCc--cccCCCCCcEEEccCccccCCCCc----cccCCCCCCeEeccCcccc
Q 005267 269 QVLDVGNNNLSGPIPE--CLGNSTRLSFLDVRNNNLSGPIPE----CLGNSTSLSFLDVGNNSLS 327 (705)
Q Consensus 269 ~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~ 327 (705)
++|++++|.+. .+|. .+..+++|+.|++++|.++. .|. .+..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888888875 3454 67778888888888888774 344 3777788888888877654
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=2.9e-15 Score=141.63 Aligned_cols=83 Identities=27% Similarity=0.286 Sum_probs=58.5
Q ss_pred hccccEEEccCCccccccchhhhcCCCCCEEecCCCcCCccCC-ccccCCCCCCeeeCCCCcCCCcCccc----------
Q 005267 501 LTTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNNLTGGIP-SSLRNLTELESLDLSSNKLAGRIPTQ---------- 569 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~---------- 569 (705)
+++|++|++++|++++. | .++.+++|++|++++|++++..+ ..+..+++|++|++++|++.+.+|..
T Consensus 92 ~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 46777788888877763 3 57777788888888888775332 46777788888888888877665543
Q ss_pred ccCCCCCCeEecccCccc
Q 005267 570 LASLNYLSVLNLSNNQLE 587 (705)
Q Consensus 570 l~~l~~L~~L~ls~N~l~ 587 (705)
+..+++|++|| +|+++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 67777888776 55554
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.41 E-value=5.6e-12 Score=132.81 Aligned_cols=133 Identities=11% Similarity=0.042 Sum_probs=64.8
Q ss_pred CCcccccCCCCCcEEEcccCcCCccCCcccCC-CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCC
Q 005267 186 EIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGN-STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSN 264 (705)
Q Consensus 186 ~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (705)
....+|.++++|+.+.+..+ ++.....+|.. .+|+.+++..+ ++......|..+.+|+.+.+..+ +......+|.+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 34455666666666666533 44333444443 56666666543 34344455666666666555433 22233344544
Q ss_pred CCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCc
Q 005267 265 CVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNN 324 (705)
Q Consensus 265 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 324 (705)
+..+........ ......+|.++++|+.+.+.++. ......+|.++.+|+.+++..+
T Consensus 139 ~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 139 CDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp CCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT
T ss_pred ccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC
Confidence 433322222211 11223455566666666665432 2233445566666666655443
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=4.8e-15 Score=140.14 Aligned_cols=84 Identities=21% Similarity=0.270 Sum_probs=40.7
Q ss_pred CCCCCEEECcCCcCcCCCCc------cCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCC
Q 005267 241 GCNLTYLRLSGNHLEGPLPP------SLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNST 314 (705)
Q Consensus 241 l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 314 (705)
...++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34444444444444444333 44555555555555555543 33 4445555555555555554 2344444444
Q ss_pred CCCeEeccCcccc
Q 005267 315 SLSFLDVGNNSLS 327 (705)
Q Consensus 315 ~L~~L~l~~n~l~ 327 (705)
+|+.|++++|.++
T Consensus 94 ~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 94 TLEELWISYNQIA 106 (198)
T ss_dssp HCSEEEEEEEECC
T ss_pred cCCEEECcCCcCC
Confidence 5555555555444
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=7.6e-12 Score=114.58 Aligned_cols=87 Identities=23% Similarity=0.230 Sum_probs=46.1
Q ss_pred CCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEec
Q 005267 242 CNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDV 321 (705)
Q Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 321 (705)
++|++|+|++|++++..|..|..+++|++|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34555555555555444445555555555555555555444444555555555555555555444444555555555555
Q ss_pred cCccccc
Q 005267 322 GNNSLSG 328 (705)
Q Consensus 322 ~~n~l~~ 328 (705)
++|.+..
T Consensus 110 ~~N~~~c 116 (170)
T 3g39_A 110 LNNPWDC 116 (170)
T ss_dssp CSSCBCT
T ss_pred CCCCCCC
Confidence 5555543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.6e-11 Score=112.83 Aligned_cols=104 Identities=20% Similarity=0.242 Sum_probs=46.5
Q ss_pred cEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCc
Q 005267 198 QYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNN 277 (705)
Q Consensus 198 ~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 277 (705)
+.+++++|.+. .+|..+. ++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~-~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCC-ccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 34555555443 3333222 344444444444444444444444555555555555443333334444444444444444
Q ss_pred CCCCCCccccCCCCCcEEEccCcccc
Q 005267 278 LSGPIPECLGNSTRLSFLDVRNNNLS 303 (705)
Q Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~l~ 303 (705)
+++..+..|..+++|++|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 44333333444444444444444443
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=3.1e-13 Score=140.35 Aligned_cols=88 Identities=22% Similarity=0.265 Sum_probs=63.7
Q ss_pred hccccEEEccCCccccc----cchhhhcCCCCCEEecCCCcCCccC----CccccCCCCCCeeeCCCCcCCCc----Ccc
Q 005267 501 LTTFATIDLSSNRFQGE----ISEVLGKLNSLKSLNISHNNLTGGI----PSSLRNLTELESLDLSSNKLAGR----IPT 568 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~----~p~ 568 (705)
.+.|++|+|++|.++.. ++..+...++|++|+|++|.+++.. +..+...++|++|||++|.++.. ++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 45678888888887653 3344567788888888888887532 45666778888888888888753 334
Q ss_pred cccCCCCCCeEecccCcccc
Q 005267 569 QLASLNYLSVLNLSNNQLEG 588 (705)
Q Consensus 569 ~l~~l~~L~~L~ls~N~l~g 588 (705)
.+...++|++|++++|+++.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 45566888888888888764
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.24 E-value=8.7e-10 Score=115.96 Aligned_cols=125 Identities=10% Similarity=0.185 Sum_probs=74.4
Q ss_pred CCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEc
Q 005267 218 STLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDV 297 (705)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 297 (705)
..|+.+.+..+... .....|.+++.|+.+.+.. .++.....+|.+|.+|+.+++..+ ++.....+|.+|++|+.+.+
T Consensus 265 ~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 66666666554332 4556677777777777753 344445567777788888877654 44455567777888888887
Q ss_pred cCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcccEEEcCCCc
Q 005267 298 RNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTLEVLDMRMNK 348 (705)
Q Consensus 298 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 348 (705)
..+ ++.....+|.++++|+.+++.++.... ........|+.+.+..+.
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence 644 555556778888888888887765431 223334467777665543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=3.5e-13 Score=139.87 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=71.9
Q ss_pred CCCcEEEcccCCCCCCCcccccC-----CCCCcEEEcccCcCCccCCcccCC--CCCCEEEcCCCcCCcccchhc-----
Q 005267 171 PHMVQLSISNNSLTGEIPSSFCN-----LSSIQYLYLSNNSLSGQIPQCLGN--STLENLDLGMNNFQGTIPQTY----- 238 (705)
Q Consensus 171 ~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~ls~n~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~----- 238 (705)
+.+++|++++|.++......+.. .++|++|+|++|.++......+.. .+|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 34555555555554322222221 246666666666554322222211 455566666665554333333
Q ss_pred cCCCCCCEEECcCCcCcCC----CCccCCCCCcCcEEEccCCcCCCC----CCccccCCCCCcEEEccCccccCC----C
Q 005267 239 AKGCNLTYLRLSGNHLEGP----LPPSLSNCVNLQVLDVGNNNLSGP----IPECLGNSTRLSFLDVRNNNLSGP----I 306 (705)
Q Consensus 239 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~ 306 (705)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+.+. ++..+...++|++|+|++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345566666666655431 222334455555555555555422 123334444555555555555432 1
Q ss_pred CccccCCCCCCeEeccCcccc
Q 005267 307 PECLGNSTSLSFLDVGNNSLS 327 (705)
Q Consensus 307 ~~~l~~l~~L~~L~l~~n~l~ 327 (705)
+..+...++|+.|++++|.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 122333444555555555443
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=3.3e-11 Score=124.71 Aligned_cols=90 Identities=23% Similarity=0.230 Sum_probs=83.6
Q ss_pred hccccEEEccC-CccccccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeE
Q 005267 501 LTTFATIDLSS-NRFQGEISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVL 579 (705)
Q Consensus 501 l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 579 (705)
+++|+.|+|++ |.+++.++..|+++++|++|+|++|+|++..|..|.++++|+.|||++|+|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 57899999996 999999989999999999999999999999999999999999999999999987777777777 9999
Q ss_pred ecccCcccccCC
Q 005267 580 NLSNNQLEGPIP 591 (705)
Q Consensus 580 ~ls~N~l~g~ip 591 (705)
++++|++.+.++
T Consensus 109 ~l~~N~~~c~c~ 120 (347)
T 2ifg_A 109 VLSGNPLHCSCA 120 (347)
T ss_dssp ECCSSCCCCCGG
T ss_pred EeeCCCccCCCc
Confidence 999999998775
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.18 E-value=2e-09 Score=113.19 Aligned_cols=329 Identities=13% Similarity=0.145 Sum_probs=140.2
Q ss_pred ccCcCCC-CCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCc-c-CCCCCCEEecCCCCCCCCC-hhc
Q 005267 24 SSIFELV-NLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVN-S-SFPNLWALGLSACNISEFP-DIL 99 (705)
Q Consensus 24 ~~l~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~-~l~~L~~L~L~~n~l~~lp-~~l 99 (705)
.+|.++. .|+.+.+..+ ++ .|...+|.++++|+.+.+.++.-.....+... + .+.+|+.+.+..+ +..++ ..+
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred hhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 3455553 4666666543 44 56666666677777766655421111222111 1 4555555554432 22232 244
Q ss_pred cCCCCCCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCCCCCCCCCCcEEEccCCcCCCCCCCCCCCCcEEEcc
Q 005267 100 KTQHQLDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSIDHLPWKNLEFLTLDSNLLQGSLPNLPPHMVQLSIS 179 (705)
Q Consensus 100 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~ 179 (705)
..+.+|+.+.+..+. .......+... ..|+.+.+..+ ++.+....+ ...+|+.+.+.
T Consensus 134 ~~c~~L~~i~lp~~~-~~I~~~~F~~c--~~L~~i~~~~~-~~~I~~~aF-------------------~~~~l~~i~ip 190 (394)
T 4gt6_A 134 HHCEELDTVTIPEGV-TSVADGMFSYC--YSLHTVTLPDS-VTAIEERAF-------------------TGTALTQIHIP 190 (394)
T ss_dssp TTCTTCCEEECCTTC-CEECTTTTTTC--TTCCEEECCTT-CCEECTTTT-------------------TTCCCSEEEEC
T ss_pred hhhccccccccccee-eeecccceecc--cccccccccce-eeEeccccc-------------------cccceeEEEEC
Confidence 555555555554321 11111122222 44444444322 111111000 02345555554
Q ss_pred cCCCCCCCcccccCCCCCcEEEcccCcCCccCCcccCCCCCCEEEcCCCcCCcccchhccCCCCCCEEECcCCcCcCCCC
Q 005267 180 NNSLTGEIPSSFCNLSSIQYLYLSNNSLSGQIPQCLGNSTLENLDLGMNNFQGTIPQTYAKGCNLTYLRLSGNHLEGPLP 259 (705)
Q Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (705)
.+-. .....+|..+..++........... +...+.. .+.........+.....+..+.+... +.....
T Consensus 191 ~~~~-~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~ 258 (394)
T 4gt6_A 191 AKVT-RIGTNAFSECFALSTITSDSESYPA-IDNVLYE---------KSANGDYALIRYPSQREDPAFKIPNG-VARIET 258 (394)
T ss_dssp TTCC-EECTTTTTTCTTCCEEEECCSSSCB-SSSCEEE---------ECTTSCEEEEECCTTCCCSEEECCTT-EEEECT
T ss_pred Cccc-ccccchhhhccccceeccccccccc-ccceeec---------ccccccccccccccccccceEEcCCc-ceEccc
Confidence 3322 2344556667777766655443321 1111100 00000000001112223333333321 222333
Q ss_pred ccCCCCCcCcEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCCCCeEeccCcccccccCcccccCcc
Q 005267 260 PSLSNCVNLQVLDVGNNNLSGPIPECLGNSTRLSFLDVRNNNLSGPIPECLGNSTSLSFLDVGNNSLSGPIPEYLGNSTL 339 (705)
Q Consensus 260 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L 339 (705)
.+|.++..|+.+.+..+... ....+|.++++|+.+.+. +.++.....+|.++.+|+.+++..+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--------------- 321 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--------------- 321 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT---------------
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc---------------
Confidence 45556666666665443322 333445555666666554 2333334445555555555555332
Q ss_pred cEEEcCCCcccccccccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhhCCCCCCEEEccCC
Q 005267 340 EVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLDVLPELQVLTLRSN 419 (705)
Q Consensus 340 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 419 (705)
++.+...+|.+|.+|+.+.+..+ ++.+-..+|.+|++|+.+++.++... ...+..+.+|+.+.+..+
T Consensus 322 ---------v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 322 ---------ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp ---------CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred ---------ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 22233345666666666666443 44344456666666666666665431 123445566666666554
Q ss_pred c
Q 005267 420 R 420 (705)
Q Consensus 420 ~ 420 (705)
.
T Consensus 389 ~ 389 (394)
T 4gt6_A 389 S 389 (394)
T ss_dssp -
T ss_pred C
Confidence 3
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.08 E-value=2e-10 Score=118.69 Aligned_cols=107 Identities=25% Similarity=0.195 Sum_probs=89.8
Q ss_pred cEEEccCC-ccccccchhhhcCCCCCEEecCC-CcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecc
Q 005267 505 ATIDLSSN-RFQGEISEVLGKLNSLKSLNISH-NNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS 582 (705)
Q Consensus 505 ~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 582 (705)
..++++++ .+++ +|. +..+++|++|+|++ |.+++..+..|+++++|+.|+|++|+|++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35788998 8885 666 99999999999996 99998888999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCCCCCCCCcccCCCCCCCC
Q 005267 583 NNQLEGPIPGGPQFNTFGIDSYSGNVGLCGF 613 (705)
Q Consensus 583 ~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~ 613 (705)
+|+|++..|.......+....+.+|+.-|.+
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 9999976554333223444556778777764
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.93 E-value=6.6e-08 Score=101.04 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=64.0
Q ss_pred CcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCCCCcceecccCccCCCCCCEEecCCCCCCCCCh-hccCCCC
Q 005267 26 IFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNISLSVSTKLTVNSSFPNLWALGLSACNISEFPD-ILKTQHQ 104 (705)
Q Consensus 26 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~ 104 (705)
+....+|+.+.+... ++ .|+..+|.++.+|+.++|.++ +..++.-.. .++ +|+.+.+..+ +..++. +|.. .+
T Consensus 42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF-~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAF-ADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTT-TTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhh-cCC-CCceEECCce-eeEeccceecc-CC
Confidence 444567777777643 54 677777788888888888654 232322221 133 5666666543 444443 3333 36
Q ss_pred CCEEEccCCcCCCCCchHHHhcCCCCccEEECCCCCCCCC---CCCCCCCCcEEEccCC
Q 005267 105 LDWLDLSENQIRGRIPSWMWDIGVHTLFRLDLSRNFLTSI---DHLPWKNLEFLTLDSN 160 (705)
Q Consensus 105 L~~L~Ls~n~~~~~~~~~l~~l~~~~L~~L~ls~n~l~~~---~~~~~~~L~~L~l~~n 160 (705)
|+.+++..+-. .+....... .+++.+.+..+ ++.+ ....+.+++...+..+
T Consensus 115 L~~i~lp~~~~--~i~~~~F~~--~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 115 LDDFEFPGATT--EIGNYIFYN--SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp CSEEECCTTCC--EECTTTTTT--CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTT
T ss_pred cccccCCCccc--ccccccccc--ceeeeeeccce-eeccccchhcccccccccccccc
Confidence 88887765422 122222111 34555554433 2222 1245566666665543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.85 E-value=5.1e-07 Score=94.25 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=38.5
Q ss_pred ccchhhhcCCCCCEEecCCCcCCccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEeccc
Q 005267 517 EISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSN 583 (705)
Q Consensus 517 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 583 (705)
.....|.++++|+.+++.++.++.....+|.++++|++++|..+ ++..-..+|.++++|+.+.+..
T Consensus 277 i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 277 VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 33445566666666666666666555566666666666666543 4434445666666666665543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=1.2e-09 Score=112.31 Aligned_cols=62 Identities=18% Similarity=0.271 Sum_probs=29.1
Q ss_pred ccccEEEccCCccccccchhhh---cCCCCCEEecCCCcCCcc----CCccccCCCCCCeeeCCCCcCC
Q 005267 502 TTFATIDLSSNRFQGEISEVLG---KLNSLKSLNISHNNLTGG----IPSSLRNLTELESLDLSSNKLA 563 (705)
Q Consensus 502 ~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 563 (705)
++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4455555555554433222222 244555555555555542 2223334455555555555554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=1.1e-08 Score=104.91 Aligned_cols=163 Identities=19% Similarity=0.260 Sum_probs=106.8
Q ss_pred cccccCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCCcCCCCcchhhh--CCCCCCEEEccC--CcCcCCC----
Q 005267 354 PQTFGKSCVLVSLKLNGNRLEGPLPPSLVNCRHLEVIDVGNNQINETFPHWLD--VLPELQVLTLRS--NRFCGPI---- 425 (705)
Q Consensus 354 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~~---- 425 (705)
...+..+++|+.|++++|.-. .++. +. +++|+.|++..|.+.......+. .+|+|+.|+|+. |...+..
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 345566788888888877311 2232 33 78899999998887655444444 689999998853 2221111
Q ss_pred -CCCCCCCCCCCccEEEccCCcCcccCChHhhhhccccccccCCcccccccccccccceeeEEEEecCchHHHhhhhccc
Q 005267 426 -GDTKTRVPFPKLRIIDLSYNQFTGVLPIWYLNGFKAMMRRDDNSIEVNYMRSLNYSYYESISLTMKGNDIQMERILTTF 504 (705)
Q Consensus 426 -~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 504 (705)
........+|+|+.|++++|.++...+..+... ..++.|
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a----------------------------------------~~~~~L 281 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES----------------------------------------DILPQL 281 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC----------------------------------------SSGGGC
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC----------------------------------------ccCCCC
Confidence 011112358999999999998875433221110 126899
Q ss_pred cEEEccCCcccccc----chhhhcCCCCCEEecCCCcCCccCCccccC-CCCCCeeeCCCCc
Q 005267 505 ATIDLSSNRFQGEI----SEVLGKLNSLKSLNISHNNLTGGIPSSLRN-LTELESLDLSSNK 561 (705)
Q Consensus 505 ~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~ 561 (705)
++|||+.|.+++.. +..+..+++|+.|+|++|.++...-..+.. + ...+|++.++
T Consensus 282 ~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 99999999998753 334467899999999999998654444443 2 3567787776
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=6.9e-08 Score=89.32 Aligned_cols=86 Identities=26% Similarity=0.309 Sum_probs=50.3
Q ss_pred ccccEEEccCCccccc----cchhhhcCCCCCEEecCCCcCCcc----CCccccCCCCCCeeeC--CCCcCCCc----Cc
Q 005267 502 TTFATIDLSSNRFQGE----ISEVLGKLNSLKSLNISHNNLTGG----IPSSLRNLTELESLDL--SSNKLAGR----IP 567 (705)
Q Consensus 502 ~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~----~p 567 (705)
++|++|+|++|.+... +...+...+.|++|+|++|.|++. +...+...++|++|+| ++|.+... +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 4566666666666542 223344456667777777766643 3445555666777777 66766543 23
Q ss_pred ccccCCCCCCeEecccCccc
Q 005267 568 TQLASLNYLSVLNLSNNQLE 587 (705)
Q Consensus 568 ~~l~~l~~L~~L~ls~N~l~ 587 (705)
+.+...+.|++|++++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 34445567777777777654
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=1.1e-07 Score=92.22 Aligned_cols=84 Identities=29% Similarity=0.365 Sum_probs=62.0
Q ss_pred EEccCCccc---cccchhhhcCCCCCEEecCCCcCCc--cCCccccCCCCCCeeeCCCCcCCCcCcccccCCC--CCCeE
Q 005267 507 IDLSSNRFQ---GEISEVLGKLNSLKSLNISHNNLTG--GIPSSLRNLTELESLDLSSNKLAGRIPTQLASLN--YLSVL 579 (705)
Q Consensus 507 L~Ls~n~l~---~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 579 (705)
++++.|... +.++....++++|++|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+..+. .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 667777433 2223333568899999999999987 4567777889999999999999865 3344444 89999
Q ss_pred ecccCcccccCCC
Q 005267 580 NLSNNQLEGPIPG 592 (705)
Q Consensus 580 ~ls~N~l~g~ip~ 592 (705)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999887763
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=3.5e-07 Score=88.82 Aligned_cols=79 Identities=28% Similarity=0.382 Sum_probs=66.9
Q ss_pred hhccccEEEccCCcccc--ccchhhhcCCCCCEEecCCCcCCccCCccccCCC--CCCeeeCCCCcCCCcCcc-------
Q 005267 500 ILTTFATIDLSSNRFQG--EISEVLGKLNSLKSLNISHNNLTGGIPSSLRNLT--ELESLDLSSNKLAGRIPT------- 568 (705)
Q Consensus 500 ~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~------- 568 (705)
.++.|+.|+|++|++++ .+|..++.+++|+.|+|++|+|++. ..+..++ +|++|+|++|.+.+.+|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 37899999999999998 4567788999999999999999975 4455555 999999999999987763
Q ss_pred cccCCCCCCeEe
Q 005267 569 QLASLNYLSVLN 580 (705)
Q Consensus 569 ~l~~l~~L~~L~ 580 (705)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467889999886
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.37 E-value=6.6e-08 Score=89.44 Aligned_cols=117 Identities=13% Similarity=0.028 Sum_probs=70.0
Q ss_pred ccCcCCCCCCEEeCCCC-CCccccC---cccccCCCCCCEEEccCCCCcceeccc--Ccc-CCCCCCEEecCCCCCCC--
Q 005267 24 SSIFELVNLTFVSLSFN-NFSGSVE---LYDFAKLKNLKYLILSNISLSVSTKLT--VNS-SFPNLWALGLSACNISE-- 94 (705)
Q Consensus 24 ~~l~~l~~L~~L~Ls~n-~l~~~i~---~~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~-~l~~L~~L~L~~n~l~~-- 94 (705)
..+...++|++|+|++| .+...-. ...+...++|++|+|++|.+...+... ... ..++|++|+|++|.++.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 44556677777777777 6653211 112355677777777777554333221 111 45677777777777743
Q ss_pred ---CChhccCCCCCCEEEc--cCCcCCCC----CchHHHhcCCCCccEEECCCCCCC
Q 005267 95 ---FPDILKTQHQLDWLDL--SENQIRGR----IPSWMWDIGVHTLFRLDLSRNFLT 142 (705)
Q Consensus 95 ---lp~~l~~l~~L~~L~L--s~n~~~~~----~~~~l~~l~~~~L~~L~ls~n~l~ 142 (705)
+...+...++|++|+| ++|.+... +...+... ++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n--~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN--TTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC--SSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhC--CCcCEEeccCCCCC
Confidence 4456666777888888 67777643 22333343 67788888777654
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=5.9e-07 Score=80.69 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=70.5
Q ss_pred ccccEEEccCCccccccchhhhcCCCCCEEecCCCc-CCccCCccccCC----CCCCeeeCCCCc-CCCcCcccccCCCC
Q 005267 502 TTFATIDLSSNRFQGEISEVLGKLNSLKSLNISHNN-LTGGIPSSLRNL----TELESLDLSSNK-LAGRIPTQLASLNY 575 (705)
Q Consensus 502 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 575 (705)
..|+.||++++.++...-..+.++++|++|+|++|. +++..-..++.+ ++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999999988777778999999999999995 887555566654 379999999995 77655567889999
Q ss_pred CCeEecccCc
Q 005267 576 LSVLNLSNNQ 585 (705)
Q Consensus 576 L~~L~ls~N~ 585 (705)
|++|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=7.2e-06 Score=73.59 Aligned_cols=82 Identities=10% Similarity=0.028 Sum_probs=42.0
Q ss_pred cccEEEcCCCcccccccccccCCCCccEEEccCCc-CCCCCCccccCC----CCCcEEEccCCc-CCCCcchhhhCCCCC
Q 005267 338 TLEVLDMRMNKFSGSLPQTFGKSCVLVSLKLNGNR-LEGPLPPSLVNC----RHLEVIDVGNNQ-INETFPHWLDVLPEL 411 (705)
Q Consensus 338 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L 411 (705)
.|+.||+++|.++..--..+..+++|+.|+|++|. +++.--..+..+ ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56666666666554444445556666666666663 443222223332 346666666653 554433444445555
Q ss_pred CEEEccCC
Q 005267 412 QVLTLRSN 419 (705)
Q Consensus 412 ~~L~L~~n 419 (705)
+.|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555544
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.43 E-value=0.00022 Score=60.93 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=45.6
Q ss_pred EEecCCCcCC-ccCCccccCCCCCCeeeCCCCcCCCcCcccccCCCCCCeEecccCcccccCC
Q 005267 530 SLNISHNNLT-GGIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 591 (705)
Q Consensus 530 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 591 (705)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|++|+|++|++.+.+-
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 6777777776 34555443 468888888888887777778888888899999998887664
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.22 E-value=0.00019 Score=65.63 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=60.1
Q ss_pred hccccEEEccCCccccc----cchhhhcCCCCCEEecCCCcCCccC----CccccCCCCCCeeeCCCCcC---CC----c
Q 005267 501 LTTFATIDLSSNRFQGE----ISEVLGKLNSLKSLNISHNNLTGGI----PSSLRNLTELESLDLSSNKL---AG----R 565 (705)
Q Consensus 501 l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l---~~----~ 565 (705)
-+.|+.|+|++|++... +.+.+..-+.|++|+|++|.|++.. -+.+..-+.|++|+|++|.. .. .
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 46788899999988754 3344556688999999999988532 34455567899999987633 22 2
Q ss_pred CcccccCCCCCCeEecccCcc
Q 005267 566 IPTQLASLNYLSVLNLSNNQL 586 (705)
Q Consensus 566 ~p~~l~~l~~L~~L~ls~N~l 586 (705)
+.+.+..-+.|+.|+++.|.+
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 334566667888888887754
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.02 E-value=0.00017 Score=65.97 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=28.8
Q ss_pred cCCCCCCEEEccCCCCcceecccCcc---CCCCCCEEecCCCCCC-----CCChhccCCCCCCEEEccCC
Q 005267 52 AKLKNLKYLILSNISLSVSTKLTVNS---SFPNLWALGLSACNIS-----EFPDILKTQHQLDWLDLSEN 113 (705)
Q Consensus 52 ~~l~~L~~L~L~~n~~~~~~~~~~~~---~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~n 113 (705)
..-+.|+.|+|++|.+...+...... .-+.|++|+|++|.|+ .+.+.+..-+.|++|+|+++
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34455555555555443333222111 2345555555555552 12234444455666666543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.45 E-value=0.0056 Score=52.09 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=40.9
Q ss_pred EEEccCCcCC--CCCCCCCCCCcEEEcccCCCCCCCcccccCCCCCcEEEcccCcCC
Q 005267 154 FLTLDSNLLQ--GSLPNLPPHMVQLSISNNSLTGEIPSSFCNLSSIQYLYLSNNSLS 208 (705)
Q Consensus 154 ~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~~~ 208 (705)
.++.+++.++ ......++++++|+|++|.|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666777766 333344677888888888888766777888888888888888764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.39 E-value=14 Score=29.03 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=28.9
Q ss_pred CCccCCccCcCCCCCCEEeCCCCCCccccCcccccCCCCCCEEEccCC
Q 005267 18 LIGSIPSSIFELVNLTFVSLSFNNFSGSVELYDFAKLKNLKYLILSNI 65 (705)
Q Consensus 18 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n 65 (705)
++.+-..+|.++.+|+.+.+..+ ++ .|....|.++.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcCC
Confidence 44444566677777777777654 33 566666677777777766553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.10 E-value=46 Score=25.99 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=16.9
Q ss_pred chhccCCCCCCEEECcCCcCcCCCCccCCCCCcCcEEEcc
Q 005267 235 PQTYAKGCNLTYLRLSGNHLEGPLPPSLSNCVNLQVLDVG 274 (705)
Q Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (705)
...|.++.+|+.+.|..+ ++.+-..+|.+|.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 344444555555444433 222333344444444444443
Done!